Citrus Sinensis ID: 008435

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-----
Protein Sequence
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGSADDSSVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRSICV
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccccccccccHHHccccccccccccccccEEEEEEcccccEEEcEEccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccHEHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MATAKLLLLQLRRcsyyshplsraplchlfnapiptltqtqtpqrafyfrphvhlyhsgsaddssvggdgvgdrysevpipvetvNLSERVIESIageesslpVRALISFLdtyhdftgfpwwTIIVSSTVALRIALLPLIVLQLKKIQRIAEllprlpppfppplsgkrfvDQISLFRRekraagcpSLLWFIASFAIQVPCFLVGVTSIrrmsldghpgfdcggiwwfqnlteyphgvlgsIFPVLMAGLHYTNVQLSfgasslgkeNGLLGLLAKYYKSYLNLmtlplfflgyyipqgslVYWVTNSSFSIVQQLALkhpasrtmlglpdkvvpaaarkpeeidTLETTLESPAKQLKISVENLTPKELIALSVKFLskgdkerpipLLQLalnkepdnINALILMGQTQLQKGLLEEAVEYLECAISKlflaghptepeAIDLLIVASQWSGVACIRQEKWEEGIAHLERignlkepeepkskahyyDGLVVLARYVANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRSICV
Flexible Loop (DISEMBL)
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSgsaddssvggDGVGDRYSEVPIPVETVNLSERVIESiageesslpVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPrlpppfppplsgKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVpaaarkpeeidtlettlespakqlkisvenltpkELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERignlkepeepkSKAHYYDGLVVLARYVANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRSICV
Low Complexity Region (SEG)
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNApiptltqtqtpqRAFYFRPHVHLYHsgsaddssvggdgvgdRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAEllprlpppfppplSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRSICV
Disordered region (IsUnstruct)
****KLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHS**************DRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPP*****LSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLG*******************************ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN**********AHYYDGLVVLARYVANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRSIC*
Disordered Region (DISOPRED)
****************************************************************************EVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQ***********************************AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNV***********************KSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLG*****************************************************************************************E***EYLECAISK**********EAIDLLIVASQWSGVACI***************************AHYYDGLVVLARYVANITF*******SIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRSICV
Disordered Region (DISEMBL)
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSG*********DGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRSICV
Disordered Region (DISPRO)
*AT*KLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGSADDSSVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGAS*********GLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPD********************************NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRSICV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGSADDSSVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRSICV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	565	2.2.26 [Sep-21-2011]
Q0WUC5	566	ALBINO3-like protein 3, m	yes	no	0.699	0.697	0.543	1e-121
Q8L718	525	ALBINO3-like protein 2, c	no	no	0.706	0.76	0.533	1e-115
Q42191	429	Mitochondrial inner membr	no	no	0.401	0.529	0.284	3e-18
Q3SYV3	441	Mitochondrial inner membr	yes	no	0.430	0.551	0.266	1e-15
Q15070	435	Mitochondrial inner membr	yes	no	0.396	0.514	0.259	3e-15
Q8BGA9	433	Mitochondrial inner membr	yes	no	0.438	0.572	0.256	1e-14
O14300	374	Mitochondrial inner membr	yes	no	0.364	0.550	0.267	4e-14
Q9SKD3	431	Mitochondrial inner membr	no	no	0.453	0.593	0.273	6e-14
O43092	409	Mitochondrial inner membr	no	no	0.403	0.557	0.260	6e-12
O13375	371	Mitochondrial inner membr	N/A	no	0.371	0.566	0.234	9e-08

>sp|Q0WUC5|ALB33_ARATH ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=ALB3L3 PE=2 SV=1

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/399 (54%), Positives = 282/399 (70%), Gaps = 4/399 (1%)

Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
           +IS LD+YHD TG PWW +I +STVA R ALLP+++LQ K+ +RI++ LP+LP  +PP  
Sbjct: 123 VISLLDSYHDITGLPWWVVIATSTVAFRTALLPILILQRKQTKRISQFLPKLPHFWPPQG 182

Query: 167 SGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGG 226
           SG+  +DQ+ LFR+E++  GCPS LW  A F+IQ+ CF + +TSIRRMSLD HPGFD GG
Sbjct: 183 SGRSVLDQLKLFRKERKDIGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGG 242

Query: 227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
             WFQNLTE P+G+ G +FP L+AGLHYTN Q++F ASS+ K +     LAK YK++LNL
Sbjct: 243 ALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDKFTE-LAKAYKTFLNL 301

Query: 287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL-PDKVVPAAARKPEE 345
           +T  L+FL + +PQGSL+YW TN SFSI QQ  L HP     LGL  +  V   A  P  
Sbjct: 302 LTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPIL 361

Query: 346 IDTLETTLESPAKQLK-ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN 404
            +  E  L  P+ + + ISV NLTPKEL+ALS K+LS G K++ IPLL+LAL K+P+ + 
Sbjct: 362 TNINEGKLTDPSSKGRLISVHNLTPKELVALSAKYLSGGHKDKSIPLLRLALEKDPEYLQ 421

Query: 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK 464
           A+I++GQ   QK    EA + LE A SKL L   PTE E +DLLIVASQW+GV+ IRQ K
Sbjct: 422 AMIILGQALYQKDQFAEAAKCLEQAASKL-LDTSPTEVEEVDLLIVASQWAGVSNIRQGK 480

Query: 465 WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVAN 503
             EGI HLER+ N+KEP++PKSKAHY D LV+ +  + N
Sbjct: 481 TSEGITHLERVANMKEPDDPKSKAHYLDALVLYSSAIFN 519

Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L718|ALB32_ARATH ALBINO3-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=ALB3L2 PE=2 SV=2

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/401 (53%), Positives = 291/401 (72%), Gaps = 2/401 (0%)

Query: 93  ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIA 152
           E I  ++SSLPV A++ FL+ +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+
Sbjct: 69  EIIPTDDSSLPVLAVVDFLEGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTIS 128

Query: 153 ELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIR 212
           ELLP+LP P P   + K  +DQ S F +E RA GCPS LWF    ++Q+PCF + + SIR
Sbjct: 129 ELLPKLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIR 188

Query: 213 RMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL 272
           +MSLDGHPGFD GG+ WFQNL++ P G  G +FP+L+A  HY N+Q+SF  S++ +  GL
Sbjct: 189 KMSLDGHPGFDSGGVLWFQNLSDLPGGSFGPVFPILIATFHYINIQISFDTSTIRQTTGL 248

Query: 273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332
            GLL +YYK YL ++++PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP     LGL 
Sbjct: 249 TGLLMRYYKLYLEILSVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPTVGAKLGLL 308

Query: 333 DK-VVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPL 391
            +   P      E  +++   ++S +K+  +S++ LTP+EL++LSV+ LSKGDKE  I L
Sbjct: 309 SQGATPGMGHSMEISESVIKYVDSDSKEQTLSLQTLTPEELLSLSVQVLSKGDKETSIQL 368

Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
           L+LAL K+P  +  L+LMGQ  LQK  L EA EYLE AISKL L   P++ E ++LL++A
Sbjct: 369 LRLALEKDPGYVRGLVLMGQALLQKTQLSEATEYLELAISKL-LDEDPSDAEDVELLMLA 427

Query: 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 492
           SQW+G A ++Q K + GI HLER+  L+EP +PKSK HY++
Sbjct: 428 SQWAGAAYVQQGKLKSGIIHLERVAKLREPGDPKSKEHYFE 468

Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42191|OXA1_ARATH Mitochondrial inner membrane protein OXA1 OS=Arabidopsis thaliana GN=OXA1 PE=2 SV=2

 Score = 94.0 bits (232), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 19/246 (7%)

Query: 94  SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAE 153
           ++A  +S  P+ AL   +D  H FTGF WW  IV +T+ +R + +PL++ Q+K   ++A 
Sbjct: 124 TLAAADSFFPIAALQQCIDMVHTFTGFEWWASIVVATILIRSSTVPLLIKQMKDTTKLAL 183

Query: 154 LLPRLPPPFPPPLSGKRFVDQISLFRREKRAA------GCPSLLWFIASFAIQVPCFLVG 207
           + PRL       +  K  +D +++   +K+        G          F IQ P F+  
Sbjct: 184 MRPRL-ESIREEMQNKG-MDSVTMAEGQKKMKNLFKEYGVTPFTPMKGMF-IQGPLFICF 240

Query: 208 VTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLG 267
             +IR M+ +  P F  GG  WF +LT  P  +   I PV+        V+ +   +  G
Sbjct: 241 FLAIRNMA-EKVPSFQTGGALWFTDLTT-PDSLY--ILPVITGLTFLITVECN---AQEG 293

Query: 268 KENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRT 327
            E   +    K       L+T+P   +    PQ    YW+T++ FS++  L +K P  + 
Sbjct: 294 MEGNPMAGTVKTVCRVFALLTVP---MTMSFPQAIFCYWITSNLFSLMYGLVIKRPQVKK 350

Query: 328 MLGLPD 333
           ML +PD
Sbjct: 351 MLRIPD 356

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for activity and assembly of cytochrome c oxidase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3SYV3|OXA1L_BOVIN Mitochondrial inner membrane protein OXA1L OS=Bos taurus GN=OXA1L PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 115/266 (43%), Gaps = 23/266 (8%)

Query: 97  GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
           G  S  PV  + + L+  H   G PWW  I + TV  R  + PLIV   ++  +I   LP
Sbjct: 115 GLGSYTPVGLIQNLLEFMHVNLGLPWWGAIAACTVLARCLVFPLIVKGQREAAKIHNHLP 174

Query: 157 RLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFA------IQVPCFLVGVTS 210
            +   F   +   +     + F R             I  F        Q P F+    +
Sbjct: 175 EIQK-FSARIREAKLTGNHTEFYRASSEMTFYQKKHDIKLFRPLILPLTQAPIFISFFIA 233

Query: 211 IRRMSLDGHPGFDCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKE 269
           +R M+    P    GG+WWFQ+LT   P  VL  +    M           +G   LG E
Sbjct: 234 LREMANLPVPSLQTGGLWWFQDLTLSDPIYVLPLVVTATM-----------WGVLELGAE 282

Query: 270 NGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329
            G+     ++ ++++ LM L +  +  + P    +YW++++ FS+ Q   L+ PA RT+L
Sbjct: 283 TGMQSSDLQWMRNFIRLMPLAVLPITIHFPTAVFMYWLSSNMFSLGQVACLRIPAVRTVL 342

Query: 330 GLPDKVVPAAARKPEEIDTLETTLES 355
            +P +VV      P+++   E  L+S
Sbjct: 343 KIPQRVV----HDPDKLAPREGFLKS 364

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome oxidase. Required for the correct biogenesis of ATP synthase and complex I in mitochondria.

Bos taurus (taxid: 9913)

>sp|Q15070|OXA1L_HUMAN Mitochondrial inner membrane protein OXA1L OS=Homo sapiens GN=OXA1L PE=1 SV=3

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 119/281 (42%), Gaps = 57/281 (20%)

Query: 97  GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
           G  S  PV  + + L+  H   G PWW  I + TV  R  + PLIV   ++  RI   LP
Sbjct: 115 GLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFPLIVTGQREAARIHNHLP 174

Query: 157 RLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAI----------------- 199
            +          ++F  +I    RE + AG   + ++ AS  +                 
Sbjct: 175 EI----------QKFSSRI----REAKLAG-DHIEYYKASSEMALYQKKHGIKLYKPLIL 219

Query: 200 ---QVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTE------YPHGVLGSIFPVLMA 250
              Q P F+    ++R M+    P    GG+WWFQ+LT        P  V  +++ VL  
Sbjct: 220 PVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYILPLAVTATMWAVL-- 277

Query: 251 GLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNS 310
                          LG E G+     ++ ++ + +M L    +  + P    +YW++++
Sbjct: 278 --------------ELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSN 323

Query: 311 SFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
            FS+VQ   L+ PA RT+L +P +VV    + P     LE+
Sbjct: 324 LFSLVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLES 364

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome oxidase. Required for the correct biogenesis of ATP synthase and complex I in mitochondria.

Homo sapiens (taxid: 9606)

>sp|Q8BGA9|OXA1L_MOUSE Mitochondrial inner membrane protein OXA1L OS=Mus musculus GN=Oxa1l PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 25/273 (9%)

Query: 97  GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
           G  S  PV  + + L+  H   G PWW  I + TV  R  + PLIV   ++  +I   +P
Sbjct: 110 GLGSYTPVGLIQNLLEYIHVDLGLPWWGAIATCTVLARCLVFPLIVKGQREAAKIHNHMP 169

Query: 157 RLPPPFPPPLSGKRFVDQISLFR------REKRAAGCPSLLWFIASFAIQVPCFLVGVTS 210
            +          K   DQ   ++      R ++      L   I     Q P F+    +
Sbjct: 170 EMQKFSARIREAKLAGDQAEFYKATIEMTRYQKKHDIKLLRPLILPLT-QAPVFISFFIA 228

Query: 211 IRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIF--PVLMAGLHYTNVQLSFGASSLGK 268
           +R M+    P    GG+WWFQ+LT     V   I+  P+++    +  ++L       G 
Sbjct: 229 LREMANLPVPSLQTGGLWWFQDLT-----VSDPIYVLPLVVTATMWCVLEL-------GA 276

Query: 269 ENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTM 328
           E G+     ++ ++ + +M L +  +  + P    +YW++++ FS+ Q   L+ PA RT+
Sbjct: 277 ETGVQSNDLQFMRNIIRVMPLVVLPVTIHFPSAVFMYWLSSNVFSLCQVACLRIPAVRTV 336

Query: 329 LGLPDKVVPAAARKPEEIDTLETTLESPAKQLK 361
           L +P +VV      P+++   E  L+S  K  K
Sbjct: 337 LKIPQRVV----HDPDKLPPREGFLKSFKKGWK 365

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome oxidase. Required for the correct biogenesis of ATP synthase and complex I in mitochondria.

Mus musculus (taxid: 10090)

>sp|O14300|OXA11_SCHPO Mitochondrial inner membrane protein oxa1-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oxa101 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 22/228 (9%)

Query: 113 TYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFV 172
           T + + G PWW  I+ +T+ +R+AL P+++   +   +++ + P +        + K   
Sbjct: 77  TINVYAGAPWWVSIILTTLGVRLALTPVMIASFRNSTKLSVIQPEMKKELEAIKTAKLDN 136

Query: 173 DQISLFRREKRAAGCPSLLWFIASFAI------QVPCFLVGVTSIRRMSLDGHPGFDCGG 226
           DQ++L +      G   L   +  FAI      Q   F     +IR+MS     GF  GG
Sbjct: 137 DQLALNQHSIALRGI-YLKHNVNPFAIFILPLTQSAVFFSFFYAIRKMSRLSVDGFTTGG 195

Query: 227 IWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFG--ASSLGKENGLLGLLAKYYKSY 283
           + WF++L+   P+ +L    P++ AGL ++ +Q++    AS++G            ++++
Sbjct: 196 LAWFKDLSIPDPYCIL----PIINAGLMFSGMQMNRANTASTIGNSTN--------WRTF 243

Query: 284 LNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL 331
             L  L    L   +P    +YW+ +S F+IVQ   LK+P  R+ LG 
Sbjct: 244 FFLCCLLSPLLTAKLPAAIFMYWIPSSLFNIVQGYILKNPVVRSKLGF 291

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome c oxidase. Not essential for viability, while oxa102 is essential. When both genes are deleted the cell is non-viable, suggesting that oxa101 act as a back-up for oxa102.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9SKD3|OXA1L_ARATH Mitochondrial inner membrane protein OXA1-like OS=Arabidopsis thaliana GN=OXA1L PE=2 SV=1

 Score = 79.7 bits (195), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 127/282 (45%), Gaps = 26/282 (9%)

Query: 94  SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAE 153
           +IA  +S+ PV AL   +D  H FTG  WW  I  +TV +R   +P+++ QLK   ++  
Sbjct: 127 AIAAADSAFPVAALQHLIDAVHSFTGLNWWASIALTTVLIRGVTIPILLNQLKATYKLNV 186

Query: 154 LLPRL---------PPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCF 204
           L P+L             P  ++  +   Q+ LF+        P     +    IQ P F
Sbjct: 187 LRPQLEELRQEMSTKAQDPEAMAEGQRRMQL-LFKEHGVTPFTP-----LKGLIIQGPIF 240

Query: 205 LVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGAS 264
           +    +IR M+ +  P F  GG  WF +LT         I P+L A      V+ +    
Sbjct: 241 ISFFFAIRNMA-EKVPSFKTGGTLWFTDLTTT---DTTYILPLLTAVTFLIMVESNMQEG 296

Query: 265 SLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPA 324
             G  N + G + K+ +  +  +++P+      I +    YW+T++ F++V  L L+ P 
Sbjct: 297 LEG--NPVAGTMKKFSR-IIAFLSIPVLI---GIEKALFCYWLTSNLFTLVYGLTLRRPD 350

Query: 325 SRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVEN 366
            R +L LPD VV ++ R+P     L  +   P  Q  ++ E 
Sbjct: 351 VRKLLNLPD-VVNSSTRQPSPSSPLPFSFAEPKDQSVVAQEK 391

Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane. May participate in the activity and assembly of cytochrome oxidase.

Arabidopsis thaliana (taxid: 3702)

>sp|O43092|OXA12_SCHPO Mitochondrial inner membrane protein oxa1-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oxa102 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 128/288 (44%), Gaps = 60/288 (20%)

Query: 88  SERVI--------ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
           SE+V+         S+    S LP   L + L+T H ++G PWW  I +  VA+RIA+ P
Sbjct: 73  SEKVVYTPSLPLSSSVLASFSFLPHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFP 132

Query: 140 LIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAI 199
           +++  +K   ++A + P++              + +S+  + K  A   S L   A+  I
Sbjct: 133 IMLKMMKTSAKLAIINPKV-------------AEHMSVLSKAK--AEGNSELMMQATTQI 177

Query: 200 QVPCFLVGVTSIRRMSLDGHP-----------------------GFDCGGIWWFQNLTEY 236
           Q    L  V ++  ++L   P                       GF  GG WW  +L++ 
Sbjct: 178 QN---LYKVNNVNPLNLLSAPVFQGILFISFFYALKTMAGVPVEGFTDGGFWWVNDLSQ- 233

Query: 237 PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGY 296
           P  +   IFPV    L   N++L  G+ +   +  +   + K+++ +L L + PLF + +
Sbjct: 234 PDPL--HIFPVANGLLMLLNIEL--GSETGSNKVAMSPSMKKFFR-FLCLAS-PLFTMNF 287

Query: 297 YIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPE 344
             P    +YW  ++ FS+ Q   L+    R  LGLP+  VP+A   P 
Sbjct: 288 --PMAIFMYWFPSNVFSVFQGAFLRSSTIRHKLGLPE--VPSAMPVPN 331

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome c oxidase. It is essential for viability while oxa101 is not. When both are deleted the cell is non-viable, suggesting that oxa101 act as a back-up for oxa102.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O13375|OXA1_SACSE Mitochondrial inner membrane protein OXA1 OS=Saccharomyces servazzii GN=OXA1 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 102/230 (44%), Gaps = 20/230 (8%)

Query: 111 LDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR 170
           L+  H +TG PWW  I + T+ +R+ + P+ V     I + + + P++       ++   
Sbjct: 93  LEYVHVYTGLPWWGTICTVTILVRLLMFPIYVKSSDTIAKNSRIKPQMDKVTKELMATTD 152

Query: 171 FVD--QISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW 228
             +  +I++ RR+  +       W  A   +Q+P  +    ++R M+     GF   GI 
Sbjct: 153 LAEGQKIAVRRRKLLSENGIKNRWLAAPM-LQLPIAIGFFNALRSMANFPVDGFANQGIL 211

Query: 229 WFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENG---LLGLLAKYYKSYLN 285
           WF +LT           P L  GL +    +    S LG E G     G + +++   L 
Sbjct: 212 WFHDLTLSD--------PYL--GLQFITAAVLMSFSRLGGETGAQQFSGPMKRFF-IILP 260

Query: 286 LMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKV 335
           L+++P       +    ++Y+  N +FS++Q L L++   R  L + + V
Sbjct: 261 LVSIPATM---NLSTSVVLYFAINGTFSVLQTLVLRNKWFRKKLNIAEVV 307

Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome c oxidase.

Saccharomyces servazzii (taxid: 27293)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	565
449442253	573	PREDICTED: ALBINO3-like protein 3, mitoc	0.831	0.820	0.578	1e-145
255543108	548	cytochrome oxidase biogenesis protein, p	0.872	0.899	0.556	1e-143
225431027	572	PREDICTED: ALBINO3-like protein 2, chlor	0.713	0.704	0.603	1e-139
297818908	540	binding protein [Arabidopsis lyrata subs	0.863	0.903	0.477	1e-121
224103345	499	inner membrane protein [Populus trichoca	0.803	0.909	0.513	1e-120
145339114	566	membrane insertion protein and OxaA/YidC	0.699	0.697	0.543	1e-119
42562960	525	ALBINO3-like protein 2 [Arabidopsis thal	0.706	0.76	0.533	1e-113
357507673	595	ALBINO3-like protein [Medicago truncatul	0.814	0.773	0.431	1e-111
297837823	524	hypothetical protein ARALYDRAFT_475515 [	0.699	0.753	0.531	1e-110
449477882	366	PREDICTED: ALBINO3-like protein 2, chlor	0.557	0.860	0.641	1e-110

>gi|449442253|ref|XP_004138896.1| PREDICTED: ALBINO3-like protein 3, mitochondrial-like [Cucumis sativus]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/484 (57%), Positives = 349/484 (72%), Gaps = 14/484 (2%)

Query: 27  CHLFNAPIPTLTQ-TQTPQRAFYFRPHV-----HLYHSGSADDSSVGGDGVGDRYSEVPI 80
            H F+  I +L+  T    R+F+ R +       + H G  + S +  D  G +      
Sbjct: 50  SHRFDPHISSLSAFTAFSSRSFWTRSNDDSEFDRIAHYG-VESSHLSNDDTGIQ------ 102

Query: 81  PVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPL 140
            +E   + E VI + A E S LP++ L S LD +H +TG PWW +I SST+ALR  LLP+
Sbjct: 103 DLELGGVVEEVIGATAVENSILPIQQLTSILDGFHQYTGMPWWAVIASSTLALRFTLLPI 162

Query: 141 IVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQ 200
           +++QL K++RI EL P+LPPP PPPLSG+ ++DQISLFR+E++A GCPS LWF A F IQ
Sbjct: 163 LIVQLNKLKRIGELFPKLPPPLPPPLSGRSYIDQISLFRKERKAIGCPSFLWFAAYFFIQ 222

Query: 201 VPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLS 260
           VPCFL+ + +IR+MSLD +PGFD GG  WFQNLTEYPHGV G IFP L+A LH+ NVQLS
Sbjct: 223 VPCFLLWMVTIRKMSLDHYPGFDYGGALWFQNLTEYPHGVFGPIFPFLIASLHFINVQLS 282

Query: 261 FGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLAL 320
           F  SSL KE G++G+LAKYYK YLNL+T+PLFF+GY IPQGSLVYWVTNSSF+ +QQL L
Sbjct: 283 FRKSSLEKETGIIGILAKYYKLYLNLLTVPLFFIGYCIPQGSLVYWVTNSSFTAIQQLTL 342

Query: 321 KHPASRTMLGLPDKVVPAAARKPEEIDT-LETTLESPAKQLKISVENLTPKELIALSVKF 379
           +HPA R+ LGLP +  P       E +   +  LE+  K  KISVE L+PKEL+ALSV+ 
Sbjct: 343 QHPAVRSKLGLPSRDAPVGTTTLRETNNPGKIPLETTTKWKKISVEKLSPKELLALSVQL 402

Query: 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439
           LSKG KE+ IPLL+ ALNKEP+ + AL++MGQT LQ     EA  YLE AISKLFL+GHP
Sbjct: 403 LSKGQKEKAIPLLRQALNKEPEYVRALVVMGQTLLQNAQPAEATVYLERAISKLFLSGHP 462

Query: 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR 499
           TE E +DLLI+ASQW+GVA IRQ K  EGIAHLER+ NLKEPEEPKSKAHYYDGLV+LA 
Sbjct: 463 TEVEGVDLLILASQWAGVAFIRQGKMVEGIAHLERVANLKEPEEPKSKAHYYDGLVLLAS 522

Query: 500 YVAN 503
            + N
Sbjct: 523 ALYN 526

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543108|ref|XP_002512617.1| cytochrome oxidase biogenesis protein, putative [Ricinus communis] gi|223548578|gb|EEF50069.1| cytochrome oxidase biogenesis protein, putative [Ricinus communis]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/512 (55%), Positives = 366/512 (71%), Gaps = 19/512 (3%)

Query: 1   MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYH--- 57
           MA  +LL   +RR    S PL       L N   P L  +Q+P  +  F   +  +H   
Sbjct: 1   MAVPRLLFSHIRR----SRPLCSLSYWRLSN---PNLNCSQSPTPSHKFANSLAAFHFLD 53

Query: 58  --SGSADDSSVGGDGVGDRYSE----VPIPVETVNLSERVIESIAGEESSLPVRALISFL 111
             S S+  +  G D + +  +E    V   +ETV     +  +   EES LPVR L+S L
Sbjct: 54  SRSFSSPSNHDGSDFLANSAAEPSSIVSDVIETVG---NITTNGGNEESILPVRVLVSVL 110

Query: 112 DTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRF 171
           D +HD +G PWW +I S+TVA+R+ L PL+VLQL K+++I+EL P+LPPPFPPPLSGK F
Sbjct: 111 DEFHDLSGLPWWLVIASATVAMRVTLFPLLVLQLHKLKKISELFPKLPPPFPPPLSGKSF 170

Query: 172 VDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQ 231
           VDQISLF +E+RA GCPS LWF+A  + QVPCFL+ +TSIRRMSLD HPGFDCGG  WFQ
Sbjct: 171 VDQISLFHKERRALGCPSYLWFLAYVSAQVPCFLLWMTSIRRMSLDHHPGFDCGGTLWFQ 230

Query: 232 NLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPL 291
           NLTEYPHG+ G IFP+L+A LHY N+QL+F   S+ K  GLL LLAKYYK YL+L+TLPL
Sbjct: 231 NLTEYPHGIAGPIFPLLIACLHYINIQLAFEKFSVQKTTGLLSLLAKYYKLYLDLLTLPL 290

Query: 292 FFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
           FF+GY IPQGSLVYWVTNSS S++QQ++LKHPA R  LGLP K  PAA+   EE+ + + 
Sbjct: 291 FFIGYCIPQGSLVYWVTNSSLSVIQQMSLKHPAVRAKLGLPAKDAPAASADSEEMGSPQA 350

Query: 352 TLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQ 411
           +L++P+K  K+ VENL PK+L+A+SV+ LS   +ER IPLLQLAL K+P+ I AL++MGQ
Sbjct: 351 SLDAPSKNGKVPVENLNPKQLLAISVQLLSNQHRERAIPLLQLALQKDPNYIGALVVMGQ 410

Query: 412 TQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAH 471
           T LQK +  EA ++LE AISKLFLAG+PTE + +DLLI+ASQW+GVACIRQ +  EG+AH
Sbjct: 411 TLLQKEMYAEARDHLERAISKLFLAGNPTEVKDVDLLILASQWAGVACIRQGENAEGVAH 470

Query: 472 LERIGNLKEPEEPKSKAHYYDGLVVLARYVAN 503
            ER+ NL+EPE+PK K HY+D L+ LA  + N
Sbjct: 471 FERVANLEEPEDPKCKVHYFDTLIFLASALYN 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431027|ref|XP_002273357.1| PREDICTED: ALBINO3-like protein 2, chloroplastic [Vitis vinifera] gi|297735304|emb|CBI17666.3| unnamed protein product [Vitis vinifera]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 262/434 (60%), Positives = 329/434 (75%), Gaps = 31/434 (7%)

Query: 89  ERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKI 148
           E  IESI       PVR L+S LD YHD TG+PWW II SST+ALRIAL P++VLQLKK+
Sbjct: 95  ESAIESIP------PVRFLVSLLDGYHDVTGWPWWIIIASSTLALRIALFPILVLQLKKM 148

Query: 149 QRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGV 208
           +RIAELLP+LPPP PPPLSG+ + DQISLFR+EKRA GCPS LWF+AS + QVPCF++ +
Sbjct: 149 KRIAELLPKLPPPLPPPLSGRSYFDQISLFRKEKRAIGCPSFLWFLASLSTQVPCFILWM 208

Query: 209 TSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGK 268
            SIR MSLD HPGFD GG  WFQNLTE+P+GVLG IFP+L++GLH+ NVQ+SF  SS+G+
Sbjct: 209 MSIRWMSLDHHPGFDSGGALWFQNLTEFPNGVLGPIFPILISGLHFINVQISFSTSSVGQ 268

Query: 269 ENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTM 328
             GLLGLLAKYYK YL ++T+P+FF G+YIPQGSLVYWVTNSS S +QQL ++HP  R  
Sbjct: 269 VPGLLGLLAKYYKFYLEILTVPIFFTGFYIPQGSLVYWVTNSSLSAIQQLTIRHPTVRAK 328

Query: 329 LGLPDKVVPAAARK--------------------PEEIDTLE----TTLESPAKQLKISV 364
           LGLPDK  P AA K                    PE +   E     ++    KQ +I +
Sbjct: 329 LGLPDKQAPNAAAKEMHTPGEGSLGPPTKQQYISPESVSPQELPGIKSMYPRRKQHQIPI 388

Query: 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE 424
           E+L+P++LIALSV+ LSKGDK+  IP +++AL+K+P+ + AL++MGQT LQK  +EEA +
Sbjct: 389 ESLSPRDLIALSVQILSKGDKDGAIPFIRMALDKDPNYVRALVVMGQTLLQKEQVEEASD 448

Query: 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484
           YLE A++KLFL GHPTE E +DL+I+ASQW+G AC+RQ K  EG+ HLERI NLKEP+EP
Sbjct: 449 YLERAVTKLFLIGHPTEDE-VDLMILASQWAGAACVRQGKTAEGLVHLERIANLKEPDEP 507

Query: 485 KSKAHYYDGLVVLA 498
           KSKAHY+DGL++LA
Sbjct: 508 KSKAHYFDGLLLLA 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818908|ref|XP_002877337.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323175|gb|EFH53596.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/507 (47%), Positives = 322/507 (63%), Gaps = 19/507 (3%)

Query: 1   MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGS 60
           MA  ++LL  LRR     H  S     H+     P++T      R F   P +    +  
Sbjct: 1   MAFRRVLLSNLRRSH---HTCSSLSPHHISATTHPSITLGLFQSRFFSTPPDLDSELTRL 57

Query: 61  ADDS--SVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFT 118
            DDS    G +G G  +S+         LS+ +I +       L  + +IS LD+YHD T
Sbjct: 58  RDDSVTGFGTNGHGLEFSD---------LSQDLIGAGVSNYDYL-TQPVISLLDSYHDLT 107

Query: 119 GFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLF 178
           G PWW +I +STVA R ALLP+++LQ K+ +RI++ LP+LPP +PP  SG+  +DQ+ LF
Sbjct: 108 GLPWWVVIATSTVAFRTALLPILILQRKQTRRISQFLPKLPPFWPPEGSGRSVIDQLKLF 167

Query: 179 RREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPH 238
           R+E+R +GCPS LW  A F+IQ+ CF + +TSIRRMSLD HPGFD GG  WFQNLTE P+
Sbjct: 168 RKERRDSGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGGALWFQNLTEVPN 227

Query: 239 GVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYI 298
           G+ G +FP L+AGLHYTN Q++F ASS+ K +     LAK +K +LN +T  L+ L + +
Sbjct: 228 GLYGPLFPFLIAGLHYTNTQITFTASSVHKVDK-FAELAKTFKMFLNFLTFALYGLSFQM 286

Query: 299 PQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL-PDKVVPAAARKPEEIDTLETTL-ESP 356
           PQGSL+YW TN SFSI QQ  L HP     LGL  +  V   A  P   +  E  L +S 
Sbjct: 287 PQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPILTNINEAKLTDSS 346

Query: 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK 416
           +K   IS  NLTPKEL+ALS K+LS G+K++ IPLL+LAL K+P+ + A++++GQ   QK
Sbjct: 347 SKGRLISGHNLTPKELVALSAKYLSGGNKDKSIPLLRLALEKDPEYLQAMVILGQALYQK 406

Query: 417 GLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476
               EA +YLE A SKL L   PTE E +DLLIVASQW+GV+ IRQ K  EGI HLER+ 
Sbjct: 407 DQFAEAAKYLELAASKL-LDTSPTEVEEVDLLIVASQWAGVSNIRQGKTSEGITHLERVA 465

Query: 477 NLKEPEEPKSKAHYYDGLVVLARYVAN 503
           N+KEP++PKSKAHY D LV+ +  + N
Sbjct: 466 NMKEPDDPKSKAHYLDALVLYSSAIFN 492

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103345|ref|XP_002313020.1| inner membrane protein [Populus trichocarpa] gi|222849428|gb|EEE86975.1| inner membrane protein [Populus trichocarpa]

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/499 (51%), Positives = 314/499 (62%), Gaps = 45/499 (9%)

Query: 1   MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGS 60
           MAT  LLL  LRR    S  LSR PL +    P P  + T  P  A   R  +  ++  S
Sbjct: 1   MATRSLLLSTLRRSRPIS-TLSR-PLTNSSPGPNPN-SLTSQPSNAISSRNSLASFNFPS 57

Query: 61  ADDSSVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGF 120
               S         + E   PV T    + V+  I      LPV ++I  LD+YHD TG 
Sbjct: 58  CRSLSTRTASESINFEEFADPVST-ETEDGVVNGI------LPVDSMIWLLDSYHDLTGL 110

Query: 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRR 180
           PWW II SST+A+R+ L PL VLQ+ KI++I+    +LPP FPPPLSG+ +++QISLFR 
Sbjct: 111 PWWIIIASSTLAMRLTLFPLHVLQMHKIKKISRSFSKLPPLFPPPLSGRSYIEQISLFRN 170

Query: 181 EKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGV 240
           E+RA GCPS LWF+A  ++Q+PCFL+ +TSIRRM LD HPGFDCGG  WFQNLTE PHGV
Sbjct: 171 ERRAIGCPSYLWFLAFLSVQIPCFLLWMTSIRRMCLDNHPGFDCGGALWFQNLTELPHGV 230

Query: 241 LGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQ 300
           LG IFP L+AGLH  NV                     YY+ YLN M LPLFF+GY IPQ
Sbjct: 231 LGPIFPFLIAGLHGVNVH--------------------YYRKYLNFMMLPLFFIGYCIPQ 270

Query: 301 GSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQL 360
           GSLVYWVTNSS + +QQ++LK P  R  LGL DK  P A     E+   E          
Sbjct: 271 GSLVYWVTNSSLTAIQQVSLKLPVVRAKLGLLDKDFPKAPALSAEMVAHELR-------- 322

Query: 361 KISVENLTPKEL------IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQL 414
           K+S ENL+P EL      + LSVK LS G + R IPLLQ+AL K+  ++ ALI+MGQ +L
Sbjct: 323 KVSPENLSPHELLVVSGAVQLSVKLLSSGHRARAIPLLQMALEKDSGHVKALIVMGQARL 382

Query: 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474
           Q+GL  EA ++LE AIS L L GHPT  E +D LI+ASQW+GVACIRQ K  EGI HLER
Sbjct: 383 QEGLHAEATDHLERAISNLILTGHPTA-EDVDHLILASQWAGVACIRQGKNAEGIMHLER 441

Query: 475 IGNLKEPEEPKSKAHYYDG 493
           I +L+EPE+PKSKAHY+DG
Sbjct: 442 ITSLEEPEDPKSKAHYFDG 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145339114|ref|NP_190023.2| membrane insertion protein and OxaA/YidC with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|122242629|sp|Q0WUC5.1|ALB33_ARATH RecName: Full=ALBINO3-like protein 3, mitochondrial; Flags: Precursor gi|110742724|dbj|BAE99273.1| hypothetical protein [Arabidopsis thaliana] gi|332644376|gb|AEE77897.1| membrane insertion protein and OxaA/YidC with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/399 (54%), Positives = 282/399 (70%), Gaps = 4/399 (1%)

Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
           +IS LD+YHD TG PWW +I +STVA R ALLP+++LQ K+ +RI++ LP+LP  +PP  
Sbjct: 123 VISLLDSYHDITGLPWWVVIATSTVAFRTALLPILILQRKQTKRISQFLPKLPHFWPPQG 182

Query: 167 SGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGG 226
           SG+  +DQ+ LFR+E++  GCPS LW  A F+IQ+ CF + +TSIRRMSLD HPGFD GG
Sbjct: 183 SGRSVLDQLKLFRKERKDIGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGG 242

Query: 227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
             WFQNLTE P+G+ G +FP L+AGLHYTN Q++F ASS+ K +     LAK YK++LNL
Sbjct: 243 ALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDKFTE-LAKAYKTFLNL 301

Query: 287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL-PDKVVPAAARKPEE 345
           +T  L+FL + +PQGSL+YW TN SFSI QQ  L HP     LGL  +  V   A  P  
Sbjct: 302 LTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPIL 361

Query: 346 IDTLETTLESPAKQLK-ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN 404
            +  E  L  P+ + + ISV NLTPKEL+ALS K+LS G K++ IPLL+LAL K+P+ + 
Sbjct: 362 TNINEGKLTDPSSKGRLISVHNLTPKELVALSAKYLSGGHKDKSIPLLRLALEKDPEYLQ 421

Query: 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK 464
           A+I++GQ   QK    EA + LE A SKL L   PTE E +DLLIVASQW+GV+ IRQ K
Sbjct: 422 AMIILGQALYQKDQFAEAAKCLEQAASKL-LDTSPTEVEEVDLLIVASQWAGVSNIRQGK 480

Query: 465 WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVAN 503
             EGI HLER+ N+KEP++PKSKAHY D LV+ +  + N
Sbjct: 481 TSEGITHLERVANMKEPDDPKSKAHYLDALVLYSSAIFN 519

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562960|ref|NP_176688.3| ALBINO3-like protein 2 [Arabidopsis thaliana] gi|38372237|sp|Q8L718.2|ALB32_ARATH RecName: Full=ALBINO3-like protein 2, chloroplastic; Short=Ath5; Flags: Precursor gi|6227006|gb|AAF06042.1|AC009360_7 F16G16.8 [Arabidopsis thaliana] gi|332196206|gb|AEE34327.1| ALBINO3-like protein 2 [Arabidopsis thaliana]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/401 (53%), Positives = 291/401 (72%), Gaps = 2/401 (0%)

Query: 93  ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIA 152
           E I  ++SSLPV A++ FL+ +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+
Sbjct: 69  EIIPTDDSSLPVLAVVDFLEGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTIS 128

Query: 153 ELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIR 212
           ELLP+LP P P   + K  +DQ S F +E RA GCPS LWF    ++Q+PCF + + SIR
Sbjct: 129 ELLPKLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIR 188

Query: 213 RMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL 272
           +MSLDGHPGFD GG+ WFQNL++ P G  G +FP+L+A  HY N+Q+SF  S++ +  GL
Sbjct: 189 KMSLDGHPGFDSGGVLWFQNLSDLPGGSFGPVFPILIATFHYINIQISFDTSTIRQTTGL 248

Query: 273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332
            GLL +YYK YL ++++PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP     LGL 
Sbjct: 249 TGLLMRYYKLYLEILSVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPTVGAKLGLL 308

Query: 333 DK-VVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPL 391
            +   P      E  +++   ++S +K+  +S++ LTP+EL++LSV+ LSKGDKE  I L
Sbjct: 309 SQGATPGMGHSMEISESVIKYVDSDSKEQTLSLQTLTPEELLSLSVQVLSKGDKETSIQL 368

Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
           L+LAL K+P  +  L+LMGQ  LQK  L EA EYLE AISKL L   P++ E ++LL++A
Sbjct: 369 LRLALEKDPGYVRGLVLMGQALLQKTQLSEATEYLELAISKL-LDEDPSDAEDVELLMLA 427

Query: 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 492
           SQW+G A ++Q K + GI HLER+  L+EP +PKSK HY++
Sbjct: 428 SQWAGAAYVQQGKLKSGIIHLERVAKLREPGDPKSKEHYFE 468

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507673|ref|XP_003624125.1| ALBINO3-like protein [Medicago truncatula] gi|355499140|gb|AES80343.1| ALBINO3-like protein [Medicago truncatula]

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/542 (43%), Positives = 322/542 (59%), Gaps = 82/542 (15%)

Query: 21  LSRAPLCHLF--NAPIPTLTQTQTPQRAFYFRPHVHLYHSGSADDSSVGGDGVGDRYSEV 78
           +SR P  H F  ++P PT         AF    H   + +GS++D  +  D +G    + 
Sbjct: 22  MSRIPASHPFTPHSPTPTFLD------AF----HTRAFSTGSSNDE-LDTDSLG---LDS 67

Query: 79  PIPVETVNLSERVIESIAGEES--SLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIA 136
           P+  E +    + I   AG E     PVRA+IS L+++HD TGFPWW  I+SST+ALR+ 
Sbjct: 68  PVHSEIL----KTIADSAGSEDIPVFPVRAVISLLESFHDLTGFPWWLTIISSTLALRLV 123

Query: 137 LLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIAS 196
           LL  ++  L K++RI+E +P+LPPPFPPP SGK ++ Q+  F  +++A GCPS  W +  
Sbjct: 124 LLCPLIFTLHKLKRISEFVPKLPPPFPPPFSGKSYIRQMRFFEEKRKAVGCPSYAWPLLP 183

Query: 197 FAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTN 256
           F +QVPCF V + SIRRMSLDGHPGFDCGG  WFQNLTE+ HG  G  FP LMAGLHY  
Sbjct: 184 FIVQVPCFFVWMFSIRRMSLDGHPGFDCGGALWFQNLTEFSHGYSGFTFPFLMAGLHYVI 243

Query: 257 VQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQ---------------- 300
           VQ++F    + +   +  LL+KYYK YL+ +TLP+ F+G+ IPQ                
Sbjct: 244 VQVTFKKPMIEETQDIFDLLSKYYKRYLDFLTLPIAFIGFSIPQGTFLDYNVAQALKGHL 303

Query: 301 ----------------------GSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPA 338
                                 GS +YW+TNSS ++VQ  AL++PA+   LGL DK    
Sbjct: 304 LKPNGPESIKSTSYPLSLSLTHGSQLYWITNSSLTLVQHFALRNPAALAKLGLLDKNRQI 363

Query: 339 AARK----------------------PEEIDTLETTLESPAKQLKISVENLTPKELIALS 376
           AA K                       E I   +  L+SP K  KI +EN++  EL  L+
Sbjct: 364 AASKETDASKTPPLLGVQDNSTTAATKETISPEKNPLDSPEKWHKIPIENMSSVELTTLA 423

Query: 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436
           V FL+  DK+  IPLL+LAL+K+P+ + AL+LMG+  L K + +EA++Y E AISKL LA
Sbjct: 424 VPFLNSSDKDSAIPLLKLALDKDPEYLRALVLMGRVLLLKQINDEAIQYFERAISKLSLA 483

Query: 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 496
           G PT+PE  D LI++SQW+G+A  RQ K +E  AH ER+ N++EPE+P SK +Y+DGL++
Sbjct: 484 GFPTDPEEFDFLILSSQWAGIAFERQGKKDEARAHFERVANMEEPEDPASKRYYFDGLLL 543

Query: 497 LA 498
           LA
Sbjct: 544 LA 545

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837823|ref|XP_002886793.1| hypothetical protein ARALYDRAFT_475515 [Arabidopsis lyrata subsp. lyrata] gi|297332634|gb|EFH63052.1| hypothetical protein ARALYDRAFT_475515 [Arabidopsis lyrata subsp. lyrata]

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/397 (53%), Positives = 285/397 (71%), Gaps = 2/397 (0%)

Query: 97  GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
            ++SSLPV  ++ FLD +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+ELLP
Sbjct: 72  NDDSSLPVLFVVDFLDGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTISELLP 131

Query: 157 RLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSL 216
           +LP P P   + K  +DQ S F +E RA GCPS LWF    ++Q+PCF + + SIR+MSL
Sbjct: 132 QLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIRKMSL 191

Query: 217 DGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLL 276
           DGHPGFD GG  WFQNL++ P G  G +FP+L+A  HY N+Q+SF  S++ +  GL GLL
Sbjct: 192 DGHPGFDSGGALWFQNLSDLPVGSFGPVFPILIAAFHYINIQISFDTSTIRQTTGLTGLL 251

Query: 277 AKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLG-LPDKV 335
            +YYK YL ++ +PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP     LG L    
Sbjct: 252 MRYYKLYLEILGVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPRVGAKLGLLTQGA 311

Query: 336 VPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLA 395
            P+     E  +++   ++S  K+  +S++ LTP+EL++LSV+ LSK DKE  I LL+LA
Sbjct: 312 SPSVEHSMEISESVIKYVDSDLKEHTLSLQTLTPEELLSLSVQVLSKDDKETSIQLLRLA 371

Query: 396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455
           L+K+P  +  L+LMGQ  LQK  L EA +YLE AISKL L   P++ E ++LL++ASQW+
Sbjct: 372 LDKDPGYVRGLVLMGQALLQKTELSEATKYLELAISKL-LDEDPSDAEDVELLMLASQWA 430

Query: 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 492
           G A ++Q K + GI HLER+  LKEP +PKSK HY++
Sbjct: 431 GAAYVQQGKMKSGITHLERVAKLKEPGDPKSKEHYFE 467

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477882|ref|XP_004155151.1| PREDICTED: ALBINO3-like protein 2, chloroplastic-like [Cucumis sativus]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/318 (64%), Positives = 244/318 (76%), Gaps = 3/318 (0%)

Query: 187 CPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFP 246
           C  L++F     +QVPCFL+ + +IR+MSLD +PGFD GG  WFQNLTEYPHGV G IFP
Sbjct: 4   CLFLVYF--QMYMQVPCFLLWMVTIRKMSLDHYPGFDYGGALWFQNLTEYPHGVFGPIFP 61

Query: 247 VLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYW 306
            L+A LH+ NVQLSF  SSL KE G++G+LAKYYK YLNL+T+PLFF+GY IPQGSLVYW
Sbjct: 62  FLIASLHFINVQLSFRKSSLEKETGIIGILAKYYKLYLNLLTVPLFFIGYCIPQGSLVYW 121

Query: 307 VTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDT-LETTLESPAKQLKISVE 365
           VTNSSF+ +QQL L+HPA R+ LGLP +  P       E +   +  LE+  K  KISVE
Sbjct: 122 VTNSSFTAIQQLTLQHPAVRSKLGLPSRDAPVGTTTLRETNNPGKIPLETTTKWKKISVE 181

Query: 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEY 425
            L+PKEL+ALSV+ LSKG KE+ IPLL+ ALNKEP+ + AL++MGQT LQ     EA  Y
Sbjct: 182 KLSPKELLALSVQLLSKGQKEKAIPLLRQALNKEPEYVRALVVMGQTLLQNAQPAEATVY 241

Query: 426 LECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485
           LE AISKLFL+GHPTE E +DLLI+ASQW+GVA IRQ K  EGIAHLER+ NLKEPEEPK
Sbjct: 242 LERAISKLFLSGHPTEVEGVDLLILASQWAGVAFIRQGKMVEGIAHLERVANLKEPEEPK 301

Query: 486 SKAHYYDGLVVLARYVAN 503
           SKAHYYDGLV+LA  + N
Sbjct: 302 SKAHYYDGLVLLASALYN 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	565
TAIR|locus:2014973	525	AT1G65080 [Arabidopsis thalian	0.716	0.771	0.513	1.4e-110
TAIR|locus:2100172	566	AT3G44370 [Arabidopsis thalian	0.699	0.697	0.528	8.3e-106
TAIR|locus:2174068	429	OXA1 "homolog of yeast oxidase	0.461	0.608	0.260	1.3e-17
ZFIN|ZDB-GENE-071004-49	469	oxa1l "oxidase (cytochrome c)	0.407	0.490	0.282	8.5e-17
TAIR|locus:2039134	431	OXA1L "AT2G46470" [Arabidopsis	0.449	0.589	0.269	4e-16
UNIPROTKB|E7EVY0	408	OXA1L "Mitochondrial inner mem	0.470	0.651	0.262	9.3e-16
RGD|1585024	433	Oxa1l "oxidase (cytochrome c)	0.555	0.725	0.228	1.5e-14
UNIPROTKB|Q15070	435	OXA1L "Mitochondrial inner mem	0.456	0.593	0.262	1.6e-14
UNIPROTKB|J3KNA0	495	OXA1L "Mitochondrial inner mem	0.456	0.521	0.262	2.2e-14
UNIPROTKB|Q3SYV3	441	OXA1L "Mitochondrial inner mem	0.522	0.668	0.243	4.6e-14

TAIR|locus:2014973 AT1G65080 [Arabidopsis thaliana (taxid:3702)]

 Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
 Identities = 209/407 (51%), Positives = 288/407 (70%)

Query:    93 ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIA 152
             E I  ++SSLPV A++ FL+ +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+
Sbjct:    69 EIIPTDDSSLPVLAVVDFLEGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTIS 128

Query:   153 EXXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIR 212
             E             + K  +DQ S F +E RA GCPS LWF    ++Q+PCF + + SIR
Sbjct:   129 ELLPKLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIR 188

Query:   213 RMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL 272
             +MSLDGHPGFD GG+ WFQNL++ P G  G +FP+L+A  HY N+Q+SF  S++ +  GL
Sbjct:   189 KMSLDGHPGFDSGGVLWFQNLSDLPGGSFGPVFPILIATFHYINIQISFDTSTIRQTTGL 248

Query:   273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332
              GLL +YYK YL ++++PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP     LGL 
Sbjct:   249 TGLLMRYYKLYLEILSVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPTVGAKLGLL 308

Query:   333 DK-VVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPL 391
              +   P      E  +++   ++S +K+  +S++ LTP+EL++LSV+ LSKGDKE  I L
Sbjct:   309 SQGATPGMGHSMEISESVIKYVDSDSKEQTLSLQTLTPEELLSLSVQVLSKGDKETSIQL 368

Query:   392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
             L+LAL K+P  +  L+LMGQ  LQK  L EA EYLE AISKL L   P++ E ++LL++A
Sbjct:   369 LRLALEKDPGYVRGLVLMGQALLQKTQLSEATEYLELAISKL-LDEDPSDAEDVELLMLA 427

Query:   452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 498
             SQW+G A ++Q K + GI HLER+  L+EP +PKSK HY++ L++L+
Sbjct:   428 SQWAGAAYVQQGKLKSGIIHLERVAKLREPGDPKSKEHYFEALLLLS 474

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2100172 AT3G44370 [Arabidopsis thaliana (taxid:3702)]

 Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
 Identities = 211/399 (52%), Positives = 274/399 (68%)

Query:   107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAEXXXXXXXXXXXXX 166
             +IS LD+YHD TG PWW +I +STVA R ALLP+++LQ K+ +RI++             
Sbjct:   123 VISLLDSYHDITGLPWWVVIATSTVAFRTALLPILILQRKQTKRISQFLPKLPHFWPPQG 182

Query:   167 SGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGG 226
             SG+  +DQ+ LFR+E++  GCPS LW  A F+IQ+ CF + +TSIRRMSLD HPGFD GG
Sbjct:   183 SGRSVLDQLKLFRKERKDIGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGG 242

Query:   227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
               WFQNLTE P+G+ G +FP L+AGLHYTN Q++F ASS+ K +    L AK YK++LNL
Sbjct:   243 ALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDKFTEL-AKAYKTFLNL 301

Query:   287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP-DKVVPAAARKPEE 345
             +T  L+FL + +PQGSL+YW TN SFSI QQ  L HP     LGL  +  V   A  P  
Sbjct:   302 LTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPIL 361

Query:   346 IDTLETTLESPAKQLK-ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN 404
              +  E  L  P+ + + ISV NLTPKEL+ALS K+LS G K++ IPLL+LAL K+P+ + 
Sbjct:   362 TNINEGKLTDPSSKGRLISVHNLTPKELVALSAKYLSGGHKDKSIPLLRLALEKDPEYLQ 421

Query:   405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK 464
             A+I++GQ   QK    EA + LE A SKL L   PTE E +DLLIVASQW+GV+ IRQ K
Sbjct:   422 AMIILGQALYQKDQFAEAAKCLEQAASKL-LDTSPTEVEEVDLLIVASQWAGVSNIRQGK 480

Query:   465 WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVAN 503
               EGI HLER+ N+KEP++PKSKAHY D LV+ +  + N
Sbjct:   481 TSEGITHLERVANMKEPDDPKSKAHYLDALVLYSSAIFN 519

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

TAIR|locus:2174068 OXA1 "homolog of yeast oxidase assembly 1 (OXA1)" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 74/284 (26%), Positives = 133/284 (46%)

Query:    94 SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAE 153
             ++A  +S  P+ AL   +D  H FTGF WW  IV +T+ +R + +PL++ Q+K   ++A 
Sbjct:   124 TLAAADSFFPIAALQQCIDMVHTFTGFEWWASIVVATILIRSSTVPLLIKQMKDTTKLAL 183

Query:   154 XXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGC---PSLLWF--IASFAIQVPCFLVGV 208
                          +  + +D +++   +K+         +  F  +    IQ P F+   
Sbjct:   184 MRPRLESIREEMQN--KGMDSVTMAEGQKKMKNLFKEYGVTPFTPMKGMFIQGPLFICFF 241

Query:   209 TSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGK 268
              +IR M+ +  P F  GG  WF +LT  P  +   I PV+  GL +  + +   A    +
Sbjct:   242 LAIRNMA-EKVPSFQTGGALWFTDLTT-PDSLY--ILPVI-TGLTFL-ITVECNAQEGME 295

Query:   269 ENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTM 328
              N + G +    + +  L+T+P+       PQ    YW+T++ FS++  L +K P  + M
Sbjct:   296 GNPMAGTVKTVCRVFA-LLTVPMTMS---FPQAIFCYWITSNLFSLMYGLVIKRPQVKKM 351

Query:   329 LGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKEL 372
             L +PD   P   ++P   D     L S  K++K   ++ T  ++
Sbjct:   352 LRIPDLPPPPPGQQPS-FD-----LFSALKKMKAMTQDHTQNQI 389

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0006461 "protein complex assembly" evidence=IMP

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IGI

ZFIN|ZDB-GENE-071004-49 oxa1l "oxidase (cytochrome c) assembly 1-like" [Danio rerio (taxid:7955)]

 Score = 235 (87.8 bits), Expect = 8.5e-17, P = 8.5e-17
 Identities = 72/255 (28%), Positives = 116/255 (45%)

Query:   100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVL---QLKKIQRIA-EXX 155
             +S PV  + + L+  H   G PWW  IV+ T+  R A+ P+IV    +  K+  +  E  
Sbjct:   153 NSTPVGLIQNLLEFMHVSIGLPWWGAIVAGTIVARCAVFPVIVKGQREAAKLNNVMPEMT 212

Query:   156 XXXXXXXXXXXSGKRF-----VDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTS 210
                        SG +F        + +F+++K     P    F+    +Q P FL    +
Sbjct:   213 KLTNRMNEAKQSGNKFEFSKAYTDLMMFQKKKDVN--P-FRGFLVPL-VQAPIFLSFFIA 268

Query:   211 IRRMSLDGHPGFDCGGIWWFQNLTEY-PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKE 269
             +R+MS    P    GG+WWF +LT   P  +L    P+ + G     ++L  GA S G +
Sbjct:   269 LRKMSELPVPSLQTGGLWWFTDLTAADPFYIL----PIAVTGTMVAILEL--GAES-GVD 321

Query:   270 NGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329
             N  L  +    K+   +M   +  L    P     YW+T++ FS+ Q   L+HPA R  L
Sbjct:   322 NPNLRAM----KTVFRIMPFVILPLTINFPTAVFTYWMTSNLFSLAQVAVLRHPAVRQKL 377

Query:   330 GLPDKVVPAAARKPE 344
              +P+++V   +  PE
Sbjct:   378 RIPERIVHPQSALPE 392

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2039134 OXA1L "AT2G46470" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 4.0e-16, P = 4.0e-16
 Identities = 76/282 (26%), Positives = 128/282 (45%)

Query:    94 SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLK------- 146
             +IA  +S+ PV AL   +D  H FTG  WW  I  +TV +R   +P+++ QLK       
Sbjct:   127 AIAAADSAFPVAALQHLIDAVHSFTGLNWWASIALTTVLIRGVTIPILLNQLKATYKLNV 186

Query:   147 ---KIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPC 203
                +++ + +              G+R + Q+ LF+        P     +    IQ P 
Sbjct:   187 LRPQLEELRQEMSTKAQDPEAMAEGQRRM-QL-LFKEHGVTPFTP-----LKGLIIQGPI 239

Query:   204 FLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGA 263
             F+    +IR M+ +  P F  GG  WF +LT         I P+L A      V+ +   
Sbjct:   240 FISFFFAIRNMA-EKVPSFKTGGTLWFTDLTTTDTTY---ILPLLTAVTFLIMVESNMQE 295

Query:   264 SSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
                G  N + G + K+ +  +  +++P+  +G  I +    YW+T++ F++V  L L+ P
Sbjct:   296 GLEG--NPVAGTMKKFSR-IIAFLSIPVL-IG--IEKALFCYWLTSNLFTLVYGLTLRRP 349

Query:   324 ASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVE 365
               R +L LPD VV ++ R+P     L  +   P  Q  ++ E
Sbjct:   350 DVRKLLNLPD-VVNSSTRQPSPSSPLPFSFAEPKDQSVVAQE 390

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=TAS

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|E7EVY0 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 9.3e-16, P = 9.3e-16
 Identities = 75/286 (26%), Positives = 119/286 (41%)

Query:    83 ETVNLSERVIE-SIA--GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
             ET ++ +   E S A  G  S  PV  + + L+  H   G PWW  I + TV  R  + P
Sbjct:    98 ETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFP 157

Query:   140 LIVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAA------GCPSLLWF 193
             LIV   ++  RI                 K   D I  ++     A      G       
Sbjct:   158 LIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPL 217

Query:   194 IASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLH 253
             I     Q P F+    ++R M+    P    GG+WWFQ+LT           P+ +  L 
Sbjct:   218 ILPVT-QAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYILPLA 268

Query:   254 YTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFS 313
              T     +    LG E G+     ++ ++ + +M L    +  + P    +YW++++ FS
Sbjct:   269 VTATM--WAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFS 326

Query:   314 IVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQ 359
             +VQ   L+ PA RT+L +P +VV    + P     LE+  + P +Q
Sbjct:   327 LVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLESFKKGPLRQ 372

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1585024 Oxa1l "oxidase (cytochrome c) assembly 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 214 (80.4 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 76/333 (22%), Positives = 135/333 (40%)

Query:    81 PVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPL 140
             P + V  +     +  G  S  PV  + + L+  H   G PWW  I + TV  R  + PL
Sbjct:    94 PADVVQCATEQSFAELGLGSYTPVGLIQNLLEYIHVDLGLPWWGAIATCTVLARCLVFPL 153

Query:   141 IVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGCPSL--LWFIASFA 198
             IV   ++  +I                 K   DQ   ++             + F     
Sbjct:   154 IVKGQREAAKIHNHMPEMQKFSARIREAKLSGDQAEFYKATIEMTHYQKKHDIKFFRPLI 213

Query:   199 I---QVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYT 255
             +   Q P F+    ++R M+    P    GG+WWFQ+LT           P+ +  L  T
Sbjct:   214 LPLTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYVLPLVVT 265

Query:   256 NVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIV 315
                  +G   LG E G+     +  ++ + +M L +  +  + P    +YW++++ FS+ 
Sbjct:   266 ATM--WGVLELGAETGMQSSDLQLMRNVIRVMPLAVLPVTIHFPSAVFMYWLSSNVFSLC 323

Query:   316 QQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIAL 375
             Q   L+ PA RT L +P +VV   ++ P     L++  +   K  +I+      +E +  
Sbjct:   324 QVACLRFPAVRTALKIPQRVVHDPSKLPPREGFLKS-FKKGWKNAEIAHRLREREERMQK 382

Query:   376 SVKFLSKGDKERPI---PLLQLALNKEPDNINA 405
              +   ++G   +     PLLQ   ++ P+  N+
Sbjct:   383 HLDLAARGPLRQTFTHNPLLQHDPSRSPNTPNS 415

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0009060 "aerobic respiration" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0032592 "integral to mitochondrial membrane" evidence=ISO

GO:0032780 "negative regulation of ATPase activity" evidence=ISO

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

GO:0033615 "mitochondrial proton-transporting ATP synthase complex assembly" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0051262 "protein tetramerization" evidence=ISO

GO:0051354 "negative regulation of oxidoreductase activity" evidence=ISO

GO:0097031 "mitochondrial respiratory chain complex I biogenesis" evidence=ISO

GO:0097177 "mitochondrial ribosome binding" evidence=ISO

UNIPROTKB|Q15070 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 73/278 (26%), Positives = 115/278 (41%)

Query:    83 ETVNLSERVIE-SIA--GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
             ET ++ +   E S A  G  S  PV  + + L+  H   G PWW  I + TV  R  + P
Sbjct:    98 ETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFP 157

Query:   140 LIVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAA------GCPSLLWF 193
             LIV   ++  RI                 K   D I  ++     A      G       
Sbjct:   158 LIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPL 217

Query:   194 IASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLH 253
             I     Q P F+    ++R M+    P    GG+WWFQ+LT           P+ +  L 
Sbjct:   218 ILPVT-QAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYILPLA 268

Query:   254 YTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFS 313
              T     +    LG E G+     ++ ++ + +M L    +  + P    +YW++++ FS
Sbjct:   269 VTATM--WAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFS 326

Query:   314 IVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
             +VQ   L+ PA RT+L +P +VV    + P     LE+
Sbjct:   327 LVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLES 364

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0032592 "integral to mitochondrial membrane" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0033615 "mitochondrial proton-transporting ATP synthase complex assembly" evidence=IMP

GO:0032780 "negative regulation of ATPase activity" evidence=IMP

GO:0051354 "negative regulation of oxidoreductase activity" evidence=IMP

GO:0009060 "aerobic respiration" evidence=NAS;IMP

GO:0005746 "mitochondrial respiratory chain" evidence=NAS

GO:0055114 "oxidation-reduction process" evidence=NAS

GO:0006461 "protein complex assembly" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0051262 "protein tetramerization" evidence=IDA

GO:0097177 "mitochondrial ribosome binding" evidence=IDA

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0097031 "mitochondrial respiratory chain complex I biogenesis" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|J3KNA0 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 73/278 (26%), Positives = 115/278 (41%)

Query:    83 ETVNLSERVIE-SIA--GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
             ET ++ +   E S A  G  S  PV  + + L+  H   G PWW  I + TV  R  + P
Sbjct:   158 ETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFP 217

Query:   140 LIVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAA------GCPSLLWF 193
             LIV   ++  RI                 K   D I  ++     A      G       
Sbjct:   218 LIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPL 277

Query:   194 IASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLH 253
             I     Q P F+    ++R M+    P    GG+WWFQ+LT           P+ +  L 
Sbjct:   278 ILPVT-QAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYILPLA 328

Query:   254 YTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFS 313
              T     +    LG E G+     ++ ++ + +M L    +  + P    +YW++++ FS
Sbjct:   329 VTATM--WAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFS 386

Query:   314 IVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
             +VQ   L+ PA RT+L +P +VV    + P     LE+
Sbjct:   387 LVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLES 424

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q3SYV3 OXA1L "Mitochondrial inner membrane protein OXA1L" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 4.6e-14, P = 4.6e-14
 Identities = 78/320 (24%), Positives = 133/320 (41%)

Query:    97 GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAEXXX 156
             G  S  PV  + + L+  H   G PWW  I + TV  R  + PLIV   ++  +I     
Sbjct:   115 GLGSYTPVGLIQNLLEFMHVNLGLPWWGAIAACTVLARCLVFPLIVKGQREAAKIHNHLP 174

Query:   157 XXXXXXXXXXSGKRFVDQISLFRREKRAAGCPS-----LLWFIASFAIQVPCFLVGVTSI 211
                         K   +    +R               L   +     Q P F+    ++
Sbjct:   175 EIQKFSARIREAKLTGNHTEFYRASSEMTFYQKKHDIKLFRPLILPLTQAPIFISFFIAL 234

Query:   212 RRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENG 271
             R M+    P    GG+WWFQ+LT      L    P+ +  L  T     +G   LG E G
Sbjct:   235 REMANLPVPSLQTGGLWWFQDLT------LSD--PIYVLPLVVTATM--WGVLELGAETG 284

Query:   272 LLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL 331
             +     ++ ++++ LM L +  +  + P    +YW++++ FS+ Q   L+ PA RT+L +
Sbjct:   285 MQSSDLQWMRNFIRLMPLAVLPITIHFPTAVFMYWLSSNMFSLGQVACLRIPAVRTVLKI 344

Query:   332 PDKVVPAAARKPEEIDTLETTLESPAKQLKIS--VENLTPKEL-IALSVKFLSKGDKERP 388
             P +VV      P+++   E  L+S  +  K +     L  +E  +   ++  ++G   + 
Sbjct:   345 PQRVV----HDPDKLAPREGFLKSFKQGWKNAEMAHQLQERERRMQNHLELAARGPLRQT 400

Query:   389 I---PLLQLALNKEPDNINA 405
                 PLLQ   N  P+  N+
Sbjct:   401 FAHNPLLQHGKNDPPNTPNS 420

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0097177 "mitochondrial ribosome binding" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0097031 "mitochondrial respiratory chain complex I biogenesis" evidence=ISS

GO:0051262 "protein tetramerization" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WUC5	ALB33_ARATH	No assigned EC number	0.5438	0.6991	0.6978	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.5__850__AT3G44370.1 annotation not avaliable (540 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	565
pfam02096	193	pfam02096, 60KD_IMP, 60Kd inner membrane protein	1e-16
COG0706	314	COG0706, YidC, Preprotein translocase subunit YidC	3e-10
TIGR03592	181	TIGR03592, yidC_oxa1_cterm, membrane protein inser	4e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
PRK11788	389	PRK11788, PRK11788, tetratricopeptide repeat prote	0.002

>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein

 Score = 78.0 bits (193), Expect = 1e-16
 Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 31/211 (14%)

Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL------SGKRFVDQI 175
           W   I+  T+ +R+ LLPL + Q K + ++ EL P +       +        ++   ++
Sbjct: 3   WGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKE-----IQEKYKDDPQKLQQEM 57

Query: 176 SLFRREKR---AAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQN 232
               +E      AGC  +L       IQ+P F+    ++R M+       +  G  W ++
Sbjct: 58  MKLYKEHGVNPLAGCLPML-------IQLPIFIALYRALRNMA--ELRSLETAGFLWIKD 108

Query: 233 LTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLF 292
           L+         I P+L     +   +LS        +       +   K  + +M L   
Sbjct: 109 LSAPDPPYF--ILPILAGLTMFLQQKLSPSQDPPDLQQ------SAQMKIMMYIMPLIFL 160

Query: 293 FLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
           F     P G ++YW+ ++ FS+VQQL ++ P
Sbjct: 161 FFFLNFPAGLVLYWIVSNLFSLVQQLIIRKP 191

Length = 193

>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 37/228 (16%)

Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
           L   L     F+G  W   I+  T+ +R+ + PL     + + ++ EL P++       +
Sbjct: 95  LFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKI-----KEI 149

Query: 167 SGKRFVDQISLFRREKRA----------AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSL 216
             K         ++E             AGC  LL       IQ+P F+     +R    
Sbjct: 150 QEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLL-------IQMPIFIALYYVLRSTVE 202

Query: 217 DGHPGFDCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGL 275
                F    + W  +L+   P  +L  + P+L     +   +LS   +    ++     
Sbjct: 203 LRGAPF----LGWITDLSLPDPDYIL--LLPILAGVTMFLQQKLS-PRNLSTPQD----- 250

Query: 276 LAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
                K  + +M +   F  +  P G ++YW+ ++ FSI+QQ  L  P
Sbjct: 251 --PQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKP 296

Length = 314

>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain

 Score = 53.2 bits (129), Expect = 4e-08
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 43/212 (20%)

Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVD-------- 173
           W   I+  T+ +R+ LLPL + Q K ++++ EL P+L       +  +++ D        
Sbjct: 2   WGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKE-----IQ-EKYKDDPQKLQQE 55

Query: 174 QISLFRREKR--AAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQ 231
            + L++ E      GC  LL       IQ+P F+     +RR     H  F      W Q
Sbjct: 56  MMKLYKEEGVNPLGGCLPLL-------IQMPIFIALYQVLRRSIELRHAPF-----LWIQ 103

Query: 232 NLTEY-PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLP 290
           +L+   P+ +L    P+LM    +   +LS        +           K  + +M + 
Sbjct: 104 DLSAPDPYYIL----PILMGVTMFLQQKLSPSGPP---DP-------AQQKIMMYIMPVM 149

Query: 291 LFFLGYYIPQGSLVYWVTNSSFSIVQQLALKH 322
             F     P G ++YWV ++ F+I+QQL +  
Sbjct: 150 FLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here [Protein fate, Protein and peptide secretion and trafficking]. Length = 181

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429
           + L+ L   +   GD +  +   + AL  +PDN +A   +     + G  EEA+E  E A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474
           +        P   +A   L       G+A  +  K+EE +   E+
Sbjct: 61  LELD-----PDNAKAYYNL-------GLAYYKLGKYEEALEAYEK 93

Length = 100

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431
           AL+   L  GD +  +  L+ AL + P    AL+L+G+  L++G L EA   L  A++
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALA 59

Length = 65

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431
           +   G  E  +   + AL  +PDN  A   +G    + G  EEA+E  E A+ 
Sbjct: 44  YYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 14/131 (10%)

Query: 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLE 427
           +P+ELI  +  +L K   +  I  L+ AL K+P++  A  L+G+  L  G    A + L 
Sbjct: 21  SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELR 80

Query: 428 CAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487
            A+S     G+P     +  L+        A + Q K+++ +  L     L +     ++
Sbjct: 81  KALS----LGYP--KNQVLPLLAR------AYLLQGKFQQVLDELPGKTLLDDEG--AAE 126

Query: 488 AHYYDGLVVLA 498
                GL  L 
Sbjct: 127 LLALRGLAYLG 137

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 19/104 (18%)

Query: 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI---S 431
           L+ + L++GD +    LL+ AL  +P  + A IL+G   L +G    A+E LE  +    
Sbjct: 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALE-RVEEQD 244

Query: 432 KLFLAGHPTEPEAIDLLIVASQWSGVAC-IRQEKWEEGIAHLER 474
             +L       E +  L        + C        EG+  L R
Sbjct: 245 PEYL------SEVLPKL--------MECYQALGDEAEGLEFLRR 274

Length = 389

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	565
PRK02944	255	OxaA-like protein precursor; Validated	100.0
PRK00145	223	putative inner membrane protein translocase compon	100.0
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	100.0
PRK01622	256	OxaA-like protein precursor; Validated	100.0
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	100.0
PRK02463	307	OxaA-like protein precursor; Provisional	100.0
PRK01318	521	membrane protein insertase; Provisional	100.0
PRK01001	795	putative inner membrane protein translocase compon	100.0
PRK03449	304	putative inner membrane protein translocase compon	100.0
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	100.0
PRK01315	329	putative inner membrane protein translocase compon	100.0
PRK02201	357	putative inner membrane protein translocase compon	100.0
PRK00247	429	putative inner membrane protein translocase compon	100.0
KOG1239	372	consensus Inner membrane protein translocase invol	99.96
PRK02654	375	putative inner membrane protein translocase compon	99.94
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.65
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.6
KOG1126	638	consensus DNA-binding cell division cycle control	99.51
PRK11189	296	lipoprotein NlpI; Provisional	99.45
PRK15359	144	type III secretion system chaperone protein SscB;	99.44
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.41
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.39
PRK12370	553	invasion protein regulator; Provisional	99.36
PRK12370	553	invasion protein regulator; Provisional	99.23
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.2
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.2
PRK15359	144	type III secretion system chaperone protein SscB;	99.19
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.19
KOG1126	638	consensus DNA-binding cell division cycle control	99.18
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.18
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.17
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.13
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.13
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.13
KOG1125	579	consensus TPR repeat-containing protein [General f	99.13
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.12
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.11
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.1
KOG0553	304	consensus TPR repeat-containing protein [General f	99.09
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.08
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.08
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.07
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.07
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.05
PRK11189	296	lipoprotein NlpI; Provisional	99.05
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.03
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.01
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.01
KOG1125	579	consensus TPR repeat-containing protein [General f	99.01
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.01
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.98
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.95
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.93
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.82
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.82
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.82
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.82
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.81
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.81
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.81
PRK10803	263	tol-pal system protein YbgF; Provisional	98.81
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.78
PLN02789	320	farnesyltranstransferase	98.76
PRK11906	458	transcriptional regulator; Provisional	98.76
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.74
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.73
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.69
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.67
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.67
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.67
PRK14574	822	hmsH outer membrane protein; Provisional	98.67
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.66
PLN02789	320	farnesyltranstransferase	98.66
KOG0553	304	consensus TPR repeat-containing protein [General f	98.65
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.64
KOG2003	840	consensus TPR repeat-containing protein [General f	98.64
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.64
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.63
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.62
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.62
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.62
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.61
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.61
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.6
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.6
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.58
KOG1129	478	consensus TPR repeat-containing protein [General f	98.57
KOG2076	895	consensus RNA polymerase III transcription factor	98.56
PRK15331	165	chaperone protein SicA; Provisional	98.56
KOG4555	175	consensus TPR repeat-containing protein [Function	98.54
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.5
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.47
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.45
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.44
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.42
PF12688	120	TPR_5: Tetratrico peptide repeat	98.41
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.39
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.39
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.38
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.38
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.35
PRK14574	822	hmsH outer membrane protein; Provisional	98.34
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.32
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.31
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.31
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.31
PF13512	142	TPR_18: Tetratricopeptide repeat	98.29
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.29
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.27
PRK11906	458	transcriptional regulator; Provisional	98.27
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.27
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.26
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.25
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.24
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.24
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.23
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.22
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.21
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.2
KOG1129	478	consensus TPR repeat-containing protein [General f	98.18
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.17
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.17
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.17
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.16
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.15
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.14
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.14
PF13371	73	TPR_9: Tetratricopeptide repeat	98.14
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.14
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.12
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.11
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.1
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.09
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.06
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.04
PF13431	34	TPR_17: Tetratricopeptide repeat	98.02
PRK10803	263	tol-pal system protein YbgF; Provisional	98.0
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.96
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.94
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.92
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.92
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.9
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.9
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.9
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.89
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.88
PF12688	120	TPR_5: Tetratrico peptide repeat	97.88
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.87
PF13428	44	TPR_14: Tetratricopeptide repeat	97.85
KOG2076	895	consensus RNA polymerase III transcription factor	97.82
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.81
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.81
PF13371	73	TPR_9: Tetratricopeptide repeat	97.81
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.81
PF13512	142	TPR_18: Tetratricopeptide repeat	97.8
PRK15331	165	chaperone protein SicA; Provisional	97.78
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.76
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.73
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.73
KOG2003	840	consensus TPR repeat-containing protein [General f	97.71
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.67
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.58
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.57
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.54
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.54
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.53
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.51
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.49
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.47
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.45
KOG4234	271	consensus TPR repeat-containing protein [General f	97.42
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.41
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.39
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.35
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.35
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.32
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.26
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.24
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.23
KOG4234	271	consensus TPR repeat-containing protein [General f	97.19
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.17
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.13
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.06
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.05
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.97
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.95
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.93
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.9
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.87
PF13428	44	TPR_14: Tetratricopeptide repeat	96.85
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.84
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.83
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.81
PLN03218	1060	maturation of RBCL 1; Provisional	96.8
KOG1586	288	consensus Protein required for fusion of vesicles	96.78
PLN03218	1060	maturation of RBCL 1; Provisional	96.7
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.68
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.66
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.65
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.64
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.6
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.58
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.56
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.51
PLN03077	857	Protein ECB2; Provisional	96.4
PRK04841	903	transcriptional regulator MalT; Provisional	96.34
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.31
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.3
PLN03077	857	Protein ECB2; Provisional	96.28
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.26
PF13431	34	TPR_17: Tetratricopeptide repeat	96.25
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.24
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.23
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.22
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.21
PRK04841	903	transcriptional regulator MalT; Provisional	96.18
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.17
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.11
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.09
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.06
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.04
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.96
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.94
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.91
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.81
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.77
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.72
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.63
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.6
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.59
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.49
KOG1585	308	consensus Protein required for fusion of vesicles	95.26
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.26
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.15
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.07
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.05
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.04
KOG4555	175	consensus TPR repeat-containing protein [Function	94.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.85
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.58
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.45
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.34
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.04
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.95
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.8
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.8
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	93.75
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.58
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.57
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.51
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.47
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	93.43
KOG4340	459	consensus Uncharacterized conserved protein [Funct	93.26
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.17
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.03
COG4976	287	Predicted methyltransferase (contains TPR repeat)	92.97
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.81
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.74
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.44
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	92.3
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.99
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	91.92
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	91.9
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	91.65
KOG2471	696	consensus TPR repeat-containing protein [General f	91.52
PRK10941	269	hypothetical protein; Provisional	91.36
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.33
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.16
KOG1915	677	consensus Cell cycle control protein (crooked neck	90.89
KOG1310	758	consensus WD40 repeat protein [General function pr	90.82
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.77
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.76
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.69
KOG1915	677	consensus Cell cycle control protein (crooked neck	90.68
KOG4507	886	consensus Uncharacterized conserved protein, conta	90.66
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	90.48
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	90.39
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	90.34
KOG4507	886	consensus Uncharacterized conserved protein, conta	90.34
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	90.33
PRK10941	269	hypothetical protein; Provisional	90.13
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	90.1
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	89.0
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.62
KOG1586	288	consensus Protein required for fusion of vesicles	88.57
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	88.42
COG3118	304	Thioredoxin domain-containing protein [Posttransla	88.42
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	88.31
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.94
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.93
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	87.77
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	87.46
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	87.38
COG3898	531	Uncharacterized membrane-bound protein [Function u	87.37
KOG1585	308	consensus Protein required for fusion of vesicles	87.06
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	87.04
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.85
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.29
KOG2300	629	consensus Uncharacterized conserved protein [Funct	86.18
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	86.0
KOG2047	835	consensus mRNA splicing factor [RNA processing and	85.91
KOG3364	149	consensus Membrane protein involved in organellar	85.08
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	84.95
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	84.75
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	84.74
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	84.68
KOG2047	835	consensus mRNA splicing factor [RNA processing and	84.18
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	83.42
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	83.38
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	83.28
KOG1550	552	consensus Extracellular protein SEL-1 and related	83.0
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	82.96
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	82.58
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	82.46
KOG2300	629	consensus Uncharacterized conserved protein [Funct	82.44
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	81.37
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	81.27
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	80.87
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	80.46
KOG2471	696	consensus TPR repeat-containing protein [General f	80.24

>PRK02944 OxaA-like protein precursor; Validated

Probab=100.00  E-value=6.7e-42  Score=342.03  Aligned_cols=205  Identities=20%  Similarity=0.327  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc------cHHHHHHH
Q 008435          104 VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK------RFVDQISL  177 (565)
Q Consensus       104 ~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k------~~~e~~~l  177 (565)
                      +..+.++|+++|..+|.|||++|+++|+++|++++|++++|+|+++||++++||++++++||++++      .++|++++
T Consensus        41 ~~p~~~~l~~i~~~~g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~L  120 (255)
T PRK02944         41 VYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQL  120 (255)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999999999999999999999999886532      25688889


Q ss_pred             HHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHHHHHHHHHH
Q 008435          178 FRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNV  257 (565)
Q Consensus       178 ~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~~~~~~~~~  257 (565)
                      |||+    ||+|+. .++|+++|+|||+++|.++|++.     ++.++||+|| ||+.+||   ++|||++++++++++.
T Consensus       121 yk~~----gvnP~~-g~lp~liQ~Pifi~lf~~i~~~~-----~l~~~~flW~-dLs~~Dp---~~iLPil~~~~~~~~~  186 (255)
T PRK02944        121 FQKN----GVNPLA-GCLPIFIQMPILIAFYHAIMRTS-----EISKHSFLWF-DLGQADP---YYILPIVAGITTFIQQ  186 (255)
T ss_pred             HHHc----CCCchH-HHHHHHHHHHHHHHHHHHHHhhH-----HHhhcCCCcc-ccCcchH---HHHHHHHHHHHHHHHH
Confidence            9997    788874 67999999999999999999985     5788999999 9999999   8999999999999998


Q ss_pred             HHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCHHHHhHhCC
Q 008435          258 QLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL  331 (565)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~~~rk~l~i  331 (565)
                      +++.....    +  .+   ..++.+++++++.+++++.++|+|+.+||++||+|+++|++++++|.+|+..+-
T Consensus       187 ~~~~~~~~----~--~~---~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~~~~~~~~~~  251 (255)
T PRK02944        187 KLMMAGTA----G--QN---PQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASKAG  251 (255)
T ss_pred             HhcccCCC----C--CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchhhcC
Confidence            87543211    1  11   124556777777777788999999999999999999999999999999987764

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=2e-41  Score=332.69  Aligned_cols=191  Identities=19%  Similarity=0.275  Sum_probs=166.3

Q ss_pred             hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHHHHHHHHHHHhhhcCCCchhHHH
Q 008435          117 FTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLLWFI  194 (565)
Q Consensus       117 ~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k--~~~e~~~l~~k~~~~~g~~~~~~~~  194 (565)
                      .+|+|||++|+++|+++|++++|++++|+|+++||++++||++++++|+++++  .++|++++|||+    ||+|+. .+
T Consensus        26 ~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~~~e~~~Lyk~~----~inp~~-~~  100 (223)
T PRK00145         26 NPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEK----GVNPLG-GC  100 (223)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHh----CCCchH-HH
Confidence            35899999999999999999999999999999999999999999999887654  367899999997    788874 67


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHHHHHHHHHHHHhcccCcCCcccchhh
Q 008435          195 ASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLG  274 (565)
Q Consensus       195 lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (565)
                      +|+++|+|||+++|+++|+++     ++.++|++||+||+.+||   ++|||++++++++++.+++.+..   .  .+  
T Consensus       101 lp~liQiPif~~l~~~i~~~~-----~~~~~~flW~~dLt~~Dp---~~iLPil~~~~~~l~~~~~~~~~---~--~~--  165 (223)
T PRK00145        101 LPLLIQWPILIALYYVFNNLT-----GINGVSFLWIKDLAKPDI---TWILPILSGATTYLSGYLMTKAD---S--SQ--  165 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-----hccCCCccChhhccCcch---HHHHHHHHHHHHHHHHHHcCCCC---h--hH--
Confidence            999999999999999999986     578899999999999999   89999999999999998875431   1  11  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCHHHHhHh
Q 008435          275 LLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML  329 (565)
Q Consensus       275 ~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~~~rk~l  329 (565)
                        .+.++.+++++++.+++++.++|+|+++||++||+|+++|++++|++..||..
T Consensus       166 --~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~~l~~~~~~~~~  218 (223)
T PRK00145        166 --AGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYFIKKLELKKKV  218 (223)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence              23456677777777778889999999999999999999999999887766653

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=100.00  E-value=2.6e-39  Score=313.95  Aligned_cols=191  Identities=29%  Similarity=0.492  Sum_probs=162.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHHHHHHHHHHHhhhcCCCchhHHHHHHH
Q 008435          121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLLWFIASFA  198 (565)
Q Consensus       121 pW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k--~~~e~~~l~~k~~~~~g~~~~~~~~lp~l  198 (565)
                      +||++|+++|+++|++++|++++|+|+++||++++||++++++|+++++  .++|++++|||+    ||+|++ .++|++
T Consensus         2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~----~~~p~~-~~~~~l   76 (198)
T PF02096_consen    2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKH----GVNPLK-GCLPPL   76 (198)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc----CCCcHH-HHHHHH
Confidence            8999999999999999999999999999999999999999999886543  367888889986    899884 678999


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCC--cchhhHHHHHHHHHHHHHHHHhcccCcCCcccchhhHH
Q 008435          199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPH--GVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLL  276 (565)
Q Consensus       199 iQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp--~~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (565)
                      +|+|||+++|.++|+|+.  +|++.++|++||+||+.+||  +.+++|||++++++++++++++.+ ....+ +..   .
T Consensus        77 iq~Pif~~~~~~lr~~~~--~~~~~~~g~lw~~dL~~~D~~~~~p~~iLPil~~~~~~~~~~~~~~-~~~~~-~~~---~  149 (198)
T PF02096_consen   77 IQIPIFIGLFRALRRMAE--VPSLATGGFLWFPDLTAPDPTMGLPYFILPILAGASMFLNQELSMK-NSKQK-SPQ---Q  149 (198)
T ss_pred             HHHHHHHHHHHHHHHHHH--hcccccCceeChHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHh-ccccC-Ccc---c
Confidence            999999999999999986  78999999999999999992  112899999999999999999875 21111 111   1


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCH
Q 008435          277 AKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP  323 (565)
Q Consensus       277 ~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~  323 (565)
                      .+.+|.+++++++.+++++.++|+|+.+||++||+|+++|++++|++
T Consensus       150 ~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~  196 (198)
T PF02096_consen  150 AKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRP  196 (198)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            23456666677777778889999999999999999999999999875

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>PRK01622 OxaA-like protein precursor; Validated

Probab=100.00  E-value=6e-39  Score=321.24  Aligned_cols=198  Identities=20%  Similarity=0.302  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCCCCCCCCCCccc-------HH
Q 008435          104 VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGKR-------FV  172 (565)
Q Consensus       104 ~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~----~~k~~~l~P~l~~i~~~~~~~k~-------~~  172 (565)
                      +..+.++++++|+.+|.|||++|+++|+++|++++|++++|+|+    ++||++++|+++++++||+++++       ++
T Consensus        42 ~~p~~~ll~~l~~~~~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~kyk~~~d~~~~~~~~~  121 (256)
T PRK01622         42 VYPFSFLIQFVAHHIGGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQK  121 (256)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHHHhccCCHHHHHHHHH
Confidence            45566899999999999999999999999999999999999999    88999999999999998865433       45


Q ss_pred             HHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHHHHH
Q 008435          173 DQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGL  252 (565)
Q Consensus       173 e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~~~~  252 (565)
                      |++++|||+    ||+|+...++|+++|+|||+++|+++|++     |++.++||+|| ||+.+|     +|||++++++
T Consensus       122 e~~~Lyk~~----gi~P~~~g~lp~liQ~Pif~~lf~~lr~~-----~~l~~~~flW~-dLs~~D-----~ILPil~~~~  186 (256)
T PRK01622        122 EMMELYKSG----NINPLAMGCLPLLIQMPILSAFYYAIRRT-----EEIASHSFLWF-NLGHAD-----HILPIIAGLT  186 (256)
T ss_pred             HHHHHHHHc----CCCCchhhHHHHHHHHHHHHHHHHHHHhC-----hhccCCCceee-CCcchh-----HHHHHHHHHH
Confidence            677888886    78887657799999999999999999997     47889999999 999988     6999999999


Q ss_pred             HHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCH
Q 008435          253 HYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP  323 (565)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~  323 (565)
                      ++++++++.....    ++.+   .+.+|.+++++++.+++++.++|+|+++||++||+|+++|++++++.
T Consensus       187 ~~~~~~~~~~~~~----~~~q---~~~~k~m~~~~pi~~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~  250 (256)
T PRK01622        187 YFIQMKVSQSNGT----SPEQ---VQMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQTIVLRKV  250 (256)
T ss_pred             HHHHHHHcCCCCC----ChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999987753211    1111   23456667777777788889999999999999999999999999765

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=100.00  E-value=4.1e-39  Score=307.59  Aligned_cols=179  Identities=26%  Similarity=0.442  Sum_probs=156.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccc--HHHHHHHHHHHhhhcCCCchhHHHHHHH
Q 008435          121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR--FVDQISLFRREKRAAGCPSLLWFIASFA  198 (565)
Q Consensus       121 pW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k~--~~e~~~l~~k~~~~~g~~~~~~~~lp~l  198 (565)
                      +||++|+++|+++|++++|++++|+|+++||++++||++++++|++++++  ++|++++|||+    ||+|+. .++|++
T Consensus         1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~----~~~p~~-~~lp~l   75 (181)
T TIGR03592         1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEE----GVNPLG-GCLPLL   75 (181)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh----CCCcHH-HHHHHH
Confidence            69999999999999999999999999999999999999999998876543  57889999987    788875 578999


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHHHHHHHHHHHHhcccCcCCcccchhhHHHH
Q 008435          199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAK  278 (565)
Q Consensus       199 iQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  278 (565)
                      +|+|||+++|.++|++.     ++.++|++||+||+.+||   +++||++++++++++.+++....+    ++      +
T Consensus        76 iQ~Pif~~~~~~lr~~~-----~l~~~~flW~~dL~~~Dp---~~iLPii~~~~~~~~~~~~~~~~~----~~------~  137 (181)
T TIGR03592        76 IQMPIFIALYQVLRRSI-----ELRHAPFLWIKDLSAPDP---YYILPILMGATMFLQQKLSPSGPP----DP------A  137 (181)
T ss_pred             HHHHHHHHHHHHHHhhH-----HhccCCCcCccccCcccH---HHHHHHHHHHHHHHHHHhcCCCCC----CH------H
Confidence            99999999999999974     789999999999999999   899999999999999998755321    11      2


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcC
Q 008435          279 YYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKH  322 (565)
Q Consensus       279 ~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~  322 (565)
                      .+|.+++++++.+++++.++|+|+.+||++||+|+++|++++|.
T Consensus       138 ~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~  181 (181)
T TIGR03592       138 QQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR  181 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            24555667777777788999999999999999999999999863

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK02463 OxaA-like protein precursor; Provisional

Probab=100.00  E-value=6.9e-39  Score=326.46  Aligned_cols=212  Identities=20%  Similarity=0.269  Sum_probs=175.2

Q ss_pred             hHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCCCCCCCCCCccc-------H
Q 008435          103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGKR-------F  171 (565)
Q Consensus       103 P~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~----~~k~~~l~P~l~~i~~~~~~~k~-------~  171 (565)
                      -+..+.++++++|+.+|++||++|+++|++||++++|++++|+++    ++||+.++||++++++||+++++       +
T Consensus        41 l~~p~~~~l~~i~~~~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk~~~~~~~~~~~q  120 (307)
T PRK02463         41 LGAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNATTQEEKMAAQ  120 (307)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhcCCChHHHHHHH
Confidence            456677899999999999999999999999999999999988875    68999999999999999876432       4


Q ss_pred             HHHHHHHHHHhhhcCCCchhH-HHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHHH
Q 008435          172 VDQISLFRREKRAAGCPSLLW-FIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMA  250 (565)
Q Consensus       172 ~e~~~l~~k~~~~~g~~~~~~-~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~~  250 (565)
                      +|++++|||+    |++|+.. .++|+++|+|||+++|+++|..     |++.+++|+|| ||+.+     +++||++++
T Consensus       121 ~em~~lyke~----ginp~~~~GCLP~LIQ~PIf~aly~ai~~~-----~~l~~~~flwi-dL~~p-----~~iLpii~~  185 (307)
T PRK02463        121 TELMAAQREN----GISMLGGIGCLPLLIQMPFFSALYFAAQYT-----KGVSTSTFLGI-DLGSP-----SLVLTAIIG  185 (307)
T ss_pred             HHHHHHHHHc----CCCCccccchHHHHHHHHHHHHHHHHHhcc-----hhhccCCeeee-ecCch-----hHHHHHHHH
Confidence            6788999997    4555432 2489999999999999999853     68999999999 99875     479999999


Q ss_pred             HHHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhc---CHHHHh
Q 008435          251 GLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK---HPASRT  327 (565)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~---~~~~rk  327 (565)
                      ++++++.+++....+  .+      ..+.||.|++++++++++++.++|+|+.+||++||+|+++|+++++   +|.+|+
T Consensus       186 v~~~~q~~~~~~~~~--~~------q~~~mk~m~~~~Pim~~~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~~pk~~~  257 (307)
T PRK02463        186 VLYFFQSWLSMMGVP--EE------QREQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQQLITTYILKPRLRK  257 (307)
T ss_pred             HHHHHHHHHhccCCC--hh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            999999987654321  11      1245677888999999999999999999999999999999999976   788888


Q ss_pred             HhCCCCCCCC
Q 008435          328 MLGLPDKVVP  337 (565)
Q Consensus       328 ~l~ip~~~~~  337 (565)
                      ...-..+.+|
T Consensus       258 ~i~~e~~~~p  267 (307)
T PRK02463        258 QIAEEFAKNP  267 (307)
T ss_pred             HHHHHhhcCC
Confidence            7644444444

>PRK01318 membrane protein insertase; Provisional

Probab=100.00  E-value=1.1e-38  Score=346.53  Aligned_cols=200  Identities=20%  Similarity=0.325  Sum_probs=171.1

Q ss_pred             CcchHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHHHHHHH
Q 008435          100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISL  177 (565)
Q Consensus       100 ~~~P~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k--~~~e~~~l  177 (565)
                      +++.+..+.++|+++|.++| |||++||++|+++|++++|++++|.|+++||++++|+++++++|+++++  .++|+|++
T Consensus       302 ~~~~~~pl~~~L~~i~~~~g-~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~k~~~e~~~L  380 (521)
T PRK01318        302 LWFITKPLFWLLDFLHSFVG-NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQKMQQEMMEL  380 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHHHHHHHHHHH
Confidence            34468889999999999999 9999999999999999999999999999999999999999999987664  47899999


Q ss_pred             HHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCcc-ccccCCCCCCcchhhHH-----HHHHHH
Q 008435          178 FRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGSIF-----PVLMAG  251 (565)
Q Consensus       178 ~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~l-Wf~dLt~~Dp~~~~~iL-----Pil~~~  251 (565)
                      |||+    ||+|+. .++|+++|+||||++|.+++.+.     .+..++|+ ||+||+.+||   ++||     |+++++
T Consensus       381 YKk~----~vnPl~-gclp~liQiPifialy~~l~~~~-----el~~~~fl~Wi~DLs~~Dp---~~il~~~~lPil~~~  447 (521)
T PRK01318        381 YKKE----KVNPLG-GCLPILIQIPIFFALYKVLLVSI-----ELRHAPFIGWIHDLSAPDP---YFILHIGLLPILMGI  447 (521)
T ss_pred             HHHc----CCCccc-hhHHHHHHHHHHHHHHHHHHHHH-----HhccCchheeecccccccc---chhHHHHHHHHHHHH
Confidence            9998    566653 45999999999999999999986     46677887 9999999999   7788     999999


Q ss_pred             HHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCHHH
Q 008435          252 LHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPAS  325 (565)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~~~  325 (565)
                      +++++++++...      ++   +.   ++++|.+|++.+++++.++|+|+++||++||+++++|++++++...
T Consensus       448 ~~~~~~~l~~~~------~~---~~---q~kim~~mpi~~~~~~~~~PagL~lYW~~sn~~si~Q~~~l~~~~~  509 (521)
T PRK01318        448 TMFLQQKLNPTP------TD---PM---QAKIMKFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQYLINRRLE  509 (521)
T ss_pred             HHHHHHHhcCCC------CC---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999887432      11   11   2334555777777788999999999999999999999999976543

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.1e-37  Score=339.48  Aligned_cols=201  Identities=18%  Similarity=0.309  Sum_probs=164.6

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHHHHHHHHHHHhhh
Q 008435          107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRA  184 (565)
Q Consensus       107 i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k--~~~e~~~l~~k~~~~  184 (565)
                      +.+++.++|..+| |||++||++||+||++++|++++|+++++||+.++|+|++|++||++++  .++|+|++|||+   
T Consensus       562 L~~ll~~fh~l~G-nwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~---  637 (795)
T PRK01001        562 LFIIMKFFKFLTG-SWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTN---  637 (795)
T ss_pred             HHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHc---
Confidence            3566688999999 9999999999999999999999999999999999999999999998764  478999999998   


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCcc--ccccCCCCCCcc-----------hhhHHHHHHHH
Q 008435          185 AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW--WFQNLTEYPHGV-----------LGSIFPVLMAG  251 (565)
Q Consensus       185 ~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~l--Wf~dLt~~Dp~~-----------~~~iLPil~~~  251 (565)
                       ||+|+ ..++|+|+|+||||++|+++|++.     .+...+|+  |++||+.+||.+           .+.||||++++
T Consensus       638 -GVNPl-~GCLPmLIQmPIFfALY~vL~~si-----eLRgasFLpgWI~DLSapDplf~~~~~i~FiGd~i~ILPILmgv  710 (795)
T PRK01001        638 -KVNPI-TGCLPLLIQLPFLIAMFDLLKSSF-----LLRGASFIPGWIDNLTAPDVLFSWETPIWFIGNEFHLLPILLGV  710 (795)
T ss_pred             -CCCch-HHHHHHHHHHHHHHHHHHHHHHhH-----HhcCCchhhhhHhhccCCCccccccccccccccchhHHHHHHHH
Confidence             56655 355999999999999999999976     45556676  999999999832           13499999999


Q ss_pred             HHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCH
Q 008435          252 LHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP  323 (565)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~  323 (565)
                      +++++++++..... +..+++    .+.++.|+.+|+++++|++.++|+||++||++||+++++|++++++.
T Consensus       711 tmflqqkls~~~~~-dp~t~q----q~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~  777 (795)
T PRK01001        711 VMFAQQKISSLKRK-GPVTDQ----QRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKI  777 (795)
T ss_pred             HHHHHHHhcccCCC-Cccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            99999998764321 111111    11223444567777777889999999999999999999999999764

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.9e-36  Score=307.49  Aligned_cols=217  Identities=19%  Similarity=0.261  Sum_probs=168.3

Q ss_pred             CCCcchHHHHHHHHHHHh-----hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccc--
Q 008435           98 EESSLPVRALISFLDTYH-----DFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR--  170 (565)
Q Consensus        98 ~~~~~P~~~i~~~L~~lh-----~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k~--  170 (565)
                      +.+|+|++++.++++.++     ..+|+|||++|+++|+++|++++|++++|+|+++||++++|+++++++||++++.  
T Consensus         3 ~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~~   82 (304)
T PRK03449          3 DFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKM   82 (304)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHHH
Confidence            568999999998888754     4589999999999999999999999999999999999999999999998876543  


Q ss_pred             HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCC----CCCc----------------ccCcc--
Q 008435          171 FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGH----PGFD----------------CGGIW--  228 (565)
Q Consensus       171 ~~e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~----~~l~----------------~~g~l--  228 (565)
                      ++|++++|||+    ||+|+ ..++|+++|+|||+++|+++|+|+....    ++.+                .++|+  
T Consensus        83 ~~e~~~Lyk~~----gvnP~-~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~  157 (304)
T PRK03449         83 ALEMQKLQKEH----GFNPI-LGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDA  157 (304)
T ss_pred             HHHHHHHHHHc----CCCch-HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhh
Confidence            67899999997    78877 4679999999999999999999854210    1110                01344  


Q ss_pred             ---------ccc----------cCCCCCCcchhhHHHHHHHHHHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHH
Q 008435          229 ---------WFQ----------NLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTL  289 (565)
Q Consensus       229 ---------Wf~----------dLt~~Dp~~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~l  289 (565)
                               |++          |++..|.-....++|++++++++++.+++.......  ++...++...+|.|++++++
T Consensus       158 ~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~--~~~~~~~~~m~k~M~~~mP~  235 (304)
T PRK03449        158 RLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAE--AAANPQTAMMNKLALWVFPL  235 (304)
T ss_pred             hhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccCcchHHHHHHHHHHhHH
Confidence                     332          444444311235688999999999998876542211  11111222234667788899


Q ss_pred             HHHHhhcccchhhhHHhhhhhHHHHHHHHHhc
Q 008435          290 PLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK  321 (565)
Q Consensus       290 p~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~  321 (565)
                      ++++++.++|+|+.+||++||+|+++|+++++
T Consensus       236 m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~  267 (304)
T PRK03449        236 GVLVGGPFLPLAILLYWVSNNIWTFGQQHYVF  267 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999985

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=100.00  E-value=2e-35  Score=304.60  Aligned_cols=213  Identities=20%  Similarity=0.324  Sum_probs=179.2

Q ss_pred             cCCCCcchHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-Cccc--HH
Q 008435           96 AGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL-SGKR--FV  172 (565)
Q Consensus        96 g~~~~~~P~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~-~~k~--~~  172 (565)
                      ....+|++...+..+++++|.+.|++||++|+++|++||++++|++.++.++++||+.++|+++++++|++ +++.  ++
T Consensus        84 ~~~~f~~~~~~~~~~~~~~~~~~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~~~~q~  163 (314)
T COG0706          84 DYGWFWNILAPLFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDKQKQQQ  163 (314)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHH
Confidence            34667888777889999999999999999999999999999999999999999999999999999999998 5533  57


Q ss_pred             HHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCcc-ccccCCCCCCcchhhHHHHHHHH
Q 008435          173 DQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGSIFPVLMAG  251 (565)
Q Consensus       173 e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~l-Wf~dLt~~Dp~~~~~iLPil~~~  251 (565)
                      |+|++|+|++    ++|+. .++|+++|+|||+++|.++++..     .+...+|+ |++||+.+||.+ .+++|+++++
T Consensus       164 e~~~Lyk~~~----vnPl~-gclP~liQ~Pifialy~~l~~~~-----~l~~~~f~~w~~dl~~~dp~~-~~~~pii~gv  232 (314)
T COG0706         164 EMMKLYKKHK----VNPLA-GCLPLLIQMPIFIALYYVLRSTV-----ELRGAPFLGWITDLSLPDPDY-ILLLPILAGV  232 (314)
T ss_pred             HHHHHHHHhC----CCchh-hHHHHHHHHHHHHHHHHHHHhcc-----cccccchhhhhhcccCCCCch-hhHHHHHHHH
Confidence            9999999984    44442 44999999999999999999986     34455555 999999999921 2355999999


Q ss_pred             HHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCHHHHh
Q 008435          252 LHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRT  327 (565)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~~~rk  327 (565)
                      +++.+.+++....+    + .+.   +.+++++.+|++.+.+++..+|+||.+||++||+|+++|+++++++..++
T Consensus       233 ~~f~q~~ls~~~~~----~-~q~---~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~~~~~  300 (314)
T COG0706         233 TMFLQQKLSPRNLS----T-PQD---PQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKPLEKK  300 (314)
T ss_pred             HHHHHHHhccccCC----c-ccC---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Confidence            99999999876433    1 111   23566777788888788899999999999999999999999999998877

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.1e-35  Score=304.65  Aligned_cols=217  Identities=22%  Similarity=0.353  Sum_probs=166.1

Q ss_pred             CCCcchHHHHH-HHHHHHhh--------hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc
Q 008435           98 EESSLPVRALI-SFLDTYHD--------FTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG  168 (565)
Q Consensus        98 ~~~~~P~~~i~-~~L~~lh~--------~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~  168 (565)
                      +...+|+.++. .++.++|.        .+|+|||++|+++|+++|++++|++++|+|+++||++++||++++++||+++
T Consensus         9 ~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~kyk~~   88 (329)
T PRK01315          9 SAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGD   88 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhH
Confidence            44678887754 55555563        4789999999999999999999999999999999999999999999988766


Q ss_pred             cc--HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCC----------CCCCcccCccccccCCCC
Q 008435          169 KR--FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDG----------HPGFDCGGIWWFQNLTEY  236 (565)
Q Consensus       169 k~--~~e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~----------~~~l~~~g~lWf~dLt~~  236 (565)
                      ++  ++|++++|||+    ||+|+ ..++|+++|+|||+++|++||+++...          .+++..+.++|+ +|...
T Consensus        89 ~~~~~~e~~~Lykk~----ginp~-~gclp~liQ~Pif~alf~~l~~~~~~~~~~~~~~~~~~~s~~~~~~fg~-~L~~~  162 (329)
T PRK01315         89 RERMSQEMMKLYKET----GTNPL-SSCLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGA-PLAAT  162 (329)
T ss_pred             HHHHHHHHHHHHHHc----CCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccc-ccccc
Confidence            43  67899999997    78887 467999999999999999999876421          224445566665 34322


Q ss_pred             -----CCc-----chhhHHHHHHHHHHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHh
Q 008435          237 -----PHG-----VLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYW  306 (565)
Q Consensus       237 -----Dp~-----~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW  306 (565)
                           +++     ..+.|||+++++++|++..........+ ++ ..+++.+.+|.|++++++++++++.++|+||.+||
T Consensus       163 f~~~~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~-~~-~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~LYW  240 (329)
T PRK01315        163 FLQALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPP-EA-KTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYW  240 (329)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 121     2246889999999998875433221111 11 11233455677888999999999999999999999


Q ss_pred             hhhhHHHHHHHHHhcC
Q 008435          307 VTNSSFSIVQQLALKH  322 (565)
Q Consensus       307 ~~s~~~sl~Q~~~l~~  322 (565)
                      ++||+|+++|++++.+
T Consensus       241 ~~snl~si~Qq~~v~r  256 (329)
T PRK01315        241 LTSNVWTMGQQFYVIR  256 (329)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998643

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=4.1e-35  Score=302.65  Aligned_cols=218  Identities=11%  Similarity=0.154  Sum_probs=167.9

Q ss_pred             CCcchHHHHHHHH---HHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc-cc----
Q 008435           99 ESSLPVRALISFL---DTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG-KR----  170 (565)
Q Consensus        99 ~~~~P~~~i~~~L---~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~-k~----  170 (565)
                      ...+|++++...+   +.+|...|+|||++|+++|+++|++++|++++|+++++||+++|||++++++|++++ ++    
T Consensus       107 ~~v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~~d~~~~  186 (357)
T PRK02201        107 LFVYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMK  186 (357)
T ss_pred             HHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCHHHH
Confidence            4566766655443   345577899999999999999999999999999999999999999999999988755 22    


Q ss_pred             ---HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCC------cch
Q 008435          171 ---FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPH------GVL  241 (565)
Q Consensus       171 ---~~e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp------~~~  241 (565)
                         ++|++++|+|+    ||+|+. .++|+++|+|||+++|+++|.+.     ++....|+|+ ||+.+|+      ++.
T Consensus       187 ~k~q~e~~~Lykk~----ginP~~-gclP~LiQ~Pif~aly~vl~~~~-----~l~~~~flgi-dLs~~~~~~~~~~~~~  255 (357)
T PRK02201        187 QRKQQEIQELYKKH----NISPFS-PFVQMFVTLPIFIAVYRVVQSLP-----SIKVTTWLGI-DLSATSWQEIFAGNWI  255 (357)
T ss_pred             HHHHHHHHHHHHHc----CCCcHH-HHHHHHHHHHHHHHHHHHHHhhH-----hhccCCCccc-ccCCCChhhhccccch
Confidence               57889999997    788774 67999999999999999999885     5677889999 9999874      123


Q ss_pred             hhHHHHHHHHHHHHHHHHhcc----cCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHH
Q 008435          242 GSIFPVLMAGLHYTNVQLSFG----ASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQ  317 (565)
Q Consensus       242 ~~iLPil~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~  317 (565)
                      +.++++++++++++++.+...    .......+..+.+..+.++.|+.+|++.+++++..+|+|+.+||++||+|+++|+
T Consensus       256 ~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq  335 (357)
T PRK02201        256 YLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQT  335 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777777777765432    1110000111112234456778888888888999999999999999999999999


Q ss_pred             HHhcCHHHHh
Q 008435          318 LALKHPASRT  327 (565)
Q Consensus       318 ~~l~~~~~rk  327 (565)
                      +++++-.-|+
T Consensus       336 ~~i~~~~k~~  345 (357)
T PRK02201        336 LGIHYFKKRK  345 (357)
T ss_pred             HHHHHHHHHH
Confidence            9998653333

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=100.00  E-value=2.7e-33  Score=294.11  Aligned_cols=226  Identities=19%  Similarity=0.262  Sum_probs=160.4

Q ss_pred             CCCcchHHHHHHHHHH-Hhhh----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccc--
Q 008435           98 EESSLPVRALISFLDT-YHDF----TGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR--  170 (565)
Q Consensus        98 ~~~~~P~~~i~~~L~~-lh~~----tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k~--  170 (565)
                      +.+.+|+++|.+++.. ++..    .|+|||++|+++||+||++++|++++|.++++||+.++|++++|+++|+++++  
T Consensus         3 ~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~e   82 (429)
T PRK00247          3 DIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEA   82 (429)
T ss_pred             cHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCHH
Confidence            3467888877665553 4433    36899999999999999999999999999999999999999999998876543  


Q ss_pred             -----HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcc---------------------
Q 008435          171 -----FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDC---------------------  224 (565)
Q Consensus       171 -----~~e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~---------------------  224 (565)
                           ++|++++||++    ||+|+ ..++|+|||+|||+++|++||+|+. +.+|+.+                     
T Consensus        83 ~~~~~qqe~~~LyKe~----ginP~-~gcLP~LIQiPIfigLy~vir~ma~-~~~Gl~~~~~~~ig~l~~~~v~sfl~a~  156 (429)
T PRK00247         83 SIRELQQKQKDLNKEY----GYNPL-AGCVPALIQIPVFLGLYQVLLRMAR-PEGGLENPVHQPIGFLTSEEVESFLQGR  156 (429)
T ss_pred             HHHHHHHHHHHHHHHc----CCCch-HHHHHHHHHHHHHHHHHHHHHhccc-cCCccccccccccccCCHHHHHHHHhcc
Confidence                 45778888887    78777 4679999999999999999999984 4444432                     


Q ss_pred             --------------cCccccccCCCCCCcchhhHHHHHH--HHHHHHHHHHhcccCcC--CcccchhhHHHHHHHHHHHH
Q 008435          225 --------------GGIWWFQNLTEYPHGVLGSIFPVLM--AGLHYTNVQLSFGASSL--GKENGLLGLLAKYYKSYLNL  286 (565)
Q Consensus       225 --------------~g~lWf~dLt~~Dp~~~~~iLPil~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~k~~l~~  286 (565)
                                    ++++|+ +.+.+|.  .+++||+++  +++++++..++......  ...++....+.|.|..|+++
T Consensus       157 ~fGvpL~~~~sm~~e~~~~~-~~~~~~v--~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~  233 (429)
T PRK00247        157 VFNVPLPAYVSMPAEQLAYL-GTTQATV--LAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAIL  233 (429)
T ss_pred             ccCCCcccccccchhhhhhc-cCCccch--HHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence                          222333 2333332  247888554  44455666666543211  11112122234555555566


Q ss_pred             HHHHHHHhhcc--cchhhhHHhhhhhHHHHHHHHHhcCHHHHhHhCCCC
Q 008435          287 MTLPLFFLGYY--IPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPD  333 (565)
Q Consensus       287 ~~lp~~~~~~~--~Pagl~lYW~~s~~~sl~Q~~~l~~~~~rk~l~ip~  333 (565)
                      +++++++++++  +|+||+|||++||+|+++|++++. ..++++..+++
T Consensus       234 ~Pim~~~~g~~~~~PaallLYWv~snlwtl~Qq~i~~-~~l~~~~P~~~  281 (429)
T PRK00247        234 APIFPLSLGLTGPFPTAIALYWVANNLWTLIQNIIMY-LILERKYPLTD  281 (429)
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHH-HHHHHhcCCCc
Confidence            77666665544  899999999999999999999885 45677666644

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.8e-29  Score=262.64  Aligned_cols=219  Identities=27%  Similarity=0.436  Sum_probs=182.6

Q ss_pred             CCCcchHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc----c---
Q 008435           98 EESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK----R---  170 (565)
Q Consensus        98 ~~~~~P~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k----~---  170 (565)
                      ..+|.|+..+++.|+.+|+++|+|||++|+..|+.+|..++|+.+.++|+.+|++++.|+++.+.++....+    .   
T Consensus        78 ~~~~~p~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~  157 (372)
T KOG1239|consen   78 LSSWRPVATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLS  157 (372)
T ss_pred             hcccCchhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHH
Confidence            678999999999999999999999999999999999999999999999999999999999998877543221    1   


Q ss_pred             -HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHH
Q 008435          171 -FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLM  249 (565)
Q Consensus       171 -~~e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~  249 (565)
                       ++++.++++++    |++| ++..+| ++|.|+|+++|++||.|+ .+++++.++|++||+||+.+||   ++++|+++
T Consensus       158 ~q~~~~~l~~~~----~v~~-~~l~~~-v~q~~l~~sff~air~ma-~~v~~f~t~g~~wf~dLt~~dp---~~ilp~it  227 (372)
T KOG1239|consen  158 WQEEQKLLVKKY----GVKP-KQLALP-VVQGPLFISFFMAIRVMA-VPVPSFTTGGLLWFPDLTGPDP---LYILPGIT  227 (372)
T ss_pred             HHHHHHhhhhhc----CCCc-chhhhh-hhcchhHHHHHHHHHHhh-ccccccchhhHHhcccccccCc---chhhHHHH
Confidence             34566777776    7776 655555 999999999999999999 8999999999999999999999   89999999


Q ss_pred             HHHHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCHHHHhHh
Q 008435          250 AGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML  329 (565)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~~~rk~l  329 (565)
                      ++++..+++++......   ..   .+...|+.+..++++-.+.++.++|.++++||+    |+++|..++|. .+|+.+
T Consensus       228 ~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~-~vr~~l  296 (372)
T KOG1239|consen  228 LATLTLFIELGAETGLS---SS---KLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL----FSLVQGLVLRS-EVRKKL  296 (372)
T ss_pred             HHHHHHHHHHHHHhhhh---cc---cccchhHHHHHHhhhhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH-HHHHhc
Confidence            99999999887543111   00   111234444444444444456799999999999    99999999999 999999


Q ss_pred             CCCCCCCC
Q 008435          330 GLPDKVVP  337 (565)
Q Consensus       330 ~ip~~~~~  337 (565)
                      |+|+.+++
T Consensus       297 ~~~~~~~~  304 (372)
T KOG1239|consen  297 GIPDVPSI  304 (372)
T ss_pred             CCCCCCCC
Confidence            99999886

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=99.94  E-value=1.6e-26  Score=231.27  Aligned_cols=209  Identities=18%  Similarity=0.217  Sum_probs=151.7

Q ss_pred             CcchHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCCCCCCCcc--cHHH
Q 008435          100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLP----PPFPPPLSGK--RFVD  173 (565)
Q Consensus       100 ~~~P~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~----~i~~~~~~~k--~~~e  173 (565)
                      +|+-...+..+|+++|..+| +||++|+++|+++|++++|++++|+|+++||+.+||+|+    +|++||++++  .++|
T Consensus         6 g~i~~~il~~iL~f~y~~vg-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKdDpqk~QqE   84 (375)
T PRK02654          6 GFISNNVMLPILDFFYGIVP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKNDPQKQQEE   84 (375)
T ss_pred             HHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcCCHHHHHHH
Confidence            44444567789999999998 999999999999999999999999999999999999996    5888887664  3689


Q ss_pred             HHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccC------------------------------------
Q 008435          174 QISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLD------------------------------------  217 (565)
Q Consensus       174 ~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~------------------------------------  217 (565)
                      ++++|||++     +|+ ..++|+++|+|||+++|.+||.....                                    
T Consensus        85 mmkLYKE~G-----NPl-aGCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~p~~qi~~v~~~~~~~~~~~i~~~~~  158 (375)
T PRK02654         85 MGKLMKEFG-----NPL-AGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVLPSEQIAAVQPQPFKSKPQNIFITDG  158 (375)
T ss_pred             HHHHHHHcC-----CCh-hhHHHHHHHHHHHHHHHHHHHhCccccccceeecccCCHHHHhhhcCCCcCCCCceEEEecC
Confidence            999999984     343 34599999999999999999984310                                    


Q ss_pred             ------------------------------------------------------------------------------CC
Q 008435          218 ------------------------------------------------------------------------------GH  219 (565)
Q Consensus       218 ------------------------------------------------------------------------------~~  219 (565)
                                                                                                    .+
T Consensus       159 ~h~~~~a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~~~~~~~~g~~~al~pgd~ti~~~i  238 (375)
T PRK02654        159 VHFPVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVKVSEDGTIEALAPGDATIQGTI  238 (375)
T ss_pred             ccceEEEEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCceeEEECCCCcEEEecCCceEEEEee
Confidence                                                                                          02


Q ss_pred             CCC-cccCccccccCCCC----CCc---chhhHHHHHHHHHHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHH
Q 008435          220 PGF-DCGGIWWFQNLTEY----PHG---VLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPL  291 (565)
Q Consensus       220 ~~l-~~~g~lWf~dLt~~----Dp~---~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~  291 (565)
                      ||+ ...|||++.-|...    |.|   |=..++-+..+++.|+|+.++...++.   +.++    +.+.++..++.-.+
T Consensus       239 pg~aa~~gflfi~alg~vg~~~~dg~i~wdi~~mi~~fg~sl~~~q~lsg~~~~~---~~qq----~t~nkitpv~~sgm  311 (375)
T PRK02654        239 PGLAANSGFLFIKALGQVGFYDVDGAINWDILIMVLGFGVSLYLSQVLSGQGMPA---NPQQ----STANKITPVMFSGM  311 (375)
T ss_pred             cceecccCceehHhhcccCccCCCCceeHHHHHHHHHhhhhhhhhHhhhcCCCCC---ChhH----HHHHhhhhHHHhhh
Confidence            333 24556666555432    122   112356667788889999888653322   1121    22333333322122


Q ss_pred             HHhhcccchhhhHHhhhhhHHHHHHHHHhcCH
Q 008435          292 FFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP  323 (565)
Q Consensus       292 ~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~  323 (565)
                       |+.+-+|+|+.+||+.+|+|+.+|++++.+.
T Consensus       312 -flffplpagvllym~ianifq~~qt~~l~re  342 (375)
T PRK02654        312 -FLFFPLPAGVLLYMVIANIFQTLQTFLLSRE  342 (375)
T ss_pred             -HhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence             3346899999999999999999999999753

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.65  E-value=7.3e-16  Score=163.95  Aligned_cols=142  Identities=18%  Similarity=0.103  Sum_probs=72.4

Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008435          358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG  437 (565)
Q Consensus       358 ~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~  437 (565)
                      |.|.+...+..++.+..+|..+.++|+.|-||+.|++||+++|++++|+.+||..+...|+.+||+++|.+|+.+     
T Consensus       275 Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-----  349 (966)
T KOG4626|consen  275 YLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-----  349 (966)
T ss_pred             HHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-----
Confidence            344444455555555555555555555555555555555555555555555555555555555555555555332     


Q ss_pred             CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHH
Q 008435          438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLI  508 (565)
Q Consensus       438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~A  508 (565)
                      .|+.+       .+.++||+++.++|..++|...|++ +...+|+.+...       .+||..+         +.+|+.+
T Consensus       350 ~p~ha-------dam~NLgni~~E~~~~e~A~~ly~~-al~v~p~~aaa~-------nNLa~i~kqqgnl~~Ai~~Ykea  414 (966)
T KOG4626|consen  350 CPNHA-------DAMNNLGNIYREQGKIEEATRLYLK-ALEVFPEFAAAH-------NNLASIYKQQGNLDDAIMCYKEA  414 (966)
T ss_pred             CCccH-------HHHHHHHHHHHHhccchHHHHHHHH-HHhhChhhhhhh-------hhHHHHHHhcccHHHHHHHHHHH
Confidence            23322       2344455555555555555555555 333444443221       1344333         4555555


Q ss_pred             HhcCCCcHHHH
Q 008435          509 FATSPSIINLL  519 (565)
Q Consensus       509 l~l~P~~~~~l  519 (565)
                      ++++|.+++++
T Consensus       415 lrI~P~fAda~  425 (966)
T KOG4626|consen  415 LRIKPTFADAL  425 (966)
T ss_pred             HhcCchHHHHH
Confidence            55555555444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.60  E-value=1.1e-14  Score=155.22  Aligned_cols=176  Identities=14%  Similarity=0.129  Sum_probs=146.7

Q ss_pred             chhhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 008435          356 PAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFL  435 (565)
Q Consensus       356 ~~~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l  435 (565)
                      ..|.|.++..|-.+++++.+|.++-..|+.+||+++|.+||.+.|+++++.++||.+|.+.|++++|...|++|++.   
T Consensus       307 ~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v---  383 (966)
T KOG4626|consen  307 DTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV---  383 (966)
T ss_pred             HHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---
Confidence            38899999999999999999999999999999999999999999999999999999999999999999999999764   


Q ss_pred             cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHH
Q 008435          436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITF  506 (565)
Q Consensus       436 ~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~  506 (565)
                        .|+       +..++.+||.+|.++|++++|+.+|+. +.+..|..++.       +.++|..+         +++|.
T Consensus       384 --~p~-------~aaa~nNLa~i~kqqgnl~~Ai~~Yke-alrI~P~fAda-------~~NmGnt~ke~g~v~~A~q~y~  446 (966)
T KOG4626|consen  384 --FPE-------FAAAHNNLASIYKQQGNLDDAIMCYKE-ALRIKPTFADA-------LSNMGNTYKEMGDVSAAIQCYT  446 (966)
T ss_pred             --Chh-------hhhhhhhHHHHHHhcccHHHHHHHHHH-HHhcCchHHHH-------HHhcchHHHHhhhHHHHHHHHH
Confidence              232       335788899999999999999999999 77888887654       34555555         89999


Q ss_pred             HHHhcCCCcHHHHHhhhhh-------hHHHhhhhhhh--hhhhhhhhccchhHH
Q 008435          507 LIFATSPSIINLLTVSNII-------DIIYVNCYELK--KKRFASCFFGFSVLY  551 (565)
Q Consensus       507 ~Al~l~P~~~~~l~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~  551 (565)
                      +|+.+||.++++..+...+       .++.+.|.++.  |+-|++||-||-...
T Consensus       447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL  500 (966)
T ss_pred             HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence            9999999999877555332       23444444432  355999999986654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=4.6e-14  Score=152.39  Aligned_cols=185  Identities=19%  Similarity=0.141  Sum_probs=149.9

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      ..-+..++.+|+.+|..|..+.-+++++.|+++|++|+++||+++.||..+|--+....++|.|..+|++|+..     +
T Consensus       411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-----~  485 (638)
T KOG1126|consen  411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-----D  485 (638)
T ss_pred             HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-----C
Confidence            45677788899999999999999999999999999999999999999999999999999999999999999654     3


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII  516 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~  516 (565)
                      |++       ..|||++|.+|.++|+++.|.-+|++ |...||.+-....++...+..++...  ++.+++|+.+||...
T Consensus       486 ~rh-------YnAwYGlG~vy~Kqek~e~Ae~~fqk-A~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~  557 (638)
T KOG1126|consen  486 PRH-------YNAWYGLGTVYLKQEKLEFAEFHFQK-AVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP  557 (638)
T ss_pred             chh-------hHHHHhhhhheeccchhhHHHHHHHh-hhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence            433       36899999999999999999999999 77799998866554433333333333  899999999999743


Q ss_pred             -------HHHHhhhhhhHHHhhhhh---hhhhhhhhhhccchhHHHHHHHH
Q 008435          517 -------NLLTVSNIIDIIYVNCYE---LKKKRFASCFFGFSVLYVMLVAM  557 (565)
Q Consensus       517 -------~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  557 (565)
                             ..+...+++++++....+   ..++ =+.+|+.+|.+|..++..
T Consensus       558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~  607 (638)
T KOG1126|consen  558 LCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNT  607 (638)
T ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccc
Confidence                   344555566555544433   3334 578899999999998753

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.45  E-value=1.5e-12  Score=134.29  Aligned_cols=173  Identities=17%  Similarity=0.116  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +..++.+|..+...|++++|+..|+++++++|+++.+|+.+|.++...|++++|++.|++++++     +|++.      
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~------  132 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN------  132 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH------
Confidence            5569999999999999999999999999999999999999999999999999999999999764     56543      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH------HHHHHHHHhc-CCCcHH----
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------ANITFLIFAT-SPSIIN----  517 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------~~~l~~Al~l-~P~~~~----  517 (565)
                       .++.++|.++...|++++|++.+++ +...+|+++....+.     .+....      .+.+++++.. +|+...    
T Consensus       133 -~a~~~lg~~l~~~g~~~eA~~~~~~-al~~~P~~~~~~~~~-----~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~  205 (296)
T PRK11189        133 -YAYLNRGIALYYGGRYELAQDDLLA-FYQDDPNDPYRALWL-----YLAESKLDPKQAKENLKQRYEKLDKEQWGWNIV  205 (296)
T ss_pred             -HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHH-----HHHHccCCHHHHHHHHHHHHhhCCccccHHHHH
Confidence             4688899999999999999999999 667899987321111     111111      5666555544 443211    


Q ss_pred             --HHHhhhhhhHHHhhhhh------hhhhhhhhhhccchhHHHHHHHHHhh
Q 008435          518 --LLTVSNIIDIIYVNCYE------LKKKRFASCFFGFSVLYVMLVAMLKL  560 (565)
Q Consensus       518 --~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (565)
                        .+.+.... +.++...+      ....|+.++|+++|.+|.++|+..+-
T Consensus       206 ~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A  255 (296)
T PRK11189        206 EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA  255 (296)
T ss_pred             HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence              11111111 12221111      22356899999999999998876553

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.44  E-value=1.8e-12  Score=119.45  Aligned_cols=107  Identities=13%  Similarity=0.075  Sum_probs=96.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +|+.++..|..+.+.|++++|+..|++++..+|++.++|+.+|.++...|++++|+++|++|++     .+|+++     
T Consensus        23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-----l~p~~~-----   92 (144)
T PRK15359         23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM-----LDASHP-----   92 (144)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCCc-----
Confidence            3555778899999999999999999999999999999999999999999999999999999965     457655     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhh
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK  487 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~  487 (565)
                        .+++++|.++...|++++|++.|++ +...+|+++...
T Consensus        93 --~a~~~lg~~l~~~g~~~eAi~~~~~-Al~~~p~~~~~~  129 (144)
T PRK15359         93 --EPVYQTGVCLKMMGEPGLAREAFQT-AIKMSYADASWS  129 (144)
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHH
Confidence              4688899999999999999999999 777999998653

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.41  E-value=5.3e-12  Score=121.60  Aligned_cols=138  Identities=20%  Similarity=0.166  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +...+++|..+++.|++..|...+++||+.||++..+|..++.+|...|+.+.|.+.|++|++     .+|++.      
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-----l~p~~G------  103 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS-----LAPNNG------  103 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh-----cCCCcc------
Confidence            567889999999999999999999999999999999999999999999999999999999965     457654      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL  519 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l  519 (565)
                       .++.+.|.-+|.+|++++|...|++ +. .+|..+...    +.+.++|-+-         .++|+++++.+|++....
T Consensus       104 -dVLNNYG~FLC~qg~~~eA~q~F~~-Al-~~P~Y~~~s----~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         104 -DVLNNYGAFLCAQGRPEEAMQQFER-AL-ADPAYGEPS----DTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             -chhhhhhHHHHhCCChHHHHHHHHH-HH-hCCCCCCcc----hhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence             3567799999999999999999999 44 466666432    2333444433         799999999999988766


Q ss_pred             Hhhhh
Q 008435          520 TVSNI  524 (565)
Q Consensus       520 ~~~~~  524 (565)
                      .+..+
T Consensus       177 l~~a~  181 (250)
T COG3063         177 LELAR  181 (250)
T ss_pred             HHHHH
Confidence            55433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.39  E-value=6e-12  Score=142.55  Aligned_cols=179  Identities=13%  Similarity=0.062  Sum_probs=121.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +.++..++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+.+|++++++     +|++.   
T Consensus       362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~---  433 (615)
T TIGR00990       362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFI---  433 (615)
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCH---
Confidence            4456678888888888888888888888888888888888888888888888888888888888653     45433   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHH----
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLL----  519 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l----  519 (565)
                          .++..+|.++..+|++++|+..|++ +...+|+++.....+...+...+...  ++.|+++++++|+.....    
T Consensus       434 ----~~~~~la~~~~~~g~~~eA~~~~~~-al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~  508 (615)
T TIGR00990       434 ----FSHIQLGVTQYKEGSIASSMATFRR-CKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL  508 (615)
T ss_pred             ----HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHH
Confidence                3566788888888888888888888 55677877765443333333333222  778888888887642211    


Q ss_pred             ----------HhhhhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHH
Q 008435          520 ----------TVSNIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAM  557 (565)
Q Consensus       520 ----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  557 (565)
                                ...++.+++.+.+.++  ...+...++.++|.+|...|+.
T Consensus       509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~  558 (615)
T TIGR00990       509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV  558 (615)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence                      1112222232222221  1245666788888888876653

>PRK12370 invasion protein regulator; Provisional

Probab=99.36  E-value=6.8e-12  Score=140.31  Aligned_cols=186  Identities=13%  Similarity=0.041  Sum_probs=136.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHC---CCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 008435          362 ISVENLTPKELIALSVKFLSK---GDKERPIPLLQLALNKEPDNINALILMGQTQLQK---------GLLEEAVEYLECA  429 (565)
Q Consensus       362 ~~~~~~~~~~l~~lA~~l~~~---g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~---------g~~~eA~~~~~rA  429 (565)
                      ..+.+.++.+++..|..+...   +++++|+.+|++|+++||+++.+|..+|.+|...         +++++|++++++|
T Consensus       251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A  330 (553)
T PRK12370        251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA  330 (553)
T ss_pred             CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            345677888899999876544   4567999999999999999999999999987744         3489999999999


Q ss_pred             HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHH
Q 008435          430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFL  507 (565)
Q Consensus       430 l~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~  507 (565)
                      +++     +|+++       .++..+|.++...|++++|+++|++ +..++|+++.....+...+...|...  ++++++
T Consensus       331 l~l-----dP~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~-Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        331 TEL-----DHNNP-------QALGLLGLINTIHSEYIVGSLLFKQ-ANLLSPISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             Hhc-----CCCCH-------HHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            654     57655       4677799999999999999999999 77799999865433222222222222  899999


Q ss_pred             HHhcCCCcHHHH-------HhhhhhhHHHhhhhhhh---hhhhhhhhccchhHHHHHHHHHhh
Q 008435          508 IFATSPSIINLL-------TVSNIIDIIYVNCYELK---KKRFASCFFGFSVLYVMLVAMLKL  560 (565)
Q Consensus       508 Al~l~P~~~~~l-------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  560 (565)
                      +++++|......       -..++.+++.+.+.++.   ...++.++.++|.+|..+|+..+-
T Consensus       398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA  460 (553)
T PRK12370        398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA  460 (553)
T ss_pred             HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence            999999864321       11233334444443333   345788899999999888875443

>PRK12370 invasion protein regulator; Provisional

Probab=99.23  E-value=2.3e-10  Score=128.08  Aligned_cols=146  Identities=14%  Similarity=0.044  Sum_probs=110.0

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+.+..++.+++.+..+|..+...|++++|+..|++|++++|+++.+|+.+|.++...|++++|+++|++++++     +
T Consensus       328 ~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~  402 (553)
T PRK12370        328 IKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL-----D  402 (553)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C
Confidence            44566667789999999999999999999999999999999999999999999999999999999999999654     5


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII  516 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~  516 (565)
                      |.++       .++..++.++...|++++|++.++++....+|+++.........+..+|..-  .+.+++....+|+..
T Consensus       403 P~~~-------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~  475 (553)
T PRK12370        403 PTRA-------AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL  475 (553)
T ss_pred             CCCh-------hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence            6644       1233455567789999999999999444334677653221211111222211  667788777777743

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.20  E-value=2.2e-10  Score=105.68  Aligned_cols=100  Identities=12%  Similarity=0.003  Sum_probs=90.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +-+.+|..|..+++.|++++|++.|+-+...||.+++.|++||.++..+|++++|+++|.+|+.     ++|+++     
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-----L~~ddp-----  103 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-----IKIDAP-----  103 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCCc-----
Confidence            4678899999999999999999999999999999999999999999999999999999999965     457766     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKE  480 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~  480 (565)
                        .+++++|.|+...|+.++|++.|+. +....
T Consensus       104 --~~~~~ag~c~L~lG~~~~A~~aF~~-Ai~~~  133 (157)
T PRK15363        104 --QAPWAAAECYLACDNVCYAIKALKA-VVRIC  133 (157)
T ss_pred             --hHHHHHHHHHHHcCCHHHHHHHHHH-HHHHh
Confidence              4688899999999999999999999 44343

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.20  E-value=9.7e-10  Score=105.92  Aligned_cols=175  Identities=17%  Similarity=0.134  Sum_probs=122.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      .+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++.     +|.+.     
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~-----   99 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----NPNNG-----   99 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH-----
Confidence            36778899999999999999999999999999999999999999999999999999999999754     34432     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHH
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINL  518 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~  518 (565)
                        .++..+|.++...|++++|++.++++.. .. ..+...    ..+..+|..+         .++++++++.+|+....
T Consensus       100 --~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  171 (234)
T TIGR02521       100 --DVLNNYGTFLCQQGKYEQAMQQFEQAIE-DP-LYPQPA----RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPES  171 (234)
T ss_pred             --HHHHHHHHHHHHcccHHHHHHHHHHHHh-cc-ccccch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHH
Confidence              3567789999999999999999999433 22 111110    1122333333         78899999999986553


Q ss_pred             HHhh-------hhhhH---HHhhhhhhhhhhhhhhhccchhHHHHHHHHHhhh
Q 008435          519 LTVS-------NIIDI---IYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLR  561 (565)
Q Consensus       519 l~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (565)
                      +...       ++.++   .++.+.+. ..-..+.+..++.++...++..+.+
T Consensus       172 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~  223 (234)
T TIGR02521       172 LLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQ  223 (234)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence            3222       22222   22222222 1223455666677777766655543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.19  E-value=2.9e-10  Score=104.72  Aligned_cols=124  Identities=12%  Similarity=0.060  Sum_probs=97.7

Q ss_pred             CchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCH
Q 008435          386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW  465 (565)
Q Consensus       386 ~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~  465 (565)
                      .--..++++++++||++   ++.+|.++.+.|++++|+++|++++..     +|.+.       .++..+|.++...|++
T Consensus        10 ~~~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~-------~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         10 KIPEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSW-------RAHIALAGTWMMLKEY   74 (144)
T ss_pred             CCHHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcH-------HHHHHHHHHHHHHhhH
Confidence            34678999999999997   667899999999999999999999653     56544       5688899999999999


Q ss_pred             HHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435          466 EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNII  525 (565)
Q Consensus       466 ~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~  525 (565)
                      ++|+..|++ +..++|+++........++..+|..-  ++.++++++.+|++.+++...+..
T Consensus        75 ~~A~~~y~~-Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359         75 TTAINFYGH-ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA  135 (144)
T ss_pred             HHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            999999999 66799999876442222222222222  889999999999998887555444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.19  E-value=3.4e-10  Score=110.00  Aligned_cols=114  Identities=17%  Similarity=0.205  Sum_probs=97.9

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhhhh
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQ-LQKGL--LEEAVEYLECAISKLFL  435 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~-~~~g~--~~eA~~~~~rAl~l~~l  435 (565)
                      .+.+..++.+++.++.+|..+...|++++|+..|++|++++|++++++..+|.++ ...|+  .++|.+.+++++++   
T Consensus        63 ~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~---  139 (198)
T PRK10370         63 QDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL---  139 (198)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---
Confidence            5667777888999999999999999999999999999999999999999999975 67787  59999999999654   


Q ss_pred             cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       436 ~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                        +|++.       .+++.+|.++.+.|++++|+.+++++.....|++.
T Consensus       140 --dP~~~-------~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        140 --DANEV-------TALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             --CCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence              56654       46788999999999999999999995554444443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.18  E-value=9.5e-11  Score=127.05  Aligned_cols=148  Identities=18%  Similarity=0.189  Sum_probs=119.0

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .|.+..++..++.+..+|..+....++|+|.++|++||..||.+.+|||.+|.+|.++++++.|+-+|++|++     .|
T Consensus       445 ~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~-----IN  519 (638)
T KOG1126|consen  445 KRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE-----IN  519 (638)
T ss_pred             HHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc-----CC
Confidence            4567777778999999999999999999999999999999999999999999999999999999999999965     46


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII  516 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~  516 (565)
                      |.+.       .....+|.++.+.|+.|+|+..|++ |..++|.|+....+-...+..++...  .+.+++.-++-|+..
T Consensus       520 P~ns-------vi~~~~g~~~~~~k~~d~AL~~~~~-A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es  591 (638)
T KOG1126|consen  520 PSNS-------VILCHIGRIQHQLKRKDKALQLYEK-AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQES  591 (638)
T ss_pred             ccch-------hHHhhhhHHHHHhhhhhHHHHHHHH-HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH
Confidence            7654       2356689999999999999999999 66699999976554433333333322  556666666667654


Q ss_pred             HHH
Q 008435          517 NLL  519 (565)
Q Consensus       517 ~~l  519 (565)
                      -..
T Consensus       592 ~v~  594 (638)
T KOG1126|consen  592 SVF  594 (638)
T ss_pred             HHH
Confidence            433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.18  E-value=3.5e-10  Score=102.00  Aligned_cols=115  Identities=16%  Similarity=0.169  Sum_probs=100.4

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+.+...+.+.+..+.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++|+++++.     +
T Consensus         7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~   81 (135)
T TIGR02552         7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-----D   81 (135)
T ss_pred             HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----C
Confidence            44555666678889999999999999999999999999999999999999999999999999999999999653     4


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      |+++       ..++.+|.++...|++++|++.|++ +..++|++...
T Consensus        82 p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~  121 (135)
T TIGR02552        82 PDDP-------RPYFHAAECLLALGEPESALKALDL-AIEICGENPEY  121 (135)
T ss_pred             CCCh-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhccccchH
Confidence            5433       3577899999999999999999999 67788888753

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.17  E-value=4.5e-10  Score=127.34  Aligned_cols=141  Identities=11%  Similarity=0.008  Sum_probs=113.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +..+..+..+|..+...|++++|+..++++++++|++..+|+.+|.++...|++++|+++|+++++.     +|+++   
T Consensus       328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~---  399 (615)
T TIGR00990       328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDP---  399 (615)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---
Confidence            3456778899999999999999999999999999999999999999999999999999999999654     46544   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHH
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLL  519 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l  519 (565)
                          .+++.+|.++...|++++|+..|++ +..++|++..........+..++...  +..++++++.+|+...++
T Consensus       400 ----~~~~~lg~~~~~~g~~~~A~~~~~k-al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~  470 (615)
T TIGR00990       400 ----DIYYHRAQLHFIKGEFAQAGKDYQK-SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY  470 (615)
T ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence                4678899999999999999999999 67788887754221111111112111  789999999999876544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.13  E-value=8.8e-10  Score=109.17  Aligned_cols=177  Identities=14%  Similarity=0.071  Sum_probs=121.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a---~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      ....++.++.+|..+...|++++|+..+++++..+|+++   .+++.+|.++...|++++|++.|+++++.     +|++
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~  103 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-----HPNH  103 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCC
Confidence            345688999999999999999999999999999999986   68999999999999999999999999765     4654


Q ss_pred             hhhhhHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 008435          442 PEAIDLLIVASQWSGVACIRQ--------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSP  513 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~--------g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l~~~l~~Al~l~P  513 (565)
                      +..    ..+++.+|.++...        |++++|++.|++ +...+|++.....    ++..++... ..+.+   ..-
T Consensus       104 ~~~----~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~p~~~~~~~----a~~~~~~~~-~~~~~---~~~  170 (235)
T TIGR03302       104 PDA----DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQE-LIRRYPNSEYAPD----AKKRMDYLR-NRLAG---KEL  170 (235)
T ss_pred             Cch----HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH-HHHHCCCChhHHH----HHHHHHHHH-HHHHH---HHH
Confidence            421    23677899999876        899999999999 6667888764322    111111111 00000   000


Q ss_pred             CcHHHHHhhhhhhHHHhhhhhhhh-----hhhhhhhccchhHHHHHHHHHh
Q 008435          514 SIINLLTVSNIIDIIYVNCYELKK-----KRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       514 ~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                      ....++...++..+..+.+..+.+     +.++++++++|.+|.++++--+
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~  221 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDL  221 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence            112223333333333333333221     3467899999999998887443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.13  E-value=9.8e-10  Score=129.26  Aligned_cols=141  Identities=17%  Similarity=0.110  Sum_probs=106.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +......++......|++++|+..++++++.+|+ +.++..+|.++.+.|++++|+++|++++++     +|+++     
T Consensus       575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~-----  643 (987)
T PRK09782        575 DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNS-----  643 (987)
T ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-----
Confidence            3444445555556679999999999999999996 899999999999999999999999999654     56654     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhh
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVS  522 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~  522 (565)
                        .++.++|.++...|++++|++.|++ +..++|+++........++..+|..-  +++++++++++|+........
T Consensus       644 --~a~~nLG~aL~~~G~~eeAi~~l~~-AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~  717 (987)
T PRK09782        644 --NYQAALGYALWDSGDIAQSREMLER-AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLT  717 (987)
T ss_pred             --HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhh
Confidence              4677899999999999999999999 66789998865332222222222211  789999999999876655443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.13  E-value=1.3e-09  Score=123.76  Aligned_cols=134  Identities=13%  Similarity=0.061  Sum_probs=110.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +++.++.+|....+.|++++|+.+++++++.+|++..|+..++.++.+.++++||+..++++++     .+|+++     
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~-----~~p~~~-----  154 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS-----GGSSSA-----  154 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh-----cCCCCH-----
Confidence            5889999999999999999999999999999999999999999999999999999999999954     467655     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPS  514 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~  514 (565)
                        .+++.+|.++.++|+++||++.|++ +...+|+++.....+...+...|..-  ...|+++++..-+
T Consensus       155 --~~~~~~a~~l~~~g~~~~A~~~y~~-~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        155 --REILLEAKSWDEIGQSEQADACFER-LSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             --HHHHHHHHHHHHhcchHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence              4677899999999999999999999 44478887765443322222223222  7888999887643

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.13  E-value=8.3e-10  Score=118.21  Aligned_cols=173  Identities=13%  Similarity=0.115  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHH
Q 008435          372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA  451 (565)
Q Consensus       372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a  451 (565)
                      -+..|..++++|+..+|.-+|+.|+..||++++||-.||.++...++-..|+.+++|+++     ++|++-       .+
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~-----LdP~Nl-------ea  355 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE-----LDPTNL-------EA  355 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh-----cCCccH-------HH
Confidence            468999999999999999999999999999999999999999999999999999999965     467755       46


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-----------C---------ch----hhhhh------------hhHHH
Q 008435          452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPE-----------E---------PK----SKAHY------------YDGLV  495 (565)
Q Consensus       452 ~~~lG~a~~~~g~~~eAi~~leraa~~l~P~-----------~---------~~----~~~~~------------~~~~~  495 (565)
                      ...|+++|...|.-.+|.+.|++ -.+..|.           .         ..    ....|            .+...
T Consensus       356 LmaLAVSytNeg~q~~Al~~L~~-Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~  434 (579)
T KOG1125|consen  356 LMALAVSYTNEGLQNQALKMLDK-WIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQS  434 (579)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHH-HHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHh
Confidence            67789999999988889888888 3222211           1         00    00011            11222


Q ss_pred             HHHHHH---------HHHHHHHHhcCCCcHHHHHhh-------hhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHH
Q 008435          496 VLARYV---------ANITFLIFATSPSIINLLTVS-------NIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAM  557 (565)
Q Consensus       496 ~La~~l---------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  557 (565)
                      .||-.+         ++||+.||..+|+....|.+.       ++..+++..|-++  .++-|.++.||+|+.|.-+|+-
T Consensus       435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y  514 (579)
T KOG1125|consen  435 GLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY  514 (579)
T ss_pred             hhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence            333333         899999999999988877554       3333555544332  2355999999999999888764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.12  E-value=7.3e-10  Score=126.39  Aligned_cols=141  Identities=13%  Similarity=0.119  Sum_probs=110.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCc----hHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          363 SVENLTPKELIALSVKFLSKGDKER----PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       363 ~~~~~~~~~l~~lA~~l~~~g~~~e----Ai~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      ...+.++..++.+|..+...|++++    |+..|+++++.+|+++.++..+|.++...|++++|+.++++++++     +
T Consensus       240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~  314 (656)
T PRK15174        240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----H  314 (656)
T ss_pred             hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C
Confidence            3345568888999999999999996    899999999999999999999999999999999999999999654     4


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII  516 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~  516 (565)
                      |+++       .++.++|.++...|++++|++.|++ +...+|+++.........+...|..-  ++.|+++++.+|+..
T Consensus       315 P~~~-------~a~~~La~~l~~~G~~~eA~~~l~~-al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        315 PDLP-------YVRAMYARALRQVGQYTAASDEFVQ-LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            6544       3567799999999999999999999 66678877642211111111222212  789999999999853

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.11  E-value=6.8e-10  Score=117.50  Aligned_cols=106  Identities=24%  Similarity=0.324  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      .++...|..++..|++++|+.+|++|++++|+++.+|+.+|.++...|++++|+..+++|+++     +|.++       
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~P~~~-------   70 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL-----DPSLA-------   70 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCH-------
Confidence            357889999999999999999999999999999999999999999999999999999999764     46543       


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                      .+++.+|.++..+|++++|+.+|++ +..++|+++....
T Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~-al~l~P~~~~~~~  108 (356)
T PLN03088         71 KAYLRKGTACMKLEEYQTAKAALEK-GASLAPGDSRFTK  108 (356)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHH-HHHhCCCCHHHHH
Confidence            4688899999999999999999999 6779999986533

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.10  E-value=3e-09  Score=102.51  Aligned_cols=141  Identities=19%  Similarity=0.200  Sum_probs=107.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      ++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.|+++++..   ..+.       
T Consensus        64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~-------  133 (234)
T TIGR02521        64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP---LYPQ-------  133 (234)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---cccc-------
Confidence            467788899999999999999999999999999999999999999999999999999999997531   0111       


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHH
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLL  519 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l  519 (565)
                      ....+..+|.++...|++++|++.+++ +...+|+++.....+...+...+...  .++++++++..|.....+
T Consensus       134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  206 (234)
T TIGR02521       134 PARSLENAGLCALKAGDFDKAEKYLTR-ALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL  206 (234)
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            123467799999999999999999999 66678877644322111111111111  678888888877655443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.09  E-value=8.4e-10  Score=110.38  Aligned_cols=107  Identities=21%  Similarity=0.231  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ++.+-.+|..+.+.++|++|+..|.+||++||+|+--|-+.+.+|.++|++++|++-.+.||++     ||       ..
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-----Dp-------~y  148 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-----DP-------HY  148 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----Ch-------HH
Confidence            5777889999999999999999999999999999999999999999999999999999999764     23       33


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                      ..+|..+|.+|..+|++++|++.|++ ++.++|++...+.
T Consensus       149 skay~RLG~A~~~~gk~~~A~~aykK-aLeldP~Ne~~K~  187 (304)
T KOG0553|consen  149 SKAYGRLGLAYLALGKYEEAIEAYKK-ALELDPDNESYKS  187 (304)
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHh-hhccCCCcHHHHH
Confidence            46889999999999999999999999 7779999985444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.08  E-value=3.3e-09  Score=102.51  Aligned_cols=113  Identities=18%  Similarity=0.202  Sum_probs=98.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       363 ~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      ..++-+...+..+|..+...|+.+.|.+.|++|++++|++.+++++.|..+..+|++++|..+|++|++      +|..+
T Consensus        63 ~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~  136 (250)
T COG3063          63 EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYG  136 (250)
T ss_pred             HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCC
Confidence            334446778889999999999999999999999999999999999999999999999999999999964      46544


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      +..    .++.++|.|..+.|+.+.|.++|+| +...+|+++..
T Consensus       137 ~~s----~t~eN~G~Cal~~gq~~~A~~~l~r-aL~~dp~~~~~  175 (250)
T COG3063         137 EPS----DTLENLGLCALKAGQFDQAEEYLKR-ALELDPQFPPA  175 (250)
T ss_pred             Ccc----hhhhhhHHHHhhcCCchhHHHHHHH-HHHhCcCCChH
Confidence            322    3567899999999999999999999 77799998864

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.08  E-value=1.8e-09  Score=123.10  Aligned_cols=108  Identities=9%  Similarity=0.015  Sum_probs=70.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ..+.+++.++.+|......|++++|+..++++++.+|++++++..+|.++.+.|++++|++.|++++++     +|+++ 
T Consensus        71 ~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-----~P~~~-  144 (656)
T PRK15174         71 TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-----FSGNS-  144 (656)
T ss_pred             hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH-
Confidence            334456667777777777777777777777777777777777777777777777777777777777543     34432 


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                            .++..+|.++...|++++|++.+++ +...+|+++
T Consensus       145 ------~a~~~la~~l~~~g~~~eA~~~~~~-~~~~~P~~~  178 (656)
T PRK15174        145 ------QIFALHLRTLVLMDKELQAISLART-QAQEVPPRG  178 (656)
T ss_pred             ------HHHHHHHHHHHHCCChHHHHHHHHH-HHHhCCCCH
Confidence                  2344556666666666666666665 333455544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1e-09  Score=114.62  Aligned_cols=104  Identities=14%  Similarity=0.154  Sum_probs=59.0

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      +|.+...+.....+...|..+.+.++...|+..|++|++++|.|-+||+.||+.|.-.+.+.=|+-+|+||+++     .
T Consensus       354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----k  428 (559)
T KOG1155|consen  354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----K  428 (559)
T ss_pred             HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----C
Confidence            34444444444455555555666666666666666666666666666666666666666666666666666432     2


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      |.|.       ..|..+|.||.++++.+||++.|++
T Consensus       429 PnDs-------Rlw~aLG~CY~kl~~~~eAiKCykr  457 (559)
T KOG1155|consen  429 PNDS-------RLWVALGECYEKLNRLEEAIKCYKR  457 (559)
T ss_pred             CCch-------HHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4433       2344566666666666666666666

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.07  E-value=1.6e-09  Score=105.19  Aligned_cols=122  Identities=11%  Similarity=0.086  Sum_probs=95.2

Q ss_pred             CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH-H
Q 008435          382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC-I  460 (565)
Q Consensus       382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~-~  460 (565)
                      .++.++++..++++++.+|+|+++|+.+|.+|...|++++|+++|++|+++     +|+++       .++..+|.++ .
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~-------~~~~~lA~aL~~  119 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENA-------ELYAALATVLYY  119 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHH
Confidence            555678899999999999999999999999999999999999999999664     56654       3567788875 6


Q ss_pred             HcCC--HHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435          461 RQEK--WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII  516 (565)
Q Consensus       461 ~~g~--~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~  516 (565)
                      ..|+  +++|++.+++ +...+|+++.............|..-  +++++++++.+|...
T Consensus       120 ~~g~~~~~~A~~~l~~-al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        120 QAGQHMTPQTREMIDK-ALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             hcCCCCcHHHHHHHHH-HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            7787  5999999999 77799999865432211111122222  899999999998643

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.05  E-value=2.1e-09  Score=130.18  Aligned_cols=132  Identities=20%  Similarity=0.201  Sum_probs=95.8

Q ss_pred             HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh---HHH-
Q 008435          374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID---LLI-  449 (565)
Q Consensus       374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~---~~~-  449 (565)
                      .+|..+...|++++|+..|+++++.+|+++++++.+|.++.+.|++++|+++|+++++.     +|++.....   ... 
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-----~p~~~~~~~~~~ll~~  348 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL-----DPHSSNRDKWESLLKV  348 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCccchhHHHHHHHh
Confidence            55888999999999999999999999999999999999999999999999999999754     454321100   000 


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHH
Q 008435          450 ---VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIIN  517 (565)
Q Consensus       450 ---~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~  517 (565)
                         ......|.++...|++++|++.|++ +...+|+++....       .+|..+         +++|+++++.+|+...
T Consensus       349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~-Al~~~P~~~~a~~-------~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~  420 (1157)
T PRK11447        349 NRYWLLIQQGDAALKANNLAQAERLYQQ-ARQVDNTDSYAVL-------GLGDVAMARKDYAAAERYYQQALRMDPGNTN  420 (1157)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHH-------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence               0122346677777777777777777 5556776654322       333333         6777777777777554


Q ss_pred             H
Q 008435          518 L  518 (565)
Q Consensus       518 ~  518 (565)
                      +
T Consensus       421 a  421 (1157)
T PRK11447        421 A  421 (1157)
T ss_pred             H
Confidence            3

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.05  E-value=7.4e-09  Score=106.87  Aligned_cols=109  Identities=13%  Similarity=0.124  Sum_probs=87.4

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+.+...+.+++.++.+|..+...|++++|+..|+++++++|++..+|..+|.++...|++++|++.|++++++     +
T Consensus        88 ~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~  162 (296)
T PRK11189         88 SQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----D  162 (296)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C
Confidence            34444556678999999999999999999999999999999999999999999999999999999999999654     5


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE  480 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~  480 (565)
                      |+++.       ...|+ ..+...+++++|++.|++.+...+
T Consensus       163 P~~~~-------~~~~~-~l~~~~~~~~~A~~~l~~~~~~~~  196 (296)
T PRK11189        163 PNDPY-------RALWL-YLAESKLDPKQAKENLKQRYEKLD  196 (296)
T ss_pred             CCCHH-------HHHHH-HHHHccCCHHHHHHHHHHHHhhCC
Confidence            65541       11122 234567889999999987454333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.03  E-value=5.4e-09  Score=111.04  Aligned_cols=110  Identities=13%  Similarity=0.145  Sum_probs=82.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +......|..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.++++++.      |...  .
T Consensus        32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~~~~--~  103 (389)
T PRK11788         32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR------PDLT--R  103 (389)
T ss_pred             hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC------CCCC--H
Confidence            3345667788888999999999999999999999999999999999999999999999999988542      2111  1


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      .....++..+|.++...|++++|++.|++ +...+|.+.
T Consensus       104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~-~l~~~~~~~  141 (389)
T PRK11788        104 EQRLLALQELGQDYLKAGLLDRAEELFLQ-LVDEGDFAE  141 (389)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHcCCcchH
Confidence            11123466677777888888888888877 444455443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.01  E-value=4.7e-09  Score=123.61  Aligned_cols=142  Identities=13%  Similarity=0.058  Sum_probs=116.8

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+.+...+ +++.++.+|..+.+.|++++|+..|+++++++|+++.++..+|.++...|++++|+++|++|+++     +
T Consensus       600 ~~AL~l~P-~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~  673 (987)
T PRK09782        600 TRSLNIAP-SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-----L  673 (987)
T ss_pred             HHHHHhCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C
Confidence            33444445 48889999999999999999999999999999999999999999999999999999999999664     5


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH----HHHHHHHHhcCCC
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV----ANITFLIFATSPS  514 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l----~~~l~~Al~l~P~  514 (565)
                      |+++       .+++++|.++...|++++|+++|++ +..++|+++.....+  +.+......    .+.++++..++|+
T Consensus       674 P~~~-------~a~~nLA~al~~lGd~~eA~~~l~~-Al~l~P~~a~i~~~~--g~~~~~~~~~~~a~~~~~r~~~~~~~  743 (987)
T PRK09782        674 PDDP-------ALIRQLAYVNQRLDDMAATQHYARL-VIDDIDNQALITPLT--PEQNQQRFNFRRLHEEVGRRWTFSFD  743 (987)
T ss_pred             CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCCchhhhhh--hHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            6654       4688899999999999999999999 777899988664322  222222222    6778888999997


Q ss_pred             cH
Q 008435          515 II  516 (565)
Q Consensus       515 ~~  516 (565)
                      ..
T Consensus       744 ~~  745 (987)
T PRK09782        744 SS  745 (987)
T ss_pred             ch
Confidence            55

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.01  E-value=7.7e-09  Score=119.68  Aligned_cols=177  Identities=18%  Similarity=0.200  Sum_probs=126.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh-----
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP-----  442 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~-----  442 (565)
                      ++..++..|..+..+|++++|+..++++++.+|+++++++.+|.++...|++++|+..|+++++..     |.+.     
T Consensus        21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~   95 (899)
T TIGR02917        21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLG-----YPKNQVLPL   95 (899)
T ss_pred             CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CChhhhHHH
Confidence            567789999999999999999999999999999999999999999999999999999999997542     2110     


Q ss_pred             -----------------------hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH
Q 008435          443 -----------------------EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR  499 (565)
Q Consensus       443 -----------------------~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~  499 (565)
                                             ...+....++..+|.++...|++++|++.|++ +...+|+++....       .++.
T Consensus        96 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~-------~la~  167 (899)
T TIGR02917        96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQ-ALAIDPRSLYAKL-------GLAQ  167 (899)
T ss_pred             HHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCChhhHH-------HHHH
Confidence                                   01112234567799999999999999999999 6667887764322       3333


Q ss_pred             HH---------HHHHHHHHhcCCCcHHHHHhh-------hhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHH
Q 008435          500 YV---------ANITFLIFATSPSIINLLTVS-------NIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAM  557 (565)
Q Consensus       500 ~l---------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  557 (565)
                      .+         .+.++++++.+|+...++...       ++.+++.+.+..+  ...+..+++..++.++...++.
T Consensus       168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~  243 (899)
T TIGR02917       168 LALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEF  243 (899)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence            32         788888889999876544222       2222222222221  1234566777777777766543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.01  E-value=9.4e-10  Score=117.80  Aligned_cols=107  Identities=19%  Similarity=0.260  Sum_probs=94.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       363 ~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      .+.-.|++..+.+|+.+...|++++|+++|+.||+.+|+|...|..||-.+..-.+.+||+.+|+||+++     .|...
T Consensus       424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-----qP~yV  498 (579)
T KOG1125|consen  424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL-----QPGYV  498 (579)
T ss_pred             CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-----CCCee
Confidence            3334689999999999999999999999999999999999999999999999999999999999999654     46533


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                             +++|++|++|+.+|.|.||+++|-. ++.+.+.
T Consensus       499 -------R~RyNlgIS~mNlG~ykEA~~hlL~-AL~mq~k  530 (579)
T KOG1125|consen  499 -------RVRYNLGISCMNLGAYKEAVKHLLE-ALSMQRK  530 (579)
T ss_pred             -------eeehhhhhhhhhhhhHHHHHHHHHH-HHHhhhc
Confidence                   6889999999999999999999999 4444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.01  E-value=4.6e-09  Score=94.60  Aligned_cols=123  Identities=14%  Similarity=0.171  Sum_probs=95.2

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHH
Q 008435          390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI  469 (565)
Q Consensus       390 ~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi  469 (565)
                      +.++++++.+|++..+.+.+|..+...|++++|++.|+++++.     +|.++       .++..+|.++..+|++++|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~-------~~~~~la~~~~~~~~~~~A~   71 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNS-------RYWLGLAACCQMLKEYEEAI   71 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcH-------HHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999654     45433       46788999999999999999


Q ss_pred             HHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435          470 AHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNII  525 (565)
Q Consensus       470 ~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~  525 (565)
                      +.+++ +...+|.++.........+...+..-  .++++++++++|+...+..-..+.
T Consensus        72 ~~~~~-~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  128 (135)
T TIGR02552        72 DAYAL-AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA  128 (135)
T ss_pred             HHHHH-HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            99999 66678888765332222221122111  789999999999887755444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=5.7e-09  Score=109.78  Aligned_cols=111  Identities=16%  Similarity=0.185  Sum_probs=76.1

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      ....+.++.+++.++.+|...+-.+++++|+.-|++++++||+++.++..++.+.+++++++++...|+.++++     .
T Consensus       384 ~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-----F  458 (606)
T KOG0547|consen  384 NKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-----F  458 (606)
T ss_pred             HHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----C
Confidence            33444445566777777777777777777777777777777777777777777777777777777777777554     2


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                      |+-+       +.+...|.++..++++++|++.|++ +.+++|.
T Consensus       459 P~~~-------Evy~~fAeiLtDqqqFd~A~k~YD~-ai~LE~~  494 (606)
T KOG0547|consen  459 PNCP-------EVYNLFAEILTDQQQFDKAVKQYDK-AIELEPR  494 (606)
T ss_pred             CCCc-------hHHHHHHHHHhhHHhHHHHHHHHHH-HHhhccc
Confidence            4333       2344467777777777777777777 5667666

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.98  E-value=7.8e-09  Score=125.27  Aligned_cols=182  Identities=16%  Similarity=0.163  Sum_probs=128.5

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHH--------------HHHHHHHHHHcCCHHHHHH
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA--------------LILMGQTQLQKGLLEEAVE  424 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A--------------~~~LG~~~~~~g~~~eA~~  424 (565)
                      .+.+...+.+++.++.+|..+.+.|++++|+.+|+++++.+|++...              ...+|.++...|++++|++
T Consensus       293 ~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~  372 (1157)
T PRK11447        293 QQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER  372 (1157)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            33444456678999999999999999999999999999999987532              2355888999999999999


Q ss_pred             HHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhH-----------
Q 008435          425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG-----------  493 (565)
Q Consensus       425 ~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~-----------  493 (565)
                      +|++++++     +|+++       .++..+|.++..+|++++|+++|++ +...+|+++.........           
T Consensus       373 ~~~~Al~~-----~P~~~-------~a~~~Lg~~~~~~g~~~eA~~~y~~-aL~~~p~~~~a~~~L~~l~~~~~~~~A~~  439 (1157)
T PRK11447        373 LYQQARQV-----DNTDS-------YAVLGLGDVAMARKDYAAAERYYQQ-ALRMDPGNTNAVRGLANLYRQQSPEKALA  439 (1157)
T ss_pred             HHHHHHHh-----CCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence            99999764     46543       4677899999999999999999999 666888887543211111           


Q ss_pred             ------------------------HHHHHHHH---------HHHHHHHHhcCCCcHHHH-------HhhhhhhHHHhhhh
Q 008435          494 ------------------------LVVLARYV---------ANITFLIFATSPSIINLL-------TVSNIIDIIYVNCY  533 (565)
Q Consensus       494 ------------------------~~~La~~l---------~~~l~~Al~l~P~~~~~l-------~~~~~~~~~~~~~~  533 (565)
                                              +..++..+         +++++++++++|+...++       .+.++.+++...+.
T Consensus       440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~  519 (1157)
T PRK11447        440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR  519 (1157)
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                    11122222         788999999999865533       22333333333333


Q ss_pred             hhh--hhhhhhhhccchhHHHH
Q 008435          534 ELK--KKRFASCFFGFSVLYVM  553 (565)
Q Consensus       534 ~~~--~~~~~~~~~~~~~~~~~  553 (565)
                      ++.  .+..+++++.+|..+..
T Consensus       520 ~al~~~P~~~~~~~a~al~l~~  541 (1157)
T PRK11447        520 RLAQQKPNDPEQVYAYGLYLSG  541 (1157)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHh
Confidence            222  24467777777766543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.95  E-value=5.9e-09  Score=90.99  Aligned_cols=107  Identities=21%  Similarity=0.210  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      ++.++..|..+.+.|++++|+..|+++++.+|++   ..+++.+|.++...|++++|+++|+++++.     +|++.   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---   73 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKSP---   73 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCCC---
Confidence            5678999999999999999999999999999987   679999999999999999999999999654     34322   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                       ....+++.+|.++...|++++|+.++++ +....|+++.
T Consensus        74 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~p~~~~  111 (119)
T TIGR02795        74 -KAPDALLKLGMSLQELGDKEKAKATLQQ-VIKRYPGSSA  111 (119)
T ss_pred             -cccHHHHHHHHHHHHhCChHHHHHHHHH-HHHHCcCChh
Confidence             1124577899999999999999999999 6667787764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.7e-08  Score=105.76  Aligned_cols=133  Identities=14%  Similarity=0.120  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +|..|-.|.=+..+++.++|+.+|++||++||+...||..+|--|....+-..|++.|++|+++     +|.|.      
T Consensus       330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-----~p~Dy------  398 (559)
T KOG1155|consen  330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-----NPRDY------  398 (559)
T ss_pred             ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-----CchhH------
Confidence            4445556655556666666666666666666666666666666666666666666666666543     23322      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPS  514 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~  514 (565)
                       +||+++|++|.-++...=|+-+|++ +..+-|+|+..+....+.+-.+....  +++|++++..+-.
T Consensus       399 -RAWYGLGQaYeim~Mh~YaLyYfqk-A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  399 -RAWYGLGQAYEIMKMHFYALYYFQK-ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             -HHHhhhhHHHHHhcchHHHHHHHHH-HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence             4566666666666666666666666 55566666655444444443333333  5666666665544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.87  E-value=3.9e-08  Score=113.78  Aligned_cols=104  Identities=20%  Similarity=0.307  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +.+.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|...++++++.     .|+++     
T Consensus       192 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-----  261 (899)
T TIGR02917       192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKK-----APNSP-----  261 (899)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCc-----
Confidence            44455555555555555555555555555555555555555555555555555555555555332     22211     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                        .+++..|.++...|++++|+..|++ +...+|++.
T Consensus       262 --~~~~~~~~~~~~~~~~~~A~~~~~~-~l~~~~~~~  295 (899)
T TIGR02917       262 --LAHYLKALVDFQKKNYEDARETLQD-ALKSAPEYL  295 (899)
T ss_pred             --hHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCCCch
Confidence              1334455666666666666666666 444455543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.82  E-value=7.4e-08  Score=102.33  Aligned_cols=136  Identities=21%  Similarity=0.175  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      .++.+|..+.+.|++++|+..++++++.+|++..+++.+|.++...|++++|++.|+++++.     +|.      ....
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~------~~~~  250 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPE------YLSE  250 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----Chh------hHHH
Confidence            46688989999999999999999999999999999999999999999999999999999653     232      1123


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHH
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLL  519 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l  519 (565)
                      ++..++.+|...|++++|++.+++ +...+|+.... ......+...+..-  .+.++++++.+|+...+.
T Consensus       251 ~~~~l~~~~~~~g~~~~A~~~l~~-~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~  319 (389)
T PRK11788        251 VLPKLMECYQALGDEAEGLEFLRR-ALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH  319 (389)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            456689999999999999999999 55567765421 11111111111111  788999999999876543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.82  E-value=7.9e-09  Score=82.21  Aligned_cols=65  Identities=26%  Similarity=0.404  Sum_probs=62.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISK  432 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g-~~~eA~~~~~rAl~l  432 (565)
                      +++.+..+|..+...|++++|+..|+++++.||+++.+|+.+|.++...| ++++|+++|++|+++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            57889999999999999999999999999999999999999999999999 799999999999765

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.82  E-value=3.9e-08  Score=108.67  Aligned_cols=139  Identities=17%  Similarity=0.111  Sum_probs=104.2

Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHCCC---CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHH
Q 008435          360 LKISVENLTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGL--------LEEAVEYLEC  428 (565)
Q Consensus       360 ~~~~~~~~~~~~l~~lA~~l~~~g~---~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~--------~~eA~~~~~r  428 (565)
                      .+..+.+.++.+++.+|..+...++   .++|+.+|++|+++||+++.+|..++.+|.....        .++|.+..++
T Consensus       330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            4566778889999999999987655   7789999999999999999999999998876532        3344555555


Q ss_pred             HHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-------
Q 008435          429 AISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-------  501 (565)
Q Consensus       429 Al~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-------  501 (565)
                      ++++   ..+|.++       .+|..+|..+...|++++|..++++ +..++|. ..       ++..+|..+       
T Consensus       410 a~al---~~~~~~~-------~~~~ala~~~~~~g~~~~A~~~l~r-Al~L~ps-~~-------a~~~lG~~~~~~G~~~  470 (517)
T PRK10153        410 IVAL---PELNVLP-------RIYEILAVQALVKGKTDEAYQAINK-AIDLEMS-WL-------NYVLLGKVYELKGDNR  470 (517)
T ss_pred             hhhc---ccCcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCC-HH-------HHHHHHHHHHHcCCHH
Confidence            5332   1223222       4567788888899999999999999 6778873 32       233455444       


Q ss_pred             --HHHHHHHHhcCCCcHH
Q 008435          502 --ANITFLIFATSPSIIN  517 (565)
Q Consensus       502 --~~~l~~Al~l~P~~~~  517 (565)
                        ++.|++|+.++|.+..
T Consensus       471 eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        471 LAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHhcCCCCch
Confidence              8999999999998764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.82  E-value=3.5e-08  Score=79.86  Aligned_cols=98  Identities=27%  Similarity=0.366  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      .++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++|+++++.     .|.+.       .
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-------~   69 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-----DPDNA-------K   69 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcch-------h
Confidence            46788999999999999999999999999999999999999999999999999999999653     34322       3


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      ++..+|.++...|++++|.+++++ +...+|
T Consensus        70 ~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~   99 (100)
T cd00189          70 AYYNLGLAYYKLGKYEEALEAYEK-ALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHH-HHccCC
Confidence            567799999999999999999999 554444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=3.6e-08  Score=103.82  Aligned_cols=173  Identities=17%  Similarity=0.146  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      -+..+|..+.++.+.++-...|++|.++||+|++.|+..|++++-.+++++|+.-|++++++     +|.+.       .
T Consensus       362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-----~pe~~-------~  429 (606)
T KOG0547|consen  362 LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-----DPENA-------Y  429 (606)
T ss_pred             HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-----Chhhh-------H
Confidence            38888999999999999999999999999999999999999999999999999999999775     34322       4


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCc------HH-----
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSI------IN-----  517 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~------~~-----  517 (565)
                      ++..++.+.+++++++++...|+. +....|+-+.....+.+.+.--.++-  .+.|.+++++.|..      ..     
T Consensus       430 ~~iQl~~a~Yr~~k~~~~m~~Fee-~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K  508 (606)
T KOG0547|consen  430 AYIQLCCALYRQHKIAESMKTFEE-AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK  508 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence            677788889999999999999999 77789999988777776665555555  88999999998871      10     


Q ss_pred             --H---H-HhhhhhhHHHhhhhhhhhhhhhhhhccchhHHHHHHHH
Q 008435          518 --L---L-TVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAM  557 (565)
Q Consensus       518 --~---l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (565)
                        +   | .+.++...++..+.++. .|=+-||-++|-+-+.-+.+
T Consensus       509 a~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i  553 (606)
T KOG0547|consen  509 ALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKI  553 (606)
T ss_pred             hHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhH
Confidence              1   1 22233334444444444 44888888888776665554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.81  E-value=8.6e-09  Score=105.13  Aligned_cols=120  Identities=23%  Similarity=0.293  Sum_probs=89.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      .++..++..|..+.+.|+.++|+..+++|++.+|+|..++..++.++...|+.+++.+.+++..+.     .|+++    
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-----~~~~~----  214 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-----APDDP----  214 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSC----
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-----CcCHH----
Confidence            367788899999999999999999999999999999999999999999999999987777776443     13322    


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR  499 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~  499 (565)
                         ..+..+|.++..+|++++|+.+|++ +...+|+|+....+|.+++...|.
T Consensus       215 ---~~~~~la~~~~~lg~~~~Al~~~~~-~~~~~p~d~~~~~~~a~~l~~~g~  263 (280)
T PF13429_consen  215 ---DLWDALAAAYLQLGRYEEALEYLEK-ALKLNPDDPLWLLAYADALEQAGR  263 (280)
T ss_dssp             ---CHCHHHHHHHHHHT-HHHHHHHHHH-HHHHSTT-HHHHHHHHHHHT----
T ss_pred             ---HHHHHHHHHhccccccccccccccc-cccccccccccccccccccccccc
Confidence               1244588999999999999999999 666899999776655555444443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.81  E-value=7.8e-09  Score=81.38  Aligned_cols=60  Identities=33%  Similarity=0.540  Sum_probs=56.5

Q ss_pred             HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +.+|..+++.|++++|+..|+++++.+|+++++|+.+|.++...|++++|+++|+++++.
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999999765

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.81  E-value=4.5e-08  Score=99.09  Aligned_cols=109  Identities=20%  Similarity=0.191  Sum_probs=93.1

Q ss_pred             CCCHHHHHHHHHHH-HHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          366 NLTPKELIALSVKF-LSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       366 ~~~~~~l~~lA~~l-~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      +.+....|..|..+ ...|++++|+..|++.++.+|++   +.+++++|.+|+..|++++|+.+|+++++.     .|++
T Consensus       139 ~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~s  213 (263)
T PRK10803        139 SGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPKS  213 (263)
T ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC
Confidence            44678889999987 56799999999999999999999   589999999999999999999999999765     3543


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      +    ....+++.+|.++..+|++++|++.|++ +....|+..
T Consensus       214 ~----~~~dAl~klg~~~~~~g~~~~A~~~~~~-vi~~yP~s~  251 (263)
T PRK10803        214 P----KAADAMFKVGVIMQDKGDTAKAKAVYQQ-VIKKYPGTD  251 (263)
T ss_pred             c----chhHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCcCCH
Confidence            3    2235788899999999999999999999 555667655

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.78  E-value=1e-07  Score=93.92  Aligned_cols=109  Identities=19%  Similarity=0.237  Sum_probs=93.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +.+.+.+-.+|..+...|++.+|+..+++|..++|+|.++|..+|.+|.+.|++++|...|.+|+++     .|.++   
T Consensus        97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~p---  168 (257)
T COG5010          97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNEP---  168 (257)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCCc---
Confidence            4466777779999999999999999999999999999999999999999999999999999999765     45544   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhh
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK  487 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~  487 (565)
                          .+..++|..+.-.|+++.|..++.+ +....+.|..+.
T Consensus       169 ----~~~nNlgms~~L~gd~~~A~~lll~-a~l~~~ad~~v~  205 (257)
T COG5010         169 ----SIANNLGMSLLLRGDLEDAETLLLP-AYLSPAADSRVR  205 (257)
T ss_pred             ----hhhhhHHHHHHHcCCHHHHHHHHHH-HHhCCCCchHHH
Confidence                3567799999999999999999999 554555565443

>PLN02789 farnesyltranstransferase

Probab=98.76  E-value=1.4e-07  Score=98.18  Aligned_cols=128  Identities=10%  Similarity=0.021  Sum_probs=70.7

Q ss_pred             HHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008435          379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV  457 (565)
Q Consensus       379 l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g-~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~  457 (565)
                      +...++.++|+..+.++|+++|++..+|+..|.++...| ++++|++.++++++.     +|++.       .+|.+.+.
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-----npkny-------qaW~~R~~  114 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-----NPKNY-------QIWHHRRW  114 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-----CCcch-------HHhHHHHH
Confidence            344567777777777777777777777777777777776 467777777777543     34332       23444555


Q ss_pred             HHHHcCCH--HHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHH
Q 008435          458 ACIRQEKW--EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLL  519 (565)
Q Consensus       458 a~~~~g~~--~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l  519 (565)
                      ++...|+.  +++++.+++ +...+|++-.++.+....+..++...  ++++.++++.||++..+|
T Consensus       115 ~l~~l~~~~~~~el~~~~k-al~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW  179 (320)
T PLN02789        115 LAEKLGPDAANKELEFTRK-ILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW  179 (320)
T ss_pred             HHHHcCchhhHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence            55555542  445555555 44455555443322211221222111  555555555555544433

>PRK11906 transcriptional regulator; Provisional

Probab=98.76  E-value=6.6e-08  Score=102.79  Aligned_cols=143  Identities=10%  Similarity=0.082  Sum_probs=112.7

Q ss_pred             hhcCCCCCC---CHH--HHHHHHHHHHHCC---CCCchHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---C------C
Q 008435          359 QLKISVENL---TPK--ELIALSVKFLSKG---DKERPIPLLQLAL---NKEPDNINALILMGQTQLQK---G------L  418 (565)
Q Consensus       359 ~~~~~~~~~---~~~--~l~~lA~~l~~~g---~~~eAi~~l~~AL---~~dP~~a~A~~~LG~~~~~~---g------~  418 (565)
                      .++.++++.   +++  ++|..|..++..+   +.++|+.+|++|+   ++||+++.+|..++.++...   |      .
T Consensus       240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~  319 (458)
T PRK11906        240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA  319 (458)
T ss_pred             hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            456667777   888  9999999987766   5567999999999   99999999999999998865   2      3


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHH--
Q 008435          419 LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV--  496 (565)
Q Consensus       419 ~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~--  496 (565)
                      ..+|.++.++|+++     +|.|+       .++..+|.+....|+++.|...|++ +..++|+.+..  +|+.+++.  
T Consensus       320 ~~~a~~~A~rAvel-----d~~Da-------~a~~~~g~~~~~~~~~~~a~~~f~r-A~~L~Pn~A~~--~~~~~~~~~~  384 (458)
T PRK11906        320 AQKALELLDYVSDI-----TTVDG-------KILAIMGLITGLSGQAKVSHILFEQ-AKIHSTDIASL--YYYRALVHFH  384 (458)
T ss_pred             HHHHHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHhhcchhhHHHHHHH-HhhcCCccHHH--HHHHHHHHHH
Confidence            46788888888654     56655       4778899999999999999999999 88899999866  44333322  


Q ss_pred             HHHHH--HHHHHHHHhcCCCcH
Q 008435          497 LARYV--ANITFLIFATSPSII  516 (565)
Q Consensus       497 La~~l--~~~l~~Al~l~P~~~  516 (565)
                      -|...  .+.++++++++|.-.
T Consensus       385 ~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        385 NEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             cCCHHHHHHHHHHHhccCchhh
Confidence            11111  899999999999744

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.74  E-value=1.2e-07  Score=110.38  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      .+.++..+..+|..+...|++++|+.+++++++.+|+++.++..+|.++...|++++|+++++++++.     +|+++  
T Consensus        45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~~--  117 (765)
T PRK10049         45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-----APDKA--  117 (765)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH--
Confidence            56667777788888888888888888888888888888888888888888888888888888888543     45443  


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                           . +..+|.++...|++++|+..+++ +...+|+++..
T Consensus       118 -----~-~~~la~~l~~~g~~~~Al~~l~~-al~~~P~~~~~  152 (765)
T PRK10049        118 -----N-LLALAYVYKRAGRHWDELRAMTQ-ALPRAPQTQQY  152 (765)
T ss_pred             -----H-HHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHH
Confidence                 2 44577788888888888888888 55677777654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.73  E-value=2.2e-07  Score=87.47  Aligned_cols=103  Identities=20%  Similarity=0.225  Sum_probs=77.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ..+..++..|..+...|++++|+..|++++.+.|++   +.+|+.+|.++...|++++|+++|++|+++     +|...+
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-----~~~~~~  107 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-----NPFLPQ  107 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHH
Confidence            346778999999999999999999999999997763   569999999999999999999999999754     454331


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      .......++..+|..+...|++++|+..+++
T Consensus       108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            1111112333344444488888877777766

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.69  E-value=1.1e-07  Score=96.89  Aligned_cols=143  Identities=18%  Similarity=0.174  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKE--PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d--P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      +..+......+...++++++...++++....  ++++..|..+|.++.+.|++++|++.|++|+++     +|+++    
T Consensus       110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~----  180 (280)
T PF13429_consen  110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDP----  180 (280)
T ss_dssp             --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-H----
T ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH----
Confidence            3444455566788999999999999987766  789999999999999999999999999999775     46544    


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhh
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNI  524 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~  524 (565)
                         .+...++.++...|+++++.+.+++ .....|.++.....+..++..++..-  ..+++++++.+|+....+.....
T Consensus       181 ---~~~~~l~~~li~~~~~~~~~~~l~~-~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~  256 (280)
T PF13429_consen  181 ---DARNALAWLLIDMGDYDEAREALKR-LLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD  256 (280)
T ss_dssp             ---HHHHHHHHHHCTTCHHHHHHHHHHH-HHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHCCChHHHHHHHHH-HHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence               2455578889999999999999988 55566788876555555555555444  89999999999987766555433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.67  E-value=1.5e-07  Score=89.05  Aligned_cols=119  Identities=18%  Similarity=0.141  Sum_probs=91.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      ...+..++.+|..+...|++++|+.+|+++++.+|+.   +.+++.+|.++...|++++|+++|+++++.     +|.+.
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~  106 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-----NPKQP  106 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH
Confidence            3456778999999999999999999999999988764   579999999999999999999999999764     34432


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHHHHHHHHHHhcCCCc
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSPSI  515 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l~~~l~~Al~l~P~~  515 (565)
                             .++..+|.++...|+...+...+++ +..          .+     ..+   .++++++++.+|+.
T Consensus       107 -------~~~~~lg~~~~~~g~~~~a~~~~~~-A~~----------~~-----~~A---~~~~~~a~~~~p~~  153 (172)
T PRK02603        107 -------SALNNIAVIYHKRGEKAEEAGDQDE-AEA----------LF-----DKA---AEYWKQAIRLAPNN  153 (172)
T ss_pred             -------HHHHHHHHHHHHcCChHhHhhCHHH-HHH----------HH-----HHH---HHHHHHHHhhCchh
Confidence                   3466789999888887776666655 220          01     001   46678888888864

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.67  E-value=4.1e-07  Score=91.89  Aligned_cols=131  Identities=21%  Similarity=0.247  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +.-+|++|..+....+.++|+..+++|++.||++++|-..+|.++...|+++.|++.++++++.           +++..
T Consensus       180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----------n~~yl  248 (389)
T COG2956         180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-----------NPEYL  248 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-----------ChHHH
Confidence            5678999999999999999999999999999999999999999999999999999999999754           34555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL  519 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l  519 (565)
                      .++...|-.||.++|+.++++..+.+ +.+.+++...        ...++...         ..++.+-+..+|+...+.
T Consensus       249 ~evl~~L~~~Y~~lg~~~~~~~fL~~-~~~~~~g~~~--------~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~  319 (389)
T COG2956         249 SEVLEMLYECYAQLGKPAEGLNFLRR-AMETNTGADA--------ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH  319 (389)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHH-HHHccCCccH--------HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence            56677788999999999999999999 5444443321        11222222         677788899999977654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.67  E-value=3.6e-07  Score=90.44  Aligned_cols=110  Identities=17%  Similarity=0.237  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhhhcC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQK--------GLLEEAVEYLECAISKLFLAG  437 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~---A~~~LG~~~~~~--------g~~~eA~~~~~rAl~l~~l~~  437 (565)
                      .+.++.+|..+...|++++|+..++++++.+|+++.   +++.+|.++...        |++++|++.|+++++.     
T Consensus        70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----  144 (235)
T TIGR03302        70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----  144 (235)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----
Confidence            456789999999999999999999999999999877   799999999987        7899999999999754     


Q ss_pred             CCCChhhhhHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          438 HPTEPEAIDLL----------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       438 ~P~~~~~~~~~----------~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      +|++.......          ......+|..+...|++++|+..+++ +....|+++
T Consensus       145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~-al~~~p~~~  200 (235)
T TIGR03302       145 YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET-VVENYPDTP  200 (235)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHCCCCc
Confidence            46543211111          01234678899999999999999999 666777765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.67  E-value=7e-07  Score=103.52  Aligned_cols=170  Identities=12%  Similarity=0.019  Sum_probs=117.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +..+...+..+....++|++++|+..|+++++.+|+++.+.+.+..++...|+.++|+.++++++       +|.+.   
T Consensus        31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-------~p~n~---  100 (822)
T PRK14574         31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-------SSMNI---  100 (822)
T ss_pred             ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-------cCCCC---
Confidence            33567889999999999999999999999999999997665589999999999999999999994       23221   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcH
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSII  516 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~  516 (565)
                      +  ......+|.++..+|++++|++.|++ +...+|+++....       .++..+         .+.++++++.+|+..
T Consensus       101 ~--~~~llalA~ly~~~gdyd~Aiely~k-aL~~dP~n~~~l~-------gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~  170 (822)
T PRK14574        101 S--SRGLASAARAYRNEKRWDQALALWQS-SLKKDPTNPDLIS-------GMIMTQADAGRGGVVLKQATELAERDPTVQ  170 (822)
T ss_pred             C--HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHH-------HHHHHHhhcCCHHHHHHHHHHhcccCcchH
Confidence            1  12233457789999999999999999 6778999875432       222222         778888888889865


Q ss_pred             HHHHhhh------hhhHHHhhhhhhhh--hhhhhhhccchhHHHHHH
Q 008435          517 NLLTVSN------IIDIIYVNCYELKK--KRFASCFFGFSVLYVMLV  555 (565)
Q Consensus       517 ~~l~~~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  555 (565)
                      ..+....      +..+.++.+.++.+  +-.++++.++-.+..+++
T Consensus       171 ~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~  217 (822)
T PRK14574        171 NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR  217 (822)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            4332221      11122232222211  225566666655555544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=9e-07  Score=93.88  Aligned_cols=115  Identities=23%  Similarity=0.273  Sum_probs=100.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +......|..|...+..|++++|++.++..+...|+|+..+-..|.++...++.++|.+.+++++++     +|+.+   
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----~P~~~---  374 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-----DPNSP---  374 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcc---
Confidence            3567788999999999999999999999999999999999999999999999999999999999654     46533   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhH
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG  493 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~  493 (565)
                          ....++|.++.+.|+++||+..+++ ....+|+||..+..+.++
T Consensus       375 ----~l~~~~a~all~~g~~~eai~~L~~-~~~~~p~dp~~w~~LAqa  417 (484)
T COG4783         375 ----LLQLNLAQALLKGGKPQEAIRILNR-YLFNDPEDPNGWDLLAQA  417 (484)
T ss_pred             ----HHHHHHHHHHHhcCChHHHHHHHHH-HhhcCCCCchHHHHHHHH
Confidence                2466799999999999999999999 777899999765533333

>PLN02789 farnesyltranstransferase

Probab=98.66  E-value=1.9e-07  Score=97.21  Aligned_cols=142  Identities=9%  Similarity=-0.038  Sum_probs=111.8

Q ss_pred             CCCCHHHHHHHHHHHHHCC-CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhhhhcCCCCC
Q 008435          365 ENLTPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL--EEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g-~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~--~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      .+.+...+..++..+...| ++++|+..++++++.+|++..+|+..|.++...|+.  ++++++++++++.     +|++
T Consensus        67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~-----dpkN  141 (320)
T PLN02789         67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL-----DAKN  141 (320)
T ss_pred             CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh-----Cccc
Confidence            3445566777787887777 679999999999999999999999999999999874  7889999999654     4554


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH---HH------HHHHHHHHHHhcC
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL---AR------YVANITFLIFATS  512 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L---a~------~l~~~l~~Al~l~  512 (565)
                      .       .+|.+.|.++...|++++|++.+++ +...+|++..++.+....+..+   +.      ..+++..+++..+
T Consensus       142 y-------~AW~~R~w~l~~l~~~~eeL~~~~~-~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~  213 (320)
T PLN02789        142 Y-------HAWSHRQWVLRTLGGWEDELEYCHQ-LLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN  213 (320)
T ss_pred             H-------HHHHHHHHHHHHhhhHHHHHHHHHH-HHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence            4       5788899999999999999999999 6678999987654433222222   10      1178889999999


Q ss_pred             CCcHHHH
Q 008435          513 PSIINLL  519 (565)
Q Consensus       513 P~~~~~l  519 (565)
                      |++..+|
T Consensus       214 P~N~SaW  220 (320)
T PLN02789        214 PRNESPW  220 (320)
T ss_pred             CCCcCHH
Confidence            9976655

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.65  E-value=9.3e-08  Score=95.92  Aligned_cols=106  Identities=16%  Similarity=0.134  Sum_probs=88.8

Q ss_pred             hhhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008435          357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA  436 (565)
Q Consensus       357 ~~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~  436 (565)
                      .|..+|...|.++.-+|.+|.+|.+.|+++.|++-++.||++||++.++|..||.+|..+|++++|++.|+||++     
T Consensus       103 kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLe-----  177 (304)
T KOG0553|consen  103 KYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE-----  177 (304)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc-----
Confidence            567889999999999999999999999999999999999999999999999999999999999999999999954     


Q ss_pred             CCCCChhhhhHHHHHHHHHHHHHHHcCCHH---HHHHHHHH
Q 008435          437 GHPTEPEAIDLLIVASQWSGVACIRQEKWE---EGIAHLER  474 (565)
Q Consensus       437 ~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~---eAi~~ler  474 (565)
                      ++|++..       ..-+|..+...+++..   .+...++-
T Consensus       178 ldP~Ne~-------~K~nL~~Ae~~l~e~~~~~~~~~~~d~  211 (304)
T KOG0553|consen  178 LDPDNES-------YKSNLKIAEQKLNEPKSSAQASGSFDM  211 (304)
T ss_pred             cCCCcHH-------HHHHHHHHHHHhcCCCcccccccchhh
Confidence            5687651       2334666666666655   44444444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.64  E-value=1e-07  Score=75.72  Aligned_cols=68  Identities=34%  Similarity=0.477  Sum_probs=59.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcc
Q 008435          401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLK  479 (565)
Q Consensus       401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g-~~~eAi~~leraa~~l  479 (565)
                      +++.+|..+|.++...|++++|+.+|++|++.     +|+++       .+++++|.++..+| ++++|++.+++ +..+
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~~-------~~~~~~g~~~~~~~~~~~~A~~~~~~-al~l   67 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNNA-------EAYYNLGLAYMKLGKDYEEAIEDFEK-ALKL   67 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STTHH-------HHHHHHHHHHHHTTTHHHHHHHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHHHHHhCccHHHHHHHHHH-HHHc
Confidence            47899999999999999999999999999875     35433       47899999999999 79999999999 6656


Q ss_pred             CC
Q 008435          480 EP  481 (565)
Q Consensus       480 ~P  481 (565)
                      +|
T Consensus        68 ~P   69 (69)
T PF13414_consen   68 DP   69 (69)
T ss_dssp             ST
T ss_pred             Cc
Confidence            65

...

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=2.4e-07  Score=96.68  Aligned_cols=120  Identities=18%  Similarity=0.159  Sum_probs=101.6

Q ss_pred             CCchh-hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          354 ESPAK-QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       354 ~~~~~-~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +..+| -..+..+..++..+..+|...+..|++++|...|+.||.-|..+.+|+++.|..+..+|+.+||+++|-+.-.+
T Consensus       474 ~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i  553 (840)
T KOG2003|consen  474 DAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI  553 (840)
T ss_pred             HHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH
Confidence            34455 23456667788999999999999999999999999999999999999999999999999999999999887544


Q ss_pred             hhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      +   +         ....+++.++.+|..+++..+|++++-+ +..+-|+||..
T Consensus       554 l---~---------nn~evl~qianiye~led~aqaie~~~q-~~slip~dp~i  594 (840)
T KOG2003|consen  554 L---L---------NNAEVLVQIANIYELLEDPAQAIELLMQ-ANSLIPNDPAI  594 (840)
T ss_pred             H---H---------hhHHHHHHHHHHHHHhhCHHHHHHHHHH-hcccCCCCHHH
Confidence            2   0         0124677899999999999999999999 77889999864

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.64  E-value=3.3e-07  Score=104.40  Aligned_cols=113  Identities=11%  Similarity=-0.047  Sum_probs=98.8

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+.+...|.+.......|..+.+.+++++|+..++++++.+|+++.+++.+|.++.+.|+++||+++|+++++     .+
T Consensus       110 ~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~-----~~  184 (694)
T PRK15179        110 RGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR-----QH  184 (694)
T ss_pred             HHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh-----cC
Confidence            4556666778899999999999999999999999999999999999999999999999999999999999964     34


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE  483 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~  483 (565)
                      |+++       .++.++|.++...|+.++|...|++++....|.-
T Consensus       185 p~~~-------~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        185 PEFE-------NGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             CCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            5433       4688899999999999999999999666555443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.63  E-value=6.8e-08  Score=80.23  Aligned_cols=81  Identities=26%  Similarity=0.292  Sum_probs=66.2

Q ss_pred             HCCCCCchHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHH
Q 008435          381 SKGDKERPIPLLQLALNKEPD--NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA  458 (565)
Q Consensus       381 ~~g~~~eAi~~l~~AL~~dP~--~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a  458 (565)
                      .+|++++|+..++++++.+|.  +...++.+|.++++.|++++|++.+++ .+..           .. ....++.+|.|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----------~~-~~~~~~l~a~~   67 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----------PS-NPDIHYLLARC   67 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----------HC-HHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----------CC-CHHHHHHHHHH
Confidence            368999999999999999995  577788899999999999999999988 3321           11 12356668999


Q ss_pred             HHHcCCHHHHHHHHHH
Q 008435          459 CIRQEKWEEGIAHLER  474 (565)
Q Consensus       459 ~~~~g~~~eAi~~ler  474 (565)
                      +..+|++++|+++|++
T Consensus        68 ~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHTT-HHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhc
Confidence            9999999999999998

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.62  E-value=4.2e-07  Score=90.62  Aligned_cols=107  Identities=21%  Similarity=0.248  Sum_probs=92.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      +++.+|+.|..++..|+|.+|+..|+.-++..|++   ++|+|+||.+++.+|++++|...|.++++.     .|+.+..
T Consensus       140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~KA  214 (262)
T COG1729         140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPKA  214 (262)
T ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCCC
Confidence            45569999999999999999999999999999997   789999999999999999999999999653     4655433


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      +    ++++.+|.+..++|+.|+|...|++ +...-|..+
T Consensus       215 p----dallKlg~~~~~l~~~d~A~atl~q-v~k~YP~t~  249 (262)
T COG1729         215 P----DALLKLGVSLGRLGNTDEACATLQQ-VIKRYPGTD  249 (262)
T ss_pred             h----HHHHHHHHHHHHhcCHHHHHHHHHH-HHHHCCCCH
Confidence            3    4677899999999999999999999 444555554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=2.4e-07  Score=99.35  Aligned_cols=147  Identities=18%  Similarity=0.189  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      .-.+-+|..+.+.++.+.|..+|.+|+.+.|+++-.++.+|.+.+..+.|.+|+.+|+.++... -...+.   .+ ...
T Consensus       381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i-k~~~~e---~~-~w~  455 (611)
T KOG1173|consen  381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI-KSVLNE---KI-FWE  455 (611)
T ss_pred             chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh-hhcccc---cc-chh
Confidence            3466789999999999999999999999999999999999999999999999999999997432 011111   11 111


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH---HHHHhh
Q 008435          450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII---NLLTVS  522 (565)
Q Consensus       450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~---~~l~~~  522 (565)
                      -.+.++|.++.+++++++|+..+++ +..++|.++.......-.+..+|..-  +++|.+++.++|+..   +.++.+
T Consensus       456 p~~~NLGH~~Rkl~~~~eAI~~~q~-aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  456 PTLNNLGHAYRKLNKYEEAIDYYQK-ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA  532 (611)
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHH-HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            2366799999999999999999999 77799999865432211111222222  899999999999863   444443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.62  E-value=4.5e-07  Score=83.87  Aligned_cols=119  Identities=11%  Similarity=0.074  Sum_probs=89.3

Q ss_pred             HHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHH
Q 008435          393 QLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAH  471 (565)
Q Consensus       393 ~~AL~~d-P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~  471 (565)
                      .-...++ ++.-+..|.+|..+++.|++++|+..|+-....     +|.+.       .-+++||.++..+|++++|++.
T Consensus        24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~-------~y~~gLG~~~Q~~g~~~~AI~a   91 (157)
T PRK15363         24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-----DAWSF-------DYWFRLGECCQAQKHWGEAIYA   91 (157)
T ss_pred             HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccH-------HHHHHHHHHHHHHhhHHHHHHH
Confidence            4456788 899999999999999999999999999998543     45433       4588899999999999999999


Q ss_pred             HHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcC---CCcHHHHHhhhh
Q 008435          472 LERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATS---PSIINLLTVSNI  524 (565)
Q Consensus       472 leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~---P~~~~~l~~~~~  524 (565)
                      |.+ +..++|+||....+...++..+|+.-  .+.|+.++..-   |.+..+.++.+.
T Consensus        92 Y~~-A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~  148 (157)
T PRK15363         92 YGR-AAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK  148 (157)
T ss_pred             HHH-HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence            999 77799999976443333333333333  67777777654   555555554443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=1.8e-06  Score=84.81  Aligned_cols=141  Identities=13%  Similarity=0.027  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ...--..|..+...|++++|+++|+..|+.||.|.-++-..=-+.-.+|+.-+|++....-++.     .+.|.      
T Consensus        86 ~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~------  154 (289)
T KOG3060|consen   86 KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQ------  154 (289)
T ss_pred             hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcH------
Confidence            3344566777777888888888888888888888888777777777778888888777766543     23332      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-----HHHHHHHHhcCCCcHHHHHhh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-----ANITFLIFATSPSIINLLTVS  522 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-----~~~l~~Al~l~P~~~~~l~~~  522 (565)
                       ++|..++.+|...|+|++|.-.||+ ....+|.+|.....+.+.++..|..-     .++|.++++++|.+-..+-++
T Consensus       155 -EAW~eLaeiY~~~~~f~kA~fClEE-~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  155 -EAWHELAEIYLSEGDFEKAAFCLEE-LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             -HHHHHHHHHHHhHhHHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence             4778899999999999999999999 66689999877666777666666544     899999999999655444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=4.1e-07  Score=91.69  Aligned_cols=115  Identities=16%  Similarity=0.190  Sum_probs=99.5

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhh
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFL  435 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l  435 (565)
                      ...+...|-|++.+..+|..++..|+++.|...|++|++++|+|++.+..+|.+++...   ...+|.+.+++|++    
T Consensus       146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~----  221 (287)
T COG4235         146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA----  221 (287)
T ss_pred             HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh----
Confidence            45666677789999999999999999999999999999999999999999999987664   35889999999965    


Q ss_pred             cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       436 ~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                       .||.|.       .+.+.+|..++++|+|++|+..++.+...+.|+++.
T Consensus       222 -~D~~~i-------ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         222 -LDPANI-------RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             -cCCccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence             456654       567789999999999999999999977767777764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.60  E-value=8.3e-07  Score=103.31  Aligned_cols=135  Identities=9%  Similarity=0.023  Sum_probs=112.7

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ..+.++........+..-.|+.++|+..++++...+|..+.++..+|.++...|++++|+++|++++++     +|.++ 
T Consensus        10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~-   83 (765)
T PRK10049         10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-----EPQND-   83 (765)
T ss_pred             ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-
Confidence            445667777777777889999999999999999999999999999999999999999999999999654     56554 


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCC
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPS  514 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~  514 (565)
                            .++..++.++...|++++|++++++ +...+|+++. ..       .+|..+         ++.++++++.+|+
T Consensus        84 ------~a~~~la~~l~~~g~~~eA~~~l~~-~l~~~P~~~~-~~-------~la~~l~~~g~~~~Al~~l~~al~~~P~  148 (765)
T PRK10049         84 ------DYQRGLILTLADAGQYDEALVKAKQ-LVSGAPDKAN-LL-------ALAYVYKRAGRHWDELRAMTQALPRAPQ  148 (765)
T ss_pred             ------HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHH-HH-------HHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence                  3456789999999999999999999 6667898875 32       333333         8999999999999


Q ss_pred             cHHHH
Q 008435          515 IINLL  519 (565)
Q Consensus       515 ~~~~l  519 (565)
                      ..+++
T Consensus       149 ~~~~~  153 (765)
T PRK10049        149 TQQYP  153 (765)
T ss_pred             CHHHH
Confidence            77654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.60  E-value=1.9e-06  Score=85.11  Aligned_cols=107  Identities=22%  Similarity=0.254  Sum_probs=95.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +.+. +..+..+...|+-+++.....+++..+|.+.+.+..+|..+.+.|++.+|+..+++|.     .++|+|.     
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-----~l~p~d~-----  134 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-----RLAPTDW-----  134 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-----ccCCCCh-----
Confidence            3444 7888889999999999999999999999999999999999999999999999999994     4567766     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                        .++..+|.+|.+.|++++|...|.+ +..+.|++|....
T Consensus       135 --~~~~~lgaaldq~Gr~~~Ar~ay~q-Al~L~~~~p~~~n  172 (257)
T COG5010         135 --EAWNLLGAALDQLGRFDEARRAYRQ-ALELAPNEPSIAN  172 (257)
T ss_pred             --hhhhHHHHHHHHccChhHHHHHHHH-HHHhccCCchhhh
Confidence              4577799999999999999999999 7779999997644

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.58  E-value=1.3e-06  Score=87.63  Aligned_cols=108  Identities=16%  Similarity=0.130  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINAL---ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~---~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      .++++.+..|..+...|++++|+..|++++..+|+...+.   +.+|.++.+.+++++|+.+|++.++.     .|+++.
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~~~~  104 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPN  104 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcCCCc
Confidence            4788999999999999999999999999999999997665   99999999999999999999999765     576552


Q ss_pred             hhhHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHhhccCCCCc
Q 008435          444 AIDLLIVASQWSGVACIRQE---------------K---WEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g---------------~---~~eAi~~leraa~~l~P~~~  484 (565)
                      .    ..+++.+|.++...+               +   ..+|++.|++ ....-|+..
T Consensus       105 ~----~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~-li~~yP~S~  158 (243)
T PRK10866        105 I----DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK-LVRGYPNSQ  158 (243)
T ss_pred             h----HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH-HHHHCcCCh
Confidence            2    246788888865544               1   2467788888 555666654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.57  E-value=8.6e-08  Score=96.65  Aligned_cols=150  Identities=13%  Similarity=0.145  Sum_probs=114.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       362 ~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      +..-|.+.--++.+|..+...+++++|.++|+.+++.+|.|+++..-.|.-|+..++++-|+.+|+|.+.+.     -.+
T Consensus       283 ld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~~s  357 (478)
T KOG1129|consen  283 LDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----AQS  357 (478)
T ss_pred             hhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-----CCC
Confidence            333455566688899999999999999999999999999999999999999999999999999999997653     111


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHH--HHH--HHHHHHHHhcCCCcHH
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA--RYV--ANITFLIFATSPSIIN  517 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La--~~l--~~~l~~Al~l~P~~~~  517 (565)
                      +       +-+.++|.|+...+++|-++..|+|+.......+-....||..+.+..+  ...  ..+++-++.-||++.+
T Consensus       358 p-------eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e  430 (478)
T KOG1129|consen  358 P-------ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE  430 (478)
T ss_pred             h-------HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence            2       2467799999999999999999999544333222334556644433322  111  7899999999999988


Q ss_pred             HHHhhh
Q 008435          518 LLTVSN  523 (565)
Q Consensus       518 ~l~~~~  523 (565)
                      ++.+..
T Consensus       431 alnNLa  436 (478)
T KOG1129|consen  431 ALNNLA  436 (478)
T ss_pred             HHHhHH
Confidence            776653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.56  E-value=2.1e-06  Score=96.50  Aligned_cols=132  Identities=14%  Similarity=0.139  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ...++.+|..+...|++++|+..+..++..||.++.||+.||.+|.++|+.++|...+-.|.     -++|.+.   +  
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-----HL~p~d~---e--  208 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-----HLNPKDY---E--  208 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH-----hcCCCCh---H--
Confidence            56778889999999999999999999999999999999999999999999999999988883     3467654   1  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCC
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSP  513 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P  513 (565)
                        -|..++....++|++++|+-.|.| +...+|.+-+........+-..|..-  .+.+++.+.++|
T Consensus       209 --~W~~ladls~~~~~i~qA~~cy~r-AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  209 --LWKRLADLSEQLGNINQARYCYSR-AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             --HHHHHHHHHHhcccHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence              255588888999999999999999 66677776433222222222223332  789999999999

>PRK15331 chaperone protein SicA; Provisional

Probab=98.56  E-value=5.7e-07  Score=83.58  Aligned_cols=103  Identities=12%  Similarity=0.109  Sum_probs=89.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      .-+..|..|..+++.|++++|...|+-....||.+.+-|..||-++..+++|++|++.|..|..+     +++|+     
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~~~dp-----  105 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-----LKNDY-----  105 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccCCC-----
Confidence            35778999999999999999999999999999999999999999999999999999999999543     35544     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                        .+.+..|.|+..+|+.++|+..|+.+..  .|++.
T Consensus       106 --~p~f~agqC~l~l~~~~~A~~~f~~a~~--~~~~~  138 (165)
T PRK15331        106 --RPVFFTGQCQLLMRKAAKARQCFELVNE--RTEDE  138 (165)
T ss_pred             --CccchHHHHHHHhCCHHHHHHHHHHHHh--CcchH
Confidence              2356699999999999999999999433  45554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.54  E-value=1.7e-06  Score=76.83  Aligned_cols=99  Identities=22%  Similarity=0.165  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      ++-..|+.+.+.|+.+.|++.|.++|.+-|+.+.+|.+.++.+.-+|+.++|++-+++|+++.   ++..     .....
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~~t-----rtacq  116 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA---GDQT-----RTACQ  116 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc---Cccc-----hHHHH
Confidence            455678899999999999999999999999999999999999999999999999999998753   2211     12235


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      ++...|..|..+|+.|+|..-|+.++.
T Consensus       117 a~vQRg~lyRl~g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  117 AFVQRGLLYRLLGNDDAARADFEAAAQ  143 (175)
T ss_pred             HHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence            788899999999999999999999544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.50  E-value=3.5e-07  Score=71.85  Aligned_cols=65  Identities=26%  Similarity=0.406  Sum_probs=53.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       407 ~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      +.+|..+.+.|++++|++.|+++++     .+|+++       .+++++|.++..+|++++|+++|++ +...+|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~-----~~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~-a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALK-----QDPDNP-------EAWYLLGRILYQQGRYDEALAYYER-ALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHC-----CSTTHH-------HHHHHHHHHHHHTT-HHHHHHHHHH-HHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCcCCC
Confidence            4689999999999999999999964     345433       5788999999999999999999999 666888875

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.47  E-value=3.5e-06  Score=82.15  Aligned_cols=109  Identities=22%  Similarity=0.281  Sum_probs=84.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      .++++++..|..+++.|++++|+..|++.+...|++   ..|.+.+|.++...|++++|+..|++-++.     .|+.+.
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-----yP~~~~   77 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-----YPNSPK   77 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TT
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCcc
Confidence            368899999999999999999999999999999876   789999999999999999999999999765     365442


Q ss_pred             hhhHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhhccCCCCch
Q 008435          444 AIDLLIVASQWSGVACIRQ-----------EKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~-----------g~~~eAi~~leraa~~l~P~~~~  485 (565)
                          ...+++.+|.++..+           +...+|+..|++ ....-|+.+-
T Consensus        78 ----~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~-li~~yP~S~y  125 (203)
T PF13525_consen   78 ----ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEE-LIKRYPNSEY  125 (203)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHH-HHHH-TTSTT
T ss_pred             ----hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHH-HHHHCcCchH
Confidence                235788888886554           334589999999 5567777764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.45  E-value=1.5e-06  Score=91.17  Aligned_cols=107  Identities=14%  Similarity=0.068  Sum_probs=88.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +.....+..+|..+...|++++|+..++++++++|+++.++..+|.++.+.|++++|+++++++++.     .|.+   .
T Consensus       111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~-----~~~~---~  182 (355)
T cd05804         111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT-----WDCS---S  182 (355)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-----cCCC---c
Confidence            4456677788999999999999999999999999999999999999999999999999999999653     2321   1


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      ......+..+|.++..+|++++|+..|++ +....|
T Consensus       183 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~-~~~~~~  217 (355)
T cd05804         183 MLRGHNWWHLALFYLERGDYEAALAIYDT-HIAPSA  217 (355)
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHH-Hhcccc
Confidence            22223466799999999999999999999 443444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=3.4e-06  Score=88.02  Aligned_cols=140  Identities=16%  Similarity=0.106  Sum_probs=105.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh----hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA----IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       407 ~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~----~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                      -.-|..|++.|+|..|...|+||++.+. ..+..+.+.    -.....++.+++.||..+++|.+|+.+.++ ++..+|+
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~-~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k-vLe~~~~  289 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLE-YRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK-VLELDPN  289 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhh-ccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH-HHhcCCC
Confidence            4568889999999999999999987641 111111111    112233688999999999999999999999 7779999


Q ss_pred             CchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhhhhhhhhhhccch
Q 008435          483 EPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFS  548 (565)
Q Consensus       483 ~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (565)
                      |.+....-..++..++...  +..|+++++++|+++.+..++-...+-...+.+..++.|.+.|-+++
T Consensus       290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9876443333443444333  89999999999999999988888877778888888999998887765

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.42  E-value=9.1e-07  Score=94.11  Aligned_cols=69  Identities=17%  Similarity=0.237  Sum_probs=65.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA---LILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A---~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      .++.+++.++.+|..+...|++++|+..|++||+++|+++++   |+++|.+|..+|+.++|++++++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999965   999999999999999999999999875

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.41  E-value=2.4e-06  Score=76.10  Aligned_cols=98  Identities=26%  Similarity=0.268  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      +..|+.|..+-..|+.++|+.+|++|++...+.   .+++..+|..+...|++++|+..+++++..     .|++.    
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-----~p~~~----   72 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-----FPDDE----   72 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcc----
Confidence            568999999999999999999999999976554   779999999999999999999999999653     34422    


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      ........++.++...|+++||++.+-+++
T Consensus        73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   73 LNAALRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            111234557889999999999999998833

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.39  E-value=4.9e-06  Score=84.71  Aligned_cols=137  Identities=18%  Similarity=0.239  Sum_probs=107.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +.+..+++|..++..|++.+|+..|..|++.||++..|++..|-+|...|+-..|+.-+.+++++     .|+       
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-----KpD-------  104 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-----KPD-------  104 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-----Ccc-------
Confidence            56778999999999999999999999999999999999999999999999999999999999765     343       


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhH-H----HHHHHHH------------HHHHHHHHh
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG-L----VVLARYV------------ANITFLIFA  510 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~-~----~~La~~l------------~~~l~~Al~  510 (565)
                      +.-|....|.++.++|++++|..-|++ ...-+|.+......+... .    ..+-..+            ++++.+.++
T Consensus       105 F~~ARiQRg~vllK~Gele~A~~DF~~-vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE  183 (504)
T KOG0624|consen  105 FMAARIQRGVVLLKQGELEQAEADFDQ-VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE  183 (504)
T ss_pred             HHHHHHHhchhhhhcccHHHHHHHHHH-HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence            224667789999999999999999999 555677655433322111 0    0011000            788888889


Q ss_pred             cCCCcHH
Q 008435          511 TSPSIIN  517 (565)
Q Consensus       511 l~P~~~~  517 (565)
                      ..|....
T Consensus       184 i~~Wda~  190 (504)
T KOG0624|consen  184 IQPWDAS  190 (504)
T ss_pred             cCcchhH
Confidence            9887554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=2.1e-06  Score=91.79  Aligned_cols=140  Identities=14%  Similarity=0.162  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +++....|..++..|+|.+|+.+|.+||..||+|+..|-+.|.+|...|++.+|+...++++++     +|+       +
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-----~p~-------~  425 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-----DPN-------F  425 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----Cch-------H
Confidence            6677788999999999999999999999999999999999999999999999999999999765     333       3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVS  522 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~  522 (565)
                      ..+|..-|.++....+|++|.+.|++ +...+|++.....+|....-..-...  .+..++ .-.+|+...++.+.
T Consensus       426 ~kgy~RKg~al~~mk~ydkAleay~e-ale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r-~~~dpev~~il~d~  499 (539)
T KOG0548|consen  426 IKAYLRKGAALRAMKEYDKALEAYQE-ALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR-AMADPEVQAILQDP  499 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh-hccCHHHHHHHcCH
Confidence            35788889999999999999999999 77788887765444433321110000  444444 44556666655443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.38  E-value=2.9e-06  Score=77.97  Aligned_cols=92  Identities=22%  Similarity=0.271  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      ...+.+|..+...|++++|+..|+++++..|+.   ..+.+.+|.++...|++++|+..++++.             ...
T Consensus        49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-------------~~~  115 (145)
T PF09976_consen   49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-------------DEA  115 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------------Ccc
Confidence            344555555666666666666666666655443   3455556666666666666666554430             011


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      ....++...|.++...|++++|++.|++
T Consensus       116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  116 FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            1122344456666666666666666655

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=2.9e-06  Score=91.21  Aligned_cols=176  Identities=14%  Similarity=0.099  Sum_probs=117.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      .+..++..|.=++.-|++.+|.++|-+|-.+||.+..||...|..+...|..|+|+.+|.+|-++.     |.-.     
T Consensus       311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-----~G~h-----  380 (611)
T KOG1173|consen  311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-----PGCH-----  380 (611)
T ss_pred             CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-----cCCc-----
Confidence            466688889889999999999999999999999999999999999999999999999999996542     2110     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH-HHHH---HHHHHHHHhc----CCC-----
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL-ARYV---ANITFLIFAT----SPS-----  514 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L-a~~l---~~~l~~Al~l----~P~-----  514 (565)
                        .....+|.=|.+.+.++-|.+.|.+ +...+|.||-....  .+.+.. ...+   ..++++++..    +++     
T Consensus       381 --lP~LYlgmey~~t~n~kLAe~Ff~~-A~ai~P~Dplv~~E--lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~  455 (611)
T KOG1173|consen  381 --LPSLYLGMEYMRTNNLKLAEKFFKQ-ALAIAPSDPLVLHE--LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE  455 (611)
T ss_pred             --chHHHHHHHHHHhccHHHHHHHHHH-HHhcCCCcchhhhh--hhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence              1244577778888888888888888 66678888754321  111111 0111   4555555521    111     


Q ss_pred             -----cHHHHHhhhhhhHHHhhhhh--hhhhhhhhhhccchhHHHHHHHHH
Q 008435          515 -----IINLLTVSNIIDIIYVNCYE--LKKKRFASCFFGFSVLYVMLVAML  558 (565)
Q Consensus       515 -----~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  558 (565)
                           ...+...++++++++..+..  .....+++.|..+|-+|.-+|.-.
T Consensus       456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld  506 (611)
T KOG1173|consen  456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD  506 (611)
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence                 22233444555555444433  222347777777777777666443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.35  E-value=1.6e-05  Score=87.09  Aligned_cols=105  Identities=20%  Similarity=0.120  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~--------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      ..+...+|..+..+|++++|+..+++|++.        .|.-......+|.+|...+++++|+..|++|+.+..-...++
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            355667999999999999999999999998        677777777799999999999999999999988741112222


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      +    +....++.+|+.+|...|+++||..+++++..
T Consensus       279 h----~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~  311 (508)
T KOG1840|consen  279 H----PAVAATLNNLAVLYYKQGKFAEAEEYCERALE  311 (508)
T ss_pred             C----HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence            2    22334678899999999999999999999543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.34  E-value=1.1e-05  Score=93.75  Aligned_cols=140  Identities=13%  Similarity=0.073  Sum_probs=92.2

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+.+.+.|.+...+..+|..+..+|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++++.     +
T Consensus        92 eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----d  166 (822)
T PRK14574         92 ERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER-----D  166 (822)
T ss_pred             HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----C
Confidence            33446677777777777888888888888888888888888888888888888888888888888888888432     3


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHHHHHHHHHHhcCCC
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSPS  514 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l~~~l~~Al~l~P~  514 (565)
                      |.+.        .+..++.++...++..+|++.+++ +...+|++......++.++..++.  ..-..+.++..|+
T Consensus       167 p~~~--------~~l~layL~~~~~~~~~AL~~~ek-ll~~~P~n~e~~~~~~~~l~~~~~--~~~a~~l~~~~p~  231 (822)
T PRK14574        167 PTVQ--------NYMTLSYLNRATDRNYDALQASSE-AVRLAPTSEEVLKNHLEILQRNRI--VEPALRLAKENPN  231 (822)
T ss_pred             cchH--------HHHHHHHHHHhcchHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCC--cHHHHHHHHhCcc
Confidence            3211        112234444556777678888888 555778877543322211111110  3344456666674

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.32  E-value=5.2e-06  Score=90.91  Aligned_cols=175  Identities=14%  Similarity=0.094  Sum_probs=117.3

Q ss_pred             HHHHHHHHCCCCCchHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          374 ALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       374 ~lA~~l~~~g~~~eAi~~l~~AL~~--------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      ..|..+...+++++|+..|++|+.+        +|.-+.++.+||.+|...|+++||..++++|+++..-..-.    ..
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~----~~  321 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA----SH  321 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc----Ch
Confidence            5899999999999999999999973        46668899999999999999999999999999875110001    11


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC----CCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcC
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE----PEEPKSKAHYYDGLVVLARYV---------ANITFLIFATS  512 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~----P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~  512 (565)
                      +.....+..++.++...+++++|+.+++++.....    ++++..    .....++|..+         .+.+++|+++.
T Consensus       322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~----a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL----AKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH----HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            12223466789999999999999999999554433    222211    22234666665         78889988875


Q ss_pred             CC--------cHHHH----------HhhhhhhHHHhhhhhhhh---hhh---hhhhccchhHHHHHHH
Q 008435          513 PS--------IINLL----------TVSNIIDIIYVNCYELKK---KRF---ASCFFGFSVLYVMLVA  556 (565)
Q Consensus       513 P~--------~~~~l----------~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~  556 (565)
                      -.        ....+          +..+++.++++.+.+..+   .-+   ...|-||+.+|.-+|.
T Consensus       398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~  465 (508)
T KOG1840|consen  398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN  465 (508)
T ss_pred             HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence            32        11111          122223344444444332   222   3457888888887663

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.31  E-value=2.5e-06  Score=90.42  Aligned_cols=92  Identities=12%  Similarity=0.066  Sum_probs=78.1

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+.+...+.++..++.+|..+...|++++|+..+++|++++|+++.+|+.+|.++...|++++|+.+|++++++     +
T Consensus        26 ~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~  100 (356)
T PLN03088         26 TQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASL-----A  100 (356)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----C
Confidence            45556667788999999999999999999999999999999999999999999999999999999999999764     5


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHc
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQ  462 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~  462 (565)
                      |+++       .++.+++.|....
T Consensus       101 P~~~-------~~~~~l~~~~~kl  117 (356)
T PLN03088        101 PGDS-------RFTKLIKECDEKI  117 (356)
T ss_pred             CCCH-------HHHHHHHHHHHHH
Confidence            6654       2455566665444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.31  E-value=1.2e-05  Score=73.98  Aligned_cols=97  Identities=20%  Similarity=0.277  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +...+..+......++.+++...+++.++.+|+.   ..+.+.+|.++...|++++|++.|+++++.     .|    ++
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~----d~   81 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----AP----DP   81 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CC----CH
Confidence            4567778888888999999999999999999999   778899999999999999999999999753     12    22


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      .....+...++.++..+|++++|+..++.
T Consensus        82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   82 ELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            33345788899999999999999999977

>TIGR00540 hemY_coli hemY protein

Probab=98.31  E-value=5.7e-05  Score=81.55  Aligned_cols=95  Identities=17%  Similarity=0.147  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a-~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      ...+...|..+.+.|++++|..+++++.+..|++. .+....+.++.+.|++++|.+.+++.++.     +|+++     
T Consensus       118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~-----  187 (409)
T TIGR00540       118 VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM-----APRHK-----  187 (409)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-----
Confidence            44455667777888888888888888888888875 46666688888888888888888888543     45543     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                        .++..++.++...|++++|++.+++.
T Consensus       188 --~~l~ll~~~~~~~~d~~~a~~~l~~l  213 (409)
T TIGR00540       188 --EVLKLAEEAYIRSGAWQALDDIIDNM  213 (409)
T ss_pred             --HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence              35666888888888888888888883

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.29  E-value=1.1e-05  Score=73.44  Aligned_cols=91  Identities=26%  Similarity=0.349  Sum_probs=79.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      ...++.+++..|...++.|++++|++.|+......|..   ..|...+|.+|+..|++++|+..+++-|++     +|++
T Consensus         6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~h   80 (142)
T PF13512_consen    6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTH   80 (142)
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC
Confidence            35689999999999999999999999999999999875   679999999999999999999999999765     5876


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCC
Q 008435          442 PEAIDLLIVASQWSGVACIRQEK  464 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~  464 (565)
                      +. .+   .+++..|.++..+.+
T Consensus        81 p~-vd---Ya~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   81 PN-VD---YAYYMRGLSYYEQDE   99 (142)
T ss_pred             CC-cc---HHHHHHHHHHHHHhh
Confidence            62 22   468889999888765

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.29  E-value=2.8e-06  Score=86.37  Aligned_cols=102  Identities=21%  Similarity=0.095  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      ++-++|..++.+|+|+||++||.+++..+|.|+..+.+.+..|.+..+|+.|+.-.+.|+.++            .....
T Consensus        99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------------~~Y~K  166 (536)
T KOG4648|consen   99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD------------KLYVK  166 (536)
T ss_pred             HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------------HHHHH
Confidence            456789999999999999999999999999999999999999999999999999999998653            33446


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                      ||-..|.+...+|+..||.+-+|+ +++++|++-.
T Consensus       167 AYSRR~~AR~~Lg~~~EAKkD~E~-vL~LEP~~~E  200 (536)
T KOG4648|consen  167 AYSRRMQARESLGNNMEAKKDCET-VLALEPKNIE  200 (536)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhHHH-HHhhCcccHH
Confidence            788899999999999999999999 7779998654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.27  E-value=1.2e-05  Score=84.26  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL  408 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~  408 (565)
                      +..+..|..+...|++++|.+.++++++.+|++..++..
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~   82 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL   82 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            334445555555556666666666666555555554443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11906 transcriptional regulator; Provisional

Probab=98.27  E-value=5.8e-06  Score=88.20  Aligned_cols=110  Identities=17%  Similarity=0.171  Sum_probs=92.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHC---C------CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435          363 SVENLTPKELIALSVKFLSK---G------DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL  433 (565)
Q Consensus       363 ~~~~~~~~~l~~lA~~l~~~---g------~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~  433 (565)
                      ..++..+..++.+|..+...   |      +..+|.++.++|+++||+|+.|+..+|.+....++++.|...|+||+.  
T Consensus       289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--  366 (458)
T PRK11906        289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--  366 (458)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--
Confidence            45556688888888877653   2      344689999999999999999999999999999999999999999954  


Q ss_pred             hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       434 ~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                         ++|+.+       .+++..|..+...|+.++|++++++ +.+++|....
T Consensus       367 ---L~Pn~A-------~~~~~~~~~~~~~G~~~~a~~~i~~-alrLsP~~~~  407 (458)
T PRK11906        367 ---HSTDIA-------SLYYYRALVHFHNEKIEEARICIDK-SLQLEPRRRK  407 (458)
T ss_pred             ---cCCccH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HhccCchhhH
Confidence               467654       4788899999999999999999999 7788887653

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.27  E-value=9.1e-06  Score=76.42  Aligned_cols=119  Identities=19%  Similarity=0.101  Sum_probs=75.9

Q ss_pred             CchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhh--hhcCCCCChhhhhHHHHHHHHHHHHHH
Q 008435          386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLL---EEAVEYLECAISKL--FLAGHPTEPEAIDLLIVASQWSGVACI  460 (565)
Q Consensus       386 ~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~---~eA~~~~~rAl~l~--~l~~~P~~~~~~~~~~~a~~~lG~a~~  460 (565)
                      +.|.+.++.....||.|+++++.-|.++..+.++   .|+.+.++.|+++.  .+..+|+..       .+++.+|++|.
T Consensus         8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h-------dAlw~lGnA~t   80 (186)
T PF06552_consen    8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH-------DALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH-------HHHHHHHHHHH
Confidence            4678889999999999999999999998877544   55666666666654  244566533       46778899885


Q ss_pred             Hc----CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHHHHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhh
Q 008435          461 RQ----EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSPSIINLLTVSNIIDIIYVNCYELK  536 (565)
Q Consensus       461 ~~----g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~  536 (565)
                      .+    .+..+|.++|++ +.                         ++|++|+..+|++..+.+.++-.....+.+.+..
T Consensus        81 s~A~l~~d~~~A~~~F~k-A~-------------------------~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~  134 (186)
T PF06552_consen   81 SLAFLTPDTAEAEEYFEK-AT-------------------------EYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIH  134 (186)
T ss_dssp             HHHHH---HHHHHHHHHH-HH-------------------------HHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHhhcCChHHHHHHHHH-HH-------------------------HHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHH
Confidence            53    344556666666 22                         4467777777777777776665555555444443


Q ss_pred             h
Q 008435          537 K  537 (565)
Q Consensus       537 ~  537 (565)
                      +
T Consensus       135 ~  135 (186)
T PF06552_consen  135 K  135 (186)
T ss_dssp             H
T ss_pred             H
Confidence            3

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.26  E-value=7.1e-06  Score=77.65  Aligned_cols=78  Identities=13%  Similarity=0.089  Sum_probs=62.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 008435          399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL  478 (565)
Q Consensus       399 dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~  478 (565)
                      ++..+.+++.+|..+...|++++|+++|+++++..     |+..    ....++..+|.++...|++++|++++++ +..
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~  100 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPN----DRSYILYNMGIIYASNGEHDKALEYYHQ-ALE  100 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccc----hHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Confidence            45678889999999999999999999999997642     2211    1124678899999999999999999999 666


Q ss_pred             cCCCCchh
Q 008435          479 KEPEEPKS  486 (565)
Q Consensus       479 l~P~~~~~  486 (565)
                      ..|+++..
T Consensus       101 ~~p~~~~~  108 (172)
T PRK02603        101 LNPKQPSA  108 (172)
T ss_pred             hCcccHHH
Confidence            77777643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.25  E-value=4.8e-05  Score=77.64  Aligned_cols=154  Identities=14%  Similarity=0.146  Sum_probs=115.1

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      -..+..++.+-..+|..|..++..|+-.-|+.-+.+.|++.|++..|....|.++..+|++++|+.-|.+.+..     +
T Consensus        62 HaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~-----~  136 (504)
T KOG0624|consen   62 HAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH-----E  136 (504)
T ss_pred             HHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc-----C
Confidence            34566667777889999999999999999999999999999999999999999999999999999999999654     3


Q ss_pred             CCChhhh--------------------------------h---HH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          439 PTEPEAI--------------------------------D---LL-------IVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       439 P~~~~~~--------------------------------~---~~-------~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      |.+....                                +   ..       ..-+...+.||...|+...||.-++. +
T Consensus       137 ~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~-a  215 (504)
T KOG0624|consen  137 PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQ-A  215 (504)
T ss_pred             CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHH-H
Confidence            3211000                                0   00       00123367788899999999999988 5


Q ss_pred             hccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHH
Q 008435          477 NLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINL  518 (565)
Q Consensus       477 ~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~  518 (565)
                      ..+..++..........++.+|...  ....+..+++||+++.+
T Consensus       216 skLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C  259 (504)
T KOG0624|consen  216 SKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC  259 (504)
T ss_pred             HhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence            5566566654333333444455444  78889999999997653

>TIGR00540 hemY_coli hemY protein

Probab=98.24  E-value=2.1e-05  Score=84.93  Aligned_cols=184  Identities=8%  Similarity=-0.078  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh---------
Q 008435          372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP---------  442 (565)
Q Consensus       372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~---------  442 (565)
                      ....+..+.+.|++++|...+++.++.+|+++.++..+|.++.+.|++++|++.+++..+..  ..++.+.         
T Consensus       156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~~~~~~~~~l~~~a~~  233 (409)
T TIGR00540       156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--LFDDEEFADLEQKAEI  233 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence            44458889999999999999999999999999999999999999999999999999887541  0011000         


Q ss_pred             -------------------h-hhh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHH-
Q 008435          443 -------------------E-AID---LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA-  498 (565)
Q Consensus       443 -------------------~-~~~---~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La-  498 (565)
                                         + .+.   .....+..++..+...|++++|.+.+++ +....|++.............+. 
T Consensus       234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~-~l~~~pd~~~~~~~~l~~~~~l~~  312 (409)
T TIGR00540       234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFD-GLKKLGDDRAISLPLCLPIPRLKP  312 (409)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHH-HHhhCCCcccchhHHHHHhhhcCC
Confidence                               0 000   0123456688899999999999999999 66677877632100111111110 


Q ss_pred             ---HHHHHHHHHHHhcCCCcH--HHHHhhhh-------hhHHHhhhhh--hh---hhhhhhhhccchhHHHHHHHHHhh
Q 008435          499 ---RYVANITFLIFATSPSII--NLLTVSNI-------IDIIYVNCYE--LK---KKRFASCFFGFSVLYVMLVAMLKL  560 (565)
Q Consensus       499 ---~~l~~~l~~Al~l~P~~~--~~l~~~~~-------~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~  560 (565)
                         ....+.++++++.+|+..  .++.....       .+.+.+ +.+  ..   .+..+. +..+|.++..+|+-.+-
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~-~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A  389 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAAD-AFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA  389 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHH-HHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence               111788899999999888  54433222       222211 222  11   122333 55888888887765443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.24  E-value=1.5e-06  Score=68.63  Aligned_cols=54  Identities=39%  Similarity=0.607  Sum_probs=49.9

Q ss_pred             HHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       379 l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +++.|++++|+..|+++++.+|++.++++.+|.++.+.|++++|.+.+++++..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999653

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.23  E-value=4.3e-05  Score=86.78  Aligned_cols=145  Identities=17%  Similarity=0.079  Sum_probs=108.9

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCC---CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 008435          359 QLKISVENLTPKELIALSVKFLSKG---DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFL  435 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g---~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l  435 (565)
                      .|.+..+|.+...++.+|...+...   .+..+..++.+|-..+|+|+.+...|+.-++..|+|+.+...++.|+...  
T Consensus       223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t--  300 (1018)
T KOG2002|consen  223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT--  300 (1018)
T ss_pred             HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh--
Confidence            4555566677888888888776544   56678999999999999999999999999999999999999999886531  


Q ss_pred             cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHH
Q 008435          436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITF  506 (565)
Q Consensus       436 ~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~  506 (565)
                             .......+.+||+|.+|..+|+|++|..+|.+ +...+|++.      ...++.+|+.+         ..+++
T Consensus       301 -------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~-s~k~~~d~~------~l~~~GlgQm~i~~~dle~s~~~fE  366 (1018)
T KOG2002|consen  301 -------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYME-SLKADNDNF------VLPLVGLGQMYIKRGDLEESKFCFE  366 (1018)
T ss_pred             -------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH-HHccCCCCc------cccccchhHHHHHhchHHHHHHHHH
Confidence                   11223345788999999999999999999988 555565551      12233555554         78899


Q ss_pred             HHHhcCCCcHHHH
Q 008435          507 LIFATSPSIINLL  519 (565)
Q Consensus       507 ~Al~l~P~~~~~l  519 (565)
                      +.+..+|+.-+.+
T Consensus       367 kv~k~~p~~~etm  379 (1018)
T KOG2002|consen  367 KVLKQLPNNYETM  379 (1018)
T ss_pred             HHHHhCcchHHHH
Confidence            9999999876544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.22  E-value=1.6e-05  Score=85.55  Aligned_cols=140  Identities=9%  Similarity=0.004  Sum_probs=96.1

Q ss_pred             HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh----------
Q 008435          374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE----------  443 (565)
Q Consensus       374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~----------  443 (565)
                      ..+..+...|++++|++.++++++.+|+++.++..++.+|.+.|++++|++.+.+..+..  ..++.+..          
T Consensus       158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~--~~~~~~~~~l~~~a~~~l  235 (398)
T PRK10747        158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH--VGDEEHRAMLEQQAWIGL  235 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHH
Confidence            458888999999999999999999999999999999999999999999998888776432  00110000          


Q ss_pred             ----------------------hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH
Q 008435          444 ----------------------AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV  501 (565)
Q Consensus       444 ----------------------~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l  501 (565)
                                            .......++..++..+...|+.++|.+.+++ +...+ .|+.....|  +.+..+...
T Consensus       236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~-~l~~~-~~~~l~~l~--~~l~~~~~~  311 (398)
T PRK10747        236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILD-GLKRQ-YDERLVLLI--PRLKTNNPE  311 (398)
T ss_pred             HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcC-CCHHHHHHH--hhccCCChH
Confidence                                  0000112455678889999999999999999 44333 344221111  100111111


Q ss_pred             --HHHHHHHHhcCCCcHHHH
Q 008435          502 --ANITFLIFATSPSIINLL  519 (565)
Q Consensus       502 --~~~l~~Al~l~P~~~~~l  519 (565)
                        .+.+++.++.+|+..+.+
T Consensus       312 ~al~~~e~~lk~~P~~~~l~  331 (398)
T PRK10747        312 QLEKVLRQQIKQHGDTPLLW  331 (398)
T ss_pred             HHHHHHHHHHhhCCCCHHHH
Confidence              677888888888876644

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.21  E-value=2.1e-05  Score=68.34  Aligned_cols=102  Identities=20%  Similarity=0.212  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                      +++++.+|..+...|++++|++.|+++++.     +|+++    ....+++.+|.++...|++++|+..|++ +...+|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~p~   71 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKST----YAPNAHYWLGEAYYAQGKYADAAKAFLA-VVKKYPK   71 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcc----ccHHHHHHHHHHHHhhccHHHHHHHHHH-HHHHCCC
Confidence            468899999999999999999999999754     34322    1124678899999999999999999999 6667777


Q ss_pred             CchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHH
Q 008435          483 EPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINL  518 (565)
Q Consensus       483 ~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~  518 (565)
                      ++...    .++..+|..+         .++++++++..|+....
T Consensus        72 ~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        72 SPKAP----DALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             CCccc----HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            64221    1222344333         78888888888886654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=8.8e-06  Score=87.21  Aligned_cols=107  Identities=22%  Similarity=0.183  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ++++-+.|...++.|+++.|+.+|..|+.+||.|.--|-+...+|...|+|++|++-..+.+++     +|+   +    
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l-----~p~---w----   69 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL-----NPD---W----   69 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc-----CCc---h----
Confidence            4567789999999999999999999999999999999999999999999999999999999764     343   1    


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                      ..+|...|.++.-+|+|++|+..|++ .+..+|.+.....
T Consensus        70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~-GL~~d~~n~~L~~  108 (539)
T KOG0548|consen   70 AKGYSRKGAALFGLGDYEEAILAYSE-GLEKDPSNKQLKT  108 (539)
T ss_pred             hhHHHHhHHHHHhcccHHHHHHHHHH-HhhcCCchHHHHH
Confidence            24677799999999999999999999 6668888875433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.18  E-value=8.9e-06  Score=82.40  Aligned_cols=179  Identities=16%  Similarity=0.157  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ++.+..++..+.+-++.+.|+..+.+.++..|.++.-+..++.++...++.++|.++|++++++     +|.+.|     
T Consensus       256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-----~~~nvE-----  325 (478)
T KOG1129|consen  256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-----HPINVE-----  325 (478)
T ss_pred             hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-----CCccce-----
Confidence            6778888999999999999999999999999999999999999999999999999999999553     465443     


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH----HHHHHHHHhcC--CCc-HHHHHh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV----ANITFLIFATS--PSI-INLLTV  521 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l----~~~l~~Al~l~--P~~-~~~l~~  521 (565)
                        +..-+|.-|+.-|+.|-|..+|+| +....-.+|+.  +...+++++....    ...+++|+..-  |+. .+.|=+
T Consensus       326 --aiAcia~~yfY~~~PE~AlryYRR-iLqmG~~speL--f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYN  400 (478)
T KOG1129|consen  326 --AIACIAVGYFYDNNPEMALRYYRR-ILQMGAQSPEL--FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYN  400 (478)
T ss_pred             --eeeeeeeccccCCChHHHHHHHHH-HHHhcCCChHH--HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhc
Confidence              233467778899999999999999 55565566643  2222333222111    67888888754  332 234422


Q ss_pred             h----------hhhhHHHhhhhhhhhhhhhhhhccchhHHHHHHHHHhhhhc
Q 008435          522 S----------NIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRSI  563 (565)
Q Consensus       522 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (565)
                      +          +.+..++..+.. -+..+.++|.||||+-...|+.+.-||.
T Consensus       401 lg~vaV~iGD~nlA~rcfrlaL~-~d~~h~ealnNLavL~~r~G~i~~Arsl  451 (478)
T KOG1129|consen  401 LGFVAVTIGDFNLAKRCFRLALT-SDAQHGEALNNLAVLAARSGDILGARSL  451 (478)
T ss_pred             cceeEEeccchHHHHHHHHHHhc-cCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence            2          222233333322 2366999999999999999988877764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.17  E-value=3.8e-05  Score=82.63  Aligned_cols=95  Identities=19%  Similarity=0.190  Sum_probs=77.5

Q ss_pred             HHHHHHH-HHHHHHCCCCCchHHHHHHHHhhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          369 PKELIAL-SVKFLSKGDKERPIPLLQLALNKEPDNINAL-ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       369 ~~~l~~l-A~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~-~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      +..++.+ +....+.|++++|..++++|.+.+|++..+. ...+.++...|++++|++.++++++     .+|+++    
T Consensus       117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~-----~~P~~~----  187 (398)
T PRK10747        117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLE-----VAPRHP----  187 (398)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCCCH----
Confidence            4444555 5555899999999999999999999996544 4459999999999999999999954     356655    


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                         .++..++.+|...|++++|++.++++
T Consensus       188 ---~al~ll~~~~~~~gdw~~a~~~l~~l  213 (398)
T PRK10747        188 ---EVLRLAEQAYIRTGAWSSLLDILPSM  213 (398)
T ss_pred             ---HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence               35667899999999999999888873

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.17  E-value=8.7e-06  Score=90.29  Aligned_cols=133  Identities=18%  Similarity=0.042  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      ......|..+...++.++|.-++.+|-..+|..+..|+..|.++..+|+++||.++|.-|+     ..||++.       
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al-----~ldP~hv-------  718 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL-----ALDPDHV-------  718 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH-----hcCCCCc-------
Confidence            3445566667778888889999999999999999999999999999999999999999994     4567654       


Q ss_pred             HHHHHHHHHHHHcCCHHHHHH--HHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCc
Q 008435          450 VASQWSGVACIRQEKWEEGIA--HLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSI  515 (565)
Q Consensus       450 ~a~~~lG~a~~~~g~~~eAi~--~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~  515 (565)
                      .....+|.++.+.|+..-|..  .+.. +.+.+|.+++.|.+....+-.+|+..  .++|..+++++++.
T Consensus       719 ~s~~Ala~~lle~G~~~la~~~~~L~d-alr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  719 PSMTALAELLLELGSPRLAEKRSLLSD-ALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence            123447888888888777766  7877 77789999976443333333444444  78889888887754

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=1.4e-05  Score=83.16  Aligned_cols=136  Identities=15%  Similarity=0.119  Sum_probs=106.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +++..+--+..+...+++++|+.+-+++|+.||++.+++...|.++.+.|+.++|+-+|+.|..+.     |.+      
T Consensus       299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-----p~r------  367 (564)
T KOG1174|consen  299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-----PYR------  367 (564)
T ss_pred             chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-----hhh------
Confidence            466677888888999999999999999999999999999999999999999999999999996542     322      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHH-HHH----------HHHHHHHHhcCCCcH
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA-RYV----------ANITFLIFATSPSII  516 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La-~~l----------~~~l~~Al~l~P~~~  516 (565)
                       .+.|.++-.+|...|++.||...-.. +...-|++++..       ..+| .+.          .++++++++++|.+.
T Consensus       368 -L~~Y~GL~hsYLA~~~~kEA~~~An~-~~~~~~~sA~~L-------tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~  438 (564)
T KOG1174|consen  368 -LEIYRGLFHSYLAQKRFKEANALANW-TIRLFQNSARSL-------TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT  438 (564)
T ss_pred             -HHHHHHHHHHHHhhchHHHHHHHHHH-HHHHhhcchhhh-------hhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence             24567777889999999999988877 444555665432       2333 111          688999999999987


Q ss_pred             HHHHhhh
Q 008435          517 NLLTVSN  523 (565)
Q Consensus       517 ~~l~~~~  523 (565)
                      .+.....
T Consensus       439 ~AV~~~A  445 (564)
T KOG1174|consen  439 PAVNLIA  445 (564)
T ss_pred             HHHHHHH
Confidence            6554443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.16  E-value=8.6e-06  Score=66.28  Aligned_cols=72  Identities=19%  Similarity=0.145  Sum_probs=56.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       400 P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      |+-+.++..+|.+|...|++++|+++|++++++. -...+    +......++.++|.++..+|++++|+++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGD----DHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTT----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3446789999999999999999999999998763 11111    122234578899999999999999999999943

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.15  E-value=7.6e-06  Score=87.20  Aligned_cols=71  Identities=17%  Similarity=0.195  Sum_probs=61.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       398 ~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      .+|+++.+|+++|.+|...|++++|+.+|++|+++     +|++++.    ..+|+++|.+|..+|++++|+++|+++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA----~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEA----QAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999764     5764411    13589999999999999999999999444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.14  E-value=1.2e-05  Score=91.19  Aligned_cols=83  Identities=18%  Similarity=0.172  Sum_probs=45.0

Q ss_pred             HCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHH
Q 008435          381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI  460 (565)
Q Consensus       381 ~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~  460 (565)
                      +.+.+++|+++|.++|+.||.|..|-..+|.++...|++.+|.+.|.++.+..            .....+|.++|.||.
T Consensus       624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~------------~~~~dv~lNlah~~~  691 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT------------SDFEDVWLNLAHCYV  691 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH------------hhCCceeeeHHHHHH
Confidence            34455556666666666666666666666666666666666666666553321            001123445555555


Q ss_pred             HcCCHHHHHHHHHHH
Q 008435          461 RQEKWEEGIAHLERI  475 (565)
Q Consensus       461 ~~g~~~eAi~~lera  475 (565)
                      .+|+|-.|++.|+..
T Consensus       692 e~~qy~~AIqmYe~~  706 (1018)
T KOG2002|consen  692 EQGQYRLAIQMYENC  706 (1018)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555555553

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.14  E-value=1.2e-05  Score=89.19  Aligned_cols=112  Identities=11%  Similarity=-0.049  Sum_probs=87.7

Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHCC--------CCCchHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          360 LKISVENLTPKELIALSVKFLSKG--------DKERPIPLLQLALN--KEPDNINALILMGQTQLQKGLLEEAVEYLECA  429 (565)
Q Consensus       360 ~~~~~~~~~~~~l~~lA~~l~~~g--------~~~eAi~~l~~AL~--~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA  429 (565)
                      +.+..+|.++..+..++..+....        +.+++.+..++++.  .+|.++.+|..+|..+...|++++|..++++|
T Consensus       367 ~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA  446 (517)
T PRK10153        367 EILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKA  446 (517)
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            455555666777777776664432        22345566666666  38999999999999999999999999999999


Q ss_pred             HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       430 l~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                      +++     +|.        ..+|..+|.++...|++++|++.|++ +.+++|.+|.
T Consensus       447 l~L-----~ps--------~~a~~~lG~~~~~~G~~~eA~~~~~~-A~~L~P~~pt  488 (517)
T PRK10153        447 IDL-----EMS--------WLNYVLLGKVYELKGDNRLAADAYST-AFNLRPGENT  488 (517)
T ss_pred             HHc-----CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCCch
Confidence            764     332        24788899999999999999999999 7889999985

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.14  E-value=4.6e-06  Score=66.85  Aligned_cols=57  Identities=30%  Similarity=0.394  Sum_probs=54.1

Q ss_pred             HHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       376 A~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      ...+.+.+++++|+..++++++.+|+++.+|..+|.++...|++++|.+.++++++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999765

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=2.4e-05  Score=79.06  Aligned_cols=123  Identities=15%  Similarity=0.088  Sum_probs=86.3

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH---cCCH
Q 008435          389 IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR---QEKW  465 (565)
Q Consensus       389 i~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~---~g~~  465 (565)
                      +.-++.-|+.||+|++-|..||.+|+..|+++.|...|++|+++     .|+++       ..+..+|.++..   ...-
T Consensus       142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~-------~~~~g~aeaL~~~a~~~~t  209 (287)
T COG4235         142 IARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNP-------EILLGLAEALYYQAGQQMT  209 (287)
T ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHHhcCCccc
Confidence            45566779999999999999999999999999999999999765     46655       234446666543   3446


Q ss_pred             HHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhh
Q 008435          466 EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNI  524 (565)
Q Consensus       466 ~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~  524 (565)
                      .++.+.|++ +..++|.|......+......-++.-  +..++..++..|....-..-+++
T Consensus       210 a~a~~ll~~-al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         210 AKARALLRQ-ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHHH-HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            789999999 77799998865332211111111111  77888999998876554444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.12  E-value=3.5e-05  Score=61.84  Aligned_cols=96  Identities=23%  Similarity=0.269  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       405 A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      +++.+|.++...|++++|++.++++++.     .|.+.       .++..+|.++...|++++|++.+++ +....|.++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNA-------DAYYNLAAAYYKLGKYEEALEDYEK-ALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCcch
Confidence            6789999999999999999999999653     34322       4577899999999999999999999 655777776


Q ss_pred             hhhhhhhhHHHHHHHHH--HHHHHHHHhcCC
Q 008435          485 KSKAHYYDGLVVLARYV--ANITFLIFATSP  513 (565)
Q Consensus       485 ~~~~~~~~~~~~La~~l--~~~l~~Al~l~P  513 (565)
                      .........+...+...  .+.++++++.+|
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            43222211221222211  556666666665

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.11  E-value=7.4e-05  Score=70.27  Aligned_cols=95  Identities=11%  Similarity=-0.031  Sum_probs=74.2

Q ss_pred             CCCCCchHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008435          382 KGDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC  459 (565)
Q Consensus       382 ~g~~~eAi~~l~~AL~~dP~~--a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~  459 (565)
                      .+++..+.+.+.+.++.++.+  +.+|+.+|.++...|++++|+.+|++|+.+.     |+.    .....++.++|.++
T Consensus        12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~----~~~~~~~~~lg~~~   82 (168)
T CHL00033         12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDP----YDRSYILYNIGLIH   82 (168)
T ss_pred             ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccc----hhhHHHHHHHHHHH
Confidence            345667777776666777766  7778999999999999999999999997642     221    11224788999999


Q ss_pred             HHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          460 IRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       460 ~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      ...|++++|++.+++ +...+|.+...
T Consensus        83 ~~~g~~~eA~~~~~~-Al~~~~~~~~~  108 (168)
T CHL00033         83 TSNGEHTKALEYYFQ-ALERNPFLPQA  108 (168)
T ss_pred             HHcCCHHHHHHHHHH-HHHhCcCcHHH
Confidence            999999999999999 66677777644

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.5e-05  Score=83.10  Aligned_cols=141  Identities=13%  Similarity=0.116  Sum_probs=105.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN------------ALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~------------A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +..+.+.++..|..++-.++.+.|+.+|+++|.+||++-.            .+-.-|+-.++.|++.+|.++|..||. 
T Consensus       199 d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~-  277 (486)
T KOG0550|consen  199 DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN-  277 (486)
T ss_pred             ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc-
Confidence            3456888999999999999999999999999999999854            577788889999999999999999965 


Q ss_pred             hhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHh
Q 008435          433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFA  510 (565)
Q Consensus       433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~  510 (565)
                          .+|++.   .....-|.+.+.+..++|+..||+.-.+. +..++|..-+.......+...+...-  ++.++++++
T Consensus       278 ----idP~n~---~~naklY~nra~v~~rLgrl~eaisdc~~-Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  278 ----IDPSNK---KTNAKLYGNRALVNIRLGRLREAISDCNE-ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             ----CCcccc---chhHHHHHHhHhhhcccCCchhhhhhhhh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                457643   22334577788889999999999999999 55566554433222222222222222  677888887


Q ss_pred             cCCC
Q 008435          511 TSPS  514 (565)
Q Consensus       511 l~P~  514 (565)
                      ..-+
T Consensus       350 ~~~s  353 (486)
T KOG0550|consen  350 LEKD  353 (486)
T ss_pred             hccc
Confidence            7654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.09  E-value=4.2e-05  Score=88.51  Aligned_cols=129  Identities=16%  Similarity=0.106  Sum_probs=99.6

Q ss_pred             chhhhcCCCCCCC---HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          356 PAKQLKISVENLT---PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       356 ~~~~~~~~~~~~~---~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      .++..|....|.+   .+++.+++..+...+++++|+..++.+++..|+...+|+.+|.++.+.+++++|.-.  +++..
T Consensus        15 ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~   92 (906)
T PRK14720         15 EEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS   92 (906)
T ss_pred             hhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence            3455565555554   467788888888999999999999999999999999999999999999999888776  66543


Q ss_pred             hhhcCCCCChhhhhH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhh
Q 008435          433 LFLAGHPTEPEAIDL----------LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHY  490 (565)
Q Consensus       433 ~~l~~~P~~~~~~~~----------~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~  490 (565)
                      .  ..+. +......          ...|++.+|.||.++|+.++|.+.|++ +...+|+|+.+..+|
T Consensus        93 ~--~~~~-~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer-~L~~D~~n~~aLNn~  156 (906)
T PRK14720         93 F--SQNL-KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER-LVKADRDNPEIVKKL  156 (906)
T ss_pred             c--cccc-chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH-HHhcCcccHHHHHHH
Confidence            2  1111 0111111          124888999999999999999999999 777899999766544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=0.00011  Score=76.79  Aligned_cols=154  Identities=14%  Similarity=0.088  Sum_probs=113.7

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------
Q 008435          361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL-------  433 (565)
Q Consensus       361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~-------  433 (565)
                      .|+.++-+.+.+...|..+.+.|+.++|+-.|+.|..+.|..-+.|-.|=.+|...|++.||....+.+++..       
T Consensus       326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L  405 (564)
T KOG1174|consen  326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL  405 (564)
T ss_pred             HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh
Confidence            4555666788999999999999999999999999999999999999999999999999999999888887653       


Q ss_pred             hhc------CCCCChhhh-----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHH
Q 008435          434 FLA------GHPTEPEAI-----------DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV  496 (565)
Q Consensus       434 ~l~------~~P~~~~~~-----------~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~  496 (565)
                      .+.      .+|.--+..           +....|...++..+...|++++++..+++ .....|++. .+.       -
T Consensus       406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~-~L~~~~D~~-LH~-------~  476 (564)
T KOG1174|consen  406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK-HLIIFPDVN-LHN-------H  476 (564)
T ss_pred             hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH-HHhhccccH-HHH-------H
Confidence            011      112100000           01112445578888999999999999999 443444432 122       3


Q ss_pred             HHHHH---------HHHHHHHHhcCCCcHHHHHhhh
Q 008435          497 LARYV---------ANITFLIFATSPSIINLLTVSN  523 (565)
Q Consensus       497 La~~l---------~~~l~~Al~l~P~~~~~l~~~~  523 (565)
                      ||+++         .++|..|+++||+....+++..
T Consensus       477 Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~  512 (564)
T KOG1174|consen  477 LGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR  512 (564)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            34333         7899999999999887665553

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.04  E-value=4.5e-05  Score=86.65  Aligned_cols=165  Identities=10%  Similarity=-0.053  Sum_probs=102.6

Q ss_pred             CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh----------------
Q 008435          382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI----------------  445 (565)
Q Consensus       382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~----------------  445 (565)
                      +++.+.|...|-+++++|++.+.+|..||.+|..--+...|..+|++|-+     +|+.+++..                
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe-----LDatdaeaaaa~adtyae~~~we~a  545 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE-----LDATDAEAAAASADTYAEESTWEEA  545 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCchhhhhHHHHHHHhhccccHHHH
Confidence            34566666666777777777777777777776666666667777777633     333322110                


Q ss_pred             -------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HH
Q 008435          446 -------------DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------AN  503 (565)
Q Consensus       446 -------------~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~  503 (565)
                                   ..-...|..+|..|.+.+++..|+.+|+. +.+.+|.|-..+.       .+|..|         .+
T Consensus       546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs-ALR~dPkD~n~W~-------gLGeAY~~sGry~~AlK  617 (1238)
T KOG1127|consen  546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS-ALRTDPKDYNLWL-------GLGEAYPESGRYSHALK  617 (1238)
T ss_pred             HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH-HhcCCchhHHHHH-------HHHHHHHhcCceehHHH
Confidence                         00011344588899999999999999998 7778888765433       666666         78


Q ss_pred             HHHHHHhcCCCcHH-----H--HHhhhhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHHHHHh
Q 008435          504 ITFLIFATSPSIIN-----L--LTVSNIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       504 ~l~~Al~l~P~~~~-----~--l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                      .+.+|..++|...-     +  .....+...+++......  +.-+.-+-.|++.++.|.....-
T Consensus       618 vF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~  682 (1238)
T KOG1127|consen  618 VFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSA  682 (1238)
T ss_pred             hhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            99999999997432     1  122233434444332221  22255677788888877655443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.02  E-value=5.1e-06  Score=56.94  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=32.0

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008435          391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVE  424 (565)
Q Consensus       391 ~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~  424 (565)
                      +|++||+++|+|+.+|+.+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4799999999999999999999999999999963

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.00  E-value=9.7e-05  Score=74.95  Aligned_cols=106  Identities=13%  Similarity=0.130  Sum_probs=79.7

Q ss_pred             CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 008435          400 PDNINALILMGQTQ-LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL  478 (565)
Q Consensus       400 P~~a~A~~~LG~~~-~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~  478 (565)
                      ..+...+|..|..+ ...|++++|+..|++.++.     .|++.    ....+++|+|.+|+..|++++|+..|++ +..
T Consensus       139 ~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~-vv~  208 (263)
T PRK10803        139 SGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDST----YQPNANYWLGQLNYNKGKKDDAAYYFAS-VVK  208 (263)
T ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Confidence            33567778888876 5679999999999999765     35432    2235899999999999999999999999 555


Q ss_pred             cCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435          479 KEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL  519 (565)
Q Consensus       479 l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l  519 (565)
                      ..|+++..    .+++..+|.++         .+.|++.++..|+...+-
T Consensus       209 ~yP~s~~~----~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        209 NYPKSPKA----ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HCCCCcch----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            77887743    33444555544         788888888888866543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=0.00022  Score=70.40  Aligned_cols=113  Identities=18%  Similarity=0.065  Sum_probs=87.9

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+.+..++++...+-..-.....+|+.-+|++.+...++..++|.+||..++.+|...|+|+.|.-||++.+     ..+
T Consensus       110 ~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l-----l~~  184 (289)
T KOG3060|consen  110 ESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL-----LIQ  184 (289)
T ss_pred             HHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-----HcC
Confidence            445555566666666666667788999999999999999999999999999999999999999999999994     457


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhccCCCCc
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQE---KWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g---~~~eAi~~leraa~~l~P~~~  484 (565)
                      |.++.       -+..+|..++-+|   +++-|.++|++ +..++|.+-
T Consensus       185 P~n~l-------~f~rlae~~Yt~gg~eN~~~arkyy~~-alkl~~~~~  225 (289)
T KOG3060|consen  185 PFNPL-------YFQRLAEVLYTQGGAENLELARKYYER-ALKLNPKNL  225 (289)
T ss_pred             CCcHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHhChHhH
Confidence            77652       2333555554444   56779999999 666777554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.00012  Score=76.76  Aligned_cols=105  Identities=12%  Similarity=0.096  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAISKLFL  435 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---------------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l  435 (565)
                      ..-+.|..+++.|++..|...|++|+..=...               ..+|.+++.++...++|.+|+++..+++++   
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---  286 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---  286 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence            34567888999999999999999998743311               347899999999999999999999999654   


Q ss_pred             cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       436 ~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                        +|+|.       .|+|..|.++..+|+|+.|+..|++ +..++|+|..+..
T Consensus       287 --~~~N~-------KALyRrG~A~l~~~e~~~A~~df~k-a~k~~P~Nka~~~  329 (397)
T KOG0543|consen  287 --DPNNV-------KALYRRGQALLALGEYDLARDDFQK-ALKLEPSNKAARA  329 (397)
T ss_pred             --CCCch-------hHHHHHHHHHHhhccHHHHHHHHHH-HHHhCCCcHHHHH
Confidence              56654       5788899999999999999999999 7779999975543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.94  E-value=6.7e-05  Score=72.33  Aligned_cols=105  Identities=20%  Similarity=0.182  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +.-+++.|..+-+.|-.+-|.--|.++|.+.|+-+++++.+|.-+...|+++.|.+.|...++     +||.+.      
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E-----LDp~y~------  133 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-----LDPTYN------  133 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc-----cCCcch------
Confidence            455788888888888888899999999999999999999999999999999999999999955     456532      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                       .++.+.|.++..-|++.-|.+-+.+ --+.+|+||-.
T Consensus       134 -Ya~lNRgi~~YY~gR~~LAq~d~~~-fYQ~D~~DPfR  169 (297)
T COG4785         134 -YAHLNRGIALYYGGRYKLAQDDLLA-FYQDDPNDPFR  169 (297)
T ss_pred             -HHHhccceeeeecCchHhhHHHHHH-HHhcCCCChHH
Confidence             4677899999999999999999988 44578999854

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.92  E-value=0.00013  Score=79.82  Aligned_cols=65  Identities=23%  Similarity=0.153  Sum_probs=58.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      ++..++.-+...-..++.++|+++++++|+..|++...|..+|+++.+.++.+.|.+.|...+++
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~  714 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK  714 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence            45667777777777899999999999999999999999999999999999999999999998765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=0.00012  Score=76.43  Aligned_cols=138  Identities=13%  Similarity=0.082  Sum_probs=104.8

Q ss_pred             HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh-----H
Q 008435          373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID-----L  447 (565)
Q Consensus       373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~-----~  447 (565)
                      +..+..+...|++++|+..--..+++|+.+.++++..|.+++..++.+.|+.+|++++.     .+|+..+.-.     .
T Consensus       173 ~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~k  247 (486)
T KOG0550|consen  173 LLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR-----LDPDHQKSKSASMMPK  247 (486)
T ss_pred             HhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhHH
Confidence            34566677789999999999999999999999999999999999999999999999965     4564221110     1


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHH
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINL  518 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~  518 (565)
                      ....+-.-|+-.++.|++.+|.+.|.. ++..+|++.+.....   +.+.+.+.         +.--+.++.+||.+..+
T Consensus       248 ~le~~k~~gN~~fk~G~y~~A~E~Yte-al~idP~n~~~nakl---Y~nra~v~~rLgrl~eaisdc~~Al~iD~syika  323 (486)
T KOG0550|consen  248 KLEVKKERGNDAFKNGNYRKAYECYTE-ALNIDPSNKKTNAKL---YGNRALVNIRLGRLREAISDCNEALKIDSSYIKA  323 (486)
T ss_pred             HHHHHHhhhhhHhhccchhHHHHHHHH-hhcCCccccchhHHH---HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence            112444578888999999999999999 777899887653322   22333333         56668899999987654


Q ss_pred             H
Q 008435          519 L  519 (565)
Q Consensus       519 l  519 (565)
                      +
T Consensus       324 l  324 (486)
T KOG0550|consen  324 L  324 (486)
T ss_pred             H
Confidence            4

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.90  E-value=0.00066  Score=72.52  Aligned_cols=167  Identities=16%  Similarity=0.043  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      +..+..+.......-+.........+...+|....++|..+..+++.|++++|+..++..++.     .|+|+       
T Consensus       273 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-----~P~N~-------  340 (484)
T COG4783         273 DFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-----QPDNP-------  340 (484)
T ss_pred             cHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-----CCCCH-------
Confidence            334444444433333333333334444555899999999999999999999999999997543     56654       


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhH
Q 008435          450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDI  527 (565)
Q Consensus       450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~  527 (565)
                      ......+.++...|+.++|.+.+++ +..+.|+.+.....|.+++...+..-  +..+++.+.-+|++...|.-..+..+
T Consensus       341 ~~~~~~~~i~~~~nk~~~A~e~~~k-al~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~  419 (484)
T COG4783         341 YYLELAGDILLEANKAKEAIERLKK-ALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA  419 (484)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHH-HHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence            1123478999999999999999999 77788888755444444433333332  78888999999998888877766655


Q ss_pred             HHhhhhhhhhhhhhhhhccchhH
Q 008435          528 IYVNCYELKKKRFASCFFGFSVL  550 (565)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~  550 (565)
                      ...+..++... ++|.|+--|..
T Consensus       420 ~~g~~~~a~~A-~AE~~~~~G~~  441 (484)
T COG4783         420 ELGNRAEALLA-RAEGYALAGRL  441 (484)
T ss_pred             HhCchHHHHHH-HHHHHHhCCCH
Confidence            55555554444 56666666654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.90  E-value=1.5e-05  Score=64.80  Aligned_cols=64  Identities=27%  Similarity=0.369  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKE-------PDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-------P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +..+..+|..+...|++++|+++|++++++.       |+-+.++..+|.++...|++++|+++|++|+++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5668899999999999999999999999752       233779999999999999999999999999764

...

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.90  E-value=0.00017  Score=83.72  Aligned_cols=63  Identities=16%  Similarity=0.201  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      -.+++.+|..|-+.|+.++|...++++|+.||+|+.+...+|+.|... +.++|++++.+|+..
T Consensus       116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            458999999999999999999999999999999999999999999999 999999999999764

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.89  E-value=0.00016  Score=79.11  Aligned_cols=140  Identities=16%  Similarity=0.128  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      ..++..+...++.++|.+.++..++.|..+|++.+.+...|..+...|+-+||.++-+.+++     .|+...       
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr-----~d~~S~-------   75 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR-----NDLKSH-------   75 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc-----cCcccc-------
Confidence            46788999999999999999999999999999999999999999999999999999999954     333322       


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhh
Q 008435          450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVS  522 (565)
Q Consensus       450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~  522 (565)
                      ..|..+|..+....+|+||++.|+. |...+|+|-............++..-  .+.-.+.++++|+....|-..
T Consensus        76 vCwHv~gl~~R~dK~Y~eaiKcy~n-Al~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~  149 (700)
T KOG1156|consen   76 VCWHVLGLLQRSDKKYDEAIKCYRN-ALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF  149 (700)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence            3466699999999999999999999 77788888765332211111111111  555567788888876655443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.88  E-value=0.00015  Score=80.76  Aligned_cols=107  Identities=17%  Similarity=0.169  Sum_probs=94.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhhhhcCCCCChh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE--YLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~--~~~rAl~l~~l~~~P~~~~  443 (565)
                      +.++..++..|..+..+|+.+||...|..|+.+||+++.....+|.++.+.|+..-|..  ....|++     .||.++ 
T Consensus       681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr-----~dp~n~-  754 (799)
T KOG4162|consen  681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR-----LDPLNH-  754 (799)
T ss_pred             hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-----hCCCCH-
Confidence            44567789999999999999999999999999999999999999999999998877777  8888854     457655 


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                            .+|+++|.++..+|+.++|.+.|+- +.++++.+|.
T Consensus       755 ------eaW~~LG~v~k~~Gd~~~Aaecf~a-a~qLe~S~PV  789 (799)
T KOG4162|consen  755 ------EAWYYLGEVFKKLGDSKQAAECFQA-ALQLEESNPV  789 (799)
T ss_pred             ------HHHHHHHHHHHHccchHHHHHHHHH-HHhhccCCCc
Confidence                  6899999999999999999999998 6678877773

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.88  E-value=0.0001  Score=65.78  Aligned_cols=72  Identities=18%  Similarity=0.056  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                      ++++|.+|.++...|+.++|+.+|++|++..     ..    .+....++..+|.++..+|++|+|+..+++ .....|+
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-----L~----~~~~~~a~i~lastlr~LG~~deA~~~L~~-~~~~~p~   70 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAG-----LS----GADRRRALIQLASTLRNLGRYDEALALLEE-ALEEFPD   70 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CC----chHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCC
Confidence            3688999999999999999999999997632     21    122235788899999999999999999999 5555677


Q ss_pred             Cc
Q 008435          483 EP  484 (565)
Q Consensus       483 ~~  484 (565)
                      ++
T Consensus        71 ~~   72 (120)
T PF12688_consen   71 DE   72 (120)
T ss_pred             cc
Confidence            43

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.87  E-value=7.9e-05  Score=76.40  Aligned_cols=142  Identities=18%  Similarity=0.150  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC--CCC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKE--PDN----INALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d--P~~----a~A~~~LG~~~~~~-g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      +...+..+...+..++.++|+.++++|+++.  -++    +.++..+|.+|... |++++|+++|++|++.....+.   
T Consensus        74 Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---  150 (282)
T PF14938_consen   74 AAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---  150 (282)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---
Confidence            3344566666677779999999999999863  222    67899999999999 9999999999999876311111   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--CCCC-chhhhhhhh-HHHHHHH--HH--HHHHHHHHhcCC
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK--EPEE-PKSKAHYYD-GLVVLAR--YV--ANITFLIFATSP  513 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l--~P~~-~~~~~~~~~-~~~~La~--~l--~~~l~~Al~l~P  513 (565)
                         .......+..+|.++.+.|+|++|++.|++++...  ++.. .....++.. +++.|..  ..  .+.+++....+|
T Consensus       151 ---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~  227 (282)
T PF14938_consen  151 ---PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP  227 (282)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred             ---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence               11122356678999999999999999999955421  1111 111122211 1122221  11  677788888888


Q ss_pred             CcH
Q 008435          514 SII  516 (565)
Q Consensus       514 ~~~  516 (565)
                      ++.
T Consensus       228 ~F~  230 (282)
T PF14938_consen  228 SFA  230 (282)
T ss_dssp             TST
T ss_pred             CCC
Confidence            764

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.85  E-value=1.7e-05  Score=57.55  Aligned_cols=44  Identities=27%  Similarity=0.390  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT  412 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~  412 (565)
                      |+.++.+|..+.+.|++++|++.|+++++.+|+|+++|..+|.+
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            35688999999999999999999999999999999999999863

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.82  E-value=0.00038  Score=78.77  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=92.9

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      -|..+|..+..++.+|..+.++|+.+++....-.|-.++|++.+-|..++....++|++++|.-||.|||+.     +|.
T Consensus       165 vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~-----~p~  239 (895)
T KOG2076|consen  165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQA-----NPS  239 (895)
T ss_pred             HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc-----CCc
Confidence            344456678899999999999999999999999999999999999999999999999999999999999765     465


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      +.       .-.+.....|.+.|++.+|.+-|.+ +..++|
T Consensus       240 n~-------~~~~ers~L~~~~G~~~~Am~~f~~-l~~~~p  272 (895)
T KOG2076|consen  240 NW-------ELIYERSSLYQKTGDLKRAMETFLQ-LLQLDP  272 (895)
T ss_pred             ch-------HHHHHHHHHHHHhChHHHHHHHHHH-HHhhCC
Confidence            43       1234567889999999999999999 555666

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.00096  Score=68.01  Aligned_cols=57  Identities=16%  Similarity=0.359  Sum_probs=41.2

Q ss_pred             HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA  429 (565)
Q Consensus       373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA  429 (565)
                      |-.|..++-..+.++|+++|...++.||...+++..||.++...|..|.|+..-+..
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L   95 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTL   95 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            455666667777777777777777777777777777777777777777777655444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.81  E-value=0.00012  Score=78.23  Aligned_cols=94  Identities=23%  Similarity=0.274  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ++..+.+|..+...++..+|++.++++++.+|+++..+...+..+...++++.|++..++|++..     |.+       
T Consensus       200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-----P~~-------  267 (395)
T PF09295_consen  200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELS-----PSE-------  267 (395)
T ss_pred             CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----chh-------
Confidence            44566788888888888999999999999999999999999999999999999999999998753     432       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      ...|+.|+.+|...|++++|+..++.
T Consensus       268 f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  268 FETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            35788999999999999999998887

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.81  E-value=5.6e-05  Score=60.43  Aligned_cols=65  Identities=29%  Similarity=0.402  Sum_probs=54.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       409 LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      |..+|.+.+++++|++++++++++     +|+++       ..+...|.++..+|++++|++.|++ +...+|+++..
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~-------~~~~~~a~~~~~~g~~~~A~~~l~~-~l~~~p~~~~~   65 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL-----DPDDP-------ELWLQRARCLFQLGRYEEALEDLER-ALELSPDDPDA   65 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh-----Ccccc-------hhhHHHHHHHHHhccHHHHHHHHHH-HHHHCCCcHHH
Confidence            467899999999999999999764     46544       4577799999999999999999999 66788887754

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.81  E-value=6e-05  Score=59.36  Aligned_cols=60  Identities=30%  Similarity=0.505  Sum_probs=48.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       413 ~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                      +...|++++|++.|+++++.     +|++.       .+++.+|.+|...|++++|.+.+++ +...+|+++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~-----~p~~~-------~~~~~la~~~~~~g~~~~A~~~l~~-~~~~~~~~~~   60 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR-----NPDNP-------EARLLLAQCYLKQGQYDEAEELLER-LLKQDPDNPE   60 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH-----TTTSH-------HHHHHHHHHHHHTT-HHHHHHHHHC-CHGGGTTHHH
T ss_pred             ChhccCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCcCHHH
Confidence            35789999999999999765     46544       4677899999999999999999999 7767777653

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.80  E-value=0.0005  Score=62.73  Aligned_cols=77  Identities=29%  Similarity=0.246  Sum_probs=63.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      .+..++.-|.-.++.|+|++|++.|+.....     -|.    .+....+...+|.+|+..|++++|++.+++ -.+++|
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~----g~ya~qAqL~l~yayy~~~~y~~A~a~~~r-FirLhP   78 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR-----YPF----GEYAEQAQLDLAYAYYKQGDYEEAIAAYDR-FIRLHP   78 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCC----CcccHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCC
Confidence            4778999999999999999999999998543     232    122235788899999999999999999999 677999


Q ss_pred             CCchhhh
Q 008435          482 EEPKSKA  488 (565)
Q Consensus       482 ~~~~~~~  488 (565)
                      .++.+..
T Consensus        79 ~hp~vdY   85 (142)
T PF13512_consen   79 THPNVDY   85 (142)
T ss_pred             CCCCccH
Confidence            9997644

>PRK15331 chaperone protein SicA; Provisional

Probab=97.78  E-value=0.0003  Score=65.65  Aligned_cols=139  Identities=9%  Similarity=0.019  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      .+++.+.-...+..|.      .++.+..+.++.-+..|..|.-+++.|++++|+..|+-..-     .+|.++      
T Consensus         9 ~~~~~~~i~~al~~G~------tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-----~d~~n~------   71 (165)
T PRK15331          9 EERVAEMIWDAVSEGA------TLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-----YDFYNP------   71 (165)
T ss_pred             HHHHHHHHHHHHHCCC------CHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCcCcH------
Confidence            3444444444445543      34455678888899999999999999999999999977732     355543      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIID  526 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~  526 (565)
                       +-+.+||.|+..+|+|++|+..|.. +..++++||....+..+.+..++...  .++|+.++. +|.+..+....+..-
T Consensus        72 -~Y~~GLaa~~Q~~k~y~~Ai~~Y~~-A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L  148 (165)
T PRK15331         72 -DYTMGLAAVCQLKKQFQKACDLYAV-AFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYL  148 (165)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHH-HHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHH
Confidence             2356789999999999999999999 55588899876554444444444333  677887777 677766655544433


Q ss_pred             H
Q 008435          527 I  527 (565)
Q Consensus       527 ~  527 (565)
                      +
T Consensus       149 ~  149 (165)
T PRK15331        149 E  149 (165)
T ss_pred             H
Confidence            3

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.76  E-value=2e-05  Score=65.27  Aligned_cols=61  Identities=33%  Similarity=0.432  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA  429 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA  429 (565)
                      +...++.+|..+.+.|++++|+..+++ +..+|.+...++.+|.++.+.|+++||+++|++|
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            455677789999999999999999999 9999999999999999999999999999999986

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.73  E-value=0.0013  Score=64.18  Aligned_cols=105  Identities=27%  Similarity=0.255  Sum_probs=71.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435          401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE  480 (565)
Q Consensus       401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~  480 (565)
                      ..+++++..|..+++.|++++|++.|++.+...     |..    +....+.+++|.++...|++++|+..+++ .....
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s----~~a~~A~l~la~a~y~~~~y~~A~~~~~~-fi~~y   72 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNS----PYAPQAQLMLAYAYYKQGDYEEAIAAYER-FIKLY   72 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTS----TTHHHHHHHHHHHHHHTT-HHHHHHHHHH-HHHH-
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHC
Confidence            357889999999999999999999999997652     432    22345788999999999999999999999 66689


Q ss_pred             CCCchhhh-hhhhHHHHHHH---H---H---------HHHHHHHHhcCCCc
Q 008435          481 PEEPKSKA-HYYDGLVVLAR---Y---V---------ANITFLIFATSPSI  515 (565)
Q Consensus       481 P~~~~~~~-~~~~~~~~La~---~---l---------~~~l~~Al~l~P~~  515 (565)
                      |+++.... .|..+......   .   .         ...++..+...|+.
T Consensus        73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S  123 (203)
T PF13525_consen   73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS  123 (203)
T ss_dssp             TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred             CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence            99886533 22223222111   1   0         55677777777763

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.73  E-value=0.00091  Score=66.51  Aligned_cols=109  Identities=22%  Similarity=0.257  Sum_probs=84.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      .+..+++++..|...++.|++++|+..|++.....|.+   ..+...++.++++.+++++|+...++-+++     .|.+
T Consensus        30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-----yP~~  104 (254)
T COG4105          30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-----YPTH  104 (254)
T ss_pred             cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCC
Confidence            35578999999999999999999999999999999876   678999999999999999999999999665     4665


Q ss_pred             hhhhhHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHhhccCCCC
Q 008435          442 PEAIDLLIVASQWSGVACIR--------QEKWEEGIAHLERIGNLKEPEE  483 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~--------~g~~~eAi~~leraa~~l~P~~  483 (565)
                      + +.+   .+++..|.++..        +..-.+|+..|+. ....-|+.
T Consensus       105 ~-n~d---Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~-~i~ryPnS  149 (254)
T COG4105         105 P-NAD---YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE-LVQRYPNS  149 (254)
T ss_pred             C-Chh---HHHHHHHHHHhccCCccccCHHHHHHHHHHHHH-HHHHCCCC
Confidence            5 222   356677777643        2223456666666 34455554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.0005  Score=72.43  Aligned_cols=121  Identities=17%  Similarity=0.211  Sum_probs=90.0

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      ...+..+.--.+.++..|..+...|+.++|+++|-+.-.+--+++++++.++.+|....+..+|+++|.++.++.     
T Consensus       514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli-----  588 (840)
T KOG2003|consen  514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI-----  588 (840)
T ss_pred             HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----
Confidence            444443333368889999999999999999999999988888999999999999999999999999999996653     


Q ss_pred             CCChhhhh---------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          439 PTEPEAID---------------------------LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       439 P~~~~~~~---------------------------~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                      |+||.-..                           -..+...|+|..|....-+++|+.+||+ +....|+..+
T Consensus       589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek-aaliqp~~~k  661 (840)
T KOG2003|consen  589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK-AALIQPNQSK  661 (840)
T ss_pred             CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH-HHhcCccHHH
Confidence            44432100                           0112345788888888888888888888 4446666543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.67  E-value=0.00013  Score=80.78  Aligned_cols=130  Identities=16%  Similarity=0.110  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +.+....|...++.++++++.++++..++++|-....|+.+|.++.+.++++.|.++|.+.+.     ++|++.      
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt-----L~Pd~~------  553 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT-----LEPDNA------  553 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-----cCCCch------
Confidence            333444555556678999999999999999999999999999999999999999999999954     456654      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhc
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFAT  511 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l  511 (565)
                       .+|.++..+|.+.|+-.+|...+++ +..-|-++.+.+..|....+-.+..-  .+.+.+.+.+
T Consensus       554 -eaWnNls~ayi~~~~k~ra~~~l~E-AlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  554 -EAWNNLSTAYIRLKKKKRAFRKLKE-ALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             -hhhhhhhHHHHHHhhhHHHHHHHHH-HhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence             5688888999999999999999988 44455566666665544333333322  4555555544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.58  E-value=0.0013  Score=62.38  Aligned_cols=135  Identities=17%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~-~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ...+.+|..+.+.|++.||..+|++++. +..+++..+..+++..+..+++.+|...+++..+     -+|..- .++  
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e-----~~pa~r-~pd--  161 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME-----YNPAFR-SPD--  161 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh-----cCCccC-CCC--
Confidence            4567999999999999999999999998 8889999999999999999999999999999843     344321 112  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH------HHHHHHHHhcCCCcH
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------ANITFLIFATSPSII  516 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------~~~l~~Al~l~P~~~  516 (565)
                        .+..+|.++..+|++++|...|+. +..--|. +.....|..-+...|...      .+..+.+.+-.|.+.
T Consensus       162 --~~Ll~aR~laa~g~~a~Aesafe~-a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r  231 (251)
T COG4700         162 --GHLLFARTLAAQGKYADAESAFEV-AISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR  231 (251)
T ss_pred             --chHHHHHHHHhcCCchhHHHHHHH-HHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence              234478899999999999999999 4434433 233333433333333111      344455555555444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.57  E-value=0.0021  Score=71.19  Aligned_cols=96  Identities=17%  Similarity=0.146  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      .+.++.+|..+...|++++|+.++++||+.+|..++.|...|.++-..|++++|.++++.|-++     |..   +... 
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~~---DRyi-  264 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL-----DLA---DRYI-  264 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----Chh---hHHH-
Confidence            5778999999999999999999999999999999999999999999999999999999999543     222   2111 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                         ....+..+.+.|+.++|.+.+....
T Consensus       265 ---NsK~aKy~LRa~~~e~A~~~~~~Ft  289 (517)
T PF12569_consen  265 ---NSKCAKYLLRAGRIEEAEKTASLFT  289 (517)
T ss_pred             ---HHHHHHHHHHCCCHHHHHHHHHhhc
Confidence               1224556789999999999998843

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.54  E-value=0.0023  Score=64.25  Aligned_cols=105  Identities=17%  Similarity=0.115  Sum_probs=79.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435          401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE  480 (565)
Q Consensus       401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~  480 (565)
                      .++..++..|.-+...|++++|++.|+++++.     .|..    +....+.+++|.++.+.|++++|+..+++ .....
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-----yP~s----~~a~~a~l~la~ayy~~~~y~~A~~~~e~-fi~~~   99 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNR-----YPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDR-FIRLN   99 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhC
Confidence            57888999999999999999999999999654     3432    33345678999999999999999999999 67799


Q ss_pred             CCCchhhhhhh-hHHHH--HH-----HH-------------H--HHHHHHHHhcCCCc
Q 008435          481 PEEPKSKAHYY-DGLVV--LA-----RY-------------V--ANITFLIFATSPSI  515 (565)
Q Consensus       481 P~~~~~~~~~~-~~~~~--La-----~~-------------l--~~~l~~Al~l~P~~  515 (565)
                      |+++.....++ .+...  ++     ..             .  .+.+++.++.-|+.
T Consensus       100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S  157 (243)
T PRK10866        100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS  157 (243)
T ss_pred             cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence            99997654222 22211  11     00             0  46788889998974

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.54  E-value=8.4e-05  Score=77.46  Aligned_cols=108  Identities=15%  Similarity=0.031  Sum_probs=70.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-cC
Q 008435          402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL-KE  480 (565)
Q Consensus       402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~-l~  480 (565)
                      ..+++-.||+.|+-.|+|++|+.+-+.=+++.   ..   ..+......|+.++|+||..+|+++.|+++|++.... .+
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia---~e---fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie  267 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA---QE---FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE  267 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHH---HH---hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH
Confidence            35788999999999999999999877765542   00   1122233468899999999999999999999983221 01


Q ss_pred             CCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHH
Q 008435          481 PEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINL  518 (565)
Q Consensus       481 P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~  518 (565)
                      =.+...+.   +.-+.||..+  .+-+++|+...-.+-.+
T Consensus       268 lg~r~vEA---QscYSLgNtytll~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  268 LGNRTVEA---QSCYSLGNTYTLLKEVQKAITYHQRHLAI  304 (639)
T ss_pred             hcchhHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            11211111   1223566666  66677777765544333

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.53  E-value=0.00094  Score=68.81  Aligned_cols=132  Identities=16%  Similarity=0.088  Sum_probs=96.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g--~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +.|........++..++.+.|.+.++.+-+.|.++.-.....+++....|  ++.+|...|+...+.     .+.     
T Consensus       130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-----~~~-----  199 (290)
T PF04733_consen  130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-----FGS-----  199 (290)
T ss_dssp             CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-----S-------
T ss_pred             cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-----cCC-----
Confidence            45666667778899999999999999999999999888888888888877  589999999997321     111     


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH----------HHHHHHHHhcCCCc
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV----------ANITFLIFATSPSI  515 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l----------~~~l~~Al~l~P~~  515 (565)
                        .......++.|+..+|+++||.+.+++ +...+|+++....       ++..+.          .+++.+.-..+|++
T Consensus       200 --t~~~lng~A~~~l~~~~~~eAe~~L~~-al~~~~~~~d~La-------Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  200 --TPKLLNGLAVCHLQLGHYEEAEELLEE-ALEKDPNDPDTLA-------NLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             --SHHHHHHHHHHHHHCT-HHHHHHHHHH-HCCC-CCHHHHHH-------HHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             --CHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHhccCCHHHHH-------HHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence              123456789999999999999999999 6678888875422       333221          56777777788887


Q ss_pred             HHHH
Q 008435          516 INLL  519 (565)
Q Consensus       516 ~~~l  519 (565)
                      .-..
T Consensus       270 ~~~~  273 (290)
T PF04733_consen  270 PLVK  273 (290)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            6443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.51  E-value=0.00094  Score=66.94  Aligned_cols=102  Identities=20%  Similarity=0.196  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                      .|..+.-++..|+|++|++.|..-++.     -|+.    ....+|+||||.+++.+|++++|...|.+ +....|+.++
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~-~~k~~P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFAR-VVKDYPKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC----cccchhHHHHHHHHHhcccchHHHHHHHH-HHHhCCCCCC
Confidence            788888889999999999999999764     3432    23346899999999999999999999999 5557788876


Q ss_pred             hhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHh
Q 008435          486 SKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTV  521 (565)
Q Consensus       486 ~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~  521 (565)
                      .-    +++.-+|.+.         ...|++.++.-|+...+...
T Consensus       214 Ap----dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         214 AP----DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             Ch----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            52    3444555544         57788888888887665443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.00025  Score=69.32  Aligned_cols=98  Identities=17%  Similarity=0.160  Sum_probs=87.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +.+++.+-+.|..+....+|+.|+.+|-+||.++|..+.-|.+.+.+|++..+|+.+.+--++|+++     +|+     
T Consensus         7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-----~~N-----   76 (284)
T KOG4642|consen    7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-----DPN-----   76 (284)
T ss_pred             chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-----ChH-----
Confidence            4467788889999999999999999999999999999999999999999999999999999999754     232     


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                        ...+++.+|.+......|++|+..+.++
T Consensus        77 --~vk~h~flg~~~l~s~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   77 --LVKAHYFLGQWLLQSKGYDEAIKVLQRA  104 (284)
T ss_pred             --HHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence              2367899999999999999999999994

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.47  E-value=0.0011  Score=71.12  Aligned_cols=100  Identities=18%  Similarity=0.179  Sum_probs=71.9

Q ss_pred             HHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC------Ch-------hhhh
Q 008435          380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT------EP-------EAID  446 (565)
Q Consensus       380 ~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~------~~-------~~~~  446 (565)
                      -++.+..+-+++-++||+++|++++||..|+.-  ...-..||+++|+||++.........      ..       .+..
T Consensus       179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~  256 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN  256 (539)
T ss_pred             HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence            567788888999999999999999999998853  33457899999999987641111110      00       0111


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                      ....+...++.|..++|+.+||++.++. ....+|.
T Consensus       257 ~~~y~KrRLAmCarklGr~~EAIk~~rd-Llke~p~  291 (539)
T PF04184_consen  257 VLVYAKRRLAMCARKLGRLREAIKMFRD-LLKEFPN  291 (539)
T ss_pred             hhhhhHHHHHHHHHHhCChHHHHHHHHH-HHhhCCc
Confidence            2233566799999999999999999999 4445554

The molecular function of this protein is uncertain.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.45  E-value=0.0009  Score=76.46  Aligned_cols=111  Identities=14%  Similarity=-0.030  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-----GLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~-----g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      ..+-...........+.++.-++.++++++-+-+..++..+..+...     .+.+.|..+|-++++++     +.    
T Consensus       420 ~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld-----~~----  490 (1238)
T KOG1127|consen  420 ITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLD-----VS----  490 (1238)
T ss_pred             HHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc-----cc----
Confidence            44444455556667788888888888888888777776666665433     35788999999997652     32    


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhH
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG  493 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~  493 (565)
                         +..++..+|.+|+.--+.-.|.+.|++ +-.+++.+........+.
T Consensus       491 ---~apaf~~LG~iYrd~~Dm~RA~kCf~K-AFeLDatdaeaaaa~adt  535 (1238)
T KOG1127|consen  491 ---LAPAFAFLGQIYRDSDDMKRAKKCFDK-AFELDATDAEAAAASADT  535 (1238)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhhhhHHHHHHH
Confidence               224677799999988899999999999 777888887654444333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.42  E-value=0.0011  Score=63.41  Aligned_cols=99  Identities=22%  Similarity=0.193  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNIN-----ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~-----A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      +-..|..++..|+|++|..-|+.||+..|....     .|.+.|.+.+.+++++.|++...+||++     +|.+.    
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-----~pty~----  168 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-----NPTYE----  168 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-----CchhH----
Confidence            445677777888888888888888888887643     5666777778888888888888888664     34322    


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE  483 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~  483 (565)
                         .|....+.+|.+..+|++|++-|++ +...+|..
T Consensus       169 ---kAl~RRAeayek~ek~eealeDyKk-i~E~dPs~  201 (271)
T KOG4234|consen  169 ---KALERRAEAYEKMEKYEEALEDYKK-ILESDPSR  201 (271)
T ss_pred             ---HHHHHHHHHHHhhhhHHHHHHHHHH-HHHhCcch
Confidence               3445567788888888888888888 55455543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.41  E-value=0.0012  Score=72.57  Aligned_cols=106  Identities=15%  Similarity=0.117  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh----
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA----  444 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~----  444 (565)
                      .+.+-..|..+...|+.++|..+.+.+++.|+.+.-.|+.+|.++....+|+||+.||+.|+..     +|+|.+.    
T Consensus        41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-----~~dN~qilrDl  115 (700)
T KOG1156|consen   41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-----EKDNLQILRDL  115 (700)
T ss_pred             chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-----CCCcHHHHHHH
Confidence            3445556666666666666766667777766666667777776666666677777777666443     2332210    


Q ss_pred             -----------------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435          445 -----------------------IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK  479 (565)
Q Consensus       445 -----------------------~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l  479 (565)
                                             .+.....|...++++...|++..|.+.++......
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                                   00111135557778889999999999888744433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.39  E-value=0.00081  Score=70.31  Aligned_cols=122  Identities=15%  Similarity=0.086  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a----~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      -.++...|..+++.|+.+..+.+|+.|++.--++.    -+|-.||+.|+..++|++|+++-..=+.+..+.++.- -  
T Consensus        17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl-G--   93 (639)
T KOG1130|consen   17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL-G--   93 (639)
T ss_pred             HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh-c--
Confidence            45677889999999999999999999999998874    4788999999999999999997665543321222211 0  


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh---hccCCCCchhhhhhhhHHHHHHHHH
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIG---NLKEPEEPKSKAHYYDGLVVLARYV  501 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa---~~l~P~~~~~~~~~~~~~~~La~~l  501 (565)
                       +  ..+..++|+.+...|.|+||+...+|.+   .+++..-.     -..+++++|.+|
T Consensus        94 -E--AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~-----e~RAlYNlgnvY  145 (639)
T KOG1130|consen   94 -E--AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL-----ESRALYNLGNVY  145 (639)
T ss_pred             -c--ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh-----hhHHHhhhhhhh
Confidence             0  1234569999999999999998877622   22322211     234555777666

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.35  E-value=0.00068  Score=69.51  Aligned_cols=105  Identities=17%  Similarity=0.060  Sum_probs=72.6

Q ss_pred             CHHHHHH-HHHHHHHCCCCCchHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          368 TPKELIA-LSVKFLSKGDKERPIPLLQLALNKEP------DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       368 ~~~~l~~-lA~~l~~~g~~~eAi~~l~~AL~~dP------~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      ++-++|. -|..+...|++++|..+|.+|.+..-      .-+.++...|.++... ++++|+++|++|+++....+++ 
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~-  110 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF-  110 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H-
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH-
Confidence            3444555 45556678999999999999966431      2256777777777666 9999999999998864112222 


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcc
Q 008435          441 EPEAIDLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLK  479 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~-g~~~eAi~~leraa~~l  479 (565)
                           ......+..+|.+|... |++++|+++|++++...
T Consensus       111 -----~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y  145 (282)
T PF14938_consen  111 -----SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELY  145 (282)
T ss_dssp             -----HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                 22234577799999998 99999999999966543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.35  E-value=0.0031  Score=64.68  Aligned_cols=110  Identities=19%  Similarity=0.193  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                      .-..|+-|+.+|+|+||++||.+++.     .+|.++       ..+.+.+.+|.+++++..|..-.+. +..++..+.+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia-----~~P~Np-------V~~~NRA~AYlk~K~FA~AE~DC~~-AiaLd~~Y~K  166 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIA-----VYPHNP-------VYHINRALAYLKQKSFAQAEEDCEA-AIALDKLYVK  166 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhc-----cCCCCc-------cchhhHHHHHHHHHHHHHHHHhHHH-HHHhhHHHHH
Confidence            46789999999999999999999964     457665       2355688999999999999999888 5545544433


Q ss_pred             hhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHH
Q 008435          486 SKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDII  528 (565)
Q Consensus       486 ~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~  528 (565)
                      +......+.-.||...  .+-++.++++.|+..++.+...+...+
T Consensus       167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl  211 (536)
T KOG4648|consen  167 AYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSL  211 (536)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcch
Confidence            3222222333344333  677899999999988887777665543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.32  E-value=0.002  Score=71.73  Aligned_cols=133  Identities=14%  Similarity=0.100  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      -+......|...|+..+|....++-++ .|+++..|-.+|.+.....-|++|.+.....-                  ..
T Consensus       426 mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s------------------ar  486 (777)
T KOG1128|consen  426 MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS------------------AR  486 (777)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhh------------------HH
Confidence            344555667778899999999999888 77788888888887665555555555444431                  12


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH----HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV----ANITFLIFATSPSIINLLTVSNII  525 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l----~~~l~~Al~l~P~~~~~l~~~~~~  525 (565)
                      |...+|....+.++|+++..++++ ..++||-....  ||..+..++...-    .++|.+.+.++|++.+.|.+..-.
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~-sl~~nplq~~~--wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a  562 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLER-SLEINPLQLGT--WFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA  562 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHH-HhhcCccchhH--HHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence            444556656667888888888887 66677776644  3333322222111    677788888888887777666443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.26  E-value=0.0045  Score=68.24  Aligned_cols=62  Identities=19%  Similarity=0.127  Sum_probs=31.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA  429 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA  429 (565)
                      ...-+..+|..+.+.++.+.|...|.+-++..|+++..|..|+.+-...|+.-.|...++++
T Consensus       684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra  745 (913)
T KOG0495|consen  684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA  745 (913)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            44445555555555555555555555555555555555555554444444444444444444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=0.011  Score=58.89  Aligned_cols=139  Identities=11%  Similarity=0.064  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      ..+-.+..++..|.|.-..+.+.+.++.| |.++...-.||.+.++.|+.+.|..+|++.-+.. -.++     ......
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~-----~~q~~~  252 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLD-----GLQGKI  252 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhh-----ccchhH
Confidence            34556667778899999999999999999 6788889999999999999999999999773211 0000     111223


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435          450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII  516 (565)
Q Consensus       450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~  516 (565)
                      .++-+.+.+|..++++.+|...+.+ ..+.+|.++..-..-...+..++..-  ++.++.+++..|...
T Consensus       253 ~V~~n~a~i~lg~nn~a~a~r~~~~-i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  253 MVLMNSAFLHLGQNNFAEAHRFFTE-ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHhhhhhheecccchHHHHHHHhh-ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            4566677888999999999999999 67788888865443333344444444  788899999999754

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.23  E-value=0.0003  Score=75.06  Aligned_cols=128  Identities=16%  Similarity=0.151  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ++++=.+|...+..++++.|+..|-+||++||+++..+...+..+...+++..|+.-+.+||+.     +|.       .
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-----dP~-------~   71 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL-----DPT-------Y   71 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc-----Cch-------h
Confidence            4556677888899999999999999999999999999999999999999999999999999764     232       3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPS  514 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~  514 (565)
                      ..+|+..|.++...+++-+|...|++ ...+.|+++.....+.+     ....  .+-+++++...++
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~-~~~l~Pnd~~~~r~~~E-----c~~~vs~~~fe~ai~~~~~  133 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEK-VKKLAPNDPDATRKIDE-----CNKIVSEEKFEKAILTPEG  133 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHH-hhhcCcCcHHHHHHHHH-----HHHHHHHHhhhhcccCCcc
Confidence            35788899999999999999999999 66799999875442211     1112  5567777766553

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.19  E-value=0.0056  Score=58.71  Aligned_cols=125  Identities=18%  Similarity=0.137  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                      +-.-|+-++..|+|++|..-|.+|++..     |.-.+.  .-..-|.+.|.|...++.++.|++...+ +..++|.+-+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~c-----p~~~~e--~rsIly~Nraaa~iKl~k~e~aI~dcsK-aiel~pty~k  169 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESC-----PSTSTE--ERSILYSNRAAALIKLRKWESAIEDCSK-AIELNPTYEK  169 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhC-----ccccHH--HHHHHHhhhHHHHHHhhhHHHHHHHHHh-hHhcCchhHH
Confidence            3456888899999999999999998753     321211  1112366789999999999999999999 7778887665


Q ss_pred             hhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhhhh
Q 008435          486 SKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKK  538 (565)
Q Consensus       486 ~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~~~  538 (565)
                      +......++-.+-..-  ++-|++.++.+|...++...+.+........-+.+|.
T Consensus       170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe  224 (271)
T KOG4234|consen  170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE  224 (271)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4332222222221111  7889999999999999998888877666655555553

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.17  E-value=0.018  Score=54.69  Aligned_cols=122  Identities=16%  Similarity=0.098  Sum_probs=87.8

Q ss_pred             HHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHH
Q 008435          376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS  455 (565)
Q Consensus       376 A~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~l  455 (565)
                      +....++=|.+++..-..+.++..|.... .+.||....+.|++.||..+|+++++-.    -.+|+       .....+
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~----fA~d~-------a~lLgl  130 (251)
T COG4700          63 LMALQQKLDPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGI----FAHDA-------AMLLGL  130 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccc----cCCCH-------HHHHHH
Confidence            34445556777777777888888887644 6889999999999999999999995421    11221       235567


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCc
Q 008435          456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSI  515 (565)
Q Consensus       456 G~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~  515 (565)
                      +.+.+..+++.+|...+|+ .-+-+|..-....     ...++..+         +..++.++..-|+.
T Consensus       131 A~Aqfa~~~~A~a~~tLe~-l~e~~pa~r~pd~-----~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         131 AQAQFAIQEFAAAQQTLED-LMEYNPAFRSPDG-----HLLFARTLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             HHHHHhhccHHHHHHHHHH-HhhcCCccCCCCc-----hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence            8889999999999999999 5556665433222     22444444         67888999988874

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.017  Score=63.19  Aligned_cols=139  Identities=16%  Similarity=0.104  Sum_probs=95.8

Q ss_pred             HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------------------
Q 008435          373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL-------------------  433 (565)
Q Consensus       373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~-------------------  433 (565)
                      ++.|..+++.++.|+|+..++   -.|+.+.......|++.+++|+|++|.+.|+..++-.                   
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            799999999999999999999   7788888899999999999999999999999986542                   


Q ss_pred             ---hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----hhccCCCCch---hhhhhhhHHHHHHHHH--
Q 008435          434 ---FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI----GNLKEPEEPK---SKAHYYDGLVVLARYV--  501 (565)
Q Consensus       434 ---~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera----a~~l~P~~~~---~~~~~~~~~~~La~~l--  501 (565)
                         .+...|..+   +....-+|+.+.++...|+|.+|++.++++    -..++-+|..   .........+.++.++  
T Consensus       160 ~~~~~q~v~~v~---e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~  236 (652)
T KOG2376|consen  160 QVQLLQSVPEVP---EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL  236 (652)
T ss_pred             hHHHHHhccCCC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence               011112211   112235778999999999999999999994    0222222221   1111222233344333  


Q ss_pred             -------HHHHHHHHhcCCCcHH
Q 008435          502 -------ANITFLIFATSPSIIN  517 (565)
Q Consensus       502 -------~~~l~~Al~l~P~~~~  517 (565)
                             .+.|...++.+|....
T Consensus       237 ~Gqt~ea~~iy~~~i~~~~~D~~  259 (652)
T KOG2376|consen  237 QGQTAEASSIYVDIIKRNPADEP  259 (652)
T ss_pred             hcchHHHHHHHHHHHHhcCCCch
Confidence                   4557788888876543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.06  E-value=0.0044  Score=63.84  Aligned_cols=101  Identities=23%  Similarity=0.177  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHCC--CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          372 LIALSVKFLSKG--DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       372 l~~lA~~l~~~g--~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      .+..|+..+..|  ++.+|.-.|+..-+..+.++..+..++.+++.+|+++||++.+++|+     ..+|+++       
T Consensus       168 qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al-----~~~~~~~-------  235 (290)
T PF04733_consen  168 QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL-----EKDPNDP-------  235 (290)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC-----CC-CCHH-------
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----HhccCCH-------
Confidence            344455555444  69999999999988889999999999999999999999999999994     4456543       


Q ss_pred             HHHHHHHHHHHHcCCH-HHHHHHHHHHhhccCCCCch
Q 008435          450 VASQWSGVACIRQEKW-EEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       450 ~a~~~lG~a~~~~g~~-~eAi~~leraa~~l~P~~~~  485 (565)
                      .+..++..+...+|+. +++.+++++ +...+|++|.
T Consensus       236 d~LaNliv~~~~~gk~~~~~~~~l~q-L~~~~p~h~~  271 (290)
T PF04733_consen  236 DTLANLIVCSLHLGKPTEAAERYLSQ-LKQSNPNHPL  271 (290)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHH-CHHHTTTSHH
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHH-HHHhCCCChH
Confidence            3566788999999998 667778888 7777888774

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.013  Score=57.87  Aligned_cols=114  Identities=19%  Similarity=0.171  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---hhcCCCCChhhhhHHHH---HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISKL---FLAGHPTEPEAIDLLIV---ASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~---~l~~~P~~~~~~~~~~~---a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      ..++..-|+-++..|+|+||...|+.||..+   .+...|.+++.......   -+.+...|+...|+|-|++++-.. .
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se-i  256 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE-I  256 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH-H
Confidence            3455667777888888999988888887664   35667877765543321   356788999999999999999999 6


Q ss_pred             hccCCCCchhhhhhhhHHHHHHHHH-----HHHHHHHHhcCCCcHHHHH
Q 008435          477 NLKEPEEPKSKAHYYDGLVVLARYV-----ANITFLIFATSPSIINLLT  520 (565)
Q Consensus       477 ~~l~P~~~~~~~~~~~~~~~La~~l-----~~~l~~Al~l~P~~~~~l~  520 (565)
                      ....|.+.++  +|-.+- +-+.+.     .+-+.++++++|..+....
T Consensus       257 L~~~~~nvKA--~frRak-Ahaa~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  257 LRHHPGNVKA--YFRRAK-AHAAVWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             HhcCCchHHH--HHHHHH-HHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence            6677777654  222221 111111     6778999999999876543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.97  E-value=0.00083  Score=45.15  Aligned_cols=30  Identities=40%  Similarity=0.517  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +++|+.+|.++...|++++|+++|++++++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            456777777777777777777777777554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.95  E-value=0.021  Score=61.25  Aligned_cols=94  Identities=16%  Similarity=0.229  Sum_probs=76.6

Q ss_pred             HHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008435          380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC  459 (565)
Q Consensus       380 ~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~  459 (565)
                      ...+++++|+..+++..+.+|+   +...++.++...++..+|++...++++.     +|.+.   +    .+...+..+
T Consensus       180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~-----~p~d~---~----LL~~Qa~fL  244 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKE-----NPQDS---E----LLNLQAEFL  244 (395)
T ss_pred             hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh-----CCCCH---H----HHHHHHHHH
Confidence            4468999999999999999986   6678999999999999999999999753     45543   2    233467788


Q ss_pred             HHcCCHHHHHHHHHHHhhccCCCCchhhhh
Q 008435          460 IRQEKWEEGIAHLERIGNLKEPEEPKSKAH  489 (565)
Q Consensus       460 ~~~g~~~eAi~~leraa~~l~P~~~~~~~~  489 (565)
                      ...|+++.|++..++ +....|.+-..+..
T Consensus       245 l~k~~~~lAL~iAk~-av~lsP~~f~~W~~  273 (395)
T PF09295_consen  245 LSKKKYELALEIAKK-AVELSPSEFETWYQ  273 (395)
T ss_pred             HhcCCHHHHHHHHHH-HHHhCchhHHHHHH
Confidence            999999999999999 67788988766543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.93  E-value=0.00068  Score=45.85  Aligned_cols=30  Identities=33%  Similarity=0.430  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +++|+.+|.++...|++++|+++|++|+++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            456777777777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.90  E-value=0.0023  Score=42.95  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN  402 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~  402 (565)
                      |+.++.+|..+...|++++|+.+++++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            5678999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.011  Score=59.84  Aligned_cols=100  Identities=26%  Similarity=0.286  Sum_probs=79.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA---------------ISK  432 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA---------------l~l  432 (565)
                      ..++-+..+....+.|++.+|...|+.+++.+|++.++...++.+|...|+.++|...+...               +++
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l  212 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL  212 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            35667788889999999999999999999999999999999999999999998887776541               111


Q ss_pred             h--------------hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          433 L--------------FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       433 ~--------------~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      .              .+..+|+|.       .+.+.++..+...|+.++|.+++-.
T Consensus       213 l~qaa~~~~~~~l~~~~aadPdd~-------~aa~~lA~~~~~~g~~e~Ale~Ll~  261 (304)
T COG3118         213 LEQAAATPEIQDLQRRLAADPDDV-------EAALALADQLHLVGRNEAALEHLLA  261 (304)
T ss_pred             HHHHhcCCCHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            1              012222222       3566789999999999999999877

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.85  E-value=0.0024  Score=46.10  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      +++|+.+|.+|.+.|++++|++.|+++++.     +|+++
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~   35 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALAL-----DPDDP   35 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCH
Confidence            468999999999999999999999999765     57665

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.84  E-value=0.064  Score=56.35  Aligned_cols=179  Identities=14%  Similarity=0.024  Sum_probs=110.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh------------
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL------------  433 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~------------  433 (565)
                      +.+.......+..++..||++.|.....++++..|.++++.-..-++|.+.|+|.+......+.-+..            
T Consensus       150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~  229 (400)
T COG3071         150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ  229 (400)
T ss_pred             CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence            34556677889999999999999999999999999999999999999999999998888776664332            


Q ss_pred             -----hh--cCCCCChhh-------hhHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHH
Q 008435          434 -----FL--AGHPTEPEA-------IDLL----IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV  495 (565)
Q Consensus       434 -----~l--~~~P~~~~~-------~~~~----~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~  495 (565)
                           .+  ..++++.+.       .+..    +.....++.-+.++|++++|.+..+++.. .+ -|+.        ++
T Consensus       230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~-~D~~--------L~  299 (400)
T COG3071         230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQ-WDPR--------LC  299 (400)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hc-cChh--------HH
Confidence                 00  011111100       0000    00112245556899999999999998443 11 1221        11


Q ss_pred             HHHHHH--------HHHHHHHHhcCCCcHHHH----------HhhhhhhHHHhhhhhhhhhhhhhhhccchhHHHHHHH
Q 008435          496 VLARYV--------ANITFLIFATSPSIINLL----------TVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVA  556 (565)
Q Consensus       496 ~La~~l--------~~~l~~Al~l~P~~~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (565)
                      .+...+        ++.+++.++.+|+...++          +.+.++.+.++....  .+.=++.|.-+|.++..+|+
T Consensus       300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~  376 (400)
T COG3071         300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGE  376 (400)
T ss_pred             HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCC
Confidence            222222        677788888888766433          222223233332222  23335556666666666554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.83  E-value=0.0021  Score=43.40  Aligned_cols=34  Identities=29%  Similarity=0.470  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN  402 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~  402 (565)
                      ++.++.+|..+...|++++|+..|++|+++||+|
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.81  E-value=0.0012  Score=62.28  Aligned_cols=68  Identities=24%  Similarity=0.312  Sum_probs=48.7

Q ss_pred             CCCCCHHHHHHHHHHHHHC----------CCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----------HHHH
Q 008435          364 VENLTPKELIALSVKFLSK----------GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL-----------LEEA  422 (565)
Q Consensus       364 ~~~~~~~~l~~lA~~l~~~----------g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~-----------~~eA  422 (565)
                      .+|.|++.++.=|.++++.          .-+++|+.-|++||.++|+..+|++.+|.+|...+.           |++|
T Consensus        20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            4567788888777777654          245678999999999999999999999999997753           4555


Q ss_pred             HHHHHHHHH
Q 008435          423 VEYLECAIS  431 (565)
Q Consensus       423 ~~~~~rAl~  431 (565)
                      .++|++|++
T Consensus       100 ~~~FqkAv~  108 (186)
T PF06552_consen  100 TEYFQKAVD  108 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            556666643

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.80  E-value=0.036  Score=66.68  Aligned_cols=96  Identities=13%  Similarity=0.066  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKE--PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d--P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      ...+..+...+.+.|++++|+..|++..+..  | |...|..+-..+.+.|++++|.+.|++..+.. ....|+      
T Consensus       507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~-~gi~PD------  578 (1060)
T PLN03218        507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAET-HPIDPD------  578 (1060)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc-CCCCCc------
Confidence            3344444445555555555555555554422  2 24445555555555555555555555553210 000111      


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                        ...+..+-.+|.+.|++++|.+.|++
T Consensus       579 --~vTynaLI~ay~k~G~ldeA~elf~~  604 (1060)
T PLN03218        579 --HITVGALMKACANAGQVDRAKEVYQM  604 (1060)
T ss_pred             --HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence              11233344556666666666666666

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.78  E-value=0.052  Score=53.38  Aligned_cols=142  Identities=14%  Similarity=0.087  Sum_probs=90.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHH------HHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA------LILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A------~~~LG~~~~~~-g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      ++-..|..|...+++++.++|+.++++++++.-+-.+.      +..+|.+|... .++++|+.+|++|-+-  ..++- 
T Consensus        72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~--yk~ee-  148 (288)
T KOG1586|consen   72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY--YKGEE-  148 (288)
T ss_pred             hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH--Hcchh-
Confidence            34455667777788889999999999999988765443      44888888866 8999999999999543  22211 


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh----hhhhhhH-HHHHHHH--H--HHHHHHHHhc
Q 008435          441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS----KAHYYDG-LVVLARY--V--ANITFLIFAT  511 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~----~~~~~~~-~~~La~~--l--~~~l~~Al~l  511 (565)
                         .....+..+...+..-..+|+|.+|+..|++++. -.-+++..    +.++..+ +.-++..  .  ...+++-..+
T Consensus       149 ---s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~-~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  149 ---SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR-SSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL  224 (288)
T ss_pred             ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence               1112222344455556789999999999999553 22223321    1222221 1112111  1  5677777889


Q ss_pred             CCCcH
Q 008435          512 SPSII  516 (565)
Q Consensus       512 ~P~~~  516 (565)
                      +|.+.
T Consensus       225 dP~F~  229 (288)
T KOG1586|consen  225 DPAFT  229 (288)
T ss_pred             CCccc
Confidence            99865

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.70  E-value=0.03  Score=67.38  Aligned_cols=63  Identities=14%  Similarity=0.066  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAIS  431 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~  431 (565)
                      ...+..+...+.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|.+.|++..+
T Consensus       579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            4445555556677777777777777777766 45666777777777777777777777777644

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.68  E-value=0.02  Score=60.07  Aligned_cols=82  Identities=23%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008435          382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR  461 (565)
Q Consensus       382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~  461 (565)
                      -++.+.=++..++.+...|+++..+..||+++.+.+.|.+|.++++.|++.     .|..        ..+.++|.++.+
T Consensus       307 ~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-----~~s~--------~~~~~la~~~~~  373 (400)
T COG3071         307 PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL-----RPSA--------SDYAELADALDQ  373 (400)
T ss_pred             CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-----CCCh--------hhHHHHHHHHHH
Confidence            445555667777778888999999999999999999999999999999654     2321        235568999999


Q ss_pred             cCCHHHHHHHHHHHh
Q 008435          462 QEKWEEGIAHLERIG  476 (565)
Q Consensus       462 ~g~~~eAi~~leraa  476 (565)
                      +|+.++|.+.++++.
T Consensus       374 ~g~~~~A~~~r~e~L  388 (400)
T COG3071         374 LGEPEEAEQVRREAL  388 (400)
T ss_pred             cCChHHHHHHHHHHH
Confidence            999999999998844

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.019  Score=59.41  Aligned_cols=109  Identities=17%  Similarity=0.157  Sum_probs=74.8

Q ss_pred             HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------h-hhcCCCCChhhhhH
Q 008435          375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK------L-FLAGHPTEPEAIDL  447 (565)
Q Consensus       375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l------~-~l~~~P~~~~~~~~  447 (565)
                      .|..++..|+|++|...|+-+.+.|--+++.+..|+.+++..|.|.||....++|-+-      + ++...-+|.+..-.
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~  142 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT  142 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence            4666778999999999999999999999999999999999999999999988887211      0 01000011100000


Q ss_pred             H-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          448 L-------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       448 ~-------~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      +       .+-...++.+++..-.|.||++.|++ ....+|+.-
T Consensus       143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkr-vL~dn~ey~  185 (557)
T KOG3785|consen  143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKR-VLQDNPEYI  185 (557)
T ss_pred             HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhcChhhh
Confidence            0       00122356667777889999999999 555565543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.012  Score=60.85  Aligned_cols=86  Identities=19%  Similarity=0.189  Sum_probs=69.6

Q ss_pred             HHHHHCCCCCchHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHH
Q 008435          377 VKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS  455 (565)
Q Consensus       377 ~~l~~~g~~~eAi~~l~~AL~~dP~~a-~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~l  455 (565)
                      ..++.+.|++.|+.+++-.+..+...- ....++|.+++..|+|++|++.|+-+.+..    ++      +  .+...++
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~----~~------~--~el~vnL   97 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD----DA------P--AELGVNL   97 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC----CC------C--cccchhH
Confidence            346789999999999999998776654 778899999999999999999998884321    11      1  1235668


Q ss_pred             HHHHHHcCCHHHHHHHHHH
Q 008435          456 GVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       456 G~a~~~~g~~~eAi~~ler  474 (565)
                      +.|++.+|+|.||...-++
T Consensus        98 Acc~FyLg~Y~eA~~~~~k  116 (557)
T KOG3785|consen   98 ACCKFYLGQYIEAKSIAEK  116 (557)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999999999998887

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.64  E-value=0.058  Score=53.88  Aligned_cols=103  Identities=25%  Similarity=0.274  Sum_probs=76.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435          400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK  479 (565)
Q Consensus       400 P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l  479 (565)
                      -..+.-|+.-|....+.|++++|++.|++..+.     .|..+    ....+...++.++++.+++++|+...++ -..+
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~----~~~qa~l~l~yA~Yk~~~y~~A~~~~dr-Fi~l  100 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSP----YSEQAQLDLAYAYYKNGEYDLALAYIDR-FIRL  100 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCc----ccHHHHHHHHHHHHhcccHHHHHHHHHH-HHHh
Confidence            345778899999999999999999999999543     35432    2234667789999999999999999999 7779


Q ss_pred             CCCCchhhhhhhhHHHHHHHHH---------------HHHHHHHHhcCCC
Q 008435          480 EPEEPKSKAHYYDGLVVLARYV---------------ANITFLIFATSPS  514 (565)
Q Consensus       480 ~P~~~~~~~~~~~~~~~La~~l---------------~~~l~~Al~l~P~  514 (565)
                      .|.++.....++.  ..+....               ...++..++.-|+
T Consensus       101 yP~~~n~dY~~Yl--kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn  148 (254)
T COG4105         101 YPTHPNADYAYYL--KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN  148 (254)
T ss_pred             CCCCCChhHHHHH--HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence            9999976443321  1222222               5677788888887

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.60  E-value=0.0049  Score=62.45  Aligned_cols=63  Identities=24%  Similarity=0.221  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      ......|......|+.++|..+|+.|+.++|++++++..+|+.....++.-+|-.+|-+|+..
T Consensus       117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti  179 (472)
T KOG3824|consen  117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI  179 (472)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence            334566777788999999999999999999999999999999999999999999999999543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.58  E-value=0.047  Score=48.16  Aligned_cols=105  Identities=15%  Similarity=0.097  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          372 LIALSVKFLSKGDKERPIPLLQLALNKEPD------------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~------------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      .+-.|...++.|.+++|..-+++|.+....            |+-.|..|+..+...|+|+|++...++|+.--...++-
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            345567778899999999999999885432            46789999999999999999999999997542222332


Q ss_pred             CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      +.. .....+.+.+..+.++...|+.+||+..|+.+..
T Consensus        92 ~qd-eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   92 HQD-EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             TST-HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccc-cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            222 2233445778889999999999999999998443

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.56  E-value=0.02  Score=63.02  Aligned_cols=88  Identities=27%  Similarity=0.256  Sum_probs=68.0

Q ss_pred             CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008435          382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR  461 (565)
Q Consensus       382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~  461 (565)
                      ..+.++|.+.++...+..|+.+-.++..|.++...|+.++|++.|++++...        .+........++-+|.++..
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--------~~~~Ql~~l~~~El~w~~~~  317 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ--------SEWKQLHHLCYFELAWCHMF  317 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--------hhHHhHHHHHHHHHHHHHHH
Confidence            3455678888999999999999999999999999999999999999986321        11122222356679999999


Q ss_pred             cCCHHHHHHHHHHHhh
Q 008435          462 QEKWEEGIAHLERIGN  477 (565)
Q Consensus       462 ~g~~~eAi~~leraa~  477 (565)
                      +.+|++|.+++.++..
T Consensus       318 ~~~w~~A~~~f~~L~~  333 (468)
T PF10300_consen  318 QHDWEEAAEYFLRLLK  333 (468)
T ss_pred             HchHHHHHHHHHHHHh
Confidence            9999999999999433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.51  E-value=0.022  Score=52.00  Aligned_cols=93  Identities=27%  Similarity=0.271  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD----------------------NINALILMGQTQLQKGLLEEAVEYLEC  428 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~----------------------~a~A~~~LG~~~~~~g~~~eA~~~~~r  428 (565)
                      .++..|......|+.++++..+++++.+..+                      ...+...++..+...|++++|+..+++
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            4455666677788888888888888886633                      244677788888899999999999999


Q ss_pred             HHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          429 AISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       429 Al~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      ++..     +|.+.       .++..+-.+|...|+..+|+++|++.
T Consensus        88 ~l~~-----dP~~E-------~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   88 ALAL-----DPYDE-------EAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHH-----STT-H-------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHhc-----CCCCH-------HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            9765     45433       35777889999999999999999993

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03077 Protein ECB2; Provisional

Probab=96.40  E-value=0.029  Score=66.46  Aligned_cols=86  Identities=14%  Similarity=0.128  Sum_probs=63.7

Q ss_pred             HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHH
Q 008435          375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW  454 (565)
Q Consensus       375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~  454 (565)
                      +-..+.+.|+.++|...|++.    +.|...|..+...|.+.|+.++|++.|++..+.   ...|+..        .+..
T Consensus       530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~~--------T~~~  594 (857)
T PLN03077        530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES---GVNPDEV--------TFIS  594 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCcc--------cHHH
Confidence            345677788999998888876    667888999999999999999999999987542   1234322        2333


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 008435          455 SGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       455 lG~a~~~~g~~~eAi~~lera  475 (565)
                      +-.++.+.|+.++|.++|+++
T Consensus       595 ll~a~~~~g~v~ea~~~f~~M  615 (857)
T PLN03077        595 LLCACSRSGMVTQGLEYFHSM  615 (857)
T ss_pred             HHHHHhhcChHHHHHHHHHHH
Confidence            445678888888888888884

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.34  E-value=0.051  Score=64.55  Aligned_cols=101  Identities=17%  Similarity=0.100  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN-----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~-----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      +.....|..+...|++++|...++++++..+..     ..++..+|.++...|++++|..+++++++..   ....   .
T Consensus       453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~---~~~g---~  526 (903)
T PRK04841        453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA---RQHD---V  526 (903)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---hhhc---c
Confidence            344557778889999999999999999865543     2467889999999999999999999997653   0100   1


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      ......++.++|.++..+|++++|.++++++.
T Consensus       527 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  558 (903)
T PRK04841        527 YHYALWSLLQQSEILFAQGFLQAAYETQEKAF  558 (903)
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            11222356778999999999999999999843

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.31  E-value=0.015  Score=67.15  Aligned_cols=93  Identities=18%  Similarity=0.052  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ...+..+...+.+.|+.++|...|++..+   .|...|..|...|.+.|+.++|++.|++..+..   ..|+        
T Consensus       360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---~~Pd--------  425 (697)
T PLN03081        360 IVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG---VAPN--------  425 (697)
T ss_pred             eeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCC--------
Confidence            34455677778888999999999988754   356788899999999999999999999875431   2232        


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      ...+..+-.++.+.|+.++|.+.|+.+
T Consensus       426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m  452 (697)
T PLN03081        426 HVTFLAVLSACRYSGLSEQGWEIFQSM  452 (697)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            123444666778888888888888874

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.30  E-value=0.05  Score=55.19  Aligned_cols=106  Identities=14%  Similarity=0.131  Sum_probs=84.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC-------
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT-------  440 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~-------  440 (565)
                      +++.+...|..+++.|++++|++-|+.|++..--++..-+.++.++++.|+++.|+++....|+.. +...|.       
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG-~r~HPElgIGm~t  221 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERG-IRQHPELGIGMTT  221 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh-hhcCCccCcccee
Confidence            688889999999999999999999999999999999999999999999999999999999998875 333331       


Q ss_pred             ---Chh--------hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          441 ---EPE--------AIDLLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       441 ---~~~--------~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                         |..        .......+...-+.++++.|+++.|.+.+..
T Consensus       222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD  266 (459)
T KOG4340|consen  222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD  266 (459)
T ss_pred             ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence               000        0111223444456678999999999998765

>PLN03077 Protein ECB2; Provisional

Probab=96.28  E-value=0.06  Score=63.81  Aligned_cols=132  Identities=14%  Similarity=0.194  Sum_probs=90.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALN--KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~--~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      .|...+..+...+...|+.++|+.+|++..+  ..|+...... +=..+.+.|+.++|.++|++..+..  ...|+    
T Consensus       552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~-ll~a~~~~g~v~ea~~~f~~M~~~~--gi~P~----  624 (857)
T PLN03077        552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS-LLCACSRSGMVTQGLEYFHSMEEKY--SITPN----  624 (857)
T ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH-HHHHHhhcChHHHHHHHHHHHHHHh--CCCCc----
Confidence            3556677777888999999999999999887  4577666444 4456889999999999999986331  11221    


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH------HHHHHHHHhcCCCcH
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------ANITFLIFATSPSII  516 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------~~~l~~Al~l~P~~~  516 (565)
                          ...|..+..++.+.|+++||.+.+++. . ..|+. ..+.    +++.-....      ....++.++++|+..
T Consensus       625 ----~~~y~~lv~~l~r~G~~~eA~~~~~~m-~-~~pd~-~~~~----aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~  691 (857)
T PLN03077        625 ----LKHYACVVDLLGRAGKLTEAYNFINKM-P-ITPDP-AVWG----ALLNACRIHRHVELGELAAQHIFELDPNSV  691 (857)
T ss_pred             ----hHHHHHHHHHHHhCCCHHHHHHHHHHC-C-CCCCH-HHHH----HHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence                134566888999999999999999993 2 34442 2211    211111111      556788889999854

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.26  E-value=0.026  Score=54.00  Aligned_cols=96  Identities=16%  Similarity=0.176  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      ..+++|-.+.+.+++++|+..++.++..-.+.   .-+-..||.+..+.|++|+|+..+....+             ...
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-------------~~w  157 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-------------ESW  157 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-------------ccH
Confidence            45678888999999999999999999755443   55778999999999999999998877621             111


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKE  480 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~  480 (565)
                      ........|.++...|+-++|++.|++ +...+
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~k-Al~~~  189 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEK-ALESD  189 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHH-HHHcc
Confidence            222234489999999999999999999 54444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.25  E-value=0.0051  Score=42.01  Aligned_cols=34  Identities=26%  Similarity=0.264  Sum_probs=28.0

Q ss_pred             HHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHH
Q 008435          425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIA  470 (565)
Q Consensus       425 ~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~  470 (565)
                      +|+|||++     +|+++       .+++++|.+|...|++++|++
T Consensus         1 ~y~kAie~-----~P~n~-------~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL-----NPNNA-------EAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH-----CCCCH-------HHHHHHHHHHHHCcCHHhhcC
Confidence            47889765     57765       579999999999999999974

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.24  E-value=0.034  Score=64.25  Aligned_cols=94  Identities=11%  Similarity=-0.007  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      +...+......+.+.|++++|...++..++.. +.+...+..|...|.+.|+.++|.+.|++..+       |+      
T Consensus       324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~d------  390 (697)
T PLN03081        324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-------KN------  390 (697)
T ss_pred             CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-------CC------
Confidence            34556666777788888888888888888876 66778888888888888998888888887721       11      


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                        ...|..+..+|.+.|+.++|++.|+++.
T Consensus       391 --~~t~n~lI~~y~~~G~~~~A~~lf~~M~  418 (697)
T PLN03081        391 --LISWNALIAGYGNHGRGTKAVEMFERMI  418 (697)
T ss_pred             --eeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              1246668889999999999999999944

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.23  E-value=0.018  Score=52.58  Aligned_cols=64  Identities=30%  Similarity=0.325  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL  433 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~  433 (565)
                      .....++..+...|++++|+..+++++..||.+-.+|..+-.+|...|+..+|++.|++..+..
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l  126 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL  126 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            3455667778889999999999999999999999999999999999999999999999996654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.0093  Score=58.64  Aligned_cols=77  Identities=22%  Similarity=0.156  Sum_probs=71.0

Q ss_pred             hhhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435          357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL  433 (565)
Q Consensus       357 ~~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~  433 (565)
                      .|.++|-..|+.+.-+...|..+++.++++.+..-.++|++++|+.+.+++.+|....+...+++|+..++||.++.
T Consensus        32 ~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   32 CYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            45778888888888888999999999999999999999999999999999999999999999999999999997763

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.21  E-value=0.055  Score=56.27  Aligned_cols=103  Identities=12%  Similarity=0.038  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      +....|.+++..+.++++++.|++|+...-++      -.++..||.++.+..++++|+.+..+|.++- -...-+|. .
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv-~s~~l~d~-~  201 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV-NSYGLKDW-S  201 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH-HhcCcCch-h
Confidence            34458888999999999999999999976655      3478899999999999999999999997763 11111111 1


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      .-.-..+.+.+++++..+|+...|.++.+++
T Consensus       202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea  232 (518)
T KOG1941|consen  202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEA  232 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            1122346788999999999999999999983

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.18  E-value=0.081  Score=62.85  Aligned_cols=103  Identities=13%  Similarity=0.082  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      ....+|..+...|++++|...++++++.....      ..++..+|.++...|++++|.++++++++...-.+.+.    
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~----  568 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ----  568 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc----
Confidence            34567888889999999999999999754321      35677889999999999999999999987531111110    


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      .......+..+|.++...|++++|.+.++++..
T Consensus       569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~  601 (903)
T PRK04841        569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE  601 (903)
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence            011112345678889999999999999999433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.17  E-value=0.0099  Score=40.98  Aligned_cols=28  Identities=39%  Similarity=0.488  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          405 ALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       405 A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +|..||.+|...|++++|+++|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999998754

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.029  Score=55.41  Aligned_cols=100  Identities=18%  Similarity=0.097  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHh--------hCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALN--------KEPDN----------INALILMGQTQLQKGLLEEAVEYLECAIS  431 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~--------~dP~~----------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~  431 (565)
                      ..+-+.|..++..|++.||...|+.|+.        ..|.+          ...+.++.+++...|+|=|++++....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            4577899999999999999999998853        34554          45678899999999999999999999965


Q ss_pred             hhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       432 l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                      .     +|++.       .|++..|.++..-=+.+||.+-|.+ +.+++|.
T Consensus       259 ~-----~~~nv-------KA~frRakAhaa~Wn~~eA~~D~~~-vL~ldps  296 (329)
T KOG0545|consen  259 H-----HPGNV-------KAYFRRAKAHAAVWNEAEAKADLQK-VLELDPS  296 (329)
T ss_pred             c-----CCchH-------HHHHHHHHHHHhhcCHHHHHHHHHH-HHhcChh
Confidence            3     34433       5788899999999999999999999 5556554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.08  Score=58.15  Aligned_cols=57  Identities=18%  Similarity=0.169  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEY  425 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~  425 (565)
                      .++++..-..+...|++++|+....+.+...|++..|.+.-=.++.+.++|++|+..
T Consensus        12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~   68 (652)
T KOG2376|consen   12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKL   68 (652)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHH
Confidence            355555556666667777777777777777777777666666666666666666643

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.06  E-value=0.085  Score=60.39  Aligned_cols=106  Identities=23%  Similarity=0.265  Sum_probs=77.0

Q ss_pred             HHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHH
Q 008435          377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG  456 (565)
Q Consensus       377 ~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG  456 (565)
                      ......+++.+|.....+.++..|+-..|...-|.++.+.|+.+||..+++.. ..    ..++|    +   .....+-
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~----~~~~D----~---~tLq~l~   84 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEAL-YG----LKGTD----D---LTLQFLQ   84 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-cc----CCCCc----h---HHHHHHH
Confidence            44567788889999999999999999999999999999999999999776554 11    12221    1   2344577


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHH
Q 008435          457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV  496 (565)
Q Consensus       457 ~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~  496 (565)
                      .+|.++|++|+|...|++ +...+|. -+...+++.+++.
T Consensus        85 ~~y~d~~~~d~~~~~Ye~-~~~~~P~-eell~~lFmayvR  122 (932)
T KOG2053|consen   85 NVYRDLGKLDEAVHLYER-ANQKYPS-EELLYHLFMAYVR  122 (932)
T ss_pred             HHHHHHhhhhHHHHHHHH-HHhhCCc-HHHHHHHHHHHHH
Confidence            889999999999999999 6667777 3333444444433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.04  E-value=0.0068  Score=62.42  Aligned_cols=93  Identities=18%  Similarity=0.187  Sum_probs=79.6

Q ss_pred             HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHH
Q 008435          373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS  452 (565)
Q Consensus       373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~  452 (565)
                      -.+|...+..|.+++|+++|.+|+.++|..+..|...|.++..++++..|+.-+..|+++     +|+..       .-|
T Consensus       118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-----n~Dsa-------~~y  185 (377)
T KOG1308|consen  118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-----NPDSA-------KGY  185 (377)
T ss_pred             HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc-----Ccccc-------ccc
Confidence            345667788999999999999999999999999999999999999999999999999664     45433       124


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          453 QWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       453 ~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      -+.|.++..+|++++|...++.+..
T Consensus       186 kfrg~A~rllg~~e~aa~dl~~a~k  210 (377)
T KOG1308|consen  186 KFRGYAERLLGNWEEAAHDLALACK  210 (377)
T ss_pred             chhhHHHHHhhchHHHHHHHHHHHh
Confidence            4578999999999999999999544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.96  E-value=0.21  Score=48.78  Aligned_cols=103  Identities=15%  Similarity=0.192  Sum_probs=77.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       362 ~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      ++..|.-|+.+--+|.-+...|+++.|.+.|+..+++||.+-.|+.+.|..++.-|++.-|.+-+.+-     ...||+|
T Consensus        92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f-----YQ~D~~D  166 (297)
T COG4785          92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF-----YQDDPND  166 (297)
T ss_pred             hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH-----HhcCCCC
Confidence            33345568888899999999999999999999999999999999999999999999999998888776     3446665


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      |     + + ..|+=.. ...-+..+|...+.+=+.
T Consensus       167 P-----f-R-~LWLYl~-E~k~dP~~A~tnL~qR~~  194 (297)
T COG4785         167 P-----F-R-SLWLYLN-EQKLDPKQAKTNLKQRAE  194 (297)
T ss_pred             h-----H-H-HHHHHHH-HhhCCHHHHHHHHHHHHH
Confidence            5     1 1 1222222 344466777765544244

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.94  E-value=0.17  Score=46.30  Aligned_cols=137  Identities=23%  Similarity=0.247  Sum_probs=90.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQ-TQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~-~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      ....+...+......+++++++..+++++..++++.......+. ++...|++++|...|++++..     +|.    ..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~----~~  164 (291)
T COG0457          94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL-----DPE----LN  164 (291)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC----cc
Confidence            45667778888888888999999999999988888777777777 899999999999999999542     221    00


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-CchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE-EPKSKAHYYDGLVVLARYV--ANITFLIFATSPS  514 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~-~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~  514 (565)
                      .........+..+...+++++|+..+++ +....+. ...........+...+...  ...+.+++...|.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         165 ELAEALLALGALLEALGRYEEALELLEK-ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             chHHHHHHhhhHHHHhcCHHHHHHHHHH-HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            1112334455557888899999999999 5445545 2222111111111111011  6777888888886

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.91  E-value=0.085  Score=54.40  Aligned_cols=110  Identities=13%  Similarity=0.038  Sum_probs=82.8

Q ss_pred             HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH-HHH
Q 008435          373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL-IVA  451 (565)
Q Consensus       373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~-~~a  451 (565)
                      -..|.-+.+.|-|++|++..++|+++||.+.-+.+.++-++...|+++|+.+..++--.         +-...+.. ..-
T Consensus       179 GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted---------~Wr~s~mlasHN  249 (491)
T KOG2610|consen  179 GMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED---------DWRQSWMLASHN  249 (491)
T ss_pred             HHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhccc---------chhhhhHHHhhh
Confidence            34556678899999999999999999999999999999999999999999998877611         11111111 112


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH-HhhccCCCCchhhhhhh
Q 008435          452 SQWSGVACIRQEKWEEGIAHLER-IGNLKEPEEPKSKAHYY  491 (565)
Q Consensus       452 ~~~lG~a~~~~g~~~eAi~~ler-aa~~l~P~~~~~~~~~~  491 (565)
                      |..-+.++.+.++|+.|.+.|++ +..+++.+|......|.
T Consensus       250 yWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da~a~~~~l  290 (491)
T KOG2610|consen  250 YWHTALFHIEGAEYEKALEIYDREIWKRLEKDDAVARDVYL  290 (491)
T ss_pred             hHHHHHhhhcccchhHHHHHHHHHHHHHhhccchhhhhhhh
Confidence            33467788889999999999997 34566767775544444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.81  E-value=0.021  Score=38.27  Aligned_cols=30  Identities=37%  Similarity=0.409  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +++|+.+|.++...|++++|+++|++++++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            468999999999999999999999999875

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.77  E-value=0.11  Score=53.17  Aligned_cols=132  Identities=14%  Similarity=0.057  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~-g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      ++.......+.+..++|...|++|++..+-+...|...|.+.... ++.+.|...|+++++..     |.+.   +    
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~~---~----   71 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSDP---D----   71 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-H---H----
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCCH---H----
Confidence            444444455556688999999999977777899999999997775 55555999999998763     3322   1    


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH------HHHHHHHHhcCCCcHH
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------ANITFLIFATSPSIIN  517 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------~~~l~~Al~l~P~~~~  517 (565)
                      .+......+...|+.+.|...||++...+ |.+.... ...+.++..-..+      .+..+++.+.-|+...
T Consensus        72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-~~~~~~~-~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   72 FWLEYLDFLIKLNDINNARALFERAISSL-PKEKQSK-KIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHCCTS-SCHHHCH-HHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-CchhHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            12223355678999999999999955543 3333101 1122222222222      4556666666666433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.72  E-value=0.052  Score=56.44  Aligned_cols=103  Identities=14%  Similarity=0.121  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN-----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~-----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      +.+..++.......++.+++.+-+..+.+-..+     ..++..+|..+.-.+.+++++++|++|++..+...||     
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~-----  158 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA-----  158 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc-----
Confidence            455566666666667778888777777754333     3678889999999999999999999998753111111     


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL  478 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~  478 (565)
                       -.-..++..+|..+.+..|+++|.-+..+++..
T Consensus       159 -~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l  191 (518)
T KOG1941|consen  159 -MLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL  191 (518)
T ss_pred             -eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence             111236777999999999999999999995553

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=95.63  E-value=0.1  Score=58.07  Aligned_cols=113  Identities=12%  Similarity=0.026  Sum_probs=89.8

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+.|...|+.++-++..|..+-..|++++|...++.|-.+|+.|-.....-+..+.+.|+.++|++....-.+..   .+
T Consensus       218 d~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~---~~  294 (517)
T PF12569_consen  218 DKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED---VD  294 (517)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC---CC
Confidence            357888888999999999999999999999999999999999999999999999999999999999887763211   01


Q ss_pred             CCChhhhhHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHh
Q 008435          439 PTEPEAIDLLIVASQ--WSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       439 P~~~~~~~~~~~a~~--~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      |..  +.....-.|+  --|.+|.++|++..|+..|..+.
T Consensus       295 ~~~--~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  295 PLS--NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             ccc--CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            210  1111111333  27889999999999999988743

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.60  E-value=0.062  Score=59.19  Aligned_cols=100  Identities=12%  Similarity=0.029  Sum_probs=79.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPD----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~----~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      |.++--++..|..+..+|+.++|++.|++++....+    ..-.++.+|.++..+++|++|.++|.+..+..        
T Consensus       264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--------  335 (468)
T PF10300_consen  264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--------  335 (468)
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--------
Confidence            346888999999999999999999999999853333    24578999999999999999999999996531        


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHh
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKW-------EEGIAHLERIG  476 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~-------~eAi~~leraa  476 (565)
                         .+....-.|..|.|+...|+.       ++|.+.|+++-
T Consensus       336 ---~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  336 ---KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             ---ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence               122222245588899999999       88999988843

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.59  E-value=0.0099  Score=39.90  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN  402 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~  402 (565)
                      +.++.+|..+...|++++|+..|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            568899999999999999999999999999964

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.49  E-value=0.46  Score=43.36  Aligned_cols=134  Identities=26%  Similarity=0.319  Sum_probs=95.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALN--KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~--~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      ........+..+...+++.++...+..++.  ..+.....+...|..+...+++++|++.+++++..     ++.+.   
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---  129 (291)
T COG0457          58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-----DPDPD---  129 (291)
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-----CCCcc---
Confidence            355677888889999999999999999998  89999999999999999999999999999999643     22211   


Q ss_pred             hHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHhhccCCC-CchhhhhhhhHHH--HHHHHH--HHHHHHHHhcCCC
Q 008435          446 DLLIVASQWSGV-ACIRQEKWEEGIAHLERIGNLKEPE-EPKSKAHYYDGLV--VLARYV--ANITFLIFATSPS  514 (565)
Q Consensus       446 ~~~~~a~~~lG~-a~~~~g~~~eAi~~leraa~~l~P~-~~~~~~~~~~~~~--~La~~l--~~~l~~Al~l~P~  514 (565)
                          ......+. ++...|++++|...++++ ...+|. .......+.....  ..+...  ...+.+++...+.
T Consensus       130 ----~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         130 ----LAEALLALGALYELGDYEEALELYEKA-LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence                11223444 899999999999999995 435553 1111111111100  000111  7788888888888

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.26  E-value=0.42  Score=47.52  Aligned_cols=109  Identities=17%  Similarity=0.101  Sum_probs=70.5

Q ss_pred             CCCCCHHHHHHH-HHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008435          364 VENLTPKELIAL-SVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLA  436 (565)
Q Consensus       364 ~~~~~~~~l~~l-A~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~  436 (565)
                      ++...+...+++ +..+...+++++|..++++|.+-.-+|      +.++-..|.+.....++.|+.++|+||..+-.-.
T Consensus        25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~  104 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC  104 (308)
T ss_pred             CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            334444445555 455566789999999999999655444      4566667777778889999999999997653123


Q ss_pred             CCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435          437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK  479 (565)
Q Consensus       437 ~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l  479 (565)
                      |.|+-+      ..+....|.+ .+..+.++|++.|++++...
T Consensus       105 GspdtA------AmaleKAak~-lenv~Pd~AlqlYqralavv  140 (308)
T KOG1585|consen  105 GSPDTA------AMALEKAAKA-LENVKPDDALQLYQRALAVV  140 (308)
T ss_pred             CCcchH------HHHHHHHHHH-hhcCCHHHHHHHHHHHHHHH
Confidence            444311      1222222332 46677888888888855433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.26  E-value=0.19  Score=42.37  Aligned_cols=44  Identities=30%  Similarity=0.401  Sum_probs=39.1

Q ss_pred             hHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435          388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS  431 (565)
Q Consensus       388 Ai~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~  431 (565)
                      .+..++++++.+|+|.++.+.+|..+...|++++|++.+-++++
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~   50 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR   50 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999864

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.15  E-value=0.37  Score=48.45  Aligned_cols=61  Identities=20%  Similarity=0.198  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-------HHHHHHHHhcCCCcHH
Q 008435          452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-------ANITFLIFATSPSIIN  517 (565)
Q Consensus       452 ~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-------~~~l~~Al~l~P~~~~  517 (565)
                      ..+.+.|+..+|+++||...++. +...++++|......    +.++...       .+.+.+....+|++.-
T Consensus       210 lnG~Av~~l~~~~~eeAe~lL~e-aL~kd~~dpetL~Nl----iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  210 LNGQAVCHLQLGRYEEAESLLEE-ALDKDAKDPETLANL----IVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HccHHHHHHHhcCHHHHHHHHHH-HHhccCCCHHHHHHH----HHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            44578899999999999999999 666778887643311    1122211       6777777788887653

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.07  E-value=0.62  Score=48.25  Aligned_cols=103  Identities=10%  Similarity=0.047  Sum_probs=80.0

Q ss_pred             HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHH
Q 008435          374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ  453 (565)
Q Consensus       374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~  453 (565)
                      ..+..+..+|++-+|-...++.|+..|.+--++-.--.++..+|+.+.-...++|++-.-       ++ +.+-....+.
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-------n~-dlp~~sYv~G  179 (491)
T KOG2610|consen  108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-------NA-DLPCYSYVHG  179 (491)
T ss_pred             hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-------CC-CCcHHHHHHH
Confidence            445566778899999999999999999999999988899999999988888999985320       22 2233333455


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       454 ~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                      .++.++.+.|-|++|.+.-++ +.++||.|.-
T Consensus       180 myaFgL~E~g~y~dAEk~A~r-alqiN~~D~W  210 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADR-ALQINRFDCW  210 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHh-hccCCCcchH
Confidence            577888999999999999999 7778888763

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.05  E-value=0.16  Score=47.37  Aligned_cols=85  Identities=18%  Similarity=0.148  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      ..+.+.....+..++.+++..+++..-.+.|+.++.-..-|.++..+|+|.+|+..++.+.+.     .|..+       
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-----~~~~p-------   78 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-----APGFP-------   78 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----CCCCh-------
Confidence            346677777788999999999999999999999999999999999999999999999998432     22222       


Q ss_pred             HHHHHHHHHHHHcCCHH
Q 008435          450 VASQWSGVACIRQEKWE  466 (565)
Q Consensus       450 ~a~~~lG~a~~~~g~~~  466 (565)
                      .+...++.|+..+|+.+
T Consensus        79 ~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   79 YAKALLALCLYALGDPS   95 (160)
T ss_pred             HHHHHHHHHHHHcCChH
Confidence            23344778888888743

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.04  E-value=1.1  Score=43.05  Aligned_cols=133  Identities=13%  Similarity=0.085  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~---A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +...|+......+.+.. +.....++....++....   +-..++..+...|++++|+..++.++..      |.   +.
T Consensus        53 AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~------t~---De  122 (207)
T COG2976          53 ASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ------TK---DE  122 (207)
T ss_pred             HHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc------ch---hH
Confidence            44567777777776666 888888888998877754   4456778888999999999999999642      32   33


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch-hhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK-SKAHYYDGLVVLARYV--ANITFLIFATSPS  514 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~-~~~~~~~~~~~La~~l--~~~l~~Al~l~P~  514 (565)
                      .....+...++.+...+|++|+|...++. ..  ++.... ......+.++..|..-  +..|++++..+++
T Consensus       123 ~lk~l~~lRLArvq~q~~k~D~AL~~L~t-~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         123 NLKALAALRLARVQLQQKKADAALKTLDT-IK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence            44445677899999999999999999987 32  222111 1111122333333222  7888999888644

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.93  E-value=0.45  Score=42.93  Aligned_cols=65  Identities=23%  Similarity=0.174  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                      +-.-|......|+.++|++.|.+++.+.     |..+       .+|.+.+.++.-+|+.++|++-++++...-+|.
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~-----P~ra-------SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLA-----PERA-------SAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhc-----ccch-------HhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            3456888889999999999999997653     5433       367789999999999999999999965554544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.85  E-value=0.65  Score=55.83  Aligned_cols=132  Identities=17%  Similarity=0.106  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHH
Q 008435          372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA  451 (565)
Q Consensus       372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a  451 (565)
                      +..+.-.|...+++++|.++|++.++..-+....|...|..++++.+-++|.+.+.||++.+     |.. +..    ..
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-----Pk~-eHv----~~ 1602 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-----PKQ-EHV----EF 1602 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-----chh-hhH----HH
Confidence            44556667778899999999999999999999999999999999999999999999997654     431 111    12


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435          452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPS  514 (565)
Q Consensus       452 ~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~  514 (565)
                      .-..++..++.|+.+.++..|+- .....|...+.|.-|.+.-+..+..-  +..|+|++.++=.
T Consensus      1603 IskfAqLEFk~GDaeRGRtlfEg-ll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEG-LLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             HHHHHHHHhhcCCchhhHHHHHH-HHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            23356778999999999999999 66677777766655544333222211  7889999987743

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.58  E-value=0.025  Score=37.36  Aligned_cols=28  Identities=29%  Similarity=0.452  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435          404 NALILMGQTQLQKGLLEEAVEYLECAIS  431 (565)
Q Consensus       404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~  431 (565)
                      +|++.+|.++...|++++|++.|++.++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3566677777777777777777776654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.45  E-value=0.049  Score=35.90  Aligned_cols=31  Identities=16%  Similarity=0.170  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                      +++++|.++...|++++|++.|++ +....|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~-~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQR-LIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-HHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHH-HHHHCcC
Confidence            578899999999999999999999 5545554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.34  E-value=0.23  Score=50.85  Aligned_cols=108  Identities=18%  Similarity=0.062  Sum_probs=76.6

Q ss_pred             CCHHHHHHHHHHHHH-CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          367 LTPKELIALSVKFLS-KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~-~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      .+-+.+...|..... .++.+.|...|+++++..|++...|......+...|+.+.|...|+++++..     |.+. . 
T Consensus        33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~-~-  105 (280)
T PF05843_consen   33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEK-Q-  105 (280)
T ss_dssp             S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHH-H-
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----Cchh-H-
Confidence            355677888888777 4555559999999999999999999999999999999999999999996542     2111 0 


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                        ....|......-...|+.+...+..+| +....|++.
T Consensus       106 --~~~iw~~~i~fE~~~Gdl~~v~~v~~R-~~~~~~~~~  141 (280)
T PF05843_consen  106 --SKKIWKKFIEFESKYGDLESVRKVEKR-AEELFPEDN  141 (280)
T ss_dssp             --CHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHTTTS-
T ss_pred             --HHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHhhhhh
Confidence              111233344455778999999999999 555666654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.04  E-value=1.8  Score=46.13  Aligned_cols=100  Identities=21%  Similarity=0.232  Sum_probs=72.0

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh------hcC---CCC---------ChhhhhHHHHHH
Q 008435          391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF------LAG---HPT---------EPEAIDLLIVAS  452 (565)
Q Consensus       391 ~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~------l~~---~P~---------~~~~~~~~~~a~  452 (565)
                      .+-..|+.+|.+++++..++.++.++|+.+.|.+..+||+-...      ...   ++.         ..++. .+..+.
T Consensus        28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR-~fflal  106 (360)
T PF04910_consen   28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR-QFFLAL  106 (360)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch-HHHHHH
Confidence            34455799999999999999999999999999999999965430      100   111         11111 223456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhccCCC-Cchhhhhhhh
Q 008435          453 QWSGVACIRQEKWEEGIAHLERIGNLKEPE-EPKSKAHYYD  492 (565)
Q Consensus       453 ~~lG~a~~~~g~~~eAi~~leraa~~l~P~-~~~~~~~~~~  492 (565)
                      +.....+.+.|.+..|.++.+= +..++|. ||-......+
T Consensus       107 ~r~i~~L~~RG~~rTAlE~~Kl-LlsLdp~~DP~g~ll~ID  146 (360)
T PF04910_consen  107 FRYIQSLGRRGCWRTALEWCKL-LLSLDPDEDPLGVLLFID  146 (360)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHH-HHhcCCCCCcchhHHHHH
Confidence            6677788999999999999877 7779998 8865443333

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.95  E-value=0.33  Score=39.76  Aligned_cols=64  Identities=16%  Similarity=0.267  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT---QLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~---~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +....+.|..++...+.++|+..++++|+..++..+-+..+|.+   |...|++.+.+++.-+=+++
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999998888888876   56778888888776655443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.80  E-value=1.2  Score=47.47  Aligned_cols=62  Identities=18%  Similarity=0.263  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHH---CCCCCchHHHHHH-HHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q 008435          369 PKELIALSVKFLS---KGDKERPIPLLQL-ALNKEPDNINALILMGQTQLQK---------GLLEEAVEYLECAI  430 (565)
Q Consensus       369 ~~~l~~lA~~l~~---~g~~~eAi~~l~~-AL~~dP~~a~A~~~LG~~~~~~---------g~~~eA~~~~~rAl  430 (565)
                      ....++.|.++.+   .|+.++|+..+.+ ....++.+++.+..+|.+|-..         ...++|+++|+++-
T Consensus       179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF  253 (374)
T PF13281_consen  179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF  253 (374)
T ss_pred             hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence            4556777888888   8999999999999 5567788999999999998643         24689999999994

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.80  E-value=0.14  Score=35.48  Aligned_cols=31  Identities=32%  Similarity=0.300  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISKL  433 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~  433 (565)
                      +.++..+|.+|...|++++|+++++++++..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4678999999999999999999999998763

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=93.75  E-value=0.13  Score=38.87  Aligned_cols=42  Identities=26%  Similarity=0.240  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT  412 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~  412 (565)
                      -+|.+|..+...|++++|..+.+.+|+.+|+|..|......+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            467889999999999999999999999999998887665544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.58  E-value=0.058  Score=37.07  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHH--hhCCCCH
Q 008435          372 LIALSVKFLSKGDKERPIPLLQLAL--NKEPDNI  403 (565)
Q Consensus       372 l~~lA~~l~~~g~~~eAi~~l~~AL--~~dP~~a  403 (565)
                      +..+|..+.+.|++++|+.+|+++|  ..+|++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~~   35 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALARDPEDR   35 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-H
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCC
Confidence            6789999999999999999999954  5666553

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.57  E-value=1.2  Score=47.11  Aligned_cols=134  Identities=19%  Similarity=0.190  Sum_probs=80.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT--QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~--~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      .+-..+..+...+-.|++++|.+.|+..+. ||.-- -....|..  ..+.|..+.|..|.++|-++.     |+-+   
T Consensus       119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~A-----p~l~---  188 (531)
T COG3898         119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKA-----PQLP---  188 (531)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-----cCCc---
Confidence            344556677788889999999999986653 55432 22222222  346789999999999995542     3321   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--hhccCCCCchhhhhhhhHHHHHHHHH--------HHHHHHHHhcCCCc
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERI--GNLKEPEEPKSKAHYYDGLVVLARYV--------ANITFLIFATSPSI  515 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~lera--a~~l~P~~~~~~~~~~~~~~~La~~l--------~~~l~~Al~l~P~~  515 (565)
                          .+....-...+..|++|.|++..+..  ....+++..+...  .-.+...+..+        .+...+++++.|++
T Consensus       189 ----WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r--AvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdl  262 (531)
T COG3898         189 ----WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSR--AVLLTAKAMSLLDADPASARDDALEANKLAPDL  262 (531)
T ss_pred             ----hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHH--HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Confidence                22223344568999999999998862  2233433332111  00111111111        67778888999986


Q ss_pred             HH
Q 008435          516 IN  517 (565)
Q Consensus       516 ~~  517 (565)
                      ..
T Consensus       263 vP  264 (531)
T COG3898         263 VP  264 (531)
T ss_pred             ch
Confidence            53

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.51  E-value=0.78  Score=51.68  Aligned_cols=122  Identities=19%  Similarity=0.102  Sum_probs=87.6

Q ss_pred             CHHHHHHHHHHHHHC-----CCCCchHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHh
Q 008435          368 TPKELIALSVKFLSK-----GDKERPIPLLQLALN-----KEPDNINALILMGQTQLQKG-----LLEEAVEYLECAISK  432 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~-----g~~~eAi~~l~~AL~-----~dP~~a~A~~~LG~~~~~~g-----~~~eA~~~~~rAl~l  432 (565)
                      +....+.+|..+...     +|.++|+.+++.+.+     ..-.++.+.+.+|.+|.+..     +.+.|..+|.+|.+.
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~  322 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL  322 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence            455566777776543     588899999999977     22237779999999999854     678899999999543


Q ss_pred             hhhcCCCCChhhhhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--------
Q 008435          433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQE---KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--------  501 (565)
Q Consensus       433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g---~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--------  501 (565)
                          ++|          .+.+.+|.++....   +..+|.++|..++..   .+       .++.+.++.++        
T Consensus       323 ----g~~----------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~---G~-------~~A~~~la~~y~~G~gv~r  378 (552)
T KOG1550|consen  323 ----GNP----------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA---GH-------ILAIYRLALCYELGLGVER  378 (552)
T ss_pred             ----CCc----------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---CC-------hHHHHHHHHHHHhCCCcCC
Confidence                222          35677899987655   578999999996552   12       23344555555        


Q ss_pred             -----HHHHHHHHhcCC
Q 008435          502 -----ANITFLIFATSP  513 (565)
Q Consensus       502 -----~~~l~~Al~l~P  513 (565)
                           ..+++++.+.++
T Consensus       379 ~~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  379 NLELAFAYYKKAAEKGN  395 (552)
T ss_pred             CHHHHHHHHHHHHHccC
Confidence                 788999998884

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.47  E-value=0.41  Score=44.13  Aligned_cols=84  Identities=15%  Similarity=0.090  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      .+.+.....+..++.+++..++...--+-|+.++....-|.++...|+|+||+..++...+.     .+.       ...
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-----~~~-------~p~   79 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS-----AGA-------PPY   79 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-----CCC-------chH
Confidence            35566666677999999999999999999999999999999999999999999999998431     111       112


Q ss_pred             HHHHHHHHHHHcCCHH
Q 008435          451 ASQWSGVACIRQEKWE  466 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~  466 (565)
                      +...++.|+.-+||.+
T Consensus        80 ~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        80 GKALLALCLNAKGDAE   95 (153)
T ss_pred             HHHHHHHHHHhcCChH
Confidence            3344777888888743

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.43  E-value=1.1  Score=45.21  Aligned_cols=105  Identities=22%  Similarity=0.147  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHH----CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          370 KELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       370 ~~l~~lA~~l~~----~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      ..+.++|..+..    .+++.+|.-.|+..-++.|-.+.....++.+.+.+|+|+||...++.|+..     +++++   
T Consensus       170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-----d~~dp---  241 (299)
T KOG3081|consen  170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-----DAKDP---  241 (299)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-----cCCCH---
Confidence            345556666543    357889999999999999999999999999999999999999999999653     45443   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                          .++.++-.+-..+|.-+++.+-+-.-.....|+++-+
T Consensus       242 ----etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  242 ----ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             ----HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence                3455677777888988887775443266667777644

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.26  E-value=0.36  Score=49.20  Aligned_cols=85  Identities=15%  Similarity=0.153  Sum_probs=67.1

Q ss_pred             HHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008435          378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV  457 (565)
Q Consensus       378 ~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~  457 (565)
                      .+....++++|++++.--.+.+|.+--++..||.+|+...+|.+|.++|++.-.+     .|...       .-.+.-+.
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-----~P~~~-------qYrlY~AQ   86 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-----HPELE-------QYRLYQAQ   86 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ChHHH-------HHHHHHHH
Confidence            3477889999999999999999999999999999999999999999999998432     23211       11233456


Q ss_pred             HHHHcCCHHHHHHHHHH
Q 008435          458 ACIRQEKWEEGIAHLER  474 (565)
Q Consensus       458 a~~~~g~~~eAi~~ler  474 (565)
                      .+++.+.+.+|+.....
T Consensus        87 SLY~A~i~ADALrV~~~  103 (459)
T KOG4340|consen   87 SLYKACIYADALRVAFL  103 (459)
T ss_pred             HHHHhcccHHHHHHHHH
Confidence            67777888888777665

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.17  E-value=0.73  Score=46.33  Aligned_cols=125  Identities=16%  Similarity=0.135  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHH----hhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLAL----NKE--PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL----~~d--P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      +.-.-.+|....+-||.+.|..++++.-    .+|  -++..++-+++.++.-.+++.+|...|.+.+..     ||.++
T Consensus       212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~-----D~~~~  286 (366)
T KOG2796|consen  212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM-----DPRNA  286 (366)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc-----CCCch
Confidence            4456678888999999999999999443    233  345667788888888999999999999999643     45444


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHHHHHHHHHHh
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFA  510 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l~~~l~~Al~  510 (565)
                             .+..+-+.|+...|+..+|++.++. +....|......    ...+++...++-+|-++.+
T Consensus       287 -------~a~NnKALcllYlg~l~DAiK~~e~-~~~~~P~~~l~e----s~~~nL~tmyEL~Ys~~~~  342 (366)
T KOG2796|consen  287 -------VANNNKALCLLYLGKLKDALKQLEA-MVQQDPRHYLHE----SVLFNLTTMYELEYSRSMQ  342 (366)
T ss_pred             -------hhhchHHHHHHHHHHHHHHHHHHHH-HhccCCccchhh----hHHHHHHHHHHHHhhhhhh
Confidence                   2344577899999999999999999 665666654321    1233455544333444333

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.03  E-value=1.7  Score=52.57  Aligned_cols=124  Identities=15%  Similarity=0.023  Sum_probs=69.0

Q ss_pred             CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh---------------------
Q 008435          385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE---------------------  443 (565)
Q Consensus       385 ~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~---------------------  443 (565)
                      ..+..+-|++.+.-+||++-.|...=.-+.+.++.++|.+.++||+...    |+++.+                     
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI----N~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTI----NFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC----CcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence            3344555666666666666666666555666666666666666665431    222110                     


Q ss_pred             ----------hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhc
Q 008435          444 ----------AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFAT  511 (565)
Q Consensus       444 ----------~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l  511 (565)
                                ..+. ..+|..|.-+|...+++++|.++|+..+...- +....|..|.+.+...-...  .+.+++|++-
T Consensus      1516 l~kVFeRAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred             HHHHHHHHHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence                      0010 02345577788888999999999988665322 44444443333222211111  5677788877


Q ss_pred             CCC
Q 008435          512 SPS  514 (565)
Q Consensus       512 ~P~  514 (565)
                      =|.
T Consensus      1594 lPk 1596 (1710)
T KOG1070|consen 1594 LPK 1596 (1710)
T ss_pred             cch
Confidence            776

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=92.97  E-value=0.11  Score=50.90  Aligned_cols=56  Identities=20%  Similarity=0.251  Sum_probs=51.8

Q ss_pred             HHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       377 ~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      ....+.++.+.|.++|.+|+++.|+....|+.+|....+.|+++.|...|++.+++
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l   58 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL   58 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence            34567889999999999999999999999999999999999999999999999665

>smart00028 TPR Tetratricopeptide repeats

Probab=92.81  E-value=0.089  Score=32.99  Aligned_cols=28  Identities=39%  Similarity=0.557  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435          404 NALILMGQTQLQKGLLEEAVEYLECAIS  431 (565)
Q Consensus       404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~  431 (565)
                      .+++.+|.++...|++++|+.+|+++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            4567777777777777777777777754

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.74  E-value=1.1  Score=42.64  Aligned_cols=99  Identities=16%  Similarity=0.142  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      ..+..+|..+.+-|+.++|++.|.++.+..-..   .+.+..+=.+....++++....+.++|-...   ....+   .+
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~---~~~~d---~~  110 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI---EKGGD---WE  110 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---hccch---HH
Confidence            446789999999999999999999988865432   5677778888889999999999999995542   11221   12


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      ..+.....-|..+..+++|.+|.+.|-.
T Consensus       111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~  138 (177)
T PF10602_consen  111 RRNRLKVYEGLANLAQRDFKEAAELFLD  138 (177)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence            2222344578888999999999999977

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>smart00028 TPR Tetratricopeptide repeats

Probab=92.44  E-value=0.22  Score=31.02  Aligned_cols=31  Identities=19%  Similarity=0.264  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                      ++..+|.++...|++++|+..+++ +...+|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~-~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEK-ALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHH-HHccCCC
Confidence            467799999999999999999999 5545554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=92.30  E-value=2.6  Score=43.76  Aligned_cols=101  Identities=11%  Similarity=0.165  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--hc--------CCC
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF--LA--------GHP  439 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~--l~--------~~P  439 (565)
                      ++..+.|   -++.+..+-++....||++||+++.||..|+.-  ...-..+|+..+++|++...  +.        +..
T Consensus       188 ~eIMQ~A---WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~  262 (556)
T KOG3807|consen  188 DEIMQKA---WRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQ  262 (556)
T ss_pred             HHHHHHH---HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc
Confidence            3445554   456677778899999999999999999998864  33457889999999877531  00        000


Q ss_pred             CChh---hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          440 TEPE---AIDLLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       440 ~~~~---~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      .|..   +........-.++.|..++|+..||++.++.+
T Consensus       263 ~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL  301 (556)
T KOG3807|consen  263 HEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDL  301 (556)
T ss_pred             hhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            0110   11111112334888999999999999999983

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.99  E-value=1.2  Score=43.82  Aligned_cols=92  Identities=17%  Similarity=0.085  Sum_probs=58.2

Q ss_pred             CCCCchHHHHHHHHh----hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----hcCCCCChhhhhHHHHH
Q 008435          383 GDKERPIPLLQLALN----KEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLF----LAGHPTEPEAIDLLIVA  451 (565)
Q Consensus       383 g~~~eAi~~l~~AL~----~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~----l~~~P~~~~~~~~~~~a  451 (565)
                      ..+++|++.|.-|+-    ...++   +..+..+|++|...|+.++...++++|++.-.    -...|....+   ....
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~---~~~l  167 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD---EATL  167 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch---HHHH
Confidence            345566666665543    22222   67788999999999986555555555544320    1122222111   1235


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          452 SQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       452 ~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      .+.+|..+.+.|++++|+.+|.++..
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            67799999999999999999999544

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=91.92  E-value=0.76  Score=47.58  Aligned_cols=94  Identities=14%  Similarity=0.117  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      ++.+-+.|..++..++|..|+..|.+.|...-.|    +..|.+.+-+....|+|..|+.-..+|+.     .+|++.  
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~-----~~P~h~--  153 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK-----LKPTHL--  153 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-----cCcchh--
Confidence            6677889999999999999999999999966544    56788899999999999999999999954     456544  


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                           .+++.-+.|+..++++++|..+.+.
T Consensus       154 -----Ka~~R~Akc~~eLe~~~~a~nw~ee  178 (390)
T KOG0551|consen  154 -----KAYIRGAKCLLELERFAEAVNWCEE  178 (390)
T ss_pred             -----hhhhhhhHHHHHHHHHHHHHHHHhh
Confidence                 4566677899999999999999988

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.90  E-value=0.15  Score=52.80  Aligned_cols=71  Identities=20%  Similarity=0.151  Sum_probs=61.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       362 ~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      |...+.++.-+...|.+++..++...|++-+..|++++|+.+.-|-..|+....+|+|++|...++.|.++
T Consensus       141 i~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  141 IELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             cccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            33334455566677888999999999999999999999999999999999999999999999999999664

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=91.65  E-value=6.8  Score=45.54  Aligned_cols=92  Identities=16%  Similarity=0.159  Sum_probs=71.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      |.........|..+.+.|+.++|..+++..-...++|-..+-.+-.+|...|+.++|..+|++++..     +|. .   
T Consensus        40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-----~P~-e---  110 (932)
T KOG2053|consen   40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-----YPS-E---  110 (932)
T ss_pred             CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----CCc-H---
Confidence            3356778888999999999999999998888888999999999999999999999999999999654     343 1   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHH
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIA  470 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~  470 (565)
                          +-.+.+=.+|.+-++|.+=.+
T Consensus       111 ----ell~~lFmayvR~~~yk~qQk  131 (932)
T KOG2053|consen  111 ----ELLYHLFMAYVREKSYKKQQK  131 (932)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHH
Confidence                112234456666666655333

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.52  E-value=0.31  Score=52.67  Aligned_cols=120  Identities=13%  Similarity=0.062  Sum_probs=85.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHH-HhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-h-hh-
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLA-LNKEPD--------NINALILMGQTQLQKGLLEEAVEYLECAISK-L-FL-  435 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~A-L~~dP~--------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l-~-~l-  435 (565)
                      ++..++..+...+..|++.+|.+++... +...|.        .--+|.+||.++++.|.|.-+..+|.+|++- . .+ 
T Consensus       239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~  318 (696)
T KOG2471|consen  239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR  318 (696)
T ss_pred             CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence            5667888888999999999999887654 445555        2346789999999999999999999999851 1 11 


Q ss_pred             ---cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          436 ---AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       436 ---~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                         .+.|...-......+..|+.|..|...|+.-+|.+.|.++.. ..-.+|..|.
T Consensus       319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~-vfh~nPrlWL  373 (696)
T KOG2471|consen  319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH-VFHRNPRLWL  373 (696)
T ss_pred             ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH-HHhcCcHHHH
Confidence               111110001111234688999999999999999999999443 4445665433

>PRK10941 hypothetical protein; Provisional

Probab=91.36  E-value=0.68  Score=47.20  Aligned_cols=60  Identities=13%  Similarity=0.106  Sum_probs=54.7

Q ss_pred             HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435          374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL  433 (565)
Q Consensus       374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~  433 (565)
                      .+=..+.+.+++++|+++.++.+..+|+++.-+-..|.+|.+.|.+..|..-++.-++..
T Consensus       186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            455567889999999999999999999999999999999999999999999999997653

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.33  E-value=12  Score=35.62  Aligned_cols=60  Identities=12%  Similarity=0.076  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECAI  430 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~--a~A~~~LG~~~~~~g~~~eA~~~~~rAl  430 (565)
                      +-|..|..+.+.++.++|+..|...-.-.-++  .-|....|-+..+.|+-++|+.+|..+-
T Consensus        60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia  121 (221)
T COG4649          60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA  121 (221)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence            46688888999999999999998876655444  4577888999999999999999999883

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.16  E-value=2.9  Score=39.07  Aligned_cols=99  Identities=19%  Similarity=0.235  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                      ..++..+..+-.+.++.++++..+... .    .+.|+.++       ....-|..+...|++++|+..|+. +....|.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~AL-r----vLRP~~~e-------~~~~~~~l~i~r~~w~dA~rlLr~-l~~~~~~   76 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDAL-R----VLRPEFPE-------LDLFDGWLHIVRGDWDDALRLLRE-LEERAPG   76 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHH-H----HhCCCchH-------HHHHHHHHHHHhCCHHHHHHHHHH-HhccCCC
Confidence            456677777888889999999888655 2    34576542       233468889999999999999999 6666777


Q ss_pred             CchhhhhhhhHHHHHHHHH-HHHHHHHHhcCCC
Q 008435          483 EPKSKAHYYDGLVVLARYV-ANITFLIFATSPS  514 (565)
Q Consensus       483 ~~~~~~~~~~~~~~La~~l-~~~l~~Al~l~P~  514 (565)
                      .+-.+..+..++..++... ..+..++++..++
T Consensus        77 ~p~~kALlA~CL~~~~D~~Wr~~A~evle~~~d  109 (160)
T PF09613_consen   77 FPYAKALLALCLYALGDPSWRRYADEVLESGAD  109 (160)
T ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Confidence            7654442222222222111 6677777777654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.89  E-value=12  Score=40.83  Aligned_cols=123  Identities=15%  Similarity=0.060  Sum_probs=83.3

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH---HHcCCHHH
Q 008435          391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC---IRQEKWEE  467 (565)
Q Consensus       391 ~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~---~~~g~~~e  467 (565)
                      .|++-++.+|.|.++|+..=.+-...|+.++-.+.|+|||..-     |...+....-...|.|+--++   ...++.+.
T Consensus       310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-----pp~~ekr~W~RYIYLWinYalyeEle~ed~er  384 (677)
T KOG1915|consen  310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-----PPASEKRYWRRYIYLWINYALYEELEAEDVER  384 (677)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            5788899999999999999999999999999999999997531     221112222223556655554   56888999


Q ss_pred             HHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhh
Q 008435          468 GIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVS  522 (565)
Q Consensus       468 Ai~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~  522 (565)
                      +.+.|+. +..+-|+..-   -+...++..+.+.         .+.+..|+..-|..+.+.+-+
T Consensus       385 tr~vyq~-~l~lIPHkkF---tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI  444 (677)
T KOG1915|consen  385 TRQVYQA-CLDLIPHKKF---TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI  444 (677)
T ss_pred             HHHHHHH-HHhhcCcccc---hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH
Confidence            9999988 5557676432   2223333444333         667777777888765544433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=90.82  E-value=0.69  Score=50.47  Aligned_cols=106  Identities=13%  Similarity=0.009  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ++-..+.|...+..+....|+..|.++++..|+....+.+.+.++++.++..++..+++-....  +.+||       ..
T Consensus       374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~A--lrln~-------s~  444 (758)
T KOG1310|consen  374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVA--LRLNP-------SI  444 (758)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhh--ccCCh-------HH
Confidence            4444555555555567778999999999999999999999999999998777666666554322  22232       23


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      ..+|++++.++.+++++.||++.... +...+|.|.
T Consensus       445 ~kah~~la~aL~el~r~~eal~~~~a-lq~~~Ptd~  479 (758)
T KOG1310|consen  445 QKAHFRLARALNELTRYLEALSCHWA-LQMSFPTDV  479 (758)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhhhHHH-HhhcCchhh
Confidence            46899999999999999999998877 777777544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.77  E-value=0.29  Score=31.07  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          404 NALILMGQTQLQKGLLEEAVEYLEC  428 (565)
Q Consensus       404 ~A~~~LG~~~~~~g~~~eA~~~~~r  428 (565)
                      .+++.+|.++...|++++|+..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            5778899999999999999988764

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.76  E-value=1.8  Score=36.57  Aligned_cols=56  Identities=25%  Similarity=0.249  Sum_probs=46.2

Q ss_pred             HHHHCCCCCchHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435          378 KFLSKGDKERPIPLLQLALNKEPD---------NINALILMGQTQLQKGLLEEAVEYLECAISKL  433 (565)
Q Consensus       378 ~l~~~g~~~eAi~~l~~AL~~dP~---------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~  433 (565)
                      ...+.|++.+|++.+.+..+....         ...+...+|.++...|++++|++.+++|+++.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            457789999998888888764332         25678899999999999999999999998863

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.69  E-value=9.3  Score=39.58  Aligned_cols=115  Identities=15%  Similarity=0.085  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC--C---
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEP----DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH--P---  439 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP----~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~--P---  439 (565)
                      ...+...+......|+++.|...+.++...++    ..+.+.+..+.+....|+..+|+..++..++.. +..+  +   
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~-~~~~~~~~~~  224 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR-LSKNIDSISN  224 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhccccccH
Confidence            55678888889999999999999999998663    257888999999999999999999999988722 1111  0   


Q ss_pred             ----------------C--ChhhhhHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHhhccCCCCch
Q 008435          440 ----------------T--EPEAIDLLIVASQWSGVACIRQ------EKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       440 ----------------~--~~~~~~~~~~a~~~lG~a~~~~------g~~~eAi~~leraa~~l~P~~~~  485 (565)
                                      .  +.........++..+|.-....      ++.+++.+.|++ +...+|...+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~k  293 (352)
T PF02259_consen  225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE-ATKLDPSWEK  293 (352)
T ss_pred             HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHhChhHHH
Confidence                            0  1111122234566677777677      889999999999 5556666554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.68  E-value=8.7  Score=41.83  Aligned_cols=152  Identities=14%  Similarity=0.039  Sum_probs=98.3

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHH----------HcCCHHHHHHHHHHHH
Q 008435          361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQL----------QKGLLEEAVEYLECAI  430 (565)
Q Consensus       361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~----------~~g~~~eA~~~~~rAl  430 (565)
                      .++..+.|-+..+..-......|+.++-...|++|+.--|-..+-.+..-++|.          ...+.+.+.+.|+.++
T Consensus       314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l  393 (677)
T KOG1915|consen  314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL  393 (677)
T ss_pred             HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344445555666666555667799999999999999988876554444433333          3468899999999998


Q ss_pred             HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHH
Q 008435          431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLI  508 (565)
Q Consensus       431 ~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~A  508 (565)
                      ++.     |+.   .-.+...|...+.-..++.+...|.+.+-. +.-.+|.+..... |.+.-+.|..+-  ...|++-
T Consensus       394 ~lI-----PHk---kFtFaKiWlmyA~feIRq~~l~~ARkiLG~-AIG~cPK~KlFk~-YIelElqL~efDRcRkLYEkf  463 (677)
T KOG1915|consen  394 DLI-----PHK---KFTFAKIWLMYAQFEIRQLNLTGARKILGN-AIGKCPKDKLFKG-YIELELQLREFDRCRKLYEKF  463 (677)
T ss_pred             hhc-----Ccc---cchHHHHHHHHHHHHHHHcccHHHHHHHHH-HhccCCchhHHHH-HHHHHHHHhhHHHHHHHHHHH
Confidence            764     431   122223344455555788889999999998 6667887764332 222222333333  7888999


Q ss_pred             HhcCCCcHHHHHhh
Q 008435          509 FATSPSIINLLTVS  522 (565)
Q Consensus       509 l~l~P~~~~~l~~~  522 (565)
                      ++.+|..-..|...
T Consensus       464 le~~Pe~c~~W~ky  477 (677)
T KOG1915|consen  464 LEFSPENCYAWSKY  477 (677)
T ss_pred             HhcChHhhHHHHHH
Confidence            99999755444333

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=90.66  E-value=3.4  Score=45.91  Aligned_cols=155  Identities=13%  Similarity=-0.014  Sum_probs=98.7

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHH
Q 008435          389 IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEG  468 (565)
Q Consensus       389 i~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eA  468 (565)
                      -.++-.+++..|.+...|..-+.....+|+.-+|.+||.+|+-..    +|. .++.     +...+|.++.+.|...+|
T Consensus       199 ~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~----~~h-~kdi-----~lLSlaTiL~RaG~sadA  268 (886)
T KOG4507|consen  199 GHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFS----SRH-NKDI-----ALLSLATVLHRAGFSADA  268 (886)
T ss_pred             HHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhC----Ccc-cccc-----hhhhHHHHHHHcccccch
Confidence            345567888999999888888888888999999999999996431    222 2222     345588999999999999


Q ss_pred             HHHHHHHhhccCCCCchhhhhhhh--HHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhhhhhhhhhh
Q 008435          469 IAHLERIGNLKEPEEPKSKAHYYD--GLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCF  544 (565)
Q Consensus       469 i~~leraa~~l~P~~~~~~~~~~~--~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  544 (565)
                      --.+.. |....|.....  +|..  ++..++..-  ..+|..+.+.+|.+...-++....    -.|.+...+.-++-|
T Consensus       269 ~iILhA-A~~dA~~~t~n--~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~----ISC~~~L~~kleKq~  341 (886)
T KOG4507|consen  269 AVILHA-ALDDADFFTSN--YYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHA----ISCQQKLEQKLEKQH  341 (886)
T ss_pred             hheeeh-hccCCcccccc--ceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            887755 55333333322  2211  111222111  778889999999887766663322    223332223345556


Q ss_pred             ccchhHHHHHHHHHhh
Q 008435          545 FGFSVLYVMLVAMLKL  560 (565)
Q Consensus       545 ~~~~~~~~~~~~~~~~  560 (565)
                      .++-..+.++-.-||+
T Consensus       342 ~~l~~~~nE~keFqk~  357 (886)
T KOG4507|consen  342 RSLQRTLNELKEFQKQ  357 (886)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666667777666665

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=90.48  E-value=1.4  Score=38.55  Aligned_cols=58  Identities=12%  Similarity=0.217  Sum_probs=45.3

Q ss_pred             HHHHHHHCCCCCchHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHh
Q 008435          375 LSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGL-----------LEEAVEYLECAISK  432 (565)
Q Consensus       375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a---~A~~~LG~~~~~~g~-----------~~eA~~~~~rAl~l  432 (565)
                      +|..++++|++-+|++..+..+...+++.   ..+..-|.++.+...           .-.|+++|.+++.+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc
Confidence            57788999999999999999999999887   667777888765542           14567777777543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=90.39  E-value=0.52  Score=35.68  Aligned_cols=35  Identities=9%  Similarity=0.110  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      .++.++.++.++|+|++|..+.++ +...+|++.+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~-lL~~eP~N~Qa   37 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDA-LLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHH-HHHHTTS-HHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHH-HHhhCCCcHHH
Confidence            357799999999999999999999 77799998764

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=90.34  E-value=0.2  Score=54.11  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=68.3

Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008435          358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG  437 (565)
Q Consensus       358 ~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~  437 (565)
                      |-..|..++..+.-+-..+.+++..+++..|+.-+.+|++.||....+|+..|.+.+..+++.+|...|++...+     
T Consensus        27 ysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l-----  101 (476)
T KOG0376|consen   27 YSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL-----  101 (476)
T ss_pred             HHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhc-----
Confidence            344566666666666778888999999999999999999999999999999999999999999999999999543     


Q ss_pred             CCCCh
Q 008435          438 HPTEP  442 (565)
Q Consensus       438 ~P~~~  442 (565)
                      .|+++
T Consensus       102 ~Pnd~  106 (476)
T KOG0376|consen  102 APNDP  106 (476)
T ss_pred             CcCcH
Confidence            46654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=90.34  E-value=0.7  Score=51.01  Aligned_cols=94  Identities=20%  Similarity=0.205  Sum_probs=77.4

Q ss_pred             CCCCCchHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHH
Q 008435          382 KGDKERPIPLLQLALNKEPDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI  460 (565)
Q Consensus       382 ~g~~~eAi~~l~~AL~~dP~~-a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~  460 (565)
                      .|+...|++++++|+...|.. ......|+++...-|-.-+|-..+.+++.++     -.++       ..++.+|.++.
T Consensus       620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-----~sep-------l~~~~~g~~~l  687 (886)
T KOG4507|consen  620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-----SSEP-------LTFLSLGNAYL  687 (886)
T ss_pred             cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-----ccCc-------hHHHhcchhHH
Confidence            578889999999999999965 3457899999999999999999999997653     1111       34677999999


Q ss_pred             HcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          461 RQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       461 ~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                      .+.+.+.|+++|++ +..++|+++....
T Consensus       688 ~l~~i~~a~~~~~~-a~~~~~~~~~~~~  714 (886)
T KOG4507|consen  688 ALKNISGALEAFRQ-ALKLTTKCPECEN  714 (886)
T ss_pred             HHhhhHHHHHHHHH-HHhcCCCChhhHH
Confidence            99999999999999 6678999887654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=90.33  E-value=3.6  Score=42.76  Aligned_cols=78  Identities=14%  Similarity=0.090  Sum_probs=61.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      .+.-|-.-|+-|+...+|..|+++|.++|+..  ..      +++....-|.+.+.|....|+|-.|+.-..+ +...+|
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k--c~------D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~-al~~~P  150 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK--CA------DPDLNAVLYTNRAAAQLYLGNYRSALNDCSA-ALKLKP  150 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc--CC------CccHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHhcCc
Confidence            35667778999999999999999999998753  22      2333334577899999999999999999999 777899


Q ss_pred             CCchhhh
Q 008435          482 EEPKSKA  488 (565)
Q Consensus       482 ~~~~~~~  488 (565)
                      .+.+...
T Consensus       151 ~h~Ka~~  157 (390)
T KOG0551|consen  151 THLKAYI  157 (390)
T ss_pred             chhhhhh
Confidence            8886543

>PRK10941 hypothetical protein; Provisional

Probab=90.13  E-value=1.3  Score=45.15  Aligned_cols=70  Identities=17%  Similarity=0.172  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435          404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE  483 (565)
Q Consensus       404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~  483 (565)
                      +-..++=.+|.+.+++++|+.+.++.+.+     +|+++..       +--.|.+|.++|.+..|..-++. ....+|++
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~dp~e-------~RDRGll~~qL~c~~~A~~DL~~-fl~~~P~d  248 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQF-----DPEDPYE-------IRDRGLIYAQLDCEHVALSDLSY-FVEQCPED  248 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHh-----CCCCHHH-------HHHHHHHHHHcCCcHHHHHHHHH-HHHhCCCc
Confidence            34566778899999999999999999654     5776521       22279999999999999999999 66689999


Q ss_pred             chh
Q 008435          484 PKS  486 (565)
Q Consensus       484 ~~~  486 (565)
                      |..
T Consensus       249 p~a  251 (269)
T PRK10941        249 PIS  251 (269)
T ss_pred             hhH
Confidence            965

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=90.10  E-value=6  Score=35.24  Aligned_cols=71  Identities=20%  Similarity=0.124  Sum_probs=44.6

Q ss_pred             HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh-HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          403 INALILMGQT--QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID-LLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       403 a~A~~~LG~~--~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~-~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      +.+|..|+..  ..+.|-|++|.+.+++|.+.. -..-|.+.=+.+ .....|.+|.-++..+|+|++++..-++
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~s-rtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~   80 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVS-RTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADR   80 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH-TTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-ccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            3456666655  446689999999999997753 111122211111 1223567788899999999999888777

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=89.00  E-value=4.5  Score=44.27  Aligned_cols=61  Identities=15%  Similarity=0.071  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD--NINALILMGQTQLQKGLLEEAVEYLECA  429 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~--~a~A~~~LG~~~~~~g~~~eA~~~~~rA  429 (565)
                      ...-..+|..+-+.|+.+||++.++..++.+|.  +-.++++|-.++...++++|+...+.|-
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            455567888889999999999999999998876  5779999999999999999998888775

The molecular function of this protein is uncertain.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.62  E-value=7.5  Score=37.00  Aligned_cols=65  Identities=18%  Similarity=0.011  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      -.++..+|..|.+.|+.++|+++|.++.+..         .........++.+-.+....|+++....+.+++-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYC---------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4688999999999999999999999985421         1112223345555667788999999999999943

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.57  E-value=12  Score=37.41  Aligned_cols=112  Identities=15%  Similarity=0.063  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHC-CCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          371 ELIALSVKFLSK-GDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       371 ~l~~lA~~l~~~-g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      -....|..+... .++++|+.+|++|-+-..+.      -..+...+....+.|+|.+|++.|++...-. + .++-   
T Consensus       115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s-~-~n~L---  189 (288)
T KOG1586|consen  115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS-L-DNNL---  189 (288)
T ss_pred             hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-cchH---
Confidence            345566666554 78899999999998755443      3356667777888999999999999986431 1 1110   


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                      .-...-.-.+..|.|+.-..+.-.+...+++ ...++|.....+.
T Consensus       190 LKys~KdyflkAgLChl~~~D~v~a~~ALek-y~~~dP~F~dsRE  233 (288)
T KOG1586|consen  190 LKYSAKDYFLKAGLCHLCKADEVNAQRALEK-YQELDPAFTDSRE  233 (288)
T ss_pred             HHhHHHHHHHHHHHHhHhcccHHHHHHHHHH-HHhcCCcccccHH
Confidence            0000001134478888888888888889999 7778998876544

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=88.42  E-value=5.2  Score=44.50  Aligned_cols=105  Identities=21%  Similarity=0.118  Sum_probs=79.0

Q ss_pred             HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhhhhcCCCCChhhhhHHHHHHH
Q 008435          375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLEC-AISKLFLAGHPTEPEAIDLLIVASQ  453 (565)
Q Consensus       375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~r-Al~l~~l~~~P~~~~~~~~~~~a~~  453 (565)
                      +...+...++...+.-.++.++..||+++.++.+||......|....+...+.. +..     ..|++.+....... ++
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~-~~  146 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEW-----LSPDNAEFLGHLIR-FY  146 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----cCcchHHHHhhHHH-HH
Confidence            355556677888899999999999999999999999999988877666655555 532     34555433333333 33


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       454 ~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      .+|.....+|+.+++...+++ +..+.|.+++.
T Consensus       147 ~~~~~~~~l~~~~~~~~~l~~-~~d~~p~~~~~  178 (620)
T COG3914         147 QLGRYLKLLGRTAEAELALER-AVDLLPKYPRV  178 (620)
T ss_pred             HHHHHHHHhccHHHHHHHHHH-HHHhhhhhhhh
Confidence            378888999999999999999 66788888754

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.42  E-value=4.1  Score=41.74  Aligned_cols=41  Identities=27%  Similarity=0.367  Sum_probs=36.0

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       392 l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +++.+..||+|.++-+.++..+...|+.++|.+++-..++.
T Consensus       225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45557789999999999999999999999999998887654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=88.31  E-value=0.82  Score=38.53  Aligned_cols=71  Identities=15%  Similarity=0.047  Sum_probs=50.4

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECA  429 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~--a~A~~~LG~~~~~~g~~~eA~~~~~rA  429 (565)
                      ..++...+.|.+..+.+|..+...|++++|++.+-.+++.|+++  ..+.-.|=.++...|.-+.-...|+|-
T Consensus        12 ~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRk   84 (90)
T PF14561_consen   12 EAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRK   84 (90)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            34555667789999999999999999999999999999999887  555555555666666555555555554

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.94  E-value=0.9  Score=45.76  Aligned_cols=43  Identities=19%  Similarity=0.081  Sum_probs=39.6

Q ss_pred             hHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435          388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI  430 (565)
Q Consensus       388 Ai~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl  430 (565)
                      |+.+|++|+.+.|++...|+.||.++...|+.=+|+-+|-|++
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl   43 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL   43 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999996

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.93  E-value=1.6  Score=44.57  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      ...+.+++..+...|+++.++..+++.+..||.+-.+|..+=..|.+.|+...|+..|++.-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3456788888999999999999999999999999999999999999999999999999998553

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=87.77  E-value=13  Score=43.47  Aligned_cols=101  Identities=19%  Similarity=0.146  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD---------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~---------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      |.-....|+.+....++++|..++.++...-|.         .+++....|.+....|++++|++..+.+++..     |
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L-----~  489 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL-----P  489 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----c
Confidence            555678899999999999999999988775544         35677788999999999999999999998764     2


Q ss_pred             CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      .+. . ..-..+...+|.+..-.|++++|..+.++ +.
T Consensus       490 ~~~-~-~~r~~~~sv~~~a~~~~G~~~~Al~~~~~-a~  524 (894)
T COG2909         490 EAA-Y-RSRIVALSVLGEAAHIRGELTQALALMQQ-AE  524 (894)
T ss_pred             ccc-c-hhhhhhhhhhhHHHHHhchHHHHHHHHHH-HH
Confidence            211 0 11122456689999999999999999988 54

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=87.46  E-value=7.5  Score=39.64  Aligned_cols=105  Identities=20%  Similarity=0.240  Sum_probs=69.2

Q ss_pred             HHCCCCCchHHHHHHHHhh----CCCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhh-c-CCCCChhhhhHH
Q 008435          380 LSKGDKERPIPLLQLALNK----EPDN----INALILMGQTQLQKG-LLEEAVEYLECAISKLFL-A-GHPTEPEAIDLL  448 (565)
Q Consensus       380 ~~~g~~~eAi~~l~~AL~~----dP~~----a~A~~~LG~~~~~~g-~~~eA~~~~~rAl~l~~l-~-~~P~~~~~~~~~  448 (565)
                      ..+||.+.|..++.|+-..    +|+.    ++.+|+.|.-....+ ++++|..++++|.+.... . .+...++..+..
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            5689999999999988554    4554    567888888889999 999999999999886311 0 111112122233


Q ss_pred             HHHHHHHHHHHHHcCCHHH---HHHHHHHHhhccCCCCch
Q 008435          449 IVASQWSGVACIRQEKWEE---GIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~e---Ai~~leraa~~l~P~~~~  485 (565)
                      ...+..++.+|...+.++.   |...++. +....|+.+.
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~-l~~e~~~~~~  122 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRL-LESEYGNKPE  122 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHH-HHHhCCCCcH
Confidence            3356678888888777554   4555545 4444555554

It is also involved in sporulation [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=87.38  E-value=9.5  Score=38.74  Aligned_cols=122  Identities=17%  Similarity=0.138  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHC----CCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          369 PKELIALSVKFLSK----GDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       369 ~~~l~~lA~~l~~~----g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      +.....++..+...    ++..+|..+|+  ...+.+++.+.+.||.+|..    ..+..+|..+|++|.+.    +++.
T Consensus        73 ~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~----g~~~  146 (292)
T COG0790          73 AAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL----GNVE  146 (292)
T ss_pred             hHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc----CChh
Confidence            35666777776653    35677899998  56677899999999999987    45899999999999653    2221


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH------------
Q 008435          441 EPEAIDLLIVASQWSGVACIRQ-----E--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------------  501 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~-----g--~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------------  501 (565)
                      .       ..+.+.+|.+|..-     -  +..+|...|++++...   ++       ++...+|..+            
T Consensus       147 a-------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~-------~a~~~lg~~y~~G~Gv~~d~~~  209 (292)
T COG0790         147 A-------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NP-------DAQLLLGRMYEKGLGVPRDLKK  209 (292)
T ss_pred             H-------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CH-------HHHHHHHHHHHcCCCCCcCHHH
Confidence            0       12355577766553     2  2347999999966543   22       2223555444            


Q ss_pred             -HHHHHHHHhcCC
Q 008435          502 -ANITFLIFATSP  513 (565)
Q Consensus       502 -~~~l~~Al~l~P  513 (565)
                       ..+|+++.+...
T Consensus       210 A~~wy~~Aa~~g~  222 (292)
T COG0790         210 AFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHHHHHHHCCC
Confidence             678888887765

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=87.37  E-value=33  Score=36.70  Aligned_cols=137  Identities=17%  Similarity=0.120  Sum_probs=87.8

Q ss_pred             HHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---------------------hhcCC
Q 008435          380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL---------------------FLAGH  438 (565)
Q Consensus       380 ~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~---------------------~l~~~  438 (565)
                      ...|+.+.|+.+-++|-++.|.-..++...=.-..+.|+|+.|++..+...+..                     .++-+
T Consensus       165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad  244 (531)
T COG3898         165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD  244 (531)
T ss_pred             HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence            457999999999999999999999999888888899999999999987664432                     11223


Q ss_pred             CCChhhhhH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-HHHHHHHH
Q 008435          439 PTEPEAIDL--------LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-ANITFLIF  509 (565)
Q Consensus       439 P~~~~~~~~--------~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-~~~l~~Al  509 (565)
                      |....+...        +.-+-...+.++++.|+.-++-..+|.+-. .+|+ |.....|..+...-...- .+-.++..
T Consensus       245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK-~ePH-P~ia~lY~~ar~gdta~dRlkRa~~L~  322 (531)
T COG3898         245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK-AEPH-PDIALLYVRARSGDTALDRLKRAKKLE  322 (531)
T ss_pred             hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh-cCCC-hHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            322111100        011223356788999999999999999544 4444 322222211110000000 56667777


Q ss_pred             hcCCCcHHH
Q 008435          510 ATSPSIINL  518 (565)
Q Consensus       510 ~l~P~~~~~  518 (565)
                      .+.|++.+-
T Consensus       323 slk~nnaes  331 (531)
T COG3898         323 SLKPNNAES  331 (531)
T ss_pred             hcCccchHH
Confidence            788887763

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.06  E-value=4.5  Score=40.44  Aligned_cols=146  Identities=10%  Similarity=0.032  Sum_probs=84.5

Q ss_pred             hcccchhhhHHhhhhhHHHHHHHHHhcCHHHHhHhCCCCCCCCCCCCCCccccccccCCCCchhhhcCCCCCCCHHHHHH
Q 008435          295 GYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIA  374 (565)
Q Consensus       295 ~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~~~rk~l~ip~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  374 (565)
                      ...+=++-.+|-=.++.|-..|..=-..-.++|..            +-.|.|                .....+.-.++
T Consensus        24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~------------~~yEnn----------------rslfhAAKayE   75 (308)
T KOG1585|consen   24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKAS------------KGYENN----------------RSLFHAAKAYE   75 (308)
T ss_pred             CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHH------------HHHHhc----------------ccHHHHHHHHH
Confidence            34667788888888887777665322222222221            011122                12233444455


Q ss_pred             HHHHH-HHCCCCCchHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          375 LSVKF-LSKGDKERPIPLLQLALNKEPD-----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       375 lA~~l-~~~g~~~eAi~~l~~AL~~dP~-----~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ++..+ .+...+.|+..++++|..+.-.     -+-.-...+-=.....++++|++.|++++++.  ..+-.+-..    
T Consensus        76 qaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavv--e~~dr~~ma----  149 (308)
T KOG1585|consen   76 QAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVV--EEDDRDQMA----  149 (308)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--hccchHHHH----
Confidence            55444 4567888899999998876532     22222222223456678999999999998763  111110001    


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      ..-+...+..+.+.++++||-..+.+
T Consensus       150 ~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  150 FELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             HHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            11233467788999999999998887

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=87.04  E-value=4.6  Score=41.07  Aligned_cols=99  Identities=11%  Similarity=0.020  Sum_probs=73.1

Q ss_pred             CCCHHHHHHHHHHHHH----CCCCCchHHHHHHHHhhCCCC-HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhh
Q 008435          366 NLTPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDN-INALILMGQTQLQK----G---LLEEAVEYLECAISKL  433 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~----~g~~~eAi~~l~~AL~~dP~~-a~A~~~LG~~~~~~----g---~~~eA~~~~~rAl~l~  433 (565)
                      .-.+...+.+|..+..    ..|..+|..+|++|.+..-.. ..+.+.+|..|..-    +   +...|...|++|-...
T Consensus       106 ~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~  185 (292)
T COG0790         106 DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG  185 (292)
T ss_pred             cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc
Confidence            3457788889988876    348889999999999885555 46689999998874    2   2347999999984321


Q ss_pred             hhcCCCCChhhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhc
Q 008435          434 FLAGHPTEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNL  478 (565)
Q Consensus       434 ~l~~~P~~~~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa~~  478 (565)
                                    ...+.+.+|.+|..    ..++++|..+|++++..
T Consensus       186 --------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~  220 (292)
T COG0790         186 --------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ  220 (292)
T ss_pred             --------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence                          12456778888755    44889999999996663

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.85  E-value=1.5  Score=43.23  Aligned_cols=63  Identities=21%  Similarity=0.305  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHCCCCC-------chHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435          369 PKELIALSVKFLSKGDKE-------RPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAIS  431 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~-------eAi~~l~~AL~~dP~------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~  431 (565)
                      +..+..+|+.+-..|+.+       +|...|++|++.+..      .....+.+|.++.+.|+++||..+|.+++.
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            556778888888888744       456666666654432      368999999999999999999999999975

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.33  E-value=0.98  Score=28.56  Aligned_cols=24  Identities=25%  Similarity=0.066  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      ++..+|.++..+|++++|..++++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            466799999999999999998864

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.29  E-value=1.3  Score=30.48  Aligned_cols=26  Identities=27%  Similarity=0.164  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      ++.++|.+|..+|++++|.++++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            46679999999999999999999944

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.18  E-value=19  Score=39.40  Aligned_cols=110  Identities=18%  Similarity=0.116  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHCC--CCCchHHHHHHHHhhCCCC---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          369 PKELIALSVKFLSKG--DKERPIPLLQLALNKEPDN---INALILMGQTQL-QKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g--~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~-~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      ++.+..+|..+...|  +..+++++++......|.+   ++.+..||.+++ ...+++.|..++++|..+.  ..-|...
T Consensus         7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~--~~ip~fy   84 (629)
T KOG2300|consen    7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLIS--KSIPSFY   84 (629)
T ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--cccccHH
Confidence            456777787777778  8889999999999988876   677888998865 5678999999999997653  2223321


Q ss_pred             hhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhccCCCCc
Q 008435          443 EAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g-~~~eAi~~leraa~~l~P~~~  484 (565)
                         +....++-.++.+|.... .++.|...+++ +.++....|
T Consensus        85 ---dvKf~a~SlLa~lh~~~~~s~~~~KalLrk-aielsq~~p  123 (629)
T KOG2300|consen   85 ---DVKFQAASLLAHLHHQLAQSFPPAKALLRK-AIELSQSVP  123 (629)
T ss_pred             ---hhhhHHHHHHHHHHHHhcCCCchHHHHHHH-HHHHhcCCc
Confidence               223345666888887777 78999999999 655666666

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=86.00  E-value=2.3  Score=43.65  Aligned_cols=59  Identities=14%  Similarity=0.165  Sum_probs=45.9

Q ss_pred             HHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435          459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVSNII  525 (565)
Q Consensus       459 ~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~~~~  525 (565)
                      ..+.|+.|+|...|+. +..+.|.+|+...       .+|.+.         -++|-+|+.++|.+.+++..-.+-
T Consensus       126 ~~~~Gk~ekA~~lfeH-AlalaP~~p~~L~-------e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEH-ALALAPTNPQILI-------EMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHhccchHHHHHHHHH-HHhcCCCCHHHHH-------HHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            3688999999999999 7779999997543       445444         578999999999998887555443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=85.91  E-value=23  Score=40.11  Aligned_cols=132  Identities=11%  Similarity=0.050  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD------------------NINALILMGQTQLQKGLLEEAVEYLECAI  430 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~------------------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl  430 (565)
                      +..+|+-|...+...+++.|..++++|...-.+                  +...|...+......|-++.-...|++.+
T Consensus       425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii  504 (835)
T KOG2047|consen  425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII  504 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            456778888888888999999999988764322                  34567778888888888888888999998


Q ss_pred             HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC--CCchhhhhhhhHHHH-HHHH-H---HH
Q 008435          431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP--EEPKSKAHYYDGLVV-LARY-V---AN  503 (565)
Q Consensus       431 ~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P--~~~~~~~~~~~~~~~-La~~-l---~~  503 (565)
                      ++.          -..  +....+.|..+.+..-+++|.+.||| ...+.+  .--+.+.-|...++. +|.. +   ..
T Consensus       505 dLr----------iaT--Pqii~NyAmfLEeh~yfeesFk~YEr-gI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd  571 (835)
T KOG2047|consen  505 DLR----------IAT--PQIIINYAMFLEEHKYFEESFKAYER-GISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD  571 (835)
T ss_pred             HHh----------cCC--HHHHHHHHHHHHhhHHHHHHHHHHHc-CCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            753          111  12234566777888889999999999 433332  222222222221111 0000 0   67


Q ss_pred             HHHHHHhcCC
Q 008435          504 ITFLIFATSP  513 (565)
Q Consensus       504 ~l~~Al~l~P  513 (565)
                      .|++|++.-|
T Consensus       572 LFEqaL~~Cp  581 (835)
T KOG2047|consen  572 LFEQALDGCP  581 (835)
T ss_pred             HHHHHHhcCC
Confidence            7788888766

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=85.08  E-value=4.6  Score=36.75  Aligned_cols=73  Identities=12%  Similarity=0.172  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435          403 INALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK  479 (565)
Q Consensus       403 a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l  479 (565)
                      ....++++.++....   +..+.+..++..++.    ..|..      ..+-.|.++..+++.|+|++|+.+.+. ..+.
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~----~~~~~------rRe~lyYLAvg~yRlkeY~~s~~yvd~-ll~~  100 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS----AHPER------RRECLYYLAVGHYRLKEYSKSLRYVDA-LLET  100 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh----cCccc------chhhhhhhHHHHHHHhhHHHHHHHHHH-HHhh
Confidence            445566777766554   457788888888531    22221      123456799999999999999999998 6778


Q ss_pred             CCCCchh
Q 008435          480 EPEEPKS  486 (565)
Q Consensus       480 ~P~~~~~  486 (565)
                      +|++.++
T Consensus       101 e~~n~Qa  107 (149)
T KOG3364|consen  101 EPNNRQA  107 (149)
T ss_pred             CCCcHHH
Confidence            8888754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=84.95  E-value=8.9  Score=44.36  Aligned_cols=79  Identities=16%  Similarity=0.098  Sum_probs=53.3

Q ss_pred             HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHH
Q 008435          374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ  453 (565)
Q Consensus       374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~  453 (565)
                      .-|....+.|..++|..+|++.-+.|        .|-.+|...|.|+||.+..+.-              +.-.+...|+
T Consensus       805 kvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~--------------DRiHLr~Tyy  862 (1416)
T KOG3617|consen  805 KVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETK--------------DRIHLRNTYY  862 (1416)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhc--------------cceehhhhHH
Confidence            44455566677777777777665543        4556667777777776654332              2223345678


Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q 008435          454 WSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       454 ~lG~a~~~~g~~~eAi~~ler  474 (565)
                      +.+.-+...++.+.|+++||+
T Consensus       863 ~yA~~Lear~Di~~AleyyEK  883 (1416)
T KOG3617|consen  863 NYAKYLEARRDIEAALEYYEK  883 (1416)
T ss_pred             HHHHHHHhhccHHHHHHHHHh
Confidence            888888899999999999999

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=84.75  E-value=3.7  Score=47.30  Aligned_cols=104  Identities=13%  Similarity=0.126  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHH----------HhhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLA----------LNKEPD----------NINALILMGQTQLQKGLLEEAVEYLECAI  430 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~A----------L~~dP~----------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl  430 (565)
                      .+++.|..+...+|.+.|+.+|+++          |..+|.          +...|-+-|+.....|+.|.|+.+|+.|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            4788888888889999999999865          666665          45567788999999999999999999993


Q ss_pred             Hhhh------hcCCCCChhhh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          431 SKLF------LAGHPTEPEAI---DLLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       431 ~l~~------l~~~P~~~~~~---~~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      .--.      ..++-+.+...   .....|-|.+|.-|...|+..+|+..|.|
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3210      12222111000   01112677899999999999999999988

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=84.74  E-value=9.8  Score=38.79  Aligned_cols=84  Identities=21%  Similarity=0.191  Sum_probs=56.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhccC------CCCchh
Q 008435          414 LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKE------PEEPKS  486 (565)
Q Consensus       414 ~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g-~~~eAi~~leraa~~l~------P~~~~~  486 (565)
                      ..+|+.+.|..+|.|+-... ...+|+   .........|+.|......+ ++++|..+++++...++      ...+..
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~-~~~~~~---~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~   79 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLL-NSLDPD---MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG   79 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHH-hcCCcH---HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence            47899999999999994432 133333   33455567899999999999 99999999999555421      223333


Q ss_pred             hhhhhhHHHHHHHHH
Q 008435          487 KAHYYDGLVVLARYV  501 (565)
Q Consensus       487 ~~~~~~~~~~La~~l  501 (565)
                      .......+..++..+
T Consensus        80 ~elr~~iL~~La~~~   94 (278)
T PF08631_consen   80 SELRLSILRLLANAY   94 (278)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444555566555

It is also involved in sporulation [].

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=84.68  E-value=13  Score=34.44  Aligned_cols=97  Identities=16%  Similarity=0.064  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       405 A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      ++...-.+....++.+++...+... .    .+.|+.++ .      ...-|..+...|+++||+..|++ .....+..|
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdAL-r----vLrP~~~e-~------d~~dg~l~i~rg~w~eA~rvlr~-l~~~~~~~p   78 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDAL-R----VLRPNLKE-L------DMFDGWLLIARGNYDEAARILRE-LLSSAGAPP   78 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH-H----HhCCCccc-c------chhHHHHHHHcCCHHHHHHHHHh-hhccCCCch
Confidence            3444445555688999998877655 2    34576552 2      22368889999999999999999 554444444


Q ss_pred             hhhhhhhhHHHHHHHHH-HHHHHHHHhcCCC
Q 008435          485 KSKAHYYDGLVVLARYV-ANITFLIFATSPS  514 (565)
Q Consensus       485 ~~~~~~~~~~~~La~~l-~~~l~~Al~l~P~  514 (565)
                      -.+..+...+..++..- ..+..++++.+++
T Consensus        79 ~~kAL~A~CL~al~Dp~Wr~~A~~~le~~~~  109 (153)
T TIGR02561        79 YGKALLALCLNAKGDAEWHVHADEVLARDAD  109 (153)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Confidence            33332211221222111 6666666666443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=84.18  E-value=22  Score=40.24  Aligned_cols=160  Identities=13%  Similarity=0.090  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh---
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE---  443 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~---  443 (565)
                      -.+..|..+-..|+.+.|...|++|...+=..    +..|..-|..-.+..+++.|....++|...      |..+.   
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v------P~~~~~~~  462 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV------PTNPELEY  462 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC------CCchhhhh
Confidence            36788989999999999999999999976443    678888888888999999999999999642      33211   


Q ss_pred             --hhh-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHH
Q 008435          444 --AID-------LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANIT  505 (565)
Q Consensus       444 --~~~-------~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l  505 (565)
                        +..       .....|..++......|-++.-...|+++.. +-=..|+...       +.|.++         .+.|
T Consensus       463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid-LriaTPqii~-------NyAmfLEeh~yfeesFk~Y  534 (835)
T KOG2047|consen  463 YDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID-LRIATPQIII-------NYAMFLEEHKYFEESFKAY  534 (835)
T ss_pred             hcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HhcCCHHHHH-------HHHHHHHhhHHHHHHHHHH
Confidence              000       0112344566777888899999999999443 3324444322       444444         4556


Q ss_pred             HHHHhcC--CCcHHHH-------------HhhhhhhHHHhhhhhhhhhhhhhhh
Q 008435          506 FLIFATS--PSIINLL-------------TVSNIIDIIYVNCYELKKKRFASCF  544 (565)
Q Consensus       506 ~~Al~l~--P~~~~~l-------------~~~~~~~~~~~~~~~~~~~~~~~~~  544 (565)
                      ++-+.+-  |..-++|             ...|++.++++.|.+.-+.-|++-.
T Consensus       535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKti  588 (835)
T KOG2047|consen  535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTI  588 (835)
T ss_pred             HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            6666655  3444444             2235666777766664444444433

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=83.42  E-value=8  Score=41.25  Aligned_cols=110  Identities=20%  Similarity=0.107  Sum_probs=67.1

Q ss_pred             CCCCHHHHHHHHHHHHH---------CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hhhh
Q 008435          365 ENLTPKELIALSVKFLS---------KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI-SKLF  434 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~---------~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl-~l~~  434 (565)
                      ++.+++.++..|..+-.         ....++|+..|+++.+.+|+. ..=.+++.++...|+..+...-.++.. .+..
T Consensus       213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~  291 (374)
T PF13281_consen  213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSS  291 (374)
T ss_pred             CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            34568888888887643         124678999999999999655 444667777777776544443344432 2211


Q ss_pred             hcCCCCChh-hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          435 LAGHPTEPE-AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       435 l~~~P~~~~-~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      +.+.-...+ ..+.  ..+..++.+..-.|++++|+++++++..
T Consensus       292 llg~kg~~~~~~dY--Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~  333 (374)
T PF13281_consen  292 LLGRKGSLEKMQDY--WDVATLLEASVLAGDYEKAIQAAEKAFK  333 (374)
T ss_pred             HHHhhccccccccH--HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence            111111110 1111  1223366777889999999999999444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=83.38  E-value=26  Score=38.98  Aligned_cols=73  Identities=12%  Similarity=0.064  Sum_probs=65.0

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      .+++...|.|.+.++.+-..+..+ .+++....|++.+...|..+++|..-..-.....+|+.-+..|.|.+..
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            567888888999998887666555 9999999999999999999999999999999999999999999999764

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=83.28  E-value=3.9  Score=44.15  Aligned_cols=58  Identities=21%  Similarity=0.238  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA  429 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA  429 (565)
                      ...+.|.=++..|+|.++.-+-.-..+++| +++++-.+|.+.+...+|+||.+++...
T Consensus       464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            345667778899999999999999999999 9999999999999999999999999877

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.00  E-value=5.8  Score=44.73  Aligned_cols=93  Identities=19%  Similarity=0.113  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHCC-----CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          371 ELIALSVKFLSKG-----DKERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       371 ~l~~lA~~l~~~g-----~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      ..+.+|..+.+..     +.+.|..++.+|-+.+  ++++.+.+|.++..-.   +...|.++|.+|....         
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---------  358 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---------  358 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---------
Confidence            5667888887754     5566999999887765  5567789999988665   5789999999995321         


Q ss_pred             hhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcc
Q 008435          443 EAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLK  479 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa~~l  479 (565)
                           ...+.++++.||..    .-+.++|..++++++..-
T Consensus       359 -----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  359 -----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             -----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence                 12467788888754    357899999999976643

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=82.96  E-value=24  Score=36.88  Aligned_cols=74  Identities=16%  Similarity=0.027  Sum_probs=53.5

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCC------------CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008435          359 QLKISVENLTPKELIALSVKFLSKG------------DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYL  426 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g------------~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~  426 (565)
                      .+++...|-|.+..+++....-..-            -.+..+..|++||+.+|++...+..+=.+..+..+.++..+-+
T Consensus         9 ~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~w   88 (321)
T PF08424_consen    9 NRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKW   88 (321)
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4555556666776666654433221            1345688999999999999998888777777887888888899


Q ss_pred             HHHHHh
Q 008435          427 ECAISK  432 (565)
Q Consensus       427 ~rAl~l  432 (565)
                      ++++..
T Consensus        89 e~~l~~   94 (321)
T PF08424_consen   89 EELLFK   94 (321)
T ss_pred             HHHHHH
Confidence            999654

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=82.58  E-value=16  Score=40.07  Aligned_cols=93  Identities=24%  Similarity=0.308  Sum_probs=55.6

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHH
Q 008435          389 IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEG  468 (565)
Q Consensus       389 i~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eA  468 (565)
                      ...|++|+...++|...|...-..-.+.+.+.+-...|.+++..     +|+++   +....+..|   -+...-+.+.|
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-----Hp~~~---dLWI~aA~w---efe~n~ni~sa  159 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-----HPNNP---DLWIYAAKW---EFEINLNIESA  159 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCc---hhHHhhhhh---HHhhccchHHH
Confidence            45677777777777777776665555556677777777777543     45544   221111111   12333337777


Q ss_pred             HHHHHHHhhccCCCCchhhhhhhhH
Q 008435          469 IAHLERIGNLKEPEEPKSKAHYYDG  493 (565)
Q Consensus       469 i~~leraa~~l~P~~~~~~~~~~~~  493 (565)
                      .+.|.+ ..+.+|+.|..+..|++-
T Consensus       160 Ralflr-gLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  160 RALFLR-GLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             HHHHHH-HhhcCCCChHHHHHHHHH
Confidence            777777 667777777665555443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=82.46  E-value=8.9  Score=32.23  Aligned_cols=61  Identities=20%  Similarity=0.104  Sum_probs=42.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       413 ~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      ..+.|++.+|.+.+.+..+..   ..-.+.........+..+++..+...|++++|++.+++++
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~---~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi   68 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYA---KQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI   68 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHH---hhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            457899999999999986542   1111110011234567789999999999999999999943

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.44  E-value=18  Score=39.52  Aligned_cols=160  Identities=17%  Similarity=0.142  Sum_probs=97.7

Q ss_pred             ccchhhhHHhhhh-hHHHHHHHHHhcCHHHHhHhCCCCCCCCCCCCCCccccccccCCCCchhhhcCCCCCCCHHHHHH-
Q 008435          297 YIPQGSLVYWVTN-SSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIA-  374 (565)
Q Consensus       297 ~~Pagl~lYW~~s-~~~sl~Q~~~l~~~~~rk~l~ip~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-  374 (565)
                      --|+...+-|+.. .+..++|-...++-.+..++..-.+..-.+=.+  +-...+..+.+|--       ++--..+.+ 
T Consensus       258 gsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q--~eklkq~d~~sril-------sm~km~~LE~  328 (629)
T KOG2300|consen  258 GSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQ--TEKLKQADLMSRIL-------SMFKMILLEH  328 (629)
T ss_pred             CCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHH--HhhcccccchhHHH-------HHHHHHHHHH
Confidence            3588889999998 999999998888765555543322210000000  00000111111100       000111122 


Q ss_pred             HHHHHHHCCCCCchHHHHHHHHh---hCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          375 LSVKFLSKGDKERPIPLLQLALN---KEPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       375 lA~~l~~~g~~~eAi~~l~~AL~---~dP~-------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      .+..-+-.|++.+|+.....+.+   ..|.       .+..++.+|.--..-+.+++|+.+|..|+++.         +.
T Consensus       329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t---------~~  399 (629)
T KOG2300|consen  329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT---------ES  399 (629)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh---------hH
Confidence            22223458999999988887766   4455       45678888888788889999999999998763         12


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      .+.......+++..|.+.|+-+.-.+.++.
T Consensus       400 ~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~  429 (629)
T KOG2300|consen  400 IDLQAFCNLNLAISYLRIGDAEDLYKALDL  429 (629)
T ss_pred             HHHHHHHHHhHHHHHHHhccHHHHHHHHHh
Confidence            333334556799999999998877777666

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.37  E-value=2.5  Score=29.63  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435          404 NALILMGQTQLQKGLLEEAVEYLECAISKL  433 (565)
Q Consensus       404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~  433 (565)
                      ++|..||.+-...++|++|++-|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            578899999999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=81.27  E-value=22  Score=39.83  Aligned_cols=124  Identities=17%  Similarity=0.043  Sum_probs=84.9

Q ss_pred             CCCCchHHHHHHHHhhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHH
Q 008435          383 GDKERPIPLLQLALNKEPDNINALILM--GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI  460 (565)
Q Consensus       383 g~~~eAi~~l~~AL~~dP~~a~A~~~L--G~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~  460 (565)
                      |...-++..+..-+..+|.+.+.+...  ...+...+..+.+.-..+.++..     ||.++       .++.++|.+..
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~-----~~~~~-------~~~~~L~~ale  112 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV-----NPENC-------PAVQNLAAALE  112 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc-----Ccccc-------hHHHHHHHHHH
Confidence            333447777777788999998875444  66777778888888888888543     45443       35667888888


Q ss_pred             HcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435          461 RQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL  519 (565)
Q Consensus       461 ~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l  519 (565)
                      ..|....+...+...+....|++.....+....+- +++..         ...+++++.+.|.+.+..
T Consensus       113 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~  179 (620)
T COG3914         113 LDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVL  179 (620)
T ss_pred             HhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence            88888888777777678888888865443322211 33222         677788888888876543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=80.87  E-value=21  Score=37.34  Aligned_cols=92  Identities=20%  Similarity=0.098  Sum_probs=63.1

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHH
Q 008435          389 IPLLQLALNKEPDNINALILMGQTQLQKGL------------LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG  456 (565)
Q Consensus       389 i~~l~~AL~~dP~~a~A~~~LG~~~~~~g~------------~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG  456 (565)
                      ..-|++.++.+|+|.++|..+.......-.            .+.-+..|+||++.     +|++.    .+   +..+-
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-----np~~~----~L---~l~~l   72 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-----NPDSE----RL---LLGYL   72 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-----CCCCH----HH---HHHHH
Confidence            356889999999999999999988765533            35567778888653     56433    11   11122


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhH
Q 008435          457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG  493 (565)
Q Consensus       457 ~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~  493 (565)
                      .+..+..+-++..+-+++ +...+|+++..+..|.+.
T Consensus        73 ~~~~~~~~~~~l~~~we~-~l~~~~~~~~LW~~yL~~  108 (321)
T PF08424_consen   73 EEGEKVWDSEKLAKKWEE-LLFKNPGSPELWREYLDF  108 (321)
T ss_pred             HHHHHhCCHHHHHHHHHH-HHHHCCCChHHHHHHHHH
Confidence            344566788888888999 566788888776655443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=80.46  E-value=2.3  Score=29.41  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHH
Q 008435          404 NALILMGQTQLQKGLLEEAVEYL  426 (565)
Q Consensus       404 ~A~~~LG~~~~~~g~~~eA~~~~  426 (565)
                      +.++.+|..+.+.|++++|++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~   24 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFF   24 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHH
Confidence            44566666666666666666663

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=80.24  E-value=3.9  Score=44.54  Aligned_cols=98  Identities=12%  Similarity=0.045  Sum_probs=70.0

Q ss_pred             HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH-HHHHHH
Q 008435          375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL-LIVASQ  453 (565)
Q Consensus       375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~-~~~a~~  453 (565)
                      ....+++..+..-+..-.+.+....-+.+.+.+..++.++..|++..|.+.+... .+   ...|..-.-+.. .-..+.
T Consensus       212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni---~~~~g~~~T~q~~~cif~N  287 (696)
T KOG2471|consen  212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS-NI---HKEAGGTITPQLSSCIFNN  287 (696)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc-cc---ccccCccccchhhhheeec
Confidence            3344567777777888888888888899999999999999999999998877654 10   011110000011 112456


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHh
Q 008435          454 WSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       454 ~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      ++|.++++.|.|..+..+|.++.
T Consensus       288 NlGcIh~~~~~y~~~~~~F~kAL  310 (696)
T KOG2471|consen  288 NLGCIHYQLGCYQASSVLFLKAL  310 (696)
T ss_pred             CcceEeeehhhHHHHHHHHHHHH
Confidence            79999999999999999999944

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	565
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	2e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 6e-11
 Identities = 65/456 (14%), Positives = 139/456 (30%), Gaps = 129/456 (28%)

Query: 100 SSLPVRALISF-LDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRL 158
           + + +   +S+ +    DF  F W  +   ++    + +L  ++ Q+           R 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDP-----NWTSRS 217

Query: 159 PPPFPPPLSGKRFVDQISLFRREKRAAGCPSLL--------WFIASFAIQVPCFLVGVTS 210
                  L       ++    + K    C  LL            +F +   C ++ +T+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLS--CKIL-LTT 272

Query: 211 IRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKEN 270
             R                F+ +T++            ++    T++ L   + +L  + 
Sbjct: 273 --R----------------FKQVTDF------------LSAATTTHISLDHHSMTLTPDE 302

Query: 271 GLLGLLAKYYKSYLNLMT--LPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK-HPASRT 327
               LL KY    L+     LP         +                   L  +P   +
Sbjct: 303 VK-SLLLKY----LDCRPQDLP--------RE------------------VLTTNPRRLS 331

Query: 328 MLGLPDKVVPAAARKPEEIDTLETTLESPAKQL----KISVENLTPKEL----IALSVKF 379
           ++              + + T +        +L    + S+  L P E       LSV F
Sbjct: 332 IIA---------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-F 381

Query: 380 LSKGDKERPIP--LLQLALNKEPDNINALILMGQTQL-QKGLLEEAVEYLECAISKLFLA 436
                    IP  LL L       +   +++    +L +  L+E+  +    +I  ++L 
Sbjct: 382 ----PPSAHIPTILLSLIWFDVIKSDVMVVV---NKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 437 GHPTEPEAIDL--LIVASQWSGVACIRQEK----WEEG-----IA-HLERIGNLKEPEEP 484
                     L   IV   ++       +     + +      I  HL+ I + +     
Sbjct: 435 LKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 485 KSKAHYYDGLVVLARYVANITFLIFATSPSIINLLT 520
           +    + D    L + + + +    A+  SI+N L 
Sbjct: 494 RMV--FLD-FRFLEQKIRHDSTAWNASG-SILNTLQ 525

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 72/539 (13%), Positives = 152/539 (28%), Gaps = 159/539 (29%)

Query: 87  LSERVIESIAGEESSL-PVRALISFL-----DTYHDFTG------FPW-WTIIVSSTVAL 133
           LS+  I+ I   + ++     L   L     +    F        + +  + I +     
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ- 104

Query: 134 RIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWF 193
                P ++ ++   QR  + L      F      K  V ++  + + ++A         
Sbjct: 105 -----PSMMTRMYIEQR--DRLYNDNQVFA-----KYNVSRLQPYLKLRQA--------- 143

Query: 194 IASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLH 253
                      L+ +   + + +DG  G    G  W        + V           + 
Sbjct: 144 -----------LLELRPAKNVLIDGVLGS---GKTWVALDVCLSYKVQ-CKMD---FKIF 185

Query: 254 YTNVQLSFGASSLGKENGLLGLLAK-YYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSF 312
           +    L+    +      +L +L K  Y+   N  +         +   S+   +     
Sbjct: 186 W----LNLK--NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--- 236

Query: 313 SIVQQLALKHPASRTMLGLPDKVVPAAARKPEEID-------TLETT-------LESPAK 358
                L    P    +L L   V     +  +  +        L TT         S A 
Sbjct: 237 -----LLKSKPYENCLLVL-LNV-----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 359 QLKISVEN----LTPKELIALSVKFLSKGDKERP------IPLLQLAL------------ 396
              IS+++    LTP E+ +L +K+L    ++ P       P   L++            
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATW 344

Query: 397 ----NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452
               +   D +  +I      L+     +   +   ++   F          + L+    
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRLSV---FPPSAHIPTILLSLI---- 395

Query: 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL----------------VV 496
            W  V  I+ +     +  L +   +++  +PK        +                 +
Sbjct: 396 -WFDV--IKSDV-MVVVNKLHKYSLVEK--QPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 497 LARYVANITFLIFATSPSIINLLTVSNIIDIIYVNC---YELKKKRFASCFFGFSVLYV 552
           +  Y    TF      P           +D  Y      + LK          F ++++
Sbjct: 450 VDHYNIPKTFDSDDLIP---------PYLDQ-YFYSHIGHHLKNIEHPERMTLFRMVFL 498

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 71/485 (14%), Positives = 145/485 (29%), Gaps = 160/485 (32%)

Query: 3   TAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHV-------HL 55
           + + +L  L++  Y   P   +   H  N  +   +     +R    +P+        ++
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 56  YHSGSAD-------------DSSVGGDGVGDRYSEVPI--------PVETVNLSERVIES 94
            ++ + +                V         + + +        P E  +L  + ++ 
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 95  IAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIV------------ 142
                  LP   L          T  P            R++++   +            
Sbjct: 314 ---RPQDLPREVL----------TTNP-----------RRLSIIAESIRDGLATWDNWKH 349

Query: 143 LQLKKIQRIAEL-LPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCP----SLLWFIASF 197
           +   K+  I E  L  L P        K F   +S+F      A  P    SL+WF    
Sbjct: 350 VNCDKLTTIIESSLNVLEPA----EYRKMFDR-LSVFPPS---AHIPTILLSLIWFDVIK 401

Query: 198 AIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVL--MAGLH-- 253
           +      +V     +   ++  P          +  T     +   +   L     LH  
Sbjct: 402 SD---VMVVVNKLHKYSLVEKQP----------KESTISIPSIYLELKVKLENEYALHRS 448

Query: 254 ----YTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQG-------- 301
               Y N+  +F +  L         L +Y+  Y          +G+++           
Sbjct: 449 IVDHY-NIPKTFDSDDLIPPY-----LDQYF--Y--------SHIGHHLKNIEHPERMTL 492

Query: 302 -SLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQL 360
             +V+      F  ++Q  ++H ++            A       ++TL+        QL
Sbjct: 493 FRMVFL----DFRFLEQ-KIRHDST------------AWNASGSILNTLQ--------QL 527

Query: 361 K-----ISVENLTPKELIALSVKFLSKGD----KERPIPLLQLALNKEPDNINALILMGQ 411
           K     I   +   + L+   + FL K +      +   LL++AL  E +   A+     
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE---AIFEEAH 584

Query: 412 TQLQK 416
            Q+Q+
Sbjct: 585 KQVQR 589

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 12/98 (12%)

Query: 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436
           +  L   +        +    KEP+   A   +G TQ +      A+  L  A       
Sbjct: 25  LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML---- 80

Query: 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474
             P +      L        V+   +      +A L  
Sbjct: 81  -DPKDIAVHAAL-------AVSHTNEHNANAALASLRA 110

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 19/96 (19%)

Query: 399 EPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454
           E +N        +  G + L+   L EA    E    K      P   EA   L      
Sbjct: 9   EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSL------ 57

Query: 455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHY 490
            G+     EK    I  L     L  P++     H 
Sbjct: 58  -GLTQAENEKDGLAIIALNHARMLD-PKDI--AVHA 89

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 18/133 (13%)

Query: 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE 424
             ++ K    L++ +    + ++     +  L K P+N++ L    + Q+ +G  ++A+ 
Sbjct: 50  SEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALR 109

Query: 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEE 483
             E  +             A   L       G       E+ ++ +    +  +      
Sbjct: 110 MYEKILQL-----EADNLAANIFL-------GNYYYLTAEQEKKKLETDYKKLSSP---- 153

Query: 484 PK-SKAHYYDGLV 495
            K   A Y DGL 
Sbjct: 154 TKMQYARYRDGLS 166

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 17/120 (14%)

Query: 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAI 430
           L A +   + +G ++  + + +  L  E DN+ A I +G          ++ +E     +
Sbjct: 91  LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150

Query: 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHY 490
           S            A           G++ +   ++E+    L+++        P ++A  
Sbjct: 151 SS-----PTKMQYARYRD-------GLSKLFTTRYEKARNSLQKVILRF----PSTEAQK 194

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 11/149 (7%), Positives = 39/149 (26%), Gaps = 33/149 (22%)

Query: 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL----------------MGQ 411
           +  E++      +  G   + +   +  +    D                       +  
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 412 TQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAH 471
              +    ++A  + +  + K      P   + ++             + + + ++ +  
Sbjct: 63  AYKKNRNYDKAYLFYKELLQK-----APNNVDCLEAC-------AEMQVCRGQEKDALRM 110

Query: 472 LERIGNLKEPEEPK-SKAHYYDGLVVLAR 499
            E+I  L+         A+ + G      
Sbjct: 111 YEKILQLE----ADNLAANIFLGNYYYLT 135

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 15/124 (12%)

Query: 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431
            + L+ +    GD E           +EPDN   L+L+     Q   L+ +  +   AI 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYY 491
           +     +P   EA   L       G     + + +E I H      LK P+      +  
Sbjct: 62  Q-----NPLLAEAYSNL-------GNVYKERGQLQEAIEHYRHALRLK-PDFI--DGYIN 106

Query: 492 DGLV 495
               
Sbjct: 107 LAAA 110

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 12/110 (10%)

Query: 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE 424
           E +  +  I+ + +  ++                   +       G  +L++G L   + 
Sbjct: 27  EEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTIL 86

Query: 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474
           ++E AI +      P + EA   L       G+     E  +  I  L+R
Sbjct: 87  FMEAAILQ-----DPGDAEAWQFL-------GITQAENENEQAAIVALQR 124

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 18/129 (13%)

Query: 350 ETTLESPAKQLKISVEN--LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALI 407
           + T+ +  K      EN            +K L +GD    I  ++ A+ ++P +  A  
Sbjct: 44  QVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQ 103

Query: 408 LMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS--GVACIRQEKW 465
            +G TQ +    + A+  L+  +        P   +A              V+       
Sbjct: 104 FLGITQAENENEQAAIVALQRCLEL-----QPNNLKA---------LMALAVSYTNTSHQ 149

Query: 466 EEGIAHLER 474
           ++    L+ 
Sbjct: 150 QDACEALKN 158

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 16/150 (10%), Positives = 44/150 (29%), Gaps = 14/150 (9%)

Query: 339 AARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNK 398
                  +     +  +      I  + +   ++ + +  F +KG  E      +     
Sbjct: 8   NESISTAVIDAINSGATLKDINAIPDDMMD--DIYSYAYDFYNKGRIEEAEVFFRFLCIY 65

Query: 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458
           +  N++ ++ +      K   ++A +    A +         +   +          G  
Sbjct: 66  DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKNDYTPVFHT-------GQC 113

Query: 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488
            +R +   +     E +      E+ K KA
Sbjct: 114 QLRLKAPLKAKECFELVIQHSNDEKLKIKA 143

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 12/142 (8%)

Query: 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK 416
            K L  S       +L      F +  +    I   Q A+  +P+       +    +  
Sbjct: 13  LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIST 72

Query: 417 GLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476
           G LE+ +E+   A+        P   +A+            A      + + +  L  + 
Sbjct: 73  GDLEKVIEFTTKALEI-----KPDHSKALLRR-------ASANESLGNFTDAMFDLSVLS 120

Query: 477 NLKEPEEPKSKAHYYDGLVVLA 498
              + +    +      L   A
Sbjct: 121 LNGDFDGASIEPMLERNLNKQA 142

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434
                L +      I LL  A   +P +  A I + Q +LQ   ++EA+E  E +     
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--- 490

Query: 435 LAGHPTEPEAIDLL 448
           LA   T  E +   
Sbjct: 491 LA--RTMDEKLQAT 502

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 17/131 (12%)

Query: 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEY 425
           + TP   I L++    K + +      Q A++  P+        GQ        + A E 
Sbjct: 273 HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332

Query: 426 LECAISKLFLAGHPTEPEA-IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484
            + A S      +P      I L             +Q K+ E  A          P  P
Sbjct: 333 FQKAQSL-----NPENVYPYIQL--------ACLLYKQGKFTESEAFFNETKLKF-PTLP 378

Query: 485 KSKAHYYDGLV 495
             +   +   +
Sbjct: 379 --EVPTFFAEI 387

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 16/100 (16%)

Query: 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436
           ++ L +GD    + L + A+ ++P ++ A   +G TQ +      A+  L   +      
Sbjct: 72  LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL---- 127

Query: 437 GHPTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLER 474
             P    A              V+   +    +    L  
Sbjct: 128 -KPDNQTA---------LMALAVSFTNESLQRQACEILRD 157

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 12/86 (13%)

Query: 389 IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448
              L+  L +  DN+     +G+T  +    + A+ +L  A+        PT   A   L
Sbjct: 5   TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYSVAWKWL 59

Query: 449 IVASQWSGVACIRQEKWEEGIAHLER 474
                  G     Q          E 
Sbjct: 60  -------GKTLQGQGDRAGARQAWES 78

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 15/104 (14%)

Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
           L +      D +  L  +G  Q Q G  ++A +  +             +      L   
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC-----MLDHYDARYFLGL--- 58

Query: 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 495
               G        +E+ +        +    EP  +  ++    
Sbjct: 59  ----GACRQSLGLYEQALQSYSYGALMD-INEP--RFPFHAAEC 95

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 13/121 (10%)

Query: 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429
           + L + ++     GD    I  L   L     +     L  +  +++G   +A+  L+ A
Sbjct: 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203

Query: 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH 489
                        EA   +            +    E  ++ +     L   +  +  AH
Sbjct: 204 SKL-----KNDNTEAFYKI-------STLYYQLGDHELSLSEVRECLKLD-QDHKRCFAH 250

Query: 490 Y 490
           Y
Sbjct: 251 Y 251

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 12/111 (10%)

Query: 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLEC 428
            ++ + L  K L+ G     +     A++ +PDN  A        L  G  + A+  L  
Sbjct: 26  VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85

Query: 429 AISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479
            I             A           G   ++Q K +E     +++    
Sbjct: 86  VIQL-----KMDFTAARLQR-------GHLLLKQGKLDEAEDDFKKVLKSN 124

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 15/96 (15%)

Query: 383 GDKERPIPLLQLAL---NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439
           G + + +P  + A+    +  D     + +G T    G   +A   L   + +      P
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FP 58

Query: 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475
                            +      ++E+G+  L +I
Sbjct: 59  NHQALRVFY-------AMVLYNLGRYEQGVELLLKI 87

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 22/127 (17%)

Query: 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLEC-- 428
           +L+    + L +G+  + + ++Q   ++     +  +      L+    E A E L    
Sbjct: 8   QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67

Query: 429 ----------AISKLFLAGHPTEPEAIDLLIVASQ----------WSGVACIRQEKWEEG 468
                      I+KL L     E   +  L                  V   +  + EE 
Sbjct: 68  LEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEA 127

Query: 469 IAHLERI 475
           +  L  I
Sbjct: 128 LELLWNI 134

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 13/121 (10%)

Query: 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429
           + L + ++      D    I  L   L     +     L  +  +++G   +A+  L+ A
Sbjct: 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180

Query: 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH 489
                        EA   +            +    E  ++ +     L   +  +  AH
Sbjct: 181 SKL-----KSDNTEAFYKI-------STLYYQLGDHELSLSEVRECLKLD-QDHKRCFAH 227

Query: 490 Y 490
           Y
Sbjct: 228 Y 228

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 16/123 (13%)

Query: 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLEC 428
            ++ + L  K L+ G     +     A++ +PDN  A        L  G  + A+  L  
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 429 AISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488
            I+            A           G   ++Q K +E     +++        P  + 
Sbjct: 63  VIAL-----KMDFTAARLQR-------GHLLLKQGKLDEAEDDFKKVLKSN----PSEQE 106

Query: 489 HYY 491
              
Sbjct: 107 EKE 109

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442
            D  R +  L+ A+   P +  A +++   +L  G        ++       LA HP  P
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRG-----LALHPGHP 57

Query: 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474
           EA+  L       G     Q++  E    L++
Sbjct: 58  EAVARL-------GRVRWTQQRHAEAAVLLQQ 82

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 34/165 (20%), Positives = 51/165 (30%), Gaps = 28/165 (16%)

Query: 339 AARKPEEIDTLETTLESPAKQLKISVENLTPKELIA---LSVKFLSKGDKERPIPLLQLA 395
            A  P E+  L   +               P++ +A   L+   L  GD       +Q  
Sbjct: 2   TADGPRELLQLRAAVR------------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRG 49

Query: 396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455
           L   P +  A+  +G+ +  +    EA   L+ A         P  P     L       
Sbjct: 50  LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APEHPGIALWL------- 97

Query: 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARY 500
           G A     + E   A   R   L  PEEP   A   +    L  +
Sbjct: 98  GHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDW 141

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 22/185 (11%), Positives = 42/185 (22%), Gaps = 21/185 (11%)

Query: 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431
           +  L     ++        LLQ A +  P++    + +G      G  E A      A  
Sbjct: 60  VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA-- 117

Query: 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYY 491
                  P EP     L+   +            +   A +                   
Sbjct: 118 ---HQLLPEEPYITAQLLNWRRRLC----DWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170

Query: 492 DGLVVLARYVANITFLIFA--TSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSV 549
           D         A       A    P     +     + + +V          ++ F     
Sbjct: 171 DASAAEQLACARTRAQAIAASVRPLAPTRVRSKGPLRVGFV----------SNGFGAHPT 220

Query: 550 LYVML 554
             + +
Sbjct: 221 GLLTV 225

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 16/118 (13%)

Query: 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL 418
             + +   +  +  +   +  L   +        +      P+   A   +G TQ +   
Sbjct: 11  PFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK 70

Query: 419 LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLER 474
              A+  L  A   L     P +             +   V+   +      +A L  
Sbjct: 71  DGLAIIALNHAR-ML----DPKDIAV---------HAALAVSHTNEHNANAALASLRA 114

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 17/92 (18%), Positives = 22/92 (23%), Gaps = 12/92 (13%)

Query: 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442
           G   +         N         +  G + L+   L EA    E           P   
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQA-----APERE 55

Query: 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474
           EA   L       G+     EK    I  L  
Sbjct: 56  EAWRSL-------GLTQAENEKDGLAIIALNH 80

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 8/108 (7%), Positives = 27/108 (25%), Gaps = 9/108 (8%)

Query: 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYL 426
           +        +       +    I +      K+ ++            +    + A + +
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 427 ECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474
           E   SK+       +    +         G   +++ +    I   + 
Sbjct: 61  ETYFSKVNA--TKAKSADFEYY-------GKILMKKGQDSLAIQQYQA 99

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 21/150 (14%), Positives = 50/150 (33%), Gaps = 19/150 (12%)

Query: 344 EEIDTLETTLESPAKQLKISVENLTPKELIA--LSVKFLSKGDKERPIPLLQLALNKEPD 401
           +     +  ++   + ++++ +N   K L+A  L        ++     L++ AL K P 
Sbjct: 186 DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG 245

Query: 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA------------IDLLI 449
             + L    +   +K   ++A+E L+ A+        P                   ++ 
Sbjct: 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEY-----IPNNAYLHCQIGCCYRAKVFQVMN 300

Query: 450 VASQWSGVACIRQEKWEEGIAHLERIGNLK 479
           +            E     +AHL++     
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEAN 330

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 31/138 (22%)

Query: 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG----------------- 417
            +  +  K + ++ I LL+ AL   P+N      +G     K                  
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312

Query: 418 --LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475
             L+  AV +L+ A        +        +L              +++EE   + ++ 
Sbjct: 313 LELIGHAVAHLKKADEA-----NDNLFRVCSIL-------ASLHALADQYEEAEYYFQKE 360

Query: 476 GNLKEPEEPKSKAHYYDG 493
            + +     K   H   G
Sbjct: 361 FSKELTPVAKQLLHLRYG 378

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 13/98 (13%)

Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
           + +      D +  L  +   Q Q G  E+A    +             +      L   
Sbjct: 10  IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGL--- 61

Query: 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH 489
               G       +++  I        +    EP+   H
Sbjct: 62  ----GACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFH 94

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 18/142 (12%)

Query: 354 ESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQ 413
            + A   +IS + L   +L +L+      G  E    + Q     +  +    + +G  +
Sbjct: 8   GTIAMLNEISSDTLE--QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACR 65

Query: 414 LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLE 473
              G  + A+                 EP                 ++  +  E  + L 
Sbjct: 66  QAMGQYDLAIHSYSYGAVM-----DIXEPRFPFHA-------AECLLQXGELAEAESGLF 113

Query: 474 R----IGNLKEPEEPKSKAHYY 491
                I N  E  E  ++    
Sbjct: 114 LAQELIANXPEFXELSTRVSSM 135

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 25/131 (19%)

Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS------- 431
           F S+ + E  +  LQ  +   P N     L+G+  L +     ++     A+        
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79

Query: 432 --------KLFLAGHPTEPEAIDLL----------IVASQWSGVACIRQEKWEEGIAHLE 473
                     + A      +   ++          I A          Q  + + I   +
Sbjct: 80  LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQ 139

Query: 474 RIGNLKEPEEP 484
           ++ +L  P   
Sbjct: 140 KVMDLNSPRIN 150

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 10/96 (10%), Positives = 27/96 (28%), Gaps = 12/96 (12%)

Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
                + ++       A   +P+NI   I +     ++   ++       A  K      
Sbjct: 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-----F 368

Query: 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474
           P  PE  +               +  +++ +   + 
Sbjct: 369 PEAPEVPNFF-------AEILTDKNDFDKALKQYDL 397

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440
           +  +      LL+ A   +P +  A I + Q +LQ+  ++EA+   E +     LA   T
Sbjct: 427 TVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD---LA--RT 481

Query: 441 EPEAIDLLIVA 451
             E +  +  A
Sbjct: 482 MEEKLQAITFA 492

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 26/215 (12%), Positives = 55/215 (25%), Gaps = 31/215 (14%)

Query: 276 LAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVT-----NSSFSIVQQLALKHPASRTMLG 330
                 +      L          +   +  VT        F      A    ++     
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189

Query: 331 LPDKVVPAAARKPEEIDTLETTLESPAKQLKISVE------NLTPKELIALSVK---FLS 381
           L + +     R PE  D  + +    A+  +  ++       L  K  I+L         
Sbjct: 190 LMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249

Query: 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441
           K D       ++ A+   P  +N+ I M      +    E   Y + A+           
Sbjct: 250 KNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKL-----DSNN 303

Query: 442 PEAIDLLIVASQWS--GVACIRQEKWEEGIAHLER 474
                       +   G      + +++     ++
Sbjct: 304 SSV---------YYHRGQMNFILQNYDQAGKDFDK 329

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 14/117 (11%), Positives = 29/117 (24%), Gaps = 15/117 (12%)

Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
              + D          AL  + +N +     GQ        ++A +  + A         
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-----D 334

Query: 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 495
           P        L            R+ K+++             PE    +   +   +
Sbjct: 335 PENIFPYIQL-------ACLAYRENKFDDCETLFSEAKRKF-PE--APEVPNFFAEI 381

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 21/138 (15%)

Query: 372 LIALSVKFLSKGDK--ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429
            +A +   L+ G +  +    + Q   +K    +  L       + +G  E A   L+ A
Sbjct: 167 QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226

Query: 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP----- 484
           + K         PE +  L+V SQ          K  E                P     
Sbjct: 227 LDK-----DSGHPETLINLVVLSQ-------HLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274

Query: 485 KSKAHYYDGLVVLARYVA 502
           ++K + +D LV   +Y  
Sbjct: 275 RAKENDFDRLV--LQYAP 290

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 18/149 (12%)

Query: 353 LESPAKQLKISVENLTPKELIALSVKFLSK---GDKERPIPLLQLALNKEPDNINALILM 409
           + +    L  +  NLTP +++A++     K      +R +P+L  A    P  + A+   
Sbjct: 173 VHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASH 232

Query: 410 GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469
              +     ++  +  L  A     L   P +  AI   I   Q         E  +  +
Sbjct: 233 DGGKQALETMQRLLPVLCQAHG---LP--PDQVVAIASNIGGKQ-------ALETVQRLL 280

Query: 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLA 498
             L +   L  P++    A    G    A
Sbjct: 281 PVLCQAHGLT-PDQV--VAIASHGGGKQA 306

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 13/119 (10%)

Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
           +    +          ++N++     A    G    Q    + A++ L+ A+ +L     
Sbjct: 47  YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL----R 102

Query: 439 PTEPEAIDLLIVASQWS--------GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH 489
             +     +L +  +               ++E+W++    L    ++K  E   SK  
Sbjct: 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK-SEPRHSKID 160

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 9/101 (8%), Positives = 28/101 (27%), Gaps = 12/101 (11%)

Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
            L      +     + +L    +  +  + M     ++     A +Y +           
Sbjct: 151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG-----G 205

Query: 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479
                ++ L I  ++         E  +   ++  ++  L 
Sbjct: 206 GQNARSLLLGIRLAK-------VFEDRDTAASYGLQLKRLY 239

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 12/101 (11%)

Query: 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434
           +        D +  +     A+   P   +A   +       G + EA+     A     
Sbjct: 83  MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA----- 137

Query: 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475
           L   P  P+A   L    Q           W +    ++++
Sbjct: 138 LKLKPDFPDAYCNLAHCLQ-------IVCDWTDYDERMKKL 171

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 12/106 (11%)

Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS--KLFLAGHPTEPEAIDLLI 449
           LQ +      +   L  +G     K  ++ A+ + + A+   K   +           L 
Sbjct: 464 LQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL- 522

Query: 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 495
                 G A  + + ++  I  L +   L    +     H    LV
Sbjct: 523 ------GHAYRKLKMYDAAIDALNQGLLLS-TNDA--NVHTAIALV 559

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 13/143 (9%), Positives = 35/143 (24%), Gaps = 15/143 (10%)

Query: 353 LESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT 412
           +           +    + L  L +   S  D+ R       ++N    + + L+    T
Sbjct: 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT 314

Query: 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHL 472
              +    + +      +        P   +   L          +     +  +     
Sbjct: 315 LFVRSRFIDVLAITTKILEI-----DPYNLDVYPLH-------LASLHESGEKNKLYLIS 362

Query: 473 ERIGNLKEPEEPKSKAHYYDGLV 495
             + +   PE+         G+ 
Sbjct: 363 NDLVDRH-PEKA--VTWLAVGIY 382

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 10/106 (9%)

Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
              AL+  P++   +  +G    Q G  + A ++   A+ K+           + +    
Sbjct: 182 FSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI-----KAIGNEVTVDKWE 236

Query: 452 SQWS--GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 495
              +  G  C + +K+ E + +  +   L  P+   +  +   G +
Sbjct: 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQN--ASTYSAIGYI 279

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	565
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.63
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.6
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.59
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.58
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.56
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.56
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.51
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.51
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.51
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.5
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.5
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.5
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.49
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.48
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.46
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.46
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.46
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.45
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.45
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.44
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.43
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.42
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.42
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.42
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.42
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.41
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.4
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.4
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.39
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.39
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.39
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.39
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.38
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.37
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.37
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.36
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.36
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.36
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.36
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.36
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.35
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.34
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.34
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.34
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.34
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.32
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.31
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.3
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.3
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.3
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.3
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.29
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.29
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.29
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.28
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.28
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.27
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.26
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.26
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.26
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.26
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.25
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.25
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.25
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.24
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.24
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.24
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.24
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.24
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.24
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.23
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.23
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.21
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.21
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.21
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.2
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.2
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.2
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.18
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.18
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.18
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.14
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.14
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.14
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.13
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.13
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.12
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.11
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.11
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.08
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.07
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.06
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.03
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.03
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.02
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.01
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.0
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.99
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.99
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.99
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.98
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.98
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.96
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.96
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.93
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.91
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.91
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.9
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.89
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.88
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.88
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.88
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.88
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.86
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.86
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.85
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.83
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.83
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.82
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.82
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.82
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.81
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.81
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.8
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.78
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.78
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.78
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.76
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.75
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.74
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.74
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.74
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.74
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.73
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.73
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.73
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.72
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.7
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.68
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.68
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.68
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.68
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.67
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.67
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.67
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.65
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.65
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.64
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.64
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.61
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.6
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.6
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.59
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.58
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.56
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.54
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.54
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.54
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.53
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.53
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.53
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.51
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.5
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.49
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.44
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.4
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.34
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.32
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.29
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.28
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.26
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.22
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.21
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.17
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.07
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.04
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.03
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.96
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.92
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.91
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.86
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.75
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.6
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.55
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.49
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.42
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.35
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.31
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.28
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.24
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.08
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.97
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.84
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.62
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.84
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.75
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.51
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.35
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.09
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.98
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.98
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.6
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	93.35
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	92.92
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	92.9
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.67
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.75
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	91.33
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.0
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.68
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	90.37
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.74
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.54
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	86.55
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	85.26
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	83.74
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	82.62
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	82.1

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=8.6e-16  Score=148.39  Aligned_cols=173  Identities=13%  Similarity=0.128  Sum_probs=135.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      |.+++.++.+|..+.+.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|++++++     +|+++   
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~---   73 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-----TPRYL---   73 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH---
Confidence            3467789999999999999999999999999999999999999999999999999999999999765     46544   


Q ss_pred             hHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHH
Q 008435          446 DLLIVASQWSGVACIRQ-----------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANIT  505 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~-----------g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l  505 (565)
                          .++..+|.++..+           |++++|++.|++ +..++|+++....       .+|..+         ++++
T Consensus        74 ----~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~-al~~~P~~~~~~~-------~lg~~~~~~g~~~~A~~~~  141 (217)
T 2pl2_A           74 ----GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD-AERVNPRYAPLHL-------QRGLVYALLGERDKAEASL  141 (217)
T ss_dssp             ----HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHH-HHHhCcccHHHHH-------HHHHHHHHcCChHHHHHHH
Confidence                4678899999999           999999999999 6778999886533       444444         8999


Q ss_pred             HHHHhcCCCcHHHHH-------hhhhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHHHh
Q 008435          506 FLIFATSPSIINLLT-------VSNIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       506 ~~Al~l~P~~~~~l~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                      +++++++ +...++.       ..++.++..+.+..+  ..+.++++|.++|.+|..+|+-.+
T Consensus       142 ~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~  203 (217)
T 2pl2_A          142 KQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE  203 (217)
T ss_dssp             HHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred             HHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence            9999999 7665443       333444444333332  235688999999999998887544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.63  E-value=2.1e-15  Score=133.57  Aligned_cols=112  Identities=11%  Similarity=0.129  Sum_probs=100.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       363 ~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      ..+|..++.+..+|..+++.|++++|+..|++|++.+|+++.+|+.+|.++...|++++|++.|++|+++     +|++.
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~   81 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSKFI   81 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhhhh
Confidence            3344457889999999999999999999999999999999999999999999999999999999999775     46544


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhh
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK  487 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~  487 (565)
                             .+++.+|.++..+|++++|++.|++ +..++|+++...
T Consensus        82 -------~a~~~lg~~~~~~~~~~~A~~~~~~-al~l~P~~~~a~  118 (126)
T 4gco_A           82 -------KGYIRKAACLVAMREWSKAQRAYED-ALQVDPSNEEAR  118 (126)
T ss_dssp             -------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHH
T ss_pred             -------HHHHHHHHHHHHCCCHHHHHHHHHH-HHHHCcCCHHHH
Confidence                   4788999999999999999999999 777999998653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=1.1e-14  Score=135.27  Aligned_cols=171  Identities=16%  Similarity=0.137  Sum_probs=127.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      ++..++.+|..+...|++++|+..|+++++.||+++.+++.+|.++...|++++|++.+++++..     +|+++     
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-----   73 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DTTSA-----   73 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCH-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CchhH-----
Confidence            57789999999999999999999999999999999999999999999999999999999999764     34433     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHh----
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTV----  521 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~----  521 (565)
                        .++..+|.++...+++++|++.+++ +...+|+++.........+..++..-  +++++++++++|+...++..    
T Consensus        74 --~~~~~~~~~~~~~~~~~~a~~~~~~-a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~  150 (184)
T 3vtx_A           74 --EAYYILGSANFMIDEKQAAIDALQR-AIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLA  150 (184)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHH
Confidence              3567789999999999999999999 66788888754332211111112111  78999999999987765433    


Q ss_pred             ---hhhhhHHHhhhhhhhhhhhhhhhccchhHH
Q 008435          522 ---SNIIDIIYVNCYELKKKRFASCFFGFSVLY  551 (565)
Q Consensus       522 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (565)
                         .++.+++.+.+..+.+..=.++.++||+++
T Consensus       151 ~~~~g~~~~A~~~~~~al~~~p~~a~~~lali~  183 (184)
T 3vtx_A          151 YEGKGLRDEAVKYFKKALEKEEKKAKYELALVP  183 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTHHHHHHCSCCSC
T ss_pred             HHHCCCHHHHHHHHHHHHhCCccCHHHHHHhhC
Confidence               233334444333333332235667777654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.60  E-value=5.9e-15  Score=168.12  Aligned_cols=136  Identities=18%  Similarity=0.106  Sum_probs=119.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      |.+++.+..+|..+.+.|++++|+.+|++|++++|+++.+|+++|.+|.+.|++++|+++|++|+++     +|+++   
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---   77 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFA---   77 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---
Confidence            4468899999999999999999999999999999999999999999999999999999999999775     46654   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcH
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSII  516 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~  516 (565)
                          .+++++|.++..+|++++|++.|++ +..++|+++....       ++|..+         +++|+++++++|++.
T Consensus        78 ----~a~~nLg~~l~~~g~~~~A~~~~~k-Al~l~P~~~~a~~-------~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~  145 (723)
T 4gyw_A           78 ----DAYSNMGNTLKEMQDVQGALQCYTR-AIQINPAFADAHS-------NLASIHKDSGNIPEAIASYRTALKLKPDFP  145 (723)
T ss_dssp             ----HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence                5788999999999999999999999 6778999876533       455444         899999999999987


Q ss_pred             HHHHh
Q 008435          517 NLLTV  521 (565)
Q Consensus       517 ~~l~~  521 (565)
                      +++.+
T Consensus       146 ~a~~~  150 (723)
T 4gyw_A          146 DAYCN  150 (723)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            76544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.59  E-value=3.5e-15  Score=157.74  Aligned_cols=181  Identities=8%  Similarity=-0.025  Sum_probs=123.2

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhcCCC
Q 008435          361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL-LEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~-~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      .+...+.+++.+..+|..+...|++++|+..++++|+++|++..+|+.+|.++...|+ +++|+++|++|+++     +|
T Consensus        89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-----~P  163 (382)
T 2h6f_A           89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----QP  163 (382)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CT
T ss_pred             hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----CC
Confidence            3344444577788888888889999999999999999999999999999999999996 99999999999765     46


Q ss_pred             CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHH
Q 008435          440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIIN  517 (565)
Q Consensus       440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~  517 (565)
                      +++       .+|+++|.++..+|++++|++.|++ +..++|++...+.+...++..++..-  +++++++++++|++..
T Consensus       164 ~~~-------~a~~~~g~~~~~~g~~~eAl~~~~k-al~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~  235 (382)
T 2h6f_A          164 KNY-------QVWHHRRVLVEWLRDPSQELEFIAD-ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS  235 (382)
T ss_dssp             TCH-------HHHHHHHHHHHHHTCCTTHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred             CCH-------HHHHHHHHHHHHccCHHHHHHHHHH-HHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence            544       4677788888888888888888888 66678887754332111111111111  7788888888887766


Q ss_pred             HHHhhhhh--------hHH--------HhhhhhhhhhhhhhhhccchhHHHHHH
Q 008435          518 LLTVSNII--------DII--------YVNCYELKKKRFASCFFGFSVLYVMLV  555 (565)
Q Consensus       518 ~l~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (565)
                      +|......        ++.        ++.+.. ....++++|+++|.+|...+
T Consensus       236 a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~-l~P~~~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          236 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK-LVPHNESAWNYLKGILQDRG  288 (382)
T ss_dssp             HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHccC
Confidence            55332211        111        122222 23457778888877776644

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.58  E-value=3.5e-14  Score=136.60  Aligned_cols=143  Identities=15%  Similarity=0.020  Sum_probs=120.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      +.+++.++..|..+...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+++|+++++.     +|++   
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~---   75 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----NYNL---   75 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCSH---
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----Ccch---
Confidence            45789999999999999999999999999999999 99999999999999999999999999999764     3542   


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCC-
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPS-  514 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~-  514 (565)
                          ..++..+|.++..+|++++|++.|++ +...+|+++.....+...+..+|..+         +++++++++++|+ 
T Consensus        76 ----~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  150 (228)
T 4i17_A           76 ----ANAYIGKSAAYRDMKNNQEYIATLTE-GIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK  150 (228)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH
T ss_pred             ----HHHHHHHHHHHHHcccHHHHHHHHHH-HHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc
Confidence                24688899999999999999999999 67789998865444445555666655         7788888888887 


Q ss_pred             -cHHHHHh
Q 008435          515 -IINLLTV  521 (565)
Q Consensus       515 -~~~~l~~  521 (565)
                       ...++..
T Consensus       151 ~~~~~~~~  158 (228)
T 4i17_A          151 WKTDALYS  158 (228)
T ss_dssp             HHHHHHHH
T ss_pred             ccHHHHHH
Confidence             6555433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.57  E-value=3e-14  Score=137.52  Aligned_cols=150  Identities=14%  Similarity=0.153  Sum_probs=122.5

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHH
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-----------GLLEEAVEYLE  427 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~-----------g~~~eA~~~~~  427 (565)
                      .+.+...|.+++.++.+|..+.+.|++++|+..++++++++|+++.+++.+|.++...           |++++|++.|+
T Consensus        29 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~  108 (217)
T 2pl2_A           29 ERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK  108 (217)
T ss_dssp             HHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHH
Confidence            4456667778999999999999999999999999999999999999999999999999           99999999999


Q ss_pred             HHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHH
Q 008435          428 CAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANIT  505 (565)
Q Consensus       428 rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l  505 (565)
                      +++++     +|+++       .++..+|.++..+|++++|++.|++ +..++ +++.........+...+..-  ++.+
T Consensus       109 ~al~~-----~P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~  174 (217)
T 2pl2_A          109 DAERV-----NPRYA-------PLHLQRGLVYALLGERDKAEASLKQ-ALALE-DTPEIRSALAELYLSMGRLDEALAQY  174 (217)
T ss_dssp             HHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHh-----CcccH-------HHHHHHHHHHHHcCChHHHHHHHHH-HHhcc-cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99765     46544       4678899999999999999999999 55566 66654332222222222222  8999


Q ss_pred             HHHHhcCCCcHHHHHhh
Q 008435          506 FLIFATSPSIINLLTVS  522 (565)
Q Consensus       506 ~~Al~l~P~~~~~l~~~  522 (565)
                      +++++.+|+...++...
T Consensus       175 ~~al~~~P~~~~~~~~l  191 (217)
T 2pl2_A          175 AKALEQAPKDLDLRVRY  191 (217)
T ss_dssp             HHHHHHSTTCHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHH
Confidence            99999999988776554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.56  E-value=2.5e-14  Score=151.17  Aligned_cols=184  Identities=8%  Similarity=0.010  Sum_probs=144.3

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCC-CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGD-KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG  437 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~-~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~  437 (565)
                      .+.+...+.++..++.+|..+...|+ +++|+..|++|++++|+++.+|+.+|.++...|++++|+++|++|+++     
T Consensus       121 ~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-----  195 (382)
T 2h6f_A          121 RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-----  195 (382)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----
T ss_pred             HHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence            34445556678999999999999997 999999999999999999999999999999999999999999999765     


Q ss_pred             CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHH-----H---HHHHHHHH
Q 008435          438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARY-----V---ANITFLIF  509 (565)
Q Consensus       438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~-----l---~~~l~~Al  509 (565)
                      +|++.       .+|+++|.++..+|++++|++.|++ +..++|+++..+.+....+..+...     .   ++++++++
T Consensus       196 dP~~~-------~a~~~lg~~~~~~g~~~eAl~~~~~-al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al  267 (382)
T 2h6f_A          196 DAKNY-------HAWQHRQWVIQEFKLWDNELQYVDQ-LLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI  267 (382)
T ss_dssp             CTTCH-------HHHHHHHHHHHHHTCCTTHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred             CccCH-------HHHHHHHHHHHHcCChHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence            56654       5788999999999999999999999 7779999987644332222221110     0   37899999


Q ss_pred             hcCCCcHHHHHhhh---------hhhHHHhhhhhh-hhhhhhhhhccchhHHHHHH
Q 008435          510 ATSPSIINLLTVSN---------IIDIIYVNCYEL-KKKRFASCFFGFSVLYVMLV  555 (565)
Q Consensus       510 ~l~P~~~~~l~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  555 (565)
                      +++|++..++....         +.+++.+.+.++ .......++..+|.+|..++
T Consensus       268 ~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~  323 (382)
T 2h6f_A          268 KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDML  323 (382)
T ss_dssp             HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHh
Confidence            99999887664421         233444444333 33557788999999999875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.56  E-value=1.3e-14  Score=133.41  Aligned_cols=112  Identities=11%  Similarity=0.074  Sum_probs=100.1

Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       360 ~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      +.+...|.+++.++.+|..+.+.|++++|+..|+++++++|+++.+|+.+|.++...|++++|+++|++|+++     +|
T Consensus        27 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----~P  101 (151)
T 3gyz_A           27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GK  101 (151)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SS
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CC
Confidence            4455556678899999999999999999999999999999999999999999999999999999999999765     57


Q ss_pred             CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      +++       .+++++|.++..+|++++|++.|++ +..++|+.+
T Consensus       102 ~~~-------~~~~~lg~~~~~lg~~~eA~~~~~~-al~l~~~~~  138 (151)
T 3gyz_A          102 NDY-------TPVFHTGQCQLRLKAPLKAKECFEL-VIQHSNDEK  138 (151)
T ss_dssp             SCC-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCCHH
T ss_pred             CCc-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCHH
Confidence            655       4688999999999999999999999 666777755

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.51  E-value=2.2e-13  Score=130.51  Aligned_cols=108  Identities=7%  Similarity=0.096  Sum_probs=98.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL----------------MGQTQLQKGLLEEAVEYLECAIS  431 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~----------------LG~~~~~~g~~~eA~~~~~rAl~  431 (565)
                      +++.++..|..+...|++++|+.+|+++++.+|+++.+|+.                +|.++...|++++|+++|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999                99999999999999999999976


Q ss_pred             hhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       432 l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                      +     +|+++       .++..+|.++...|++++|++.|++ +..++|+++....
T Consensus        83 ~-----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~P~~~~a~~  126 (208)
T 3urz_A           83 K-----APNNV-------DCLEACAEMQVCRGQEKDALRMYEK-ILQLEADNLAANI  126 (208)
T ss_dssp             H-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTCHHHHH
T ss_pred             H-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCHHHHH
Confidence            5     46554       4688899999999999999999999 7779999986543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.51  E-value=2e-13  Score=147.89  Aligned_cols=180  Identities=12%  Similarity=0.006  Sum_probs=143.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCC-CchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          366 NLTPKELIALSVKFLSKGDK-ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~-~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      +.++..++.+|..+...|++ ++|+.+|++|++++|+++.+|+.+|.+|...|++++|+++|++|+++     +|+    
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~----  169 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-----CKN----  169 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----CCC----
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCC----
Confidence            34688999999999999999 99999999999999999999999999999999999999999999653     343    


Q ss_pred             hhHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH--------HHHH--HHHH
Q 008435          445 IDLLIVASQWSGVACIRQ---------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL--------ARYV--ANIT  505 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~---------g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L--------a~~l--~~~l  505 (565)
                          ..++.++|.++..+         |++++|++.|++ +..++|+++..+..+...+..+        +...  +++|
T Consensus       170 ----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~  244 (474)
T 4abn_A          170 ----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL-AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAY  244 (474)
T ss_dssp             ----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence                14688899999999         999999999999 6778999987655444444444        4344  8999


Q ss_pred             HHHHhcCC---CcHHHHHh-------hhhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHHHh
Q 008435          506 FLIFATSP---SIINLLTV-------SNIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       506 ~~Al~l~P---~~~~~l~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                      +++++++|   +...++..       .++.+++.+.+.++  ..+.+.+++.++|.+|..++...+
T Consensus       245 ~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e  310 (474)
T 4abn_A          245 AQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS  310 (474)
T ss_dssp             HHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999   76654433       23333443333322  235588999999999999986543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.51  E-value=1.4e-13  Score=125.12  Aligned_cols=116  Identities=12%  Similarity=0.073  Sum_probs=103.2

Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008435          358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG  437 (565)
Q Consensus       358 ~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~  437 (565)
                      +.+.+...+.+++.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++++++     
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----   84 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----   84 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            445566666678899999999999999999999999999999999999999999999999999999999999765     


Q ss_pred             CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      +|+++       .+++++|.++..+|++++|++.|++ +..++|+++..
T Consensus        85 ~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~  125 (148)
T 2vgx_A           85 DIXEP-------RFPFHAAECLLQXGELAEAESGLFL-AQELIANXPEF  125 (148)
T ss_dssp             STTCT-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHTTCGGG
T ss_pred             CCCCc-------hHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCcCCCcc
Confidence            46654       4678899999999999999999999 66788888754

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.50  E-value=1.8e-14  Score=131.23  Aligned_cols=126  Identities=16%  Similarity=0.105  Sum_probs=73.6

Q ss_pred             HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHH
Q 008435          375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW  454 (565)
Q Consensus       375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~  454 (565)
                      +|..+..+|+.++|+..+++++..+|+++.+++.+|.+|...|++++|+++|++++++     +|+++       .++..
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~~-------~a~~~   70 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QERDP-------KAHRF   70 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHH
Confidence            3444455566666666666666666666666666666666666666666666666543     34433       35566


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HH-HHHHHHhcCCCcHHHHH
Q 008435          455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------AN-ITFLIFATSPSIINLLT  520 (565)
Q Consensus       455 lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~-~l~~Al~l~P~~~~~l~  520 (565)
                      +|.++...|++++|+..|++ +..++|+++....       .+|..+         ++ +++++++++|++..++.
T Consensus        71 lg~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~-------~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~  138 (150)
T 4ga2_A           71 LGLLYELEENTDKAVECYRR-SVELNPTQKDLVL-------KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK  138 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHcCchHHHHHHHHH-HHHhCCCCHHHHH-------HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence            66666666666666666666 4456666654322       333333         22 34666666666655543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.50  E-value=3.3e-13  Score=129.73  Aligned_cols=114  Identities=11%  Similarity=0.018  Sum_probs=98.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      .+...++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|++++++     +|+++....
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~  114 (228)
T 4i17_A           40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA-----VPGNATIEK  114 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHH
Confidence            456788889999999999999999999999999999999999999999999999999999999765     466553333


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC--Cchh
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE--EPKS  486 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~--~~~~  486 (565)
                      ....++..+|.++...|++++|++.|++ +...+|+  ++..
T Consensus       115 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~  155 (228)
T 4i17_A          115 LYAIYYLKEGQKFQQAGNIEKAEENYKH-ATDVTSKKWKTDA  155 (228)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHH-HTTSSCHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHhccHHHHHHHHHH-HHhcCCCcccHHH
Confidence            3345788899999999999999999999 6667777  5543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.50  E-value=1.6e-13  Score=142.45  Aligned_cols=171  Identities=14%  Similarity=0.061  Sum_probs=135.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      .+.+++.++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++|+++++.     +|+++  
T Consensus       199 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~--  271 (388)
T 1w3b_A          199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFP--  271 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCH--
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH--
Confidence            34467889999999999999999999999999999999999999999999999999999999999654     46544  


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCc
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSI  515 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~  515 (565)
                           .++..+|.++...|++++|++.|++ +...+|.++....       .++..+         .+.++++++.+|+.
T Consensus       272 -----~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~al~~~p~~  338 (388)
T 1w3b_A          272 -----DAYCNLANALKEKGSVAEAEDCYNT-ALRLCPTHADSLN-------NLANIKREQGNIEEAVRLYRKALEVFPEF  338 (388)
T ss_dssp             -----HHHHHHHHHHHHHSCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCcccHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence                 3577899999999999999999999 6668888875432       444444         78999999999997


Q ss_pred             HHHHHh-------hhhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHH
Q 008435          516 INLLTV-------SNIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLV  555 (565)
Q Consensus       516 ~~~l~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  555 (565)
                      ...+..       .++.++..+.+.++  ..+.+.++|+++|.+|.+++
T Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            654432       23333333333222  23559999999999987754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.49  E-value=1.8e-13  Score=122.74  Aligned_cols=113  Identities=12%  Similarity=0.115  Sum_probs=100.1

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      .+...+.+.+.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++++++     +|+
T Consensus        10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~   84 (142)
T 2xcb_A           10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-----DIN   84 (142)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCC
Confidence            344445567889999999999999999999999999999999999999999999999999999999999765     466


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      ++       .+++++|.++...|++++|++.|++ +..++|+++..
T Consensus        85 ~~-------~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~  122 (142)
T 2xcb_A           85 EP-------RFPFHAAECHLQLGDLDGAESGFYS-ARALAAAQPAH  122 (142)
T ss_dssp             CT-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHTCGGG
T ss_pred             Cc-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCcch
Confidence            54       3578899999999999999999999 66688888754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.48  E-value=1.4e-12  Score=128.28  Aligned_cols=188  Identities=13%  Similarity=0.052  Sum_probs=137.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      ..+.+++.++.+|..+...|++++|+..|+++++.+|++   +.+++.+|.++...|++++|++.|+++++.     +|+
T Consensus        10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~p~   84 (261)
T 3qky_A           10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI-----YQI   84 (261)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----CCC
Confidence            345679999999999999999999999999999999999   999999999999999999999999999765     354


Q ss_pred             ChhhhhHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHhhccCCCCchhhhhh----------hhHHHHHHHHH-
Q 008435          441 EPEAIDLLIVASQWSGVACIR--------QEKWEEGIAHLERIGNLKEPEEPKSKAHY----------YDGLVVLARYV-  501 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~--------~g~~~eAi~~leraa~~l~P~~~~~~~~~----------~~~~~~La~~l-  501 (565)
                      ++.    ...+++.+|.++..        .|++++|++.|++ +...+|+++......          ......+|..+ 
T Consensus        85 ~~~----~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~-~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  159 (261)
T 3qky_A           85 DPR----VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQL-FIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE  159 (261)
T ss_dssp             CTT----HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH-HHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cch----hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH-HHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            431    23578899999999        9999999999999 666889887543211          00013455554 


Q ss_pred             --------HHHHHHHHhcCCC---cHHHHHhh-----------------hhhhHHHhhhhhhhh-----hhhhhhhccch
Q 008435          502 --------ANITFLIFATSPS---IINLLTVS-----------------NIIDIIYVNCYELKK-----KRFASCFFGFS  548 (565)
Q Consensus       502 --------~~~l~~Al~l~P~---~~~~l~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~  548 (565)
                              ++.++++++.+|+   ..+++...                 ++.+++...+..+.+     ....+++..++
T Consensus       160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  239 (261)
T 3qky_A          160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT  239 (261)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence                    8899999999998   33332222                 222223222222221     22345677788


Q ss_pred             hHHHHHHHHHhhh
Q 008435          549 VLYVMLVAMLKLR  561 (565)
Q Consensus       549 ~~~~~~~~~~~~~  561 (565)
                      .++..++...+-.
T Consensus       240 ~~~~~~~~~~~~~  252 (261)
T 3qky_A          240 RARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHHHTCT
T ss_pred             HHHHHHHHhhhhh
Confidence            8888777765543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.46  E-value=1.4e-13  Score=134.75  Aligned_cols=171  Identities=8%  Similarity=-0.020  Sum_probs=128.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +++.++..|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++.      |.++   +.
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~---~~   72 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK------VNAT---KA   72 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT------SCTT---TC
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------cCch---hH
Confidence            56778999999999999999999999999999999999999999999999999999999999642      3222   22


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHH
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINL  518 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~  518 (565)
                      ...++..+|.++...|++++|+++|++ +...+|.++....       .+|..+         +++++++++.+|+....
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  144 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQA-AVDRDTTRLDMYG-------QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV  144 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCTHHHH-------HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHH-HHhcCcccHHHHH-------HHHHHHHHccCHHHHHHHHHHHhhcCCCcHHH
Confidence            234577899999999999999999999 6668888875433       444444         78899999999987765


Q ss_pred             HHhhh-------hhhHH---HhhhhhhhhhhhhhhhccchhHHHHHHH
Q 008435          519 LTVSN-------IIDII---YVNCYELKKKRFASCFFGFSVLYVMLVA  556 (565)
Q Consensus       519 l~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (565)
                      +....       +.+++   ++...+.. +.+.++|.++|.+|..+++
T Consensus       145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          145 FYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCc
Confidence            54433       12222   22233332 3467888899999887764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.46  E-value=2.8e-13  Score=154.34  Aligned_cols=137  Identities=15%  Similarity=0.087  Sum_probs=118.2

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+.+...+.+++.++.+|..+.+.|++++|+..|++|++++|+++++|+.+|.++...|++++|+++|++|+++     +
T Consensus        33 ~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----~  107 (723)
T 4gyw_A           33 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----N  107 (723)
T ss_dssp             HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Confidence            44555566689999999999999999999999999999999999999999999999999999999999999775     4


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHH
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIF  509 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al  509 (565)
                      |+++       .++.++|.+|..+|++++|++.|++ +..++|+++....       ++|..+         .+.+++++
T Consensus       108 P~~~-------~a~~~Lg~~~~~~g~~~eAi~~~~~-Al~l~P~~~~a~~-------~L~~~l~~~g~~~~A~~~~~kal  172 (723)
T 4gyw_A          108 PAFA-------DAHSNLASIHKDSGNIPEAIASYRT-ALKLKPDFPDAYC-------NLAHCLQIVCDWTDYDERMKKLV  172 (723)
T ss_dssp             TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHH-------HHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHh-------hhhhHHHhcccHHHHHHHHHHHH
Confidence            6554       4788999999999999999999999 7779999886533       555554         78888888


Q ss_pred             hcCCCc
Q 008435          510 ATSPSI  515 (565)
Q Consensus       510 ~l~P~~  515 (565)
                      ++.|+.
T Consensus       173 ~l~~~~  178 (723)
T 4gyw_A          173 SIVADQ  178 (723)
T ss_dssp             HHHHHH
T ss_pred             HhChhH
Confidence            876653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.46  E-value=4.1e-13  Score=118.69  Aligned_cols=108  Identities=16%  Similarity=0.117  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +..+.++|..+...|++++|+.+|++|++++|+++.+|..+|.+|...|++++|++.|++|+++.     |++.......
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~   82 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-----RETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTTCCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-----cccchhhHHH
Confidence            55677899999999999999999999999999999999999999999999999999999998764     3322222333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                      ..++..+|.++..+|++++|+++|++ +...+|+
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~k-al~~~~~  115 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHR-SLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCcC
Confidence            45788999999999999999999999 5545553

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.45  E-value=1.9e-13  Score=124.32  Aligned_cols=115  Identities=11%  Similarity=0.041  Sum_probs=99.2

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      ...+...+.++..++.+|..+.+.|++++|+.+|+++++++|+++.+|+.+|.++...|++++|+.+|++++++     +
T Consensus        21 ~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~   95 (150)
T 4ga2_A           21 QGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL-----N   95 (150)
T ss_dssp             HHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred             HHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----C
Confidence            34444445556678899999999999999999999999999999999999999999999999999999999765     4


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHhhccCCCCchh
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAH-LERIGNLKEPEEPKS  486 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~-leraa~~l~P~~~~~  486 (565)
                      |+++       .+++++|.++...|++++|.+. +++ +..++|+++..
T Consensus        96 p~~~-------~~~~~la~~~~~~~~~~~aa~~~~~~-al~l~P~~~~~  136 (150)
T 4ga2_A           96 PTQK-------DLVLKIAELLCKNDVTDGRAKYWVER-AAKLFPGSPAV  136 (150)
T ss_dssp             TTCH-------HHHHHHHHHHHHHCSSSSHHHHHHHH-HHHHSTTCHHH
T ss_pred             CCCH-------HHHHHHHHHHHHcCChHHHHHHHHHH-HHHhCcCCHHH
Confidence            6654       4688899999999999887765 588 77799999864

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.45  E-value=5.5e-13  Score=137.02  Aligned_cols=101  Identities=18%  Similarity=0.195  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +..++.+|..+...|++++|+.+|+++++.+|+++.+|+.+|.++...|++++|+++|++++++     +|++.      
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~------  133 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-----QPNNL------  133 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH------
Confidence            3346667777777777777777777777777777777777777777777777777777777543     23322      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                       .++..+|.++..+|++++|++.|++ +...+|+
T Consensus       134 -~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~  165 (365)
T 4eqf_A          134 -KALMALAVSYTNTSHQQDACEALKN-WIKQNPK  165 (365)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCHH
T ss_pred             -HHHHHHHHHHHccccHHHHHHHHHH-HHHhCcc
Confidence             3455566666666666666666666 3334443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.44  E-value=1.2e-12  Score=135.87  Aligned_cols=62  Identities=27%  Similarity=0.245  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI  430 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl  430 (565)
                      ++.+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|++++
T Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A          101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.43  E-value=6.1e-13  Score=115.91  Aligned_cols=100  Identities=15%  Similarity=0.164  Sum_probs=91.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +++.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++++++     +|+++     
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~-----   72 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFV-----   72 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcH-----
Confidence            47789999999999999999999999999999999999999999999999999999999999765     45543     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKE  480 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~  480 (565)
                        .+++.+|.++..+|++++|++.|++ +..++
T Consensus        73 --~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~  102 (126)
T 3upv_A           73 --RAYIRKATAQIAVKEYASALETLDA-ARTKD  102 (126)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred             --HHHHHHHHHHHHHhCHHHHHHHHHH-HHHhC
Confidence              4688899999999999999999999 66677

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.42  E-value=7.1e-13  Score=116.25  Aligned_cols=101  Identities=17%  Similarity=0.135  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      .++.+|..+.+.|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++|+++     +|+++       .
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~-------~   86 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI-------A   86 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------H
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------H
Confidence            47899999999999999999999999999999999999999999999999999999999765     46544       4


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      +++.+|.++...|++++|++.|++ +...+|+++
T Consensus        87 ~~~~la~~~~~~g~~~~A~~~~~~-al~~~P~~~  119 (121)
T 1hxi_A           87 VHAALAVSHTNEHNANAALASLRA-WLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHC------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcCCC
Confidence            678899999999999999999999 666888765

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.42  E-value=2.6e-12  Score=135.28  Aligned_cols=188  Identities=16%  Similarity=0.102  Sum_probs=138.4

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      ...+...+.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|++.|+++++.     +
T Consensus        16 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~   90 (450)
T 2y4t_A           16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-----K   90 (450)
T ss_dssp             -------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred             cccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C
Confidence            34555566678999999999999999999999999999999999999999999999999999999999999765     3


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc---hhhhhhhhH-----HHHHHHHH---------
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP---KSKAHYYDG-----LVVLARYV---------  501 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~---~~~~~~~~~-----~~~La~~l---------  501 (565)
                      |++.       .++..+|.++..+|++++|++.|++ +...+|+++   .....+...     ...+|..+         
T Consensus        91 p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  162 (450)
T 2y4t_A           91 MDFT-------AARLQRGHLLLKQGKLDEAEDDFKK-VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA  162 (450)
T ss_dssp             TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            5433       4678899999999999999999999 666888776   432211111     12223333         


Q ss_pred             HHHHHHHHhcCCCcHHHH-------HhhhhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHHHHHh
Q 008435          502 ANITFLIFATSPSIINLL-------TVSNIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       502 ~~~l~~Al~l~P~~~~~l-------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                      +++++++++.+|+...++       ...++.+++.+.+.++.  .+...++|.++|.+|...++..+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  229 (450)
T 2y4t_A          163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL  229 (450)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            789999999999876544       23333334433333322  23468899999999988775443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.42  E-value=1.6e-12  Score=120.48  Aligned_cols=137  Identities=12%  Similarity=0.093  Sum_probs=117.5

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      .+...|.+++.++.+|..+...|++++|+..+++++..+|+++.++..+|.++...+++++|.+.++++++.     +|.
T Consensus        31 al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-----~~~  105 (184)
T 3vtx_A           31 VLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-----NTV  105 (184)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Ccc
Confidence            344455678999999999999999999999999999999999999999999999999999999999999765     354


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhc
Q 008435          441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFAT  511 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l  511 (565)
                      +.       .++..+|.++..+|++++|++.|++ +...+|+++....       .+|.++         ++++++++++
T Consensus       106 ~~-------~~~~~lg~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~~-------~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          106 YA-------DAYYKLGLVYDSMGEHDKAIEAYEK-TISIKPGFIRAYQ-------SIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             CH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ch-------HHHHHHHHHHHHhCCchhHHHHHHH-HHHhcchhhhHHH-------HHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            43       4577899999999999999999999 6678999876533       444444         8999999999


Q ss_pred             CCCcHH
Q 008435          512 SPSIIN  517 (565)
Q Consensus       512 ~P~~~~  517 (565)
                      +|+...
T Consensus       171 ~p~~a~  176 (184)
T 3vtx_A          171 EEKKAK  176 (184)
T ss_dssp             THHHHH
T ss_pred             CccCHH
Confidence            997654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.42  E-value=6.6e-13  Score=127.27  Aligned_cols=104  Identities=14%  Similarity=0.099  Sum_probs=40.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      .+..++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++.     +|.+.     
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-----   91 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL-----DSSAA-----   91 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCcch-----
Confidence            34444555555555555555555555555555555555555555555555555555555555432     12211     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                        .++..+|.++...|++++|++.+++ +...+|+++
T Consensus        92 --~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~  125 (243)
T 2q7f_A           92 --TAYYGAGNVYVVKEMYKEAKDMFEK-ALRAGMENG  125 (243)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHTCCSH
T ss_pred             --HHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCCCH
Confidence              2334445555555555555555555 333444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.42  E-value=2.7e-12  Score=131.20  Aligned_cols=183  Identities=13%  Similarity=0.057  Sum_probs=137.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ..+.++..++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++|+++++.     +|.+..
T Consensus        93 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~  167 (368)
T 1fch_A           93 QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY-----TPAYAH  167 (368)
T ss_dssp             SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----STTTGG
T ss_pred             hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHH
Confidence            345578889999999999999999999999999999999999999999999999999999999999764     333221


Q ss_pred             hhh------------------------------------------H--HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435          444 AID------------------------------------------L--LIVASQWSGVACIRQEKWEEGIAHLERIGNLK  479 (565)
Q Consensus       444 ~~~------------------------------------------~--~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l  479 (565)
                      ...                                          .  ...++..+|.++...|++++|++.|++ +...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~  246 (368)
T 1fch_A          168 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA-ALSV  246 (368)
T ss_dssp             GCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHh
Confidence            110                                          0  124677899999999999999999999 6667


Q ss_pred             CCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhh-------hhhhHHH---hhhhhhhhhh-
Q 008435          480 EPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVS-------NIIDIIY---VNCYELKKKR-  539 (565)
Q Consensus       480 ~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~---~~~~~~~~~~-  539 (565)
                      +|+++....       .+|..+         +++++++++++|+...++...       ++.+++.   +.+.+..+.. 
T Consensus       247 ~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  319 (368)
T 1fch_A          247 RPNDYLLWN-------KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  319 (368)
T ss_dssp             CTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             CcCCHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence            888775432       444444         789999999999876544322       2222332   3333333321 


Q ss_pred             ---------hhhhhccchhHHHHHHHHHh
Q 008435          540 ---------FASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       540 ---------~~~~~~~~~~~~~~~~~~~~  559 (565)
                               ..++|.++|.+|..+|+..+
T Consensus       320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          320 GPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             -----CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             CccccccchhhHHHHHHHHHHHHhCChHh
Confidence                     27899999999999886443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.5e-12  Score=125.47  Aligned_cols=181  Identities=12%  Similarity=0.084  Sum_probs=133.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      .++.+..+|..+...|++++|+.+++++++.+ +++.+++.+|.++...|++++|+++|+++++..     |++..+...
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~   77 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-----REMRADYKV   77 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTTCCHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----cccccchHH
Confidence            36789999999999999999999999999999 999999999999999999999999999998763     221111112


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-----------------------CchhhhhhhhHHHHHHHHH---
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE-----------------------EPKSKAHYYDGLVVLARYV---  501 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~-----------------------~~~~~~~~~~~~~~La~~l---  501 (565)
                      ...++..+|.++...|++++|++.|++ +...+|.                       +|.    ....+..+|..+   
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           78 ISKSFARIGNAYHKLGDLKKTIEYYQK-SLTEHRTADILTKLRNAEKELKKAEAEAYVNPE----KAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHH-HHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcc----hHHHHHHHHHHHHHh
Confidence            245788899999999999999999999 5554442                       221    112333455444   


Q ss_pred             ------HHHHHHHHhcCCCcHHHHHhh-------hhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHHHh
Q 008435          502 ------ANITFLIFATSPSIINLLTVS-------NIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       502 ------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                            .++++++++.+|+...++...       ++.+++...+...  ..+...++|.++|.+|...++..+
T Consensus       153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  225 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS  225 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence                  789999999999876544222       2333333332222  224578899999999988776443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.40  E-value=4.7e-12  Score=129.38  Aligned_cols=105  Identities=16%  Similarity=0.169  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++.     +|++.      
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~------  132 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-----KPDNQ------  132 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc-----CCCCH------
Confidence            4457899999999999999999999999999999999999999999999999999999999765     35433      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                       .++..+|.++...|++++|++.+++ +...+|++...
T Consensus       133 -~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~  168 (368)
T 1fch_A          133 -TALMALAVSFTNESLQRQACEILRD-WLRYTPAYAHL  168 (368)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHTSTTTGGG
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcCcHHH
Confidence             4677899999999999999999999 66677877654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.40  E-value=6e-12  Score=121.85  Aligned_cols=171  Identities=13%  Similarity=0.018  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ++.++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++.     +|.+.      
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~------  105 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-----DSRNA------  105 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcH------
Confidence            6778999999999999999999999999999999999999999999999999999999999765     34432      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--cCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHH
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNL--KEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIIN  517 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~--l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~  517 (565)
                       .++..+|.++...|++++|++++++ +..  .+|.++.       .+..+|..+         .++++++++.+|+...
T Consensus       106 -~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  176 (252)
T 2ho1_A          106 -RVLNNYGGFLYEQKRYEEAYQRLLE-ASQDTLYPERSR-------VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS  176 (252)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHH-HTTCTTCTTHHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred             -HHHHHHHHHHHHHhHHHHHHHHHHH-HHhCccCcccHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH
Confidence             4577899999999999999999999 554  3333332       223444443         7899999999998765


Q ss_pred             HHHhh-------hhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHHHHHh
Q 008435          518 LLTVS-------NIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       518 ~l~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                      ++...       ++.+++.+.+.+..  .....++|..++.+|...++..+
T Consensus       177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (252)
T 2ho1_A          177 VALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT  227 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence            44322       23333333222221  13466788888888887765544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.39  E-value=2.8e-12  Score=117.30  Aligned_cols=108  Identities=19%  Similarity=0.138  Sum_probs=97.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      ..+++.++.+|..+...|++++|+.+|+++++++|+++.+|+.+|.++...|++++|+++|++++++     +|++.   
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---   79 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV-----DPKYS---   79 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCH---
Confidence            3457889999999999999999999999999999999999999999999999999999999999765     45543   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                          .+++++|.++..+|++++|+++|++ +..++|+++..
T Consensus        80 ----~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~  115 (164)
T 3sz7_A           80 ----KAWSRLGLARFDMADYKGAKEAYEK-GIEAEGNGGSD  115 (164)
T ss_dssp             ----HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHSSSCCH
T ss_pred             ----HHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCchHH
Confidence                4688899999999999999999999 67788998863

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.39  E-value=2.6e-12  Score=131.96  Aligned_cols=180  Identities=13%  Similarity=0.089  Sum_probs=131.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----------
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF----------  434 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~----------  434 (565)
                      .+.++..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+++|++++++.-          
T Consensus        95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  174 (365)
T 4eqf_A           95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK  174 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----
T ss_pred             CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc
Confidence            3456888999999999999999999999999999999999999999999999999999999999987520          


Q ss_pred             -----------------------------hcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          435 -----------------------------LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       435 -----------------------------l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                                                   +..+|...     ...++..+|.++...|++++|++.|++ +...+|+++.
T Consensus       175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~~  248 (365)
T 4eqf_A          175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI-----DPDLQTGLGVLFHLSGEFNRAIDAFNA-ALTVRPEDYS  248 (365)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHSCSSC-----CHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTCHH
T ss_pred             cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc-----CHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHH
Confidence                                         00011100     123577789999999999999999999 6667888765


Q ss_pred             hhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhh-------hhhhHH---Hhhhhhhhhh--------
Q 008435          486 SKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVS-------NIIDII---YVNCYELKKK--------  538 (565)
Q Consensus       486 ~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~---~~~~~~~~~~--------  538 (565)
                      ...       .+|..+         +++++++++.+|+...++...       ++.+++   ++.+.+..+.        
T Consensus       249 ~~~-------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  321 (365)
T 4eqf_A          249 LWN-------RLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVP  321 (365)
T ss_dssp             HHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-------
T ss_pred             HHH-------HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccc
Confidence            433       444443         788999999999876544322       222222   2333333322        


Q ss_pred             ---hhhhhhccchhHHHHHHHH
Q 008435          539 ---RFASCFFGFSVLYVMLVAM  557 (565)
Q Consensus       539 ---~~~~~~~~~~~~~~~~~~~  557 (565)
                         ...++|.++|.+|..++..
T Consensus       322 ~~~~~~~~~~~l~~~~~~~g~~  343 (365)
T 4eqf_A          322 HPAISGNIWAALRIALSLMDQP  343 (365)
T ss_dssp             -----CHHHHHHHHHHHHHTCH
T ss_pred             hhhhHHHHHHHHHHHHHHcCcH
Confidence               1367888888888877643

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.39  E-value=3.2e-12  Score=129.05  Aligned_cols=179  Identities=18%  Similarity=0.139  Sum_probs=134.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++.     +|++.     
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-----   71 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMDFT-----   71 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcc-----
Confidence            57789999999999999999999999999999999999999999999999999999999999765     35433     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC---CCchhhhhhh-----hHHHHHHHHH---------HHHHHHHHh
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP---EEPKSKAHYY-----DGLVVLARYV---------ANITFLIFA  510 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P---~~~~~~~~~~-----~~~~~La~~l---------~~~l~~Al~  510 (565)
                        .++..+|.++...|++++|++.|++ +...+|   +++.....+.     .....+|..+         ++.++++++
T Consensus        72 --~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  148 (359)
T 3ieg_A           72 --AARLQRGHLLLKQGKLDEAEDDFKK-VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE  148 (359)
T ss_dssp             --HHHHHHHHHHHHHTCHHHHHHHHHH-HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHcCChHHHHHHHHH-HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence              4678899999999999999999999 666777   5554322110     0011113333         789999999


Q ss_pred             cCCCcHHHHHhh-------hhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHHHHHh
Q 008435          511 TSPSIINLLTVS-------NIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       511 l~P~~~~~l~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                      .+|+...++...       ++.+++.+.+.+..  .+...++|.++|.+|...++..+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  206 (359)
T 3ieg_A          149 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL  206 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred             hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            999876654332       33333333332222  24578899999999998876544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.39  E-value=1.6e-12  Score=114.86  Aligned_cols=110  Identities=10%  Similarity=0.019  Sum_probs=92.0

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008435          394 LALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLE  473 (565)
Q Consensus       394 ~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~le  473 (565)
                      ++..+||+.++++..+|..+++.|++++|+++|++|+++     +|.++       .++.++|.++..+|++++|++.|+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~   71 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENA-------ILYSNRAACLTKLMEFQRALDDCD   71 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHhhHHHhhccHHHHHHHHH
Confidence            456799999999999999999999999999999999765     46544       468889999999999999999999


Q ss_pred             HHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhhh
Q 008435          474 RIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVSN  523 (565)
Q Consensus       474 raa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~~  523 (565)
                      + +..++|+++....       .+|.++         +++|+++++++|++.+++....
T Consensus        72 ~-al~~~p~~~~a~~-------~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~  122 (126)
T 4gco_A           72 T-CIRLDSKFIKGYI-------RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR  122 (126)
T ss_dssp             H-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             H-HHHhhhhhhHHHH-------HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            9 6778999876533       444444         8999999999999998876654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.38  E-value=8.1e-12  Score=121.97  Aligned_cols=178  Identities=15%  Similarity=0.058  Sum_probs=129.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      ++..++.+|..+...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+++|+++++.     +|.+.     
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~-----  111 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN-----  111 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCT-----
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----Ccccc-----
Confidence            47788999999999999999999999999999999999999999999999999999999999765     35443     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhh---
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVS---  522 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~---  522 (565)
                        .++..+|.++...|++++|++.|++ +...+|+++....... .....+..-  .+.+++++..+|+....+...   
T Consensus       112 --~~~~~la~~~~~~g~~~~A~~~~~~-a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  187 (275)
T 1xnf_A          112 --YAHLNRGIALYYGGRDKLAQDDLLA-FYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY  187 (275)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence              4678899999999999999999999 6668888874322111 111111111  778888888888643222111   


Q ss_pred             ---hhhhHHHhhhhh---hhh---hhhhhhhccchhHHHHHHHHHh
Q 008435          523 ---NIIDIIYVNCYE---LKK---KRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       523 ---~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                         ...++..+.+..   ..+   .+..++|.++|.+|...++..+
T Consensus       188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  233 (275)
T 1xnf_A          188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS  233 (275)
T ss_dssp             TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence               111122222222   111   2347889999999988776544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.37  E-value=1e-11  Score=118.85  Aligned_cols=171  Identities=12%  Similarity=0.087  Sum_probs=127.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       362 ~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      +...+.+++.++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++.     +|.+
T Consensus        50 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~  124 (243)
T 2q7f_A           50 IEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMEN  124 (243)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCCS
T ss_pred             HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCC
Confidence            33445568899999999999999999999999999999999999999999999999999999999999765     3443


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcC
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATS  512 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~  512 (565)
                      .       .++..+|.++...|++++|++.+++ +...+|+++....       .+|..+         .++++++++.+
T Consensus       125 ~-------~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~~~~~~  189 (243)
T 2q7f_A          125 G-------DLFYMLGTVLVKLEQPKLALPYLQR-AVELNENDTEARF-------QFGMCLANEGMLDEALSQFAAVTEQD  189 (243)
T ss_dssp             H-------HHHHHHHHHHHHTSCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred             H-------HHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCccHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3       3577799999999999999999999 6667888775432       334333         78999999999


Q ss_pred             CCcHHHHHhhh-------hhhHHH---hhhhhhhhhhhhhhhccchhHHHH
Q 008435          513 PSIINLLTVSN-------IIDIIY---VNCYELKKKRFASCFFGFSVLYVM  553 (565)
Q Consensus       513 P~~~~~l~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  553 (565)
                      |+....+....       +.+++.   +.+.+.. +...+++.+++.+...
T Consensus       190 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKKLLGHH  239 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHTC----
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHHHHHhh
Confidence            98766543322       222222   2222222 3366666666665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.37  E-value=5.3e-12  Score=126.29  Aligned_cols=108  Identities=16%  Similarity=0.088  Sum_probs=63.9

Q ss_pred             CCCCHHHHHHHHHHHHHCC-CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          365 ENLTPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g-~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      .+.++..++.+|..+...| ++++|+.+++++++.+|+++.+|..+|.++...|++++|+++|+++++.     +|.+. 
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-  159 (330)
T 3hym_B           86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-----MKGCH-  159 (330)
T ss_dssp             CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----TTTCS-
T ss_pred             CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----ccccH-
Confidence            3344556666666666666 6666666666666666666666666666666666666666666666543     23221 


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                            .++..+|.++...|++++|++.+++ +...+|+++.
T Consensus       160 ------~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~  194 (330)
T 3hym_B          160 ------LPMLYIGLEYGLTNNSKLAERFFSQ-ALSIAPEDPF  194 (330)
T ss_dssp             ------HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCTTCHH
T ss_pred             ------HHHHHHHHHHHHHhhHHHHHHHHHH-HHHhCCCChH
Confidence                  2344466666666666666666666 4445555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.36  E-value=1.3e-12  Score=120.63  Aligned_cols=115  Identities=11%  Similarity=-0.000  Sum_probs=95.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhh--
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NIN-----ALILMGQTQLQKGLLEEAVEYLECAISKL--  433 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~-------~a~-----A~~~LG~~~~~~g~~~eA~~~~~rAl~l~--  433 (565)
                      .++.+...|..+...|++++|+..|++||+++|+       +..     +|.++|.++...|++++|+++|++||++.  
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            3678899999999999999999999999999999       544     99999999999999999999999998761  


Q ss_pred             hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       434 ~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      ....+|++.   .....++++.|.++..+|+++||++.|++ +..++|+|...
T Consensus        90 ~~e~~pd~~---~A~~~~~~~rG~aL~~lgr~eEAl~~y~k-Alel~p~d~~~  138 (159)
T 2hr2_A           90 RGELNQDEG---KLWISAVYSRALALDGLGRGAEAMPEFKK-VVEMIEERKGE  138 (159)
T ss_dssp             HCCTTSTHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHCCSC
T ss_pred             cccCCCchH---HHHHHHHHhHHHHHHHCCCHHHHHHHHHH-HHhcCCCcHHH
Confidence            112245432   11112339999999999999999999999 77789988754

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.36  E-value=5.3e-12  Score=123.51  Aligned_cols=174  Identities=13%  Similarity=0.078  Sum_probs=130.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      +.+++.++.+|..+...|++++|+..++++++ .|++    +.++..+|.++...|++++|+++|+++++.     +|.+
T Consensus        34 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~  107 (272)
T 3u4t_A           34 YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-----DTTR  107 (272)
T ss_dssp             CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC
T ss_pred             CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----Cccc
Confidence            33456788999999999999999999999999 4443    556999999999999999999999999765     3544


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHH-HHH--------HHHHHHHHhcC
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA-RYV--------ANITFLIFATS  512 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La-~~l--------~~~l~~Al~l~  512 (565)
                      .       .++..+|.++...|++++|++.|++ +...+|.++....       .+| ..+        .+.++++++.+
T Consensus       108 ~-------~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~a~~~~  172 (272)
T 3u4t_A          108 L-------DMYGQIGSYFYNKGNFPLAIQYMEK-QIRPTTTDPKVFY-------ELGQAYYYNKEYVKADSSFVKVLELK  172 (272)
T ss_dssp             T-------HHHHHHHHHHHHTTCHHHHHHHHGG-GCCSSCCCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             H-------HHHHHHHHHHHHccCHHHHHHHHHH-HhhcCCCcHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3       3677899999999999999999999 6667888875422       444 333        78999999999


Q ss_pred             CCcHHHHHhhh-------h------hhHHHhhhhhhh-------hhhhhhhhccchhHHHHHHHHHhh
Q 008435          513 PSIINLLTVSN-------I------IDIIYVNCYELK-------KKRFASCFFGFSVLYVMLVAMLKL  560 (565)
Q Consensus       513 P~~~~~l~~~~-------~------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  560 (565)
                      |+....+....       +      .-..++.+.+..       +....++|..+|.+|...++..+-
T Consensus       173 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99765432221       1      112233333322       222568999999999988765543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.36  E-value=6.8e-12  Score=108.45  Aligned_cols=109  Identities=10%  Similarity=0.028  Sum_probs=96.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      .+.++..++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++|+++++.     +|.++  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~--   84 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-----EPTFI--   84 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCch--
Confidence            35568899999999999999999999999999999999999999999999999999999999999765     35433  


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                           .+++.+|.++...|++++|+++|++ +...+|++...
T Consensus        85 -----~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~p~~~~~  120 (133)
T 2lni_A           85 -----KGYTRKAAALEAMKDYTKAMDVYQK-ALDLDSSCKEA  120 (133)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCGGGTHH
T ss_pred             -----HHHHHHHHHHHHHhhHHHHHHHHHH-HHHhCCCchHH
Confidence                 4678899999999999999999999 66677777644

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.36  E-value=8e-12  Score=117.77  Aligned_cols=173  Identities=12%  Similarity=0.029  Sum_probs=121.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      ++..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++.     +|.+.     
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-----   76 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-----KPDSA-----   76 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCh-----
Confidence            46778889999999999999999999999999999999999999999999999999999999764     34432     


Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHH
Q 008435          448 LIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIIN  517 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~-g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~  517 (565)
                        .++..+|.++... |++++|++.+++ +.. .|.++...    ..+..+|..+         .++++++++.+|+...
T Consensus        77 --~~~~~l~~~~~~~~~~~~~A~~~~~~-~~~-~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  148 (225)
T 2vq2_A           77 --EINNNYGWFLCGRLNRPAESMAYFDK-ALA-DPTYPTPY----IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP  148 (225)
T ss_dssp             --HHHHHHHHHHHTTTCCHHHHHHHHHH-HHT-STTCSCHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             --HHHHHHHHHHHHhcCcHHHHHHHHHH-HHc-CcCCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch
Confidence              3567789999999 999999999999 444 44444221    1223444444         7888999999998655


Q ss_pred             HHHhh-------hhhhHHH---hhhhhhhhhhhhhhhccchhHHHHHHHHH
Q 008435          518 LLTVS-------NIIDIIY---VNCYELKKKRFASCFFGFSVLYVMLVAML  558 (565)
Q Consensus       518 ~l~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (565)
                      ++...       ++.+++.   +...+..+....++|..++.+|...++..
T Consensus       149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (225)
T 2vq2_A          149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ  199 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence            43222       2222222   22222222146667766666666655443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.36  E-value=7.5e-13  Score=149.90  Aligned_cols=139  Identities=12%  Similarity=-0.050  Sum_probs=119.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       363 ~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      ...+.+++.++.+|..+.+.|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++|+++     +|+++
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~  501 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-----FPGEL  501 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCS
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh
Confidence            4456678899999999999999999999999999999999999999999999999999999999999765     46654


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCC
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSP  513 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P  513 (565)
                             .+++++|.++..+|++++ +++|++ +..++|+++....       ++|..+         +++|+++++++|
T Consensus       502 -------~~~~~lg~~~~~~g~~~~-~~~~~~-al~~~P~~~~a~~-------~lg~~~~~~g~~~~A~~~~~~al~l~P  565 (681)
T 2pzi_A          502 -------APKLALAATAELAGNTDE-HKFYQT-VWSTNDGVISAAF-------GLARARSAEGDRVGAVRTLDEVPPTSR  565 (681)
T ss_dssp             -------HHHHHHHHHHHHHTCCCT-TCHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHTSCTTST
T ss_pred             -------HHHHHHHHHHHHcCChHH-HHHHHH-HHHhCCchHHHHH-------HHHHHHHHcCCHHHHHHHHHhhcccCc
Confidence                   467889999999999999 999999 6778999886533       444444         789999999999


Q ss_pred             CcHHHHHhh
Q 008435          514 SIINLLTVS  522 (565)
Q Consensus       514 ~~~~~l~~~  522 (565)
                      ++..++...
T Consensus       566 ~~~~a~~~~  574 (681)
T 2pzi_A          566 HFTTARLTS  574 (681)
T ss_dssp             THHHHHHHH
T ss_pred             ccHHHHHHH
Confidence            988766443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.35  E-value=7.4e-12  Score=125.22  Aligned_cols=180  Identities=10%  Similarity=0.034  Sum_probs=131.3

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+.+...+.++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++.     +
T Consensus       115 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~  189 (330)
T 3hym_B          115 SKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-----A  189 (330)
T ss_dssp             HHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----C
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----C
Confidence            44455556678889999999999999999999999999999999999999999999999999999999999643     4


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh--hhhhhhHHHHHHHHH---------HHHHHH
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS--KAHYYDGLVVLARYV---------ANITFL  507 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~--~~~~~~~~~~La~~l---------~~~l~~  507 (565)
                      |.++       .++..+|.++...|++++|++.+++ +....|.....  .......+..+|..+         .+++++
T Consensus       190 ~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  261 (330)
T 3hym_B          190 PEDP-------FVMHEVGVVAFQNGEWKTAEKWFLD-ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ  261 (330)
T ss_dssp             TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCh-------HHHHHHHHHHHHcccHHHHHHHHHH-HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            5543       4677899999999999999999999 44343211100  001112333555554         789999


Q ss_pred             HHhcCCCcHHHHHhh-------hhhhHHHhhhhhh--hhhhhhhhhccchhHH
Q 008435          508 IFATSPSIINLLTVS-------NIIDIIYVNCYEL--KKKRFASCFFGFSVLY  551 (565)
Q Consensus       508 Al~l~P~~~~~l~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  551 (565)
                      +++.+|+...++...       ++.+++.+.+..+  ..+...+++..+|.+|
T Consensus       262 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          262 ALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             HHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            999999866544333       2222333222222  2244778888888877

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.35  E-value=3e-12  Score=145.01  Aligned_cols=166  Identities=11%  Similarity=0.024  Sum_probs=129.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHH--------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLAL--------NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL--------~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .++...+..|   ...|++++|++.+++++        +.+|+++++++.+|.++...|++++|++.|+++++..     
T Consensus       392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----  463 (681)
T 2pzi_A          392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----  463 (681)
T ss_dssp             TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----
T ss_pred             CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----
Confidence            3455555555   78899999999999999        9999999999999999999999999999999998753     


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--------HHHHHHHHh
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--------ANITFLIFA  510 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--------~~~l~~Al~  510 (565)
                      |+++       .+++++|.++..+|++++|++.|++ +..++|+++....       ++|.++        +++|+++++
T Consensus       464 p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~-al~l~P~~~~~~~-------~lg~~~~~~g~~~~~~~~~~al~  528 (681)
T 2pzi_A          464 GWRW-------RLVWYRAVAELLTGDYDSATKHFTE-VLDTFPGELAPKL-------ALAATAELAGNTDEHKFYQTVWS  528 (681)
T ss_dssp             CCCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSTTCSHHHH-------HHHHHHHHHTCCCTTCHHHHHHH
T ss_pred             cchH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHH-------HHHHHHHHcCChHHHHHHHHHHH
Confidence            6544       4788899999999999999999999 7779999986533       445444        568999999


Q ss_pred             cCCCcHHHHHhh-------hhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHH
Q 008435          511 TSPSIINLLTVS-------NIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLV  555 (565)
Q Consensus       511 l~P~~~~~l~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  555 (565)
                      ++|++..++...       ++.+++.+.+.++  ....+.++|+++|.+|...+
T Consensus       529 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          529 TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred             hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence            999987655333       3333443333332  23569999999999986533

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.34  E-value=2.7e-12  Score=117.69  Aligned_cols=114  Identities=11%  Similarity=-0.045  Sum_probs=93.0

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHH
Q 008435          390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI  469 (565)
Q Consensus       390 ~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi  469 (565)
                      ..++++++++|+++++++.+|.++.+.|++++|+++|++++++     +|+++       .+|+++|.++..+|++++|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~-------~~~~~lg~~~~~~g~~~~Ai   90 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNV-------DYIMGLAAIYQIKEQFQQAA   90 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHHHccHHHHH
Confidence            3467789999999999999999999999999999999999765     56655       46888999999999999999


Q ss_pred             HHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435          470 AHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII  516 (565)
Q Consensus       470 ~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~  516 (565)
                      +.|++ +..++|+++........++..++..-  +++|+++++++|+..
T Consensus        91 ~~~~~-al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           91 DLYAV-AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHH-HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHH-HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999 77799999976442222222222222  899999999999865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.34  E-value=6.1e-12  Score=126.55  Aligned_cols=105  Identities=16%  Similarity=0.110  Sum_probs=95.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      .+++.++.+|..+...|++++|+..|++|++.+|+++.+++.+|.++...|++++|++.|++|++     .+|++.    
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~----   72 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-----LDGQSV----   72 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----SCTTCH----
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCCH----
Confidence            46889999999999999999999999999999999999999999999999999999999999954     456554    


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                         .+++.+|.++..+|++++|++.|++ +..++|+++
T Consensus        73 ---~~~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~  106 (281)
T 2c2l_A           73 ---KAHFFLGQCQLEMESYDEAIANLQR-AYSLAKEQR  106 (281)
T ss_dssp             ---HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCccch
Confidence               4688899999999999999999999 666777765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.34  E-value=2.6e-12  Score=139.13  Aligned_cols=163  Identities=12%  Similarity=0.026  Sum_probs=128.7

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK---------GLLEEAVEYLECA  429 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~---------g~~~eA~~~~~rA  429 (565)
                      .+.+...+.+++.++.+|..+...|++++|+.+|++|++++|+ ..++..+|.++...         |++++|+++|++|
T Consensus       127 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a  205 (474)
T 4abn_A          127 SKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA  205 (474)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence            3444455667999999999999999999999999999999999 79999999999999         9999999999999


Q ss_pred             HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhhccCC---CCchhhhhhhhHHHHHH
Q 008435          430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ--------EKWEEGIAHLERIGNLKEP---EEPKSKAHYYDGLVVLA  498 (565)
Q Consensus       430 l~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~--------g~~~eAi~~leraa~~l~P---~~~~~~~~~~~~~~~La  498 (565)
                      +++     +|+++       .+++++|.++..+        |++++|+++|++ +..++|   +++....       .+|
T Consensus       206 l~~-----~p~~~-------~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~~~-------~lg  265 (474)
T 4abn_A          206 VQM-----DVLDG-------RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ-AEKVDRKASSNPDLHL-------NRA  265 (474)
T ss_dssp             HHH-----CTTCH-------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHCGGGGGCHHHHH-------HHH
T ss_pred             HHh-----CCCCH-------HHHHHHHHHHHHHHHhhccccchHHHHHHHHHH-HHHhCCCcccCHHHHH-------HHH
Confidence            765     46544       4688899999999        999999999999 666788   6665432       455


Q ss_pred             HHH---------HHHHHHHHhcCCCcHHHHHhh-------hhhhHHHhhhhhhhhhhhhh
Q 008435          499 RYV---------ANITFLIFATSPSIINLLTVS-------NIIDIIYVNCYELKKKRFAS  542 (565)
Q Consensus       499 ~~l---------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~  542 (565)
                      ..+         .++++++++++|++..++...       ++.+++++.+....++|..+
T Consensus       266 ~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~~~l~~  325 (474)
T 4abn_A          266 TLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQS  325 (474)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHH
Confidence            444         899999999999988655444       33334444444444454443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.34  E-value=2.6e-11  Score=121.08  Aligned_cols=183  Identities=12%  Similarity=0.056  Sum_probs=135.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +.++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++..     |.+....
T Consensus        52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~  126 (327)
T 3cv0_A           52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-----PQYEQLG  126 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TTTTTC-
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccHHHH
Confidence            33677888999999999999999999999999999999999999999999999999999999997642     2111000


Q ss_pred             ------------------------------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435          446 ------------------------------------------DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE  483 (565)
Q Consensus       446 ------------------------------------------~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~  483 (565)
                                                                +....++..+|.++...|++++|++.+++ +...+|++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~  205 (327)
T 3cv0_A          127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR-AVELRPDD  205 (327)
T ss_dssp             -------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTC
T ss_pred             HHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCCc
Confidence                                                      00123567799999999999999999999 66678887


Q ss_pred             chhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhh-------hhhhHHH---hhhhhhhhhh-----
Q 008435          484 PKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVS-------NIIDIIY---VNCYELKKKR-----  539 (565)
Q Consensus       484 ~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~---~~~~~~~~~~-----  539 (565)
                      +....       .+|..+         .++++++++.+|+....+...       ++.+++.   +.+.+..+..     
T Consensus       206 ~~~~~-------~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  278 (327)
T 3cv0_A          206 AQLWN-------KLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG  278 (327)
T ss_dssp             HHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred             HHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence            75432       344333         789999999999876544322       2222232   2333332221     


Q ss_pred             ------hhhhhccchhHHHHHHHHHhhh
Q 008435          540 ------FASCFFGFSVLYVMLVAMLKLR  561 (565)
Q Consensus       540 ------~~~~~~~~~~~~~~~~~~~~~~  561 (565)
                            ..++|.++|.+|..+++.-+-.
T Consensus       279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~  306 (327)
T 3cv0_A          279 EASREATRSMWDFFRMLLNVMNRPDLVE  306 (327)
T ss_dssp             --CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence                  6889999999999988665543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.32  E-value=2.6e-11  Score=109.17  Aligned_cols=107  Identities=15%  Similarity=0.097  Sum_probs=95.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      .++.++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+++|+++++.     +|.++     
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-----   81 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYI-----   81 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH-----
Confidence            36778999999999999999999999999999999999999999999999999999999999765     35433     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhh
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK  487 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~  487 (565)
                        .+++.+|.++...|++++|+++|++ +...+|+++...
T Consensus        82 --~~~~~~a~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~~  118 (166)
T 1a17_A           82 --KGYYRRAASNMALGKFRAALRDYET-VVKVKPHDKDAK  118 (166)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHH
T ss_pred             --HHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCCCHHHH
Confidence              4678899999999999999999999 666888887543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.31  E-value=1.5e-11  Score=107.79  Aligned_cols=105  Identities=16%  Similarity=0.121  Sum_probs=94.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      .+.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|++++++     +|+++  
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~--   77 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSV--   77 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CchhH--
Confidence            45578999999999999999999999999999999999999999999999999999999999999765     35443  


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                           .+++.+|.++...|++++|++.|++ +...+|+
T Consensus        78 -----~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~p~  109 (137)
T 3q49_B           78 -----KAHFFLGQCQLEMESYDEAIANLQR-AYSLAKE  109 (137)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhhHHHHHHHHHH-HHHHChh
Confidence                 4688899999999999999999999 5556666

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.30  E-value=4.3e-12  Score=115.23  Aligned_cols=119  Identities=13%  Similarity=0.102  Sum_probs=93.5

Q ss_pred             chHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHH
Q 008435          387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWE  466 (565)
Q Consensus       387 eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~  466 (565)
                      .+-..|+++++.+|++..+++.+|.++...|++++|+++|+++++.     +|.++       .+++++|.++..+|+++
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~g~~~   72 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDS-------RFFLGLGACRQAMGQYD   72 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccH-------HHHHHHHHHHHHHhhHH
Confidence            3345789999999999999999999999999999999999999765     46544       46788999999999999


Q ss_pred             HHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHH
Q 008435          467 EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINL  518 (565)
Q Consensus       467 eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~  518 (565)
                      +|++.|++ +..++|+++........++..++..-  +++|+++++++|+..+.
T Consensus        73 ~A~~~~~~-al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           73 LAIHSYSY-GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHHHHHH-HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHH-HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            99999999 67789999865332222222222222  78999999998875443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.30  E-value=5.8e-11  Score=127.64  Aligned_cols=94  Identities=16%  Similarity=0.197  Sum_probs=82.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      .++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|++.|+++++.     +|++.     
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~-----   93 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI-----KPDHS-----   93 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCchH-----
Confidence            36778999999999999999999999999999999999999999999999999999999999765     45543     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLE  473 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~le  473 (565)
                        .++..+|.++...|++++|++.|+
T Consensus        94 --~~~~~la~~~~~~g~~~~A~~~~~  117 (537)
T 3fp2_A           94 --KALLRRASANESLGNFTDAMFDLS  117 (537)
T ss_dssp             --HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHH
Confidence              457778888888888888888774

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.30  E-value=2.1e-11  Score=121.72  Aligned_cols=106  Identities=14%  Similarity=0.099  Sum_probs=93.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +++.++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++|+++++.     +|.+.     
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-----   89 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI-----   89 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcCCH-----
Confidence            34568999999999999999999999999999999999999999999999999999999999765     35433     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                        .++..+|.++...|++++|++.+++ +...+|.+...
T Consensus        90 --~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~  125 (327)
T 3cv0_A           90 --AVHAALAVSHTNEHNANAALASLRA-WLLSQPQYEQL  125 (327)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHTSTTTTTC
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCccHHH
Confidence              4577899999999999999999999 55677776643

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.30  E-value=6.7e-12  Score=126.54  Aligned_cols=143  Identities=13%  Similarity=0.062  Sum_probs=112.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      .+++.++.+|..+.+.|++++|+..|+++++.+|+++++++.+|.++.+.|++++|++.|+++++.     +|+ .    
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p~-~----  184 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQD-T----  184 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GCS-H----
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hcc-h----
Confidence            357889999999999999999999999999999999999999999999999999999999999543     342 1    


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCc--HHHHHhh
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSI--INLLTVS  522 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~--~~~l~~~  522 (565)
                        ...+...+..+...++.++|++.|++ +...+|+++.....+...+...+..-  ++.|+++++.+|++  ..++...
T Consensus       185 --~~~~~~~~~~l~~~~~~~~a~~~l~~-al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          185 --RYQGLVAQIELLXQAADTPEIQQLQQ-QVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             --HHHHHHHHHHHHHHHTSCHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             --HHHHHHHHHHHHhhcccCccHHHHHH-HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence              12345577778899999999999999 67789999865432222222222211  88999999999988  4444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.29  E-value=1.9e-11  Score=134.66  Aligned_cols=144  Identities=19%  Similarity=0.156  Sum_probs=116.9

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      .+...+.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|++++++     +|+
T Consensus        15 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~   89 (568)
T 2vsy_A           15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APE   89 (568)
T ss_dssp             ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCC
Confidence            344456678999999999999999999999999999999999999999999999999999999999999765     455


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH---HHHH--HHHHHHHHhcCCCc
Q 008435          441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL---ARYV--ANITFLIFATSPSI  515 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L---a~~l--~~~l~~Al~l~P~~  515 (565)
                      ++       .+++++|.++..+|++++|+++|++ +...+|+++.....+...+..+   +...  .+.++++++.+|+.
T Consensus        90 ~~-------~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           90 HP-------GIALWLGHALEDAGQAEAAAAAYTR-AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             CH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             CH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            43       4678899999999999999999999 6678999886544333333333   3222  78899999999985


Q ss_pred             HH
Q 008435          516 IN  517 (565)
Q Consensus       516 ~~  517 (565)
                      ..
T Consensus       162 ~~  163 (568)
T 2vsy_A          162 VE  163 (568)
T ss_dssp             SC
T ss_pred             cC
Confidence            43

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.29  E-value=1.5e-10  Score=116.69  Aligned_cols=183  Identities=14%  Similarity=0.088  Sum_probs=136.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +.+++.+..+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|++.|+++++.     +|++....
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~  225 (359)
T 3ieg_A          151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCF  225 (359)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CccchHHH
Confidence            3457889999999999999999999999999999999999999999999999999999999999765     45544211


Q ss_pred             hHH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhc
Q 008435          446 DLL-----IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFAT  511 (565)
Q Consensus       446 ~~~-----~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l  511 (565)
                      ...     ......+|.++...|++++|++.+++ +...+|+++..   ....+..+|..+         .++++++++.
T Consensus       226 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  301 (359)
T 3ieg_A          226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYES-VMKTEPSVAEY---TVRSKERICHCFSKDEKPVEAIRICSEVLQM  301 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCSSHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCchHH---HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            111     01234568899999999999999999 66678887643   223344555555         8999999999


Q ss_pred             CCCcHHHHHhh-------hhhhHHHhhh---hhhhhhhhhhhhccchhHHHHHHHHH
Q 008435          512 SPSIINLLTVS-------NIIDIIYVNC---YELKKKRFASCFFGFSVLYVMLVAML  558 (565)
Q Consensus       512 ~P~~~~~l~~~-------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (565)
                      +|+...++...       ++.+++.+.+   .+.. +...+++.+++.++..+....
T Consensus       302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHhc
Confidence            99876654332       2333333322   3232 447778888888888877554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.29  E-value=5.8e-11  Score=99.89  Aligned_cols=106  Identities=20%  Similarity=0.143  Sum_probs=94.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      .++.++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++++++++.     +|.++     
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-----   72 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWG-----   72 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----CcccH-----
Confidence            36778999999999999999999999999999999999999999999999999999999999765     35433     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                        .++..+|.++...|++++|++.+++ +...+|+++..
T Consensus        73 --~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~  108 (118)
T 1elw_A           73 --KGYSRKAAALEFLNRFEEAKRTYEE-GLKHEANNPQL  108 (118)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCTTCHHH
T ss_pred             --HHHHHHHHHHHHHhhHHHHHHHHHH-HHHcCCCCHHH
Confidence              4677899999999999999999999 66788888754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.28  E-value=3.5e-11  Score=127.76  Aligned_cols=183  Identities=13%  Similarity=0.011  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNK---------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~---------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      +..+..+|..+...|++++|+.+|++|+++         +|+.+.+|.++|.+|...|++++|+.+|++++++..-..++
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            445667999999999999999999999986         78899999999999999999999999999998764111222


Q ss_pred             CChhhhhHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-----HHHHHHHHhcC
Q 008435          440 TEPEAIDLLIVASQWSGVACIRQ--EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-----ANITFLIFATS  512 (565)
Q Consensus       440 ~~~~~~~~~~~a~~~lG~a~~~~--g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-----~~~l~~Al~l~  512 (565)
                      ...+.    ..++...|.++...  +++++|++.|++ +..++|+++.....+......++..-     ++.++++++++
T Consensus       131 ~~~~~----~~~~~~~g~~~~~~~~~~y~~A~~~~~k-al~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~  205 (472)
T 4g1t_A          131 YRIES----PELDCEEGWTRLKCGGNQNERAKVCFEK-ALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN  205 (472)
T ss_dssp             SCCCC----HHHHHHHHHHHHHHCTTHHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred             cchhh----HHHHHHHHHHHHHHccccHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence            21111    13466677777654  579999999999 77789999865433322222222211     78899999999


Q ss_pred             CCcHHHHHhhh--------------hhhHHHhhhhhhhhhhhhhhhccchhHHHHHHHH
Q 008435          513 PSIINLLTVSN--------------IIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAM  557 (565)
Q Consensus       513 P~~~~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (565)
                      |+...++....              +....++...+. .+...+++.++|.+|...++.
T Consensus       206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~  263 (472)
T 4g1t_A          206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEP  263 (472)
T ss_dssp             SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCH
T ss_pred             CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCch
Confidence            98765443221              111222222222 233566677777776665543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.28  E-value=3.5e-11  Score=127.73  Aligned_cols=177  Identities=13%  Similarity=0.021  Sum_probs=127.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc-------------------CCHHHHHHH
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-------------------GLLEEAVEY  425 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~-------------------g~~~eA~~~  425 (565)
                      .+.++..+..+|..+...|++++|+..+++|++.+|+++.+++.+|.+|...                   +.+++|+++
T Consensus       243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  322 (472)
T 4g1t_A          243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH  322 (472)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence            3456777888888888888888888888888888888888888888887543                   235677777


Q ss_pred             HHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH----
Q 008435          426 LECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV----  501 (565)
Q Consensus       426 ~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l----  501 (565)
                      |+++++.     +|.+.       .++..+|.++...|++++|++.|++ +...+|.+.....    ....+|...    
T Consensus       323 ~~~a~~~-----~~~~~-------~~~~~lg~~~~~~~~~~~A~~~~~k-aL~~~~~~~~~~~----~~~~~~~~~~~~~  385 (472)
T 4g1t_A          323 LKKADEA-----NDNLF-------RVCSILASLHALADQYEEAEYYFQK-EFSKELTPVAKQL----LHLRYGNFQLYQM  385 (472)
T ss_dssp             HHHHHHH-----CTTTC-------CCHHHHHHHHHHTTCHHHHHHHHHH-HHHSCCCHHHHHH----HHHHHHHHHHHTS
T ss_pred             HHHHhhc-----CCchh-------hhhhhHHHHHHHhccHHHHHHHHHH-HHhcCCCChHHHH----HHHHHHHHHHHHC
Confidence            7777554     34432       2466799999999999999999999 5556665543211    112333222    


Q ss_pred             ------HHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhhhhhhhhhhccchhHHHHHHHHHh
Q 008435          502 ------ANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       502 ------~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                            +++|+++++++|+.....+..+....+++...+.. ++.+++|.+||.+|...|+..+
T Consensus       386 ~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~  448 (472)
T 4g1t_A          386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQ  448 (472)
T ss_dssp             SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-
T ss_pred             CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence                  78999999999998776665555545544444433 4589999999999999987543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=4.3e-11  Score=105.53  Aligned_cols=113  Identities=14%  Similarity=0.050  Sum_probs=99.6

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008435          361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAG  437 (565)
Q Consensus       361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~  437 (565)
                      .....+.+++.++.+|..+...|++++|+.+|+++++.+|++   ..+++.+|.++...|++++|+++|+++++.     
T Consensus        20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----   94 (148)
T 2dba_A           20 PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-----   94 (148)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence            344445679999999999999999999999999999999998   999999999999999999999999999765     


Q ss_pred             CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      +|+++       .+++.+|.++...|++++|+++|++ +...+|+++..
T Consensus        95 ~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~-al~~~p~~~~~  135 (148)
T 2dba_A           95 DGGDV-------KALYRRSQALEKLGRLDQAVLDLQR-CVSLEPKNKVF  135 (148)
T ss_dssp             TSCCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCSSCHHH
T ss_pred             CccCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCcHHH
Confidence            35433       4678899999999999999999999 66688888754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.26  E-value=6.6e-11  Score=107.51  Aligned_cols=104  Identities=22%  Similarity=0.278  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      ++..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++.     +|.+.     
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-----  110 (186)
T 3as5_A           41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINF-----  110 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHhH-----
Confidence            35556666666666666666666666666666666666666666666666666666666666543     23222     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                        .++..+|.++...|++++|++.+++ +...+|.++
T Consensus       111 --~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~  144 (186)
T 3as5_A          111 --NVRFRLGVALDNLGRFDEAIDSFKI-ALGLRPNEG  144 (186)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCH
T ss_pred             --HHHHHHHHHHHHcCcHHHHHHHHHH-HHhcCccch
Confidence              2345566666666666666666666 444555554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.26  E-value=6e-11  Score=101.51  Aligned_cols=107  Identities=18%  Similarity=0.126  Sum_probs=95.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      .++..++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++.     +|+++    
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----   80 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-----DPAYS----   80 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH----
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----CccCH----
Confidence            356788999999999999999999999999999999999999999999999999999999999764     35433    


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                         .+++.+|.++...|++++|++.+++ +...+|+++..
T Consensus        81 ---~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~p~~~~~  116 (131)
T 2vyi_A           81 ---KAYGRMGLALSSLNKHVEAVAYYKK-ALELDPDNETY  116 (131)
T ss_dssp             ---HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHH
T ss_pred             ---HHHHHHHHHHHHhCCHHHHHHHHHH-HHhcCccchHH
Confidence               4678899999999999999999999 66688887754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.26  E-value=2.4e-11  Score=110.82  Aligned_cols=104  Identities=22%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNK------------------EPDNINALILMGQTQLQKGLLEEAVEYLECA  429 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~------------------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA  429 (565)
                      .++.+..+|..++..|++++|+..|++|++.                  +|.++.+|+.+|.++...|++++|+.++++|
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3677899999999999999999999999999                  8888899999999999999999999999999


Q ss_pred             HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       430 l~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      +++     +|+++       .+++.+|.++..+|++++|+..|++ +..++|+++
T Consensus        90 l~~-----~p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~-al~l~p~~~  131 (162)
T 3rkv_A           90 LKR-----EETNE-------KALFRRAKARIAAWKLDEAEEDLKL-LLRNHPAAA  131 (162)
T ss_dssp             HHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCGGGH
T ss_pred             Hhc-----CCcch-------HHHHHHHHHHHHHhcHHHHHHHHHH-HHhcCCCCH
Confidence            765     46544       5788999999999999999999999 666888876

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.26  E-value=1.2e-11  Score=133.17  Aligned_cols=176  Identities=16%  Similarity=0.145  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +..++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++|+++++.     +|++.      
T Consensus       276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~------  344 (537)
T 3fp2_A          276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-----NPENV------  344 (537)
T ss_dssp             HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCS------
T ss_pred             chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH------
Confidence            5667777888888888888888888888888888888888888888888888888888888654     34433      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH----------
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII----------  516 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~----------  516 (565)
                       .++..+|.++...|++++|++.+++ +...+|+++.....+...+...+..-  .++++++++.+|+..          
T Consensus       345 -~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  422 (537)
T 3fp2_A          345 -YPYIQLACLLYKQGKFTESEAFFNE-TKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI  422 (537)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence             3466678888888888888888888 55567777654332211111111111  677777777766432          


Q ss_pred             ---HHHHhh----------hhhhHHHh---hhhhhhhhhhhhhhccchhHHHHHHHHH
Q 008435          517 ---NLLTVS----------NIIDIIYV---NCYELKKKRFASCFFGFSVLYVMLVAML  558 (565)
Q Consensus       517 ---~~l~~~----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (565)
                         .++...          ++.+++..   .+.+.. +...++|.++|.+|...|+..
T Consensus       423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~  479 (537)
T 3fp2_A          423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKID  479 (537)
T ss_dssp             HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHH
Confidence               122222          33333332   222222 346677888888887766543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.25  E-value=2e-10  Score=120.79  Aligned_cols=182  Identities=13%  Similarity=0.087  Sum_probs=133.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      .++..+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++.     +|++.....
T Consensus       175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~  249 (450)
T 2y4t_A          175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFA  249 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred             CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHH
Confidence            367889999999999999999999999999999999999999999999999999999999999764     455432111


Q ss_pred             HH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcC
Q 008435          447 LL-----IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATS  512 (565)
Q Consensus       447 ~~-----~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~  512 (565)
                      ..     ......+|.++...|++++|++.|++ +...+|+++...   ...+..+|..+         +++++++++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  325 (450)
T 2y4t_A          250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYES-VMKTEPSIAEYT---VRSKERICHCFSKDEKPVEAIRVCSEVLQME  325 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCSSHHHH---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCcchHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            00     01123459999999999999999999 666888876421   22344555555         78999999999


Q ss_pred             CCcHHHHHhh-------hhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHH
Q 008435          513 PSIINLLTVS-------NIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAM  557 (565)
Q Consensus       513 P~~~~~l~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  557 (565)
                      |+...++...       ++.+++.+.+..+  ..+...++|.++|.++..+...
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  379 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS  379 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence            9876654332       2333333322222  2234677888888777666543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.25  E-value=9.2e-11  Score=113.25  Aligned_cols=110  Identities=15%  Similarity=0.153  Sum_probs=94.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ++++.++.+|..+...|++++|+..|+++++.+|++   ..+++.+|.++...|++++|++.|+++++.     +|+++.
T Consensus         2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~   76 (225)
T 2yhc_A            2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPN   76 (225)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTT
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCc
Confidence            468899999999999999999999999999999987   479999999999999999999999999765     465442


Q ss_pred             hhhHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHhhccCCCCchh
Q 008435          444 AIDLLIVASQWSGVACIR------------------QEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~------------------~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                          ...+++.+|.++..                  .|++++|+..|++ +....|+++..
T Consensus        77 ----~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~l~~~P~~~~a  132 (225)
T 2yhc_A           77 ----IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK-LVRGYPNSQYT  132 (225)
T ss_dssp             ----HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH-HHTTCTTCTTH
T ss_pred             ----HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH-HHHHCcCChhH
Confidence                12467888888876                  6799999999999 66788988754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.25  E-value=2.3e-11  Score=101.63  Aligned_cols=105  Identities=18%  Similarity=0.146  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC--Chhh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT--EPEA  444 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~--~~~~  444 (565)
                      .+++.++.+|..+...|++++|+.+++++++.+|++..+++.+|.++...|++++|+++|+++++.     +|.  +.  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~--   76 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-----IEDEYNK--   76 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----SCCTTCH--
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccchH--
Confidence            346678899999999999999999999999999999999999999999999999999999999764     454  33  


Q ss_pred             hhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhccCCCCc
Q 008435          445 IDLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~-g~~~eAi~~leraa~~l~P~~~  484 (565)
                           .++..+|.++... |++++|++++++ +...+|.++
T Consensus        77 -----~~~~~l~~~~~~~~~~~~~A~~~~~~-~~~~~p~~~  111 (112)
T 2kck_A           77 -----DVWAAKADALRYIEGKEVEAEIAEAR-AKLEHHHHH  111 (112)
T ss_dssp             -----HHHHHHHHHHTTCSSCSHHHHHHHHH-HGGGCCCCC
T ss_pred             -----HHHHHHHHHHHHHhCCHHHHHHHHHH-HhhcccCCC
Confidence                 4678899999999 999999999999 666777654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.24  E-value=2.5e-10  Score=110.31  Aligned_cols=135  Identities=16%  Similarity=0.074  Sum_probs=111.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      ++..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++      .+.++    .
T Consensus        70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~----~  139 (252)
T 2ho1_A           70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYP----E  139 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCT----T
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCc----c
Confidence            4678899999999999999999999999999999999999999999999999999999999953      11112    1


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHH
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINL  518 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~  518 (565)
                      ...++..+|.++...|++++|++++++ +...+|.++....       .++..+         .++++++++.+|+....
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~-------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  211 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEK-SLRLNRNQPSVAL-------EMADLLYKEREYVPARQYYDLFAQGGGQNARS  211 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCcccHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence            124677899999999999999999999 6667888765432       344333         78999999999987765


Q ss_pred             HH
Q 008435          519 LT  520 (565)
Q Consensus       519 l~  520 (565)
                      +.
T Consensus       212 ~~  213 (252)
T 2ho1_A          212 LL  213 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.24  E-value=7.5e-11  Score=100.97  Aligned_cols=125  Identities=21%  Similarity=0.282  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      +.++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++|+++++.     +|.+.       
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------   69 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSA-------   69 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-------
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCch-------
Confidence            457788999999999999999999999999999999999999999999999999999999764     34332       


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCC
Q 008435          450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPS  514 (565)
Q Consensus       450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~  514 (565)
                      .++..+|.++...|++++|++.+++ +...+|.++....       .++..+         .++++++++.+|+
T Consensus        70 ~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~-------~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYDEAIEYYQK-ALELDPRSAEAWY-------NLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCCCChHHHH-------HHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            3567799999999999999999999 5557777764322       344433         6777888877775

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.24  E-value=6.1e-11  Score=119.44  Aligned_cols=142  Identities=11%  Similarity=-0.020  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~-g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      +..+..+|..+...|++++|+.+|++|++++|+.      +.++..+|.+|... |++++|+++|++|+++.     |.+
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~-----~~~  151 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY-----AQD  151 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-----HHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-----HhC
Confidence            5678899999999999999999999999998865      67999999999996 99999999999998764     211


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcC
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATS  512 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~  512 (565)
                      . .......++.++|.++..+|++++|+++|++ +...+|+++.........+..+|.++         +++++++++++
T Consensus       152 ~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  229 (292)
T 1qqe_A          152 Q-SVALSNKCFIKCADLKALDGQYIEASDIYSK-LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (292)
T ss_dssp             T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             C-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            1 1112234678899999999999999999999 66677777643211112333445444         78999999999


Q ss_pred             CCcHH
Q 008435          513 PSIIN  517 (565)
Q Consensus       513 P~~~~  517 (565)
                      |++..
T Consensus       230 p~~~~  234 (292)
T 1qqe_A          230 PNFAD  234 (292)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            98765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.24  E-value=8.5e-11  Score=106.77  Aligned_cols=131  Identities=11%  Similarity=0.188  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ...++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++++++++.     +|.+.      
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------   76 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-----APDNV------   76 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH------
Confidence            5667889999999999999999999999999999999999999999999999999999999764     34432      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL  519 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l  519 (565)
                       .++..+|.++...|++++|++++++ +...+|.++....       .+|..+         .++++++++.+|+....+
T Consensus        77 -~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~-------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  147 (186)
T 3as5_A           77 -KVATVLGLTYVQVQKYDLAVPLLIK-VAEANPINFNVRF-------RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVH  147 (186)
T ss_dssp             -HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             -HHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCcHhHHHHH-------HHHHHHHHcCcHHHHHHHHHHHHhcCccchHHH
Confidence             4577899999999999999999999 6667888765432       333333         788899999988876544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.24  E-value=1.6e-10  Score=113.44  Aligned_cols=148  Identities=14%  Similarity=0.046  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhhhhcC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQ--------KGLLEEAVEYLECAISKLFLAG  437 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~--------~g~~~eA~~~~~rAl~l~~l~~  437 (565)
                      ++.++.+|..+...|++++|+..|+++++.+|++   ..+++.+|.++..        .|++++|++.|+++++.     
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----  126 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----  126 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----
Confidence            7889999999999999999999999999998854   7899999999999        99999999999999765     


Q ss_pred             CCCChhhhhH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh-hhhhhh--HHHHH-------
Q 008435          438 HPTEPEAIDL----------LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS-KAHYYD--GLVVL-------  497 (565)
Q Consensus       438 ~P~~~~~~~~----------~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~-~~~~~~--~~~~L-------  497 (565)
                      +|++......          ....++.+|.+|...|++++|+..|++ +...+|+++.. ..++..  ++..+       
T Consensus       127 ~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~  205 (261)
T 3qky_A          127 YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA-VFDAYPDTPWADDALVGAMRAYIAYAEQSVRA  205 (261)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG
T ss_pred             CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHCCCCchHHHHHHHHHHHHHHhcccchhh
Confidence            4654321111          011237899999999999999999999 66678886532 122222  22222       


Q ss_pred             ---HHHH--HHHHHHHHhcCCCcHHHHHhh
Q 008435          498 ---ARYV--ANITFLIFATSPSIINLLTVS  522 (565)
Q Consensus       498 ---a~~l--~~~l~~Al~l~P~~~~~l~~~  522 (565)
                         +..-  ++.++++++.+|+...+....
T Consensus       206 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  235 (261)
T 3qky_A          206 RQPERYRRAVELYERLLQIFPDSPLLRTAE  235 (261)
T ss_dssp             GHHHHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHCCCChHHHHHH
Confidence               2222  788999999999986554443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.24  E-value=3.1e-11  Score=104.62  Aligned_cols=107  Identities=17%  Similarity=0.180  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a---~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      +.++.+|..+...|++++|+..|+++++.+|++.   .+++.+|.++...|++++|+++|+++++.     +|++..   
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~---   74 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDK---   74 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTT---
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcc---
Confidence            3578999999999999999999999999999998   89999999999999999999999999765     354421   


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                       ...+++++|.++..+|++++|++.|++ +....|+++..
T Consensus        75 -~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~p~~~~~  112 (129)
T 2xev_A           75 -AAGGLLKLGLSQYGEGKNTEAQQTLQQ-VATQYPGSDAA  112 (129)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTSHHH
T ss_pred             -cHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCChHH
Confidence             124688899999999999999999999 66678887643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.24  E-value=1.1e-10  Score=120.67  Aligned_cols=110  Identities=10%  Similarity=0.087  Sum_probs=98.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAI  430 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---------------a~A~~~LG~~~~~~g~~~eA~~~~~rAl  430 (565)
                      +.++..+..+|..+...|++++|+.+|++|++++|++               +.+|+.+|.++...|++++|+++|++|+
T Consensus       144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3457788999999999999999999999999999999               7999999999999999999999999997


Q ss_pred             HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       431 ~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                      ++     +|+++       .+++++|.++..+|++++|++.|++ +..++|+++....
T Consensus       224 ~~-----~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~-al~l~P~~~~a~~  268 (336)
T 1p5q_A          224 EL-----DSNNE-------KGLSRRGEAHLAVNDFELARADFQK-VLQLYPNNKAAKT  268 (336)
T ss_dssp             HH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSSCHHHHH
T ss_pred             Hh-----CCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHH-HHHHCCCCHHHHH
Confidence            65     46543       4788999999999999999999999 7778999886543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.23  E-value=7.4e-11  Score=108.69  Aligned_cols=116  Identities=12%  Similarity=0.087  Sum_probs=64.9

Q ss_pred             HHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHH-
Q 008435          380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA-  458 (565)
Q Consensus       380 ~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a-  458 (565)
                      ...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+++|+++++..     |+++       .++..+|.+ 
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~-------~~~~~la~~l   88 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GENA-------ELYAALATVL   88 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSCH-------HHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCH-------HHHHHHHHHH
Confidence            345666666666666666666666666666666666666666666666665442     3322       244556666 


Q ss_pred             HHHcCCH--HHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCc
Q 008435          459 CIRQEKW--EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSI  515 (565)
Q Consensus       459 ~~~~g~~--~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~  515 (565)
                      +...|++  ++|++.+++ +...+|+++....       .+|..+         .++++++++.+|+.
T Consensus        89 ~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~-------~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           89 YYQASQHMTAQTRAMIDK-ALALDSNEITALM-------LLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHTTTCCCHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHhcCCcchHHHHHHHHH-HHHhCCCcHHHHH-------HHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            5566666  666666666 4445665553322       223222         55666666666653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.23  E-value=1.1e-10  Score=127.67  Aligned_cols=179  Identities=8%  Similarity=-0.043  Sum_probs=112.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +.++..+..+|..+...|++++|+..|+++++.+|++..+|..+|.++.+.|++++|++.|+++++.     +|++.   
T Consensus       370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---  441 (597)
T 2xpi_A          370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-----FQGTH---  441 (597)
T ss_dssp             TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TTTCS---
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccch---
Confidence            3457778888888888888888888888888888888888888888888888888888888888653     34332   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhc------CCCc-H
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFAT------SPSI-I  516 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l------~P~~-~  516 (565)
                          .++..+|.+|.+.|++++|++.|++ +...+|.++.........+...+...  .+.++++++.      +|+. .
T Consensus       442 ----~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~  516 (597)
T 2xpi_A          442 ----LPYLFLGMQHMQLGNILLANEYLQS-SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA  516 (597)
T ss_dssp             ----HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence                3455677777777777777777777 45566666643221111111111111  5667777766      5542 2


Q ss_pred             HHH-------HhhhhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHHHH
Q 008435          517 NLL-------TVSNIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLVAM  557 (565)
Q Consensus       517 ~~l-------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  557 (565)
                      ..+       ...++.+++.+.+.++.  .+..+++|..+|.+|...|+.
T Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  566 (597)
T 2xpi_A          517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP  566 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence            222       22223333322222221  133566777777777766543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.23  E-value=1.3e-10  Score=99.52  Aligned_cols=107  Identities=17%  Similarity=0.161  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ++.++.+|..+...|++++|+.+++++++.+|+++.+++.+|.++...|++++|+++|+++++..     |.+.......
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~   78 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-----RENREDYRQI   78 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHSTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-----cccchhHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999998763     2211111122


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      ..+++.+|.++...|++++|+++|++ +...+|
T Consensus        79 ~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~  110 (131)
T 1elr_A           79 AKAYARIGNSYFKEEKYKDAIHFYNK-SLAEHR  110 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHH-HHHhCC
Confidence            45788899999999999999999999 555666

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.22  E-value=8.7e-11  Score=118.98  Aligned_cols=189  Identities=10%  Similarity=-0.003  Sum_probs=135.0

Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHH-------CCCC-------CchHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHH
Q 008435          358 KQLKISVENLTPKELIALSVKFLS-------KGDK-------ERPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEA  422 (565)
Q Consensus       358 ~~~~~~~~~~~~~~l~~lA~~l~~-------~g~~-------~eAi~~l~~AL~-~dP~~a~A~~~LG~~~~~~g~~~eA  422 (565)
                      +.+.+...+.+++.++..|..+..       .|+.       ++|+..|++|++ ++|++..+|..+|.++...|++++|
T Consensus        39 ~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A  118 (308)
T 2ond_A           39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV  118 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence            345555567789999999988763       5887       899999999999 7999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH---HH
Q 008435          423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL---AR  499 (565)
Q Consensus       423 ~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L---a~  499 (565)
                      .+.|+++++     .+|.+++      .++..+|.++.+.|++++|++.|++ +...+|.+...  +...+....   +.
T Consensus       119 ~~~~~~al~-----~~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~--~~~~a~~~~~~~~~  184 (308)
T 2ond_A          119 HSIYNRLLA-----IEDIDPT------LVYIQYMKFARRAEGIKSGRMIFKK-AREDARTRHHV--YVTAALMEYYCSKD  184 (308)
T ss_dssp             HHHHHHHHT-----SSSSCTH------HHHHHHHHHHHHHHCHHHHHHHHHH-HHTSTTCCTHH--HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHh-----ccccCcc------HHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCCCCHHH--HHHHHHHHHHHcCC
Confidence            999999964     3565441      2577789999999999999999999 66677776543  222222111   11


Q ss_pred             HH--HHHHHHHHhcCCCcHHHHHhh-------hhhhHHH---hhhhhh--hh-hhhhhhhccchhHHHHHHHHHhh
Q 008435          500 YV--ANITFLIFATSPSIINLLTVS-------NIIDIIY---VNCYEL--KK-KRFASCFFGFSVLYVMLVAMLKL  560 (565)
Q Consensus       500 ~l--~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~---~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~  560 (565)
                      .-  .+.|+++++.+|+...++...       ++.+++.   +.+.+.  .+ ....+.|.+++..+...|+..+.
T Consensus       185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a  260 (308)
T 2ond_A          185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI  260 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            11  789999999999877665333       2222332   333332  12 24667888888777776654433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.21  E-value=2.2e-11  Score=108.94  Aligned_cols=116  Identities=15%  Similarity=0.104  Sum_probs=89.6

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHH
Q 008435          390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI  469 (565)
Q Consensus       390 ~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi  469 (565)
                      ..|+++++.+|++..+++.+|.++...|++++|+++|+++++.     +|+++       .+++.+|.++...|++++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~g~~~~A~   72 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDA-------RYFLGLGACRQSLGLYEQAL   72 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccH-------HHHHHHHHHHHHHhhHHHHH
Confidence            5788899999999999999999999999999999999999765     46544       46788999999999999999


Q ss_pred             HHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHH
Q 008435          470 AHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINL  518 (565)
Q Consensus       470 ~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~  518 (565)
                      +.|++ +..++|+++........++..++..-  .++++++++++|+..+.
T Consensus        73 ~~~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  122 (142)
T 2xcb_A           73 QSYSY-GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH  122 (142)
T ss_dssp             HHHHH-HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHH-HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence            99999 67789999865432222222222222  78999999998865543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.21  E-value=8.7e-11  Score=113.01  Aligned_cols=135  Identities=16%  Similarity=0.145  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHcCCHHHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALN--------------------------KEPDNINALILMGQTQLQKGLLEEA  422 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~--------------------------~dP~~a~A~~~LG~~~~~~g~~~eA  422 (565)
                      +..++.+|..+...|++++|+..++++++                          .+|+++.++..+|.++...|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            56788999999999999999999999999                          7888899999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-
Q 008435          423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-  501 (565)
Q Consensus       423 ~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-  501 (565)
                      +++|+++++.     +|.++       .++..+|.++...|++++|++.+++ +...+|+++....       .+|..+ 
T Consensus       159 ~~~~~~a~~~-----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~-------~l~~~~~  218 (258)
T 3uq3_A          159 VKAYTEMIKR-----APEDA-------RGYSNRAAALAKLMSFPEAIADCNK-AIEKDPNFVRAYI-------RKATAQI  218 (258)
T ss_dssp             HHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHH
T ss_pred             HHHHHHHHhc-----CcccH-------HHHHHHHHHHHHhCCHHHHHHHHHH-HHHhCHHHHHHHH-------HHHHHHH
Confidence            9999999765     34433       4677899999999999999999999 6668888775433       444443 


Q ss_pred             --------HHHHHHHHhcC------CCcHHHHHhhh
Q 008435          502 --------ANITFLIFATS------PSIINLLTVSN  523 (565)
Q Consensus       502 --------~~~l~~Al~l~------P~~~~~l~~~~  523 (565)
                              .++++++++++      |+..+++....
T Consensus       219 ~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~  254 (258)
T 3uq3_A          219 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY  254 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence                    78889999998      77666655543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.21  E-value=1.5e-10  Score=109.09  Aligned_cols=105  Identities=13%  Similarity=0.044  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----------------NALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a----------------~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      ++.+..+|..+...|++++|+.+|+++++.+|+++                .+++.+|.++...|++++|+++|+++++.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45678999999999999999999999999999997                99999999999999999999999999765


Q ss_pred             hhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                           +|++.       .+++.+|.++..+|++++|+++|++ +..++|+++..
T Consensus       118 -----~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~p~~~~~  158 (198)
T 2fbn_A          118 -----DKNNV-------KALYKLGVANMYFGFLEEAKENLYK-AASLNPNNLDI  158 (198)
T ss_dssp             -----STTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSTTCHHH
T ss_pred             -----CcccH-------HHHHHHHHHHHHcccHHHHHHHHHH-HHHHCCCcHHH
Confidence                 35443       4688899999999999999999999 66688887754

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.21  E-value=2.9e-10  Score=106.90  Aligned_cols=141  Identities=14%  Similarity=0.112  Sum_probs=111.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~-g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      ++..++.+|..+...|++++|+..++++++.+|++..++..+|.++... |++++|+++|+++++      .|.++.   
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~---  111 (225)
T 2vq2_A           41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPT---  111 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSC---
T ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcc---
Confidence            4678899999999999999999999999999999999999999999999 999999999999964      222221   


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCC-CcHHHH
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSP-SIINLL  519 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P-~~~~~l  519 (565)
                       ...++..+|.++...|++++|++.+++ +...+|+++.........+...+...  .+.++++++.+| +....+
T Consensus       112 -~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  185 (225)
T 2vq2_A          112 -PYIANLNKGICSAKQGQFGLAEAYLKR-SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL  185 (225)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             -hHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence             124677899999999999999999999 66678887654332222222222211  788999999999 776654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.20  E-value=1.4e-10  Score=117.20  Aligned_cols=143  Identities=10%  Similarity=-0.010  Sum_probs=110.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT--QLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~--~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      .+++.+..+|..+.+.|++++|+..++++++.+|++.......|.+  +...|++++|++.|+++++.     +|+++  
T Consensus       128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p~~~--  200 (291)
T 3mkr_A          128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CSPTL--  200 (291)
T ss_dssp             CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SCCCH--
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CCCcH--
Confidence            3578899999999999999999999999999999998666655543  33458999999999999764     45543  


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---HHHHHHHHhcCCCcHHHHHh
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---ANITFLIFATSPSIINLLTV  521 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---~~~l~~Al~l~P~~~~~l~~  521 (565)
                           .++..+|.++..+|++++|++.|++ +...+|+++.....+...+..+|...   .++++++++++|++..+..-
T Consensus       201 -----~~~~~la~~~~~~g~~~eA~~~l~~-al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          201 -----LLLNGQAACHMAQGRWEAAEGVLQE-ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence                 4678899999999999999999999 67789999876432211111111111   47889999999998877654


Q ss_pred             h
Q 008435          522 S  522 (565)
Q Consensus       522 ~  522 (565)
                      .
T Consensus       275 ~  275 (291)
T 3mkr_A          275 R  275 (291)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.20  E-value=2.5e-11  Score=104.85  Aligned_cols=93  Identities=14%  Similarity=0.215  Sum_probs=79.3

Q ss_pred             HCCCCCchHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008435          381 SKGDKERPIPLLQLALNK---EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV  457 (565)
Q Consensus       381 ~~g~~~eAi~~l~~AL~~---dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~  457 (565)
                      ..|++++|+.+|+++++.   +|+++.+++.+|.++...|++++|+++|+++++.     +|+++       .+++++|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNHQ-------ALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCch-------HHHHHHHH
Confidence            468999999999999999   7999999999999999999999999999999765     46543       46788999


Q ss_pred             HHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          458 ACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       458 a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      ++...|++++|++.+++ +...+|+++..
T Consensus        70 ~~~~~g~~~~A~~~~~~-al~~~p~~~~~   97 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLK-IIAETSDDETI   97 (117)
T ss_dssp             HHHHHTCHHHHHHHHHH-HHHHHCCCHHH
T ss_pred             HHHHcCCHHHHHHHHHH-HHHhCCCcHHH
Confidence            99999999999999999 66688888754

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.20  E-value=2.6e-10  Score=96.64  Aligned_cols=105  Identities=24%  Similarity=0.380  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +..++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+.+|+++++.     +|.+.      
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------   77 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA------   77 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCccH------
Confidence            6788999999999999999999999999999999999999999999999999999999999764     34432      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                       .++..+|.++...|++++|+.++++ +...+|+++..
T Consensus        78 -~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~  113 (125)
T 1na0_A           78 -EAWYNLGNAYYKQGDYDEAIEYYQK-ALELDPNNAEA  113 (125)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHH
T ss_pred             -HHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCCCcHHH
Confidence             3567799999999999999999999 66688888754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.18  E-value=2.1e-10  Score=113.14  Aligned_cols=94  Identities=15%  Similarity=0.123  Sum_probs=67.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      .+++.++.+|..+...|++++|+.+|+++++  |+++.+++.+|.++..    .+++++|+++|+++++..       + 
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------~-   73 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------Y-   73 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C-
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------C-
Confidence            3567777788888888888888888888877  7777888888888887    788888888888876431       1 


Q ss_pred             hhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Q 008435          443 EAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIG  476 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa  476 (565)
                            ..+++.+|.++..    .|++++|+++|++++
T Consensus        74 ------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~  105 (273)
T 1ouv_A           74 ------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC  105 (273)
T ss_dssp             ------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH
Confidence                  1345667777776    777777777777733

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.18  E-value=7.1e-11  Score=112.89  Aligned_cols=125  Identities=18%  Similarity=0.245  Sum_probs=96.4

Q ss_pred             HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHH
Q 008435          375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW  454 (565)
Q Consensus       375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~  454 (565)
                      +|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+++|++++++     +|+++       .++++
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~-------~a~~~  127 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNL-------AANIF  127 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-------HHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH-------HHHHH
Confidence            9999999999999999999999999999999999999999999999999999999765     56654       46888


Q ss_pred             HHHHHHHcCC--HHHHHHHHHHHhhccCCCCchhhhhhhhHHHH--HHHHH--HHHHHHHHhcCCCc
Q 008435          455 SGVACIRQEK--WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV--LARYV--ANITFLIFATSPSI  515 (565)
Q Consensus       455 lG~a~~~~g~--~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~--La~~l--~~~l~~Al~l~P~~  515 (565)
                      +|.+|...|+  .+++...+++ +.  +|. +....+|..+...  ++..-  +++|+++++++|+.
T Consensus       128 lg~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          128 LGNYYYLTAEQEKKKLETDYKK-LS--SPT-KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------CCC-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHH-Hh--CCC-chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            9999877765  4556777777 33  332 2222334333332  22222  89999999999985

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.18  E-value=2.3e-10  Score=115.70  Aligned_cols=167  Identities=11%  Similarity=0.068  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNK--EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~--dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      ...+..++..+...|+.++|+..+++.++.  +|+++.+++.+|.++.+.|++++|+++|++.          .+.    
T Consensus        65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~----------~~~----  130 (291)
T 3mkr_A           65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG----------DSL----  130 (291)
T ss_dssp             HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTC----------CSH----
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC----------CCH----
Confidence            344455566666666677777777776664  4777777777777777777777777766551          111    


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHH----HHH--HHHHHHHHhcCCCcHHHHH
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA----RYV--ANITFLIFATSPSIINLLT  520 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La----~~l--~~~l~~Al~l~P~~~~~l~  520 (565)
                         .++..+|.++..+|++++|++.|++ +...+|++...  .+..++..+.    ..-  .+.++++++.+|+...++.
T Consensus       131 ---~~~~~l~~~~~~~g~~~~A~~~l~~-~~~~~p~~~~~--~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~  204 (291)
T 3mkr_A          131 ---ECMAMTVQILLKLDRLDLARKELKK-MQDQDEDATLT--QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN  204 (291)
T ss_dssp             ---HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHH--HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             ---HHHHHHHHHHHHCCCHHHHHHHHHH-HHhhCcCcHHH--HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH
Confidence               2455566777777777777777777 44455554321  1122222221    111  5666777777776554332


Q ss_pred             -------hhhhhhHHHhhhhh--hhhhhhhhhhccchhHHHHHH
Q 008435          521 -------VSNIIDIIYVNCYE--LKKKRFASCFFGFSVLYVMLV  555 (565)
Q Consensus       521 -------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  555 (565)
                             ..++.+++.+.+.+  ...+.++++++++|+++..+|
T Consensus       205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG  248 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence                   22233333222222  112446667777777766655

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.18  E-value=1.9e-10  Score=108.62  Aligned_cols=131  Identities=15%  Similarity=0.074  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +..++.+|..+...|++++|+..|++++  +| ++.+++.+|.++...|++++|+++|+++++.     +|+++      
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~------   71 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHLA------   71 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccch------
Confidence            4457788888889999999999999885  44 7889999999999999999999999999764     34433      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh---------hhhhhhHHHHHHHHH---------HHHHHHHHh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS---------KAHYYDGLVVLARYV---------ANITFLIFA  510 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~---------~~~~~~~~~~La~~l---------~~~l~~Al~  510 (565)
                       .+++.+|.++...|++++|++.|++ +....|++...         ......++..+|..+         .++++++++
T Consensus        72 -~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           72 -VAYFQRGMLYYQTEKYDLAIKDLKE-ALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHcccHHHHHHHHHH-HHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence             4677889999999999999999998 55567765510         001112334555554         788889999


Q ss_pred             cCCCc
Q 008435          511 TSPSI  515 (565)
Q Consensus       511 l~P~~  515 (565)
                      ++|+.
T Consensus       150 ~~p~~  154 (213)
T 1hh8_A          150 MKSEP  154 (213)
T ss_dssp             TCCSG
T ss_pred             cCccc
Confidence            98875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.18  E-value=3.2e-11  Score=124.63  Aligned_cols=158  Identities=11%  Similarity=0.076  Sum_probs=116.7

Q ss_pred             HCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh--------hhhhHHHHHH
Q 008435          381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--------EAIDLLIVAS  452 (565)
Q Consensus       381 ~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~--------~~~~~~~~a~  452 (565)
                      ..+++++|+..++++++.+|+++.+++.+|.++...|++++|+++|++|+++.     |.+.        +..+....++
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~~~~  199 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-----EYESSFSNEEAQKAQALRLASH  199 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-----TTCCCCCSHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-----hccccCChHHHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999998753     4431        0111223578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHh
Q 008435          453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYV  530 (565)
Q Consensus       453 ~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~  530 (565)
                      .++|.++..+|++++|+++|++ +..++|+++........++..++..-  +++|+++++++|+...++...........
T Consensus       200 ~nla~~~~~~g~~~~A~~~~~~-al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~  278 (336)
T 1p5q_A          200 LNLAMCHLKLQAFSAAIESCNK-ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  278 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8999999999999999999999 67789998755332221221222111  88999999999999887776655544444


Q ss_pred             hhhhhhhhhhhhhh
Q 008435          531 NCYELKKKRFASCF  544 (565)
Q Consensus       531 ~~~~~~~~~~~~~~  544 (565)
                      .+.++.++.|.+++
T Consensus       279 ~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          279 RQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444455555544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.18  E-value=2.2e-10  Score=125.14  Aligned_cols=178  Identities=12%  Similarity=0.022  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ...+..++..+...|++++|+..++++++.+|+++.+++.+|.+|...|++++|+++|+++++.     +|.+.      
T Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~------  407 (597)
T 2xpi_A          339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-----DPQFG------  407 (597)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCH------
Confidence            4445666677777777777777777778888888899999999999999999999999998654     34433      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHH------
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLT------  520 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~------  520 (565)
                       .++..+|.++.+.|++++|++.|++ +...+|+++.........+...+...  .+.++++++.+|+....+.      
T Consensus       408 -~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  485 (597)
T 2xpi_A          408 -PAWIGFAHSFAIEGEHDQAISAYTT-AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA  485 (597)
T ss_dssp             -HHHHHHHHHHHHHTCHHHHHHHHHH-HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence             3577899999999999999999999 55678877754332222222222222  7899999999998665442      


Q ss_pred             -hhhhhhHHHh---hhhhh------hhhhhhhhhccchhHHHHHHHHHh
Q 008435          521 -VSNIIDIIYV---NCYEL------KKKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       521 -~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                       ..++.+++.+   ...+.      .+..+.++|.++|.+|...|+..+
T Consensus       486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  534 (597)
T 2xpi_A          486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA  534 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence             2233333333   33322      222357899999999988776443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.15  E-value=3.1e-11  Score=111.91  Aligned_cols=132  Identities=11%  Similarity=0.096  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      +.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++.     +| ++.      
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~~~------   74 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-DNS------   74 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-CHH------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-ChH------
Confidence            457899999999999999999999999999999999999999999999999999999999543     34 331      


Q ss_pred             HHHHHHHHH-HHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCc
Q 008435          450 VASQWSGVA-CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSI  515 (565)
Q Consensus       450 ~a~~~lG~a-~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~  515 (565)
                       .+..++.+ +...++..+|++.+++ +...+|+++.....+...+...|..-  +++++++++.+|+.
T Consensus        75 -~~~~~~~~~~~~~~~~~~a~~~~~~-al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A           75 -YKSLIAKLELHQQAAESPELKRLEQ-ELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             -HHHHHHHHHHHHHHTSCHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             -HHHHHHHHHHHhhcccchHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence             12223322 2333445568999999 66789998865432222222222211  78899999999875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.14  E-value=2.2e-10  Score=126.05  Aligned_cols=118  Identities=19%  Similarity=0.219  Sum_probs=83.1

Q ss_pred             CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008435          382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR  461 (565)
Q Consensus       382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~  461 (565)
                      .|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++     .+|++.       .++..+|.++..
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~-------~~~~~lg~~~~~   69 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA-----LHPGHP-------EAVARLGRVRWT   69 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-----TSTTCH-------HHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCH-------HHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999965     356543       467889999999


Q ss_pred             cCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435          462 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL  519 (565)
Q Consensus       462 ~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l  519 (565)
                      +|++++|+++|++ +...+|+++....       .+|..+         .++++++++++|+...++
T Consensus        70 ~g~~~~A~~~~~~-al~~~p~~~~~~~-------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  128 (568)
T 2vsy_A           70 QQRHAEAAVLLQQ-ASDAAPEHPGIAL-------WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT  128 (568)
T ss_dssp             TTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCHHHHHHHHHH-HHhcCCCCHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            9999999999999 6668898875433       444444         889999999999876544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.14  E-value=4e-10  Score=111.51  Aligned_cols=135  Identities=17%  Similarity=0.140  Sum_probs=105.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~--------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      .+..++.+|..+...|++++|+.+++++++.        +|..+.++..+|.++...|++++|+++|+++++...-...+
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4678899999999999999999999999994        78889999999999999999999999999998763000001


Q ss_pred             CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC-----CCCchhhhhhhhHHHHHHHHH---------HHHH
Q 008435          440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE-----PEEPKSKAHYYDGLVVLARYV---------ANIT  505 (565)
Q Consensus       440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~-----P~~~~~~~~~~~~~~~La~~l---------~~~l  505 (565)
                      +    .+....++..+|.++...|++++|+++++++.. ..     ++++.    ....+..+|..+         ++++
T Consensus       106 ~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~  176 (311)
T 3nf1_A          106 D----HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE-IREKVLGKDHPD----VAKQLNNLALLCQNQGKYEEVEYYY  176 (311)
T ss_dssp             T----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHHCTTCHH----HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             C----ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHhcCCCChH----HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            1    123345788899999999999999999999443 32     23332    223445666655         7888


Q ss_pred             HHHHhc
Q 008435          506 FLIFAT  511 (565)
Q Consensus       506 ~~Al~l  511 (565)
                      +++++.
T Consensus       177 ~~a~~~  182 (311)
T 3nf1_A          177 QRALEI  182 (311)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999887

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.14  E-value=2.7e-10  Score=121.32  Aligned_cols=108  Identities=9%  Similarity=0.103  Sum_probs=65.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ..+.+++.+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++.     +|.++ 
T Consensus       299 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-  372 (514)
T 2gw1_A          299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-----FPEAP-  372 (514)
T ss_dssp             TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-----STTCS-
T ss_pred             cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cccCH-
Confidence            334445556666666666666666666666666666666666666666666666666666666666543     23322 


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                            .++..+|.++...|++++|++.+++ +...+|+++
T Consensus       373 ------~~~~~la~~~~~~~~~~~A~~~~~~-a~~~~~~~~  406 (514)
T 2gw1_A          373 ------EVPNFFAEILTDKNDFDKALKQYDL-AIELENKLD  406 (514)
T ss_dssp             ------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHTSS
T ss_pred             ------HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhhhccc
Confidence                  2355566666666666666666666 444555544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.14  E-value=1.5e-10  Score=106.58  Aligned_cols=91  Identities=15%  Similarity=0.107  Sum_probs=72.7

Q ss_pred             HHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL----------EEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       380 ~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~----------~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      .+.+++++|++.++++++++|+++++|+.+|.++...+++          ++|+..|++||++     +|++.       
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~-------   80 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKD-------   80 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH-------
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcH-------
Confidence            3456678999999999999999999999999999999875          5999999999775     56654       


Q ss_pred             HHHHHHHHHHHHcC-----------CHHHHHHHHHHHhhccCCCC
Q 008435          450 VASQWSGVACIRQE-----------KWEEGIAHLERIGNLKEPEE  483 (565)
Q Consensus       450 ~a~~~lG~a~~~~g-----------~~~eAi~~leraa~~l~P~~  483 (565)
                      .+++++|.+|..+|           ++++|+++|++ +..++|++
T Consensus        81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~k-Al~l~P~~  124 (158)
T 1zu2_A           81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ-AVDEQPDN  124 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHCTTC
T ss_pred             HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHH-HHHhCCCC
Confidence            57889999998875           56666666666 44455554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.13  E-value=5.9e-11  Score=122.76  Aligned_cols=136  Identities=9%  Similarity=0.048  Sum_probs=88.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----------------NALILMGQTQLQKGLLEEAVEYLECAI  430 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a-----------------~A~~~LG~~~~~~g~~~eA~~~~~rAl  430 (565)
                      .+..+..+|..+...|++++|+.+|++|++.+|++.                 .+|+++|.++...|++++|+++|++|+
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            356688899999999999999999999999999988                 499999999999999999999999997


Q ss_pred             HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---HHHHHH
Q 008435          431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---ANITFL  507 (565)
Q Consensus       431 ~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---~~~l~~  507 (565)
                      ++     +|++.       .+++++|.+|..+|++++|++.|++ +..++|+++.....+...........   .+.|++
T Consensus       258 ~~-----~p~~~-------~a~~~lg~a~~~~g~~~~A~~~l~~-al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~  324 (338)
T 2if4_A          258 TE-----EEKNP-------KALFRRGKAKAELGQMDSARDDFRK-AQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG  324 (338)
T ss_dssp             HH-----CTTCH-------HHHHHHHHHHHTTTCHHHHHHHHHH-TTC--------------------------------
T ss_pred             Hh-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65     45543       5788999999999999999999999 77789988765332211100001111   567788


Q ss_pred             HHhcCCCcH
Q 008435          508 IFATSPSII  516 (565)
Q Consensus       508 Al~l~P~~~  516 (565)
                      ++..+|+..
T Consensus       325 ~l~~~p~~~  333 (338)
T 2if4_A          325 IFKGKDEGG  333 (338)
T ss_dssp             ---------
T ss_pred             hhCCCCCCC
Confidence            888888654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.13  E-value=3.3e-10  Score=122.10  Aligned_cols=109  Identities=11%  Similarity=0.085  Sum_probs=94.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAIS  431 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---------------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~  431 (565)
                      ..+..+..+|..+...|++++|+..|++|++++|++               ..+|+++|.+|...|++++|+++|++|++
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            346778999999999999999999999999999999               79999999999999999999999999976


Q ss_pred             hhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       432 l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                      +     +|+++       .+++++|.+|..+|++++|+..|++ +..++|+++....
T Consensus       346 ~-----~p~~~-------~a~~~~g~a~~~~g~~~~A~~~~~~-al~l~P~~~~a~~  389 (457)
T 1kt0_A          346 L-----DSANE-------KGLYRRGEAQLLMNEFESAKGDFEK-VLEVNPQNKAARL  389 (457)
T ss_dssp             H-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTC----CHHH
T ss_pred             c-----CCccH-------HHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHHHH
Confidence            5     45543       5788999999999999999999999 7779999886544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.12  E-value=3e-10  Score=104.58  Aligned_cols=114  Identities=13%  Similarity=0.097  Sum_probs=100.0

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhhhh
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT-QLQKGLL--EEAVEYLECAISKLFL  435 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~-~~~~g~~--~eA~~~~~rAl~l~~l  435 (565)
                      .+.+...+.++..++.+|..+...|++++|+.+|+++++.+|+++.+++.+|.+ +...|++  ++|+++|+++++.   
T Consensus        34 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~---  110 (177)
T 2e2e_A           34 QDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL---  110 (177)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---
Confidence            344445566789999999999999999999999999999999999999999999 8899999  9999999999765   


Q ss_pred             cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       436 ~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                        +|++.       .+++.+|.++...|++++|+.+|++ +...+|+++.
T Consensus       111 --~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~  150 (177)
T 2e2e_A          111 --DSNEI-------TALMLLASDAFMQANYAQAIELWQK-VMDLNSPRIN  150 (177)
T ss_dssp             --CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHTCCTTSC
T ss_pred             --CCCcH-------HHHHHHHHHHHHcccHHHHHHHHHH-HHhhCCCCcc
Confidence              45543       4678899999999999999999999 6668888764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.11  E-value=6.6e-11  Score=127.55  Aligned_cols=162  Identities=10%  Similarity=0.075  Sum_probs=117.4

Q ss_pred             HCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh--------hhhhHHHHHH
Q 008435          381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--------EAIDLLIVAS  452 (565)
Q Consensus       381 ~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~--------~~~~~~~~a~  452 (565)
                      ..+++++|+..++++++.+|+++.++..+|.++...|++++|+.+|++|+++.     |.+.        +..+....++
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~~~~  320 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-----EMEYGLSEKESKASESFLLAAF  320 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCCSCCHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----cccccCChHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999998764     4331        0111223578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHh
Q 008435          453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYV  530 (565)
Q Consensus       453 ~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~  530 (565)
                      +++|.||.++|++++|+.+|++ +..++|+++........++..++..-  +++|+++++++|++..++...........
T Consensus       321 ~nla~~~~~~g~~~~A~~~~~~-al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~  399 (457)
T 1kt0_A          321 LNLAMCYLKLREYTKAVECCDK-ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK  399 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHH-HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            8999999999999999999999 67789998755332222222222111  89999999999999888877776666666


Q ss_pred             hhhhhhhhhhhhhhccch
Q 008435          531 NCYELKKKRFASCFFGFS  548 (565)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~  548 (565)
                      .+.++.+++|.+++-.+.
T Consensus       400 ~~~~a~~~~~~~~f~k~~  417 (457)
T 1kt0_A          400 EHNERDRRIYANMFKKFA  417 (457)
T ss_dssp             HHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            666677777777765443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.11  E-value=3.7e-10  Score=99.53  Aligned_cols=102  Identities=12%  Similarity=0.026  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435          401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE  480 (565)
Q Consensus       401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~  480 (565)
                      +.+.++..+|.+++..|++++|+++|++|+++     +|+++       .++.++|.+|..+|++++|++.+++ +..++
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~-------~~~~nlg~~~~~~~~~~~A~~~~~~-al~~~   72 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNI-------TFYNNKAAVYFEEKKFAECVQFCEK-AVEVG   72 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHhHHHHHHHhhhHHHHHHHHHH-HHHhC
Confidence            45678899999999999999999999999875     46554       4688899999999999999999999 66677


Q ss_pred             CCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCc
Q 008435          481 PEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSI  515 (565)
Q Consensus       481 P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~  515 (565)
                      |+++........++..+|..+         +++|+++++.+|+.
T Consensus        73 ~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           73 RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence            776654444445666777766         78999999988864

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.09  E-value=4.9e-11  Score=129.43  Aligned_cols=133  Identities=14%  Similarity=0.074  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      +.++.+|..+...|++++|+++|++|++.+|+++.+|+.+|.++.+.|++++|+++|++|+++     +|+++       
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~-------   74 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYI-------   74 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCH-------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCH-------
Confidence            345567778889999999999999999999999999999999999999999999999999654     56544       


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhH--HHHHHHHH--HHHHH-----------HHHhcCCC
Q 008435          450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG--LVVLARYV--ANITF-----------LIFATSPS  514 (565)
Q Consensus       450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~--~~~La~~l--~~~l~-----------~Al~l~P~  514 (565)
                      .+++++|.+|..+|++++|++.|++ +..++|+++.....+..+  +...+...  ++.++           ++++++|+
T Consensus        75 ~~~~~lg~~~~~~g~~~eA~~~~~~-al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1           75 KGYYRRAASNMALGKFRAALRDYET-VVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence            4688899999999999999999999 666899888654433222  11111111  66677           77777776


Q ss_pred             c
Q 008435          515 I  515 (565)
Q Consensus       515 ~  515 (565)
                      +
T Consensus       154 ~  154 (477)
T 1wao_1          154 Y  154 (477)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.08  E-value=8.4e-10  Score=104.08  Aligned_cols=110  Identities=10%  Similarity=0.085  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh-----
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP-----  442 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~-----  442 (565)
                      ++..++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++.     .|.+.     
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~  110 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ-----LRGNQLIDYK  110 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TTTCSEEECG
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCccHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999764     34322     


Q ss_pred             -----hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          443 -----EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       443 -----~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                           ..+ ....+++++|.++...|++++|++.|++ +...+|++.
T Consensus       111 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~  155 (213)
T 1hh8_A          111 ILGLQFKL-FACEVLYNIAFMYAKKEEWKKAEEQLAL-ATSMKSEPR  155 (213)
T ss_dssp             GGTBCCEE-EHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCCSGG
T ss_pred             HhccccCc-cchHHHHHHHHHHHHccCHHHHHHHHHH-HHHcCcccc
Confidence                 011 1235788899999999999999999999 666888764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.08  E-value=8.3e-10  Score=111.72  Aligned_cols=164  Identities=13%  Similarity=-0.041  Sum_probs=117.2

Q ss_pred             CchHHHHHHHHhhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHhhhhcCCCCChhhhhHHHHH
Q 008435          386 ERPIPLLQLALNKEPDNINALILMGQTQLQ-------KGLL-------EEAVEYLECAISKLFLAGHPTEPEAIDLLIVA  451 (565)
Q Consensus       386 ~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~-------~g~~-------~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a  451 (565)
                      ++|+..|++|++.+|+++++|+.+|.++..       .|++       ++|.+.|++|++.    .+|++.       .+
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~----~~p~~~-------~~  101 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST----LLKKNM-------LL  101 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT----TTTTCH-------HH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH----hCcccH-------HH
Confidence            578899999999999999999999999874       5886       9999999999652    245443       46


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch-hhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhh------
Q 008435          452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK-SKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVS------  522 (565)
Q Consensus       452 ~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~-~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~------  522 (565)
                      |..+|.++...|++++|++.|++ +...+|.++. .+..+.......+..-  .+.|+++++.+|....++-..      
T Consensus       102 ~~~~~~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  180 (308)
T 2ond_A          102 YFAYADYEESRMKYEKVHSIYNR-LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-HHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHH-HHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            77899999999999999999999 6668888875 4333322222222222  789999999999765433211      


Q ss_pred             --h---hhhHHHhhhhhhhhhhhhhhhccchhHHHHHHHHHhhhh
Q 008435          523 --N---IIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRS  562 (565)
Q Consensus       523 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (565)
                        +   +...+++...+.. +..+++|.++|..+...|+..+.|.
T Consensus       181 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~  224 (308)
T 2ond_A          181 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV  224 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence              1   2223333333333 3478889999988887776655544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.07  E-value=8.7e-11  Score=98.75  Aligned_cols=101  Identities=7%  Similarity=0.021  Sum_probs=87.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++     .+|++. +...
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~-~~~~   76 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR-----YTSTAE-HVAI   76 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----SCSSTT-SHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCcc-HHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999964     456642 1222


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      ...+++.+|.++...|++++|++.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           77 RSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            345788899999999999998887766

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.07  E-value=2.6e-10  Score=110.82  Aligned_cols=137  Identities=17%  Similarity=0.058  Sum_probs=104.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~--------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      ..+..+..+|..+...|++++|+.+++++++.        +|..+.++..+|.++...|++++|+++|+++++...-...
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  120 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  120 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence            34677899999999999999999999999987        5778999999999999999999999999999876311111


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----cCCCCchhhhhhhhHHHHHHHHH---------HHHH
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL----KEPEEPKSKAHYYDGLVVLARYV---------ANIT  505 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~----l~P~~~~~~~~~~~~~~~La~~l---------~~~l  505 (565)
                      +++    +....++..+|.++...|++++|+++++++...    ..++++..    ...+..+|..+         .+++
T Consensus       121 ~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~  192 (283)
T 3edt_B          121 KFH----PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV----AKTKNNLASCYLKQGKYQDAETLY  192 (283)
T ss_dssp             TTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH----HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            221    233457888999999999999999999994432    12333321    23344556555         6788


Q ss_pred             HHHHhc
Q 008435          506 FLIFAT  511 (565)
Q Consensus       506 ~~Al~l  511 (565)
                      +++++.
T Consensus       193 ~~~l~~  198 (283)
T 3edt_B          193 KEILTR  198 (283)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888876

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.7e-09  Score=115.17  Aligned_cols=150  Identities=13%  Similarity=0.013  Sum_probs=86.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +.++..++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++|+++++..     |+++.. 
T Consensus       335 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~-  408 (514)
T 2gw1_A          335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE-----NKLDGI-  408 (514)
T ss_dssp             SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTSSSC-
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-----hccchH-
Confidence            33456666677777777777777777777777777777777777777777777777777777775542     221100 


Q ss_pred             hHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHH
Q 008435          446 DLLIVASQWSGVACIR---QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLT  520 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~---~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~  520 (565)
                      .....++..+|.++..   .|++++|++.+++ +...+|+++.........+...+..-  .++++++++++|+..+.+.
T Consensus       409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  487 (514)
T 2gw1_A          409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEK-ASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ  487 (514)
T ss_dssp             SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence            0001245667777777   7777777777777 44456665543221111111111111  5667777777777666554


Q ss_pred             hh
Q 008435          521 VS  522 (565)
Q Consensus       521 ~~  522 (565)
                      ..
T Consensus       488 ~~  489 (514)
T 2gw1_A          488 AI  489 (514)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.06  E-value=5.7e-10  Score=112.28  Aligned_cols=147  Identities=14%  Similarity=0.032  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHC-CCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          369 PKELIALSVKFLSK-GDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       369 ~~~l~~lA~~l~~~-g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      +..+..+|..+... |++++|+.+|++|++++|++      ..++..+|.++...|++++|+++|+++++.     +|++
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~  191 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-----SMGN  191 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TSSC
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----HhcC
Confidence            45678999999996 99999999999999999865      678999999999999999999999999764     3443


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-----------HHHHHHHHh
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-----------ANITFLIFA  510 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-----------~~~l~~Al~  510 (565)
                      .........++.++|.++..+|++++|+.+|++ +..++|.++.....  ..+..++..+           ++.|++++.
T Consensus       192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~~~~~~--~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE-GQSEDPNFADSRES--NFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG-GGCC---------H--HHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCCCcHHH--HHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            211111223577899999999999999999999 77788887653221  1122222222           455666666


Q ss_pred             cCCCcHHHHHhhh
Q 008435          511 TSPSIINLLTVSN  523 (565)
Q Consensus       511 l~P~~~~~l~~~~  523 (565)
                      ++|....++..+.
T Consensus       269 l~~~~~~~~~~~k  281 (292)
T 1qqe_A          269 LDKWKITILNKIK  281 (292)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            7776665555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.06  E-value=3.7e-10  Score=106.37  Aligned_cols=169  Identities=9%  Similarity=-0.010  Sum_probs=106.4

Q ss_pred             HHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh---------hhHH
Q 008435          378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA---------IDLL  448 (565)
Q Consensus       378 ~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~---------~~~~  448 (565)
                      .....|++++|...++...+..++.+..+..+|..+...|++++|+++|+++++.     .|.++..         ....
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~   87 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF-----FIHTEEWDDQILLDKKKNIE   87 (198)
T ss_dssp             ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TTTCTTCCCHHHHHHHHHHH
T ss_pred             hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HhcccccchhhHHHHHHHHH
Confidence            3455788888888888888888899999999999999999999999999999764     3433310         0111


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIID  526 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~  526 (565)
                      ..++.++|.++...|++++|+.++++ +...+|+++........++..++...  .++++++++++|+...++.......
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASK-VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            25788899999999999999999999 66688888754332222222222222  7899999999999998887776665


Q ss_pred             HHHhhhhhhhhhhhhhhhccchhHHHH
Q 008435          527 IIYVNCYELKKKRFASCFFGFSVLYVM  553 (565)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (565)
                      .......+..++ .-+.+++.|.+|-+
T Consensus       167 ~~~~~~~~~~~~-~~~~~f~~~~~~~~  192 (198)
T 2fbn_A          167 NKLKEARKKDKL-TFGGMFDKGPLYEE  192 (198)
T ss_dssp             HHHHHHHC-------------------
T ss_pred             HHHHHHHHHHHH-HHHHHhcccchhhc
Confidence            554444444444 44556888888754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.06  E-value=7.3e-10  Score=115.11  Aligned_cols=104  Identities=14%  Similarity=0.099  Sum_probs=88.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a----~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ....++.+|..+...|++++|+.+|+++++.+|++.    .+++.+|.++...|++++|+++|++++++. -.. .    
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~-~----  120 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-KSM-N----  120 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHT-T----
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHc-c----
Confidence            467788999999999999999999999999999997    689999999999999999999999998763 000 0    


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      +.+....++..+|.++...|++++|+++++++..
T Consensus       121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  154 (411)
T 4a1s_A          121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT  154 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            1233345788899999999999999999999443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.05  E-value=7.1e-10  Score=116.35  Aligned_cols=105  Identities=16%  Similarity=0.231  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALN----------------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~----------------~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +..+..+|..+...|++++|+..|++|++                .+|.++.+|+.+|.++...|++++|+++|++|++ 
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-  301 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-  301 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-
Confidence            35578899999999999999999999999                8999999999999999999999999999999964 


Q ss_pred             hhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                          .+|+++       .+++.+|.+|..+|++++|++.|++ +..++|+++..
T Consensus       302 ----~~p~~~-------~a~~~lg~~~~~~g~~~eA~~~l~~-Al~l~P~~~~~  343 (370)
T 1ihg_A          302 ----IDPSNT-------KALYRRAQGWQGLKEYDQALADLKK-AQEIAPEDKAI  343 (370)
T ss_dssp             ----TCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHH
T ss_pred             ----hCchhH-------HHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHH
Confidence                356544       5788899999999999999999999 66788888754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.04  E-value=1.1e-09  Score=112.49  Aligned_cols=107  Identities=14%  Similarity=0.039  Sum_probs=89.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ....++.+|..+...|++++|+.+|+++++.+|++    +.++..+|.++...|++++|+++|++++++.. ..  .   
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~--~---   81 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR-TI--G---   81 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HT--T---
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-hc--c---
Confidence            57788999999999999999999999999999999    57899999999999999999999999987630 00  0   


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      +.+....++..+|.++...|++++|++++++ +....|
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~  118 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQR-HLDISR  118 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHH
Confidence            1223345788899999999999999999999 443433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.03  E-value=1.7e-09  Score=107.16  Aligned_cols=103  Identities=15%  Similarity=0.060  Sum_probs=87.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      +...++..|..+...|++++|+.+++++++.+|++    +.++..+|.++...|++++|+++++++++...-.  +    
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~----   77 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G----   77 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T----
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c----
Confidence            45678899999999999999999999999999999    5789999999999999999999999998763000  0    


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      +.+....++..+|.++...|++++|+++++++.
T Consensus        78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  110 (338)
T 3ro2_A           78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL  110 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            122334578889999999999999999999943

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.03  E-value=3.9e-09  Score=103.90  Aligned_cols=160  Identities=9%  Similarity=0.028  Sum_probs=112.7

Q ss_pred             CHHHHHHHHHHHHH----CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          368 TPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       368 ~~~~l~~lA~~l~~----~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      ++..++.+|..+..    .+++++|+.+|+++++.+  ++.+++.+|.++..    .+++++|+++|++|++..      
T Consensus        37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------  108 (273)
T 1ouv_A           37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------  108 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------
T ss_pred             CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------
Confidence            46778889999988    899999999999998885  88999999999999    999999999999996531      


Q ss_pred             CChhhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-------------H
Q 008435          440 TEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-------------A  502 (565)
Q Consensus       440 ~~~~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-------------~  502 (565)
                       +       ..++..+|.+|..    .|++++|+++|++++. .+  ++..  ++     .+|..+             .
T Consensus       109 -~-------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~--~~~a--~~-----~lg~~~~~~~~~~~~~~~A~  170 (273)
T 1ouv_A          109 -Y-------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN--DGDG--CT-----ILGSLYDAGRGTPKDLKKAL  170 (273)
T ss_dssp             -C-------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT--CHHH--HH-----HHHHHHHHTSSSCCCHHHHH
T ss_pred             -C-------ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC--cHHH--HH-----HHHHHHHcCCCCCCCHHHHH
Confidence             1       2467788999988    8999999999999444 33  2222  12     333222             6


Q ss_pred             HHHHHHHhcCCCcH-----HHHHh----hhhhhHHHhhhhhhhhhhhhhhhccchhHHHH
Q 008435          503 NITFLIFATSPSII-----NLLTV----SNIIDIIYVNCYELKKKRFASCFFGFSVLYVM  553 (565)
Q Consensus       503 ~~l~~Al~l~P~~~-----~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (565)
                      ++++++++.++...     .+...    ..+.+.+.+.+..+.+...+++++++|.+|..
T Consensus       171 ~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~  230 (273)
T 1ouv_A          171 ASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN  230 (273)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence            78888888754211     12222    33344444444444455567888888888875

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.02  E-value=1.5e-09  Score=94.23  Aligned_cols=112  Identities=13%  Similarity=0.086  Sum_probs=86.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435          400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK  479 (565)
Q Consensus       400 P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l  479 (565)
                      |..++++..+|..+...|++++|+++|++++++     +|+++       .++.++|.++..+|++++|++.+++ +..+
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~-al~~   67 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDA-------RGYSNRAAALAKLMSFPEAIADCNK-AIEK   67 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCh-------HHHHHHHHHHHHhcCHHHHHHHHHH-HHHh
Confidence            556889999999999999999999999999765     45543       4688899999999999999999999 6778


Q ss_pred             CCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcC------CCcHHHHHhhhh
Q 008435          480 EPEEPKSKAHYYDGLVVLARYV--ANITFLIFATS------PSIINLLTVSNI  524 (565)
Q Consensus       480 ~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~------P~~~~~l~~~~~  524 (565)
                      +|+++.........+..++..-  .++++++++++      |+...++....+
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~  120 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK  120 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence            9998755332211211122111  78999999999      777777666544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.01  E-value=4.1e-09  Score=101.54  Aligned_cols=138  Identities=13%  Similarity=0.151  Sum_probs=107.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH---HHHHHHHHHHH------------------cCCHHHHHHHH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQ------------------KGLLEEAVEYL  426 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~---A~~~LG~~~~~------------------~g~~~eA~~~~  426 (565)
                      .++.++.+|..+...|++++|+..|+++++.+|++..   +++.+|.++..                  .|++++|+..|
T Consensus        40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  119 (225)
T 2yhc_A           40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF  119 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence            3578999999999999999999999999999999975   89999999986                  57899999999


Q ss_pred             HHHHHhhhhcCCCCChhhhhHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHH
Q 008435          427 ECAISKLFLAGHPTEPEAIDLL----------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV  496 (565)
Q Consensus       427 ~rAl~l~~l~~~P~~~~~~~~~----------~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~  496 (565)
                      +++++     ..|+++......          ......+|.++...|++++|+..|++ +....|+++..    .+++..
T Consensus       120 ~~~l~-----~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~l~~~p~~~~~----~~a~~~  189 (225)
T 2yhc_A          120 SKLVR-----GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG-MLRDYPDTQAT----RDALPL  189 (225)
T ss_dssp             HHHHT-----TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSTTSHHH----HHHHHH
T ss_pred             HHHHH-----HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-HHHHCcCCCcc----HHHHHH
Confidence            99964     457654222111          11235689999999999999999999 66688887632    233445


Q ss_pred             HHHHH---------HHHHHHHHhcCCCc
Q 008435          497 LARYV---------ANITFLIFATSPSI  515 (565)
Q Consensus       497 La~~l---------~~~l~~Al~l~P~~  515 (565)
                      +|.++         ++.++++....|+.
T Consensus       190 l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          190 MENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence            56555         67777777777764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.00  E-value=2.8e-09  Score=110.63  Aligned_cols=132  Identities=11%  Similarity=0.043  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          372 LIALSVKFLSKGDKERPIPLLQLALNK------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       372 l~~lA~~l~~~g~~~eAi~~l~~AL~~------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      ++.+|..+...|++++|+.++++|+++      ++..+.+++.+|.++...|++++|+++|++|+++.  ...++   ..
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~---~~  180 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY--KEHEA---YN  180 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTCST---TH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhCcc---ch
Confidence            445999999999999999999999997      33467999999999999999999999999998763  11111   12


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHh
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFA  510 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~  510 (565)
                      .....++.++|.++..+|++++|+++|++ +....+.... ......++.++|.++         +++++++++
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQK-AYSMAEAEKQ-PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHcCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            22334677788888888888888888888 4333332221 112233445666555         677777777

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.99  E-value=1e-09  Score=114.01  Aligned_cols=181  Identities=12%  Similarity=0.035  Sum_probs=123.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~-------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      .+..++.+|..+...|++++|+.++++|++..++       .+.++..+|.++...|++++|+++|++|+++.     +.
T Consensus       142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~  216 (383)
T 3ulq_A          142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-----EA  216 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----HH
Confidence            3677899999999999999999999999998443       46799999999999999999999999998763     11


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC--CC-chhhhhhhhHHHHHHHHH---------HHHHHHH
Q 008435          441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP--EE-PKSKAHYYDGLVVLARYV---------ANITFLI  508 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P--~~-~~~~~~~~~~~~~La~~l---------~~~l~~A  508 (565)
                      .. +......++.++|.+|..+|++++|+++++++.. ...  .+ +    ....++..+|..+         .++++++
T Consensus       217 ~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~-~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  290 (383)
T 3ulq_A          217 EK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA-VFEESNILP----SLPQAYFLITQIHYKLGKIDKAHEYHSKG  290 (383)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCGG----GHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHhhccch----hHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            11 1223345788999999999999999999999443 211  11 1    1233445666665         7888998


Q ss_pred             HhcCC-----CcHHHHH---h----hhh---hhHHHhhhhh-hhhhhhhhhhccchhHHHHHHHHHh
Q 008435          509 FATSP-----SIINLLT---V----SNI---IDIIYVNCYE-LKKKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       509 l~l~P-----~~~~~l~---~----~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                      +++.+     .....+.   .    .++   ...+++...+ .......+++.++|.+|...|+-.|
T Consensus       291 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~  357 (383)
T 3ulq_A          291 MAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQK  357 (383)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            88743     2221111   1    011   1111111111 1123456788899999988876544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.99  E-value=3.1e-09  Score=96.65  Aligned_cols=142  Identities=14%  Similarity=0.074  Sum_probs=96.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---hcCCCCChhh---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          402 NINALILMGQTQLQKGLLEEAVEYLECAISKLF---LAGHPTEPEA---IDLLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~---l~~~P~~~~~---~~~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      .+..+..+|..+...|++++|+++|++|++...   ...+|.+++.   .+....++.++|.++..+|++++|+..+++ 
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~-   88 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE-   88 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-
Confidence            467889999999999999999999999987630   1123333211   222335788999999999999999999999 


Q ss_pred             hhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH-HHHHhhhhhhHHHhhhhhhhhhhhhhhh
Q 008435          476 GNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII-NLLTVSNIIDIIYVNCYELKKKRFASCF  544 (565)
Q Consensus       476 a~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~  544 (565)
                      +..++|+++........++..++...  +++++++++++|+.. .+...............+..++.|.+.|
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  160 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF  160 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC------
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66789998865332222222222222  899999999999998 6666666665555555555555555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.99  E-value=1.4e-09  Score=100.56  Aligned_cols=112  Identities=14%  Similarity=-0.026  Sum_probs=91.3

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhhcC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQL-QKGLLEEAVEYLECAISKLFLAG  437 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~-~~g~~~eA~~~~~rAl~l~~l~~  437 (565)
                      .+.+...|.+++.++.+|..+...|++++|+..++++++.+| ++..+..+|.+.. ..++..+|+++|+++++.     
T Consensus        30 ~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----  103 (176)
T 2r5s_A           30 QTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA-----  103 (176)
T ss_dssp             HTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh-----
Confidence            344555566789999999999999999999999999999999 9888887776643 334455689999999765     


Q ss_pred             CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      +|+++       .+++.+|.++...|++++|++.|++ +...+|+..
T Consensus       104 ~P~~~-------~~~~~la~~~~~~g~~~~A~~~~~~-~l~~~p~~~  142 (176)
T 2r5s_A          104 NPDNF-------ELACELAVQYNQVGRDEEALELLWN-ILKVNLGAQ  142 (176)
T ss_dssp             STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCTTTT
T ss_pred             CCCCH-------HHHHHHHHHHHHcccHHHHHHHHHH-HHHhCcccC
Confidence            46544       4678899999999999999999999 666787754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.98  E-value=4e-09  Score=90.12  Aligned_cols=85  Identities=21%  Similarity=0.234  Sum_probs=74.5

Q ss_pred             CchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCH
Q 008435          386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW  465 (565)
Q Consensus       386 ~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~  465 (565)
                      ++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++.     +|.+.       .+++.+|.++...|++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~~~~~g~~   69 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYS-------VAWKWLGKTLQGQGDR   69 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHHcCCH
Confidence            68999999999999999999999999999999999999999999765     35433       4678899999999999


Q ss_pred             HHHHHHHHHHhhccCCCC
Q 008435          466 EEGIAHLERIGNLKEPEE  483 (565)
Q Consensus       466 ~eAi~~leraa~~l~P~~  483 (565)
                      ++|++.|++ +...+|++
T Consensus        70 ~~A~~~~~~-al~~~~~~   86 (115)
T 2kat_A           70 AGARQAWES-GLAAAQSR   86 (115)
T ss_dssp             HHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHH-HHHhcccc
Confidence            999999999 55455543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.98  E-value=6.4e-09  Score=101.15  Aligned_cols=170  Identities=12%  Similarity=0.049  Sum_probs=115.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      .++..+..+|..+...|++++|+.+++++++.+|+++.+++.+|.++...|++++|+++|+++++.     +|++.    
T Consensus        75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~----  145 (275)
T 1xnf_A           75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDP----  145 (275)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH----
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCh----
Confidence            357789999999999999999999999999999999999999999999999999999999999765     35433    


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCc--
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSI--  515 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~--  515 (565)
                         ....+++. +...|++++|+..+++ +....|.+...   +     .++..+         .+.++++++.+|+.  
T Consensus       146 ---~~~~~~~~-~~~~~~~~~A~~~~~~-~~~~~~~~~~~---~-----~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  212 (275)
T 1xnf_A          146 ---FRSLWLYL-AEQKLDEKQAKEVLKQ-HFEKSDKEQWG---W-----NIVEFYLGNISEQTLMERLKADATDNTSLAE  212 (275)
T ss_dssp             ---HHHHHHHH-HHHHHCHHHHHHHHHH-HHHHSCCCSTH---H-----HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred             ---HHHHHHHH-HHHhcCHHHHHHHHHH-HHhcCCcchHH---H-----HHHHHHHHhcCHHHHHHHHHHHhcccccccc
Confidence               12223333 3667999999999998 44456665432   1     112222         56677777766643  


Q ss_pred             --HHHH-------HhhhhhhHHHhhhhhhhhhhhhhhhccchhHHHHHHHHHh
Q 008435          516 --INLL-------TVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       516 --~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                        ...+       ...++.+++.+.+.... ...++-+...|.++..++...+
T Consensus       213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~l~~~~~  264 (275)
T 1xnf_A          213 HLSETNFYLGKYYLSLGDLDSATALFKLAV-ANNVHNFVEHRYALLELSLLGQ  264 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCCTTCHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHcCCHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHh
Confidence              1211       22222223322222222 2234455666777777776554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.96  E-value=1.3e-09  Score=109.70  Aligned_cols=112  Identities=10%  Similarity=0.051  Sum_probs=97.0

Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       360 ~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      +.+...|.+++.++.+|..+.+.|++++|+..++++++.+|++...+...+..+...++.++|++.|+++++.     +|
T Consensus       142 ~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~-----~P  216 (287)
T 3qou_A          142 DAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE-----NP  216 (287)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----CT
T ss_pred             HHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc-----CC
Confidence            3444455678999999999999999999999999999999988888888888899999999999999999765     46


Q ss_pred             CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      +++       .+++.+|.++...|++++|++.|++ +...+|++.
T Consensus       217 ~~~-------~~~~~la~~l~~~g~~~~A~~~l~~-~l~~~p~~~  253 (287)
T 3qou_A          217 EDA-------ALATQLALQLHQVGRNEEALELLFG-HLRXDLTAA  253 (287)
T ss_dssp             TCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTGG
T ss_pred             ccH-------HHHHHHHHHHHHcccHHHHHHHHHH-HHhcccccc
Confidence            554       4688899999999999999999999 667888873

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.96  E-value=5.6e-09  Score=89.06  Aligned_cols=102  Identities=24%  Similarity=0.360  Sum_probs=89.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      ++..++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++++++++.     +|.+.     
T Consensus        34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-----  103 (136)
T 2fo7_A           34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSA-----  103 (136)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred             chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCh-----
Confidence            46778889999999999999999999999999999999999999999999999999999999764     34332     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                        .++..+|.++...|++++|+.++++ +...+|+
T Consensus       104 --~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~  135 (136)
T 2fo7_A          104 --EAWYNLGNAYYKQGDYDEAIEYYQK-ALELDPR  135 (136)
T ss_dssp             --HHHHHHHHHHHTTTCHHHHHHHHHH-HHHHSTT
T ss_pred             --HHHHHHHHHHHHHccHHHHHHHHHH-HHccCCC
Confidence              3567799999999999999999999 5555554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.93  E-value=4.3e-09  Score=95.88  Aligned_cols=107  Identities=13%  Similarity=0.085  Sum_probs=83.9

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       398 ~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      .++.++.+++.+|.++...|++++|+++|++++++     +|+++       .+++++|.++..+|++++|+++|++ +.
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~-al   72 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APANP-------IYLSNRAAAYSASGQHEKAAEDAEL-AT   72 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCH-------HHHHHHHHHHHHccCHHHHHHHHHH-HH
Confidence            46778999999999999999999999999999765     35543       4688899999999999999999999 66


Q ss_pred             ccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHH
Q 008435          478 LKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIIN  517 (565)
Q Consensus       478 ~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~  517 (565)
                      .++|+++.....+...+..++...  +++++++++++|+...
T Consensus        73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            789998755332222222222111  8999999999998765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.91  E-value=1.1e-08  Score=89.14  Aligned_cols=101  Identities=17%  Similarity=0.083  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435          404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE  483 (565)
Q Consensus       404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~  483 (565)
                      ..++.+|..+.+.|++++|+..|+++++.     +|+++       .+++.+|.++...|++++|++.|++ +..++|++
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~-al~l~P~~   84 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQK-----EPERE-------EAWRSLGLTQAENEKDGLAIIALNH-ARMLDPKD   84 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTC
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCC
Confidence            34789999999999999999999999765     46544       4788899999999999999999999 77799999


Q ss_pred             chhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHH
Q 008435          484 PKSKAHYYDGLVVLARYV--ANITFLIFATSPSIIN  517 (565)
Q Consensus       484 ~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~  517 (565)
                      +.........+...+..-  +++++++++.+|++..
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           85 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            865443333333333333  7899999999998654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.91  E-value=2.3e-09  Score=98.91  Aligned_cols=115  Identities=12%  Similarity=-0.021  Sum_probs=87.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh-----hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE-----AIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~-----~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      .+..+...|..+...|++++|+++|++|+++.     |+++.     ..+....+|.++|.++..+|++++|++.+++ +
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-----p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k-A   83 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEIS-----HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK-A   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH-H
Confidence            46778999999999999999999999998764     54210     1112234799999999999999999999999 6


Q ss_pred             hcc-------CCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435          477 NLK-------EPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVSNII  525 (565)
Q Consensus       477 ~~l-------~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~~~~  525 (565)
                      ..+       +|+++..+   ..++++.|..+         +++|+++++++|+.....++.++.
T Consensus        84 L~l~n~~~e~~pd~~~A~---~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           84 LHYFNRRGELNQDEGKLW---ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             HHHHHHHCCTTSTHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             HHhhhccccCCCchHHHH---HHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            668       99887553   11223555554         899999999999887776666554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.90  E-value=7.1e-09  Score=99.33  Aligned_cols=122  Identities=14%  Similarity=0.079  Sum_probs=96.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG----LLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g----~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      -+++.++.+|..+...+++++|+.+|++|++.  +++.+++.||.+|.. +    ++++|+++|++|++.       .+ 
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-------g~-   84 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-------GS-   84 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-------TC-
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-------CC-
Confidence            47899999999999999999999999999875  799999999999998 6    899999999999642       11 


Q ss_pred             hhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-------------HHHH
Q 008435          443 EAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-------------ANIT  505 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-------------~~~l  505 (565)
                            ..+++++|.+|..    .+++++|+++|++++. ..|.+.     ...+...+|..+             .+++
T Consensus        85 ------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           85 ------KSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDA-----AVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             ------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHH-----HHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcc-----hHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence                  2467889999987    8999999999999444 444210     112333555444             6777


Q ss_pred             HHHHhc
Q 008435          506 FLIFAT  511 (565)
Q Consensus       506 ~~Al~l  511 (565)
                      +++++.
T Consensus       153 ~~A~~~  158 (212)
T 3rjv_A          153 KGSSSL  158 (212)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            777776

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.89  E-value=4.5e-09  Score=109.08  Aligned_cols=134  Identities=9%  Similarity=-0.047  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKE------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d------P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ..++..|..+...|++++|+.++++|+++.      +..+.+++.+|.++...|++++|++++++|++..  ...++   
T Consensus       102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~--~~~~~---  176 (378)
T 3q15_A          102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY--QNHPL---  176 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTSTT---
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH--HhCCC---
Confidence            346778999999999999999999999873      3468899999999999999999999999998763  11111   


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHh
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFA  510 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~  510 (565)
                      .......++.++|.++..+|++++|+++|+++.. ..+.... ......++.++|.++         +++++++++
T Consensus       177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~-~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE-LAMDIQN-DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHcCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            1122345788899999999999999999999443 3221111 112234555667665         566777776

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.88  E-value=8.4e-09  Score=104.45  Aligned_cols=138  Identities=14%  Similarity=0.063  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      +..+..+|..+...|++++|+.+|++|+++.++      .+.++..+|.+|.. |++++|+++|++|+++.     +...
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~-----~~~~  149 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF-----ENEE  149 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH-----HHTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH-----HhCC
Confidence            456778899999999999999999999998543      26789999999999 99999999999998764     1100


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCC
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSP  513 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P  513 (565)
                       .......++.++|.++..+|++++|+++|++ +..+.|++.... .....+..++.++         .+++++++ ++|
T Consensus       150 -~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p  225 (307)
T 2ifu_A          150 -RLRQAAELIGKASRLLVRQQKFDEAAASLQK-EKSMYKEMENYP-TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP  225 (307)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred             -ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHcCChh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence             1122235788899999999999999999999 554544433210 1111233333333         78999999 999


Q ss_pred             CcH
Q 008435          514 SII  516 (565)
Q Consensus       514 ~~~  516 (565)
                      ++.
T Consensus       226 ~~~  228 (307)
T 2ifu_A          226 GFS  228 (307)
T ss_dssp             TST
T ss_pred             CCC
Confidence            754

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.88  E-value=3.2e-09  Score=107.05  Aligned_cols=137  Identities=12%  Similarity=0.048  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI  449 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~  449 (565)
                      +..+..|..+...|++++|.+.|+.++..+|++. +++.+|.++.+.|+|++|+.+|+++++.      |    ++....
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~------~----d~~~~~  171 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW------P----DKFLAG  171 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC------S----CHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc------C----CcccHH
Confidence            4457789999999999999999999999999999 9999999999999999999999988431      1    111123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHH
Q 008435          450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLT  520 (565)
Q Consensus       450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~  520 (565)
                      .+++++|.++..+|++++|+.+|+++..  .|.+|..   +.++.+.+|.++         .+.|+++++.+|+ ..+..
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~--g~~~P~~---~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEAND--SPAGEAC---ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT--STTTTTT---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhc--CCCCccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence            4789999999999999999999999443  2322321   122333444444         7899999999999 77665


Q ss_pred             hhh
Q 008435          521 VSN  523 (565)
Q Consensus       521 ~~~  523 (565)
                      ...
T Consensus       246 aL~  248 (282)
T 4f3v_A          246 ALK  248 (282)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            553

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.88  E-value=7e-09  Score=91.48  Aligned_cols=103  Identities=13%  Similarity=0.013  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a------~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      +..+..+|..+...|++++|+.+++++++..++..      .++..+|.++...|++++|+++|+++++..  . +..  
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~-~~~--   83 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA--R-QLK--   83 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-HTT--
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H-HhC--
Confidence            45678999999999999999999999999876532      589999999999999999999999998763  0 001  


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                       +......++.++|.++...|++++|+++++++..
T Consensus        84 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  117 (164)
T 3ro3_A           84 -DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  117 (164)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             1222345688899999999999999999999443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.88  E-value=5.4e-09  Score=108.54  Aligned_cols=177  Identities=8%  Similarity=-0.022  Sum_probs=122.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~-------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      .++.++.+|..+...|++++|+.++++|++..++       .+.++..+|.++...|++++|+++|++|+++.  . ...
T Consensus       140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~--~-~~~  216 (378)
T 3q15_A          140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA--M-DIQ  216 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-HTT
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--H-HcC
Confidence            3677899999999999999999999999987543       36789999999999999999999999998763  0 001


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-----cCCCCchhhhhhhhHHHHHHHHH---------HHHHH
Q 008435          441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL-----KEPEEPKSKAHYYDGLVVLARYV---------ANITF  506 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~-----l~P~~~~~~~~~~~~~~~La~~l---------~~~l~  506 (565)
                         +......++.++|.++..+|++++|++++++ +..     .+|..       ..++..+|..+         .++++
T Consensus       217 ---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~-al~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~  285 (378)
T 3q15_A          217 ---NDRFIAISLLNIANSYDRSGDDQMAVEHFQK-AAKVSREKVPDLL-------PKVLFGLSWTLCKAGQTQKAFQFIE  285 (378)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHHCGGGH-------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHhhCChhH-------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence               1223345788999999999999999999999 443     22222       33445666665         78999


Q ss_pred             HHHhcCC-----CcHHHHHhh-------hhhhHHHhhhhhh-----hhhhhhhhhccchhHHHHHHHHHh
Q 008435          507 LIFATSP-----SIINLLTVS-------NIIDIIYVNCYEL-----KKKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       507 ~Al~l~P-----~~~~~l~~~-------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                      +++++.+     .+.......       .+. ..+..+.+.     ......+++..+|.+|...++..+
T Consensus       286 ~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~-~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~  354 (378)
T 3q15_A          286 EGLDHITARSHKFYKELFLFLQAVYKETVDE-RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQ  354 (378)
T ss_dssp             HHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHH
Confidence            9999844     332211111       110 111222111     123456678888888888776443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.86  E-value=4e-09  Score=109.52  Aligned_cols=184  Identities=14%  Similarity=0.005  Sum_probs=127.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNK------EPDNINALILMGQTQLQKGL-----------------LEEAVE  424 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~------dP~~a~A~~~LG~~~~~~g~-----------------~~eA~~  424 (565)
                      .+..+..+|..+...|++++|+.+++++++.      +|..+.++..+|.++...|+                 +++|++
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            3567889999999999999999999999998      77889999999999999999                 999999


Q ss_pred             HHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---
Q 008435          425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---  501 (565)
Q Consensus       425 ~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---  501 (565)
                      +|++++++..-..      +......++..+|.++...|++++|++++++ +....++.... ......+..+|..+   
T Consensus       205 ~~~~al~~~~~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~-~~~~~~~~~la~~~~~~  276 (411)
T 4a1s_A          205 FYQENLKLMRDLG------DRGAQGRACGNLGNTYYLLGDFQAAIEHHQE-RLRIAREFGDR-AAERRANSNLGNSHIFL  276 (411)
T ss_dssp             HHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHTCH-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHHHhcCCc-HHHHHHHHHHHHHHHHC
Confidence            9999987530000      1122335788899999999999999999999 44444432221 11223455666665   


Q ss_pred             ------HHHHHHHHhcCCCc------HH-------HHHhhhhhhHHH---hhhhhhhh-----hhhhhhhccchhHHHHH
Q 008435          502 ------ANITFLIFATSPSI------IN-------LLTVSNIIDIIY---VNCYELKK-----KRFASCFFGFSVLYVML  554 (565)
Q Consensus       502 ------~~~l~~Al~l~P~~------~~-------~l~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~  554 (565)
                            .++++++++..|+.      ..       +....++.+++.   +.+.+..+     ....++|.++|.+|..+
T Consensus       277 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  356 (411)
T 4a1s_A          277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI  356 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence                  78888888877642      11       122222222222   22222222     22355899999999887


Q ss_pred             HHHHh
Q 008435          555 VAMLK  559 (565)
Q Consensus       555 ~~~~~  559 (565)
                      |+-.+
T Consensus       357 g~~~~  361 (411)
T 4a1s_A          357 GGHER  361 (411)
T ss_dssp             TCHHH
T ss_pred             ccHHH
Confidence            76543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.86  E-value=1.3e-08  Score=88.67  Aligned_cols=98  Identities=13%  Similarity=0.107  Sum_probs=80.0

Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          397 NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       397 ~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      ..+|.++.+++.+|.++...|++++|+++|+++++.     +|+++       .++..+|.++..+|++++|+..+++ +
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~-a   69 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVA-------VYYTNRALCYLKMQQPEQALADCRR-A   69 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-H
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcH-------HHHHHHHHHHHHhcCHHHHHHHHHH-H
Confidence            467899999999999999999999999999999765     35433       4688899999999999999999999 6


Q ss_pred             hccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCC
Q 008435          477 NLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPS  514 (565)
Q Consensus       477 ~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~  514 (565)
                      ...+|+++....       .+|.++         .++++++++++|+
T Consensus        70 l~~~p~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           70 LELDGQSVKAHF-------FLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            668898875433       444443         7889999998887

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.85  E-value=1.5e-08  Score=81.76  Aligned_cols=84  Identities=27%  Similarity=0.398  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      ++..++.+|..+...|++++|+.+++++++.+|++..+++.+|.++...|++++|+++|++++++     +|.++     
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~-----   77 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-----   77 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCH-----
Confidence            46778999999999999999999999999999999999999999999999999999999999765     45543     


Q ss_pred             HHHHHHHHHHHHHHcC
Q 008435          448 LIVASQWSGVACIRQE  463 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g  463 (565)
                        .++..+|.++..+|
T Consensus        78 --~~~~~l~~~~~~~g   91 (91)
T 1na3_A           78 --EAKQNLGNAKQKQG   91 (91)
T ss_dssp             --HHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHhcC
Confidence              35677888887654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.83  E-value=1.5e-08  Score=90.77  Aligned_cols=100  Identities=13%  Similarity=0.091  Sum_probs=84.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +.++..++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++.     +|.+..  
T Consensus        44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~--  116 (166)
T 1a17_A           44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD--  116 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH--
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHH--
Confidence            3457889999999999999999999999999999999999999999999999999999999999765     354431  


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                         .......+..+...|++++|++.+++.
T Consensus       117 ---~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A          117 ---AKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHcccch
Confidence               112234555588899999999999983

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=3.8e-08  Score=86.32  Aligned_cols=120  Identities=13%  Similarity=0.042  Sum_probs=90.5

Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       396 L~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      ...+|+++..++.+|..+...|++++|+++|+++++.     +|++.    ....++.++|.++...|++++|++.+++ 
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~-   90 (148)
T 2dba_A           21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQ----DQAVLHRNRAACHLKLEDYDKAETEASK-   90 (148)
T ss_dssp             CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred             CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccch----HHHHHHHHHHHHHHHHccHHHHHHHHHH-
Confidence            4567999999999999999999999999999999643     45321    1235688899999999999999999999 


Q ss_pred             hhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435          476 GNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNII  525 (565)
Q Consensus       476 a~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~  525 (565)
                      +...+|+++.........+..++...  .++++++++++|+...++....+.
T Consensus        91 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A           91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            66688888654332222222222211  789999999999998877665543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.82  E-value=1.8e-08  Score=99.45  Aligned_cols=138  Identities=17%  Similarity=0.086  Sum_probs=103.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~--------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      .+..+..+|..+...|++++|+.+++++++.        +|....++..+|.++...|++++|+++|+++++...-...+
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  147 (311)
T 3nf1_A           68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  147 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence            3567889999999999999999999999987        57789999999999999999999999999998753000001


Q ss_pred             CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc----CCCCchhhhhhhhHHHHHHHHH---------HHHHH
Q 008435          440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK----EPEEPKSKAHYYDGLVVLARYV---------ANITF  506 (565)
Q Consensus       440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l----~P~~~~~~~~~~~~~~~La~~l---------~~~l~  506 (565)
                      +    .+....++..+|.++...|++++|+++++++....    .++++.    ....+..+|..+         .++++
T Consensus       148 ~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~  219 (311)
T 3nf1_A          148 D----HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN----VAKTKNNLASCYLKQGKFKQAETLYK  219 (311)
T ss_dssp             T----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH----HHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             C----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            1    12334568889999999999999999999944321    122332    123344555554         77888


Q ss_pred             HHHhcCC
Q 008435          507 LIFATSP  513 (565)
Q Consensus       507 ~Al~l~P  513 (565)
                      ++++..|
T Consensus       220 ~al~~~~  226 (311)
T 3nf1_A          220 EILTRAH  226 (311)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.82  E-value=1.4e-08  Score=94.42  Aligned_cols=104  Identities=11%  Similarity=-0.002  Sum_probs=87.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHh------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALN------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~------~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      .+..+..+|..+...|++++|+.+++++++      .+|..+.++..+|.++...|++++|+++|+++++..  ...+++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~  102 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELL--ASLPED  102 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSCCC
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCcc
Confidence            477889999999999999999999999999      667788999999999999999999999999998763  111211


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                         ......++.++|.++...|++++|+++++++.
T Consensus       103 ---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A          103 ---PLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence               11234568889999999999999999999944

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.82  E-value=8e-09  Score=106.13  Aligned_cols=183  Identities=14%  Similarity=0.043  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC--------------------HHHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGL--------------------LEEA  422 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~--------------------~~eA  422 (565)
                      +..+..+|..+...|++++|+.+++++++..|+.      +.++..+|.++...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            5678899999999999999999999999988764      6699999999999999                    9999


Q ss_pred             HHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-
Q 008435          423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-  501 (565)
Q Consensus       423 ~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-  501 (565)
                      +++|++++++. -. ..    +......++..+|.++...|++++|++++++ +....+..+... .....+..+|..+ 
T Consensus       167 ~~~~~~al~~~-~~-~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~-~~~~~~~~la~~~~  238 (406)
T 3sf4_A          167 VDFYEENLSLV-TA-LG----DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ-RLLIAKEFGDKA-AERRAYSNLGNAYI  238 (406)
T ss_dssp             HHHHHHHHHHH-HH-TT----CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH-HHHHHHHTTCHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-Hh-cc----CcHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHhcCCcH-HHHHHHHHHHHHHH
Confidence            99999998763 11 01    1223345678899999999999999999999 443444333211 1223445566555 


Q ss_pred             --------HHHHHHHHhcCCCc------HH-------HHHhhhhhhHHH---hhhhhhhh-----hhhhhhhccchhHHH
Q 008435          502 --------ANITFLIFATSPSI------IN-------LLTVSNIIDIIY---VNCYELKK-----KRFASCFFGFSVLYV  552 (565)
Q Consensus       502 --------~~~l~~Al~l~P~~------~~-------~l~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~  552 (565)
                              .+++++++++.|+.      ..       +....++.+++.   +.+.+..+     .....+|.++|.+|.
T Consensus       239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~  318 (406)
T 3sf4_A          239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT  318 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence                    78888888776643      11       112222222222   22222222     122668889999998


Q ss_pred             HHHHHHh
Q 008435          553 MLVAMLK  559 (565)
Q Consensus       553 ~~~~~~~  559 (565)
                      ..|+-.+
T Consensus       319 ~~g~~~~  325 (406)
T 3sf4_A          319 ALGNHDQ  325 (406)
T ss_dssp             HHTCHHH
T ss_pred             HcCCHHH
Confidence            8876443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.81  E-value=3.1e-08  Score=101.29  Aligned_cols=179  Identities=7%  Similarity=-0.081  Sum_probs=114.5

Q ss_pred             CHHHHHHHHHHHHHCC--CCCchHHHHHHHHhhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhhhhcCC
Q 008435          368 TPKELIALSVKFLSKG--DKERPIPLLQLALNKEPDNINALILMGQTQ----LQK---GLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g--~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~----~~~---g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      +......++..+...|  ++++++.+++++|..+|++..+|+..+.++    ...   +++++++++++++++.     +
T Consensus        66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~-----~  140 (306)
T 3dra_A           66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS-----D  140 (306)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH-----C
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh-----C
Confidence            3444555666666666  666777777777777777777777777776    555   5666777777777543     3


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH-----HH---HHHHHHH
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWE--EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR-----YV---ANITFLI  508 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~--eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~-----~l---~~~l~~A  508 (565)
                      |++.       .++.+.+.+....|+++  ++++.+++ +...+|.|-.++.+....+..++.     .+   .++++++
T Consensus       141 pkny-------~aW~~R~~vl~~l~~~~~~~EL~~~~~-~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~a  212 (306)
T 3dra_A          141 PKNH-------HVWSYRKWLVDTFDLHNDAKELSFVDK-VIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDK  212 (306)
T ss_dssp             TTCH-------HHHHHHHHHHHHTTCTTCHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHH
T ss_pred             CCCH-------HHHHHHHHHHHHhcccChHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence            5443       47888999999999998  99999999 666888888665433222222332     12   7899999


Q ss_pred             HhcCCCcHHHHHh-------hhhhhHHH----hhhhhhh--hhhhhhhhccchhHHHHHHHHHh
Q 008435          509 FATSPSIINLLTV-------SNIIDIIY----VNCYELK--KKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       509 l~l~P~~~~~l~~-------~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                      +..+|++..+|..       .++..+.+    +.+.+..  .++-..|+..++.+|.+.++.-|
T Consensus       213 I~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~  276 (306)
T 3dra_A          213 IVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE  276 (306)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence            9999998776632       22222211    2222221  24566777788888876654433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.81  E-value=1.3e-08  Score=85.51  Aligned_cols=68  Identities=16%  Similarity=0.282  Sum_probs=63.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      .+.++..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.+|...|++++|+++|++++++
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            35578999999999999999999999999999999999999999999999999999999999999875

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.80  E-value=5.2e-09  Score=86.65  Aligned_cols=92  Identities=20%  Similarity=0.277  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNIN-ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~-A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      .+.+|..+...|++++|+..++++++.+|+++. +++.+|.++...|++++|+++|++++++     +|++.       .
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~   70 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSP-------A   70 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTST-------H
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcH-------H
Confidence            467899999999999999999999999999999 9999999999999999999999999765     46544       1


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      ++.+        +.+++|+..|++ +...+|+++
T Consensus        71 ~~~~--------~~~~~a~~~~~~-~~~~~p~~~   95 (99)
T 2kc7_A           71 LQAR--------KMVMDILNFYNK-DMYNQLEHH   95 (99)
T ss_dssp             HHHH--------HHHHHHHHHHCC-TTHHHHCCS
T ss_pred             HHHH--------HHHHHHHHHHHH-HhccCcccc
Confidence            1211        678888999988 555666655

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.78  E-value=3.5e-08  Score=98.80  Aligned_cols=102  Identities=15%  Similarity=0.145  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      .++..|..+...|++++|+.++++|++..++.      +.+++.+|.+|...|++++|+++|++|++..  ...|++.  
T Consensus       117 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~--~~~~~~~--  192 (293)
T 2qfc_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL--EALHDNE--  192 (293)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSCCCH--
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhcCccc--
Confidence            35668888889999999999999999876655      7799999999999999999999999998652  1223221  


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                       .....+++++|.+|..+|++++|+++++++..
T Consensus       193 -~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~  224 (293)
T 2qfc_A          193 -EFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence             11225788999999999999999999999443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.78  E-value=2.9e-08  Score=85.20  Aligned_cols=101  Identities=16%  Similarity=0.099  Sum_probs=77.9

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       398 ~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      ..|.++.+++.+|.++...|++++|+++|+++++.     +|++.       .++..+|.++...|++++|++.+++ +.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~-a~   77 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDA-------KLYSNRAACYTKLLEFQLALKDCEE-CI   77 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCH-------HHHHHHHHHHTTTTCHHHHHHHHHH-HH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcH-------HHHHHHHHHHHHhccHHHHHHHHHH-HH
Confidence            45788999999999999999999999999999643     45443       4678899999999999999999999 66


Q ss_pred             ccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHH
Q 008435          478 LKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINL  518 (565)
Q Consensus       478 ~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~  518 (565)
                      ..+|.++....       .+|..+         .++++++++.+|+...+
T Consensus        78 ~~~~~~~~~~~-------~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  120 (133)
T 2lni_A           78 QLEPTFIKGYT-------RKAAALEAMKDYTKAMDVYQKALDLDSSCKEA  120 (133)
T ss_dssp             HHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHH
T ss_pred             HhCCCchHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHH
Confidence            67888765422       344333         56666666666655443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.78  E-value=6.5e-08  Score=93.68  Aligned_cols=124  Identities=15%  Similarity=0.074  Sum_probs=91.9

Q ss_pred             HHCCCCCchHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHH
Q 008435          380 LSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA  451 (565)
Q Consensus       380 ~~~g~~~eAi~~l~~AL~~--------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a  451 (565)
                      ...|+.++|+.++++|++.        +|..+.++..+|.++...|++++|+++|+++++...-...++    .+....+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~   87 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD----HPAVAAT   87 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT----CHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc----chHHHHH
Confidence            4578999999999999983        477899999999999999999999999999987631111111    2233457


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcc----CCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhc
Q 008435          452 SQWSGVACIRQEKWEEGIAHLERIGNLK----EPEEPKSKAHYYDGLVVLARYV---------ANITFLIFAT  511 (565)
Q Consensus       452 ~~~lG~a~~~~g~~~eAi~~leraa~~l----~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l  511 (565)
                      +..+|.++...|++++|+++|+++....    .++++..    ...+..+|..+         .++++++++.
T Consensus        88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV----AKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8889999999999999999999944321    2333422    23445666665         7788888887

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.76  E-value=7.7e-08  Score=100.76  Aligned_cols=140  Identities=11%  Similarity=0.047  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc---CCCCC-hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLA---GHPTE-PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL  478 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~---~~P~~-~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~  478 (565)
                      +..+..+|..+...|++++|+++|++|++...-.   .+..+ .+..+....++.++|.++..+|++++|++++++ +..
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~-al~  301 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE-ALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH-HHH
Confidence            4568999999999999999999999998742000   00000 001123345788999999999999999999999 667


Q ss_pred             cCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhhhhhhhhh
Q 008435          479 KEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASC  543 (565)
Q Consensus       479 l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  543 (565)
                      ++|+++.....+..++..++...  +++++++++++|+...++............+.+..++.|.+.
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~km  368 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKM  368 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888755332222222222111  889999999999999888877776666565555555555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.75  E-value=1.7e-08  Score=84.74  Aligned_cols=74  Identities=16%  Similarity=0.184  Sum_probs=61.2

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       398 ~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      .+|+++.+++.+|.++...|++++|+++|++++++     +|+++       .+++.+|.++...|++++|++.|++ +.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~-al   68 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVET-----DPDYV-------GTYYHLGKLYERLDRTDDAIDTYAQ-GI   68 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCT-------HHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HH
Confidence            58999999999999999999999999999999765     46544       4688899999999999999999999 55


Q ss_pred             ccCCCCc
Q 008435          478 LKEPEEP  484 (565)
Q Consensus       478 ~l~P~~~  484 (565)
                      .+.|.++
T Consensus        69 ~l~~~~~   75 (100)
T 3ma5_A           69 EVAREEG   75 (100)
T ss_dssp             HHHHHHS
T ss_pred             hhhhcCC
Confidence            4554433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.75  E-value=9.8e-08  Score=79.72  Aligned_cols=110  Identities=15%  Similarity=0.104  Sum_probs=83.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      .+.+++.+|..+...|++++|+++|+++++.     +|.++       .++..+|.++...|++++|++.+++ +...+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~   69 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNH-------VLYSNRSAAYAKKGDYQKAYEDGCK-TVDLKP   69 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCT
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHhhccHHHHHHHHHH-HHHhCc
Confidence            4688999999999999999999999999764     35433       4677899999999999999999999 666788


Q ss_pred             CCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhh
Q 008435          482 EEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNI  524 (565)
Q Consensus       482 ~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~  524 (565)
                      .++.....+...+...+..-  .++++++++.+|+...++....+
T Consensus        70 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  114 (118)
T 1elw_A           70 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN  114 (118)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            87754332211211111111  78899999999998877665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.74  E-value=1e-07  Score=105.65  Aligned_cols=168  Identities=11%  Similarity=-0.037  Sum_probs=123.9

Q ss_pred             HHHHHHHCCCCC-chHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          375 LSVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKGL----------LEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       375 lA~~l~~~g~~~-eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~----------~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ......+.|+++ +|++.++++++.+|++..+|+..|.++...|+          +++|++.++++++.     +|++. 
T Consensus        34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-----~pK~y-  107 (567)
T 1dce_A           34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSY-  107 (567)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-----CCCCH-
Confidence            334455667666 57999999999999999999999999999998          99999999999764     57655 


Q ss_pred             hhhHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---HHHHHHHHhcCCCcHHH
Q 008435          444 AIDLLIVASQWSGVACIRQE--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---ANITFLIFATSPSIINL  518 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g--~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---~~~l~~Al~l~P~~~~~  518 (565)
                            .+|++.+.++.+.|  ++++|++.+++ +...+|++..++.+....+..++..+   .++++++++.+|++..+
T Consensus       108 ------~aW~hR~w~l~~l~~~~~~~el~~~~k-~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa  180 (567)
T 1dce_A          108 ------GTWHHRCWLLSRLPEPNWARELELCAR-FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  180 (567)
T ss_dssp             ------HHHHHHHHHHHTCSSCCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred             ------HHHHHHHHHHHHcccccHHHHHHHHHH-HHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence                  57888999999999  77999999999 66689998866443222222222111   78999999999997766


Q ss_pred             HHhh---------------------hhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHH
Q 008435          519 LTVS---------------------NIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLV  555 (565)
Q Consensus       519 l~~~---------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  555 (565)
                      |...                     +..++.++.+.++.  ++..+++|+.+|-++...+
T Consensus       181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~  240 (567)
T 1dce_A          181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE  240 (567)
T ss_dssp             HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence            5332                     22233333333322  3568999999998876543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.74  E-value=1.1e-07  Score=105.40  Aligned_cols=147  Identities=8%  Similarity=-0.078  Sum_probs=118.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCC----------CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 008435          362 ISVENLTPKELIALSVKFLSKGD----------KERPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECA  429 (565)
Q Consensus       362 ~~~~~~~~~~l~~lA~~l~~~g~----------~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g--~~~eA~~~~~rA  429 (565)
                      +...+.+...+..++..+...|+          +++|++.++++++.+|++..+|+..|.++.+.|  ++++|+++++++
T Consensus        56 l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~  135 (567)
T 1dce_A           56 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF  135 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             HHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence            33344457777788888877777          899999999999999999999999999999999  779999999999


Q ss_pred             HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH-----------
Q 008435          430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL-----------  497 (565)
Q Consensus       430 l~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g-~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L-----------  497 (565)
                      +++     +|++.       .||.+.|.+....| .++++++++++ +...+|.|..++.+....+..+           
T Consensus       136 l~~-----d~~N~-------~aW~~R~~~l~~l~~~~~~el~~~~~-~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~  202 (567)
T 1dce_A          136 LEA-----DERNF-------HCWDYRRFVAAQAAVAPAEELAFTDS-LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (567)
T ss_dssp             HHH-----CTTCH-------HHHHHHHHHHHHTCCCHHHHHHHHHT-TTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             Hhh-----ccccc-------cHHHHHHHHHHHcCCChHHHHHHHHH-HHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence            765     45543       57888999999999 99999999999 7779999987654433333332           


Q ss_pred             --HHHH---HHHHHHHHhcCCCcHHHHHh
Q 008435          498 --ARYV---ANITFLIFATSPSIINLLTV  521 (565)
Q Consensus       498 --a~~l---~~~l~~Al~l~P~~~~~l~~  521 (565)
                        ...+   .+++++|+..+|++..+|..
T Consensus       203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y  231 (567)
T 1dce_A          203 LPENVLLKELELVQNAFFTDPNDQSAWFY  231 (567)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence              0122   78999999999998877654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.74  E-value=1.6e-07  Score=95.91  Aligned_cols=171  Identities=9%  Similarity=-0.050  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHCCCCC-chHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          372 LIALSVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       372 l~~lA~~l~~~g~~~-eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g--~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      .........+.|.+. +|+.+++++|.++|++..+|+..|.++...|  +++++++++++++..     +|++.      
T Consensus        35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-----nPk~y------  103 (306)
T 3dra_A           35 IMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-----NEKNY------  103 (306)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-----CTTCC------
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-----CcccH------
Confidence            344455556677665 7999999999999999999999999999999  999999999999764     57665      


Q ss_pred             HHHHHHHHHHH----HHc---CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH----HHHHHHHHHHhcCCCcHH
Q 008435          449 IVASQWSGVAC----IRQ---EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR----YVANITFLIFATSPSIIN  517 (565)
Q Consensus       449 ~~a~~~lG~a~----~~~---g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~----~l~~~l~~Al~l~P~~~~  517 (565)
                       .++...+.++    ...   ++++++++.+++ +...+|++..++.+....+..++.    ...++++++++.||.+-.
T Consensus       104 -~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~-~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s  181 (306)
T 3dra_A          104 -QIWNYRQLIIGQIMELNNNDFDPYREFDILEA-MLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS  181 (306)
T ss_dssp             -HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred             -HHHHHHHHHHHHHHHhccccCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence             4677778877    666   899999999999 666899998664433222222221    117889999999998776


Q ss_pred             HHH-------hhhh------hhHHHhhhhhh--hhhhhhhhhccchhHHHHHH
Q 008435          518 LLT-------VSNI------IDIIYVNCYEL--KKKRFASCFFGFSVLYVMLV  555 (565)
Q Consensus       518 ~l~-------~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  555 (565)
                      +|.       ..++      .++.++.+.++  ...+..+||..+|-++..++
T Consensus       182 AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~  234 (306)
T 3dra_A          182 AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD  234 (306)
T ss_dssp             HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence            663       2222      23333333332  34668899999999887765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.74  E-value=1.3e-07  Score=79.60  Aligned_cols=104  Identities=19%  Similarity=0.234  Sum_probs=77.0

Q ss_pred             hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          398 KEPDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       398 ~dP~~-a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      .+|.+ +.+++.+|.++...|++++|+++|+++++.     +|.+.       .++..+|.++...|++++|+..+++ +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~-~   69 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQK-A   69 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-H
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcH-------HHHHHHHHHHHHhCCHHHHHHHHHH-H
Confidence            46766 899999999999999999999999999764     34332       3577899999999999999999999 5


Q ss_pred             hccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHh
Q 008435          477 NLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTV  521 (565)
Q Consensus       477 ~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~  521 (565)
                      ...+|.++....       .++..+         .++++++++.+|+...++..
T Consensus        70 ~~~~~~~~~~~~-------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  116 (125)
T 1na0_A           70 LELDPNNAEAWY-------NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN  116 (125)
T ss_dssp             HHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHhCCccHHHHH-------HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            567887764322       344333         66777777777776655443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.74  E-value=1.4e-08  Score=84.39  Aligned_cols=104  Identities=19%  Similarity=0.109  Sum_probs=77.4

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       398 ~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      ++|+++.+++.+|.++...|++++|+++|+++++.     +|.+.       .++..+|.++...|++++|++.+++ +.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~-a~   67 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEES-------KYWLMKGKALYNLERYEEAVDCYNY-VI   67 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCCH-------HHHHHHHHHHHHccCHHHHHHHHHH-HH
Confidence            47999999999999999999999999999999765     35433       3577899999999999999999999 66


Q ss_pred             ccCCC--CchhhhhhhhHHHHH-HHHH--HHHHHHHHhcCCC
Q 008435          478 LKEPE--EPKSKAHYYDGLVVL-ARYV--ANITFLIFATSPS  514 (565)
Q Consensus       478 ~l~P~--~~~~~~~~~~~~~~L-a~~l--~~~l~~Al~l~P~  514 (565)
                      ..+|+  ++.........+..+ +...  .+++++++..+|+
T Consensus        68 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           68 NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            67888  664432221121122 2111  5667777776665

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.73  E-value=2.1e-08  Score=99.28  Aligned_cols=138  Identities=11%  Similarity=-0.066  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNK------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      ...+..+|..+...|++++|+.+++++++.      +|..+.++..+|.++...|++++|+++|+++++..     +...
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~  117 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS-----RELN  117 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-----HHhc
Confidence            456789999999999999999999999988      66778999999999999999999999999998764     1100


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-
Q 008435          443 EAIDLLIVASQWSGVACIRQEK--------------------WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-  501 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~--------------------~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-  501 (565)
                       +......++..+|.++...|+                    +++|+++++++.. ..+.... .......+..+|..+ 
T Consensus       118 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~-~~~~~~~-~~~~~~~~~~l~~~~~  194 (338)
T 3ro2_A          118 -DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS-LVTALGD-RAAQGRAFGNLGNTHY  194 (338)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH-HHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred             -CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHhcCC-HHHHHHHHHHHHHHHH
Confidence             112234478889999999999                    9999999998433 2111000 011222344555544 


Q ss_pred             --------HHHHHHHHhcCCC
Q 008435          502 --------ANITFLIFATSPS  514 (565)
Q Consensus       502 --------~~~l~~Al~l~P~  514 (565)
                              .++++++++..+.
T Consensus       195 ~~~~~~~A~~~~~~a~~~~~~  215 (338)
T 3ro2_A          195 LLGNFRDAVIAHEQRLLIAKE  215 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHh
Confidence                    6778888876543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.73  E-value=6.1e-08  Score=82.43  Aligned_cols=105  Identities=15%  Similarity=0.145  Sum_probs=81.0

Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       396 L~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      .+.+|+++.+++.+|.++...|++++|+++|+++++.     +|+++       .++..+|.++...|++++|++.+++ 
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~-   71 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANA-------VYFCNRAAAYSKLGNYAGAVQDCER-   71 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred             hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHHHHHhhchHHHHHHHHH-
Confidence            4567888999999999999999999999999999764     34432       4677899999999999999999999 


Q ss_pred             hhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHH
Q 008435          476 GNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLT  520 (565)
Q Consensus       476 a~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~  520 (565)
                      +...+|+++....       .+|..+         .++++++++.+|+...++.
T Consensus        72 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  118 (131)
T 2vyi_A           72 AICIDPAYSKAYG-------RMGLALSSLNKHVEAVAYYKKALELDPDNETYKS  118 (131)
T ss_dssp             HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHhcCccCHHHHH-------HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHH
Confidence            6667888764422       444333         6777888887777655443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.73  E-value=3.2e-08  Score=99.09  Aligned_cols=102  Identities=15%  Similarity=0.145  Sum_probs=81.3

Q ss_pred             HHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          373 IALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      ..+|..+...|++++|+.++++|++..++.      ..++..+|.+|...|++++|+++|++|++..  ...+.   +..
T Consensus       119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~--~~~~~---~~~  193 (293)
T 3u3w_A          119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL--EALHD---NEE  193 (293)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSSC---CHH
T ss_pred             HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hhccc---chh
Confidence            357888888889999999999999965443      4589999999999999999999999998753  11111   222


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE  480 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~  480 (565)
                      ....+++++|.+|..+|++++|++++++ +....
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~-al~~~  226 (293)
T 3u3w_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNK-AIEIS  226 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHH
Confidence            3345789999999999999999999999 44343

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.72  E-value=9.3e-09  Score=111.41  Aligned_cols=113  Identities=15%  Similarity=0.098  Sum_probs=91.0

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+.+...+.++..+..+|..+.+.|++++|+..+++|++++|+++.+++.+|.+|...|++++|+++|++|+++     +
T Consensus        30 ~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~  104 (477)
T 1wao_1           30 SQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----K  104 (477)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----S
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Confidence            34445566679999999999999999999999999999999999999999999999999999999999999765     4


Q ss_pred             CCChhhhhHHHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHhhccCCCCc
Q 008435          439 PTEPEAIDLLIVASQWSGVA--CIRQEKWEEGIAHLE-----------RIGNLKEPEEP  484 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a--~~~~g~~~eAi~~le-----------raa~~l~P~~~  484 (565)
                      |++.       .++.+++.+  +..+|++++|++.++           + +...+|++.
T Consensus       105 p~~~-------~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-al~~~~~~~  155 (477)
T 1wao_1          105 PHDK-------DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIE-SMTIEDEYS  155 (477)
T ss_dssp             TTCT-------THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTS-SCCCCTTCC
T ss_pred             CCCH-------HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhh-hcccccccc
Confidence            6544       245567777  888999999999999           6 555666554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.70  E-value=1.2e-07  Score=102.97  Aligned_cols=151  Identities=11%  Similarity=0.006  Sum_probs=116.3

Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHH-------CCCCC-------chHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHH
Q 008435          358 KQLKISVENLTPKELIALSVKFLS-------KGDKE-------RPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEA  422 (565)
Q Consensus       358 ~~~~~~~~~~~~~~l~~lA~~l~~-------~g~~~-------eAi~~l~~AL~-~dP~~a~A~~~LG~~~~~~g~~~eA  422 (565)
                      +.+.+...+.+++.++..|..+.+       .|+.+       +|+..|++|++ .+|++..+|..+|.++...|++++|
T Consensus       261 y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A  340 (530)
T 2ooe_A          261 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV  340 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence            455566667789999999988876       79987       99999999998 8999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHH---HHH
Q 008435          423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV---LAR  499 (565)
Q Consensus       423 ~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~---La~  499 (565)
                      .+.|+++++.     +|.++      ..+|..+|.++.+.|++++|++.|++ +....|.+...  +...++..   .+.
T Consensus       341 ~~~~~~al~~-----~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~-Al~~~~~~~~~--~~~~a~~~~~~~~~  406 (530)
T 2ooe_A          341 HSIYNRLLAI-----EDIDP------TLVYIQYMKFARRAEGIKSGRMIFKK-AREDARTRHHV--YVTAALMEYYCSKD  406 (530)
T ss_dssp             HHHHHHHHHS-----SSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCTTCCTHH--HHHHHHHHHHHTCC
T ss_pred             HHHHHHHhCc-----cccCc------hHHHHHHHHHHHHhcCHHHHHHHHHH-HHhccCCchHH--HHHHHHHHHHHcCC
Confidence            9999999754     45432      13577788899999999999999999 55566654432  22222221   111


Q ss_pred             HH--HHHHHHHHhcCCCcHHHHHhh
Q 008435          500 YV--ANITFLIFATSPSIINLLTVS  522 (565)
Q Consensus       500 ~l--~~~l~~Al~l~P~~~~~l~~~  522 (565)
                      .-  .+.|+++++.+|+...++...
T Consensus       407 ~~~A~~~~e~al~~~p~~~~~~~~~  431 (530)
T 2ooe_A          407 KSVAFKIFELGLKKYGDIPEYVLAY  431 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHCCCCHHHHHHH
Confidence            11  788999999999987766443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.68  E-value=2.2e-07  Score=92.95  Aligned_cols=134  Identities=10%  Similarity=-0.054  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a------~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      ...+..++..+...|++++|+..++++++..+...      ..++.+|.++...|++++|+++|++|++..     +...
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~  149 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-----LTGI  149 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTC-----CCSS
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-----hcCC
Confidence            34567888889999999999999999999988765      457789999999999999999999997532     2111


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--ccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhc
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN--LKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFAT  511 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~--~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l  511 (565)
                       +......++.++|.+|..+|++++|+++|+++..  ...|++....   ..++.++|..+         .+++++++++
T Consensus       150 -~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~---~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          150 -DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD---VKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             -CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch---HHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence             1222345788999999999999999999999442  3344443211   13455666655         5555666554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.68  E-value=1.8e-07  Score=96.12  Aligned_cols=139  Identities=12%  Similarity=-0.010  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a-----~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      .+....+|..+...|++++|+..++++++..|.+.     .++..+|.++...|++++|+++++++++..     +... 
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~-   87 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-----RQHD-   87 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHTT-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-----HhcC-
Confidence            35567788899999999999999999999988663     378899999999999999999999998763     1100 


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh-hhhhhhHHHHHHHHH---------HHHHHHHHhcCC
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS-KAHYYDGLVVLARYV---------ANITFLIFATSP  513 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~-~~~~~~~~~~La~~l---------~~~l~~Al~l~P  513 (565)
                      +......++.++|.++..+|++++|+++++++.. ..+..... .......+..+|..+         .++++++++..|
T Consensus        88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ-LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            1112234577899999999999999999999443 32211000 001112233455444         788899988877


Q ss_pred             C
Q 008435          514 S  514 (565)
Q Consensus       514 ~  514 (565)
                      .
T Consensus       167 ~  167 (373)
T 1hz4_A          167 S  167 (373)
T ss_dssp             T
T ss_pred             c
Confidence            5

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.68  E-value=6.6e-08  Score=82.39  Aligned_cols=73  Identities=16%  Similarity=0.157  Sum_probs=67.5

Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       360 ~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +.+...+.++..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++++++
T Consensus        10 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A           10 AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             HHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445556678999999999999999999999999999999999999999999999999999999999999875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.68  E-value=1.8e-07  Score=93.59  Aligned_cols=123  Identities=11%  Similarity=-0.036  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN------ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~------A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ..+...+..+...|++++|+..++++++..+.+..      .+..+|.++...|++++|+++|++|++..     +... 
T Consensus        76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~-----~~~~-  149 (293)
T 3u3w_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-----LTGI-  149 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC-----CCCS-
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh-----cccc-
Confidence            34556688889999999999999999998887766      34468999999999999999999997642     2111 


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--CCCCchhhhhhhhHHHHHHHHH
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK--EPEEPKSKAHYYDGLVVLARYV  501 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l--~P~~~~~~~~~~~~~~~La~~l  501 (565)
                      +......++.++|.+|..+|++++|+++|+++....  .|.+.   ......+.++|..+
T Consensus       150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~nlg~~y  206 (293)
T 3u3w_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE---EFDVKVRYNHAKAL  206 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH---HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch---hHHHHHHHHHHHHH
Confidence            112223468889999999999999999999954311  11222   12334555677665

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.67  E-value=1.2e-07  Score=102.97  Aligned_cols=143  Identities=13%  Similarity=-0.043  Sum_probs=107.0

Q ss_pred             hhcCC-CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008435          359 QLKIS-VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLA  436 (565)
Q Consensus       359 ~~~~~-~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a-~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~  436 (565)
                      .+.+. ..+.++..++..|..+...|++++|+..|+++++.+|+++ .+|..+|.++.+.|++++|.+.|++|++.    
T Consensus       310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~----  385 (530)
T 2ooe_A          310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED----  385 (530)
T ss_dssp             HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Confidence            34443 3455788899999999999999999999999999999996 69999999999999999999999999643    


Q ss_pred             CCCCChhhhhHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCC
Q 008435          437 GHPTEPEAIDLLIVASQWSGVA-CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSP  513 (565)
Q Consensus       437 ~~P~~~~~~~~~~~a~~~lG~a-~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P  513 (565)
                       .|...       ..+...+.. +...|++++|++.|++ +...+|+++..+..|.+....+|..-  ...|++++..+|
T Consensus       386 -~~~~~-------~~~~~~a~~~~~~~~~~~~A~~~~e~-al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~  456 (530)
T 2ooe_A          386 -ARTRH-------HVYVTAALMEYYCSKDKSVAFKIFEL-GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  456 (530)
T ss_dssp             -TTCCT-------HHHHHHHHHHHHHTCCHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred             -cCCch-------HHHHHHHHHHHHHcCChhHHHHHHHH-HHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence             23221       122233333 4469999999999999 66688988866543333222222222  789999999865


Q ss_pred             C
Q 008435          514 S  514 (565)
Q Consensus       514 ~  514 (565)
                      .
T Consensus       457 ~  457 (530)
T 2ooe_A          457 L  457 (530)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.67  E-value=7.7e-08  Score=97.28  Aligned_cols=109  Identities=10%  Similarity=-0.017  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      +..+..+|..+.. |++++|+.+|++|+++.|+.      +.++..+|.++...|++++|+++|++++++.     +.+.
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~  189 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY-----KEME  189 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTT
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHcC
Confidence            4567889999988 99999999999999998765      7899999999999999999999999998763     1111


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                       .......++..+|.++..+|++++|+.+|++ +. .+|.+...
T Consensus       190 -~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~-al-~~p~~~~~  230 (307)
T 2ifu_A          190 -NYPTCYKKCIAQVLVQLHRADYVAAQKCVRE-SY-SIPGFSGS  230 (307)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HT-TSTTSTTS
T ss_pred             -ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH-Hh-CCCCCCCC
Confidence             1112223677799999999999999999999 56 88887643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.67  E-value=3.6e-07  Score=98.25  Aligned_cols=61  Identities=15%  Similarity=0.208  Sum_probs=33.9

Q ss_pred             CHHHHHHHHHHHHH----CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 008435          368 TPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAI  430 (565)
Q Consensus       368 ~~~~l~~lA~~l~~----~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl  430 (565)
                      +++.++.+|..+..    .+++++|+.+|+++++.  +++.+++.||.+|..    .+++++|+++|++|+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~  106 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA  106 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            44555555555555    55555555555555544  455555555555555    555555555555554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.65  E-value=1.5e-07  Score=81.04  Aligned_cols=108  Identities=13%  Similarity=0.114  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435          404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE  483 (565)
Q Consensus       404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~  483 (565)
                      ++++.+|.++...|++++|++.|+++++.     +|+++    ....+++++|.++...|++++|++.|++ +...+|++
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~-~~~~~p~~   72 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGV----YTPNALYWLGESYYATRNFQLAEAQFRD-LVSRYPTH   72 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSST----THHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHCCCC
Confidence            46789999999999999999999999765     35433    1124678899999999999999999999 66688887


Q ss_pred             chhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435          484 PKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVSNII  525 (565)
Q Consensus       484 ~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~~~~  525 (565)
                      +..    ..++..+|.++         .++++++++.+|+.........+.
T Consensus        73 ~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           73 DKA----AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             TTH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             ccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            421    12233455444         789999999999987765544443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.65  E-value=1.2e-07  Score=101.57  Aligned_cols=156  Identities=9%  Similarity=0.010  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHCC---CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          369 PKELIALSVKFLSKG---DKERPIPLLQLALNKEPDNINALILMGQTQLQK----GLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g---~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~----g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      +..++.+|..+...|   ++++|+.+|+++.+.+|.++.+++.+|.+|...    +++++|+++|+++.        |.+
T Consensus       176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--------~g~  247 (452)
T 3e4b_A          176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--------PGY  247 (452)
T ss_dssp             TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--------GGS
T ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--------CCC
Confidence            447888888888888   888999999999999999999889999998655    68899999999983        222


Q ss_pred             hhhhhHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-------------HHHH
Q 008435          442 PEAIDLLIVASQWSGVA-C--IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-------------ANIT  505 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a-~--~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-------------~~~l  505 (565)
                      +       .+++++|.+ +  ...|++++|+++|++++.   ..++..       ...+|..+             .++|
T Consensus       248 ~-------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~g~~~A-------~~~Lg~~y~~G~g~~~d~~~A~~~~  310 (452)
T 3e4b_A          248 P-------ASWVSLAQLLYDFPELGDVEQMMKYLDNGRA---ADQPRA-------ELLLGKLYYEGKWVPADAKAAEAHF  310 (452)
T ss_dssp             T-------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---TTCHHH-------HHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             H-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---CCCHHH-------HHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            2       467778887 4  468889999999988543   234432       22444443             6778


Q ss_pred             HHHHhcCCCcHHHHHhhh-----------hhhHHHhhhhhhhhhhhhhhhccchhHHH
Q 008435          506 FLIFATSPSIINLLTVSN-----------IIDIIYVNCYELKKKRFASCFFGFSVLYV  552 (565)
Q Consensus       506 ~~Al~l~P~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (565)
                      +++.   |++..+.....           +....+..+..+.+.-+++|+++||..|.
T Consensus       311 ~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          311 EKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS  365 (452)
T ss_dssp             HTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred             HHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence            8877   65554432221           22234444455666678888999998886

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.64  E-value=4.8e-08  Score=83.87  Aligned_cols=68  Identities=16%  Similarity=0.213  Sum_probs=64.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL  433 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~  433 (565)
                      +.++..++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++..
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44578899999999999999999999999999999999999999999999999999999999997753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.64  E-value=2.5e-07  Score=78.67  Aligned_cols=110  Identities=9%  Similarity=0.022  Sum_probs=80.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435          400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK  479 (565)
Q Consensus       400 P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l  479 (565)
                      |+.+.+++.+|.++...|++++|+++|+++++.     +|.++       .++..+|.++...|++++|+.++++ +...
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~-~~~~   67 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNM-------TYITNQAAVYFEKGDYNKCRELCEK-AIEV   67 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccH-------HHHHHHHHHHHHhccHHHHHHHHHH-HHhh
Confidence            345788999999999999999999999999765     34432       4677899999999999999999999 5556


Q ss_pred             CCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhhh
Q 008435          480 EPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVSN  523 (565)
Q Consensus       480 ~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~~  523 (565)
                      +|+++........++..+|..+         .++++++++.+|+ ........
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~  119 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQ  119 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence            6654222111123444555555         7888999998885 44444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.63  E-value=5.7e-07  Score=96.70  Aligned_cols=62  Identities=16%  Similarity=0.119  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHHHH----CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 008435          368 TPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAIS  431 (565)
Q Consensus       368 ~~~~l~~lA~~l~~----~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~  431 (565)
                      +++.++.+|..+..    .+++++|+.+|++|.+.  +++.+++.||.+|..    .+++++|+++|++|++
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  143 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE  143 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            45666677776666    66677777777776654  466777777777766    6677777777777644

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.61  E-value=3.1e-08  Score=91.19  Aligned_cols=75  Identities=15%  Similarity=0.173  Sum_probs=67.8

Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHCCCCC----------chHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----------
Q 008435          358 KQLKISVENLTPKELIALSVKFLSKGDKE----------RPIPLLQLALNKEPDNINALILMGQTQLQKG----------  417 (565)
Q Consensus       358 ~~~~~~~~~~~~~~l~~lA~~l~~~g~~~----------eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g----------  417 (565)
                      +.+.+...|.+++.++..|..+.+.++++          +|+..|++||++||+++++|+.+|.+|...|          
T Consensus        25 ~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~  104 (158)
T 1zu2_A           25 AENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK  104 (158)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhh
Confidence            35666777889999999999999988765          9999999999999999999999999999875          


Q ss_pred             -CHHHHHHHHHHHHHh
Q 008435          418 -LLEEAVEYLECAISK  432 (565)
Q Consensus       418 -~~~eA~~~~~rAl~l  432 (565)
                       ++++|+++|++|+++
T Consensus       105 g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A          105 HNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHh
Confidence             899999999999775

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.60  E-value=1.7e-06  Score=89.21  Aligned_cols=122  Identities=10%  Similarity=-0.046  Sum_probs=88.3

Q ss_pred             CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHc
Q 008435          385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGL--LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ  462 (565)
Q Consensus       385 ~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~--~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~  462 (565)
                      +++++.++++++..+|++..+|+..+.++...|+  +++++++++++++.     +|++.       .+|.+.+.+....
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~-----dprNy-------~AW~~R~~vl~~l  157 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNF-------HCWDYRRFVAAQA  157 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHHh
Confidence            5678888888888888888888888888888884  78888888888654     45543       4677788888888


Q ss_pred             CC-HHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH--------------HHHH--HHHHHHHHhcCCCcHHHH
Q 008435          463 EK-WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL--------------ARYV--ANITFLIFATSPSIINLL  519 (565)
Q Consensus       463 g~-~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L--------------a~~l--~~~l~~Al~l~P~~~~~l  519 (565)
                      |+ ++++++++++ +...+|.|..++.+....+..+              +...  .+++++++..+|++..+|
T Consensus       158 ~~~~~eel~~~~~-~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW  230 (331)
T 3dss_A          158 AVAPAEELAFTDS-LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW  230 (331)
T ss_dssp             TCCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             CcCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            87 5888888888 5567888876654433333333              1111  788888888888877665

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.60  E-value=5.3e-07  Score=92.61  Aligned_cols=101  Identities=14%  Similarity=0.057  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKE--------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d--------P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      ...++.+|..+...|++++|+.+++++++..        |....++..+|.++...|++++|+++++++++..     +.
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~  167 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL-----SS  167 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----TT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-----hc
Confidence            3457789999999999999999999999975        4567788999999999999999999999998753     21


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      .. ... ...++..+|.++...|++++|.++++++.
T Consensus       168 ~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~  201 (373)
T 1hz4_A          168 YQ-PQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLE  201 (373)
T ss_dssp             SC-GGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cC-cHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            11 111 22467789999999999999999999944

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.59  E-value=4e-07  Score=94.74  Aligned_cols=143  Identities=18%  Similarity=0.142  Sum_probs=100.3

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCC---CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKG----LLEEAVEYLECAIS  431 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~---~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g----~~~eA~~~~~rAl~  431 (565)
                      ..+..|.+.++.++|.+|..++..++   .++|+.+|++|+++||+++.+|..++.+|....    ......+..+++++
T Consensus       186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~  265 (372)
T 3ly7_A          186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID  265 (372)
T ss_dssp             HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence            34557778899999999999987654   578999999999999999999999999986322    11222233333332


Q ss_pred             hh-hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------
Q 008435          432 KL-FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------  501 (565)
Q Consensus       432 l~-~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------  501 (565)
                      .. .+..+|.++       .++..++..+...|++++|+.++++ +..++|. .  .     ++..+|..+         
T Consensus       266 a~~a~~~~~~~a-------~~~~alal~~l~~gd~d~A~~~l~r-Al~Ln~s-~--~-----a~~llG~~~~~~G~~~eA  329 (372)
T 3ly7_A          266 NIVTLPELNNLS-------IIYQIKAVSALVKGKTDESYQAINT-GIDLEMS-W--L-----NYVLLGKVYEMKGMNREA  329 (372)
T ss_dssp             HHHTCGGGTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCC-H--H-----HHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcccCCcCH-------HHHHHHHHHHHhCCCHHHHHHHHHH-HHhcCCC-H--H-----HHHHHHHHHHHCCCHHHH
Confidence            11 122334333       4566678888888999999999999 6667753 2  1     122444433         


Q ss_pred             HHHHHHHHhcCCCcHH
Q 008435          502 ANITFLIFATSPSIIN  517 (565)
Q Consensus       502 ~~~l~~Al~l~P~~~~  517 (565)
                      ++.|++|+.++|....
T Consensus       330 ~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          330 ADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHhcCCCcCh
Confidence            8999999999998764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.58  E-value=2.1e-07  Score=81.74  Aligned_cols=102  Identities=13%  Similarity=-0.024  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      ...+..+|..+...|++++|+.+++++++..++.      ..++..+|.++...|++++|+++++++++.. -.  ..  
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~--~~--  123 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-QE--LK--  123 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH--TT--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HH--cc--
Confidence            4568889999999999999999999999987664      7899999999999999999999999998763 00  00  


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                       +......++..+|.++...|++++|+++++++.
T Consensus       124 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A          124 -DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             -chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence             122334567889999999999999999999943

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.56  E-value=3e-07  Score=76.94  Aligned_cols=67  Identities=22%  Similarity=0.232  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCC---CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435          365 ENLTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS  431 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~---~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~  431 (565)
                      .+.+++.+...|..++..++   .++|..++++||+.||+++++++.+|..+++.|+|++|+++|+++++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            35679999999999976554   78999999999999999999999999999999999999999999954

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.54  E-value=3.7e-07  Score=87.21  Aligned_cols=103  Identities=14%  Similarity=0.095  Sum_probs=84.6

Q ss_pred             CHHHHHHHHHHHHHCC----CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          368 TPKELIALSVKFLSKG----DKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g----~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      +++.++.+|..+.. +    ++++|+.+|++|+  +++++.+++.||.+|..    .+++++|+++|++|++.     ++
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~  120 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SE  120 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TT
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CC
Confidence            57889999999887 6    8999999999995  56899999999999998    88999999999999542     12


Q ss_pred             CChhhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhccCCCCch
Q 008435          440 TEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       440 ~~~~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                      .     +....+++++|.+|..    .+++++|+++|++++. . |.++.
T Consensus       121 ~-----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~-~~~~~  163 (212)
T 3rjv_A          121 S-----DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS-L-SRTGY  163 (212)
T ss_dssp             S-----HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-T-SCTTH
T ss_pred             C-----cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-c-CCCHH
Confidence            1     1223578899999999    8999999999999554 3 44553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.54  E-value=8.4e-08  Score=98.93  Aligned_cols=102  Identities=12%  Similarity=0.080  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      .++.+|..+...|++++|+.+++++++.+|+++.+|+.+|.+|...|++++|+++|+++++     .+|++.       .
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-----l~p~~~-------~  299 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK-----YAPDDK-------A  299 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCH-------H
Confidence            6789999999999999999999999999999999999999999999999999999999954     345543       3


Q ss_pred             HHHHHHHH-HHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          451 ASQWSGVA-CIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       451 a~~~lG~a-~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                      ++..++.+ ....++.+++.+.|++ +...+|+++.
T Consensus       300 a~~~L~~l~~~~~~~~~~a~~~~~~-~l~~~p~~~~  334 (338)
T 2if4_A          300 IRRELRALAEQEKALYQKQKEMYKG-IFKGKDEGGA  334 (338)
T ss_dssp             ------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCCCCC
Confidence            45567776 4567788899999999 6667777653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.54  E-value=2.6e-07  Score=92.46  Aligned_cols=103  Identities=13%  Similarity=0.081  Sum_probs=80.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435          400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK  479 (565)
Q Consensus       400 P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l  479 (565)
                      |+++.+++.+|..+...|++++|+++|++|++.     +|+++       .++.++|.++..+|++++|++.+++ +..+
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~-al~~   67 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVA-------VYYTNRALCYLKMQQPEQALADCRR-ALEL   67 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HTTS
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCccH-------HHHHHHHHHHHHhcCHHHHHHHHHH-HHHh
Confidence            678999999999999999999999999999765     46543       4678899999999999999999999 6778


Q ss_pred             CCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCc
Q 008435          480 EPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSI  515 (565)
Q Consensus       480 ~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~  515 (565)
                      +|+++........++..++..-  ++.++++++++|+.
T Consensus        68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9988754332211221122111  78899999999854

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.53  E-value=3.5e-07  Score=73.50  Aligned_cols=73  Identities=22%  Similarity=0.347  Sum_probs=63.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435          401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE  480 (565)
Q Consensus       401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~  480 (565)
                      +++.+++.+|.++...|++++|+++|+++++.     +|.++       .++..+|.++...|++++|++++++ +...+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~   73 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQK-ALELD   73 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHC
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHHHhhHHHHHHHHHH-HHhcC
Confidence            56899999999999999999999999999765     35433       4678899999999999999999999 66688


Q ss_pred             CCCchh
Q 008435          481 PEEPKS  486 (565)
Q Consensus       481 P~~~~~  486 (565)
                      |+++..
T Consensus        74 p~~~~~   79 (91)
T 1na3_A           74 PNNAEA   79 (91)
T ss_dssp             TTCHHH
T ss_pred             CCCHHH
Confidence            888754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.53  E-value=3.4e-07  Score=99.57  Aligned_cols=113  Identities=19%  Similarity=0.156  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      ....+.+..+..+|++++|+.+++++|++     .|++   +..+.+||.+|..+|+|++|+.+|+++++.......|+.
T Consensus       310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  389 (490)
T 3n71_A          310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN  389 (490)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34556677788899999999999999984     3455   678999999999999999999999999887533444543


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----ccCCCCchh
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN----LKEPEEPKS  486 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~----~l~P~~~~~  486 (565)
                      +    .....+.++|.+|..+|++++|+.+|+++..    .+.|++|..
T Consensus       390 p----~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~  434 (490)
T 3n71_A          390 A----QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT  434 (490)
T ss_dssp             H----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             H----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence            3    2335688899999999999999999999543    356777754

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.53  E-value=1.5e-06  Score=89.68  Aligned_cols=144  Identities=8%  Similarity=0.009  Sum_probs=115.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCC--CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhcCCCCC
Q 008435          365 ENLTPKELIALSVKFLSKGD--KERPIPLLQLALNKEPDNINALILMGQTQLQKGL-LEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~--~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~-~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      .+.+.......+..+...|+  +++++.+++++++.||.|..||...+.+....|+ +++++++++++++.     +|.|
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-----~p~N  178 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-----NFSN  178 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CSCC
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----CCCC
Confidence            45678889999999988884  7899999999999999999999999999999998 69999999999875     4655


Q ss_pred             hhhhhHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHH---------
Q 008435          442 PEAIDLLIVASQWSGVACIRQ--------------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA---------  498 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~--------------g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La---------  498 (565)
                      .       .|+.+.+.++...              +.++++++++++ +...+|+|...+. |..+++.-+         
T Consensus       179 ~-------SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~-ai~~~P~d~SaW~-Y~r~ll~~~~~~~~~~~~  249 (331)
T 3dss_A          179 Y-------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN-AFFTDPNDQSAWF-YHRWLLGAGSGRCELSVE  249 (331)
T ss_dssp             H-------HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH-HHHHSTTCHHHHH-HHHHHHHSSSCGGGCCHH
T ss_pred             H-------HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHH-HHHhCCCCHHHHH-HHHHHHHhccCccccchH
Confidence            4       4677788887776              568999999999 6779999997654 233332222         


Q ss_pred             --HHH---HHHHHHHHhcCCCcHHHHHhh
Q 008435          499 --RYV---ANITFLIFATSPSIINLLTVS  522 (565)
Q Consensus       499 --~~l---~~~l~~Al~l~P~~~~~l~~~  522 (565)
                        ..+   +++++++++++|+.+-++...
T Consensus       250 ~~~~l~~el~~~~elle~~pd~~w~l~~~  278 (331)
T 3dss_A          250 KSTVLQSELESCKELQELEPENKWCLLTI  278 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence              223   899999999999987655444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.51  E-value=6.1e-07  Score=74.76  Aligned_cols=70  Identities=20%  Similarity=0.312  Sum_probs=61.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      ++++++.+|.++...|++++|+++|+++++.     +|.++       .+++++|.++..+|++++|++.+++ +..++|
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p   69 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNP-------VGYSNKAMALIKLGEYTQAIQMCQQ-GLRYTS   69 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHTSCS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCC
Confidence            5789999999999999999999999999765     45543       4688899999999999999999999 667888


Q ss_pred             CCc
Q 008435          482 EEP  484 (565)
Q Consensus       482 ~~~  484 (565)
                      ++.
T Consensus        70 ~~~   72 (111)
T 2l6j_A           70 TAE   72 (111)
T ss_dssp             STT
T ss_pred             Ccc
Confidence            874

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.50  E-value=3.9e-07  Score=84.37  Aligned_cols=102  Identities=13%  Similarity=0.010  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhh---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNK---EP----DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~---dP----~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      +..++.+|..+...|++++|+.+++++++.   .+    ..+.++..+|.++...|++++|+++++++++..   .... 
T Consensus        66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~-  141 (203)
T 3gw4_A           66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA---QQAD-  141 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HHTT-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---Hhcc-
Confidence            567889999999999999999999999998   44    346789999999999999999999999998753   0011 


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                        +......++.++|.++...|++++|+++++++.
T Consensus       142 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          142 --DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence              112223457889999999999999999999944

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.49  E-value=5.5e-06  Score=85.89  Aligned_cols=162  Identities=7%  Similarity=-0.077  Sum_probs=118.6

Q ss_pred             HCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008435          381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC  459 (565)
Q Consensus       381 ~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g-~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~  459 (565)
                      ..+..++|+++++++|.+||++..+|+..|.++...| .++++++.+++++.     .+|++.       .++...+.++
T Consensus        66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-----~nPKny-------~aW~hR~wlL  133 (349)
T 3q7a_A           66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-----QNLKSY-------QVWHHRLLLL  133 (349)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----TTCCCH-------HHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-----hCCCcH-------HHHHHHHHHH
Confidence            3445568999999999999999999999999999999 59999999999964     467765       4788889999


Q ss_pred             HHc-C-CHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH----------HHHHHHHHHHhcCCCcHHHHHhh-----
Q 008435          460 IRQ-E-KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR----------YVANITFLIFATSPSIINLLTVS-----  522 (565)
Q Consensus       460 ~~~-g-~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~----------~l~~~l~~Al~l~P~~~~~l~~~-----  522 (565)
                      ... + +++++++.+++ +...+|++..++.+....+..++.          ...++++++++.||++-.+|..-     
T Consensus       134 ~~l~~~~~~~EL~~~~k-~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~  212 (349)
T 3q7a_A          134 DRISPQDPVSEIEYIHG-SLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV  212 (349)
T ss_dssp             HHHCCSCCHHHHHHHHH-HTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHhcCCChHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            887 8 99999999999 667899988665433222222332          11788999999999877665322     


Q ss_pred             --hh-------hhHHHhhhhhh--hhhhhhhhhccchhHHHHHH
Q 008435          523 --NI-------IDIIYVNCYEL--KKKRFASCFFGFSVLYVMLV  555 (565)
Q Consensus       523 --~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  555 (565)
                        .+       .++.++.+.++  ......+||..+.-++...+
T Consensus       213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          213 SRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             TSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence              11       22333333222  23557889988777766544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.44  E-value=2.9e-07  Score=92.72  Aligned_cols=105  Identities=19%  Similarity=0.042  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKE-PDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-P~~-a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ..+.+|..+++.|++++|+.+|++++... |.+ ..+++.+|.++...|++++|+.+|+++++     + |.++   ...
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-----g-~~~P---~~~  207 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND-----S-PAGE---ACA  207 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----S-TTTT---TTH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----C-CCCc---ccc
Confidence            78999999999999999999999887753 322 46999999999999999999999999952     1 2111   112


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      ..+++++|.++.++|+.+||++.|++ +...+|+ +..
T Consensus       208 ~da~~~~glaL~~lGr~deA~~~l~~-a~a~~P~-~~~  243 (282)
T 4f3v_A          208 RAIAWYLAMARRSQGNESAAVALLEW-LQTTHPE-PKV  243 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSCC-HHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCc-HHH
Confidence            35788899999999999999999999 6668888 543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.40  E-value=1.3e-06  Score=90.60  Aligned_cols=142  Identities=6%  Similarity=-0.131  Sum_probs=113.5

Q ss_pred             CCCHHHHHHHHHHHHHCC-CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          366 NLTPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQK-G-LLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g-~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~-g-~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      +.+.......+..+...| ++++++.+++++|..+|++..+|+..+.++... + +++++++++++++     ..+|++.
T Consensus        85 P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L-----~~dpkNy  159 (349)
T 3q7a_A           85 PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL-----LPDPKNY  159 (349)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT-----SSCTTCH
T ss_pred             chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-----HhCCCCH
Confidence            445666777888888888 599999999999999999999999999999998 8 8999999999994     4567655


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH------HH---HHHH
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWE--------EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR------YV---ANIT  505 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~--------eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~------~l---~~~l  505 (565)
                             .++...+.+..+.|+++        ++++.+++ +...+|.|..++.+....+..++.      .+   .+++
T Consensus       160 -------~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k-~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~  231 (349)
T 3q7a_A          160 -------HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE-MLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYI  231 (349)
T ss_dssp             -------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHhccccccchhhHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence                   57888889988888888        99999999 666899988665433222222322      12   8899


Q ss_pred             HHHHhcCCCcHHHHH
Q 008435          506 FLIFATSPSIINLLT  520 (565)
Q Consensus       506 ~~Al~l~P~~~~~l~  520 (565)
                      ++++..+|++..+|.
T Consensus       232 ~~aI~~~P~n~SaW~  246 (349)
T 3q7a_A          232 LKSIHLIPHNVSAWN  246 (349)
T ss_dssp             HHHHHHCTTCHHHHH
T ss_pred             HHHHHhCCCCHHHHH
Confidence            999999999877663

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.34  E-value=3e-06  Score=90.72  Aligned_cols=157  Identities=14%  Similarity=0.057  Sum_probs=111.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHH----HHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCC
Q 008435          368 TPKELIALSVKFLSKGDKERPIPL----LQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~----l~~AL~~dP~~a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      +++..+.+|..+...+.+++++..    ++.+...+|.   +++.||.+|...|   ++++|+++|+++++.     ++.
T Consensus       140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-----g~~  211 (452)
T 3e4b_A          140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR-----GTV  211 (452)
T ss_dssp             CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----TCS
T ss_pred             CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----CCH
Confidence            466788999999998877766555    5555555555   9999999999999   999999999999654     233


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH------------HHH
Q 008435          441 EPEAIDLLIVASQWSGVACIRQ----EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------------ANI  504 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~----g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------------~~~  504 (565)
                      ++       ..++++|.+|...    +++++|+++|++++    |.++....       .+|..+            .++
T Consensus       212 ~a-------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~-------~Lg~~~~~~~~~~d~~~A~~~  273 (452)
T 3e4b_A          212 TA-------QRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV-------SLAQLLYDFPELGDVEQMMKY  273 (452)
T ss_dssp             CH-------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH-------HHHHHHHHSGGGCCHHHHHHH
T ss_pred             HH-------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH-------HHHHHHHhCCCCCCHHHHHHH
Confidence            22       2357799999665    79999999999954    67765422       445441            789


Q ss_pred             HHHHHhcCCCcHHHHHhhh-----------hhhHHHhhhhhhhhhhhhhhhccchhHHHH
Q 008435          505 TFLIFATSPSIINLLTVSN-----------IIDIIYVNCYELKKKRFASCFFGFSVLYVM  553 (565)
Q Consensus       505 l~~Al~l~P~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (565)
                      |+++.+.+  +..++....           +....+..+..+. ..+++|+++||++|..
T Consensus       274 ~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          274 LDNGRAAD--QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHC
Confidence            99988765  333222111           2233444444455 7799999999999875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.32  E-value=1.8e-06  Score=92.41  Aligned_cols=108  Identities=13%  Similarity=-0.014  Sum_probs=83.1

Q ss_pred             HHHHHHHHCCCCCchHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          374 ALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       374 ~lA~~l~~~g~~~eAi~~l~~AL~~-----dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +........|++++|+.+++++|++     .|+|   +..+.+||.+|..+|+|++|+++|+++++.......|+.+   
T Consensus       303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp---  379 (433)
T 3qww_A          303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL---  379 (433)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH---
T ss_pred             HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh---
Confidence            3344444568999999999999984     4666   5678999999999999999999999998875333444433   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----ccCCCCch
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGN----LKEPEEPK  485 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~----~l~P~~~~  485 (565)
                       .....+.++|.+|..+|+++||+.+|+++..    .+.|++|.
T Consensus       380 -~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          380 -NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             -HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence             2234688899999999999999999999443    23555553

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.29  E-value=2.7e-06  Score=90.92  Aligned_cols=112  Identities=16%  Similarity=0.103  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      .+.+.....+..+|++++|+..++++++.     .|+|   +..+.++|.+|..+|+|++|+++++++++.......|+.
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H  367 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH  367 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence            45556666777899999999999999974     4555   678999999999999999999999999887533334443


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----ccCCCCch
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN----LKEPEEPK  485 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~----~l~P~~~~  485 (565)
                      +    .....+.++|.+|..+|++++|+.+|+++..    .+.|++|.
T Consensus       368 p----~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~  411 (429)
T 3qwp_A          368 P----VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL  411 (429)
T ss_dssp             H----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred             h----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence            3    2334688899999999999999999999443    24566654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.28  E-value=3.5e-06  Score=70.35  Aligned_cols=74  Identities=14%  Similarity=-0.010  Sum_probs=63.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          399 EPDNINALILMGQTQLQKGL---LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       399 dP~~a~A~~~LG~~~~~~g~---~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      +|++++++..+|.+++..++   .++|..++++|+++     +|+++       .+...+|..+++.|+|++|+.++++ 
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-----dp~~~-------rA~~~lg~~~~~~g~y~~Ai~~w~~-   68 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-----EPYNE-------AALSLIANDHFISFRFQEAIDTWVL-   68 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-----CcCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-
Confidence            79999999999999987766   69999999999764     57665       5677899999999999999999999 


Q ss_pred             hhccCCCCch
Q 008435          476 GNLKEPEEPK  485 (565)
Q Consensus       476 a~~l~P~~~~  485 (565)
                      +...+|.++.
T Consensus        69 ~l~~~p~~~~   78 (93)
T 3bee_A           69 LLDSNDPNLD   78 (93)
T ss_dssp             HHTCCCTTCC
T ss_pred             HHhhCCCCcc
Confidence            5667777553

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.26  E-value=1.5e-06  Score=71.39  Aligned_cols=90  Identities=16%  Similarity=0.190  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV-ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~-a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      .+..|.++...|++++|++.|+++++.     +|+++       . +++.+|.++...|++++|+++|++ +..++|+++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~p~~~   69 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQT-----EPVGK-------DEAYYLMGNAYRKLGDWQKALNNYQS-AIELNPDSP   69 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSTH-------HHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCcH
Confidence            367899999999999999999999765     45543       3 678899999999999999999999 667899988


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhcCCC
Q 008435          485 KSKAHYYDGLVVLARYVANITFLIFATSPS  514 (565)
Q Consensus       485 ~~~~~~~~~~~~La~~l~~~l~~Al~l~P~  514 (565)
                      ....+   .  .++.. .++++++...+|+
T Consensus        70 ~~~~~---~--~~~~a-~~~~~~~~~~~p~   93 (99)
T 2kc7_A           70 ALQAR---K--MVMDI-LNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHH---H--HHHHH-HHHHCCTTHHHHC
T ss_pred             HHHHH---H--HHHHH-HHHHHHHhccCcc
Confidence            64311   0  11111 4556666666654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.22  E-value=5.7e-06  Score=86.26  Aligned_cols=143  Identities=10%  Similarity=0.111  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----------------NALILMGQTQLQKGLLEEAVEYLECAIS  431 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a-----------------~A~~~LG~~~~~~g~~~eA~~~~~rAl~  431 (565)
                      |...++.|..+...|++++|++.|+++++.+|+..                 .++..+|.+|...|++++|+++|+++++
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44578899999999999999999999999998864                 4689999999999999999999999877


Q ss_pred             hh-----------------hhcCCCCChhh-hh----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          432 KL-----------------FLAGHPTEPEA-ID----------------LLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       432 l~-----------------~l~~~P~~~~~-~~----------------~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      ..                 .+...+++.+. ..                .....+..+|.++...|++++|++.++++..
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            53                 01111221110 00                0012456799999999999999999998543


Q ss_pred             ccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCC
Q 008435          478 LKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSP  513 (565)
Q Consensus       478 ~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P  513 (565)
                      .....+..  ......+..++..+         ..++++++...+
T Consensus       164 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          164 EFKKLDDK--PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHTTSSCS--THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccc--hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            32222211  12234445556555         567777776543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.21  E-value=3.3e-06  Score=75.29  Aligned_cols=87  Identities=17%  Similarity=0.106  Sum_probs=74.8

Q ss_pred             HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      +|..+...+..++|+.+|++|.+.  +++.+++.||.+|..    .+++++|+++|++|.+..       +       ..
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-------~-------~~   94 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-------D-------QD   94 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-------C-------HH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-------C-------HH
Confidence            888887778888899999999987  899999999999998    889999999999996531       1       24


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHhh
Q 008435          451 ASQWSGVACIR----QEKWEEGIAHLERIGN  477 (565)
Q Consensus       451 a~~~lG~a~~~----~g~~~eAi~~leraa~  477 (565)
                      +.+++|.+|..    .+++++|+++|++++.
T Consensus        95 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A           95 GCLILGYKQYAGKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence            67889999999    8999999999999555

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.17  E-value=7e-06  Score=69.47  Aligned_cols=72  Identities=18%  Similarity=0.192  Sum_probs=64.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKE-------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-------P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+++++++.+|..++..|++++|+..|++|++..       +..+.++..+|.++.+.|++++|+.++++|+++     +
T Consensus         2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~   76 (104)
T 2v5f_A            2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----D   76 (104)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred             CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----C
Confidence            4689999999999999999999999999999963       456899999999999999999999999999764     5


Q ss_pred             CCCh
Q 008435          439 PTEP  442 (565)
Q Consensus       439 P~~~  442 (565)
                      |++.
T Consensus        77 P~~~   80 (104)
T 2v5f_A           77 PEHQ   80 (104)
T ss_dssp             TTCH
T ss_pred             CCCH
Confidence            7654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.07  E-value=1.8e-05  Score=79.49  Aligned_cols=105  Identities=14%  Similarity=0.067  Sum_probs=81.8

Q ss_pred             CHHHHHHHHHHHHH-----CCCC------CchHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 008435          368 TPKELIALSVKFLS-----KGDK------ERPIPLLQLALNKEPD--NINALILMGQTQLQK-----GLLEEAVEYLECA  429 (565)
Q Consensus       368 ~~~~l~~lA~~l~~-----~g~~------~eAi~~l~~AL~~dP~--~a~A~~~LG~~~~~~-----g~~~eA~~~~~rA  429 (565)
                      +++.++=.|.....     .|++      .+|...+++|+++||+  +..+|..+|.+|.+.     |+.++|.++|+||
T Consensus       151 dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA  230 (301)
T 3u64_A          151 DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL  230 (301)
T ss_dssp             GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence            56777666665533     2433      4689999999999999  677999999999996     9999999999999


Q ss_pred             HHhhhhcCCCCC-hhhhhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhccCCCC-ch
Q 008435          430 ISKLFLAGHPTE-PEAIDLLIVASQWSGVACIR-QEKWEEGIAHLERIGNLKEPEE-PK  485 (565)
Q Consensus       430 l~l~~l~~~P~~-~~~~~~~~~a~~~lG~a~~~-~g~~~eAi~~leraa~~l~P~~-~~  485 (565)
                      +++     +|+. .       .+++..|..++. .|++++|.+++++ +...+|+. |.
T Consensus       231 L~L-----nP~~~i-------d~~v~YA~~l~~~~gd~~~a~~~L~k-AL~a~p~~~P~  276 (301)
T 3u64_A          231 TRY-----CSAHDP-------DHHITYADALCIPLNNRAGFDEALDR-ALAIDPESVPH  276 (301)
T ss_dssp             HHH-----CCTTCS-------HHHHHHHHHTTTTTTCHHHHHHHHHH-HHHCCGGGCSS
T ss_pred             HHh-----CCCCCc-------hHHHHHHHHHHHhcCCHHHHHHHHHH-HHcCCCCCCCC
Confidence            775     4642 3       345667888877 5999999999999 66677664 53

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.04  E-value=2.6e-05  Score=71.04  Aligned_cols=89  Identities=10%  Similarity=0.033  Sum_probs=74.3

Q ss_pred             chHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC
Q 008435          387 RPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE  463 (565)
Q Consensus       387 eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g  463 (565)
                      .+.+.|++.++.++.+.++.+.+|.++.+.+   +.++|+..++..++.     +     .++.....+|++|.+++++|
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----~-----~p~~~rd~lY~LAv~~~kl~   85 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----G-----SKEEQRDYVFYLAVGNYRLK   85 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----S-----CHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----C-----CccchHHHHHHHHHHHHHcc
Confidence            4567788888999999999999999999988   667999999999753     1     02233467899999999999


Q ss_pred             CHHHHHHHHHHHhhccCCCCchh
Q 008435          464 KWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       464 ~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      +|++|+.++++ +.+.+|++.+.
T Consensus        86 ~Y~~A~~y~~~-lL~ieP~n~QA  107 (152)
T 1pc2_A           86 EYEKALKYVRG-LLQTEPQNNQA  107 (152)
T ss_dssp             CHHHHHHHHHH-HHHHCTTCHHH
T ss_pred             CHHHHHHHHHH-HHhcCCCCHHH
Confidence            99999999999 77789988754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.03  E-value=1.4e-05  Score=67.51  Aligned_cols=79  Identities=10%  Similarity=0.101  Sum_probs=62.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      +++-++.+|..++..|+|++|+.+|++|++..  ..++. .  ......++..+|.++.++|++++|+.++++ +..++|
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~--~~~~~-~--~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~-al~l~P   77 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQL--DEGEI-S--TIDKVSVLDYLSYAVYQQGDLDKALLLTKK-LLELDP   77 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTTCC-C--SSCHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCT
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhh--hccCC-C--cccHHHHHHHHHHHHHHccCHHHHHHHHHH-HHhcCC
Confidence            46678999999999999999999999998763  11110 0  111234678899999999999999999999 667899


Q ss_pred             CCchh
Q 008435          482 EEPKS  486 (565)
Q Consensus       482 ~~~~~  486 (565)
                      +++..
T Consensus        78 ~~~~~   82 (104)
T 2v5f_A           78 EHQRA   82 (104)
T ss_dssp             TCHHH
T ss_pred             CCHHH
Confidence            98754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.96  E-value=1.8e-05  Score=85.86  Aligned_cols=103  Identities=13%  Similarity=0.052  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      +..+..+|..+..+|++++|+.+++++|+.     -|++   +..+++||.+|..+|++++|+.+|++|+++......|+
T Consensus       351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            566788999999999999999999999974     3555   66899999999999999999999999998864445565


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      .+.    .......++.++..+|++++|...|+++
T Consensus       431 Hp~----~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          431 HPI----TKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             SHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            442    2234567999999999999999999983

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.92  E-value=8.5e-05  Score=88.32  Aligned_cols=104  Identities=19%  Similarity=0.183  Sum_probs=79.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC---
Q 008435          363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP---  439 (565)
Q Consensus       363 ~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P---  439 (565)
                      .....+++.++++|.++...|++++|+..|.+|     +++.+|..+|.++.+.|++++|+++|+.|.+..   .++   
T Consensus      1099 Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Id 1170 (1630)
T 1xi4_A         1099 AERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVE 1170 (1630)
T ss_pred             HHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---cccccc
Confidence            333456889999999999999999999999887     999999999999999999999999999986542   111   


Q ss_pred             ----------CChhhhhHH-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          440 ----------TEPEAIDLL-----IVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       440 ----------~~~~~~~~~-----~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                                +..+....+     ...+..+|..+...|+|++|+.+|++
T Consensus      1171 t~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A         1171 TELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred             HHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence                      000000000     11355688888888888888888888

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.91  E-value=3e-05  Score=68.96  Aligned_cols=77  Identities=9%  Similarity=-0.013  Sum_probs=64.6

Q ss_pred             CCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH-
Q 008435          383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR-  461 (565)
Q Consensus       383 g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~-  461 (565)
                      +++++|+.+|+++.+.+..  .+.  +|.+|...+..++|+++|++|.+..       +       ..+.+++|.+|.. 
T Consensus         9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------~-------~~a~~~Lg~~y~~G   70 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACELN-------S-------GNGCRFLGDFYENG   70 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHTT-------C-------HHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCC-------C-------HHHHHHHHHHHHcC
Confidence            3678899999999998744  444  9999999999999999999996531       1       2478889999999 


Q ss_pred             ---cCCHHHHHHHHHHHhh
Q 008435          462 ---QEKWEEGIAHLERIGN  477 (565)
Q Consensus       462 ---~g~~~eAi~~leraa~  477 (565)
                         .+++++|+++|++++.
T Consensus        71 ~g~~~d~~~A~~~~~~Aa~   89 (138)
T 1klx_A           71 KYVKKDLRKAAQYYSKACG   89 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHc
Confidence               8999999999999665

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.86  E-value=9e-05  Score=75.46  Aligned_cols=136  Identities=11%  Similarity=-0.010  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCC------CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhhcCCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEP------DNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP------~~a~A~~~LG~~~~~~g--~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      .+.....+..++..|+.++|.+.+++..+.+|      +.......-|++....|  ++++|...|+++.+.     .|+
T Consensus       136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-----~p~  210 (310)
T 3mv2_B          136 TELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-----FPT  210 (310)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-----SCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-----CCC
Confidence            44444555555555555555555555555555      22222222243344444  555555555554211     111


Q ss_pred             ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc----------CCCCchhhhhhhhHHHHHHHHH----HHHHH
Q 008435          441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK----------EPEEPKSKAHYYDGLVVLARYV----ANITF  506 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l----------~P~~~~~~~~~~~~~~~La~~l----~~~l~  506 (565)
                           ......+  +. ++.++|++++|.+.+++ +..+          +|+|+.....    .+.++...    .++++
T Consensus       211 -----~~~~~lL--ln-~~~~~g~~~eAe~~L~~-l~~~~p~~~~k~~~~p~~~~~LaN----~i~l~~~lgk~a~~l~~  277 (310)
T 3mv2_B          211 -----WKTQLGL--LN-LHLQQRNIAEAQGIVEL-LLSDYYSVEQKENAVLYKPTFLAN----QITLALMQGLDTEDLTN  277 (310)
T ss_dssp             -----HHHHHHH--HH-HHHHHTCHHHHHHHHHH-HHSHHHHTTTCHHHHSSHHHHHHH----HHHHHHHTTCTTHHHHH
T ss_pred             -----cccHHHH--HH-HHHHcCCHHHHHHHHHH-HHHhcccccccccCCCCCHHHHHH----HHHHHHHhChHHHHHHH
Confidence                 0000112  22 89999999999999987 5544          3666643211    11122222    78999


Q ss_pred             HHHhcCCCcHHHHHhh
Q 008435          507 LIFATSPSIINLLTVS  522 (565)
Q Consensus       507 ~Al~l~P~~~~~l~~~  522 (565)
                      ++.+.+|++.-+..-.
T Consensus       278 qL~~~~P~hp~i~d~~  293 (310)
T 3mv2_B          278 QLVKLDHEHAFIKHHQ  293 (310)
T ss_dssp             HHHHTTCCCHHHHHHH
T ss_pred             HHHHhCCCChHHHHHH
Confidence            9999999987665443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.85  E-value=0.00017  Score=73.43  Aligned_cols=106  Identities=12%  Similarity=0.045  Sum_probs=80.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEP--DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP--~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +...++.+|.++...|++++|++.+++.+..+|  ++.+++..+++++...|+.++|.+.+++..+.     +|+.. ..
T Consensus        99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-----~~d~~-~~  172 (310)
T 3mv2_B           99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-----IEDTV-SG  172 (310)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCHHH-HH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Ccccc-cc
Confidence            466678999999999999999999999999997  99999999999999999999999999988543     22000 00


Q ss_pred             hHHHHHHHHHHH--HHHHcC--CHHHHHHHHHHHhhccCCC
Q 008435          446 DLLIVASQWSGV--ACIRQE--KWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       446 ~~~~~a~~~lG~--a~~~~g--~~~eAi~~leraa~~l~P~  482 (565)
                      +.  .....++.  +....|  ++++|...|++ +....|+
T Consensus       173 ~d--~~l~~Laea~v~l~~g~~~~q~A~~~f~E-l~~~~p~  210 (310)
T 3mv2_B          173 DN--EMILNLAESYIKFATNKETATSNFYYYEE-LSQTFPT  210 (310)
T ss_dssp             HH--HHHHHHHHHHHHHHHTCSTTTHHHHHHHH-HHTTSCS
T ss_pred             ch--HHHHHHHHHHHHHHhCCccHHHHHHHHHH-HHHhCCC
Confidence            01  12233433  355555  99999999999 4544444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.75  E-value=0.00037  Score=82.95  Aligned_cols=88  Identities=11%  Similarity=0.145  Sum_probs=71.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC---------------------------CHHHHHHHHHHHHHcCCH
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPD---------------------------NINALILMGQTQLQKGLL  419 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~---------------------------~a~A~~~LG~~~~~~g~~  419 (565)
                      .+++.+.+.|..+.+.|++++|+++|+.|.+.+++                           +...+..+|..+...|++
T Consensus      1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A         1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH
Confidence            57888999999999999999999999998876644                           223456677777777777


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          420 EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       420 ~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      ++|+.+|.+|                    ..|..+|.++.++|++++|++.+++
T Consensus      1212 eeA~~~Y~kA--------------------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A         1212 DAAKLLYNNV--------------------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred             HHHHHHHHhh--------------------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            7777777776                    1255699999999999999999999

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.60  E-value=8.5e-05  Score=67.60  Aligned_cols=79  Identities=14%  Similarity=0.201  Sum_probs=68.4

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCC---CCCchHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435          359 QLKISVENLTPKELIALSVKFLSKG---DKERPIPLLQLALNKE-P-DNINALILMGQTQLQKGLLEEAVEYLECAISKL  433 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g---~~~eAi~~l~~AL~~d-P-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~  433 (565)
                      .......+.+.+..++.|+.+.+.+   +.++++.+++..++.+ | ++.+++|.||..+++.|+|++|.++++++++. 
T Consensus        22 ~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-  100 (152)
T 1pc2_A           22 QSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-  100 (152)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-
T ss_pred             HHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-
Confidence            3344445568999999999999988   6679999999999999 8 67999999999999999999999999999765 


Q ss_pred             hhcCCCCCh
Q 008435          434 FLAGHPTEP  442 (565)
Q Consensus       434 ~l~~~P~~~  442 (565)
                          +|++.
T Consensus       101 ----eP~n~  105 (152)
T 1pc2_A          101 ----EPQNN  105 (152)
T ss_dssp             ----CTTCH
T ss_pred             ----CCCCH
Confidence                57665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.55  E-value=0.00012  Score=76.00  Aligned_cols=110  Identities=9%  Similarity=0.001  Sum_probs=80.5

Q ss_pred             cCCCCCCCHHHHHHHHHHHHH---CCCCC-chHHHHH------HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435          361 KISVENLTPKELIALSVKFLS---KGDKE-RPIPLLQ------LALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI  430 (565)
Q Consensus       361 ~~~~~~~~~~~l~~lA~~l~~---~g~~~-eAi~~l~------~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl  430 (565)
                      .+..+|..+..+..++..+..   .+... .....++      .++..+|+++.++..+|..+...|++++|+.+++||+
T Consensus       225 Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl  304 (372)
T 3ly7_A          225 IVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGI  304 (372)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            444445567777666666542   22111 1112222      2346789999999999999999999999999999998


Q ss_pred             HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       431 ~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      ++     +|.        ..++..+|.++...|++++|+++|++ +.+++|.++
T Consensus       305 ~L-----n~s--------~~a~~llG~~~~~~G~~~eA~e~~~~-AlrL~P~~~  344 (372)
T 3ly7_A          305 DL-----EMS--------WLNYVLLGKVYEMKGMNREAADAYLT-AFNLRPGAN  344 (372)
T ss_dssp             HH-----CCC--------HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSCSHH
T ss_pred             hc-----CCC--------HHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCcC
Confidence            75     232        13567799999999999999999999 778999876

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.49  E-value=0.00026  Score=65.00  Aligned_cols=105  Identities=14%  Similarity=0.091  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh-cCCC
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---------NALILMGQTQLQKGLLEEAVEYLECAISKLFL-AGHP  439 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a---------~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l-~~~P  439 (565)
                      ..+++....++..|.|+.|+.+...++....++.         ++++.+|++++..|+|.+|+..|++|+..... ..++
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4578889999999999999999999777654443         48999999999999999999999999877411 1111


Q ss_pred             C----------Chh--hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          440 T----------EPE--AIDLLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       440 ~----------~~~--~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      .          .+.  +.....+..|.++.||..+|++++|+..++.
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            0          000  0011124678899999999999999999998

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.42  E-value=0.0037  Score=70.38  Aligned_cols=155  Identities=13%  Similarity=0.031  Sum_probs=103.7

Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHCCCCCchH-HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--
Q 008435          358 KQLKISVENLTPKELIALSVKFLSKGDKERPI-PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF--  434 (565)
Q Consensus       358 ~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi-~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~--  434 (565)
                      |.+.+..-+.+++.++..|.-+...|+.++|. ..|++|+...|++...|...+.+....|++++|.+.|+++++...  
T Consensus       332 Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~  411 (679)
T 4e6h_A          332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD  411 (679)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            44556666778888888888888899999997 999999999999999999999999999999999999999986420  


Q ss_pred             h----cCCCCChhhh----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-----
Q 008435          435 L----AGHPTEPEAI----DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-----  501 (565)
Q Consensus       435 l----~~~P~~~~~~----~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-----  501 (565)
                      .    ...|.+.+..    .....+|........+.|+.++|.+.|+++.....+......       +..+...     
T Consensus       412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ly-------i~~A~lE~~~~~  484 (679)
T 4e6h_A          412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIY-------LENAYIEYHISK  484 (679)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHH-------HHHHHHHHTTTS
T ss_pred             hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHH-------HHHHHHHHHhCC
Confidence            0    0012110000    011123444555666778888888888884332121222211       1111111     


Q ss_pred             -----HHHHHHHHhcCCCcHHHH
Q 008435          502 -----ANITFLIFATSPSIINLL  519 (565)
Q Consensus       502 -----~~~l~~Al~l~P~~~~~l  519 (565)
                           .+.|+++++..|+...+|
T Consensus       485 d~e~Ar~ife~~Lk~~p~~~~~w  507 (679)
T 4e6h_A          485 DTKTACKVLELGLKYFATDGEYI  507 (679)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCchHHH
Confidence                 567777777777766655

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.35  E-value=0.00085  Score=67.33  Aligned_cols=113  Identities=15%  Similarity=0.036  Sum_probs=81.5

Q ss_pred             HHHH-HhhCCCCHHHHHHHHHHHHH---c--CC------HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008435          392 LQLA-LNKEPDNINALILMGQTQLQ---K--GL------LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC  459 (565)
Q Consensus       392 l~~A-L~~dP~~a~A~~~LG~~~~~---~--g~------~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~  459 (565)
                      +.++ -+.+|++++++++.|.+...   .  |.      .++|...++||+++     ||+.     ..-.+|..+|..|
T Consensus       140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL-----DP~~-----~~GsA~~~LG~lY  209 (301)
T 3u64_A          140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL-----WPSY-----QEGAVWNVLTKFY  209 (301)
T ss_dssp             HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH-----CTTH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh-----CCCc-----ccCHHHHHHHHHH
Confidence            3444 44789999999999998753   2  32      48899999999876     3431     1124788899999


Q ss_pred             HHc-----CCHHHHHHHHHHHhhccCCCC-chhhhhhhhHHHHH-HHHH--HHHHHHHHhcCCCc
Q 008435          460 IRQ-----EKWEEGIAHLERIGNLKEPEE-PKSKAHYYDGLVVL-ARYV--ANITFLIFATSPSI  515 (565)
Q Consensus       460 ~~~-----g~~~eAi~~leraa~~l~P~~-~~~~~~~~~~~~~L-a~~l--~~~l~~Al~l~P~~  515 (565)
                      ...     |+.++|.++|+| +..++|+. ......|.+.++.. +..-  .++++++++.+|..
T Consensus       210 ~~vPp~~gGd~ekA~~~fer-AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          210 AAAPESFGGGMEKAHTAFEH-LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHSCTTTTCCHHHHHHHHHH-HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HhCCCccCCCHHHHHHHHHH-HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            884     999999999999 77899975 76655554433321 2111  78999999998873

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.31  E-value=0.00059  Score=72.68  Aligned_cols=51  Identities=12%  Similarity=0.052  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA  429 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA  429 (565)
                      .+...|..+...|++++|..+|.++        ..|..+|.++.+.|++++|+++|++|
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            6778888899999999999999977        47888999999999999999999988

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.28  E-value=0.00066  Score=76.53  Aligned_cols=169  Identities=9%  Similarity=-0.047  Sum_probs=111.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhh-----------CCC-----------CHHHHHHHHHHHHHcCCHHHHH
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNK-----------EPD-----------NINALILMGQTQLQKGLLEEAV  423 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----------dP~-----------~a~A~~~LG~~~~~~g~~~eA~  423 (565)
                      |.+..-.+..+......|+.++|...|++++..           .|.           +..+|...+.+..+.|..++|.
T Consensus       375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR  454 (679)
T 4e6h_A          375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR  454 (679)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence            445666677788888899999999999999985           253           4568999999988999999999


Q ss_pred             HHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-
Q 008435          424 EYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-  501 (565)
Q Consensus       424 ~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~-g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-  501 (565)
                      ..|++|++..     |.   ...   ..+...+....+. ++.+.|.+.|++ +....|+++..+..|.+-....+..- 
T Consensus       455 ~vf~~A~~~~-----~~---~~~---~lyi~~A~lE~~~~~d~e~Ar~ife~-~Lk~~p~~~~~w~~y~~fe~~~~~~~~  522 (679)
T 4e6h_A          455 KIFGKCRRLK-----KL---VTP---DIYLENAYIEYHISKDTKTACKVLEL-GLKYFATDGEYINKYLDFLIYVNEESQ  522 (679)
T ss_dssp             HHHHHHHHTG-----GG---SCT---HHHHHHHHHHHTTTSCCHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHhc-----CC---CCh---HHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence            9999997531     10   001   1233344444454 459999999999 55578888866544444333333222 


Q ss_pred             -HHHHHHHHhcCCC---cHHHHHhhhhhhHHHhhhh--hhhhhhhhhhhcc
Q 008435          502 -ANITFLIFATSPS---IINLLTVSNIIDIIYVNCY--ELKKKRFASCFFG  546 (565)
Q Consensus       502 -~~~l~~Al~l~P~---~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~  546 (565)
                       ...|++++...|+   ...+|....+.....+...  ....+|+.++++.
T Consensus       523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence             7899999999883   5566666555443333221  2233455555543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.00057  Score=70.89  Aligned_cols=103  Identities=12%  Similarity=0.090  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNK------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      +.....+|..+...|++++|+.++++++..      .+..++++..+|.+|...|++++|..+|++++...  ...++  
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~--  210 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA--NSIYC--  210 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSCC--
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh--hcCCC--
Confidence            556788999999999999999999999875      45568899999999999999999999999997753  11111  


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                       ........+..+|..+...|++++|..+|.++.
T Consensus       211 -~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          211 -PTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             -CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence             112223456678999999999999999998843

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.08  E-value=0.00071  Score=72.17  Aligned_cols=74  Identities=14%  Similarity=0.021  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      +..+..+|..+..+|++++|+.+++++|+.     -|++   +..+++||.+|..+|+++||+.+|+||+++......|+
T Consensus       340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~  419 (433)
T 3qww_A          340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD  419 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence            456778999999999999999999999974     3455   66799999999999999999999999998763344554


Q ss_pred             Ch
Q 008435          441 EP  442 (565)
Q Consensus       441 ~~  442 (565)
                      .+
T Consensus       420 Hp  421 (433)
T 3qww_A          420 HP  421 (433)
T ss_dssp             CH
T ss_pred             Ch
Confidence            44

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.06  E-value=0.0027  Score=55.73  Aligned_cols=91  Identities=10%  Similarity=0.022  Sum_probs=73.1

Q ss_pred             CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008435          385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEE---AVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR  461 (565)
Q Consensus       385 ~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~e---A~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~  461 (565)
                      ...+...|++++..++.+.++-+.+|+++....+..+   ++..++..++.     +     .+.......|.+|..+++
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~-----~p~~~Rd~lY~LAvg~yk   86 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----G-----SKEEQRDYVFYLAVGNYR   86 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----S-----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----C-----CcchHHHHHHHHHHHHHH
Confidence            3456788888899999999999999999999887766   88888877421     1     122334578889999999


Q ss_pred             cCCHHHHHHHHHHHhhccCCCCchh
Q 008435          462 QEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       462 ~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      .|+|++|+.+++. +...+|++.++
T Consensus        87 lg~Y~~A~~~~~~-lL~~eP~n~QA  110 (126)
T 1nzn_A           87 LKEYEKALKYVRG-LLQTEPQNNQA  110 (126)
T ss_dssp             TTCHHHHHHHHHH-HHHHCTTCHHH
T ss_pred             hhhHHHHHHHHHH-HHHhCCCCHHH
Confidence            9999999999999 77799998764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.97  E-value=0.0014  Score=69.79  Aligned_cols=89  Identities=13%  Similarity=0.063  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT  440 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~  440 (565)
                      +..+..+|..+..+|++++|+.+++++|+.     -|++   +..+++||.+|..+|++++|+.+|++|+++......|+
T Consensus       329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~  408 (429)
T 3qwp_A          329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE  408 (429)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            556778999999999999999999999974     3555   56799999999999999999999999998864445555


Q ss_pred             ChhhhhHHHHHHHHHHHHHHH
Q 008435          441 EPEAIDLLIVASQWSGVACIR  461 (565)
Q Consensus       441 ~~~~~~~~~~a~~~lG~a~~~  461 (565)
                      .+    .......+++.+...
T Consensus       409 Hp----~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          409 HS----LIEDLILLLEECDAN  425 (429)
T ss_dssp             SH----HHHHHHHHHHHHHHH
T ss_pred             Ch----HHHHHHHHHHHHHHH
Confidence            44    222334456555543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.84  E-value=0.0094  Score=63.43  Aligned_cols=91  Identities=13%  Similarity=-0.037  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      .+..+|..+...|++++|++.+++|     +++..|-..+.+....|++++|..+..+.+      .+   +   +.   
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~---a---d~---  209 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VH---A---DE---  209 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TC---H---HH---
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hC---H---hh---
Confidence            4668899999999999999999999     689999999999999999999977776531      11   2   11   


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE  483 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~  483 (565)
                       ...+...|.+.|++++|+.++++ +..+++.+
T Consensus       210 -l~~lv~~Yek~G~~eEai~lLe~-aL~le~ah  240 (449)
T 1b89_A          210 -LEELINYYQDRGYFEELITMLEA-ALGLERAH  240 (449)
T ss_dssp             -HHHHHHHHHHTTCHHHHHHHHHH-HTTSTTCC
T ss_pred             -HHHHHHHHHHCCCHHHHHHHHHH-HhCCcHHH
Confidence             11266789999999999999999 55566444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.62  E-value=0.013  Score=51.47  Aligned_cols=74  Identities=12%  Similarity=0.194  Sum_probs=64.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCc---hHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          365 ENLTPKELIALSVKFLSKGDKER---PIPLLQLALNKE-P-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~e---Ai~~l~~AL~~d-P-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      .+.+.+..+..|+.+....+.++   ++.+++..+..+ | +.-+.+|.||..+++.|+|++|..+.+..++.     +|
T Consensus        31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~-----eP  105 (126)
T 1nzn_A           31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----EP  105 (126)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CC
Confidence            45678999999999998876665   999999999988 6 67899999999999999999999999999765     57


Q ss_pred             CChh
Q 008435          440 TEPE  443 (565)
Q Consensus       440 ~~~~  443 (565)
                      ++.+
T Consensus       106 ~n~Q  109 (126)
T 1nzn_A          106 QNNQ  109 (126)
T ss_dssp             TCHH
T ss_pred             CCHH
Confidence            7654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.84  E-value=0.22  Score=46.19  Aligned_cols=99  Identities=13%  Similarity=0.082  Sum_probs=69.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----h-hcCCCC
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL-----F-LAGHPT  440 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~-----~-l~~~P~  440 (565)
                      .|++.-+.+|   ++.|+++.|.+..+..     ++..-|..||......|+++-|+++|+++=...     + ..++- 
T Consensus         6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~-   76 (177)
T 3mkq_B            6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDV-   76 (177)
T ss_dssp             SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCH-
T ss_pred             CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCH-
Confidence            4788888887   8899999999987765     789999999999999999999999999982211     0 01110 


Q ss_pred             ChhhhhHHH-HH-----HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          441 EPEAIDLLI-VA-----SQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       441 ~~~~~~~~~-~a-----~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                        +...... .+     +.....++..+|+++++++.|.+ ..
T Consensus        77 --e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~-~~  116 (177)
T 3mkq_B           77 --NKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAE-GG  116 (177)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH-TT
T ss_pred             --HHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHH-CC
Confidence              0000000 00     11234567788999999999887 44

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.75  E-value=0.43  Score=42.48  Aligned_cols=96  Identities=13%  Similarity=0.128  Sum_probs=69.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhhcCCCCC
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL---EEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~---~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      ++++++++-.+-..+..++.              +.-..++.+.+|+++....+.   .+++..++..++.     +|.+
T Consensus        15 ~~l~~eeL~~lr~qY~~E~~--------------~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~   75 (144)
T 1y8m_A           15 EPLYPQQLEILRQQVVSEGG--------------PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESR   75 (144)
T ss_dssp             CCCCHHHHHHHHHHHHHTTS--------------TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCST
T ss_pred             CCCCHHHHHHHHHHHHHhcc--------------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----Cccc
Confidence            45677777666655554411              246788889999999888755   5678888777542     3322


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                            ..+-.|.++..++++|+|++|..+.+. +.+.+|+|.++
T Consensus        76 ------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~-lL~~eP~n~QA  113 (144)
T 1y8m_A           76 ------RRECLYYLTIGCYKLGEYSMAKRYVDT-LFEHERNNKQV  113 (144)
T ss_dssp             ------HHHHHHHHHHHHHTTTCHHHHHHHHHH-HHHTCCCCHHH
T ss_pred             ------hhHHHHHHHHHHHHhhhHHHHHHHHHH-HHhcCCCcHHH
Confidence                  224577899999999999999999999 77789998754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.51  E-value=0.12  Score=45.60  Aligned_cols=75  Identities=9%  Similarity=0.073  Sum_probs=64.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCC---CchHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          364 VENLTPKELIALSVKFLSKGDK---ERPIPLLQLALNKEP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       364 ~~~~~~~~l~~lA~~l~~~g~~---~eAi~~l~~AL~~dP-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      ....++...++.|+.+....+.   .+++.+++..++.+| ..-+.+|.||..+++.|+|++|..+.++.+     ..+|
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL-----~~eP  109 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF-----EHER  109 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----TTCT
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----hhCC
Confidence            4556899999999999987644   469999999999999 458899999999999999999999999994     4567


Q ss_pred             CChh
Q 008435          440 TEPE  443 (565)
Q Consensus       440 ~~~~  443 (565)
                      ++.+
T Consensus       110 ~N~Q  113 (134)
T 3o48_A          110 NNKQ  113 (134)
T ss_dssp             TCHH
T ss_pred             CCHH
Confidence            7664

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.35  E-value=0.17  Score=45.57  Aligned_cols=114  Identities=7%  Similarity=-0.023  Sum_probs=74.3

Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH-HHHHcCCHHHH
Q 008435          396 LNKEPDNINALILMGQTQLQKGLL------EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV-ACIRQEKWEEG  468 (565)
Q Consensus       396 L~~dP~~a~A~~~LG~~~~~~g~~------~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~-a~~~~g~~~eA  468 (565)
                      +-.+|+|++.|...-......|+.      ++-.+.|+||++..    -|. . ....-..++.|+-. .+...++.++|
T Consensus         6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~----Pp~-k-~~~wrrYI~LWIrYA~~~ei~D~d~a   79 (161)
T 4h7y_A            6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL----PPD-K-YGQNESFARIQVRFAELKAIQEPDDA   79 (161)
T ss_dssp             ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS----CGG-G-GTTCHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC----Ccc-c-cccHHHHHHHHHHHHHHHHhcCHHHH
Confidence            357899999999999999999999      88999999998753    221 1 11111123333222 23566999999


Q ss_pred             HHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhhh
Q 008435          469 IAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVSN  523 (565)
Q Consensus       469 i~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~~  523 (565)
                      .+.|+.+.. .....++.       ++..|.+.         .+.+.+|+.+.|.-.+.+...-
T Consensus        80 R~vy~~a~~-~hKkFAKi-------wi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~  135 (161)
T 4h7y_A           80 RDYFQMARA-NCKKFAFV-------HISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL  135 (161)
T ss_dssp             HHHHHHHHH-HCTTBHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred             HHHHHHHHH-HhHHHHHH-------HHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            999999434 44444333       23444444         7889999999998777665543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.09  E-value=0.26  Score=43.36  Aligned_cols=96  Identities=11%  Similarity=0.073  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhhcCCCCC
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL---EEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~---~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      ++.+++++-.+-..+.++             + .+--.+.+-+.+|+++....+.   .+++..++..++.     +|  
T Consensus        16 ~~~~~eeL~~l~~qy~~E-------------~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~--   74 (134)
T 3o48_A           16 EPLYPQQLEILRQQVVSE-------------G-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AE--   74 (134)
T ss_dssp             CCCCHHHHHHHHHHHHHT-------------T-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CG--
T ss_pred             CCCCHHHHHHHHHHHHHH-------------h-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----Cc--
Confidence            456677775554444332             1 2233567888888888888754   5678888777542     22  


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                          ....+-++.+++.+.++|+|++|+.+.+. +...+|+|.++
T Consensus        75 ----~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~-lL~~eP~N~QA  114 (134)
T 3o48_A           75 ----SRRRECLYYLTIGCYKLGEYSMAKRYVDT-LFEHERNNKQV  114 (134)
T ss_dssp             ----GGHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHTTCTTCHHH
T ss_pred             ----chhHHHHHHHHHHHHHhhhHHHHHHHHHH-HHhhCCCCHHH
Confidence                12234678899999999999999999999 77789998754

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.98  E-value=0.82  Score=47.51  Aligned_cols=94  Identities=15%  Similarity=0.092  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN----------------------INALILMGQTQLQKGLLEEAVEYLE  427 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----------------------a~A~~~LG~~~~~~g~~~eA~~~~~  427 (565)
                      +.++..|......|+.++|...+++|+.+..+.                      ..+...++..+...|++++|+..++
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            344556666667889999999999999876332                      1244456777888999999999999


Q ss_pred             HHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          428 CAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       428 rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      +++..     +|-+.       .++..+-.++...|+..+|++.|++.
T Consensus       196 ~~~~~-----~P~~E-------~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          196 ALTFE-----HPYRE-------PLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHH-----STTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHh-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99654     35432       35666788999999999999999983

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.98  E-value=0.51  Score=49.79  Aligned_cols=101  Identities=17%  Similarity=0.156  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD---NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~---~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      ....+|..+.+.|++++|.++|.++......   -.+.+...-.++...+++..+..++++|-...  ... .++   +.
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~--~~~-~d~---~~  206 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI--EKG-GDW---ER  206 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTC-CCT---HH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--hcC-CCH---HH
Confidence            4678999999999999999999999885433   37788888889999999999999999996542  111 112   22


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      ........|.++...++|.+|..+|-.+..
T Consensus       207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence            223344567888899999999999988433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.60  E-value=0.23  Score=44.30  Aligned_cols=73  Identities=10%  Similarity=0.093  Sum_probs=63.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCC---CchHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          366 NLTPKELIALSVKFLSKGDK---ERPIPLLQLALNKEP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~---~eAi~~l~~AL~~dP-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      ..+++..++.|+.+....+.   .+++.+++..+..+| +.-+.+|.||..+++.|+|++|..+.+..++     .+|++
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~-----~eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE-----HERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----TCCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCc
Confidence            56899999999999987644   479999999999999 5678999999999999999999999999955     46876


Q ss_pred             hh
Q 008435          442 PE  443 (565)
Q Consensus       442 ~~  443 (565)
                      .+
T Consensus       111 ~Q  112 (144)
T 1y8m_A          111 KQ  112 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=93.35  E-value=0.36  Score=52.09  Aligned_cols=97  Identities=10%  Similarity=-0.031  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      |...+..+...+.+.|+.++|..+|++..+.. .-+...|..+=..|.+.|+.++|.+.|++-.+..   ..|+      
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G---~~Pd------  174 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE---VVPE------  174 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CCCC------
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCC------
Confidence            45567777788899999999999999988753 2367788888889999999999999999986532   2232      


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          447 LLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       447 ~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                        ...|..+-.+|.+.|+.++|.+.|+++
T Consensus       175 --~~ty~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          175 --EPELAALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence              123555777899999999999999994

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=92.92  E-value=1.3  Score=47.58  Aligned_cols=122  Identities=11%  Similarity=-0.087  Sum_probs=73.5

Q ss_pred             hHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh-----------------------
Q 008435          388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA-----------------------  444 (565)
Q Consensus       388 Ai~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~-----------------------  444 (565)
                      ....|++++...|.++..|+..+..+...|+.++|.+.|++|+..      |.+..-                       
T Consensus       198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~------P~~~~l~~~y~~~~e~~~~~~~l~~~~~~  271 (493)
T 2uy1_A          198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM------SDGMFLSLYYGLVMDEEAVYGDLKRKYSM  271 (493)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHHHHHHHHHTTCTHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcHHHHHHHHhhcchhHHHHHHHHHHHh
Confidence            467888888888888888888888888888888888888888642      432100                       


Q ss_pred             ----------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHH--H---HHHHHHHH
Q 008435          445 ----------IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARY--V---ANITFLIF  509 (565)
Q Consensus       445 ----------~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~--l---~~~l~~Al  509 (565)
                                .......|...+....+.|+.++|.+.|++ +.  .|.. ....+...+.......  .   .+.+++++
T Consensus       272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~-A~--~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al  347 (493)
T 2uy1_A          272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE-LG--NEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGL  347 (493)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HT--TSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH-hh--CCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence                      000011233334444567889999999999 42  3331 1112111111111100  0   67788899


Q ss_pred             hcCCCcHHHH
Q 008435          510 ATSPSIINLL  519 (565)
Q Consensus       510 ~l~P~~~~~l  519 (565)
                      +.-|+..+++
T Consensus       348 ~~~~~~~~~~  357 (493)
T 2uy1_A          348 LKHPDSTLLK  357 (493)
T ss_dssp             HHCTTCHHHH
T ss_pred             HHCCCCHHHH
Confidence            8888866554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=92.90  E-value=0.47  Score=50.94  Aligned_cols=113  Identities=12%  Similarity=0.072  Sum_probs=74.8

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH--------------------------
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT--------------------------  412 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~--------------------------  412 (565)
                      .+.+..-+.+++.++..+.-+.+.|+.++|...|++|+.. |++...|...+..                          
T Consensus       203 e~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~  281 (493)
T 2uy1_A          203 NYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVF  281 (493)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------C
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhc
Confidence            3444444566888888888888999999999999999999 9987666554443                          


Q ss_pred             --------------HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhh
Q 008435          413 --------------QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGN  477 (565)
Q Consensus       413 --------------~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g-~~~eAi~~leraa~  477 (565)
                                    ..+.+..++|...|++| .      .|. .   .  ...+...+......| +.+.|.+.|++ +.
T Consensus       282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~------~~~-~---~--~~v~i~~A~lE~~~~~d~~~ar~ife~-al  347 (493)
T 2uy1_A          282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-G------NEG-V---G--PHVFIYCAFIEYYATGSRATPYNIFSS-GL  347 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T------TSC-C---C--HHHHHHHHHHHHHHHCCSHHHHHHHHH-HH
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h------CCC-C---C--hHHHHHHHHHHHHHCCChHHHHHHHHH-HH
Confidence                          11244567777777777 2      121 1   0  112322333333344 69999999999 54


Q ss_pred             ccCCCCchh
Q 008435          478 LKEPEEPKS  486 (565)
Q Consensus       478 ~l~P~~~~~  486 (565)
                      ...|+++..
T Consensus       348 ~~~~~~~~~  356 (493)
T 2uy1_A          348 LKHPDSTLL  356 (493)
T ss_dssp             HHCTTCHHH
T ss_pred             HHCCCCHHH
Confidence            456777754

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.67  E-value=0.44  Score=42.92  Aligned_cols=106  Identities=10%  Similarity=0.063  Sum_probs=79.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCCC------CchHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435          365 ENLTPKELIALSVKFLSKGDK------ERPIPLLQLALNKEPD--------NINALILMGQTQLQKGLLEEAVEYLECAI  430 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~------~eAi~~l~~AL~~dP~--------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl  430 (565)
                      .+.|++.+......+...|+.      ++-++.|++|+..-|-        ++..|...+.. ...++.++|.+.|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            456788888888888878988      7888999999997765        46667777755 46689999999999997


Q ss_pred             HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       431 ~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      +..     .+       +...|...+.-..++|+.++|++.+.+ +.-..|.+.
T Consensus        88 ~~h-----Kk-------FAKiwi~~AqFEiRqgnl~kARkILg~-AiG~~~k~~  128 (161)
T 4h7y_A           88 ANC-----KK-------FAFVHISFAQFELSQGNVKKSKQLLQK-AVERGAVPL  128 (161)
T ss_dssp             HHC-----TT-------BHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTCBCH
T ss_pred             HHh-----HH-------HHHHHHHHHHHHHHcccHHHHHHHHHH-HhccCCCcH
Confidence            631     11       123444455556889999999999999 665777654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.75  E-value=0.35  Score=44.19  Aligned_cols=61  Identities=10%  Similarity=0.119  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC------C-------------------CCHHHHHHHHHHHHHcCCHHHHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKE------P-------------------DNINALILMGQTQLQKGLLEEAV  423 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d------P-------------------~~a~A~~~LG~~~~~~g~~~eA~  423 (565)
                      .+.++..|..++.+|+|.+|...|++||+..      +                   .+.+..|.++.||...+++++|+
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence            4567889999999999999999999997632      1                   22378899999999999999999


Q ss_pred             HHHHHH
Q 008435          424 EYLECA  429 (565)
Q Consensus       424 ~~~~rA  429 (565)
                      ..++..
T Consensus       143 ~~Le~I  148 (167)
T 3ffl_A          143 AILDGI  148 (167)
T ss_dssp             HHHHTS
T ss_pred             HHHhcC
Confidence            998876

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=91.33  E-value=1.2  Score=43.94  Aligned_cols=56  Identities=23%  Similarity=0.200  Sum_probs=51.9

Q ss_pred             HHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       377 ~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      ..+++.|+.++|+..++..++.+|.|+.....+-+++.-.|+|+.|.+.++-+.++
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            35678999999999999999999999999999999999999999999999888665

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.00  E-value=0.26  Score=55.86  Aligned_cols=61  Identities=15%  Similarity=0.164  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA  429 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA  429 (565)
                      ..-+..++.-+..+|+++-|+.+.++|+..-|.+...|+.|+.+|...|+|+.|+-.+.-.
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3467788988999999999999999999999999999999999999999999998766544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.68  E-value=0.49  Score=49.24  Aligned_cols=62  Identities=10%  Similarity=-0.047  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      ....++..+...|++++|+..+++++..||-+-.+|..+=.++.+.|+..+|++.|++.-+.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34456677788999999999999999999999999999999999999999999999998654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=90.37  E-value=0.37  Score=52.00  Aligned_cols=60  Identities=15%  Similarity=0.070  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435          372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS  431 (565)
Q Consensus       372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~  431 (565)
                      +..+|....-...++.|..+|++|+.++|++..+|+.||.++...|+.-+|+-+|.|++.
T Consensus       155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            345676666677889999999999999999999999999999999999999999999964

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.74  E-value=1.5  Score=48.82  Aligned_cols=91  Identities=18%  Similarity=0.051  Sum_probs=57.8

Q ss_pred             HHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---hhcCCCCChhhhhHHHH-H---
Q 008435          379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL---FLAGHPTEPEAIDLLIV-A---  451 (565)
Q Consensus       379 l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~---~l~~~P~~~~~~~~~~~-a---  451 (565)
                      .++.|++++|.+..     ..-++...|..+|..+.+.|+++.|+++|.++=...   .+.....+.+....... +   
T Consensus       662 ~l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~  736 (814)
T 3mkq_A          662 ALKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT  736 (814)
T ss_dssp             HHHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence            36778999888864     445788999999999999999999999999862111   01000111111100000 0   


Q ss_pred             --HHHHHHHHHHcCCHHHHHHHHHH
Q 008435          452 --SQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       452 --~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                        +.....++...|++++|++.|.+
T Consensus       737 ~~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          737 GKFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             TCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CchHHHHHHHHHcCCHHHHHHHHHH
Confidence              11133467778999999998888

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.54  E-value=1.1  Score=49.99  Aligned_cols=102  Identities=13%  Similarity=-0.029  Sum_probs=61.2

Q ss_pred             CchhhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 008435          355 SPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF  434 (565)
Q Consensus       355 ~~~~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~  434 (565)
                      ....+.++.....++..+-.+|..+++.|+++.|+.+|.++-.     .   -.+..++...|+.+...+..+.+...  
T Consensus       667 ~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~---~~l~~l~~~~~~~~~~~~~~~~a~~~--  736 (814)
T 3mkq_A          667 QLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----L---ESLFLLHSSFNNKEGLVTLAKDAETT--  736 (814)
T ss_dssp             CHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----H---HHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred             CHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----h---hhhHHHHHHcCCHHHHHHHHHHHHHc--
Confidence            3333445555555677788889999999999999999998732     2   24455555566666555544444221  


Q ss_pred             hcCCCCChhhhhHHHHHHH------HHHHHHHHcCCHHHHHHHHHH
Q 008435          435 LAGHPTEPEAIDLLIVASQ------WSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       435 l~~~P~~~~~~~~~~~a~~------~lG~a~~~~g~~~eAi~~ler  474 (565)
                        ++.      .....++.      ..-.+|.+.+++++|+..-++
T Consensus       737 --~~~------~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~  774 (814)
T 3mkq_A          737 --GKF------NLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGST  774 (814)
T ss_dssp             --TCH------HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --Cch------HHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHH
Confidence              000      00001111      133468889999999987665

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=86.55  E-value=9.5  Score=40.76  Aligned_cols=82  Identities=9%  Similarity=-0.027  Sum_probs=62.0

Q ss_pred             CCchHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC
Q 008435          385 KERPIPLLQLALNKEP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE  463 (565)
Q Consensus       385 ~~eAi~~l~~AL~~dP-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g  463 (565)
                      .++|.+.|++..+..- -|...|..+-..+.+.|++++|.+.|++..+..   ..|+        ...|..+-.+|.+.|
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---~~Pd--------~~tyn~lI~~~~~~g  154 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG---IQPR--------LRSYGPALFGFCRKG  154 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CCCC--------HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCc--------cceehHHHHHHHHCC
Confidence            4568888888776532 267788999999999999999999999985431   2232        123455667889999


Q ss_pred             CHHHHHHHHHHHhh
Q 008435          464 KWEEGIAHLERIGN  477 (565)
Q Consensus       464 ~~~eAi~~leraa~  477 (565)
                      +.++|.+.|+++..
T Consensus       155 ~~~~A~~l~~~M~~  168 (501)
T 4g26_A          155 DADKAYEVDAHMVE  168 (501)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999999544

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=85.26  E-value=7.4  Score=35.75  Aligned_cols=93  Identities=19%  Similarity=0.277  Sum_probs=69.3

Q ss_pred             HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC-C---------h
Q 008435          373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT-E---------P  442 (565)
Q Consensus       373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~-~---------~  442 (565)
                      ...+..+.-.|.+.+++-++     ..-+-+.+.+--..+|....++..|+.+.+..++-. .+.+|+ |         +
T Consensus        37 lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~k-vd~d~~~d~~~~~ffvd~  110 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGK-VERDPDVDARIQEMFVDP  110 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SBCCCCCCHHHHTTSCCT
T ss_pred             hhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccCcccccccceeeecc
Confidence            45677778888888887654     345678888999999999999999999999997432 334443 1         1


Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                      ++.+.   -+..+|..+.+.|+.+||+.++.+
T Consensus       111 ~DkEf---Fy~l~a~lltq~g~r~EaI~y~~~  139 (242)
T 3kae_A          111 GDEEF---FESLLGDLCTLSGYREEGIGHYVR  139 (242)
T ss_dssp             TCHHH---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHHH---HHHHHHHHHHHhcCHHHhhhHhhh
Confidence            11121   244589999999999999999988

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=83.74  E-value=4.2  Score=42.31  Aligned_cols=99  Identities=13%  Similarity=0.023  Sum_probs=74.2

Q ss_pred             HHHHHHHHHCCCCCchHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435          373 IALSVKFLSKGDKERPIPLLQLALNKEP------DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID  446 (565)
Q Consensus       373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP------~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~  446 (565)
                      ..+|..++..|++.+|...+++.++.-.      .-.+.+..-.++|...+++.++..+|.+|.... -.. +.++   .
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~-~ai-~~~p---~  177 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA-NAI-YCPP---K  177 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHS-CCCH---H
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh-ccC-CCCH---H
Confidence            4789999999999999999998887321      226778888899999999999999999996543 011 1111   1


Q ss_pred             HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHh
Q 008435          447 LLIVASQWSGVACI-RQEKWEEGIAHLERIG  476 (565)
Q Consensus       447 ~~~~a~~~lG~a~~-~~g~~~eAi~~leraa  476 (565)
                      ........-|..+. ..++|.+|...|-++.
T Consensus       178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          178 VQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            12223455788999 8999999999988843

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=82.62  E-value=2.6  Score=47.67  Aligned_cols=76  Identities=16%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             chHHHHHHHHhh--------CCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          387 RPIPLLQLALNK--------EPDNI----------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       387 eAi~~l~~AL~~--------dP~~a----------~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +|+..+.++++.        .+.+.          ..+..-+..+..+|+++-|+++.++|+...     |.+-      
T Consensus       303 ~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-----PseF------  371 (754)
T 4gns_B          303 DMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-----LDSF------  371 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSCH------
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-----chhh------
Confidence            467777777642        33332          345555666778999999999999998763     4332      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLER  474 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~ler  474 (565)
                       ..|+.|+.+|..+|+|+.|+-.+..
T Consensus       372 -~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          372 -ESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhccHHHHHHHHhc
Confidence             5789999999999999999999887

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=82.10  E-value=3.6  Score=45.44  Aligned_cols=83  Identities=11%  Similarity=0.045  Sum_probs=58.2

Q ss_pred             CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008435          382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR  461 (565)
Q Consensus       382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~  461 (565)
                      .+...++...+.+......++ .....++....+.|++++|..+|++.         +.+.   .....+.||+|.++..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~d~~~a~~~~~~l---------~~~~---~~~~r~~YW~~ra~~~  331 (618)
T 1qsa_A          265 NDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTGDRRGLNTWLARL---------PMEA---KEKDEWRYWQADLLLE  331 (618)
T ss_dssp             TTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHS---------CTTG---GGSHHHHHHHHHHHHH
T ss_pred             cCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHc---------cccc---cccHhHHHHHHHHHHH
Confidence            333667788888766544444 34445555566789999999999876         2211   1123578999999999


Q ss_pred             cCCHHHHHHHHHHHhh
Q 008435          462 QEKWEEGIAHLERIGN  477 (565)
Q Consensus       462 ~g~~~eAi~~leraa~  477 (565)
                      +|+.++|..+|++++.
T Consensus       332 ~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          332 RGREAEAKEILHQLMQ  347 (618)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHhc
Confidence            9999999999998543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	565
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431
            + L+ +    GD E           +EPDN   L+L+     Q   L+ +  +   AI 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW 465
           +     +P   EA   L    +  G      E +
Sbjct: 62  Q-----NPLLAEAYSNLGNVYKERGQLQEAIEHY 90

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
              +G+ E  + L + AL   P+   A   +     Q+G L+EA+ + + AI        
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----S 369

Query: 439 PTEPEAIDLLIVA 451
           PT  +A   +   
Sbjct: 370 PTFADAYSNMGNT 382

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 15/121 (12%)

Query: 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434
           L   F ++G+    I   + A+  +P+ ++A I +G    +  + + AV     A+S   
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-- 232

Query: 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494
               P        L             Q   +  I    R   L+ P  P   A+     
Sbjct: 233 ---SPNHAVVHGNL-------ACVYYEQGLIDLAIDTYRRAIELQ-PHFP--DAYCNLAN 279

Query: 495 V 495
            
Sbjct: 280 A 280

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 358 KQLKISVEN--LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ 415
           K  +   EN      +     ++ L +GD    + L + A+ ++P ++ A   +G TQ +
Sbjct: 6   KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65

Query: 416 KGLLEEAVEYLECAIS 431
                 A+  L   + 
Sbjct: 66  NEQELLAISALRRCLE 81

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 12/83 (14%)

Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
            Q        +       G  +LQ+G L  AV   E A+ +      P   EA   L   
Sbjct: 8   YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-----DPKHMEAWQYL--- 59

Query: 452 SQWSGVACIRQEKWEEGIAHLER 474
               G      E+    I+ L R
Sbjct: 60  ----GTTQAENEQELLAISALRR 78

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 12/105 (11%)

Query: 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439
           LS+G  ++ + LL  A+   P + +      +     G  E A E L  +I        P
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FP 61

Query: 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484
                   L              +  ++          L E EE 
Sbjct: 62  EYLPGASQL-------RHLVKAAQARKDFAQGAATAKVLGENEEL 99

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 8/120 (6%)

Query: 380 LSKGDKERPIPLLQLALNKEPDN-----INALILMGQTQLQKGLLEEAVEYLECAISKLF 434
           ++ G+ +    L +LAL + P       I A  ++G+    KG L  ++  ++       
Sbjct: 23  INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ--- 79

Query: 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494
           +A            ++       A    +   E      ++ N +  E+           
Sbjct: 80  MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 139

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 14/79 (17%), Positives = 26/79 (32%)

Query: 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429
              I    + L +    + I    L L  +      L  +     +K   ++A E L  A
Sbjct: 87  DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146

Query: 430 ISKLFLAGHPTEPEAIDLL 448
            S      H    +A++ +
Sbjct: 147 TSMKSEPRHSKIDKAMECV 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	565
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.55
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.51
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.49
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.47
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.46
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.36
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.34
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.32
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.31
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.27
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.21
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.18
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.17
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.13
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.12
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.11
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.09
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.05
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.05
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.97
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.94
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.93
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.89
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.84
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.79
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.78
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.76
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.72
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.66
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.66
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.64
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.59
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.57
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.54
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.47
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.44
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.36
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.28
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.24
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.2
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.94
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.92
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.68
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.55
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.25
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.23
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.14
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.0
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	81.7

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=4.4e-14  Score=135.88  Aligned_cols=178  Identities=15%  Similarity=0.077  Sum_probs=125.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      .++.++.+|..+...|++++|+..|++||+++|+++.+|+.+|.++...|++++|+++|++++++     +|+++     
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-----  105 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN-----  105 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCT-----
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH-----Hhhhh-----
Confidence            36788999999999999999999999999999999999999999999999999999999999765     46544     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-HH-HHHHHHhcCCCcH---HHHHhh
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-AN-ITFLIFATSPSII---NLLTVS  522 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-~~-~l~~Al~l~P~~~---~~l~~~  522 (565)
                        .++.++|.++..+|++++|++.|++ +...+|++.....+...+.......- .. ..+.....++...   ......
T Consensus       106 --~a~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (259)
T d1xnfa_         106 --YAHLNRGIALYYGGRDKLAQDDLLA-FYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL  182 (259)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHT
T ss_pred             --hhHHHHHHHHHHHhhHHHHHHHHHH-HHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHH
Confidence              4688899999999999999999999 66688888754332211111111111 22 2233333333321   111111


Q ss_pred             ---hh---hhHHHhhh--hhhhhhhhhhhhccchhHHHHHHHHH
Q 008435          523 ---NI---IDIIYVNC--YELKKKRFASCFFGFSVLYVMLVAML  558 (565)
Q Consensus       523 ---~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (565)
                         ..   .+......  .....++..++|+++|.+|...|+--
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  226 (259)
T d1xnfa_         183 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD  226 (259)
T ss_dssp             TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHH
Confidence               11   11111111  11334678899999999999887643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.6e-14  Score=120.09  Aligned_cols=107  Identities=21%  Similarity=0.152  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      .+++...|..+...|++++|+.+|+++|+.+|+++.+|..+|.++...|++++|++.|++++++     +|+++      
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~------   71 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWG------   71 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh-----ccchh------
Confidence            4678899999999999999999999999999999999999999999999999999999999765     46544      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                       .+++++|.++..+|++++|+..|++ +..++|+++....
T Consensus        72 -~~~~~~g~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~~~  109 (117)
T d1elwa_          72 -KGYSRKAAALEFLNRFEEAKRTYEE-GLKHEANNPQLKE  109 (117)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCTTCHHHHH
T ss_pred             -hHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHHHH
Confidence             4788999999999999999999999 7779999986533

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.9e-14  Score=139.23  Aligned_cols=171  Identities=14%  Similarity=0.055  Sum_probs=135.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      +.+++.+..+|..+...|++++|+..+++++..+|.++..+..+|.++...|++++|+++|++++++     +|+++   
T Consensus       200 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---  271 (388)
T d1w3ba_         200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFP---  271 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCH---
T ss_pred             cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---
Confidence            4467888999999999999999999999999999999999999999999999999999999999654     56544   


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcH
Q 008435          446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSII  516 (565)
Q Consensus       446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~  516 (565)
                          .++..+|.++...|++++|++.+++ +....|.++....       .++..+         +++++++++++|+..
T Consensus       272 ----~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  339 (388)
T d1w3ba_         272 ----DAYCNLANALKEKGSVAEAEDCYNT-ALRLCPTHADSLN-------NLANIKREQGNIEEAVRLYRKALEVFPEFA  339 (388)
T ss_dssp             ----HHHHHHHHHHHHHSCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHh-hhccCCccchhhh-------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence                4677899999999999999999999 6667787765433       333333         789999999999977


Q ss_pred             HHHHh-------hhhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHHH
Q 008435          517 NLLTV-------SNIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLVA  556 (565)
Q Consensus       517 ~~l~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  556 (565)
                      .++..       .++.+++.+.+.++.  ++.++++|.++|.+|.+++|
T Consensus       340 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            65433       233334433333322  35699999999999988764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-13  Score=136.14  Aligned_cols=177  Identities=14%  Similarity=0.091  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      .+..+++|..+++.|++++|+.+|+++++.+|+++++|+.+|.++...|++++|+++|++|+++     +|++.      
T Consensus        19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~------   87 (323)
T d1fcha_          19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-----KPDNQ------   87 (323)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc-----ccccc------
Confidence            3446899999999999999999999999999999999999999999999999999999999765     46544      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhh---------------------------------------
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH---------------------------------------  489 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~---------------------------------------  489 (565)
                       .++..+|.++...|++++|++.+++ +...+|.+......                                       
T Consensus        88 -~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_          88 -TALMALAVSFTNESLQRQACEILRD-WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccccccccccccccccccchhh-HHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence             4577899999999999999999999 55566654321000                                       


Q ss_pred             -----hhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHH-------hhhhhhHHHhhhhhh--hhhhhhhhhcc
Q 008435          490 -----YYDGLVVLARYV---------ANITFLIFATSPSIINLLT-------VSNIIDIIYVNCYEL--KKKRFASCFFG  546 (565)
Q Consensus       490 -----~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~  546 (565)
                           ....+..+|..+         ++++++++..+|+...++.       ..++.+++.+.+..+  .+++++++|++
T Consensus       166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  245 (323)
T d1fcha_         166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN  245 (323)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHH
Confidence                 001122333333         6778888888888766543       223333333333322  23568899999


Q ss_pred             chhHHHHHHHHH
Q 008435          547 FSVLYVMLVAML  558 (565)
Q Consensus       547 ~~~~~~~~~~~~  558 (565)
                      +|++|..+++..
T Consensus       246 lg~~~~~~g~~~  257 (323)
T d1fcha_         246 LGISCINLGAHR  257 (323)
T ss_dssp             HHHHHHHHTCHH
T ss_pred             HHHHHHHCCCHH
Confidence            999998887543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-13  Score=123.61  Aligned_cols=107  Identities=15%  Similarity=0.096  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ++.+..+|..+++.|++++|+.+|+++++++|+++.+|+.+|.++...|++++|++.|++++++     +|++.      
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-----~p~~~------   78 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYI------   78 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH-----cccch------
Confidence            5678899999999999999999999999999999999999999999999999999999999765     46544      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                       .++..+|.++..+|++++|++.+++ +..++|+++....
T Consensus        79 -~a~~~~g~~~~~~g~~~eA~~~~~~-a~~~~p~~~~~~~  116 (159)
T d1a17a_          79 -KGYYRRAASNMALGKFRAALRDYET-VVKVKPHDKDAKM  116 (159)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHH
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCHHHHH
Confidence             5788899999999999999999999 7778999986543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3e-13  Score=136.28  Aligned_cols=173  Identities=8%  Similarity=-0.017  Sum_probs=133.8

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhcCCC
Q 008435          361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL-LEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~-~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      .|.-.+...+.+..+|..+.+.+++++|+.++++||+++|++..||+.+|.++...|+ +++|+++++++++.     +|
T Consensus        35 ~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~-----~p  109 (315)
T d2h6fa1          35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----QP  109 (315)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CT
T ss_pred             ccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----HH
Confidence            4444444567777889999999999999999999999999999999999999999875 89999999999765     46


Q ss_pred             CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHh
Q 008435          440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFA  510 (565)
Q Consensus       440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~  510 (565)
                      ++.       .++.++|.++..+|++++|++.+++ +..++|++...+.       .+|.++         +++++++++
T Consensus       110 ~~~-------~a~~~~~~~~~~l~~~~eAl~~~~k-al~~dp~n~~a~~-------~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1         110 KNY-------QVWHHRRVLVEWLRDPSQELEFIAD-ILNQDAKNYHAWQ-------HRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             TCH-------HHHHHHHHHHHHHTCCTTHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             hhh-------hHHHHHhHHHHhhccHHHHHHHHhh-hhhhhhcchHHHH-------HHHHHHHHHHhhHHHHHHHHHHHH
Confidence            554       5788899999999999999999999 6778999876533       334333         899999999


Q ss_pred             cCCCcHHHHHhhhh-------------hhHHHhhhhhh--hhhhhhhhhccchhHHHH
Q 008435          511 TSPSIINLLTVSNI-------------IDIIYVNCYEL--KKKRFASCFFGFSVLYVM  553 (565)
Q Consensus       511 l~P~~~~~l~~~~~-------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  553 (565)
                      +||++..+|.....             ....++.+..+  ..+..+++|.++|.++..
T Consensus       175 ~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~  232 (315)
T d2h6fa1         175 EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD  232 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred             HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence            99998776543221             11222322222  224588899998888754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.4e-13  Score=127.35  Aligned_cols=105  Identities=16%  Similarity=0.110  Sum_probs=95.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~  447 (565)
                      +++++.++|..++..|++++|+..|++||+++|+++.+|..+|.+|...|++++|+++|++|++     .+|++.     
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~-----l~p~~~-----   72 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-----LDGQSV-----   72 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----SCTTCH-----
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH-----hCCCcH-----
Confidence            6889999999999999999999999999999999999999999999999999999999999954     467654     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435          448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK  485 (565)
Q Consensus       448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~  485 (565)
                        .+++++|.+|..+|++++|+..|++ +..++|++..
T Consensus        73 --~a~~~lg~~~~~l~~~~~A~~~~~~-al~l~p~~~~  107 (201)
T d2c2la1          73 --KAHFFLGQCQLEMESYDEAIANLQR-AYSLAKEQRL  107 (201)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTC
T ss_pred             --HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCcccHH
Confidence              4788999999999999999999999 5556776553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.9e-12  Score=125.28  Aligned_cols=139  Identities=16%  Similarity=0.080  Sum_probs=119.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435          365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA  444 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~  444 (565)
                      .+.++..+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|++.|++++..     .|.+.  
T Consensus       233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~--  305 (388)
T d1w3ba_         233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-----CPTHA--  305 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-----CCccc--
Confidence            45567888999999999999999999999999999999999999999999999999999999999654     34332  


Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCc
Q 008435          445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSI  515 (565)
Q Consensus       445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~  515 (565)
                           ..+..+|.++...|++++|++.|++ +...+|+++...       ..+|..+         +++++++++++|++
T Consensus       306 -----~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~-------~~la~~~~~~g~~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         306 -----DSLNNLANIKREQGNIEEAVRLYRK-ALEVFPEFAAAH-------SNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             -----HHHHHHHHHHHTTTCHHHHHHHHHH-HTTSCTTCHHHH-------HHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             -----hhhhHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence                 3567799999999999999999999 667889887543       2556555         89999999999999


Q ss_pred             HHHHHhhh
Q 008435          516 INLLTVSN  523 (565)
Q Consensus       516 ~~~l~~~~  523 (565)
                      .+++....
T Consensus       373 ~~a~~~lg  380 (388)
T d1w3ba_         373 ADAYSNMG  380 (388)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876553

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.34  E-value=2.3e-12  Score=109.78  Aligned_cols=93  Identities=16%  Similarity=0.123  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      ..+..|..+.+.|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|++|+++     +|+++       .
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~   85 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI-------A   85 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------H
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc-----ccccc-------c
Confidence            46789999999999999999999999999999999999999999999999999999999765     46654       4


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      ++..+|.+|..+|++++|++.++|.
T Consensus        86 a~~~la~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          86 VHAALAVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHH
Confidence            7888999999999999999999993

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.7e-11  Score=121.35  Aligned_cols=147  Identities=14%  Similarity=0.086  Sum_probs=118.0

Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       360 ~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      +.+...|.+++.++.+|..+...|++++|+..++++++++|++..+|..+|.++...|++++|++.+++++...     |
T Consensus        44 ~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~  118 (323)
T d1fcha_          44 AAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-----P  118 (323)
T ss_dssp             HHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----T
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhc-----c
Confidence            34555666799999999999999999999999999999999999999999999999999999999999997652     1


Q ss_pred             CChh--------------------------------hhhH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          440 TEPE--------------------------------AIDL------------LIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       440 ~~~~--------------------------------~~~~------------~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      ....                                ....            ...++..+|.++...|++++|+..|++ 
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-  197 (323)
T d1fcha_         119 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA-  197 (323)
T ss_dssp             TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred             chHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccc-
Confidence            1000                                0000            012466789999999999999999999 


Q ss_pred             hhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435          476 GNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL  519 (565)
Q Consensus       476 a~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l  519 (565)
                      +...+|+++....       .+|..+         +++++++++++|++..++
T Consensus       198 al~~~p~~~~~~~-------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  243 (323)
T d1fcha_         198 ALSVRPNDYLLWN-------KLGATLANGNQSEEAVAAYRRALELQPGYIRSR  243 (323)
T ss_dssp             HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccccccccccchh-------hhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence            6668888875432       444444         899999999999987755

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=7.2e-12  Score=125.99  Aligned_cols=149  Identities=9%  Similarity=0.010  Sum_probs=119.8

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCC-CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG  437 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g-~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~  437 (565)
                      .+.+...|.+...+..+|..+...| ++++|+..++++++.+|++..+|+.+|.++...|++++|++.|++++++     
T Consensus        67 ~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~-----  141 (315)
T d2h6fa1          67 RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-----  141 (315)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----
T ss_pred             HHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh-----
Confidence            4455666777889999999988876 5899999999999999999999999999999999999999999999765     


Q ss_pred             CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH------HH--HHHHHHHH
Q 008435          438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR------YV--ANITFLIF  509 (565)
Q Consensus       438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~------~l--~~~l~~Al  509 (565)
                      +|++.       .++.++|.++...|++++|++.+++ +..++|.+...+.+....+..++.      ..  ++.+++++
T Consensus       142 dp~n~-------~a~~~~~~~~~~~~~~~~Al~~~~~-al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al  213 (315)
T d2h6fa1         142 DAKNY-------HAWQHRQWVIQEFKLWDNELQYVDQ-LLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI  213 (315)
T ss_dssp             CTTCH-------HHHHHHHHHHHHHTCCTTHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred             hhcch-------HHHHHHHHHHHHHHhhHHHHHHHHH-HHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHH
Confidence            46654       5788899999999999999999999 677999988653321111111110      11  67889999


Q ss_pred             hcCCCcHHHHH
Q 008435          510 ATSPSIINLLT  520 (565)
Q Consensus       510 ~l~P~~~~~l~  520 (565)
                      +++|++..++.
T Consensus       214 ~~~P~~~~~~~  224 (315)
T d2h6fa1         214 KLVPHNESAWN  224 (315)
T ss_dssp             HHSTTCHHHHH
T ss_pred             HhCCCchHHHH
Confidence            99999877653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.9e-12  Score=109.29  Aligned_cols=107  Identities=17%  Similarity=0.161  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +..+-++|..+...|++++|+.+|+++|+++|+++.++..+|.+|.+.|++++|++.|++|+++.     |.+.......
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-----~~~~~~~~~~   78 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-----RENREDYRQI   78 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHSTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-----cccHHHHHHH
Confidence            44566899999999999999999999999999999999999999999999999999999998764     4333222333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      ..++..+|.++...+++++|+++|++ +...++
T Consensus        79 a~~~~~lg~~~~~~~~~~~A~~~~~k-al~~~~  110 (128)
T d1elra_          79 AKAYARIGNSYFKEEKYKDAIHFYNK-SLAEHR  110 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHH-HHhcCC
Confidence            45788899999999999999999999 444443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.6e-11  Score=112.19  Aligned_cols=131  Identities=14%  Similarity=0.041  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +..++..|..+...|++++|+..|++   .+|.++.+|+++|.+|...|++++|+++|++|+++     +|+++      
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-----dp~~~------   70 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHLA------   70 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH-----hhhhh------
Confidence            45678899999999999999999986   46778999999999999999999999999999875     46544      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhh---------hhhhhHHHHHHHHH---------HHHHHHHHh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK---------AHYYDGLVVLARYV---------ANITFLIFA  510 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~---------~~~~~~~~~La~~l---------~~~l~~Al~  510 (565)
                       .+++++|.++.++|++++|++.|++ +....+.++...         ....+.+..+|..+         .+.+++++.
T Consensus        71 -~a~~~~g~~~~~~g~~~~A~~~~~k-Al~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          71 -VAYFQRGMLYYQTEKYDLAIKDLKE-ALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -hhHHHHHHHHHhhccHHHHHHHHHH-HHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence             5788999999999999999999999 444444443211         00123344566554         788899999


Q ss_pred             cCCCc
Q 008435          511 TSPSI  515 (565)
Q Consensus       511 l~P~~  515 (565)
                      ++|+.
T Consensus       149 ~~~~~  153 (192)
T d1hh8a_         149 MKSEP  153 (192)
T ss_dssp             TCCSG
T ss_pred             cCCCc
Confidence            88863

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.1e-10  Score=106.60  Aligned_cols=107  Identities=10%  Similarity=0.108  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAISKL  433 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---------------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~  433 (565)
                      +..+.+.|..++..|++++|+..|++||+..|.+               ..++.++|.+|...|++++|+.++++||++ 
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-   91 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-   91 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc-
Confidence            4455678889999999999999999999998865               367888999999999999999999999765 


Q ss_pred             hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       434 ~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                          +|+++       .+++.+|.++..+|++++|+..|++ +..++|+++....
T Consensus        92 ----~p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~-al~l~P~n~~~~~  134 (170)
T d1p5qa1          92 ----DSNNE-------KGLSRRGEAHLAVNDFELARADFQK-VLQLYPNNKAAKT  134 (170)
T ss_dssp             ----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSSCHHHHH
T ss_pred             ----cccch-------hhhHHHHHHHHHhhhHHHHHHHHHH-HHHhCCCCHHHHH
Confidence                46654       5788999999999999999999999 6779999886543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.3e-11  Score=110.02  Aligned_cols=114  Identities=11%  Similarity=0.106  Sum_probs=93.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC-Chhh--
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT-EPEA--  444 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~-~~~~--  444 (565)
                      ++..++.+|..+...|++++|+..|++|+++||+++.+|+.+|.++.+.|++++|++.|++|++..  ..++. +...  
T Consensus        35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~--~~n~~~~~~~~~  112 (192)
T d1hh8a_          35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL--RGNQLIDYKILG  112 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCSEEECGGGT
T ss_pred             CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhC--ccCchHHHHHhh
Confidence            577899999999999999999999999999999999999999999999999999999999997642  11111 0000  


Q ss_pred             ---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          445 ---IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       445 ---~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                         ......+++++|.++..+|++++|++.+++ +..+.|+..
T Consensus       113 ~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~-A~~~~~~~~  154 (192)
T d1hh8a_         113 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL-ATSMKSEPR  154 (192)
T ss_dssp             BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCCSGG
T ss_pred             hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCcc
Confidence               001124678899999999999999999999 666666643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.9e-11  Score=103.95  Aligned_cols=102  Identities=12%  Similarity=0.049  Sum_probs=85.2

Q ss_pred             HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435          374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV  450 (565)
Q Consensus       374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~  450 (565)
                      .++..+...+++++|++.|++++..+|+++++++++|.++...+   ++++|+..|+++++.     +|.     +....
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-----~~~-----~~~~~   73 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GSK-----EEQRD   73 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SCH-----HHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-----cCC-----chHHH
Confidence            35567788899999999999999999999999999999998755   456799999999542     221     22235


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      +++++|.+|.+.|++++|+++|++ +...+|++..+
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~-aL~~~P~~~~A  108 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRG-LLQTEPQNNQA  108 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHH-HHHhCcCCHHH
Confidence            788999999999999999999999 66799998864

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.13  E-value=9.3e-11  Score=104.44  Aligned_cols=117  Identities=15%  Similarity=0.031  Sum_probs=84.8

Q ss_pred             HHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK----------GLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       379 l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~----------g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      +.+.+.+++|+..|++|+++||+++++++.+|.++...          +++++|+++|++|+++     +|+++      
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-----~P~~~------   75 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKD------   75 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH------
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-----cchhh------
Confidence            34556789999999999999999999999999999854          4558999999999765     57655      


Q ss_pred             HHHHHHHHHHHHHcCC----HHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHHHHHHHHHHhcCCCcHHHHHhhhh
Q 008435          449 IVASQWSGVACIRQEK----WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSPSIINLLTVSNI  524 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~----~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l~~~l~~Al~l~P~~~~~l~~~~~  524 (565)
                       .+++++|.+|..+|+    ..++...|++ +                         .++|+++++++|++..++...+.
T Consensus        76 -~a~~~lG~~y~~~g~~~~~~~~~~~~~~~-A-------------------------~~~~~kal~l~P~~~~~~~~L~~  128 (145)
T d1zu2a1          76 -EAVWCIGNAYTSFAFLTPDETEAKHNFDL-A-------------------------TQFFQQAVDEQPDNTHYLKSLEM  128 (145)
T ss_dssp             -HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-H-------------------------HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -HHHhhHHHHHHHcccchhhHHHHHHhHHH-h-------------------------hhhhhcccccCCCHHHHHHHHHH
Confidence             478889999987654    3333333333 1                         34567777777777777766655


Q ss_pred             hhHHHhhhh
Q 008435          525 IDIIYVNCY  533 (565)
Q Consensus       525 ~~~~~~~~~  533 (565)
                      .....+.+.
T Consensus       129 ~~ka~~~~~  137 (145)
T d1zu2a1         129 TAKAPQLHA  137 (145)
T ss_dssp             HHTHHHHHH
T ss_pred             HHHHHHHHH
Confidence            544433333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=3.8e-10  Score=107.64  Aligned_cols=121  Identities=12%  Similarity=0.052  Sum_probs=95.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---------
Q 008435          363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL---------  433 (565)
Q Consensus       363 ~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~---------  433 (565)
                      ...+.+++.++.+|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|++.|+++++..         
T Consensus        65 ~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  144 (259)
T d1xnfa_          65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW  144 (259)
T ss_dssp             HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHH
Confidence            33445788999999999999999999999999999999999999999999999999999999999998762         


Q ss_pred             --------------------hhcCCCCChh-----------------------------hhhHHHHHHHHHHHHHHHcCC
Q 008435          434 --------------------FLAGHPTEPE-----------------------------AIDLLIVASQWSGVACIRQEK  464 (565)
Q Consensus       434 --------------------~l~~~P~~~~-----------------------------~~~~~~~a~~~lG~a~~~~g~  464 (565)
                                          ....++....                             ..+....+++++|.++..+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~  224 (259)
T d1xnfa_         145 LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD  224 (259)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC
Confidence                                0001110000                             001112366778999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCc
Q 008435          465 WEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       465 ~~eAi~~leraa~~l~P~~~  484 (565)
                      +++|+++|++ +...+|++-
T Consensus       225 ~~~A~~~~~~-al~~~p~~~  243 (259)
T d1xnfa_         225 LDSATALFKL-AVANNVHNF  243 (259)
T ss_dssp             HHHHHHHHHH-HHTTCCTTC
T ss_pred             HHHHHHHHHH-HHHcCCCCH
Confidence            9999999999 666777764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.11  E-value=4.8e-10  Score=100.37  Aligned_cols=107  Identities=14%  Similarity=0.071  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----------------INALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----------------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      +..+.+.|..++..|++++|+..|++|+...+..                ...+.++|.+|.+.|++++|+++|++|+++
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            3456778999999999999999999999876643                246788999999999999999999999765


Q ss_pred             hhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435          433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA  488 (565)
Q Consensus       433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~  488 (565)
                           +|.+.       .+++++|.++..+|++++|+..|++ +..++|+++....
T Consensus        97 -----~p~~~-------ka~~~~g~~~~~lg~~~~A~~~~~~-al~l~P~n~~~~~  139 (153)
T d2fbna1          97 -----DKNNV-------KALYKLGVANMYFGFLEEAKENLYK-AASLNPNNLDIRN  139 (153)
T ss_dssp             -----STTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSTTCHHHHH
T ss_pred             -----cchhh-------hhhHHhHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHH
Confidence                 46554       5799999999999999999999999 7779999986543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.09  E-value=9.1e-10  Score=99.93  Aligned_cols=106  Identities=11%  Similarity=0.088  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD---------------NINALILMGQTQLQKGLLEEAVEYLECAISKL  433 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~---------------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~  433 (565)
                      ++.+.+.|..++..|++++|+..|++|+...+.               ...++.++|.+|...|++++|++++++++++ 
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence            456778899999999999999999999975544               2356788999999999999999999999765 


Q ss_pred             hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhh
Q 008435          434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK  487 (565)
Q Consensus       434 ~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~  487 (565)
                          +|++.       .+++++|.++..+|++++|++.|++ +..++|+++...
T Consensus        94 ----~p~~~-------~a~~~~~~~~~~l~~~~~A~~~~~~-al~l~P~n~~~~  135 (168)
T d1kt1a1          94 ----DSANE-------KGLYRRGEAQLLMNEFESAKGDFEK-VLEVNPQNKAAR  135 (168)
T ss_dssp             ----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHSCTTCHHHH
T ss_pred             ----ccchH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHH
Confidence                46544       5788899999999999999999999 677899987653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.05  E-value=4.8e-10  Score=101.71  Aligned_cols=106  Identities=16%  Similarity=0.234  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALN----------------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~----------------~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      ++.+...|..+...|++++|+..|++||+                .+|.++.++..+|.++.+.|++++|+..|++|++ 
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~-  105 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-  105 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh-
Confidence            34566788899999999999999999985                4678888999999999999999999999999965 


Q ss_pred             hhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhh
Q 008435          433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK  487 (565)
Q Consensus       433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~  487 (565)
                          .+|+++       .+++++|.++..+|++++|++.|++ +..++|+++...
T Consensus       106 ----~~p~~~-------~a~~~~g~~~~~l~~~~~A~~~~~~-al~l~p~n~~~~  148 (169)
T d1ihga1         106 ----IDPSNT-------KALYRRAQGWQGLKEYDQALADLKK-AQEIAPEDKAIQ  148 (169)
T ss_dssp             ----TCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHH
T ss_pred             ----hhhhhh-------hHHHhHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHHH
Confidence                456654       5789999999999999999999999 667899987643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.05  E-value=4.9e-10  Score=100.40  Aligned_cols=114  Identities=11%  Similarity=0.011  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------------INALILMGQTQLQKGLLEEAVEYLECAISKLFLA  436 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~  436 (565)
                      +..++..|..++..|++++|+..|++||+++|+.            +.+|.++|.+|...|++++|++.+++++++..-.
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            3455667889999999999999999999999875            4689999999999999999999999998763100


Q ss_pred             CCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       437 ~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      .. .+.........+++++|.+|..+|++++|++.|++ +..+.|+..
T Consensus        89 ~~-~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~-Al~l~~~~~  134 (156)
T d2hr2a1          89 GE-LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK-VVEMIEERK  134 (156)
T ss_dssp             CC-TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHCC
T ss_pred             cc-ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHhhHHhh
Confidence            11 11112233345788999999999999999999999 555555443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.9e-09  Score=91.90  Aligned_cols=108  Identities=15%  Similarity=0.090  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435          405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP  484 (565)
Q Consensus       405 A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~  484 (565)
                      -+...|..+...|++++|++.|+++|+.     +|.++       .++.++|.++..+|++++|+..+++ +..++|+++
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~-----~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~-al~~~p~~~   71 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNH-------VLYSNRSAAYAKKGDYQKAYEDGCK-TVDLKPDWG   71 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcch-------hhhhcccccccccccccccchhhhh-HHHhccchh
Confidence            3567899999999999999999999875     46654       4688899999999999999999999 667899998


Q ss_pred             hhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435          485 KSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNII  525 (565)
Q Consensus       485 ~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~  525 (565)
                      ........++..++..-  +.+++++++++|+...++...++.
T Consensus        72 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          72 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            65332222222222222  899999999999999988776654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=9.4e-10  Score=90.46  Aligned_cols=81  Identities=16%  Similarity=0.126  Sum_probs=70.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN-------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP  439 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~-------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P  439 (565)
                      +++++++++|..+.+.|++++|+..|++|++++|++       +.++..+|.++.+.|++++|+++|++|+++     +|
T Consensus         3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----~P   77 (95)
T d1tjca_           3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DP   77 (95)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----Cc
Confidence            689999999999999999999999999999987665       789999999999999999999999999765     57


Q ss_pred             CChhhhhHHHHHHHHHHHHH
Q 008435          440 TEPEAIDLLIVASQWSGVAC  459 (565)
Q Consensus       440 ~~~~~~~~~~~a~~~lG~a~  459 (565)
                      +++       .++.+++...
T Consensus        78 ~~~-------~a~~Nl~~~~   90 (95)
T d1tjca_          78 EHQ-------RANGNLKYFE   90 (95)
T ss_dssp             TCH-------HHHHHHHHHH
T ss_pred             CCH-------HHHHHHHHHH
Confidence            655       3455555544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.94  E-value=1e-08  Score=92.83  Aligned_cols=139  Identities=9%  Similarity=0.046  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh-h----hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP-E----AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~-~----~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      +..+...|..++..|++++|+.+|++|+...  ...+... .    ........+.++|.||..+|++++|+..+++ +.
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~-al   91 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK-AL   91 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhh-hh
Confidence            4567889999999999999999999998763  2222111 0    1112223577899999999999999999999 66


Q ss_pred             ccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhhhhhhhhhh
Q 008435          478 LKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCF  544 (565)
Q Consensus       478 ~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  544 (565)
                      .++|++.........++..++..-  +++|+++++++|++..+..........+....+..++.|.+-|
T Consensus        92 ~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          92 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            789998865332222222222222  8999999999999999988877776666666666666666554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=9.7e-09  Score=93.27  Aligned_cols=136  Identities=11%  Similarity=0.066  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC--Chhh---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT--EPEA---IDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~--~~~~---~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      +..+...|..++..|++++|+++|++|++..  ...+.  +.+.   ......++.++|.||.++|++++|+.++++ +.
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~-al   89 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK-AL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhh-hh
Confidence            5566789999999999999999999998763  11111  1110   112223577899999999999999999999 77


Q ss_pred             ccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhhhhhhh
Q 008435          478 LKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFA  541 (565)
Q Consensus       478 ~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (565)
                      .++|+++........++..++...  +++|+++++++|++..+..................++.|.
T Consensus        90 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~  155 (170)
T d1p5qa1          90 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA  155 (170)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789998865332222222222222  8999999999999998887776655544444333333333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=7.2e-09  Score=89.58  Aligned_cols=106  Identities=9%  Similarity=0.021  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435          403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE  482 (565)
Q Consensus       403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~  482 (565)
                      +..+-.+|..++..|+|++|+++|++++++     +|+++       .++.++|.+|..+|++++|++.+++ +..++|+
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~-----~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~-al~l~~~   70 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNM-------TYITNQAAVYFEKGDYNKCRELCEK-AIEVGRE   70 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH-------HHHHhHHHHHHHcCchHHHHHHHHH-HHHhCcc
Confidence            456778999999999999999999999775     46544       4688899999999999999999999 6668888


Q ss_pred             CchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhh
Q 008435          483 EPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVS  522 (565)
Q Consensus       483 ~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~  522 (565)
                      ++..+..+..++..+|..+         ++++++++..+|+. +.+..+
T Consensus        71 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~-~~~~~l  118 (128)
T d1elra_          71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DVLKKC  118 (128)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-HHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHH
Confidence            8766555556677777766         78888888887753 344443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=8.7e-09  Score=92.07  Aligned_cols=108  Identities=12%  Similarity=0.076  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435          404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE  483 (565)
Q Consensus       404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~  483 (565)
                      +.+...|..+++.|+|++|+++|++|+++     +|+++       .++.++|.++...|++++|+..|++ +..++|++
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~k-al~~~p~~   77 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNA-------IYYGNRSLAYLRTECYGYALGDATR-AIELDKKY   77 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhcccc-----chhhh-------hhhhhhHHHHHhccccchHHHHHHH-HHHHcccc
Confidence            34567899999999999999999999775     46554       4688899999999999999999999 67789998


Q ss_pred             chhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhh
Q 008435          484 PKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNI  524 (565)
Q Consensus       484 ~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~  524 (565)
                      .........++..++...  .+++++++.++|+...+....++
T Consensus        78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~  120 (159)
T d1a17a_          78 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  120 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            865432222222222222  88999999999998887655443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=6.9e-09  Score=94.95  Aligned_cols=101  Identities=13%  Similarity=0.088  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435          401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE  480 (565)
Q Consensus       401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~  480 (565)
                      .+++.+...|..++..|++++|+++|++|+++     +|.++       .++.++|.+|...|++++|+..|++ +..++
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-----~p~~~-------~~~~~lg~~y~~~~~~~~Ai~~~~~-al~l~   68 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVA-------VYYTNRALCYLKMQQPEQALADCRR-ALELD   68 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HTTSC
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHhHHHHHhhhhhhhhhhHHHHH-HHHhC
Confidence            35777889999999999999999999999775     57654       4688899999999999999999999 77799


Q ss_pred             CCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435          481 PEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPS  514 (565)
Q Consensus       481 P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~  514 (565)
                      |+++..+.....++..++...  ++++++++.++|+
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            998865332222222222222  7899999998885

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.3e-08  Score=83.45  Aligned_cols=79  Identities=10%  Similarity=0.101  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      +++-++.+|.++.+.|++++|+++|++|+++.  ..++.   .......++.++|.++.++|++++|+++|++ +..++|
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~--~~~~~---~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~-aL~l~P   77 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQL--DEGEI---STIDKVSVLDYLSYAVYQQGDLDKALLLTKK-LLELDP   77 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTTCC---CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCT
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--hhhhc---cCccHHHHHHHHhhHHHhcCChHHHHHHHHH-HHHhCc
Confidence            45678999999999999999999999998764  22221   1111235788899999999999999999999 777999


Q ss_pred             CCchh
Q 008435          482 EEPKS  486 (565)
Q Consensus       482 ~~~~~  486 (565)
                      +++..
T Consensus        78 ~~~~a   82 (95)
T d1tjca_          78 EHQRA   82 (95)
T ss_dssp             TCHHH
T ss_pred             CCHHH
Confidence            99864

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=2.6e-08  Score=97.70  Aligned_cols=142  Identities=11%  Similarity=-0.045  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQ-KGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~-~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      +..+...|..+.+.|++++|+.++++++++.+++      ..++..+|.++.. .|++++|+++|++|+++.....    
T Consensus        77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~----  152 (290)
T d1qqea_          77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ----  152 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC----
Confidence            4567888999999999999999999999987766      7889999998865 5999999999999987631010    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcC
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATS  512 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~  512 (565)
                        .......++..+|.++..+|+|++|++.|++ +....+.++.........+...+.++         .+.++++.+.+
T Consensus       153 --~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~  229 (290)
T d1qqea_         153 --SVALSNKCFIKCADLKALDGQYIEASDIYSK-LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (290)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             --chhhhhhHHHHHHHHHHHcChHHHHHHHHHH-HHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence              1122234678899999999999999999999 55566666532211111122223222         67888889999


Q ss_pred             CCcHH
Q 008435          513 PSIIN  517 (565)
Q Consensus       513 P~~~~  517 (565)
                      |.+..
T Consensus       230 ~~~~~  234 (290)
T d1qqea_         230 PNFAD  234 (290)
T ss_dssp             -----
T ss_pred             CCccc
Confidence            87654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=2.2e-08  Score=97.33  Aligned_cols=107  Identities=13%  Similarity=0.088  Sum_probs=87.8

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN-----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~-----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      .+++.++.....|..+...|++++|+.+++++++.+|++     ..++..+|.++...|++++|+++|+++++..     
T Consensus         7 ~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~-----   81 (366)
T d1hz4a_           7 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-----   81 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----
T ss_pred             ccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Confidence            334456777888999999999999999999999999987     5689999999999999999999999998763     


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                      +... +......++..++.++...|++++|.+.++++.
T Consensus        82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al  118 (366)
T d1hz4a_          82 RQHD-VWHYALWSLIQQSEILFAQGFLQTAWETQEKAF  118 (366)
T ss_dssp             HHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             Hhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 112223467789999999999999999999843

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.72  E-value=6e-08  Score=87.38  Aligned_cols=121  Identities=11%  Similarity=0.047  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC-CCC---hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435          406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGH-PTE---PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP  481 (565)
Q Consensus       406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~-P~~---~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P  481 (565)
                      +...|..+...|++++|++.|++|++....... ..+   ....+.....+.++|.++.++|++++|+..+++ +..++|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~-al~~~p  108 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE-ALEIDP  108 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhh-hhhhhh
Confidence            457899999999999999999999876300000 000   001122334678899999999999999999999 777999


Q ss_pred             CCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhH
Q 008435          482 EEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDI  527 (565)
Q Consensus       482 ~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~  527 (565)
                      .++........++..++..-  ++.|+++++++|+...+.........
T Consensus       109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1         109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            98865432222222222222  89999999999999888766655433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.66  E-value=1.1e-07  Score=79.83  Aligned_cols=72  Identities=22%  Similarity=0.211  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435          404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE  483 (565)
Q Consensus       404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~  483 (565)
                      +.++.+|..+.+.|++++|+.+|+++++.     +|+++       .++.++|.++.+.|++++|+.+|++ +..++|++
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~a~~~lg~~~~~~~~~~~A~~~~~~-al~~~p~~   83 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQK-----EPERE-------EAWRSLGLTQAENEKDGLAIIALNH-ARMLDPKD   83 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhccc-----ccccc-------hhhhhhhhhhhhhhhHHHhhccccc-cccccccc
Confidence            34688999999999999999999999765     46544       5788899999999999999999999 77799998


Q ss_pred             chhhh
Q 008435          484 PKSKA  488 (565)
Q Consensus       484 ~~~~~  488 (565)
                      +....
T Consensus        84 ~~a~~   88 (112)
T d1hxia_          84 IAVHA   88 (112)
T ss_dssp             HHHHH
T ss_pred             ccchH
Confidence            86543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.66  E-value=2.2e-07  Score=82.47  Aligned_cols=118  Identities=8%  Similarity=0.038  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC-hhh-----hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435          404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE-PEA-----IDLLIVASQWSGVACIRQEKWEEGIAHLERIGN  477 (565)
Q Consensus       404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~-~~~-----~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~  477 (565)
                      .-+...|..++..|+|++|+..|++|++..  ...+.. ...     .......+.++|.+|.++|++++|++++++ +.
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~-al   94 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK-VL   94 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc-cc
Confidence            345678899999999999999999998753  111111 100     111123577899999999999999999999 66


Q ss_pred             ccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhh
Q 008435          478 LKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNI  524 (565)
Q Consensus       478 ~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~  524 (565)
                      ..+|.+.........++..++...  ..+|+++++++|++.++......
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~  143 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  143 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            789998865333322333333222  89999999999999888766543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=1.6e-07  Score=93.32  Aligned_cols=93  Identities=10%  Similarity=-0.078  Sum_probs=69.1

Q ss_pred             CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008435          382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL--LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC  459 (565)
Q Consensus       382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~--~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~  459 (565)
                      .|++++|+.+++++++.+|++..+|+.+|.++...++  +++|+..++++++.     +|++..      ..+...|.++
T Consensus        86 ~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~~~------~~~~~~~~~~  154 (334)
T d1dcea1          86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFH------CWDYRRFVAA  154 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-----CTTCHH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh-----Cchhhh------hhhhHHHHHH
Confidence            4456788888888888888888888888888877764  78888888888664     344321      1134567788


Q ss_pred             HHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          460 IRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       460 ~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      ...|++++|++.+++ +...+|.+...
T Consensus       155 ~~~~~~~~Al~~~~~-~i~~~p~~~~a  180 (334)
T d1dcea1         155 QAAVAPAEELAFTDS-LITRNFSNYSS  180 (334)
T ss_dssp             HTCCCHHHHHHHHHT-TTTTTCCCHHH
T ss_pred             HhccccHHHHHHHHH-HHHcCCCCHHH
Confidence            888888888888888 66778887754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=8e-08  Score=94.12  Aligned_cols=139  Identities=13%  Similarity=0.002  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKE------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP  442 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d------P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~  442 (565)
                      ++.+...|..+...|++++|+.+|++|++..      ++.+.+|..+|.+|.+.|++++|+++|++++++..-.+     
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~-----  111 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-----  111 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc-----
Confidence            3557778888889999999999999999973      44578999999999999999999999999988641111     


Q ss_pred             hhhhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcC
Q 008435          443 EAIDLLIVASQWSGVACIR-QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATS  512 (565)
Q Consensus       443 ~~~~~~~~a~~~lG~a~~~-~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~  512 (565)
                       .......++..+|.++.. .|++++|+++|++++. +.+.+.. .......+..+|..+         .+.+++++..+
T Consensus       112 -~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~-l~~~~~~-~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~  188 (290)
T d1qqea_         112 -QFRRGANFKFELGEILENDLHDYAKAIDCYELAGE-WYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (290)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             -cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH-HHHhcCc-hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence             111223467778888865 6999999999999543 3322221 112234455666665         78899999988


Q ss_pred             CCc
Q 008435          513 PSI  515 (565)
Q Consensus       513 P~~  515 (565)
                      |..
T Consensus       189 ~~~  191 (290)
T d1qqea_         189 MGN  191 (290)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.59  E-value=3.6e-07  Score=83.63  Aligned_cols=95  Identities=15%  Similarity=0.078  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH----------------------HHHHHHHHHHHHcCCHHHHHHHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----------------------NALILMGQTQLQKGLLEEAVEYL  426 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a----------------------~A~~~LG~~~~~~g~~~eA~~~~  426 (565)
                      .+.++..|..+...|++++|+..|++|+++.+++.                      .++..+|.++...|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            46778899999999999999999999999987653                      68899999999999999999999


Q ss_pred             HHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435          427 ECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI  475 (565)
Q Consensus       427 ~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera  475 (565)
                      +++++.     +|.+.       .+|..++.++...|++++|+..|+++
T Consensus        91 ~~al~~-----~P~~e-------~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          91 EALTFE-----HPYRE-------PLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHH-----STTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHh-----CCccH-------HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999765     46543       46888999999999999999999994

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=3.2e-07  Score=91.02  Aligned_cols=183  Identities=8%  Similarity=-0.068  Sum_probs=103.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCC--CCchHHHHHHHHhhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          365 ENLTPKELIALSVKFLSKGD--KERPIPLLQLALNKEPDNINAL-ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       365 ~~~~~~~l~~lA~~l~~~g~--~~eAi~~l~~AL~~dP~~a~A~-~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      .+.+...++.+|..+...++  +++|+..++++++.||++..++ +..|.++...|++++|+++++++++     .+|.+
T Consensus       103 ~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~-----~~p~~  177 (334)
T d1dcea1         103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-----RNFSN  177 (334)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-----TTCCC
T ss_pred             CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH-----cCCCC
Confidence            34456667777777666554  5678888888888888888775 4567777778888888888888854     34554


Q ss_pred             hhhhhHHHHHHHHHHHHHHHcCCHH------------------------------HHHHHHHHHhhccCCCCchhhhhhh
Q 008435          442 PEAIDLLIVASQWSGVACIRQEKWE------------------------------EGIAHLERIGNLKEPEEPKSKAHYY  491 (565)
Q Consensus       442 ~~~~~~~~~a~~~lG~a~~~~g~~~------------------------------eAi~~leraa~~l~P~~~~~~~~~~  491 (565)
                      .       .++.++|.++...|+++                              +|...+.+ +...+|.+........
T Consensus       178 ~-------~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~-~l~~~~~~~~~~~~l~  249 (334)
T d1dcea1         178 Y-------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR-WLLGRAEPLFRCELSV  249 (334)
T ss_dssp             H-------HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH-HHHSCCCCSSSCCCCH
T ss_pred             H-------HHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHH-HHHhCcchhhHHHHHH
Confidence            3       34555666666655554                              34444444 2334444443222221


Q ss_pred             hHHHHHHHHH--HHHHHHHHhcCCCcHHHH-------HhhhhhhHHHh---hhhhhhhhhhhhhhccchhHHHHHHHHHh
Q 008435          492 DGLVVLARYV--ANITFLIFATSPSIINLL-------TVSNIIDIIYV---NCYELKKKRFASCFFGFSVLYVMLVAMLK  559 (565)
Q Consensus       492 ~~~~~La~~l--~~~l~~Al~l~P~~~~~l-------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (565)
                      ..+..++...  .+.+.++++.+|+...++       ...++.+++.+   .+.+..+. ..+.|.+|+-.+.+--...|
T Consensus       250 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~~e~~~~~  328 (334)
T d1dcea1         250 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFLLENSVLK  328 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHhHhhHHHH
Confidence            1222222222  667777777777655443       22333333332   33333333 45677777777765554444


Q ss_pred             hh
Q 008435          560 LR  561 (565)
Q Consensus       560 ~~  561 (565)
                      ++
T Consensus       329 ~~  330 (334)
T d1dcea1         329 ME  330 (334)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.54  E-value=3.6e-08  Score=87.17  Aligned_cols=97  Identities=13%  Similarity=0.146  Sum_probs=73.1

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHC----------CCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------
Q 008435          359 QLKISVENLTPKELIALSVKFLSK----------GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL----------  418 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~----------g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~----------  418 (565)
                      ...+..+|.+++.++.+|..+...          +++++|+..|++|+++||+++.+|+.+|.+|...|+          
T Consensus        21 e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~  100 (145)
T d1zu2a1          21 ENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKH  100 (145)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHH
Confidence            345556677899999999998754          445789999999999999999999999999987753          


Q ss_pred             -HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHH
Q 008435          419 -LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEE  467 (565)
Q Consensus       419 -~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~e  467 (565)
                       +++|+++|++|+++     +|++.       .++..++.+....+.+.|
T Consensus       101 ~~~~A~~~~~kal~l-----~P~~~-------~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1         101 NFDLATQFFQQAVDE-----QPDNT-------HYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHTHHHHHHH
T ss_pred             hHHHhhhhhhccccc-----CCCHH-------HHHHHHHHHHHHHHHHHH
Confidence             68899999999765     46544       234456666544333333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=8.6e-08  Score=101.64  Aligned_cols=103  Identities=10%  Similarity=-0.004  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435          369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL  448 (565)
Q Consensus       369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~  448 (565)
                      ...+..+|..+...|+.++|+..+++++..+|.  ++++.+|.++...|++++|+.+|++|+++     +|++.      
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-----~P~~~------  186 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQL-----VPSNG------  186 (497)
T ss_dssp             -----------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTBS------
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCch------
Confidence            444566777777788888888888888877764  57777888888888888888888888654     45544      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                       .+|+++|.++...|++.+|+.+|.| +...+|.++.+
T Consensus       187 -~~~~~Lg~~~~~~~~~~~A~~~y~r-al~~~~~~~~a  222 (497)
T d1ya0a1         187 -QPYNQLAILASSKGDHLTTIFYYCR-SIAVKFPFPAA  222 (497)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHH-HHSSSBCCHHH
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHH-HHhCCCCCHHH
Confidence             3567788888888888888888888 55566555543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.47  E-value=3.9e-08  Score=95.99  Aligned_cols=126  Identities=15%  Similarity=0.038  Sum_probs=89.3

Q ss_pred             HHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHH
Q 008435          376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS  455 (565)
Q Consensus       376 A~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~l  455 (565)
                      +..+++.|++++|+..++++++.+|+|+.++..+|.++...|++++|++.|++++++     +|++.       .++..+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l-----~P~~~-------~~~~~l   70 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYL-------PGASQL   70 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGH-------HHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCcH-------HHHHHH
Confidence            456788999999999999999999999999999999999999999999999999765     34322       345556


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHH
Q 008435          456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLT  520 (565)
Q Consensus       456 G~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~  520 (565)
                      +.++...++.+++...+.+....   .++.....+    ...+...         .+.++++.+..|+....+.
T Consensus        71 ~~ll~a~~~~~~a~~~~~~~~~~---~~p~~~~~~----l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          71 RHLVKAAQARKDFAQGAATAKVL---GENEELTKS----LVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             HHHHHHHHHHHHHTTSCCCEECC---CSCHHHHHH----HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHHHHhccccHHHHHHhhhhhcc---cCchHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            77777777777766655542222   222221111    1112111         6778888888887655443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=7.9e-08  Score=101.96  Aligned_cols=135  Identities=7%  Similarity=-0.142  Sum_probs=76.6

Q ss_pred             HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHH
Q 008435          375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW  454 (565)
Q Consensus       375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~  454 (565)
                      ++......+.|++|+..+++++..+|++..++..+|.++...|++++|+..+++++...           +   ..++.+
T Consensus        92 ~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------~---~~~~~~  157 (497)
T d1ya0a1          92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-----------C---QHCLVH  157 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH-----------H---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-----------H---HHHHHH
Confidence            34445556778899999999999999999999999999999999999999999997542           1   246778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhh
Q 008435          455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNI  524 (565)
Q Consensus       455 lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~  524 (565)
                      +|.++...|++++|+.+|++ +..++|+++....+....+...+...  +.+|.+++..+|.+..++.+..+
T Consensus       158 LG~l~~~~~~~~~A~~~y~~-A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~  228 (497)
T d1ya0a1         158 LGDIARYRNQTSQAESYYRH-AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK  228 (497)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-HHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHH-HHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            99999999999999999999 77799999865432211111122222  89999999999999888776643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=7.5e-08  Score=82.69  Aligned_cols=81  Identities=14%  Similarity=0.177  Sum_probs=69.2

Q ss_pred             hhhhcCCCCCCCHHHHHHHHHHHHHCC---CCCchHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435          357 AKQLKISVENLTPKELIALSVKFLSKG---DKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECAIS  431 (565)
Q Consensus       357 ~~~~~~~~~~~~~~~l~~lA~~l~~~g---~~~eAi~~l~~AL~~dP~~--a~A~~~LG~~~~~~g~~~eA~~~~~rAl~  431 (565)
                      .|.+.+...+.+++.++.+|..+...+   ++++|+..|+++++.+|++  +++++.+|.+|.+.|++++|+++|+++++
T Consensus        21 ~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          21 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            456677777889999999999998754   4557999999999999876  56999999999999999999999999976


Q ss_pred             hhhhcCCCCCh
Q 008435          432 KLFLAGHPTEP  442 (565)
Q Consensus       432 l~~l~~~P~~~  442 (565)
                      +     +|++.
T Consensus       101 ~-----~P~~~  106 (122)
T d1nzna_         101 T-----EPQNN  106 (122)
T ss_dssp             H-----CTTCH
T ss_pred             h-----CcCCH
Confidence            5     57765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.36  E-value=6.8e-07  Score=79.26  Aligned_cols=109  Identities=12%  Similarity=0.056  Sum_probs=71.4

Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh--hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 008435          403 INALILM--GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL  478 (565)
Q Consensus       403 a~A~~~L--G~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~--~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~  478 (565)
                      +.++..+  |..++..|+|++|++.|++|+++.  ...|+..  ........++.++|.+|..+|++++|++.+++ +..
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~--~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~-al~   83 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK-ALH   83 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--hhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhh-hhh
Confidence            4566655  778889999999999999998864  1122111  01112234688999999999999999999999 443


Q ss_pred             cCCC----CchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCC
Q 008435          479 KEPE----EPKSKAHYYDGLVVLARYV---------ANITFLIFATSPS  514 (565)
Q Consensus       479 l~P~----~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~  514 (565)
                      +.|+    ++.....+..++..+|.++         ++.|++++++.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          84 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3322    1111222334555666665         5677777766553

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=4.2e-06  Score=82.07  Aligned_cols=147  Identities=11%  Similarity=-0.072  Sum_probs=105.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435          367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI  445 (565)
Q Consensus       367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~-a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~  445 (565)
                      .+...++..+......|+.++|...|+++++.+|.+ ..+|...+....+.|++++|.+.|+++++.     .|...   
T Consensus        97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~-----~~~~~---  168 (308)
T d2onda1          97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----ARTRH---  168 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TTCCT---
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCcH---
Confidence            355667778888889999999999999999999977 458999999999999999999999999643     34433   


Q ss_pred             hHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCC----cHHH
Q 008435          446 DLLIVASQWSGVAC-IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPS----IINL  518 (565)
Q Consensus       446 ~~~~~a~~~lG~a~-~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~----~~~~  518 (565)
                          ..+...+... ...|+.+.|...|++ +...+|+++..+..|.+.....+..-  +..|++++...|.    ...+
T Consensus       169 ----~~~~~~a~~e~~~~~~~~~a~~i~e~-~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~i  243 (308)
T d2onda1         169 ----HVYVTAALMEYYCSKDKSVAFKIFEL-GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI  243 (308)
T ss_dssp             ----HHHHHHHHHHHHTSCCHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred             ----HHHHHHHHHHHHhccCHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence                1233344443 446899999999999 55678888866554443333333222  7889999997663    3446


Q ss_pred             HHhhhhhh
Q 008435          519 LTVSNIID  526 (565)
Q Consensus       519 l~~~~~~~  526 (565)
                      |....+..
T Consensus       244 w~~~~~fE  251 (308)
T d2onda1         244 WARFLAFE  251 (308)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            65554443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=1.3e-05  Score=76.87  Aligned_cols=103  Identities=16%  Similarity=0.088  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ..+..+|..+...|++++|+..++++++.++..      ..++..+|.++...|++++|.+.+.+++....-...+.   
T Consensus        52 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~---  128 (366)
T d1hz4a_          52 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ---  128 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT---
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccch---
Confidence            467789999999999999999999999876543      57889999999999999999999999987531111111   


Q ss_pred             hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435          444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIG  476 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa  476 (565)
                       .......+..+|.++...|++++|...++++.
T Consensus       129 -~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~  160 (366)
T d1hz4a_         129 -LPMHEFLVRIRAQLLWAWARLDEAEASARSGI  160 (366)
T ss_dssp             -STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence             11222356678889999999999999998843

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.20  E-value=2.3e-05  Score=74.27  Aligned_cols=94  Identities=15%  Similarity=0.145  Sum_probs=76.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPE  443 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~l~~l~~~P~~~~  443 (565)
                      ||++++.+|..+..++|+++|+++|++|.+.  ++++|++.||.+|..    ..++.+|..+++++.+..       ++ 
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-------~~-   70 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------YS-   70 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CH-
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-------cc-
Confidence            6899999999999999999999999999765  699999999999997    679999999999996431       11 


Q ss_pred             hhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhh
Q 008435          444 AIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGN  477 (565)
Q Consensus       444 ~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa~  477 (565)
                            .+...+|..+..    .++.++|...++++..
T Consensus        71 ------~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~  102 (265)
T d1ouva_          71 ------NGCHLLGNLYYSGQGVSQNTNKALQYYSKACD  102 (265)
T ss_dssp             ------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             ------chhhccccccccccccchhhHHHHHHHhhhhh
Confidence                  345557776654    5678888888888433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.94  E-value=1.4e-06  Score=84.75  Aligned_cols=116  Identities=11%  Similarity=-0.032  Sum_probs=91.5

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (565)
Q Consensus       359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~  438 (565)
                      ...+...|.+++....+|..++..|++++|+..|+++++++|++..++..++.++...++.+++...+++..    ...+
T Consensus        20 ~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~----~~~~   95 (264)
T d1zbpa1          20 IEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAK----VLGE   95 (264)
T ss_dssp             HHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEE----CCCS
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhh----cccC
Confidence            445666677899999999999999999999999999999999999999999999887777766655544431    1111


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435          439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS  486 (565)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~  486 (565)
                      |      + ....+...+.++...|++++|++.+++ +....|+.+..
T Consensus        96 p------~-~~~~~l~~a~~~~~~gd~~~A~~~~~~-a~e~~p~~~~~  135 (264)
T d1zbpa1          96 N------E-ELTKSLVSFNLSMVSQDYEQVSELALQ-IEELRQEKGFL  135 (264)
T ss_dssp             C------H-HHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCCCCEE
T ss_pred             c------h-HHHHHHHHHHHHHhCCCHHHHHHHHHH-HHhcCCCCCcc
Confidence            2      1 113455678889999999999999999 66688887743

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=4.6e-05  Score=74.36  Aligned_cols=125  Identities=9%  Similarity=-0.007  Sum_probs=93.2

Q ss_pred             CCCchHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHc
Q 008435          384 DKERPIPLLQLALNK-EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ  462 (565)
Q Consensus       384 ~~~eAi~~l~~AL~~-dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~  462 (565)
                      ..++|...|++|++. .|.+...|...+.++...|++++|...|+++++.     .|.+.      ..++...+....+.
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~-----~~~~~------~~~w~~~~~~~~~~  147 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDP------TLVYIQYMKFARRA  147 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCT------HHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-----hcCCh------HHHHHHHHHHHHHc
Confidence            457889999999984 8999999999999999999999999999999643     34432      12455677888899


Q ss_pred             CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH---HHHH--HHHHHHHHhcCCCcHHHHHhh
Q 008435          463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL---ARYV--ANITFLIFATSPSIINLLTVS  522 (565)
Q Consensus       463 g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L---a~~l--~~~l~~Al~l~P~~~~~l~~~  522 (565)
                      |++++|++.|++ +....|.+......+  +....   +..-  ...+++++..+|+..+++...
T Consensus       148 ~~~~~ar~i~~~-al~~~~~~~~~~~~~--a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y  209 (308)
T d2onda1         148 EGIKSGRMIFKK-AREDARTRHHVYVTA--ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY  209 (308)
T ss_dssp             HCHHHHHHHHHH-HHTSTTCCTHHHHHH--HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CChHHHHHHHHH-HHHhCCCcHHHHHHH--HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            999999999999 666788777542211  11110   0001  678999999999987766443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=3.9e-05  Score=69.58  Aligned_cols=65  Identities=9%  Similarity=-0.064  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK  432 (565)
Q Consensus       368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l  432 (565)
                      ..+.+..++..+...|++++|+.+++++++.||.+..+|..++.++...|++++|++.|+++.+.
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~  130 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  130 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.55  E-value=0.0005  Score=64.58  Aligned_cols=62  Identities=15%  Similarity=0.181  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhh
Q 008435          402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGN  477 (565)
Q Consensus       402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa~  477 (565)
                      ||++++.||..+.+.+++++|+++|++|.+..       +       ..+.+.+|.+|..    ..++.+|..++++++.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-------~-------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-------E-------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------C-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-------C-------HHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            68899999999999999999999999996431       1       2478889999987    7799999999999544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00073  Score=57.05  Aligned_cols=72  Identities=10%  Similarity=0.112  Sum_probs=62.6

Q ss_pred             CCCHHHHHHHHHHHHHCC---CCCchHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435          366 NLTPKELIALSVKFLSKG---DKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE  441 (565)
Q Consensus       366 ~~~~~~l~~lA~~l~~~g---~~~eAi~~l~~AL~~dP~~a-~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~  441 (565)
                      ..+++..|+.|+.+....   +.++|+.+++.+++.+|.+. +++|.||..|++.|++++|..++++++++     +|++
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i-----eP~n  106 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-----ERNN  106 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc-----CCCc
Confidence            446888999999998764   55689999999999999775 79999999999999999999999999765     5766


Q ss_pred             h
Q 008435          442 P  442 (565)
Q Consensus       442 ~  442 (565)
                      .
T Consensus       107 ~  107 (124)
T d2pqrb1         107 K  107 (124)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=0.0016  Score=54.85  Aligned_cols=72  Identities=7%  Similarity=-0.009  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435          403 INALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK  479 (565)
Q Consensus       403 a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l  479 (565)
                      +++.+..|+++....   +.++|+..++++++.     +|.      .....++++|++|.++|+|++|..++++ +...
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~------~~rd~lY~Lav~yyklgdy~~A~~~~~~-~L~i  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AES------RRRECLYYLTIGCYKLGEYSMAKRYVDT-LFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGG------GHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----Cch------hHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHcc
Confidence            678888888888765   457899999998643     222      2235788999999999999999999999 7779


Q ss_pred             CCCCchh
Q 008435          480 EPEEPKS  486 (565)
Q Consensus       480 ~P~~~~~  486 (565)
                      +|++..+
T Consensus       103 eP~n~qA  109 (124)
T d2pqrb1         103 ERNNKQV  109 (124)
T ss_dssp             CTTCHHH
T ss_pred             CCCcHHH
Confidence            9998754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.14  E-value=0.00071  Score=57.40  Aligned_cols=80  Identities=15%  Similarity=0.103  Sum_probs=62.6

Q ss_pred             CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008435          382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV  457 (565)
Q Consensus       382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~  457 (565)
                      ..+.++|+.+++++.+.  +++.+.+.||.+|..    ..++++|+++|+++.+..       +       ..+.+.+|.
T Consensus        36 ~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-------~-------~~a~~~Lg~   99 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-------D-------QDGCLILGY   99 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-------C-------HHHHHHHHH
T ss_pred             ccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-------c-------chHHHHHHH
Confidence            45677889999998764  789999999999886    457899999999996531       1       146777899


Q ss_pred             HHHH----cCCHHHHHHHHHHHhh
Q 008435          458 ACIR----QEKWEEGIAHLERIGN  477 (565)
Q Consensus       458 a~~~----~g~~~eAi~~leraa~  477 (565)
                      +|..    ..+.++|+++|++++.
T Consensus       100 ~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_         100 KQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHcCCccCCCHHHHHHHHHHHHH
Confidence            8877    5689999999999555

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.00  E-value=0.00095  Score=56.57  Aligned_cols=77  Identities=9%  Similarity=0.031  Sum_probs=60.5

Q ss_pred             CCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH-
Q 008435          383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR-  461 (565)
Q Consensus       383 g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~-  461 (565)
                      .|+++|+.+|++|.+.  +++.+.+.||..  ...+.++|+++|+++.+..       +       ..+.+.+|..|.. 
T Consensus         7 kd~~~A~~~~~kaa~~--g~~~a~~~l~~~--~~~~~~~a~~~~~~aa~~g-------~-------~~a~~~Lg~~y~~g   68 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL--NEMFGCLSLVSN--SQINKQKLFQYLSKACELN-------S-------GNGCRFLGDFYENG   68 (133)
T ss_dssp             HHHHHHHHHHHHHHHT--TCTTHHHHHHTC--TTSCHHHHHHHHHHHHHTT-------C-------HHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHC--CChhhhhhhccc--cccCHHHHHHHHhhhhccc-------c-------hhhhhhHHHhhhhc
Confidence            3677899999999887  477788888753  4568999999999996531       1       2467789999876 


Q ss_pred             ---cCCHHHHHHHHHHHhh
Q 008435          462 ---QEKWEEGIAHLERIGN  477 (565)
Q Consensus       462 ---~g~~~eAi~~leraa~  477 (565)
                         ..++++|+++|++++.
T Consensus        69 ~~~~~d~~~A~~~~~~aa~   87 (133)
T d1klxa_          69 KYVKKDLRKAAQYYSKACG   87 (133)
T ss_dssp             SSSCCCHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHhhhhc
Confidence               5679999999999665

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=81.70  E-value=1.6  Score=43.34  Aligned_cols=83  Identities=11%  Similarity=0.019  Sum_probs=58.1

Q ss_pred             CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008435          382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR  461 (565)
Q Consensus       382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~  461 (565)
                      .+..+.|...+........+.......++ .....++++.+..+++..         |.++   .....+.||+|.++..
T Consensus       265 ~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l---------~~~~---~~~~r~~YW~gRa~~~  331 (450)
T d1qsaa1         265 NDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARL---------PMEA---KEKDEWRYWQADLLLE  331 (450)
T ss_dssp             TTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHS---------CTTG---GGSHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhc---------Cccc---ccHHHHHHHHHHHHHH
Confidence            45566677777777665555554444444 456778999888887665         2222   1123578999999999


Q ss_pred             cCCHHHHHHHHHHHhh
Q 008435          462 QEKWEEGIAHLERIGN  477 (565)
Q Consensus       462 ~g~~~eAi~~leraa~  477 (565)
                      .|+.++|..+|++++.
T Consensus       332 ~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         332 RGREAEAKEILHQLMQ  347 (450)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             cCChhhHHHHHHHHhc
Confidence            9999999999999543