Citrus Sinensis ID: 008437

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-----
Protein Sequence
MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSEESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYSVSQY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHcccccccccccccccHHccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHccccccccHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHcccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHccccccHHHccccEEEEcccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHcHccccccccccccccccccHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHcccHHccHHEcccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccHcHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHcHHcHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHcccccccHHHHcccccccccccccccccccccHHHcccccccHHEEccccEEEEEc
Coil and Loop (DISEMBL)
MRKYSKLFRSemiddndsqgstpcsptiqcsfedgvhngnehaFDRQLSKLCsfnfrpnnrrsgqmplppeelrcpislqlmydpviiasgQTYERICIEKWlsdghstcpktqqklphlcltpnycvkGLIASwcemngvsvpdsppdsldlnYWRLALSeestnsksNEIVRSCklkemkvvplevsgtieeseyndieniyaqedesgnnVFERYQDFLNVLNegenlgqkcNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLsflddakpiigsshaVPFLVELCkgktehqcKLDALHALynlstipsnipnLLSAGIISglqslavpgdpmwtEKSLAVLLNLAASaagkeemnstpglvsGLATvldtgelieQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIsvngstrgrDKAQRLLMLFREqrqrdhppvdigqqdddsseklkptytptpdhapeskplcksisrrkmGKAFSFLWKsksysvsqy
Flexible Loop (DISEMBL)
MRKYSKLFRSemiddndsqgstpcSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPnnrrsgqmplppEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALseestnsksneivrscklkemkvvplevsgtieeseynDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVsisvngstrgrDKAQRLLMLFreqrqrdhppvdigqqdddsseKLKPtytptpdhapeskplcksisrrKMGKAFsflwksksysvsqy
Low Complexity Region (SEG)
MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSEESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKslavllnlaasaaGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYSVSQY
Disordered region (IsUnstruct)
*******************************************F**QLSKLCSFN*****************LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSV*******LDLNYWRLAL************VRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA**********GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG***********L********************************************************FSFLW**********
Disordered Region (DISOPRED)
******L****************************************************************ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRL************EIVRSC************************ENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESA*******A**IGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK******CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML**********************************************************WKSKSYSVSQY
Disordered Region (DISEMBL)
MRKYSKLFRSEMI**********CSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSEESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDH***************LKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYSVSQY
Disordered Region (DISPRO)
*****************************************************************MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVP******************************************************************GNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDH***D**************************************GKAFSFLWKSKSYSVSQY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSEESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYSVSQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	565	2.2.26 [Sep-21-2011]
O48700	771	U-box domain-containing p	yes	no	0.980	0.718	0.664	0.0
Q9C7G1	768	U-box domain-containing p	no	no	0.969	0.713	0.647	0.0
Q9CAG5	782	U-box domain-containing p	no	no	0.973	0.703	0.629	0.0
Q9SNC6	660	U-box domain-containing p	no	no	0.713	0.610	0.324	1e-49
Q5XEZ8	707	U-box domain-containing p	no	no	0.750	0.599	0.323	5e-48
Q5VRH9	611	U-box domain-containing p	no	no	0.688	0.636	0.311	1e-45
Q9ZV31	654	U-box domain-containing p	no	no	0.692	0.597	0.285	2e-33
Q0IMG9	694	E3 ubiquitin-protein liga	no	no	0.584	0.475	0.313	8e-33
A2ZLU6	694	Protein spotted leaf 11 O	N/A	no	0.584	0.475	0.313	8e-33
Q9C9A6	628	U-box domain-containing p	no	no	0.661	0.595	0.272	5e-31

>sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/567 (66%), Positives = 439/567 (77%), Gaps = 13/567 (2%)

Query: 1   MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRP-N 59
           MRKYSKLFRSEM+D+NDS  STPCSPT Q   ED V+     AF RQLSK  S N++P N
Sbjct: 211 MRKYSKLFRSEMMDENDSPCSTPCSPTGQGPNEDRVN-----AFGRQLSKFGSINYKPMN 265

Query: 60  NRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119
           +R+SGQMP+PPEELRCPISLQLMYDPVIIASGQTYER+CIEKW SDGH++CPKTQQ+LPH
Sbjct: 266 SRKSGQMPIPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLPH 325

Query: 120 LCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNSKSNEIVRSCKL 178
           L LTPNYCVKGLIASWCE NG++VP  PP+SLDLNYWRLA+S+ ES NSKS + V  C  
Sbjct: 326 LSLTPNYCVKGLIASWCEQNGITVPTGPPESLDLNYWRLAMSDSESPNSKSVDSVGLCTP 385

Query: 179 KEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIV 238
           K+++VVPLE S TIE       +N    E +S  NV E YQD L ++++ E+L +KC +V
Sbjct: 386 KDIRVVPLEESSTIESERQQKEKNNAPDEVDSEINVLEGYQDILAIVDKEEDLAKKCKVV 445

Query: 239 EQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298
           E +R+LLKD+EEAR+  GANGFV A L+FLESAV + N+ AQE GAMALFNLAVNNNRNK
Sbjct: 446 ENVRILLKDNEEARILMGANGFVEAFLQFLESAVHDNNAAAQETGAMALFNLAVNNNRNK 505

Query: 299 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTE 358
           ELML +GVIPLLEKMIS S S G ATALYLNLS L+ AKP+IGSS AV F V L    T+
Sbjct: 506 ELMLTSGVIPLLEKMISCSQSQGPATALYLNLSCLEKAKPVIGSSQAVSFFVNLLLQDTK 565

Query: 359 HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA 418
            QCKLDALHALYNLST   NIP LLS+ II  LQ LA  G+ +W EKSLAVLLNLA+S  
Sbjct: 566 TQCKLDALHALYNLSTYSPNIPTLLSSNIIKSLQVLASTGNHLWIEKSLAVLLNLASSRE 625

Query: 419 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI 478
           GKEEM +T G++S LATVLDTG+ +EQEQAVSCL +LC G+E C QMVLQEGVIP+LVSI
Sbjct: 626 GKEEMITTQGMISTLATVLDTGDTVEQEQAVSCLVILCTGSESCIQMVLQEGVIPSLVSI 685

Query: 479 SVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPES--K 536
           SVNGS RGRDK+Q+LLMLFREQR RD P  +  +++        P   P P  APES  K
Sbjct: 686 SVNGSPRGRDKSQKLLMLFREQRHRDQPSPN--KEEAPRKTVSAPMAIPAPVSAPESEVK 743

Query: 537 PLCKSISRRK-MGKAFSFLWKSKSYSV 562
           PL KSISRRK M + FSFLWK KS+S+
Sbjct: 744 PLTKSISRRKTMTRPFSFLWK-KSHSI 769

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=1 SV=1

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/573 (64%), Positives = 444/573 (77%), Gaps = 25/573 (4%)

Query: 1   MRKYSKLFRSEMIDDNDSQGST--PCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRP 58
           MRKYSKLFRSE+ DDNDSQGS+  PCSPTIQ S +D     +  AFDRQLSKL SFNFR 
Sbjct: 211 MRKYSKLFRSEIWDDNDSQGSSSLPCSPTIQGSIDDA----HGRAFDRQLSKLSSFNFRS 266

Query: 59  --NNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQK 116
             NNRRS QM +PPEELRCPISLQLMYDPVIIASGQTYERICIEKW SDGH+TCPKT Q+
Sbjct: 267 CNNNRRSSQMSVPPEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQ 326

Query: 117 LPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALS-EESTNSKSNEIVRS 175
           L HLCLTPNYCVK LI+SWCE NGV VPD PP+SLDLNYWRLALS  EST+++S + V S
Sbjct: 327 LSHLCLTPNYCVKALISSWCEQNGVQVPDGPPESLDLNYWRLALSVSESTDTRSAKRVGS 386

Query: 176 CKLKEMKVVPLEVSGTIEE----SEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENL 231
           CKLK++KVVPLE SGTI+E    SEY        QED+    + ER  + L  L + + L
Sbjct: 387 CKLKDVKVVPLEESGTIKEEACESEY--------QEDQV--TLVERCTELLTTLTDVDTL 436

Query: 232 GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291
            +KC +VEQIR+LLKDDEEAR+  G NG V ALL+FL SA+ E N+ AQ++GAMALFNLA
Sbjct: 437 RKKCRVVEQIRVLLKDDEEARILMGENGCVEALLQFLGSALNENNASAQKVGAMALFNLA 496

Query: 292 VNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVE 351
           V+NNRNKELMLA+G+IPLLE+M+ N +SHG+ TA+YLNLS L++AKP+IGSS AVPF+V 
Sbjct: 497 VDNNRNKELMLASGIIPLLEEMLCNPHSHGSVTAIYLNLSCLEEAKPVIGSSLAVPFMVN 556

Query: 352 LCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL 411
           L   +TE QCK+DALH+L++LST P NIP LLSA +++ LQSL +  +  WTEKSLAVLL
Sbjct: 557 LLWTETEVQCKVDALHSLFHLSTYPPNIPCLLSADLVNALQSLTISDEQRWTEKSLAVLL 616

Query: 412 NLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 471
           NL  + AGK+EM S P LVS L T+LDTGE  EQEQAVS L +LCN +E C +MVLQEGV
Sbjct: 617 NLVLNEAGKDEMVSAPSLVSNLCTILDTGEPNEQEQAVSLLLILCNHSEICSEMVLQEGV 676

Query: 472 IPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDH 531
           IP+LVSISVNG+ RGR++AQ+LL LFRE RQRD   +   Q  + +S   +  ++     
Sbjct: 677 IPSLVSISVNGTQRGRERAQKLLTLFRELRQRDQTHLTEPQHTEVTSP--EDGFSVASAA 734

Query: 532 APESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 564
             E+KP CKS SR+KMG+AFSFLWKSKS+SV Q
Sbjct: 735 VTETKPQCKSASRKKMGRAFSFLWKSKSFSVYQ 767

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=2 SV=1

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/586 (62%), Positives = 436/586 (74%), Gaps = 36/586 (6%)

Query: 1   MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRP-N 59
           MRK SKLFRSE++D+NDS GS PCSP      ED   +G+ H F RQLS+  S N +P N
Sbjct: 211 MRKCSKLFRSEILDENDSPGSYPCSPN-----ED---HGSVHGFGRQLSRFGSLNDKPMN 262

Query: 60  NRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119
           +  SGQMP+PPEELRCPISLQLM DPVIIASGQTYER+CIEKW SDGH+TCPKTQQ+LPH
Sbjct: 263 SINSGQMPVPPEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQLPH 322

Query: 120 LCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNSKSNEIVRSCKL 178
           + LTPN CVKGLIASWCE NG  +P  PP+S DL+YWRLALS+ EST S+S   + S KL
Sbjct: 323 ISLTPNNCVKGLIASWCEQNGTQIPSGPPESQDLDYWRLALSDSESTKSQSVNSIGSYKL 382

Query: 179 KEMKVVPLEVSGTIEESEYNDIENIYAQEDESGN---NVFERYQDFLNVLNEGENLGQKC 235
           K +K+VPLE +GT      N  E+  + +D+  +   NV ERYQD L VLNE E L +KC
Sbjct: 383 KGVKIVPLEENGTTVVERQNTEESFVSDDDDEEDSDINVLERYQDLLAVLNEEEGLEKKC 442

Query: 236 NIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295
            +VE+IRLLLKDDEEAR+F GANGFV ALLRFL SAV + N+ AQ+ GAMALFNLAVNNN
Sbjct: 443 KVVEKIRLLLKDDEEARIFMGANGFVEALLRFLGSAVDDNNAAAQDSGAMALFNLAVNNN 502

Query: 296 RNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG 355
           RNKELML +GVI LLEKMIS++ SHG+ATALYLNLS LD+AK +IGSS AVPFLV+L + 
Sbjct: 503 RNKELMLTSGVIRLLEKMISSAESHGSATALYLNLSCLDEAKSVIGSSQAVPFLVQLLQK 562

Query: 356 KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLA 414
           + E QCKLDALHALYNLST   NIP LLS+ II  LQ  LA  G+ +W EKSLAVLLNLA
Sbjct: 563 EIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGENLWIEKSLAVLLNLA 622

Query: 415 ASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPA 474
           +S  GK+E  S+ G++S LATVLD G+  EQEQAVSCL +LCNG E C QMVLQEGVIP+
Sbjct: 623 SSQEGKDEAVSSQGMISSLATVLDMGDTTEQEQAVSCLLILCNGRESCIQMVLQEGVIPS 682

Query: 475 LVSISVNGSTRGRDKAQRLLMLFREQRQ--------RDHPPVDIGQQDDDSSEKLKP--- 523
           LVSISVNG+ RGR+K+Q+LLMLFRE+RQ        RD PP     Q + + + L     
Sbjct: 683 LVSISVNGTPRGREKSQKLLMLFREERQQRDQPSSNRDEPP-----QKEPARKSLSAPLS 737

Query: 524 TYTPTPDHAP----ESKPLCKSISRRK-MGKAFSFLWKSKSYSVSQ 564
            +  TP  A     E + L KS+SRRK M + FSF WK KSYSV +
Sbjct: 738 VHGSTPASASVQDYEPRVLSKSMSRRKSMARPFSFFWK-KSYSVRE 782

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  198 bits (503), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 225/466 (48%), Gaps = 63/466 (13%)

Query: 32  FEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASG 91
            +D V   +++  ++++      N + +   S ++P+ P++ RCPISL++M DPVI++SG
Sbjct: 219 IKDFVQTEDDNGEEQKVGVNSRSNGQTSTAASQKIPVIPDDFRCPISLEMMRDPVIVSSG 278

Query: 92  QTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSL 151
           QTYER CIEKW+  GHSTCPKTQQ L    LTPNY ++ LIA WCE N +  P  PP SL
Sbjct: 279 QTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLRSLIAQWCEANDIE-PPKPPSSL 337

Query: 152 DLNYWRLALSEESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESG 211
                                            P +VS     +E N IE          
Sbjct: 338 R--------------------------------PRKVSSFSSPAEANKIE---------- 355

Query: 212 NNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESA 271
                   D +  L  G    Q+    E IRLL K + + RV     G +  L+  L + 
Sbjct: 356 --------DLMWRLAYGNPEDQRSAAGE-IRLLAKRNADNRVAIAEAGAIPLLVGLLSTP 406

Query: 272 VCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGA--ATALYLN 329
               +S  QE    AL NL++  N NK  +++AG IP + +++   +      A A   +
Sbjct: 407 ----DSRIQEHSVTALLNLSICEN-NKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFS 461

Query: 330 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIIS 389
           LS +D+ K  IG+  A+P LV L    T+ + K DA  AL+NL     N    + AG+I 
Sbjct: 462 LSVIDENKVTIGALGAIPPLVVLLNEGTQ-RGKKDAATALFNLCIYQGNKGKAIRAGVIP 520

Query: 390 GLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA 448
            L  L   PG  M  E +LA+L  L++   GK  + S+   V  L   + TG    +E A
Sbjct: 521 TLTRLLTEPGSGMVDE-ALAILAILSSHPEGKAIIGSSDA-VPSLVEFIRTGSPRNRENA 578

Query: 449 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494
            + L  LC+G+ +      + G++  L+ ++ NG+ RG+ KA +LL
Sbjct: 579 AAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLL 624

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1

 Score =  192 bits (489), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 154/476 (32%), Positives = 240/476 (50%), Gaps = 52/476 (10%)

Query: 70  PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
           P + RC +SL+LM DPVI+ASGQT+ER+ I+KW+  G   CPKT+Q L H  LTPN+ V+
Sbjct: 241 PSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLTPNFIVR 300

Query: 130 GLIASWCEMNGVSVPDSPPDSLDLNY----WRLALSEESTNSKSNEIVRSCKLKEMKVV- 184
             +ASWCE N V     PPD L+L +    + L +     +S  N    S   +E++ V 
Sbjct: 301 AFLASWCETNNV----YPPDPLELIHSSEPFPLLVESVRASSSENGHSESLDAEELRQVF 356

Query: 185 ------PLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEG------ENLG 232
                 P  VS  + +++ N+  N  A    + +N   ++ +  +  + G         G
Sbjct: 357 SRSASAPGIVSEVVCKTKRNN--NAAADRSLTRSNTPWKFPEERHWRHPGIIPATVRETG 414

Query: 233 QKCNIVEQIRLLLKD----------DEEARVFTGA-----NGFVVALLRFLESAVCERNS 277
              +I  +++ L+ D          +  AR+   A     N  V+A    + S V    S
Sbjct: 415 SSSSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYS 474

Query: 278 YAQEIGAMA---LFNLAVNNNRNKELMLAAG-VIPLLEKM----ISNSNSHGAATALYLN 329
             + I A A   L NL++N+N NK L+  +G ++PL+  +    +  + ++ AAT    +
Sbjct: 475 TDERIQADAVTCLLNLSINDN-NKSLIAESGAIVPLIHVLKTGYLEEAKANSAAT--LFS 531

Query: 330 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIIS 389
           LS +++ K  IG + A+  LV+L  G      K DA  AL+NLS    N   ++ AG + 
Sbjct: 532 LSVIEEYKTEIGEAGAIEPLVDLL-GSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVR 590

Query: 390 GLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 449
            L  L  P   M  EK++ VL NLA    GK  +    G +  L  V++ G    +E A 
Sbjct: 591 YLVELMDPAFGM-VEKAVVVLANLATVREGKIAIGEEGG-IPVLVEVVELGSARGKENAT 648

Query: 450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDH 505
           + L  LC  + K C  V++EGVIP LV+++ +G+ RG++KAQ LL  F+  RQ + 
Sbjct: 649 AALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQSNQ 704

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  185 bits (469), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 144/463 (31%), Positives = 217/463 (46%), Gaps = 74/463 (15%)

Query: 41  EHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIE 100
           +HA D   ++  S   R         P+ P+E RCPISL+LM DPVI++SGQTYER CI+
Sbjct: 208 DHANDALTTRSASIKHRS--------PIIPDEFRCPISLELMQDPVIVSSGQTYERSCIQ 259

Query: 101 KWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLAL 160
           KWL  GH TCPKTQQ L H  LTPN+ +K LI+ WCE NG+ +P                
Sbjct: 260 KWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLISQWCEANGIELP---------------- 303

Query: 161 SEESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQD 220
            +   NS+  +  +S                   S+Y          D +G         
Sbjct: 304 -KNKQNSRDKKAAKS-------------------SDY----------DHAG------LVS 327

Query: 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 280
            +N L  G    Q+    E IRLL K +   R+     G +  L+  L S+    +   Q
Sbjct: 328 LMNRLRSGNQDEQRAAAGE-IRLLAKRNVNNRICIAEAGAIPLLVNLLSSS----DPRTQ 382

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKP 338
           E    AL NL+++ N NK  ++ +  IP + +++   +  +   A A   +LS +D+ K 
Sbjct: 383 EHAVTALLNLSIHEN-NKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKV 441

Query: 339 IIGSSHAVPFLVE-LCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP 397
            IG++ A+P L+  LC G    + K DA  A++NL     N    + AGI+  L +  V 
Sbjct: 442 TIGAAGAIPPLINLLCDGSP--RGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVD 499

Query: 398 GDPMWTEKSLAVLLNLAASAAGKEEM-NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 456
                 +++L++L  LA +  GK  +  S P  +  L  V+ TG    +E A + L+LLC
Sbjct: 500 PTGGMIDEALSLLSILAGNPEGKIVIARSEP--IPPLVEVIKTGSPRNRENAAAILWLLC 557

Query: 457 NGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499
           + + +        GV  AL  +S  G+ R + KA  +L L  +
Sbjct: 558 SADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSILELMHQ 600

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 207/455 (45%), Gaps = 64/455 (14%)

Query: 66  MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 125
           M +PPEE RCPISL+LM DPVI++SGQTYER CI+KWL  GH TCPKTQ+ L    +TPN
Sbjct: 253 MLIPPEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSDIMTPN 312

Query: 126 YCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSEESTNSKSNEIVRSCKLKEMKVVP 185
           Y ++ LIA WCE NG+  P  P  ++     + + S  + + + N+I     LK     P
Sbjct: 313 YVLRSLIAQWCESNGIEPPKRP--NISQPSSKASSSSSAPDDEHNKI-EELLLKLTSQQP 369

Query: 186 LEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLL 245
            +      E      +N + +   + +       + L + N+     Q+  +   + L +
Sbjct: 370 EDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRT--QEHAVTSILNLSI 427

Query: 246 KDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAG 305
             + + ++   ++G V  ++  L+    E    A+E  A  LF+L+V  + NK  + AAG
Sbjct: 428 CQENKGKIVY-SSGAVPGIVHVLQKGSME----ARENAAATLFSLSV-IDENKVTIGAAG 481

Query: 306 VIPLLEKMISNSNSHG---AATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCK 362
            IP L  ++S  +  G   AATAL+ NL      K     +  VP L+ L    TE +  
Sbjct: 482 AIPPLVTLLSEGSQRGKKDAATALF-NLCIFQGNKGKAVRAGLVPVLMRLL---TEPESG 537

Query: 363 L--DALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGK 420
           +  ++L  L  LS+ P     + +A  +  L      G P   E S AVL++        
Sbjct: 538 MVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVH-------- 589

Query: 421 EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV 480
                                             LC+ N++      + G++  L+ ++ 
Sbjct: 590 ----------------------------------LCSWNQQHLIEAQKLGIMDLLIEMAE 615

Query: 481 NGSTRGRDKAQRLLMLFRE--QRQRDHPPVDIGQQ 513
           NG+ RG+ KA +LL  F     +Q+ H  + +  Q
Sbjct: 616 NGTDRGKRKAAQLLNRFSRFNDQQKQHSGLGLEDQ 650

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2

 Score =  142 bits (358), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 182/379 (48%), Gaps = 49/379 (12%)

Query: 70  PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
           P+E RCPISL+LM DPVI+++GQTYER CIEKW++ GH TCP TQQK+    LTPNY ++
Sbjct: 274 PDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLR 333

Query: 130 GLIASWCEMNGV------SVPDSPP-----------DSL-------DLNYWRLALSEEST 165
            LI+ WCE NG+      + P+ P            D+L       D    R A +E   
Sbjct: 334 SLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRL 393

Query: 166 NSKSNEIVRSCKLKEMKVVPLEVSGT------IEESEYNDIENIYAQEDESGNNVFE-RY 218
            +K N   R C + E   +PL +S         +E     + N+   ED   + +     
Sbjct: 394 LAKRNANNRIC-IAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAV 452

Query: 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSY 278
              ++VL  G    ++        L + D  E +V  G  G + AL+  L     E +  
Sbjct: 453 PSIVHVLKNGSMEARENAAATLFSLSVID--EYKVTIGGMGAIPALVVLL----GEGSQR 506

Query: 279 AQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGA----ATALYLNLSFLD 334
            ++  A ALFNL +    NK   + AG++PL+  +++N    GA    A A+   LS   
Sbjct: 507 GKKDAAAALFNLCIYQG-NKGRAIRAGLVPLIMGLVTNPT--GALMDEAMAILSILSSHP 563

Query: 335 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSA---GIISGL 391
           + K  IG++  VP LVE+    T    + +A   + +L +   ++ +L  A   GI+  L
Sbjct: 564 EGKAAIGAAEPVPVLVEMIGSGTPRN-RENAAAVMLHLCSGEHHLVHLARAQECGIMVPL 622

Query: 392 QSLAVPGDPMWTEKSLAVL 410
           + LA+ G      K++ +L
Sbjct: 623 RELALNGTDRGKRKAVQLL 641

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2

 Score =  142 bits (358), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 182/379 (48%), Gaps = 49/379 (12%)

Query: 70  PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
           P+E RCPISL+LM DPVI+++GQTYER CIEKW++ GH TCP TQQK+    LTPNY ++
Sbjct: 274 PDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLR 333

Query: 130 GLIASWCEMNGV------SVPDSPP-----------DSL-------DLNYWRLALSEEST 165
            LI+ WCE NG+      + P+ P            D+L       D    R A +E   
Sbjct: 334 SLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRL 393

Query: 166 NSKSNEIVRSCKLKEMKVVPLEVSGT------IEESEYNDIENIYAQEDESGNNVFE-RY 218
            +K N   R C + E   +PL +S         +E     + N+   ED   + +     
Sbjct: 394 LAKRNANNRIC-IAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAV 452

Query: 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSY 278
              ++VL  G    ++        L + D  E +V  G  G + AL+  L     E +  
Sbjct: 453 PSIVHVLKNGSMEARENAAATLFSLSVID--EYKVTIGGMGAIPALVVLL----GEGSQR 506

Query: 279 AQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGA----ATALYLNLSFLD 334
            ++  A ALFNL +    NK   + AG++PL+  +++N    GA    A A+   LS   
Sbjct: 507 GKKDAAAALFNLCIYQG-NKGRAIRAGLVPLIMGLVTNPT--GALMDEAMAILSILSSHP 563

Query: 335 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSA---GIISGL 391
           + K  IG++  VP LVE+    T    + +A   + +L +   ++ +L  A   GI+  L
Sbjct: 564 EGKAAIGAAEPVPVLVEMIGSGTPRN-RENAAAVMLHLCSGEHHLVHLARAQECGIMVPL 622

Query: 392 QSLAVPGDPMWTEKSLAVL 410
           + LA+ G      K++ +L
Sbjct: 623 RELALNGTDRGKRKAVQLL 641

Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity.

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score =  136 bits (342), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 202/441 (45%), Gaps = 67/441 (15%)

Query: 70  PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
           PE+  CPISL+LM DP I+++GQTYER  I++W+  G+ +CPKTQQKL +  LTPNY ++
Sbjct: 244 PEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYVLR 303

Query: 130 GLIASWCEMNGVSVPDSPPDSLDLNYWRLALSEESTNSKSNEIVRSCKLKEMKVVPLEVS 189
            LI+ WC  + +  P               ++  + NS  +    S  +  ++ +  ++S
Sbjct: 304 SLISQWCTKHNIEQPGG------------YMNGRTKNSDGSFRDLSGDMSAIRALVCKLS 351

Query: 190 GTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE 249
               E     +  I +    S +N                            R+L+ +  
Sbjct: 352 SQSIEDRRTAVSEIRSLSKRSTDN----------------------------RILIAE-- 381

Query: 250 EARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGV--- 306
                 GA   +V LL        + ++  QE     + NL++  + NKEL++ AG    
Sbjct: 382 -----AGAIPVLVKLL------TSDGDTETQENAVTCILNLSIYEH-NKELIMLAGAVTS 429

Query: 307 IPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDAL 366
           I L+ +  S      AA  L+ +LS  D+ K IIG+S A+  LV+L +  +  + K DA 
Sbjct: 430 IVLVLRAGSMEARENAAATLF-SLSLADENKIIIGASGAIMALVDLLQYGS-VRGKKDAA 487

Query: 367 HALYNLSTIPSNIPNLLSAGIISGL-QSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM-- 423
            AL+NL     N    + AGI+  L + L         +++L +L  LA++   K  +  
Sbjct: 488 TALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLASNQVAKTAILR 547

Query: 424 -NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG 482
            N+ P L+      L   +   +E A + L  LC  + +    + + G +  L+ +S +G
Sbjct: 548 ANAIPPLID----CLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDG 603

Query: 483 STRGRDKAQRLLMLFREQRQR 503
           + R + KA  LL L R+  ++
Sbjct: 604 TERAKRKANSLLELLRKSSRK 624

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	565
224107629	786	predicted protein [Populus trichocarpa]	0.994	0.715	0.722	0.0
225425823	783	PREDICTED: U-box domain-containing prote	0.996	0.719	0.720	0.0
255547774	774	ubiquitin-protein ligase, putative [Rici	0.978	0.714	0.707	0.0
147865125	783	hypothetical protein VITISV_036163 [Viti	0.996	0.719	0.717	0.0
224100037	775	predicted protein [Populus trichocarpa]	0.982	0.716	0.712	0.0
356566571	765	PREDICTED: U-box domain-containing prote	0.975	0.720	0.691	0.0
356540164	764	PREDICTED: U-box domain-containing prote	0.975	0.721	0.689	0.0
449450371	778	PREDICTED: U-box domain-containing prote	0.987	0.717	0.649	0.0
357463053	766	U-box domain-containing protein [Medicag	0.976	0.720	0.666	0.0
356525144	766	PREDICTED: U-box domain-containing prote	0.973	0.718	0.667	0.0

>gi|224107629|ref|XP_002314542.1| predicted protein [Populus trichocarpa] gi|222863582|gb|EEF00713.1| predicted protein [Populus trichocarpa]

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/577 (72%), Positives = 481/577 (83%), Gaps = 15/577 (2%)

Query: 1   MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNN 60
           MRKYSKLFRS++ DDNDSQGS PCSPT++ SFEDG   G+ HAF+R LSKL S NF+PN 
Sbjct: 211 MRKYSKLFRSDLTDDNDSQGSAPCSPTVEGSFEDGGPGGDGHAFERHLSKLSSLNFKPNF 270

Query: 61  RRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 120
           R+SGQMPLPPEELRCPISL LMYDPVIIASGQTYERICIEKW SDGH TCPKTQQKL HL
Sbjct: 271 RKSGQMPLPPEELRCPISLHLMYDPVIIASGQTYERICIEKWFSDGHDTCPKTQQKLSHL 330

Query: 121 CLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNSKSNEIVRSCKLK 179
           CLTPNYCVKGL+ASWCE NGV  PD PP+SLDLNYWRLA+SE +S NS+S EIV S KLK
Sbjct: 331 CLTPNYCVKGLVASWCEQNGVPAPDGPPESLDLNYWRLAMSELDSANSRSVEIVGSGKLK 390

Query: 180 EMKVVPLEVSGTIEESEYNDIENIYAQ------EDESGNNVFERYQDFLNVLNEGENLGQ 233
            +KV+PLE SG IEE+E  + EN+  Q      ED+  +NVFERYQ+FL +LN  E+L +
Sbjct: 391 GVKVIPLEGSGLIEEAEETETENLSPQQEDSVPEDDFEDNVFERYQNFLTILNSDEDLKK 450

Query: 234 KCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 293
           KC IVEQ+RLLLKDDEEAR+F GANGFV ALL+FLESAV  RN  A+EIGAMALFNLAVN
Sbjct: 451 KCKIVEQVRLLLKDDEEARIFMGANGFVEALLQFLESAVHARNPMAEEIGAMALFNLAVN 510

Query: 294 NNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC 353
           NNRNKE+MLA+GVI LLE MISNS+S G+ATALYLNLS L++AK IIGSSHAVPFLV++ 
Sbjct: 511 NNRNKEMMLASGVISLLEDMISNSDSDGSATALYLNLSCLEEAKSIIGSSHAVPFLVQIL 570

Query: 354 KGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLN 412
           +G+T  QCKLDALHALYNLS+ P+NIPNLLSAGIISGLQS LAVPGD  W EKS+AVL+N
Sbjct: 571 QGETGAQCKLDALHALYNLSSHPTNIPNLLSAGIISGLQSVLAVPGDHAWIEKSIAVLIN 630

Query: 413 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI 472
           LA S + K+EM S  GL+SGLAT+LDTGE IEQEQAV+CL++LCNG+EK  Q+VLQEGVI
Sbjct: 631 LACSQSAKDEMLSASGLISGLATILDTGEPIEQEQAVACLYILCNGSEKGSQLVLQEGVI 690

Query: 473 PALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSS-----EKLKPTYTP 527
           PALVSISVNG+TRG++KAQ+LLMLFREQRQRD P  ++  Q D SS     ++++ +   
Sbjct: 691 PALVSISVNGTTRGKEKAQKLLMLFREQRQRDQPSAEVHFQRDQSSAEVRFQRIESSSMS 750

Query: 528 TPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 564
            P  APE+KPLCKS+SRRKMGKA S  WKSKSYSV Q
Sbjct: 751 MP--APETKPLCKSVSRRKMGKAISVFWKSKSYSVYQ 785

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425823|ref|XP_002264918.1| PREDICTED: U-box domain-containing protein 6-like [Vitis vinifera]

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/573 (72%), Positives = 474/573 (82%), Gaps = 10/573 (1%)

Query: 1   MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNG-NEHAFDRQLSKLCSFNFRPN 59
           MRKYSKLFRSE+ DDNDSQGS PCSPT+  S EDGV      HAF+RQLSKL SFNF+PN
Sbjct: 211 MRKYSKLFRSELSDDNDSQGSAPCSPTVMGSLEDGVGPAVYGHAFERQLSKLGSFNFKPN 270

Query: 60  NRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119
           NRRSGQMPLP EELRCPISLQLMYDPVII+SGQTYERICIEKW SDGH+TCPKTQQ+L H
Sbjct: 271 NRRSGQMPLPQEELRCPISLQLMYDPVIISSGQTYERICIEKWFSDGHNTCPKTQQQLSH 330

Query: 120 LCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNSKSNEIVRSCKL 178
           LCLTPNYCVKGLIASWCE NGV VPD PP+SLDLNYWRLALSE ESTNSKS + + SCK+
Sbjct: 331 LCLTPNYCVKGLIASWCEQNGVPVPDGPPESLDLNYWRLALSECESTNSKSMDSIGSCKM 390

Query: 179 KEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIV 238
           K +KVVPLE SG IEE E N++EN++ Q++ES  NVFERY++FL +L+  E+L +KC + 
Sbjct: 391 KGVKVVPLEESGIIEEVEGNEMENVHEQDEES-ENVFERYENFLAILDGEEDLRKKCKVA 449

Query: 239 EQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298
           EQIR LLKDDEEAR F GANGFV AL+RFLE AV  RN  AQEIGAMALFNLAVNNNRNK
Sbjct: 450 EQIRHLLKDDEEARNFMGANGFVEALMRFLELAVRGRNEMAQEIGAMALFNLAVNNNRNK 509

Query: 299 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTE 358
           ELMLA+GV+PLLE+MI NSNSHG+ATALYLNLS L++AKP+I +S AVPFL+ L   KTE
Sbjct: 510 ELMLASGVLPLLEEMIPNSNSHGSATALYLNLSCLEEAKPMISTSQAVPFLIHLLGAKTE 569

Query: 359 HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASA 417
            QCKLDALHALYNLST P+NIPNLL+AGIISGL SL   P D  WTEK+LAV +NLA++ 
Sbjct: 570 PQCKLDALHALYNLSTHPANIPNLLAAGIISGLHSLLTDPADNTWTEKTLAVFVNLASNK 629

Query: 418 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS 477
            GK+E+   PGL+SGLAT+LD GE IEQEQAV CL +LCNG+EKC QMVLQEGVIPALVS
Sbjct: 630 LGKDEIMVAPGLISGLATILDVGEAIEQEQAVVCLLILCNGSEKCSQMVLQEGVIPALVS 689

Query: 478 ISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKL-----KPTYTPTPDHA 532
           ISVNG+ RG++KAQ+LLMLFREQRQRD  PV      + S+E +     KP  +   +  
Sbjct: 690 ISVNGTVRGKEKAQKLLMLFREQRQRDPSPVGSPHHTESSTEAVPGPESKPLESKALETK 749

Query: 533 P-ESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 564
           P ESKP CKSISRRK+GKA+++LWKSK+YSV Q
Sbjct: 750 PLESKPYCKSISRRKVGKAWNYLWKSKNYSVYQ 782

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547774|ref|XP_002514944.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223545995|gb|EEF47498.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/574 (70%), Positives = 475/574 (82%), Gaps = 21/574 (3%)

Query: 1   MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNN 60
           MRKYSKLFRSE+ DDNDSQGS PCSPT+Q SF++GV     HAF+RQL+KL SFNF+PNN
Sbjct: 211 MRKYSKLFRSELTDDNDSQGSAPCSPTVQGSFDEGVDG---HAFERQLTKLSSFNFKPNN 267

Query: 61  RRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 120
           RRSGQ+P+PPEELRCPISLQLMYDPVIIASGQTYERICIEKW SDGH TCPKTQQKL HL
Sbjct: 268 RRSGQIPVPPEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHDTCPKTQQKLSHL 327

Query: 121 CLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNSKSNEIVRSCKLK 179
           CLTPNYCVKGL+ SWCE NGV VPD PP+SLDLNY+RL+L + ES NS+S + + S KLK
Sbjct: 328 CLTPNYCVKGLVTSWCEQNGVPVPDGPPESLDLNYFRLSLCQSESANSRSVDSINSGKLK 387

Query: 180 EMKVVPLEVSGTIEESEYNDIENIYAQEDESG------NNVFERYQDFLNVLNEGENLGQ 233
            MKVVPLE +G IEE+E   +E++  Q++E+       +++FERYQ+ L  LNE  +L +
Sbjct: 388 GMKVVPLEENGAIEEAEQQKMESLTPQQEEASLEEDFEDDMFERYQNLLTTLNEEGDLRR 447

Query: 234 KCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 293
           KC +VE+IR LLKDDEEAR+  GANGF+  LL+FLESAV  RN+ AQE+GAMALFNLAVN
Sbjct: 448 KCKVVEKIRRLLKDDEEARICMGANGFIEGLLQFLESAVHARNTMAQEVGAMALFNLAVN 507

Query: 294 NNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC 353
           NNRNKEL+LAAGVIPLLE MI NS+SHG+ATALYLNLS L+DAK IIGSS AVPFLV++ 
Sbjct: 508 NNRNKELLLAAGVIPLLEMMIFNSDSHGSATALYLNLSCLEDAKAIIGSSQAVPFLVQIL 567

Query: 354 KGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLN 412
           +G+ E QCK+DALH LYNLS+  SNI NLLSAGI SGLQS LA PGD  WTEKS+AVL+N
Sbjct: 568 QGEDEPQCKMDALHTLYNLSSRASNILNLLSAGITSGLQSLLAAPGDRAWTEKSIAVLIN 627

Query: 413 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI 472
           LA++A+GK+EM +TPGL+ GLAT+LDTGE IEQEQA SCL++LCNG+EKC Q+VLQEGVI
Sbjct: 628 LASNASGKDEMVTTPGLIGGLATILDTGEPIEQEQAASCLYILCNGSEKCSQLVLQEGVI 687

Query: 473 PALVSISVNGSTRGRDKAQRLLMLFREQRQRD--HPPVDIGQQDDDSSEKLKPTYTPTPD 530
           PALVSISVNG+ RG++KAQ+LLMLFREQRQRD   PP ++  Q  +SS K  P       
Sbjct: 688 PALVSISVNGTIRGKEKAQKLLMLFREQRQRDQPQPPAEVRFQRAESSSKAMP------- 740

Query: 531 HAPESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 564
            A ESKPLCKS+SRRKMGKA SF WKSKSYSV Q
Sbjct: 741 -AQESKPLCKSVSRRKMGKALSFFWKSKSYSVYQ 773

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865125|emb|CAN79836.1| hypothetical protein VITISV_036163 [Vitis vinifera]

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/573 (71%), Positives = 471/573 (82%), Gaps = 10/573 (1%)

Query: 1   MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNG-NEHAFDRQLSKLCSFNFRPN 59
           MRKYSKLFRSE+ DDNDSQGS PCSPT+  S EDGV      HAF+RQLSKL SFNF+PN
Sbjct: 211 MRKYSKLFRSELSDDNDSQGSAPCSPTVMGSLEDGVGPAVYGHAFERQLSKLGSFNFKPN 270

Query: 60  NRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119
           NRRSGQMPLP EELRCPISLQLMYDPVII+SGQTYERICIEKW SDGH+TCPKTQQ+L H
Sbjct: 271 NRRSGQMPLPQEELRCPISLQLMYDPVIISSGQTYERICIEKWFSDGHNTCPKTQQQLSH 330

Query: 120 LCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNSKSNEIVRSCKL 178
           LCLTPNYCVKGLIASWCE NGV VPD PP+SLDLNYWRLALSE ESTNSKS + + SCK+
Sbjct: 331 LCLTPNYCVKGLIASWCEQNGVPVPDGPPESLDLNYWRLALSECESTNSKSMDSIGSCKM 390

Query: 179 KEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIV 238
           K +KVVPLE SG IEE E N++EN++ Q++ES  N FERY++FL +L+  E+L +KC + 
Sbjct: 391 KGVKVVPLEESGIIEEVEGNEMENVHEQDEES-ENXFERYENFLAILDGEEDLRKKCKVA 449

Query: 239 EQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298
           EQIR LLKDDEEAR F GANGFV AL+RFLE  V  RN  AQEIGAMALFNLAVNNNRNK
Sbjct: 450 EQIRHLLKDDEEARNFMGANGFVEALMRFLELXVRGRNEMAQEIGAMALFNLAVNNNRNK 509

Query: 299 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTE 358
           ELMLA GV+PLLE+MI NSNSHG+ATALYLNLS L++AKP+I +S AVPFL+ L   KTE
Sbjct: 510 ELMLAXGVLPLLEEMIPNSNSHGSATALYLNLSCLEEAKPMISTSQAVPFLIHLLGAKTE 569

Query: 359 HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASA 417
            QCKLDALHALYNLST P+NIPNLL+AGIISGL SL   P D  WTEK+LAV +NLA++ 
Sbjct: 570 PQCKLDALHALYNLSTHPANIPNLLAAGIISGLHSLLTDPADNTWTEKTLAVFVNLASNK 629

Query: 418 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS 477
            GK+E+   PGL+SGLAT+LD GE IEQEQAV CL +LCNG+EKC QMVLQEGVIPALVS
Sbjct: 630 LGKDEIMVAPGLISGLATILDVGEAIEQEQAVVCLLILCNGSEKCSQMVLQEGVIPALVS 689

Query: 478 ISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKL-----KPTYTPTPDHA 532
           ISVNG+ RG++KAQ+LLMLFREQRQRD  PV      + S+E +     KP  +   +  
Sbjct: 690 ISVNGTVRGKEKAQKLLMLFREQRQRDPSPVGSPHHTESSTEAVPGPESKPLESKALETK 749

Query: 533 P-ESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 564
           P ESKP CKSISRRK+GKA+++LWKSK+YSV Q
Sbjct: 750 PLESKPYCKSISRRKVGKAWNYLWKSKNYSVYQ 782

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100037|ref|XP_002311720.1| predicted protein [Populus trichocarpa] gi|222851540|gb|EEE89087.1| predicted protein [Populus trichocarpa]

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/573 (71%), Positives = 469/573 (81%), Gaps = 18/573 (3%)

Query: 1   MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNN 60
           M+KYSKLFRSE+ DDNDSQGS+PCSPT+Q S EDG   GN HAF+RQLSKL SFNF+P  
Sbjct: 211 MKKYSKLFRSELTDDNDSQGSSPCSPTVQGSLEDGGPGGNGHAFERQLSKLSSFNFKPTY 270

Query: 61  RRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 120
           R+SGQMPLPPEELRCPISL LMYDPVIIASGQTYERICIEKW SDGH TCPKTQQKL H 
Sbjct: 271 RKSGQMPLPPEELRCPISLHLMYDPVIIASGQTYERICIEKWFSDGHETCPKTQQKLSHR 330

Query: 121 CLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNS-KSNEIVRSCKL 178
           CLTPNYCVKGL+ASWCE NGV  PD PP+SLDLNYWRLA+S+ +S+NS +S E VRS KL
Sbjct: 331 CLTPNYCVKGLVASWCEQNGVPAPDGPPESLDLNYWRLAMSQFDSSNSRRSVESVRSGKL 390

Query: 179 KEMKVVPLEVSGTIEESEYNDIENIYAQEDES------GNNVFERYQDFLNVLNEGENLG 232
           K +KVVPLE SG IEE+E  + E + +Q+++S      G N+FE Y++FL +LN  E L 
Sbjct: 391 KGVKVVPLEESGPIEEAEEKN-EKLSSQQEDSMPEDAFGYNIFEIYKNFLAILNGDEELK 449

Query: 233 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 292
           +KC IVEQ+RLLLKDDEEAR+F GANGFV ALL+FLESAV   +  A+E GAMALFNL V
Sbjct: 450 KKCKIVEQVRLLLKDDEEARIFMGANGFVEALLQFLESAVRAGSPMAEEAGAMALFNLTV 509

Query: 293 NNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVEL 352
           NNNRN E+MLAAG IPLLE MISN +S G+ATALYLNLS LD+AK IIGSS AVPFLV++
Sbjct: 510 NNNRNNEMMLAAGAIPLLEVMISNPDSDGSATALYLNLSCLDEAKSIIGSSQAVPFLVQI 569

Query: 353 CKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLL 411
            KG+T  QCKLDALHALYNLS+  +NI NLLSAGIISGLQS LAVPGD  W EKS+AVL+
Sbjct: 570 LKGETGVQCKLDALHALYNLSSRSTNISNLLSAGIISGLQSLLAVPGDHAWIEKSIAVLI 629

Query: 412 NLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 471
           NLA+S + K+EM S PGL+SGLAT+LDT E IEQEQAV+CLF+LCNG+EK  ++VLQEGV
Sbjct: 630 NLASSQSAKDEMLSAPGLISGLATILDTVEPIEQEQAVACLFVLCNGSEKGSELVLQEGV 689

Query: 472 IPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDH 531
           IPALVSISVNG+TRG++KAQ+LLMLFREQRQRD P  ++  Q  +SS K  P        
Sbjct: 690 IPALVSISVNGTTRGKEKAQKLLMLFREQRQRDQPSAEVCFQRTESSSKSMP-------- 741

Query: 532 APESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 564
           APESKP CK +SRRKMGKA SF WKSKSYSV Q
Sbjct: 742 APESKPQCKPVSRRKMGKAISFFWKSKSYSVYQ 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566571|ref|XP_003551504.1| PREDICTED: U-box domain-containing protein 6-like [Glycine max]

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/567 (69%), Positives = 464/567 (81%), Gaps = 16/567 (2%)

Query: 1   MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNN 60
           MRKYSKLFRSE  DDNDSQGS PCSPT+Q S EDG+ +G+ HAFDRQLSKL SFNF+PNN
Sbjct: 211 MRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGIPSGHCHAFDRQLSKLSSFNFKPNN 270

Query: 61  RRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 120
           R+SGQM LPPEELRCPISLQLM DPVIIASGQTYER+CIEKW  DGH+TCPKTQQKL HL
Sbjct: 271 RKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHL 330

Query: 121 CLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNSKSNEIVRSCKLK 179
           CLTPNYCVKGL+ASWCE NGV +P+ PP+SLD NYWRLALS+ ESTNS+S   V SCKLK
Sbjct: 331 CLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDTESTNSRSVNSVGSCKLK 390

Query: 180 EMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVE 239
            +KVVP+E SG  E+   N  E+  AQE+++     E+Y  FL VL EG N  +KC +VE
Sbjct: 391 GVKVVPVEESGISEQMGGNATESFCAQEEDN-----EQYVSFLKVLTEGNNWKRKCKVVE 445

Query: 240 QIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 299
           Q+RLLL+DDEEAR+F GANGFV AL++FL+SAV E N+ A EIGAMALFNLAVNNNRNKE
Sbjct: 446 QLRLLLRDDEEARIFMGANGFVEALMQFLQSAVHEANAMALEIGAMALFNLAVNNNRNKE 505

Query: 300 LMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEH 359
           +M++ G++ LLE+MIS ++S+G A ALYLNLS LD AK +IG+S AV FL+++ + KTE 
Sbjct: 506 IMISTGILSLLEEMISKTSSYGCAVALYLNLSCLDKAKHMIGTSQAVQFLIQILEAKTEV 565

Query: 360 QCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAA 418
           QCK+D+LHALYNLST+PSNIPNLLS+GI+ GLQSL V  GD MWTEK +AVL+NLA   A
Sbjct: 566 QCKIDSLHALYNLSTVPSNIPNLLSSGIMDGLQSLLVDQGDCMWTEKCIAVLINLAVYQA 625

Query: 419 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI 478
           G+E+M   PGL+S LA+ LDTGE IEQEQA SCL +LCN +E+CCQMVLQEGVIPALVSI
Sbjct: 626 GREKMMLAPGLISALASTLDTGEPIEQEQAASCLLILCNRSEECCQMVLQEGVIPALVSI 685

Query: 479 SVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPESKPL 538
           SVNG++RGR+KAQ+LLM+FREQRQRDH PV I Q + +SS+   P         P++KPL
Sbjct: 686 SVNGTSRGREKAQKLLMVFREQRQRDHSPVKIDQPESESSDLSMP--------PPDTKPL 737

Query: 539 CKSISRRK-MGKAFSFLWKSKSYSVSQ 564
            K+ISRRK +GKAFSFLWKSKSYSV Q
Sbjct: 738 SKTISRRKVVGKAFSFLWKSKSYSVYQ 764

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540164|ref|XP_003538560.1| PREDICTED: U-box domain-containing protein 7-like [Glycine max]

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/566 (68%), Positives = 460/566 (81%), Gaps = 15/566 (2%)

Query: 1   MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNN 60
           MRKYSKLFRSE  DDNDSQGS PCSPT+Q S EDG+  G+ HAFDRQLSKL SFNF+PNN
Sbjct: 211 MRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGIPGGHCHAFDRQLSKLSSFNFKPNN 270

Query: 61  RRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 120
           R+SGQM LPPEELRCPISLQLM DPVIIASGQTYERICIEKW  DGH+TCPKTQQKL HL
Sbjct: 271 RKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERICIEKWFRDGHNTCPKTQQKLSHL 330

Query: 121 CLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNSKSNEIVRSCKLK 179
           CLTPNYCVKGL+ASWCE NGV +P+ PP+SLD NYWRLALS+ ESTNS+S   V SCKLK
Sbjct: 331 CLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDTESTNSRSVNSVSSCKLK 390

Query: 180 EMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVE 239
            +KVVP+E SG  E++  N  E+  AQE+++     ERY  FL VL EG N  +KC +VE
Sbjct: 391 GVKVVPVEESGISEQTGGNATESFSAQEEDN-----ERYLSFLKVLTEGNNWKRKCRVVE 445

Query: 240 QIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 299
           Q+RLLL+DDEEAR+F G NGFV AL++FL+SAV E N  A E GAMALFNLAVNNNRNKE
Sbjct: 446 QLRLLLRDDEEARIFMGTNGFVEALMQFLQSAVLEANVMALENGAMALFNLAVNNNRNKE 505

Query: 300 LMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEH 359
           +M+A G++ LLE+MIS ++S+G A ALYLNLS LD+AK +IG+S AV FL+++ + KTE 
Sbjct: 506 IMIATGILSLLEEMISKTSSYGCAVALYLNLSCLDEAKHVIGTSQAVQFLIQILQDKTEV 565

Query: 360 QCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAA 418
           QCK+D+LHALYNLST+PSNIPNLLS+GII  LQSL V  GD MWTEK +AVL+NLA S  
Sbjct: 566 QCKIDSLHALYNLSTVPSNIPNLLSSGIICSLQSLLVGQGDCMWTEKCIAVLINLAVSHV 625

Query: 419 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI 478
           G+E++   PGL+S LA+ LDTGE IEQEQA SCL +LCN +E+CC+MVLQEGVIPALVSI
Sbjct: 626 GREKLMLAPGLISALASTLDTGEPIEQEQAASCLLILCNRSEECCEMVLQEGVIPALVSI 685

Query: 479 SVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPESKPL 538
           SVNG++RGR+KAQ+LLM+FREQRQ+DH PV   Q++ +SS+   P         PE+K L
Sbjct: 686 SVNGTSRGREKAQKLLMVFREQRQQDHSPVKTDQRESESSDLSMP--------PPETKLL 737

Query: 539 CKSISRRKMGKAFSFLWKSKSYSVSQ 564
            KSISRRK+GKAFSFLWKSKSYSV Q
Sbjct: 738 SKSISRRKVGKAFSFLWKSKSYSVYQ 763

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450371|ref|XP_004142936.1| PREDICTED: U-box domain-containing protein 45-like [Cucumis sativus] gi|449494446|ref|XP_004159548.1| PREDICTED: U-box domain-containing protein 45-like [Cucumis sativus]

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/573 (64%), Positives = 449/573 (78%), Gaps = 15/573 (2%)

Query: 1   MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNN 60
           MRKYSKLFR+E+ DDNDSQGS PCSPT+Q S +D    GN  AF+RQL+K+ SF  +P  
Sbjct: 211 MRKYSKLFRTEVSDDNDSQGSGPCSPTVQGSLDDSGAGGNGQAFERQLTKIGSFTLKPKI 270

Query: 61  RRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 120
           R+  Q+PLPP+ELRCPISLQLMYDPVIIASGQTYERICIEKWL+DGH+TCPKTQQKL HL
Sbjct: 271 RKLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLNDGHNTCPKTQQKLSHL 330

Query: 121 CLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSEESTNSKSNEIVRSCKLKE 180
            LTPN+CVKGLIA+WCE  GV VPD PPDSLDLNYWRLALSEES +    + V SCKLK+
Sbjct: 331 SLTPNFCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLALSEESLDLSPVDSVGSCKLKD 390

Query: 181 MKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQ 240
           +KVVP++ +   EE + N++++  A+++ES  N+  R++ +L VLN+  ++ +K  +VEQ
Sbjct: 391 VKVVPVDENSVTEEIKGNEVDDNSAEDEESNVNMLARHEQYLKVLNDEVDMKKKSAMVEQ 450

Query: 241 IRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 300
           IRLLLKDDEEAR+  GANGFV  LLR+LE AV E+N+ AQE GAMALFNLAVNN+RNKE+
Sbjct: 451 IRLLLKDDEEARISMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEI 510

Query: 301 MLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQ 360
           MLA GVI LLE MI N NSHG ATALYLN+S L++AK IIGSS AVPFL +L    TE  
Sbjct: 511 MLAEGVISLLEDMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETL 570

Query: 361 CKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAG 419
           CKLDALH LYNLST+PSNIPNL+S+GII GLQ+ LA   D  WTEK +A+L+NLA++ +G
Sbjct: 571 CKLDALHTLYNLSTVPSNIPNLISSGIIKGLQALLAARLDRTWTEKCIAILINLASTESG 630

Query: 420 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS 479
           +++M+STP L+SGLA +LD GE IEQEQAV+CL +LCNGNE+C +MVLQEGVIP LVS+S
Sbjct: 631 RDQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSMS 690

Query: 480 VNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPD--------H 531
           VNG+ RG++KAQ+LLMLFREQRQR+            ++  L PT  PT           
Sbjct: 691 VNGTARGKEKAQKLLMLFREQRQRE------SPPAPPTAPTLIPTPIPTDQSESGGTSMD 744

Query: 532 APESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 564
             ESKPLCKSISRRK GKA SFLWKSKSYSV Q
Sbjct: 745 VAESKPLCKSISRRKPGKALSFLWKSKSYSVYQ 777

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463053|ref|XP_003601808.1| U-box domain-containing protein [Medicago truncatula] gi|355490856|gb|AES72059.1| U-box domain-containing protein [Medicago truncatula]

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/566 (66%), Positives = 446/566 (78%), Gaps = 14/566 (2%)

Query: 1   MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNN 60
           MRKYSKLFRSE  DDNDSQGS PCSPT+Q    + V  G+   FDRQ+SKL SFNF+PNN
Sbjct: 212 MRKYSKLFRSEFSDDNDSQGSQPCSPTVQSCSPNVVPGGHCQVFDRQISKLGSFNFKPNN 271

Query: 61  RRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 120
           ++SGQMPLPPEELRCPISLQLM DPVIIASGQTYER CIEKW +DGH+TCPKTQQKL HL
Sbjct: 272 KKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFNDGHNTCPKTQQKLAHL 331

Query: 121 CLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNSKSNEIVRSCKLK 179
            LTPNYCVKGL+ASWCE N + +P+ PP+SLD NYWRLALS+ ES NS+S   V SCKLK
Sbjct: 332 SLTPNYCVKGLVASWCEQNRIPIPEGPPESLDFNYWRLALSDSESINSRSVNSVNSCKLK 391

Query: 180 EMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVE 239
            +KVVPLE +  +E++E N  E+  AQE+E      E+Y   L VL EG N  +KC +VE
Sbjct: 392 GVKVVPLEENSILEKTEGNVTESFSAQEEEDS----EKYLSLLKVLTEGNNWKRKCKVVE 447

Query: 240 QIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 299
           Q+RLLL+DDEEAR+F GANGFV AL +FL+SAV E N+ A E GAMALFNLAVNNNRNKE
Sbjct: 448 QLRLLLRDDEEARIFMGANGFVEALFQFLQSAVHEGNAMALENGAMALFNLAVNNNRNKE 507

Query: 300 LMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEH 359
           LM++AG++ LLE+MIS ++S+  ATALYLNLS L++AK +IG S AV FL+++   K E 
Sbjct: 508 LMISAGILSLLEEMISCTSSYSCATALYLNLSCLEEAKHMIGVSQAVQFLIQMLGTKIEV 567

Query: 360 QCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAA 418
           QCKLDALHALYN+ST+PSNI NLLS+GII+GLQSL V   +  WTEK +AVL+NLA S  
Sbjct: 568 QCKLDALHALYNISTVPSNISNLLSSGIINGLQSLLVGQAECSWTEKCIAVLVNLAVSHE 627

Query: 419 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI 478
           G+EEM   P L+S LA++LDTGE IEQEQAVSCL +LCN +EKCC+MVLQEG IPALVSI
Sbjct: 628 GREEMMLNPELISTLASILDTGESIEQEQAVSCLLILCNRSEKCCEMVLQEGAIPALVSI 687

Query: 479 SVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPESKPL 538
           +VNG++RGR+KAQ+LLMLFREQRQRDH P +     D S E    +  P      E+KPL
Sbjct: 688 TVNGTSRGREKAQKLLMLFREQRQRDHSPANT---QDCSPEAGDLSMPPR-----ETKPL 739

Query: 539 CKSISRRKMGKAFSFLWKSKSYSVSQ 564
            KSISRRK+GKA SFLWKSKSYSV Q
Sbjct: 740 SKSISRRKVGKALSFLWKSKSYSVYQ 765

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525144|ref|XP_003531187.1| PREDICTED: U-box domain-containing protein 6-like [Glycine max]

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/568 (66%), Positives = 447/568 (78%), Gaps = 18/568 (3%)

Query: 1   MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNN 60
           MRKYSKLFR+E  DDNDSQGS PCSP++Q S ED V   +  AFDRQLSKL  FNF+PNN
Sbjct: 212 MRKYSKLFRNEFSDDNDSQGSAPCSPSVQGSIEDSVPGSHCQAFDRQLSKLSCFNFKPNN 271

Query: 61  -RRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119
            R+SGQMPLPPEELRCPISLQLMYDPV IASGQTYER+ IEKW SDGH+ CPKTQQKL H
Sbjct: 272 SRKSGQMPLPPEELRCPISLQLMYDPVTIASGQTYERVWIEKWFSDGHNNCPKTQQKLSH 331

Query: 120 LCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNSKSNEIVRSCKL 178
           LCLTPNYCVKGL+ASWCE NGV +P+ PP+SLDLNYW + LSE ESTNSKS + V  CKL
Sbjct: 332 LCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWGMVLSESESTNSKSIDSVSYCKL 391

Query: 179 KEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIV 238
           K + VVPLE SG  EE   N  E++ AQE++S     E+Y  FL VL EG N  ++C +V
Sbjct: 392 KGVLVVPLEESGISEEYVENGTESVSAQEEDS-----EQYFSFLKVLTEGNNWRKQCEVV 446

Query: 239 EQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298
           EQ+RLLL+DDEEAR+F GANGFV ALL+FL+SA+ E +  A E GAMALFNLAVNNNRNK
Sbjct: 447 EQLRLLLRDDEEARIFMGANGFVEALLQFLQSALREGSLMALESGAMALFNLAVNNNRNK 506

Query: 299 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTE 358
           E+ML+AGV+ LLE+MIS ++S+G  TALYLNLS L++AKP+IG + AV FL++L +  ++
Sbjct: 507 EIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGVTQAVQFLIQLLQSDSD 566

Query: 359 HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASA 417
            QCK D+LHALYNLST+PSNIP LLS GIISGLQSL V  GD +WTEK +AVL+NLA S 
Sbjct: 567 VQCKQDSLHALYNLSTVPSNIPCLLSFGIISGLQSLLVGEGDSIWTEKCVAVLINLATSQ 626

Query: 418 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS 477
            G+EE+ STPGL+  LA++LDTGELIEQEQAVSCL +LCN +E+C +MVLQEGVIPALVS
Sbjct: 627 VGREEIVSTPGLIGALASILDTGELIEQEQAVSCLLILCNRSEECSEMVLQEGVIPALVS 686

Query: 478 ISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAP-ESK 536
           ISVNG+ RG++KAQ+LLMLFREQR RD  PV         + K  P         P E K
Sbjct: 687 ISVNGTPRGQEKAQKLLMLFREQR-RDPSPVK--------THKCPPETASDLSMPPAEMK 737

Query: 537 PLCKSISRRKMGKAFSFLWKSKSYSVSQ 564
           P+CKSI RRK G+AFSF WK+KSYSV Q
Sbjct: 738 PICKSILRRKSGRAFSFFWKNKSYSVYQ 765

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	565
TAIR|locus:2032472	771	AT1G24330 [Arabidopsis thalian	0.980	0.718	0.647	1.5e-184
TAIR|locus:2010424	768	PUB45 "plant U-box 45" [Arabid	0.976	0.718	0.636	6.8e-182
TAIR|locus:2008813	782	AT1G67530 [Arabidopsis thalian	0.982	0.709	0.621	4.1e-175
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.208	0.178	0.478	3.9e-45
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.447	0.305	0.335	1.5e-44
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.132	0.108	0.626	1.9e-40
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.141	0.126	0.612	6.1e-39
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.277	0.256	0.354	1e-36
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.656	0.607	0.281	1.8e-27
TAIR|locus:2158252	707	AT5G67340 [Arabidopsis thalian	0.709	0.567	0.283	1.5e-25

TAIR|locus:2032472 AT1G24330 [Arabidopsis thaliana (taxid:3702)]

 Score = 1790 (635.2 bits), Expect = 1.5e-184, P = 1.5e-184
 Identities = 367/567 (64%), Positives = 428/567 (75%)

Query:     1 MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRP-N 59
             MRKYSKLFRSEM+D+NDS  STPCSPT Q   ED V+     AF RQLSK  S N++P N
Sbjct:   211 MRKYSKLFRSEMMDENDSPCSTPCSPTGQGPNEDRVN-----AFGRQLSKFGSINYKPMN 265

Query:    60 NRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119
             +R+SGQMP+PPEELRCPISLQLMYDPVIIASGQTYER+CIEKW SDGH++CPKTQQ+LPH
Sbjct:   266 SRKSGQMPIPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLPH 325

Query:   120 LCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNSKSNEIVRSCKL 178
             L LTPNYCVKGLIASWCE NG++VP  PP+SLDLNYWRLA+S+ ES NSKS + V  C  
Sbjct:   326 LSLTPNYCVKGLIASWCEQNGITVPTGPPESLDLNYWRLAMSDSESPNSKSVDSVGLCTP 385

Query:   179 KEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIV 238
             K+++VVPLE S TIE       +N    E +S  NV E YQD L ++++ E+L +KC +V
Sbjct:   386 KDIRVVPLEESSTIESERQQKEKNNAPDEVDSEINVLEGYQDILAIVDKEEDLAKKCKVV 445

Query:   239 EQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298
             E +R+LLKD+EEAR+  GANGFV A L+FLESAV + N+ AQE GAMALFNLAVNNNRNK
Sbjct:   446 ENVRILLKDNEEARILMGANGFVEAFLQFLESAVHDNNAAAQETGAMALFNLAVNNNRNK 505

Query:   299 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTE 358
             ELML +GVIPLLEKMIS S S G ATALYLNLS L+ AKP+IGSS AV F V L    T+
Sbjct:   506 ELMLTSGVIPLLEKMISCSQSQGPATALYLNLSCLEKAKPVIGSSQAVSFFVNLLLQDTK 565

Query:   359 HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKXXXXXXXXXXXXX 418
              QCKLDALHALYNLST   NIP LLS+ II  LQ LA  G+ +W EK             
Sbjct:   566 TQCKLDALHALYNLSTYSPNIPTLLSSNIIKSLQVLASTGNHLWIEKSLAVLLNLASSRE 625

Query:   419 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI 478
             GKEEM +T G++S LATVLDTG+ +EQEQAVSCL +LC G+E C QMVLQEGVIP+LVSI
Sbjct:   626 GKEEMITTQGMISTLATVLDTGDTVEQEQAVSCLVILCTGSESCIQMVLQEGVIPSLVSI 685

Query:   479 SVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPES--K 536
             SVNGS RGRDK+Q+LLMLFREQR RD P  +  +++        P   P P  APES  K
Sbjct:   686 SVNGSPRGRDKSQKLLMLFREQRHRDQPSPN--KEEAPRKTVSAPMAIPAPVSAPESEVK 743

Query:   537 PLCKSISRRK-MGKAFSFLWKSKSYSV 562
             PL KSISRRK M + FSFLWK KS+S+
Sbjct:   744 PLTKSISRRKTMTRPFSFLWK-KSHSI 769

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2010424 PUB45 "plant U-box 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 1765 (626.4 bits), Expect = 6.8e-182, P = 6.8e-182
 Identities = 362/569 (63%), Positives = 434/569 (76%)

Query:     1 MRKYSKLFRSEMIDDNDSQGST--PCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRP 58
             MRKYSKLFRSE+ DDNDSQGS+  PCSPTIQ S +D  H     AFDRQLSKL SFNFR 
Sbjct:   211 MRKYSKLFRSEIWDDNDSQGSSSLPCSPTIQGSIDDA-HG---RAFDRQLSKLSSFNFRS 266

Query:    59 --NNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQK 116
               NNRRS QM +PPEELRCPISLQLMYDPVIIASGQTYERICIEKW SDGH+TCPKT Q+
Sbjct:   267 CNNNRRSSQMSVPPEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQ 326

Query:   117 LPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALS-EESTNSKSNEIVRS 175
             L HLCLTPNYCVK LI+SWCE NGV VPD PP+SLDLNYWRLALS  EST+++S + V S
Sbjct:   327 LSHLCLTPNYCVKALISSWCEQNGVQVPDGPPESLDLNYWRLALSVSESTDTRSAKRVGS 386

Query:   176 CKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKC 235
             CKLK++KVVPLE SGTI+E      E+ Y QED+    + ER  + L  L + + L +KC
Sbjct:   387 CKLKDVKVVPLEESGTIKEEA---CESEY-QEDQV--TLVERCTELLTTLTDVDTLRKKC 440

Query:   236 NIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295
              +VEQIR+LLKDDEEAR+  G NG V ALL+FL SA+ E N+ AQ++GAMALFNLAV+NN
Sbjct:   441 RVVEQIRVLLKDDEEARILMGENGCVEALLQFLGSALNENNASAQKVGAMALFNLAVDNN 500

Query:   296 RNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG 355
             RNKELMLA+G+IPLLE+M+ N +SHG+ TA+YLNLS L++AKP+IGSS AVPF+V L   
Sbjct:   501 RNKELMLASGIIPLLEEMLCNPHSHGSVTAIYLNLSCLEEAKPVIGSSLAVPFMVNLLWT 560

Query:   356 KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKXXXXXXXXXX 415
             +TE QCK+DALH+L++LST P NIP LLSA +++ LQSL +  +  WTEK          
Sbjct:   561 ETEVQCKVDALHSLFHLSTYPPNIPCLLSADLVNALQSLTISDEQRWTEKSLAVLLNLVL 620

Query:   416 XXXGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPAL 475
                GK+EM S P LVS L T+LDTGE  EQEQAVS L +LCN +E C +MVLQEGVIP+L
Sbjct:   621 NEAGKDEMVSAPSLVSNLCTILDTGEPNEQEQAVSLLLILCNHSEICSEMVLQEGVIPSL 680

Query:   476 VSISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPES 535
             VSISVNG+ RGR++AQ+LL LFRE RQRD   +   Q  + +S +    ++       E+
Sbjct:   681 VSISVNGTQRGRERAQKLLTLFRELRQRDQTHLTEPQHTEVTSPE--DGFSVASAAVTET 738

Query:   536 KPLCKSISRRKMGKAFSFLWKSKSYSVSQ 564
             KP CKS SR+KMG+AFSFLWKSKS+SV Q
Sbjct:   739 KPQCKSASRKKMGRAFSFLWKSKSFSVYQ 767

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

TAIR|locus:2008813 AT1G67530 [Arabidopsis thaliana (taxid:3702)]

 Score = 1701 (603.8 bits), Expect = 4.1e-175, P = 4.1e-175
 Identities = 361/581 (62%), Positives = 426/581 (73%)

Query:     1 MRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRP-N 59
             MRK SKLFRSE++D+NDS GS PCSP      ED   +G+ H F RQLS+  S N +P N
Sbjct:   211 MRKCSKLFRSEILDENDSPGSYPCSPN-----ED---HGSVHGFGRQLSRFGSLNDKPMN 262

Query:    60 NRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119
             +  SGQMP+PPEELRCPISLQLM DPVIIASGQTYER+CIEKW SDGH+TCPKTQQ+LPH
Sbjct:   263 SINSGQMPVPPEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQLPH 322

Query:   120 LCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSE-ESTNSKSNEIVRSCKL 178
             + LTPN CVKGLIASWCE NG  +P  PP+S DL+YWRLALS+ EST S+S   + S KL
Sbjct:   323 ISLTPNNCVKGLIASWCEQNGTQIPSGPPESQDLDYWRLALSDSESTKSQSVNSIGSYKL 382

Query:   179 KEMKVVPLEVSGTIEESEYNDIENIYAQEDE---SGNNVFERYQDFLNVLNEGENLGQKC 235
             K +K+VPLE +GT      N  E+  + +D+   S  NV ERYQD L VLNE E L +KC
Sbjct:   383 KGVKIVPLEENGTTVVERQNTEESFVSDDDDEEDSDINVLERYQDLLAVLNEEEGLEKKC 442

Query:   236 NIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295
              +VE+IRLLLKDDEEAR+F GANGFV ALLRFL SAV + N+ AQ+ GAMALFNLAVNNN
Sbjct:   443 KVVEKIRLLLKDDEEARIFMGANGFVEALLRFLGSAVDDNNAAAQDSGAMALFNLAVNNN 502

Query:   296 RNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG 355
             RNKELML +GVI LLEKMIS++ SHG+ATALYLNLS LD+AK +IGSS AVPFLV+L + 
Sbjct:   503 RNKELMLTSGVIRLLEKMISSAESHGSATALYLNLSCLDEAKSVIGSSQAVPFLVQLLQK 562

Query:   356 KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSL-AVPGDPMWTEKXXXXXXXXX 414
             + E QCKLDALHALYNLST   NIP LLS+ II  LQ L A  G+ +W EK         
Sbjct:   563 EIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGENLWIEKSLAVLLNLA 622

Query:   415 XXXXGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPA 474
                 GK+E  S+ G++S LATVLD G+  EQEQAVSCL +LCNG E C QMVLQEGVIP+
Sbjct:   623 SSQEGKDEAVSSQGMISSLATVLDMGDTTEQEQAVSCLLILCNGRESCIQMVLQEGVIPS 682

Query:   475 LVSISVNGSTRGRDKAQRLLMLFREQRQ-RDHPPV--DIGQQDDDSSEKLK-P--TYTPT 528
             LVSISVNG+ RGR+K+Q+LLMLFRE+RQ RD P    D   Q + + + L  P   +  T
Sbjct:   683 LVSISVNGTPRGREKSQKLLMLFREERQQRDQPSSNRDEPPQKEPARKSLSAPLSVHGST 742

Query:   529 PDHAP----ESKPLCKSISRRK-MGKAFSFLWKSKSYSVSQ 564
             P  A     E + L KS+SRRK M + FSF WK KSYSV +
Sbjct:   743 PASASVQDYEPRVLSKSMSRRKSMARPFSFFWK-KSYSVRE 782

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 3.9e-45, Sum P(2) = 3.9e-45
 Identities = 57/119 (47%), Positives = 80/119 (67%)

Query:    33 EDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQ 92
             +D V   +++  ++++      N + +   S ++P+ P++ RCPISL++M DPVI++SGQ
Sbjct:   220 KDFVQTEDDNGEEQKVGVNSRSNGQTSTAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQ 279

Query:    93 TYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSL 151
             TYER CIEKW+  GHSTCPKTQQ L    LTPNY ++ LIA WCE N +  P  PP SL
Sbjct:   280 TYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLRSLIAQWCEANDIE-PPKPPSSL 337

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
 Identities = 89/265 (33%), Positives = 134/265 (50%)

Query:   240 QIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 299
             ++RLL K + + R+  G +G +V L+  L S     +S  QE    AL NL++N+N  K 
Sbjct:   567 ELRLLAKHNMDNRIVIGNSGAIVLLVELLYST----DSATQENAVTALLNLSINDNNKKA 622

Query:   300 LMLAAGVIPL---LEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK 356
             +  A  + PL   LE   S +  + AAT L+ +LS +++ K  IG S A+  LV+L  G 
Sbjct:   623 IADAGAIEPLIHVLENGSSEAKENSAAT-LF-SLSVIEENKIKIGQSGAIGPLVDLL-GN 679

Query:   357 TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKXXXXXXXXXXX 416
                + K DA  AL+NLS    N   ++ +G +  L  L  P   M  +K           
Sbjct:   680 GTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGM-VDKAVAVLANLATI 738

Query:   417 XXGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALV 476
               G+  +    G+   L  V++ G    +E A + L  L   + + C MVLQEG +P LV
Sbjct:   739 PEGRNAIGQEGGIPL-LVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLV 797

Query:   477 SISVNGSTRGRDKAQRLLMLFREQR 501
             ++S +G+ R R+KAQ LL  FR QR
Sbjct:   798 ALSQSGTPRAREKAQALLSYFRNQR 822

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 283 (104.7 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
 Identities = 47/75 (62%), Positives = 59/75 (78%)

Query:    70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
             P+E RCPISL+LM DPVI+++GQTYER CIEKW++ GH TCP TQQK+    LTPNY ++
Sbjct:   274 PDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLR 333

Query:   130 GLIASWCEMNGVSVP 144
              LI+ WCE NG+  P
Sbjct:   334 SLISQWCETNGMEPP 348

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
 Identities = 49/80 (61%), Positives = 61/80 (76%)

Query:    67 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 126
             P+ PE  RCPISL+LM DPVI+++GQTYER  I+KWL  GH TCPK+Q+ L H  LTPNY
Sbjct:   246 PVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 305

Query:   127 CVKGLIASWCEMNGVSVPDS 146
              +K LIA WCE NG+ +P +
Sbjct:   306 VLKSLIALWCESNGIELPQN 325

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 61/172 (35%), Positives = 96/172 (55%)

Query:    14 DDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEEL 73
             ++ + Q S P   +   S     +   +   DR L K+ + N    +++S ++ +P + L
Sbjct:   191 EEEEKQSSPPLRRSSSISL--AYYLSKDADTDR-LDKMVNKN-TDESKKSDKLTIPVDFL 246

Query:    74 RCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIA 133
              CP+SL+LM DPVI+A+GQTYER  I++W+  G+ TCPKTQQKL +  LTPNY ++ LI+
Sbjct:   247 -CPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLRSLIS 305

Query:   134 SWCEMNGVSVPDS-----PPDSLDLNYWRLA---LSEESTNSKSNEI--VRS 175
              WC  + +  P         +S D++  R     LS  ST  + N +  +RS
Sbjct:   306 RWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRS 357

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 333 (122.3 bits), Expect = 1.8e-27, P = 1.8e-27
 Identities = 113/401 (28%), Positives = 178/401 (44%)

Query:    67 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 126
             P+ P+E RCPISL+LM DPVI++SGQTYER CI+KWL  GH TCPKTQQ L H  LTPN+
Sbjct:   226 PIIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNF 285

Query:   127 CVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLA-LSEESTNSKSNEIVRSCKLKEMKVVP 185
              +K LI+ WCE NG+ +P +  +S D    + +        S  N + RS    E +   
Sbjct:   286 VLKSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRL-RSGNQDEQRAAA 344

Query:   186 LEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLL 245
              E+    + +  N I    A   E+G          +N+L+  +   Q+  +   + L +
Sbjct:   345 GEIRLLAKRNVNNRI--CIA---EAGAIPL-----LVNLLSSSDPRTQEHAVTALLNLSI 394

Query:   246 KDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAG 305
              ++ +A +    +  +  ++  L++   E     +E  A  LF+L+V +     +  A  
Sbjct:   395 HENNKASIVD--SHAIPKIVEVLKTGSME----TRENAAATLFSLSVVDENKVTIGAAGA 448

Query:   306 VIPLLEKMISNS--NSHGAATALYLNLSFLDDAKPIIGSS----HAVPFLVELCKGKTEH 359
             + PL+  +   S      AATA++ NL      K     +    H + FLV+   G  + 
Sbjct:   449 IPPLINLLCDGSPRGKKDAATAIF-NLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMID- 506

Query:   360 QCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKXXXXXXXXXXXXXG 419
                 +AL  L  L+  P     +  +  I  L  +   G P   E               
Sbjct:   507 ----EALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTE 562

Query:   420 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE 460
             +       G+   L  + +TG    + +A S L L+   NE
Sbjct:   563 QTLAAKAAGVEDALKELSETGTDRAKRKASSILELMHQANE 603

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 124/437 (28%), Positives = 193/437 (44%)

Query:    70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
             P + RC +SL+LM DPVI+ASGQT+ER+ I+KW+  G   CPKT+Q L H  LTPN+ V+
Sbjct:   241 PSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLTPNFIVR 300

Query:   130 GLIASWCEMNGVSVPDSPPDSLDLNYWR--LALSEESTNSKSNEIVRSCKL--KEMKVV- 184
               +ASWCE N V     PPD L+L +      L  ES  + S+E   S  L  +E++ V 
Sbjct:   301 AFLASWCETNNVY----PPDPLELIHSSEPFPLLVESVRASSSENGHSESLDAEELRQVF 356

Query:   185 --PLEVSGTIEESEYNDIENIYAQEDES--GNNVFERYQDFLNVLNEGENLGQKCNIVEQ 240
                    G + E       N  A  D S   +N   ++ +  +  + G        I   
Sbjct:   357 SRSASAPGIVSEVVCKTKRNNNAAADRSLTRSNTPWKFPEERHWRHPGI-------IPAT 409

Query:   241 IRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 300
             +R       E    TG++  +   ++ L   +   +   Q      +  LA N+  N+ +
Sbjct:   410 VR-------E----TGSSSSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIV 458

Query:   301 MLAAGVIPLLEKMISNSNSHGAATAL--YLNLSFLDDAKPIIGSSHAVPFLVELCKGKTE 358
             +     IP L  ++ +++    A A+   LNLS  D+ K +I  S A+  L+ + K    
Sbjct:   459 IARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYL 518

Query:   359 HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKXXXXXXXXXXXXX 418
              + K ++   L++LS I      +  AG I  L  L   G     +              
Sbjct:   519 EEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHE 578

Query:   419 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI 478
              K ++    G V  L  ++D    +  E+AV  L  L    E     + +EG IP LV +
Sbjct:   579 NKTKVIEA-GAVRYLVELMDPAFGMV-EKAVVVLANLATVREGKIA-IGEEGGIPVLVEV 635

Query:   479 SVNGSTRGRDKAQRLLM 495
                GS RG++ A   L+
Sbjct:   636 VELGSARGKENATAALL 652

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O48700	PUB6_ARATH	6, ., 3, ., 2, ., -	0.6649	0.9805	0.7185	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_X4827 hypothetical protein (787 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	565
smart00504	63	smart00504, Ubox, Modified RING finger domain	9e-27
pfam04564	73	pfam04564, U-box, U-box domain	1e-19
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-07
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-05
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	3e-04
pfam05804	708	pfam05804, KAP, Kinesin-associated protein (KAP)	0.001

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score =  102 bits (257), Expect = 9e-27
 Identities = 36/64 (56%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 72  ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGL 131
           E  CPISL++M DPVI+ SGQTYER  IEKWL   H T P T Q L H  L PN  +K  
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSA 59

Query: 132 IASW 135
           I  W
Sbjct: 60  IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 82.7 bits (205), Expect = 1e-19
 Identities = 32/70 (45%), Positives = 42/70 (60%)

Query: 70  PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
           P+E   PI+L+LM DPVI+ SG TY+R  IE+ L     T P T++ L H  L PN  +K
Sbjct: 2   PDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLELK 61

Query: 130 GLIASWCEMN 139
             I +W E N
Sbjct: 62  EKIDAWLEEN 71

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 9/101 (8%)

Query: 258 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS 317
            G + AL+  L S     +   Q   A AL NL+  NN N + ++ AG +P L +++ + 
Sbjct: 6   AGGLPALVSLLSS----SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 318 NSH---GAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCK 354
           +      A  AL  NL+   +D K I+  +  VP LV L  
Sbjct: 62  DEEVVKAALWALR-NLAAGPEDNKLIVLEAGGVPKLVNLLD 101

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 7/122 (5%)

Query: 299 ELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSF-LDDAKPIIGSSHAVPFLVELCK 354
           E ++ AG +P L  ++S+S+      AA AL  NLS   +D    +  +  +P LV+L K
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWAL-SNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 355 GKTEHQCKLDALHALYNLSTIPSNIPN-LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 413
              + +    AL AL NL+  P +    +L AG +  L +L    +    + +   L NL
Sbjct: 60  -SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 414 AA 415
           A+
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 71  EELRCPISLQLMYD----PVIIASGQTYERICIEKWLSDGHS-TCP 111
               CPIS ++M D    PV++  G  Y R  +EK   +G    CP
Sbjct: 9   SIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP)

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 256 GANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-NNRNKELMLAAGVIPLLEKMI 314
             NG +  LL+      C+       I    LFNL+ +   R K  M+  G++P L  ++
Sbjct: 324 EENGIIEKLLKLFP---CQHEDLLN-ITLRLLFNLSFDTGLRPK--MVNGGLLPKLVSLL 377

Query: 315 SNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 373
            N N HG A  +  +LS  D AK +   +  +P L+++    T  +  L+ +    NL+
Sbjct: 378 DNDNHHGIALCVLYHLSCDDKAKSMFAYTDCIPMLMKMVLEGTGERVDLELIALCINLA 436

This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	565
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.95
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.94
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.93
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.93
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.92
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.88
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.87
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.87
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.81
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.81
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.77
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.71
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.69
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.67
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.63
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.62
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.55
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.46
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.43
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.41
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.35
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.3
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.2
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.2
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.18
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.16
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.12
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.08
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.06
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.96
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.95
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.87
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.85
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.84
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	98.81
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.79
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.77
PRK09687	280	putative lyase; Provisional	98.75
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	98.71
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.68
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.68
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.67
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.62
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.61
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.58
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.51
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.49
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.46
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.45
PHA02929	238	N1R/p28-like protein; Provisional	98.43
PRK09687	280	putative lyase; Provisional	98.42
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.4
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.38
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.37
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.34
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.33
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.31
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.31
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.29
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.27
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.25
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.23
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.17
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.17
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.15
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.1
KOG0289	506	consensus mRNA splicing factor [General function p	98.09
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.08
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.05
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.01
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.98
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.96
PHA02926	242	zinc finger-like protein; Provisional	97.92
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.91
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.9
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.9
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.87
PF05536	543	Neurochondrin: Neurochondrin	97.85
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.85
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.84
PF14634	44	zf-RING_5: zinc-RING finger domain	97.79
PF05536	543	Neurochondrin: Neurochondrin	97.75
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.73
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.71
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.65
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.61
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.58
PTZ00429	746	beta-adaptin; Provisional	97.55
KOG2660	331	consensus Locus-specific chromosome binding protei	97.55
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.53
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.51
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.5
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.47
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.44
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.42
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.39
PTZ00429	746	beta-adaptin; Provisional	97.35
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.33
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.32
TIGR02270	410	conserved hypothetical protein. Members are found	97.3
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.23
COG5369	743	Uncharacterized conserved protein [Function unknow	97.19
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.19
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.15
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.15
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.1
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.87
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.83
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.83
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.76
COG5369	743	Uncharacterized conserved protein [Function unknow	96.72
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.69
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.62
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.62
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.61
PF04641	260	Rtf2: Rtf2 RING-finger	96.56
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	96.56
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	96.53
KOG3036	293	consensus Protein involved in cell differentiation	96.51
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.5
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.49
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.49
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.47
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.46
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	96.42
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.3
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.26
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.21
COG5152	259	Uncharacterized conserved protein, contains RING a	96.19
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.16
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.15
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.14
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.12
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.1
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.08
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.05
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.03
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.01
KOG4413	524	consensus 26S proteasome regulatory complex, subun	95.98
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.97
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.96
COG1413	335	FOG: HEAT repeat [Energy production and conversion	95.95
KOG2979	262	consensus Protein involved in DNA repair [General	95.94
TIGR02270	410	conserved hypothetical protein. Members are found	95.89
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.87
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	95.79
COG1413	335	FOG: HEAT repeat [Energy production and conversion	95.76
KOG4367	699	consensus Predicted Zn-finger protein [Function un	95.71
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.58
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	95.25
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.24
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	95.22
KOG0212	675	consensus Uncharacterized conserved protein [Funct	95.17
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.13
KOG3113	293	consensus Uncharacterized conserved protein [Funct	94.91
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.89
KOG3036	293	consensus Protein involved in cell differentiation	94.88
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.63
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.62
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.61
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.55
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.45
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	94.43
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.23
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.15
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.0
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	93.97
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	93.85
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.75
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.7
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.46
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.34
KOG2259	823	consensus Uncharacterized conserved protein [Funct	93.3
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	93.13
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	93.02
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	93.02
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	93.0
KOG2259	823	consensus Uncharacterized conserved protein [Funct	92.92
COG5096	757	Vesicle coat complex, various subunits [Intracellu	92.84
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	92.84
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	92.79
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	92.7
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	92.67
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	92.67
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.34
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	92.32
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	92.28
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	92.23
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	92.17
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	92.14
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	91.99
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	91.92
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	91.66
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	91.64
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	91.62
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	91.47
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	90.85
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	90.76
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	90.75
PF08045	257	CDC14: Cell division control protein 14, SIN compo	90.67
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	90.63
COG5109	396	Uncharacterized conserved protein, contains RING Z	90.19
COG5096	757	Vesicle coat complex, various subunits [Intracellu	90.11
KOG1824	1233	consensus TATA-binding protein-interacting protein	89.92
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	89.74
KOG2137	700	consensus Protein kinase [Signal transduction mech	89.64
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	89.63
PF05004	309	IFRD: Interferon-related developmental regulator (	89.62
KOG0825	1134	consensus PHD Zn-finger protein [General function	89.01
PF05004	309	IFRD: Interferon-related developmental regulator (	88.77
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	88.46
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	88.46
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	88.35
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	88.31
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	88.25
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	88.19
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	87.94
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	87.88
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	87.87
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	87.63
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	87.58
KOG1001	674	consensus Helicase-like transcription factor HLTF/	87.46
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	87.44
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	87.31
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	87.15
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	86.86
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	86.84
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.72
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.72
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	86.46
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	86.27
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	86.23
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	86.22
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	86.18
PF08045	257	CDC14: Cell division control protein 14, SIN compo	86.13
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	86.03
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	85.35
KOG4653	982	consensus Uncharacterized conserved protein [Funct	84.61
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	84.33
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	84.11
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	84.08
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	84.08
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	83.83
COG5219	1525	Uncharacterized conserved protein, contains RING Z	83.64
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	83.6
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	83.49
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	83.43
KOG0396	389	consensus Uncharacterized conserved protein [Funct	83.36
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	83.03
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	82.23
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	81.71
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	81.68
PF04641	260	Rtf2: Rtf2 RING-finger	81.35
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	81.3
COG5098	1128	Chromosome condensation complex Condensin, subunit	81.18
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	80.86
PRK14707	2710	hypothetical protein; Provisional	80.32
KOG0567	289	consensus HEAT repeat-containing protein [General	80.21
KOG0301	745	consensus Phospholipase A2-activating protein (con	80.18
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	80.03

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.95  E-value=7.1e-26  Score=270.08  Aligned_cols=280  Identities=21%  Similarity=0.191  Sum_probs=244.2

Q ss_pred             hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc
Q 008437          216 ERYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN  293 (565)
Q Consensus       216 e~i~~ll~~L~s~-~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~  293 (565)
                      ..+..+++.|.++ .+.+.|..|+..|+.+++.++++|..+++ .|+||.|+.+|.+    ++..+|++|+.+|.+|+. 
T Consensus        13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s----g~~~vk~nAaaaL~nLS~-   87 (2102)
T PLN03200         13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS----GTLGAKVNAAAVLGVLCK-   87 (2102)
T ss_pred             HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhc-
Confidence            5678899999865 25788999999999999999999999996 9999999999987    689999999999999996 


Q ss_pred             CchhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC---CCCchhh-ccCCchHHHHHHhcCCC--CHHHHHHH
Q 008437          294 NNRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL---DDAKPII-GSSHAVPFLVELCKGKT--EHQCKLDA  365 (565)
Q Consensus       294 ~~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~---~~~k~~I-~~~g~i~~Lv~lL~~~~--~~~~~~~A  365 (565)
                      +++++..|+..|+||+|+.+|++++  .+++|+++|++|+.+   ++++..| ...|+||+|+.+|+++.  +..+++.|
T Consensus        88 ~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~A  167 (2102)
T PLN03200         88 EEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLL  167 (2102)
T ss_pred             CHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHH
Confidence            5889999999999999999999875  468899999999987   4456454 46899999999999872  22345777


Q ss_pred             HHHHHHhccCCCChHH-HHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC-cccHHHHhcCCCCHHHHHHHhhcC-CH
Q 008437          366 LHALYNLSTIPSNIPN-LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTG-EL  442 (565)
Q Consensus       366 l~aL~nLs~~~~nk~~-iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~-~~~r~~i~~~~g~v~~Lv~lL~~~-s~  442 (565)
                      +.+|+|||.+.+++.. ++++|+|+.|+.++.++++..++.|+.+|.+++.+ ++.+..+++. |+|+.|+++|.++ ++
T Consensus       168 v~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIea-GaVP~LV~LL~sg~~~  246 (2102)
T PLN03200        168 TGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDA-GAVKQLLKLLGQGNEV  246 (2102)
T ss_pred             HHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHccCCCh
Confidence            8999999999998865 58999999999999889999999999999998875 6688889886 9999999999875 56


Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCC---------hhHHHHHHHHHHHHHhhc
Q 008437          443 IEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGS---------TRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       443 ~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s---------~~~k~~A~~lL~~L~~~r  501 (565)
                      .+|++|+++|.+||.++.+++..+.+.|+||.|+.++...+         ...++.|.++|.++.+..
T Consensus       247 ~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~  314 (2102)
T PLN03200        247 SVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM  314 (2102)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence            89999999999999999999999999999999999877543         345899999999988643

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.94  E-value=1.8e-25  Score=266.61  Aligned_cols=282  Identities=21%  Similarity=0.225  Sum_probs=244.0

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      ++++.|+.+|.++ +...|..|++.|+++++.+++++..+++.|+||.|+++|.+    ++..+|++|+++|.||+.+.+
T Consensus       446 ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s----~~~~iqeeAawAL~NLa~~~~  520 (2102)
T PLN03200        446 EGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET----GSQKAKEDSATVLWNLCCHSE  520 (2102)
T ss_pred             CcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCcH
Confidence            5789999999998 89999999999999999898999999999999999999987    688999999999999997544


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCc------------------------------------
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK------------------------------------  337 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k------------------------------------  337 (565)
                      .++..+.++|+|++|+++|++++.  ++.|+++|.+|+...+..                                    
T Consensus       521 qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~  600 (2102)
T PLN03200        521 DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL  600 (2102)
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH
Confidence            445555578999999999998854  567999999986432211                                    


Q ss_pred             -hh-hccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437          338 -PI-IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA  414 (565)
Q Consensus       338 -~~-I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa  414 (565)
                       .. +...|+++.|+++|+++ +...++.|+++|.|++... +++..++.+|+|++|+.++..++..+++.++++|.||+
T Consensus       601 ~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~  679 (2102)
T PLN03200        601 VREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALS  679 (2102)
T ss_pred             HHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence             11 11358999999999999 8999999999999999754 67888999999999999999999999999999999999


Q ss_pred             c--CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHH
Q 008437          415 A--SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR  492 (565)
Q Consensus       415 ~--~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~  492 (565)
                      .  .++++..++.. |+|+.|+++|...+..+.+.|+.+|.+|+...+ .+..+.++|+|+.|+.++.+|+++.|+.|+.
T Consensus       680 ~~~~~~q~~~~v~~-GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~  757 (2102)
T PLN03200        680 RSIKENRKVSYAAE-DAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAAR  757 (2102)
T ss_pred             hCCCHHHHHHHHHc-CCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHH
Confidence            6  34455667775 999999999999999999999999999999887 4667778899999999999999999999999


Q ss_pred             HHHHHHhhcccCC
Q 008437          493 LLMLFREQRQRDH  505 (565)
Q Consensus       493 lL~~L~~~r~~~~  505 (565)
                      +|..|...++-++
T Consensus       758 AL~~L~~~~~~~~  770 (2102)
T PLN03200        758 ALAQLLKHFPVDD  770 (2102)
T ss_pred             HHHHHHhCCChhH
Confidence            9999887766554

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.4e-25  Score=221.49  Aligned_cols=279  Identities=20%  Similarity=0.258  Sum_probs=250.2

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      .|+..|+..+... ..++|+.+++.|.+|+.. +++|..++..|++.+|.++-++    .|..+|.+|..+|.|+. +..
T Consensus       126 ~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaks----kdirvqrnatgaLlnmT-hs~  198 (550)
T KOG4224|consen  126 LGLDLLILQMMTD-GVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKS----KDIRVQRNATGALLNMT-HSR  198 (550)
T ss_pred             cChHHHHHHhcCC-CcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhccc----chhhHHHHHHHHHHHhh-hhh
Confidence            3555666555544 689999999999999976 6799999999999999996665    78899999999999998 578


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCC--chHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSH--AVPFLVELCKGKTEHQCKLDALHALYN  371 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g--~i~~Lv~lL~~~~~~~~~~~Al~aL~n  371 (565)
                      +||+.++.+|++|.|+.++++++.  +..++.++.|++.+..++..+.+.+  .++.||.+++++ ++.++-.|.-||.|
T Consensus       199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrn  277 (550)
T KOG4224|consen  199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRN  277 (550)
T ss_pred             hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhh
Confidence            999999999999999999999854  6779999999999999999998876  999999999999 89999999999999


Q ss_pred             hccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcC-CHHHHHHHHH
Q 008437          372 LSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG-ELIEQEQAVS  450 (565)
Q Consensus       372 Ls~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~-s~~~~e~Av~  450 (565)
                      |+++.+....++++|.+|.+++|+.++.....-..++.+.|++.++-+..-|++. |++..||.+|+.+ +++.|-+|+.
T Consensus       278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~da-gfl~pLVrlL~~~dnEeiqchAvs  356 (550)
T KOG4224|consen  278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADA-GFLRPLVRLLRAGDNEEIQCHAVS  356 (550)
T ss_pred             hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecc-cchhHHHHHHhcCCchhhhhhHHH
Confidence            9999999999999999999999988887778888899999999999888888886 9999999999975 5569999999


Q ss_pred             HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhccc
Q 008437          451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR  503 (565)
Q Consensus       451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~  503 (565)
                      +|++|+..++..+..+.+.|+||+|..|+.++.-.++..-...+..|.-....
T Consensus       357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~  409 (550)
T KOG4224|consen  357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND  409 (550)
T ss_pred             HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence            99999998888889999999999999999999999999988888888755443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.7e-24  Score=229.11  Aligned_cols=282  Identities=18%  Similarity=0.220  Sum_probs=250.7

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      ..++.+|..|....++..|.+|+++|.+++.++.+.-..++++|++|.|+.+|.+    .+..+++.|+++|.|++.+..
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s----~~~~v~eQavWALgNIagds~  184 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS----PSADVREQAVWALGNIAGDSP  184 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC----CcHHHHHHHHHHHhccccCCh
Confidence            4578999999876579999999999999999999999999999999999999998    789999999999999998888


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCc---HHHHHHHHHHHhcCCCCCchhhcc-CCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSN---SHGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYN  371 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~---~~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n  371 (565)
                      ..|..+.+.|++++|..++....   ...+++|+|.||+....-...+.. ..++|.|..+|.+. |+++..+|++||.+
T Consensus       185 ~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsy  263 (514)
T KOG0166|consen  185 DCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-DEEVLTDACWALSY  263 (514)
T ss_pred             HHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence            88999999999999999998765   356799999999987543333333 57899999999999 99999999999999


Q ss_pred             hccC-CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHH
Q 008437          372 LSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAV  449 (565)
Q Consensus       372 Ls~~-~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av  449 (565)
                      |+.. .+....++++|+++.|+++|...+..++--|+.++.|++.+.+.....+-..|+++.|..+|.. .....++.|+
T Consensus       264 Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAc  343 (514)
T KOG0166|consen  264 LTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEAC  343 (514)
T ss_pred             HhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHH
Confidence            9954 4567777899999999999988888888999999999999888888776667999999999985 4556899999


Q ss_pred             HHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcc
Q 008437          450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ  502 (565)
Q Consensus       450 ~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~  502 (565)
                      +++.||+.++.+..+.++++|++|.|+.++..+..++|..|++++.++.-...
T Consensus       344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~  396 (514)
T KOG0166|consen  344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT  396 (514)
T ss_pred             HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence            99999999999999999999999999999999999999999999998875443

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=8.2e-24  Score=210.55  Aligned_cols=273  Identities=21%  Similarity=0.273  Sum_probs=244.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      ++..+.+ |....+..+|..|..+|.+++ +..++|+.++.+|++|.||.+|++    .|..+|..+..++.|++. +..
T Consensus       168 aL~pltr-LakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s----~d~dvqyycttaisnIaV-d~~  240 (550)
T KOG4224|consen  168 ALEPLTR-LAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKS----GDLDVQYYCTTAISNIAV-DRR  240 (550)
T ss_pred             chhhhHh-hcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhcc----CChhHHHHHHHHhhhhhh-hHH
Confidence            3445555 665558999999999999998 677899999999999999999998    799999999999999997 688


Q ss_pred             hhHHHHhcC--chHHHHHHhcCCcHH--HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          297 NKELMLAAG--VIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       297 nk~~i~~~G--~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      +|+.++++|  .++.|+.++++++.+  -.|.-+|.||+...++...|.+.|.+|.||++|+++ ..........+|.|+
T Consensus       241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrni  319 (550)
T KOG4224|consen  241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNI  319 (550)
T ss_pred             HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhc
Confidence            999999988  999999999998764  448889999999999999999999999999999988 666777788999999


Q ss_pred             ccCCCChHHHHHcCchHHHhhccCCC-ChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437          373 STIPSNIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS  450 (565)
Q Consensus       373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~-~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~  450 (565)
                      +.++-|-..++++|.+.+|++++.-+ +.+++-.|..+|+||+. .+.++..|.+. |+|+.|.+++.++.-.+|+.--+
T Consensus       320 sihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~es-gAi~kl~eL~lD~pvsvqseisa  398 (550)
T KOG4224|consen  320 SIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRES-GAIPKLIELLLDGPVSVQSEISA  398 (550)
T ss_pred             ccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhc-CchHHHHHHHhcCChhHHHHHHH
Confidence            99999999999999999999988665 45689999999999998 66788888886 99999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      ++..|+-++. .+..+.+.|.+|.|+.+..+.+.+++.+|+.+|-+|..
T Consensus       399 c~a~Lal~d~-~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  399 CIAQLALNDN-DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS  446 (550)
T ss_pred             HHHHHHhccc-cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence            9988887665 57788999999999999999999999999999999884

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.88  E-value=9.1e-22  Score=194.54  Aligned_cols=277  Identities=18%  Similarity=0.192  Sum_probs=242.0

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      .-++.+|++|.+....-.|.+|+++|.++++...+-...++++|++|.++++|.+    .+..++++++|+|.|++-+++
T Consensus       114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s----~~~~V~eQavWALGNiAGDS~  189 (526)
T COG5064         114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS----TEDDVREQAVWALGNIAGDSE  189 (526)
T ss_pred             cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC----chHHHHHHHHHHhccccCCch
Confidence            3468899999655466779999999999999888778888999999999999998    678899999999999997777


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH----HHHHHHHHHHhcCCCC---CchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS----HGAATALYLNLSFLDD---AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA  368 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~----~~~A~aaL~nLs~~~~---~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a  368 (565)
                      ..|..+.+.|++++|+.+|.+...    ..++.++|.||+....   .-..|  +.++|.|.+|+-+. ++++..+|+||
T Consensus       190 ~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~-D~evlvDA~WA  266 (526)
T COG5064         190 GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSR-DPEVLVDACWA  266 (526)
T ss_pred             hHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhc-CHHHHHHHHHH
Confidence            789999999999999999986532    3669999999986532   22222  46899999999998 99999999999


Q ss_pred             HHHhccCCC-ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHH
Q 008437          369 LYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ  447 (565)
Q Consensus       369 L~nLs~~~~-nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~  447 (565)
                      |..|+..+. -...+++.|+.+.|+++|.+.+..++.-++..+.|+....+.+..++-..|++..+..+|.+....++..
T Consensus       267 iSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKE  346 (526)
T COG5064         267 ISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKE  346 (526)
T ss_pred             HHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhh
Confidence            999997664 5556778999999999988888889999999999999988888877666799999999999888899999


Q ss_pred             HHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          448 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       448 Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      |++++.||..++.+..+.+++..++|.|+.++....-++|..|.+++.+...
T Consensus       347 aCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats  398 (526)
T COG5064         347 ACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS  398 (526)
T ss_pred             hheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999888663

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.87  E-value=4.5e-23  Score=166.18  Aligned_cols=72  Identities=47%  Similarity=0.815  Sum_probs=63.6

Q ss_pred             CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 008437           69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG  140 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~  140 (565)
                      +|++|+||||+++|.|||++++||||||.+|++|+..++.+||.|+++++..+|+||..||..|++|+.+|.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence            699999999999999999999999999999999999888999999999999999999999999999999884

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=8.9e-21  Score=200.94  Aligned_cols=278  Identities=20%  Similarity=0.198  Sum_probs=239.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      ....+..+.+. +.+.|..+...+|.+...... ....+...|.|+.||.+|...   .++.+|..|+++|.|+|.+..+
T Consensus        68 ~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~---~~~~lq~eAAWaLTnIAsgtse  143 (514)
T KOG0166|consen   68 LELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD---DNPTLQFEAAWALTNIASGTSE  143 (514)
T ss_pred             hHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC---CChhHHHHHHHHHHHHhcCchh
Confidence            56778888887 888899999999999754332 233444569999999999853   5689999999999999988888


Q ss_pred             hhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437          297 NKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS  373 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs  373 (565)
                      ....++++|++|.++.+|.+++  .++.|+++|.|++.+ ...|..+...|++++|+.++.........+++.|+|.|||
T Consensus       144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc  223 (514)
T KOG0166|consen  144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC  223 (514)
T ss_pred             hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            8999999999999999999885  468899999999988 6788888899999999999988733468899999999999


Q ss_pred             cCCCChHHHH-HcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437          374 TIPSNIPNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL  452 (565)
Q Consensus       374 ~~~~nk~~iv-~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L  452 (565)
                      ....--..+. -..++|.|..++.+.|..+...|+++|.+|+..+..+..++-..|+++.|+++|...++.++-.|+.++
T Consensus       224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai  303 (514)
T KOG0166|consen  224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI  303 (514)
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence            8775433333 367899999999999999999999999999988777777766679999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHhCCcHHHHHHhhh-cCChhHHHHHHHHHHHHHh
Q 008437          453 FLLCNGNEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       453 ~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~-~~s~~~k~~A~~lL~~L~~  499 (565)
                      .||..++....+.++..|++|.|..|+. +..+..|+.|.++|.++..
T Consensus       304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA  351 (514)
T KOG0166|consen  304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA  351 (514)
T ss_pred             cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence            9999999999999999999999998877 5667789999999999774

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.81  E-value=2e-19  Score=178.02  Aligned_cols=276  Identities=17%  Similarity=0.169  Sum_probs=234.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      .++.+.+.|-+. +.+.|..|+...|.+.+. ..--...+.++|.+|.++.|+...   .....|-.|+|+|.|++.+..
T Consensus        72 elp~lt~~l~Sd-Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~---q~~mlqfEAaWalTNiaSGtt  147 (526)
T COG5064          72 ELPQLTQQLFSD-DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI---QRDMLQFEAAWALTNIASGTT  147 (526)
T ss_pred             hhHHHHHHHhhh-HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc---chhHHHHHHHHHHhhhccCcc
Confidence            468888889887 899999999999988644 333566788999999999999542   456688999999999997665


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGK-TEHQCKLDALHALYN  371 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~-~~~~~~~~Al~aL~n  371 (565)
                      ...+.++++|++|.++.+|.+++  .++.++++|.|++.+ +..|..+...|++++|+.+|.+. .+....+++.|+|.|
T Consensus       148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN  227 (526)
T COG5064         148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN  227 (526)
T ss_pred             cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence            56677789999999999999874  478899999999988 56788888899999999999865 345788999999999


Q ss_pred             hccCC---CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHH
Q 008437          372 LSTIP---SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA  448 (565)
Q Consensus       372 Ls~~~---~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~A  448 (565)
                      ||...   .+-..+-  -++|.|.+|+...++.+.-.|+++|..|+..+..+..++-..|....|+++|.+.+..++..|
T Consensus       228 lcRGknP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPa  305 (526)
T COG5064         228 LCRGKNPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA  305 (526)
T ss_pred             hhCCCCCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHH
Confidence            99643   2443333  368889998888899999999999999999887666655556999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          449 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       449 v~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      ++...||..++....+.++..|+++.+..|+.+..+++|..|.+.+.++.
T Consensus       306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT  355 (526)
T COG5064         306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT  355 (526)
T ss_pred             HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc
Confidence            99999999988878889999999999999999998999999999888765

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.81  E-value=4.1e-18  Score=189.76  Aligned_cols=270  Identities=19%  Similarity=0.235  Sum_probs=225.8

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.+..|++.|.+. +.+....++..|++|+- ..+++..|.+.|+|+.|++++.+    .+..++..++.+|+||+. ++
T Consensus       290 ~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s----~~~~l~~~aLrlL~NLSf-d~  362 (708)
T PF05804_consen  290 GIVSLLVKCLDRE-NEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPS----ENEDLVNVALRLLFNLSF-DP  362 (708)
T ss_pred             CCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhCc-CH
Confidence            4678889999887 89999999999999984 55699999999999999999987    678899999999999995 78


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI  375 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~  375 (565)
                      ++|..|++.|++|.|+.+|..++.+..+.++|.+||..+++|..+...+++|.|+++|-++.+.++...++.++.|||.+
T Consensus       363 ~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  363 ELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            89999999999999999999888788899999999999999999998999999999887664667778899999999999


Q ss_pred             CCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHH
Q 008437          376 PSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLF  453 (565)
Q Consensus       376 ~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~  453 (565)
                      ..|...+.+.|+++.|++ .++..++.    .+.+++|++.++..-.....  +.|..|+.++.. .++...-.++++|.
T Consensus       443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLa  516 (708)
T PF05804_consen  443 KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILA  516 (708)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence            999999999999999999 55544433    56899999998843333332  578888888876 46778889999999


Q ss_pred             HhhcCChHHHHHHHhCCcHHHHHHhhhcCC--hhHHHHHHHHHHHHH
Q 008437          454 LLCNGNEKCCQMVLQEGVIPALVSISVNGS--TRGRDKAQRLLMLFR  498 (565)
Q Consensus       454 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s--~~~k~~A~~lL~~L~  498 (565)
                      ||...+..+.+.+.+.+++|.|..++..|.  +...-.++.++..+.
T Consensus       517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla  563 (708)
T PF05804_consen  517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA  563 (708)
T ss_pred             hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence            999877777777778899999998776652  334444444444433

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.77  E-value=3.9e-17  Score=181.99  Aligned_cols=275  Identities=23%  Similarity=0.259  Sum_probs=216.5

Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhccc-cc-------------------
Q 008437          215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESA-VC-------------------  273 (565)
Q Consensus       215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~-~~-------------------  273 (565)
                      .+.+...++.|-.  +...+.++...|..|++ +++|-..+.+ .-++.+|.+.|... ..                   
T Consensus       122 ~~~~d~yiE~lYe--~~~ek~~~~~~il~La~-~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~  198 (708)
T PF05804_consen  122 INDLDEYIELLYE--DIPEKIRGTSLILQLAR-NPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFS  198 (708)
T ss_pred             HHHHHHHHHHHhc--ccHHHHHHHHHHHHHhC-CcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Confidence            3566777888874  35667788888888885 4556555555 55667777777431 00                   


Q ss_pred             ----------------------------------------CC---------------------CHHHHHHHHHHHHHhhc
Q 008437          274 ----------------------------------------ER---------------------NSYAQEIGAMALFNLAV  292 (565)
Q Consensus       274 ----------------------------------------s~---------------------~~~~q~~A~~aL~nLa~  292 (565)
                                                              ..                     ...+...++..|+||+ 
T Consensus       199 ~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLA-  277 (708)
T PF05804_consen  199 QFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLA-  277 (708)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence                                                    00                     0122345566899999 


Q ss_pred             cCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437          293 NNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY  370 (565)
Q Consensus       293 ~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~  370 (565)
                      .+.+++..|++.|+++.|+++|++++.  ...++.+|..||...+||..|++.|+|+.|++++.++ +......++++|+
T Consensus       278 ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~  356 (708)
T PF05804_consen  278 EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE-NEDLVNVALRLLF  356 (708)
T ss_pred             cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence            478899999999999999999998754  3458899999999999999999999999999999998 8899999999999


Q ss_pred             HhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHH
Q 008437          371 NLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAV  449 (565)
Q Consensus       371 nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av  449 (565)
                      |||.+.++|..+++.|+||.|+.++.++  ..+..|+.+|.+|+..+++|..+..+ ++++.|+++|.. .++.+...++
T Consensus       357 NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~~~~~~v~~eli  433 (708)
T PF05804_consen  357 NLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLENSEEEVQLELI  433 (708)
T ss_pred             HhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHhCCCccccHHHH
Confidence            9999999999999999999999988654  45578999999999999999988887 899999998766 4555666788


Q ss_pred             HHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcccC
Q 008437          450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD  504 (565)
Q Consensus       450 ~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~~  504 (565)
                      +++.||+.+.. +.+.+.+.|+++.|+.......+      ..+|+++|...+++
T Consensus       434 aL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D------~lLlKlIRNiS~h~  481 (708)
T PF05804_consen  434 ALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD------PLLLKLIRNISQHD  481 (708)
T ss_pred             HHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc------HHHHHHHHHHHhcC
Confidence            88889998775 67888888999999987655443      33455555555554

>smart00504 Ubox Modified RING finger domain

Probab=99.71  E-value=9.2e-18  Score=131.51  Aligned_cols=63  Identities=57%  Similarity=0.919  Sum_probs=60.4

Q ss_pred             cccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 008437           72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW  135 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~  135 (565)
                      +|.||||+++|+|||+++|||+|||.||++|+.+ +.+||.|+++++..+++||..|++.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            5899999999999999999999999999999987 77899999999999999999999999998

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.69  E-value=2.1e-16  Score=178.23  Aligned_cols=272  Identities=17%  Similarity=0.161  Sum_probs=224.9

Q ss_pred             HHH-HHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc--c------CCCHHHHHHHHHHHHHhhccCchhhHHHHh
Q 008437          233 QKC-NIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV--C------ERNSYAQEIGAMALFNLAVNNNRNKELMLA  303 (565)
Q Consensus       233 ~q~-~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~--~------s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~  303 (565)
                      -|. .|+..|-.+. .++++|..|-+.|++.++-.||.-.+  +      ...-.++..|.++|-||.+++..||..+..
T Consensus       313 H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs  391 (2195)
T KOG2122|consen  313 HQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS  391 (2195)
T ss_pred             hhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence            344 6777777776 67899999999999999999875221  1      113458899999999999998889998886


Q ss_pred             c-CchHHHHHHhcCCc--HHHHHHHHHHHhcCCC-C-CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCC
Q 008437          304 A-GVIPLLEKMISNSN--SHGAATALYLNLSFLD-D-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPS  377 (565)
Q Consensus       304 ~-G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~-~-~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~  377 (565)
                      . |.++.||..|.+..  .....+.+|.||+... . .|..+.+.|-+..|+..--........+..+.|||||+. +.+
T Consensus       392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte  471 (2195)
T KOG2122|consen  392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE  471 (2195)
T ss_pred             hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence            4 89999999998763  3455888999999873 3 467777789999888764333256788999999999996 558


Q ss_pred             ChHHHHH-cCchHHHhhccC-C---CChHHHHHHHHHHHHHhc----CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHH
Q 008437          378 NIPNLLS-AGIISGLQSLAV-P---GDPMWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA  448 (565)
Q Consensus       378 nk~~iv~-~G~v~~Lv~Ll~-~---~~~~~~e~al~~L~nLa~----~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~A  448 (565)
                      ||..|.. .|++..||.+|. +   ....+.+.+-+||.|.+.    ++..|..+.++ .++..|++.|.+.+-.+.-++
T Consensus       472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~-NCLq~LLQ~LKS~SLTiVSNa  550 (2195)
T KOG2122|consen  472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH-NCLQTLLQHLKSHSLTIVSNA  550 (2195)
T ss_pred             cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh-hHHHHHHHHhhhcceEEeecc
Confidence            9999998 699999999653 3   356788999999999765    67777777777 999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcccCCC
Q 008437          449 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHP  506 (565)
Q Consensus       449 v~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~~~~  506 (565)
                      +++||||..++.+..+++.+.|+|+.|..|+.+.....-+-++..|++|-.+|.-.+.
T Consensus       551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAkq~  608 (2195)
T KOG2122|consen  551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAKQA  608 (2195)
T ss_pred             hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchhhh
Confidence            9999999999999999999999999999999999999999999999998888855543

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.67  E-value=7.5e-16  Score=168.32  Aligned_cols=281  Identities=20%  Similarity=0.157  Sum_probs=223.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .++..+.+|.+. ++.+|..|+..|..++..+.+.+..+.+.|+|+.||.+|.+    .+.++|.+|+++|+||...+..
T Consensus       234 ~lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~----~~~evq~~acgaLRNLvf~~~~  308 (717)
T KOG1048|consen  234 TLPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH----RNDEVQRQACGALRNLVFGKST  308 (717)
T ss_pred             ccHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC----CcHHHHHHHHHHHHhhhcccCC
Confidence            457889999987 99999999999999999999999999999999999999998    7899999999999999876655


Q ss_pred             --hhHHHHhcCchHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC---------C----C
Q 008437          297 --NKELMLAAGVIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK---------T----E  358 (565)
Q Consensus       297 --nk~~i~~~G~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~---------~----~  358 (565)
                        ||..|.+.++|+.++++|+..   +.++..+++|+||+..|..|..|.. .+++.|.+-+-..         .    +
T Consensus       309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~  387 (717)
T KOG1048|consen  309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAED  387 (717)
T ss_pred             cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCccccccc
Confidence              999999999999999999852   5678899999999999888887763 4566666544211         0    2


Q ss_pred             HHHHHHHHHHHHHhcc-CCCChHHHHH-cCchHHHhhccC------CCChHHHHHHHHHHHHHhcCcc------------
Q 008437          359 HQCKLDALHALYNLST-IPSNIPNLLS-AGIISGLQSLAV------PGDPMWTEKSLAVLLNLAASAA------------  418 (565)
Q Consensus       359 ~~~~~~Al~aL~nLs~-~~~nk~~iv~-~G~v~~Lv~Ll~------~~~~~~~e~al~~L~nLa~~~~------------  418 (565)
                      ..+..++..+|.|+++ ..+.|.++.+ .|.|..|+..+.      ..+...+|+|+.+|.||+-.-+            
T Consensus       388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~  467 (717)
T KOG1048|consen  388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA  467 (717)
T ss_pred             ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence            4577899999999998 6678888887 699999998553      2466778999999999985221            


Q ss_pred             ---------c-----------HHHH---------------------hcCCCCHHHHHHHhh-cCCHHHHHHHHHHHHHhh
Q 008437          419 ---------G-----------KEEM---------------------NSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLC  456 (565)
Q Consensus       419 ---------~-----------r~~i---------------------~~~~g~v~~Lv~lL~-~~s~~~~e~Av~~L~~Lc  456 (565)
                               +           ...+                     .-++.+|..-..+|. ...+.+.|.++++|-||+
T Consensus       468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt  547 (717)
T KOG1048|consen  468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLT  547 (717)
T ss_pred             cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhh
Confidence                     0           0000                     011123333344443 357889999999999999


Q ss_pred             cCCh----HHHHHH-HhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhccc
Q 008437          457 NGNE----KCCQMV-LQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR  503 (565)
Q Consensus       457 ~~~~----~~~~~v-~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~  503 (565)
                      ....    ..+..+ .++.+.|.|++|+.++++.+.+.++.+|++|+.....
T Consensus       548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn  599 (717)
T KOG1048|consen  548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN  599 (717)
T ss_pred             ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh
Confidence            7652    335555 7889999999999999999999999999999865433

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=6.6e-14  Score=139.18  Aligned_cols=276  Identities=14%  Similarity=0.116  Sum_probs=221.7

Q ss_pred             hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~-~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      ++...+|..|... ++.++-.-.+..++.-+-.++.+|..+++.++++.+.+.|...   +...+.+.+.++++.|... 
T Consensus       145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~---gk~~~VRel~~a~r~l~~d-  220 (461)
T KOG4199|consen  145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNRE---GKTRTVRELYDAIRALLTD-  220 (461)
T ss_pred             ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHccc---CccHHHHHHHHHHHHhcCC-
Confidence            4566667777542 3667788888889988888999999999999999999888763   2335667788899998754 


Q ss_pred             chh----------hHHHHhcCchHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCH--
Q 008437          295 NRN----------KELMLAAGVIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEH--  359 (565)
Q Consensus       295 ~~n----------k~~i~~~G~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~--  359 (565)
                      ++.          .+.|+..|++..|++.|+.+   +.-..+..+|..|+..++....|.++|++..|++++.+..+.  
T Consensus       221 DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~  300 (461)
T KOG4199|consen  221 DDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGN  300 (461)
T ss_pred             CceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhH
Confidence            433          34677788999999999764   344668889999999999999999999999999999874233  


Q ss_pred             -HHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhcc--CCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHH
Q 008437          360 -QCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA--VPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLAT  435 (565)
Q Consensus       360 -~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll--~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~  435 (565)
                       ...+.++..|..|+.++++|..+|+.|+.+.++.++  ...++.+.+.+++++.-||. .++.-..+++. |+-...++
T Consensus       301 r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~-G~a~~avq  379 (461)
T KOG4199|consen  301 RTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEA-GAADLAVQ  379 (461)
T ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhc-chHHHHHH
Confidence             355889999999999999999999999999999953  34689999999999999997 55666677775 77777788


Q ss_pred             Hhhc--CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437          436 VLDT--GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF  497 (565)
Q Consensus       436 lL~~--~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L  497 (565)
                      -|+.  ....+|.+|++.+.||..++.+++..++..| +..|+.......+.....|..+||-|
T Consensus       380 AmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  380 AMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhc
Confidence            8875  4567899999999999999988888888877 67777766666666777777788764

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=1.2e-13  Score=137.37  Aligned_cols=268  Identities=13%  Similarity=0.129  Sum_probs=222.2

Q ss_pred             HhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhc
Q 008437          225 LNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA  304 (565)
Q Consensus       225 L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~  304 (565)
                      |.+..+...-.+++.+|..+....++    +.+..+...++.+|....  .+.++-..++..+..-+..++.||..+++.
T Consensus       115 la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~--~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~  188 (461)
T KOG4199|consen  115 LAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKV--ESEEVTLLTLQWLQKACIMHEVNRQLFMEL  188 (461)
T ss_pred             HhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            34444677788999999999866554    556667889999997633  456666777777888787889999999999


Q ss_pred             CchHHHHHHhcC-Cc--HHHHHHHHHHHhcCCCCCc----------hhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437          305 GVIPLLEKMISN-SN--SHGAATALYLNLSFLDDAK----------PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN  371 (565)
Q Consensus       305 G~i~~Lv~lL~s-~~--~~~~A~aaL~nLs~~~~~k----------~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n  371 (565)
                      ++++++...|.. +.  +...+.+++.-|...++.|          ..|...|++..|++.|.-+.++.....++.+|..
T Consensus       189 ~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~  268 (461)
T KOG4199|consen  189 KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKA  268 (461)
T ss_pred             hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHH
Confidence            999999988764 33  3456888999988888765          3445567889999999988889999999999999


Q ss_pred             hccCCCChHHHHHcCchHHHhhccCC-C---ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc--CCHHHH
Q 008437          372 LSTIPSNIPNLLSAGIISGLQSLAVP-G---DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT--GELIEQ  445 (565)
Q Consensus       372 Ls~~~~nk~~iv~~G~v~~Lv~Ll~~-~---~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~--~s~~~~  445 (565)
                      |+..++.+..+++.|++..|++++.+ +   ...+.+.++.+|..|+.++..+..|++. |+.+.++.++..  .+|.+.
T Consensus       269 lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~-gg~~~ii~l~~~h~~~p~Vi  347 (461)
T KOG4199|consen  269 LAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEK-GGLDKIITLALRHSDDPLVI  347 (461)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHh-cChHHHHHHHHHcCCChHHH
Confidence            99999999999999999999997755 2   3456688999999999999999999997 999999999865  789999


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc--CChhHHHHHHHHHHHHHh
Q 008437          446 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN--GSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       446 e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~--~s~~~k~~A~~lL~~L~~  499 (565)
                      +.++.++..||-++++....+++.|+-...+.-+..  -...++++|..++|++..
T Consensus       348 ~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~  403 (461)
T KOG4199|consen  348 QEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV  403 (461)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887777765554  245678999999999873

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.55  E-value=6.3e-13  Score=145.64  Aligned_cols=281  Identities=18%  Similarity=0.119  Sum_probs=214.8

Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc--chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh-
Q 008437          215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA-  291 (565)
Q Consensus       215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa-  291 (565)
                      ..+|+.||.+|.+. ..++|..|+.+||+|.-+...  ++..|.+.++|+.|+++|...   .|.++++....+|+||+ 
T Consensus       274 lggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t---~D~ev~e~iTg~LWNLSS  349 (717)
T KOG1048|consen  274 LGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHT---QDDEVRELITGILWNLSS  349 (717)
T ss_pred             hccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhh---cchHHHHHHHHHHhcccc
Confidence            47899999999998 999999999999999876554  999999999999999999853   34555555555555554 


Q ss_pred             -----------------------------------------------------ccCchhhHHHHhc-CchHHHHHHhcC-
Q 008437          292 -----------------------------------------------------VNNNRNKELMLAA-GVIPLLEKMISN-  316 (565)
Q Consensus       292 -----------------------------------------------------~~~~~nk~~i~~~-G~i~~Lv~lL~s-  316 (565)
                                                                           ...++.|+.|.+. |.|..|+.++++ 
T Consensus       350 ~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~  429 (717)
T KOG1048|consen  350 NDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA  429 (717)
T ss_pred             hhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH
Confidence                                                                 3233456677765 789999888863 


Q ss_pred             -------CcHHHHHHHHHHHhcCCCC------C--------------------------chh------------------
Q 008437          317 -------SNSHGAATALYLNLSFLDD------A--------------------------KPI------------------  339 (565)
Q Consensus       317 -------~~~~~~A~aaL~nLs~~~~------~--------------------------k~~------------------  339 (565)
                             ....++++.+|.||+..-+      .                          +..                  
T Consensus       430 i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pk  509 (717)
T KOG1048|consen  430 IQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPK  509 (717)
T ss_pred             HHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCC
Confidence                   1246889999999985411      0                          000                  


Q ss_pred             ----hccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC-----ChHHH-HHcCchHHHhhccCCCChHHHHHHHHH
Q 008437          340 ----IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-----NIPNL-LSAGIISGLQSLAVPGDPMWTEKSLAV  409 (565)
Q Consensus       340 ----I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~-----nk~~i-v~~G~v~~Lv~Ll~~~~~~~~e~al~~  409 (565)
                          +....+|..=..+|....+..+.++++.||-||+....     .+..+ ....+.+.|++|+..++..+...++.+
T Consensus       510 G~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~  589 (717)
T KOG1048|consen  510 GSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGA  589 (717)
T ss_pred             CceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHH
Confidence                00011222222334333367799999999999986432     44444 567899999999999999999999999


Q ss_pred             HHHHhcCcccHHHHhcCCCCHHHHHHHhhcC------CHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc-C
Q 008437          410 LLNLAASAAGKEEMNSTPGLVSGLATVLDTG------ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-G  482 (565)
Q Consensus       410 L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~------s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-~  482 (565)
                      |.||+.+..++..|..  ++++.|++.|..+      +.+..-.++.+|++|...+..+...+.+.+++++|+.|..+ -
T Consensus       590 LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~  667 (717)
T KOG1048|consen  590 LRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQH  667 (717)
T ss_pred             HhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccC
Confidence            9999999999999984  7999999999763      25677788889999999888888999999999999988776 4


Q ss_pred             ChhHHHHHHHHHHHHHhhc
Q 008437          483 STRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       483 s~~~k~~A~~lL~~L~~~r  501 (565)
                      +++.-+.|..+|..|-.++
T Consensus       668 S~k~~kaAs~vL~~lW~y~  686 (717)
T KOG1048|consen  668 SPKEFKAASSVLDVLWQYK  686 (717)
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            6688899999988876553

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.46  E-value=5e-12  Score=126.13  Aligned_cols=211  Identities=21%  Similarity=0.185  Sum_probs=172.0

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.+..|+..|....++.+|..|+.++.+.+ ..+.++..+.+.|+++.+..+|.+    +++.+++.|+.+|.|++. +.
T Consensus        12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~----p~~~vr~~AL~aL~Nls~-~~   85 (254)
T PF04826_consen   12 QELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLND----PNPSVREKALNALNNLSV-ND   85 (254)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCC----CChHHHHHHHHHHHhcCC-Ch
Confidence            567899999997769999999999999987 466899999999999999999988    789999999999999995 67


Q ss_pred             hhhHHHHhcCchHHHHHHhcCC----cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNS----NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN  371 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~----~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n  371 (565)
                      +|...|-.  .++.+++.+.+.    ..+..+..+|.||+..+++...+.  ..++.|+.+|.+| +..++..++++|.|
T Consensus        86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G-~~~~k~~vLk~L~n  160 (254)
T PF04826_consen   86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSG-SEKTKVQVLKVLVN  160 (254)
T ss_pred             hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence            78887643  466666655443    234568899999999988888885  4799999999999 89999999999999


Q ss_pred             hccCCCChHHHHHcCchHHHhhccCCC-ChHHHHHHHHHHHHHhcCcccHHHH-hcCCCCHHHHHHHh
Q 008437          372 LSTIPSNIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASAAGKEEM-NSTPGLVSGLATVL  437 (565)
Q Consensus       372 Ls~~~~nk~~iv~~G~v~~Lv~Ll~~~-~~~~~e~al~~L~nLa~~~~~r~~i-~~~~g~v~~Lv~lL  437 (565)
                      ||.++.+...++.++++..++.|+... +..+...++.+..||..+-...... .....--..|..++
T Consensus       161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~  228 (254)
T PF04826_consen  161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLF  228 (254)
T ss_pred             hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHH
Confidence            999999999999999999999988664 6778899999999997754333222 21223445555444

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.43  E-value=7.5e-12  Score=124.84  Aligned_cols=195  Identities=22%  Similarity=0.235  Sum_probs=168.1

Q ss_pred             hhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcC
Q 008437          255 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF  332 (565)
Q Consensus       255 i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~  332 (565)
                      +.+++.++.|+.+|...   .|+.+|+.|..+|.|.+. .+.++..|.+.|+++.+..+|..++.  ++.|+.+|.||+.
T Consensus         8 ~l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~   83 (254)
T PF04826_consen    8 ILEAQELQKLLCLLEST---EDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV   83 (254)
T ss_pred             CcCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence            45677889999999863   689999999999999985 68999999999999999999998754  5779999999999


Q ss_pred             CCCCchhhccCCchHHHHHHhcCC-CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHH
Q 008437          333 LDDAKPIIGSSHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL  411 (565)
Q Consensus       333 ~~~~k~~I~~~g~i~~Lv~lL~~~-~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~  411 (565)
                      ..+++..|-.  .++.+.+.+.+. .+..++..++++|.||+..++.+..+.  +.++.++.|+..++..++..++.+|.
T Consensus        84 ~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~  159 (254)
T PF04826_consen   84 NDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLV  159 (254)
T ss_pred             ChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHH
Confidence            9999988853  577777655443 367889999999999998888877765  47999999988899999999999999


Q ss_pred             HHhcCcccHHHHhcCCCCHHHHHHHhhcC-CHHHHHHHHHHHHHhhcC
Q 008437          412 NLAASAAGKEEMNSTPGLVSGLATVLDTG-ELIEQEQAVSCLFLLCNG  458 (565)
Q Consensus       412 nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~-s~~~~e~Av~~L~~Lc~~  458 (565)
                      ||+.++.....++.. .++..++.++... +......++.+..+|..+
T Consensus       160 nLS~np~~~~~Ll~~-q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  160 NLSENPDMTRELLSA-QVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HhccCHHHHHHHHhc-cchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            999999998999886 8999999999874 677789999999999753

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.41  E-value=1.5e-12  Score=147.74  Aligned_cols=225  Identities=19%  Similarity=0.118  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh-hHHHHhcCchH
Q 008437          231 LGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN-KELMLAAGVIP  308 (565)
Q Consensus       231 ~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n-k~~i~~~G~i~  308 (565)
                      ...|..|..+|.+|+-.+..++..+.. .|+++.||..|.+    ...+++..-+.+|+||+..-+.| |+.+.+.|-+.
T Consensus       365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s----~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVt  440 (2195)
T KOG2122|consen  365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLIS----APEELLQVYASVLRNLSWRADSNMKKVLRETGSVT  440 (2195)
T ss_pred             HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhc----ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHH
Confidence            356888999999999988889998886 9999999999987    34567777778999999876666 45555678888


Q ss_pred             HHHHHh-cC--CcHHHHHHHHHHHhcCC-CCCchhhcc-CCchHHHHHHhcCC---CCHHHHHHHHHHHHHhcc----CC
Q 008437          309 LLEKMI-SN--SNSHGAATALYLNLSFL-DDAKPIIGS-SHAVPFLVELCKGK---TEHQCKLDALHALYNLST----IP  376 (565)
Q Consensus       309 ~Lv~lL-~s--~~~~~~A~aaL~nLs~~-~~~k~~I~~-~g~i~~Lv~lL~~~---~~~~~~~~Al~aL~nLs~----~~  376 (565)
                      .|+..- ..  ..+....+.+|+||+.+ .+||..|.+ .|++.+||.+|.-.   ....+.+.|-++|.|.++    ++
T Consensus       441 aLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E  520 (2195)
T KOG2122|consen  441 ALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCE  520 (2195)
T ss_pred             HHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccc
Confidence            887754 32  24567789999999998 799999987 69999999999743   145678999999999874    55


Q ss_pred             CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008437          377 SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL  455 (565)
Q Consensus       377 ~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~L  455 (565)
                      +.|..+.+.+++..|++.|++....++-+++++||||+. +++.++.+.++ |+|+.|..++.+.+..+-+-++.+|.||
T Consensus       521 ~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~-gAv~mLrnLIhSKhkMIa~GSaaALrNL  599 (2195)
T KOG2122|consen  521 DYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDD-GAVPMLRNLIHSKHKMIAMGSAAALRNL  599 (2195)
T ss_pred             hHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhc-ccHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence            677888889999999999999888889999999999987 67788888887 9999999999999999999999999998


Q ss_pred             hcCCh
Q 008437          456 CNGNE  460 (565)
Q Consensus       456 c~~~~  460 (565)
                      -.+.+
T Consensus       600 ln~RP  604 (2195)
T KOG2122|consen  600 LNFRP  604 (2195)
T ss_pred             hcCCc
Confidence            77653

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=3e-11  Score=125.01  Aligned_cols=258  Identities=19%  Similarity=0.240  Sum_probs=197.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .+..||+.|... +.+.-.-.+..|..|+-. .+++..|.+.|.|+.|+++...    .++.++...++.|+||+. +..
T Consensus       305 iV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~----~h~dL~~~tl~LlfNlSF-D~g  377 (791)
T KOG1222|consen  305 IVAMLVKALDRS-NSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPI----QHPDLRKATLMLLFNLSF-DSG  377 (791)
T ss_pred             HHHHHHHHHccc-chHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCC----CCHHHHHHHHHHhhhccc-ccc
Confidence            456677888776 677777777888888744 4699999999999999999977    788999999999999996 678


Q ss_pred             hhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC
Q 008437          297 NKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP  376 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~  376 (565)
                      ++..|+..|.+|.|+.+|.+......|+..|+.+|++++.|.++.-..+|+.|.+.+-++.+.++-.+.+..-.|||.+.
T Consensus       378 lr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk  457 (791)
T KOG1222|consen  378 LRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK  457 (791)
T ss_pred             ccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence            99999999999999999998877788999999999999999999888999999998877645544444443345777776


Q ss_pred             CChHHHHHcCchHHHhh-ccC-------------------------------------CCChHHHHHHHHHHHHHhcCcc
Q 008437          377 SNIPNLLSAGIISGLQS-LAV-------------------------------------PGDPMWTEKSLAVLLNLAASAA  418 (565)
Q Consensus       377 ~nk~~iv~~G~v~~Lv~-Ll~-------------------------------------~~~~~~~e~al~~L~nLa~~~~  418 (565)
                      .|...+++..++..|++ .++                                     +.+....-.|+++|+||...+-
T Consensus       458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl  537 (791)
T KOG1222|consen  458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL  537 (791)
T ss_pred             ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence            66665555444443333 111                                     1234455689999999999999


Q ss_pred             cHHHHhcCCCCHHHHHHHhhcC--CHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC
Q 008437          419 GKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG  482 (565)
Q Consensus       419 ~r~~i~~~~g~v~~Lv~lL~~~--s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~  482 (565)
                      ..+.|+.....||.+-..|..+  .....-..+-.+..+++ +..+...+..+|+|+.|+.|+..+
T Consensus       538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~  602 (791)
T KOG1222|consen  538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQAC  602 (791)
T ss_pred             CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhh
Confidence            9999999889999999888764  23334444444444444 444666777889999999887654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.30  E-value=4.2e-10  Score=123.78  Aligned_cols=275  Identities=17%  Similarity=0.182  Sum_probs=212.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      ....+...|.+. ++.+|.-+++.|+.++.+++.....+.+.+.++.++..|.+    ++..+...|+.+|.+|+. ++.
T Consensus        78 ~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~----~d~~Va~~A~~~L~~l~~-~~~  151 (503)
T PF10508_consen   78 YQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD----PDLSVAKAAIKALKKLAS-HPE  151 (503)
T ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC----CcHHHHHHHHHHHHHHhC-Cch
Confidence            345566778876 89999999999999998777777778889999999999988    789999999999999996 455


Q ss_pred             hhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437          297 NKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS  373 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs  373 (565)
                      .-..++..+.+..|..++..++  .+-.+..++.+++.. ++....+..+|.++.+++.|+++ |.-++.+|+.+|..|+
T Consensus       152 ~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La  230 (503)
T PF10508_consen  152 GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELA  230 (503)
T ss_pred             hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHH
Confidence            6667888888999999998743  356688888888765 56667777789999999999997 9999999999999999


Q ss_pred             cCCCChHHHHHcCchHHHhhccCCC--Ch----HHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHH
Q 008437          374 TIPSNIPNLLSAGIISGLQSLAVPG--DP----MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ  447 (565)
Q Consensus       374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~--~~----~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~  447 (565)
                      ..+.+...+.+.|+++.|+.++.+.  ++    -..--.+....+++... ....+...+..+..|.+++.+.++..+..
T Consensus       231 ~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~-~~~v~~~~p~~~~~l~~~~~s~d~~~~~~  309 (503)
T PF10508_consen  231 ETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS-PQEVLELYPAFLERLFSMLESQDPTIREV  309 (503)
T ss_pred             cChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHhCCCChhHHHH
Confidence            9889999999999999999966432  22    12223446666777742 22222233456666777778889999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHh-CCcHHHH----HHhhhcCChhHHHHHHHHHHHHHh
Q 008437          448 AVSCLFLLCNGNEKCCQMVLQ-EGVIPAL----VSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       448 Av~~L~~Lc~~~~~~~~~v~~-~G~v~~L----v~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      |+.+|..||...++....... .+.+...    .....++....|.++...|..+-.
T Consensus       310 A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~  366 (503)
T PF10508_consen  310 AFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT  366 (503)
T ss_pred             HHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence            999999999877754444233 3444444    345666788889888888888743

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.20  E-value=1.5e-10  Score=101.22  Aligned_cols=116  Identities=28%  Similarity=0.267  Sum_probs=104.1

Q ss_pred             hccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC-CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc
Q 008437          340 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA  418 (565)
Q Consensus       340 I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~-~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~  418 (565)
                      +.+.|+++.|+++|.++ +...+..|+.+|.+++.. ++.+..+++.|+++.|++++.+.+..++..++++|.||+....
T Consensus         3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            45679999999999998 899999999999999987 6788899999999999998888899999999999999999775


Q ss_pred             cH-HHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437          419 GK-EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN  457 (565)
Q Consensus       419 ~r-~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~  457 (565)
                      .. ..+.. .|+++.|+++|...+...++.|+++|.+||.
T Consensus        82 ~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            44 44555 4999999999999999999999999999984

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=1.5e-10  Score=119.86  Aligned_cols=217  Identities=20%  Similarity=0.242  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC
Q 008437          279 AQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK  356 (565)
Q Consensus       279 ~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~  356 (565)
                      +...|+..|+||+. +-.....|+.-..+..||+.|+..+.  .......|..||..++||..+++.|.++.|++++...
T Consensus       279 LLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~  357 (791)
T KOG1222|consen  279 LLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ  357 (791)
T ss_pred             HHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence            44667788999984 45556677788899999999987653  3446777888999999999999999999999999988


Q ss_pred             CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHH
Q 008437          357 TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATV  436 (565)
Q Consensus       357 ~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~l  436 (565)
                       +++.++..+..|+|||.+..++.++|..|.+|.|+.++.+....  .-|+.+|..++..+..+..+.-+ .+|+.|.+.
T Consensus       358 -h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayT-dci~~lmk~  433 (791)
T KOG1222|consen  358 -HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYT-DCIKLLMKD  433 (791)
T ss_pred             -CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHH-HHHHHHHHH
Confidence             99999999999999999999999999999999999988765443  56899999999887777766665 899999998


Q ss_pred             hhcCCHHHHHHHH-HHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcccCCCC
Q 008437          437 LDTGELIEQEQAV-SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPP  507 (565)
Q Consensus       437 L~~~s~~~~e~Av-~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~~~~~  507 (565)
                      +..+.......++ +.-.|||.+.. +.+.+.+..++..|++....      -+-..+++.+|...|++.+.
T Consensus       434 v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k------~~D~lLmK~vRniSqHeg~t  498 (791)
T KOG1222|consen  434 VLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIK------SRDLLLMKVVRNISQHEGAT  498 (791)
T ss_pred             HHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhc------ccchHHHHHHHHhhhccchH
Confidence            7765444333443 34467887665 46666676677888765432      33345677777777777654

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.18  E-value=5.4e-10  Score=97.71  Aligned_cols=117  Identities=22%  Similarity=0.233  Sum_probs=108.0

Q ss_pred             HHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC-cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437          381 NLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN  459 (565)
Q Consensus       381 ~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~-~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~  459 (565)
                      .+++.|+++.|++++.+++..+++.++.+|.+++.. ++.+..++.. |+++.|+++|.+.++.+++.|+++|.+|+...
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            467899999999988888899999999999999997 7788888875 99999999999999999999999999999988


Q ss_pred             hHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          460 EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       460 ~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      +.....+.+.|+++.|+.++..++..+++.|..+|.+|.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            777888889999999999999999999999999999875

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.16  E-value=1.7e-11  Score=87.35  Aligned_cols=39  Identities=36%  Similarity=0.869  Sum_probs=31.2

Q ss_pred             ccccccccCCceecCCCcccchHHHHHHHhcCC---CCCCCC
Q 008437           75 CPISLQLMYDPVIIASGQTYERICIEKWLSDGH---STCPKT  113 (565)
Q Consensus        75 CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~---~~cP~t  113 (565)
                      ||||+++|+|||+++|||+||+.||++|+.+..   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999998632   469976

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.12  E-value=2e-09  Score=110.55  Aligned_cols=278  Identities=12%  Similarity=0.085  Sum_probs=211.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCC---HHHHHHHHHHHHHhhccCc
Q 008437          219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERN---SYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~---~~~q~~A~~aL~nLa~~~~  295 (565)
                      ..|.+...+. +.++-.+..++|.+++..+.++|..+.+.|+-..++++|..-+...+   .+....+...|.|-...++
T Consensus        90 e~Lrq~psS~-d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~  168 (604)
T KOG4500|consen   90 ELLRQTPSSP-DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSR  168 (604)
T ss_pred             HHHHhCCCCC-cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcH
Confidence            3444444554 78888999999999999999999999999998888888875443333   3556667788999888888


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCc----HHHHHHHHHHHhcC-CCC-CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSN----SHGAATALYLNLSF-LDD-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL  369 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~----~~~~A~aaL~nLs~-~~~-~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL  369 (565)
                      +.+.++++.|+++.|..++.=+.    -.+...+..+||.. ..+ .+....+......|+++|.+...++..+-...+|
T Consensus       169 ~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feil  248 (604)
T KOG4500|consen  169 ELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEIL  248 (604)
T ss_pred             HHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHH
Confidence            88999999999999999886442    23445555555433 222 2344445677788999998776777888899999


Q ss_pred             HHhccCCCChHHHHHcCchHHHhhccCC-CC-------hHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCC
Q 008437          370 YNLSTIPSNIPNLLSAGIISGLQSLAVP-GD-------PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGE  441 (565)
Q Consensus       370 ~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~-~~-------~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s  441 (565)
                      ...+.++..+..+++.|.+.-+++++.. .+       ...-..+......|...++.-..+...+.++..++..+++.+
T Consensus       249 a~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d  328 (604)
T KOG4500|consen  249 AKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDD  328 (604)
T ss_pred             HHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCc
Confidence            9999999999999999999999997754 22       222334444555555566666677776558889999999888


Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhh-----cCChhHHHHHHHHHHHHH
Q 008437          442 LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV-----NGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       442 ~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~-----~~s~~~k~~A~~lL~~L~  498 (565)
                      ...+-.++-++.|+++++. .+..+++.|.+.+|++++.     .|+-+.+..+..+||+|.
T Consensus       329 ~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~  389 (604)
T KOG4500|consen  329 SNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM  389 (604)
T ss_pred             hhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence            8899999999999999987 4666788899999987543     367777888888888876

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.08  E-value=7e-11  Score=110.76  Aligned_cols=58  Identities=28%  Similarity=0.614  Sum_probs=51.6

Q ss_pred             CCCcccccccccccCCceecCCCcccchHHHHHHHhc---------------CCCCCCCCCCCCCCCCCcccH
Q 008437           69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD---------------GHSTCPKTQQKLPHLCLTPNY  126 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~---------------~~~~cP~t~~~l~~~~l~pn~  126 (565)
                      ..++|.||||++.++|||+++|||.||+.||.+|+..               +...||.|+.+++...++|.+
T Consensus        15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            4578999999999999999999999999999999852               246799999999999999985

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.06  E-value=1.8e-10  Score=120.53  Aligned_cols=72  Identities=24%  Similarity=0.459  Sum_probs=64.7

Q ss_pred             CCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 008437           67 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN  139 (565)
Q Consensus        67 ~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~  139 (565)
                      ..+...|.||||.++|.+||+++|||+||..||..|+.. ...||.|+.++....+.+|+.|.++|+.|....
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R   92 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR   92 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence            345678999999999999999999999999999999986 458999999998778999999999999997644

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.96  E-value=2.2e-07  Score=102.43  Aligned_cols=279  Identities=15%  Similarity=0.133  Sum_probs=206.1

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.+..++..|.+. +.++...|+..|..+++.. .....+...+.+..|..++..    .+..++.....++.+++..++
T Consensus       119 ~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~----~~~~vR~Rv~el~v~i~~~S~  192 (503)
T PF10508_consen  119 ELLPLIIQCLRDP-DLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQ----SSDIVRCRVYELLVEIASHSP  192 (503)
T ss_pred             cHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcCH
Confidence            4567788889887 9999999999999999754 455567788889999999976    467788889999999987778


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC-CCH---H-HHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-TEH---Q-CKLDALHA  368 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~-~~~---~-~~~~Al~a  368 (565)
                      +....+.+.|.++.++..|++.+.  +.+|+.+|..|+..+.+...+.+.|+++.|+.++... .++   . ..-..+..
T Consensus       193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence            888888889999999999998764  6779999999999988999999999999999999754 123   1 12223355


Q ss_pred             HHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH-hcCCCCHHHHHHH----hhcCCHH
Q 008437          369 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM-NSTPGLVSGLATV----LDTGELI  443 (565)
Q Consensus       369 L~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i-~~~~g~v~~Lv~l----L~~~s~~  443 (565)
                      ..+++...+....-.--..+..|.+++.+.+...+..|+.+|..++...+|+..+ ..+++.+..+++.    ..++...
T Consensus       273 ~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~  352 (503)
T PF10508_consen  273 FGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE  352 (503)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence            5666664332222111234445555667788999999999999999999999999 5554454444444    4456778


Q ss_pred             HHHHHHHHHHHhhcCChH----H----HHHH---HhCCcHH-HHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          444 EQEQAVSCLFLLCNGNEK----C----CQMV---LQEGVIP-ALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       444 ~~e~Av~~L~~Lc~~~~~----~----~~~v---~~~G~v~-~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      .+-.++.+|.+|-...+.    .    ....   ...+-.. .|+.++...=+.+|-.|-.+|+.|..+
T Consensus       353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            999999999998432221    1    1111   1123333 556777777789999999999998754

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=6.5e-10  Score=106.63  Aligned_cols=76  Identities=36%  Similarity=0.424  Sum_probs=71.3

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV  141 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~  141 (565)
                      ..++|+.++|-|+.++|+|||+.++|.||+|..|++++..-....|+|+.+|+...++||..|+..|..|...|..
T Consensus       205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w  280 (284)
T KOG4642|consen  205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW  280 (284)
T ss_pred             cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence            4568999999999999999999999999999999999998677899999999999999999999999999998864

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.87  E-value=6.4e-10  Score=84.57  Aligned_cols=44  Identities=36%  Similarity=0.745  Sum_probs=31.5

Q ss_pred             CcccccccccccCCceec-CCCcccchHHHHHHHh-cCCCCCCCCC
Q 008437           71 EELRCPISLQLMYDPVII-ASGQTYERICIEKWLS-DGHSTCPKTQ  114 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~-~~~~~cP~t~  114 (565)
                      -.|.||||+..|+|||+. .|||+|||++|.+|+. .+...||+.|
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            468999999999999985 7999999999999994 3456799954

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.85  E-value=1.1e-07  Score=98.02  Aligned_cols=277  Identities=16%  Similarity=0.093  Sum_probs=198.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc-cC--CCH-HHHHHHHHHHHHhhccCc
Q 008437          220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-CE--RNS-YAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~-~s--~~~-~~q~~A~~aL~nLa~~~~  295 (565)
                      .+++.|.+.-.++.+.-..+.+...+ +++..+..+++.|.++-++.++..-. .+  .+. ..-..++....-|..+ +
T Consensus       227 ~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG-D  304 (604)
T KOG4500|consen  227 MLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG-D  304 (604)
T ss_pred             HHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC-c
Confidence            34444443323334433445555555 78889999999999999999997621 11  111 1122233322223333 3


Q ss_pred             hhhHHHHhcC-chHHHHHHhcCCcHH--HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC----CCHHHHHHHHHH
Q 008437          296 RNKELMLAAG-VIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK----TEHQCKLDALHA  368 (565)
Q Consensus       296 ~nk~~i~~~G-~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~----~~~~~~~~Al~a  368 (565)
                      +.-..+...+ .+..++.-+++.+..  ..++-++.|++..+++...+++.|.+..|+.+|...    .+.+.+.+++.|
T Consensus       305 eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA  384 (604)
T KOG4500|consen  305 ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA  384 (604)
T ss_pred             hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence            3433344444 788888888887654  346667889999999999999999999999999641    277899999999


Q ss_pred             HHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc-cHHHHhcCCCCHHHHHHHhhcCCHH-HHH
Q 008437          369 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELI-EQE  446 (565)
Q Consensus       369 L~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~-~r~~i~~~~g~v~~Lv~lL~~~s~~-~~e  446 (565)
                      |+||...-.||..++.+|+++.++..++...+.++..-+++|+.+....+ ...++..++..+..|++.-.+.+-. +.-
T Consensus       385 LRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~g  464 (604)
T KOG4500|consen  385 LRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAG  464 (604)
T ss_pred             HHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhh
Confidence            99999999999999999999999998888888999999999999988766 5557777777778888877664433 566


Q ss_pred             HHHHHHHHhhcCCh--HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          447 QAVSCLFLLCNGNE--KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       447 ~Av~~L~~Lc~~~~--~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      ...+.|..+-+++.  .....+-+.|+|..++.......-..+..|.-+|-.+.
T Consensus       465 ESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~  518 (604)
T KOG4500|consen  465 ESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE  518 (604)
T ss_pred             hhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence            67777777777743  34455567788998888877777777777776666555

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.84  E-value=6.3e-08  Score=100.36  Aligned_cols=232  Identities=16%  Similarity=0.124  Sum_probs=161.6

Q ss_pred             CCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhc------CchHHHHHHhcCCcH--HHHHHHHHHHh
Q 008437          259 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA------GVIPLLEKMISNSNS--HGAATALYLNL  330 (565)
Q Consensus       259 G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~------G~i~~Lv~lL~s~~~--~~~A~aaL~nL  330 (565)
                      +....++.+|...  +.+.++.+..+..+-.+...++.....+...      ....++++++.+++.  ...|+.+|..|
T Consensus        55 ~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L  132 (312)
T PF03224_consen   55 QYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL  132 (312)
T ss_dssp             -------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            3456667777653  2467788888888888875555444444441      257888888887764  45577788887


Q ss_pred             cCCCCCchhhccCCchHHHHHHhcCCC---CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhcc-------CCCCh
Q 008437          331 SFLDDAKPIIGSSHAVPFLVELCKGKT---EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA-------VPGDP  400 (565)
Q Consensus       331 s~~~~~k~~I~~~g~i~~Lv~lL~~~~---~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll-------~~~~~  400 (565)
                      ......+..-...+.++.++++|.+..   +.+.+..|+.+|.+|...++.|..+.+.|+++.|+.++       ...+.
T Consensus       133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~  212 (312)
T PF03224_consen  133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI  212 (312)
T ss_dssp             HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred             HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence            766554444333567788888887631   34566889999999999999999999999999999976       22456


Q ss_pred             HHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChH-HHHHHHhCCcHHHHHHh
Q 008437          401 MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEK-CCQMVLQEGVIPALVSI  478 (565)
Q Consensus       401 ~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~-~~~~v~~~G~v~~Lv~L  478 (565)
                      .++..++-+||.|+..++....+..+ +.|+.|++++.. ..+++..-++++|.|+...+.. ....|+..|+.+.|-.|
T Consensus       213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~-~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L  291 (312)
T PF03224_consen  213 QLQYQALLCLWLLSFEPEIAEELNKK-YLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL  291 (312)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHhcc-chHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence            77899999999999999999999987 699999999986 5788999999999999987763 67888888888887766


Q ss_pred             hhc--CChhHHHHHHHH
Q 008437          479 SVN--GSTRGRDKAQRL  493 (565)
Q Consensus       479 ~~~--~s~~~k~~A~~l  493 (565)
                      ...  .++...+--..+
T Consensus       292 ~~rk~~Dedl~edl~~L  308 (312)
T PF03224_consen  292 SERKWSDEDLTEDLEFL  308 (312)
T ss_dssp             HSS--SSHHHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHHH
Confidence            665  567666554444

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.9e-09  Score=120.19  Aligned_cols=111  Identities=23%  Similarity=0.323  Sum_probs=91.9

Q ss_pred             ccccccCCCCCCchhhHHHHHhhhccCCCCCC--------------------CCCCCCCCCCCCcccccccccccCCcee
Q 008437           28 IQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPN--------------------NRRSGQMPLPPEELRCPISLQLMYDPVI   87 (565)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~p~~f~CpI~~~~m~dPV~   87 (565)
                      ...-+-..||+|+.+.|..+.+.++....++.                    ...+++.+++|++|..||+..+|+|||+
T Consensus       806 F~~avA~D~RSys~~lF~~a~~~~~k~~l~~~~~Ie~~s~la~~~~~~~~~~~~eee~l~dvpdef~DPlm~Tlm~dPV~  885 (943)
T KOG2042|consen  806 FVEAVAKDGRSYSEELFNHAISILRKRILKSSRQIEEFSELAERVEATASIDAEEEEELGDVPDEFLDPLMSTLMSDPVV  885 (943)
T ss_pred             HHHHHhccccccCHHHHhhhHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhCccccccCCCCcc
Confidence            33444556999999999999887744433321                    1113457789999999999999999999


Q ss_pred             cC-CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 008437           88 IA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN  139 (565)
Q Consensus        88 ~~-~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~  139 (565)
                      +| +|+|-||+.|++++.. ..+.|.|+++|+.+.++||..|+.-|+.|..++
T Consensus       886 LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek  937 (943)
T KOG2042|consen  886 LPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK  937 (943)
T ss_pred             CCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence            98 9999999999999985 678999999999999999999999999997754

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.79  E-value=3.5e-09  Score=74.42  Aligned_cols=38  Identities=39%  Similarity=0.929  Sum_probs=33.4

Q ss_pred             ccccccccCCc-eecCCCcccchHHHHHHHhcCCCCCCCC
Q 008437           75 CPISLQLMYDP-VIIASGQTYERICIEKWLSDGHSTCPKT  113 (565)
Q Consensus        75 CpI~~~~m~dP-V~~~~g~ty~r~~I~~~~~~~~~~cP~t  113 (565)
                      ||||.+.+.|| |+++|||+||+.||++|+.. +..||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 57899999999999999998 7889986

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.77  E-value=8.4e-07  Score=94.46  Aligned_cols=272  Identities=17%  Similarity=0.090  Sum_probs=193.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHH----HHHHHhcccccCCCHHHHHHHHHHHHHhhc
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVV----ALLRFLESAVCERNSYAQEIGAMALFNLAV  292 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~----~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~  292 (565)
                      -+..++..|... +.-++..|+..|..++..+.....    ....+    .|...|.+.   .+...+..|+.+|..|..
T Consensus       102 ~~~~fl~lL~~~-d~~i~~~a~~iLt~l~~~~~~~~~----~~~l~~~~~~l~~~l~~~---~~~~~~~~~v~~L~~LL~  173 (429)
T cd00256         102 TWEPFFNLLNRQ-DQFIVHMSFSILAKLACFGLAKME----GSDLDYYFNWLKEQLNNI---TNNDYVQTAARCLQMLLR  173 (429)
T ss_pred             chHHHHHHHcCC-chhHHHHHHHHHHHHHhcCccccc----hhHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHhC
Confidence            456777888776 888999999999999865443211    11333    334444432   246677888889988875


Q ss_pred             cCchhhHHHHhcCchHHHHHHhcCCc----HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437          293 NNNRNKELMLAAGVIPLLEKMISNSN----SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA  368 (565)
Q Consensus       293 ~~~~nk~~i~~~G~i~~Lv~lL~s~~----~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a  368 (565)
                       .++.|..+.+.++++.|+.+|+...    ..-.++-+++.||..++....+...+.|+.|+++++......+.+-++.+
T Consensus       174 -~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~  252 (429)
T cd00256         174 -VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAI  252 (429)
T ss_pred             -CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence             5789999999999999999998633    23448888899998877666666679999999999987677889999999


Q ss_pred             HHHhccCC-------CChHHHHHcCchHHHhhccCC--CChHHHHHHH-------HHHHHHhcCc---------------
Q 008437          369 LYNLSTIP-------SNIPNLLSAGIISGLQSLAVP--GDPMWTEKSL-------AVLLNLAASA---------------  417 (565)
Q Consensus       369 L~nLs~~~-------~nk~~iv~~G~v~~Lv~Ll~~--~~~~~~e~al-------~~L~nLa~~~---------------  417 (565)
                      |.||....       .....|++.|+++.|-.|...  .|+.+.+..-       ..+..|++.+               
T Consensus       253 l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp  332 (429)
T cd00256         253 FRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSP  332 (429)
T ss_pred             HHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCC
Confidence            99998743       234567777776655555433  3554443222       2223333322               


Q ss_pred             ---------ccHHHHhcCC-CCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhH
Q 008437          418 ---------AGKEEMNSTP-GLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRG  486 (565)
Q Consensus       418 ---------~~r~~i~~~~-g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~  486 (565)
                               +|...+-+.. ..+..|+++|.. .++....-|+-=+..++++-+.-+..+.+-|+=..++.|+.+.++++
T Consensus       333 ~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~V  412 (429)
T cd00256         333 VHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNV  412 (429)
T ss_pred             CCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHH
Confidence                     3444444332 256788899864 56777777777888889877766777778898888899999999999


Q ss_pred             HHHHHHHHHHH
Q 008437          487 RDKAQRLLMLF  497 (565)
Q Consensus       487 k~~A~~lL~~L  497 (565)
                      |..|-..++.|
T Consensus       413 r~eAL~avQkl  423 (429)
T cd00256         413 RYEALLAVQKL  423 (429)
T ss_pred             HHHHHHHHHHH
Confidence            99999888875

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK09687 putative lyase; Provisional

Probab=98.75  E-value=1.3e-06  Score=89.01  Aligned_cols=232  Identities=14%  Similarity=0.106  Sum_probs=116.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN  297 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n  297 (565)
                      +..|+..|.+. +..+|..|+..|..+-           ...+++.+..++.+    .++.++..|+++|..|.. .+..
T Consensus        25 ~~~L~~~L~d~-d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~-~~~~   87 (280)
T PRK09687         25 DDELFRLLDDH-NSLKRISSIRVLQLRG-----------GQDVFRLAIELCSS----KNPIERDIGADILSQLGM-AKRC   87 (280)
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhC----CCHHHHHHHHHHHHhcCC-Cccc
Confidence            35667777665 7778877777776553           13345666666655    567777777777777642 1111


Q ss_pred             hHHHHhcCchHHHHHHh-cCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437          298 KELMLAAGVIPLLEKMI-SNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST  374 (565)
Q Consensus       298 k~~i~~~G~i~~Lv~lL-~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~  374 (565)
                           ...+++.|..++ ..++  .+..|+.+|.++......    ....+++.|..++.+. +..++..|+.+|..+. 
T Consensus        88 -----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~-  156 (280)
T PRK09687         88 -----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDK-STNVRFAVAFALSVIN-  156 (280)
T ss_pred             -----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCC-CHHHHHHHHHHHhccC-
Confidence                 123456666653 3332  244566666655321110    0112334444444444 5555555555553331 


Q ss_pred             CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008437          375 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFL  454 (565)
Q Consensus       375 ~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~  454 (565)
                               ...+++.|+.++.+.+..++..|+.+|..+...         .+..++.|+.+|.+.+..++..|+..|..
T Consensus       157 ---------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~  218 (280)
T PRK09687        157 ---------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRIEAIIGLAL  218 (280)
T ss_pred             ---------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence                     112455555555555555555555555554211         11333444444444444555555444432


Q ss_pred             hhcCC-----------hHHHHH-------HHhCCcHHHHHHhhh-cCChhHHHHHHHHHH
Q 008437          455 LCNGN-----------EKCCQM-------VLQEGVIPALVSISV-NGSTRGRDKAQRLLM  495 (565)
Q Consensus       455 Lc~~~-----------~~~~~~-------v~~~G~v~~Lv~L~~-~~s~~~k~~A~~lL~  495 (565)
                      +-...           +..+..       +-..-++|.|..++. +.+.+++.+|.+.|.
T Consensus       219 ~~~~~av~~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        219 RKDKRVLSVLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             cCChhHHHHHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence            11100           000000       001135777777765 678888888877765

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=1.4e-08  Score=108.06  Aligned_cols=104  Identities=22%  Similarity=0.221  Sum_probs=87.7

Q ss_pred             CCCCCchhhHHHHHhhhccCCCCC--------------------CCCCCCCCCCCCCcccccccccccCCceecC-CCcc
Q 008437           35 GVHNGNEHAFDRQLSKLCSFNFRP--------------------NNRRSGQMPLPPEELRCPISLQLMYDPVIIA-SGQT   93 (565)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~p~~f~CpI~~~~m~dPV~~~-~g~t   93 (565)
                      .+|+|.-+.|.++.+.+..-..+.                    ..-.++++.++|++|+.|++..+|+|||+++ +|.|
T Consensus       797 D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~r~~ea~EeED~GDvPDeFlDPLmftimkdPV~Lp~S~i~  876 (929)
T COG5113         797 DKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKVRVIEAVEEEDMGDVPDEFLDPLMFTIMKDPVKLPTSRIT  876 (929)
T ss_pred             ccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchhhhCchhhhcccCCeeccccccc
Confidence            389999999999986654444331                    1112567899999999999999999999997 8999


Q ss_pred             cchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 008437           94 YERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN  139 (565)
Q Consensus        94 y~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~  139 (565)
                      .||+.|..++-. ..|.|..+.||+.++++||-.||.-|-.|....
T Consensus       877 IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k  921 (929)
T COG5113         877 IDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK  921 (929)
T ss_pred             ccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence            999999999985 678999999999999999999999999886543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1e-06  Score=97.35  Aligned_cols=256  Identities=15%  Similarity=0.116  Sum_probs=192.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-cCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLK-DDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      .+..|+.-|....++..|.+|+.+|..... .+++.-..+--.-++|.|+.+|+..   .+.+++..|+++|.+|+---+
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E---~n~DIMl~AcRaltyl~evlP  244 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE---HNFDIMLLACRALTYLCEVLP  244 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhcc
Confidence            567888888876688889999999988754 3444444444577899999999875   578999999999999987678


Q ss_pred             hhhHHHHhcCchHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          296 RNKELMLAAGVIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      +....+++.++||.|+.-|..-   +..|++..+|..++.. .. .+|...|+|-..+..|+== +..+++.|+.+..|.
T Consensus       245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~-H~-~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~  321 (1051)
T KOG0168|consen  245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR-HP-KAILQAGALSAVLSYLDFF-SIHAQRVALAIAANC  321 (1051)
T ss_pred             chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-cc-HHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            8889999999999999887653   4567888888888754 23 3455689998888887644 566899999999999


Q ss_pred             ccC--CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc----CcccHHHHhcCCCCHHHHHHHhhcC----CH
Q 008437          373 STI--PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTG----EL  442 (565)
Q Consensus       373 s~~--~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~----~~~~r~~i~~~~g~v~~Lv~lL~~~----s~  442 (565)
                      |..  .+.=..++  .++|.|..+|...+....+.++-.+..++.    .++--.++..+ |.|....++|...    +.
T Consensus       322 Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~qLlsvt~t~Ls~  398 (1051)
T KOG0168|consen  322 CKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQQLLSVTPTILSN  398 (1051)
T ss_pred             HhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHHHHHhcCcccccc
Confidence            953  23333333  378999998887788888888888887776    23344466666 8999999998653    23


Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc
Q 008437          443 IEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN  481 (565)
Q Consensus       443 ~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~  481 (565)
                      ...--.++.|..+|++++-....++..++...|..++..
T Consensus       399 ~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  399 GTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             cchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            344556777788888877667777788888887766544

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.68  E-value=3.1e-07  Score=95.23  Aligned_cols=220  Identities=22%  Similarity=0.176  Sum_probs=159.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc------cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhc
Q 008437          219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA------NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV  292 (565)
Q Consensus       219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~------~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~  292 (565)
                      ..++..+ + .+.+.....+..|..+..+++.....+..      ...+.++++++.+    +|..++..|+..|..|..
T Consensus        61 l~lL~~~-~-~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~----~D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   61 LNLLNKL-S-SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR----NDSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             -HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-----SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHc-c-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC----CCHHHHHHHHHHHHHHHH
Confidence            3455555 2 37888889999999999888766666554      1267888888876    689999999999999975


Q ss_pred             cCchhhHHHHhcCchHHHHHHhcCCc------HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHh------cCCCCHH
Q 008437          293 NNNRNKELMLAAGVIPLLEKMISNSN------SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC------KGKTEHQ  360 (565)
Q Consensus       293 ~~~~nk~~i~~~G~i~~Lv~lL~s~~------~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL------~~~~~~~  360 (565)
                      ..+.. ..-...+.++.++..|.+-.      ....|+.+|.+|...+++|..+.+.++++.|+.+|      .+..+.+
T Consensus       135 ~~~~~-~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q  213 (312)
T PF03224_consen  135 QGPKR-SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ  213 (312)
T ss_dssp             STTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred             cCCcc-ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence            43322 22222567788888887531      12558899999999999999999999999999999      3344678


Q ss_pred             HHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCC-CChHHHHHHHHHHHHHhcCcc--cHHHHhcCCCCHHHHHHHh
Q 008437          361 CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAA--GKEEMNSTPGLVSGLATVL  437 (565)
Q Consensus       361 ~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~-~~~~~~e~al~~L~nLa~~~~--~r~~i~~~~g~v~~Lv~lL  437 (565)
                      .+-.++-+|+-|+.+++....+...+.|+.|+++++. ....+..-++++|.||.....  ....|+.+ +++ .+++.|
T Consensus       214 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~-~~l-~~l~~L  291 (312)
T PF03224_consen  214 LQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLC-GLL-KTLQNL  291 (312)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH--HH-HHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHc-cHH-HHHHHH
Confidence            8999999999999999999999999999999996644 567889999999999999777  78888875 444 445555


Q ss_pred             hc---CCHHHHHH
Q 008437          438 DT---GELIEQEQ  447 (565)
Q Consensus       438 ~~---~s~~~~e~  447 (565)
                      ..   ++++..+.
T Consensus       292 ~~rk~~Dedl~ed  304 (312)
T PF03224_consen  292 SERKWSDEDLTED  304 (312)
T ss_dssp             HSS--SSHHHHHH
T ss_pred             hcCCCCCHHHHHH
Confidence            43   46665553

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.67  E-value=9.7e-09  Score=73.26  Aligned_cols=36  Identities=25%  Similarity=0.752  Sum_probs=23.4

Q ss_pred             ccccccccCC----ceecCCCcccchHHHHHHHhcC---CCCCC
Q 008437           75 CPISLQLMYD----PVIIASGQTYERICIEKWLSDG---HSTCP  111 (565)
Q Consensus        75 CpI~~~~m~d----PV~~~~g~ty~r~~I~~~~~~~---~~~cP  111 (565)
                      ||||.+ |.+    ||+++|||+||+.||++++..+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 999    9999999999999999999854   45577

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=5.6e-06  Score=91.14  Aligned_cols=259  Identities=16%  Similarity=0.197  Sum_probs=189.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      |.|+.|+.++.+..-.+.|+.|+..|+.+++   .+|..++..| +++|+..|...  ..|+++-..++.+++++..+++
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D--~~D~E~ik~~LdTl~il~~~dd   95 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRD--YMDPEIIKYALDTLLILTSHDD   95 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcCc
Confidence            6889999999887567999999999999996   5788887776 89999999873  3688999999999999976543


Q ss_pred             ------hhh----------HHHH-hcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC--CCCchhhcc-CCchHHHHHHh
Q 008437          296 ------RNK----------ELML-AAGVIPLLEKMISNSN--SHGAATALYLNLSFL--DDAKPIIGS-SHAVPFLVELC  353 (565)
Q Consensus       296 ------~nk----------~~i~-~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~--~~~k~~I~~-~g~i~~Lv~lL  353 (565)
                            ..+          ..++ ..+-|..|+..+..-+  .+-.++-.+.+|-..  .+.+.++.. +-+|..|+.+|
T Consensus        96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL  175 (970)
T KOG0946|consen   96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL  175 (970)
T ss_pred             chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence                  112          2233 3478888888887654  345577777775433  456666655 68999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCChHHHHH-cCchHHHhhccCC-C---ChHHHHHHHHHHHHHhcCcccHHHHhcCCC
Q 008437          354 KGKTEHQCKLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVP-G---DPMWTEKSLAVLLNLAASAAGKEEMNSTPG  428 (565)
Q Consensus       354 ~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~-~G~v~~Lv~Ll~~-~---~~~~~e~al~~L~nLa~~~~~r~~i~~~~g  428 (565)
                      ++. ...++..|+-.|..|+.+..+..++|. .++...|+.++.. |   ...+.+.|+.+|-||-.....-..+...++
T Consensus       176 ~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~  254 (970)
T KOG0946|consen  176 RDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS  254 (970)
T ss_pred             hhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence            987 777999999999999998888888876 7899999997744 2   346789999999999986554444444459


Q ss_pred             CHHHHHHHhhc---CCH----HH------HHHHHHHHHHhhcCC------hHHHHHHHhCCcHHHHHHhhhc
Q 008437          429 LVSGLATVLDT---GEL----IE------QEQAVSCLFLLCNGN------EKCCQMVLQEGVIPALVSISVN  481 (565)
Q Consensus       429 ~v~~Lv~lL~~---~s~----~~------~e~Av~~L~~Lc~~~------~~~~~~v~~~G~v~~Lv~L~~~  481 (565)
                      .|+.|.++|..   ++.    +.      --.|+.++..|...+      ..+.+++.+.+++..|..++..
T Consensus       255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~  326 (970)
T KOG0946|consen  255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMH  326 (970)
T ss_pred             cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcC
Confidence            99999998864   332    11      112333444444322      1233566678889998765444

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.61  E-value=1.6e-08  Score=100.41  Aligned_cols=67  Identities=25%  Similarity=0.446  Sum_probs=62.2

Q ss_pred             CcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 008437           71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEM  138 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~  138 (565)
                      +-++|-||.+.|+-||+++||||||--||.+++.. ++.||.|..++....|+-|..|..+|+.+-..
T Consensus        22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~   88 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFA   88 (442)
T ss_pred             HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence            45899999999999999999999999999999986 88999999999999999999999999998554

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.58  E-value=4.1e-08  Score=69.68  Aligned_cols=39  Identities=41%  Similarity=1.010  Sum_probs=36.3

Q ss_pred             ccccccccCCce-ecCCCcccchHHHHHHHh-cCCCCCCCC
Q 008437           75 CPISLQLMYDPV-IIASGQTYERICIEKWLS-DGHSTCPKT  113 (565)
Q Consensus        75 CpI~~~~m~dPV-~~~~g~ty~r~~I~~~~~-~~~~~cP~t  113 (565)
                      ||||.+.+.+|+ +++|||+|++.||.+|+. .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 889999999999999998 667789986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=5.3e-08  Score=93.12  Aligned_cols=57  Identities=26%  Similarity=0.577  Sum_probs=51.7

Q ss_pred             CCcccccccccccCCceecCCCcccchHHHHHHHhc--CCCCCCCCCCCCCCCCCcccH
Q 008437           70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKTQQKLPHLCLTPNY  126 (565)
Q Consensus        70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~t~~~l~~~~l~pn~  126 (565)
                      -..|.|-||++.-+|||++.|||-||=.||-+|+.-  +...||+|+..++.+.++|-+
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            368999999999999999999999999999999973  456689999999999999965

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.49  E-value=4e-08  Score=74.95  Aligned_cols=58  Identities=21%  Similarity=0.442  Sum_probs=33.8

Q ss_pred             cccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 008437           72 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLI  132 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i  132 (565)
                      -++|++|.++|++||.+ .|.|.||+.||.+.+..   .||+|..|-...++.-|..|..+|
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred             hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence            47899999999999965 79999999999887653   399999998889999999999887

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.46  E-value=2.5e-05  Score=92.14  Aligned_cols=225  Identities=18%  Similarity=0.164  Sum_probs=119.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .+..|+..|.+. ++.+|..|+..|..+.           ..++++.|+..|.+    .+..++..|+.+|..+....+ 
T Consensus       622 ~~~~L~~~L~D~-d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~-  684 (897)
T PRK13800        622 SVAELAPYLADP-DPGVRRTAVAVLTETT-----------PPGFGPALVAALGD----GAAAVRRAAAEGLRELVEVLP-  684 (897)
T ss_pred             hHHHHHHHhcCC-CHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccC-
Confidence            456788888887 9999999999988764           24568888888876    678888888888877632101 


Q ss_pred             hhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-----------CCC--c----hhhccCCchHHHHHHhcCCC
Q 008437          297 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-----------DDA--K----PIIGSSHAVPFLVELCKGKT  357 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-----------~~~--k----~~I~~~g~i~~Lv~lL~~~~  357 (565)
                               ..+.|...|.+.+.  +..|+.+|..+...           ++.  +    ..++..+..+.|..+|.+. 
T Consensus       685 ---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~-  754 (897)
T PRK13800        685 ---------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDE-  754 (897)
T ss_pred             ---------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCC-
Confidence                     12344455554432  22233333322100           000  0    0001111223333444443 


Q ss_pred             CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh
Q 008437          358 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL  437 (565)
Q Consensus       358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL  437 (565)
                      ++.++..++.+|..+...        +...++.|+.++.+.++.++..|+..|..+...+          ..+..|+..|
T Consensus       755 ~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL  816 (897)
T PRK13800        755 NREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAAL  816 (897)
T ss_pred             CHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHh
Confidence            444444444444443221        1123556666666666677777777666653311          1223344455


Q ss_pred             hcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437          438 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF  497 (565)
Q Consensus       438 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L  497 (565)
                      .+.++.++..|+.+|..+..           .-+++.|+.++.+.+..+|..|...|..+
T Consensus       817 ~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        817 RASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             cCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            55555555555555544321           12235566666666666666666666554

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.45  E-value=1.4e-07  Score=70.13  Aligned_cols=47  Identities=28%  Similarity=0.602  Sum_probs=41.1

Q ss_pred             CcccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      +++.|+||++-+.|+++++|||. ||..|+.+|+. ....||.|++++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence            46889999999999999999999 99999999998 5788999998864

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.43  E-value=1.6e-07  Score=92.15  Aligned_cols=49  Identities=20%  Similarity=0.600  Sum_probs=41.7

Q ss_pred             CCCcccccccccccCCc--------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           69 PPEELRCPISLQLMYDP--------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dP--------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      ...+..||||++.+.+|        |+++|||+||+.||.+|+.. +.+||.|++++.
T Consensus       171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            35678999999987764        56689999999999999985 789999998875

>PRK09687 putative lyase; Provisional

Probab=98.42  E-value=7.7e-06  Score=83.32  Aligned_cols=192  Identities=16%  Similarity=0.046  Sum_probs=137.5

Q ss_pred             CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCc
Q 008437          260 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK  337 (565)
Q Consensus       260 ~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k  337 (565)
                      -++.|+.+|.+    .+..++..|+.+|..+.  +         ..+++.+..++.+++.  +..|+.+|..|-..+.. 
T Consensus        24 ~~~~L~~~L~d----~d~~vR~~A~~aL~~~~--~---------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-   87 (280)
T PRK09687         24 NDDELFRLLDD----HNSLKRISSIRVLQLRG--G---------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-   87 (280)
T ss_pred             cHHHHHHHHhC----CCHHHHHHHHHHHHhcC--c---------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-
Confidence            47788888877    78889999999998764  1         3457788888887754  56688888776432211 


Q ss_pred             hhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc
Q 008437          338 PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA  417 (565)
Q Consensus       338 ~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~  417 (565)
                          ...+++.|..++.++.++.++..|+.+|.+++....+.    ..-+++.|..++.+.+..++..++.+|..+..  
T Consensus        88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--  157 (280)
T PRK09687         88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--  157 (280)
T ss_pred             ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence                22467888888444338999999999999997543222    11245556676777788999999999965432  


Q ss_pred             ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHH
Q 008437          418 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM  495 (565)
Q Consensus       418 ~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~  495 (565)
                               ..+++.|+.+|.+.++.++..|+.+|..+...++         .+++.|+.++.+.+..+|..|...|.
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg  217 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLA  217 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence                     3578999999999999999999999998843332         33555666666666667666666664

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=2.5e-05  Score=79.96  Aligned_cols=182  Identities=21%  Similarity=0.179  Sum_probs=142.9

Q ss_pred             CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchH
Q 008437          229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP  308 (565)
Q Consensus       229 ~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~  308 (565)
                      .+.+.+..|+..|..++ ++-++-..+...|++..|+.+|.+    .+..+++.|+++|...+.+|+.....+++.|+++
T Consensus        95 ~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~----~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~  169 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLEN----SDAELRELAARVIGTAVQNNPKSQEQVIELGALS  169 (342)
T ss_pred             CCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcC----CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence            37899999999999999 566788899999999999999988    7899999999999999988899999999999999


Q ss_pred             HHHHHhcCCc---HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCC-CCHHHHHHHHHHHHHhccCCC-ChHHH
Q 008437          309 LLEKMISNSN---SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPS-NIPNL  382 (565)
Q Consensus       309 ~Lv~lL~s~~---~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~-~~~~~~~~Al~aL~nLs~~~~-nk~~i  382 (565)
                      .|+.+|.+..   .+..|..++.+|-.+ ......+-..++...|..+|.++ .+...+..|+-.|..|...+. ....+
T Consensus       170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~  249 (342)
T KOG2160|consen  170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA  249 (342)
T ss_pred             HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            9999998653   245577777776555 34455555567799999999985 378889999999999886543 44444


Q ss_pred             HHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437          383 LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA  415 (565)
Q Consensus       383 v~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~  415 (565)
                      -..|....++.+....+..+.+.++.++..+..
T Consensus       250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            445555556666666666777777776665555

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=2e-07  Score=95.32  Aligned_cols=70  Identities=27%  Similarity=0.569  Sum_probs=61.0

Q ss_pred             CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 008437           69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV  141 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~  141 (565)
                      ..+++.||||++.|++|++++|||+|||.||+.++. +...||.|+. .. ..+.+|..+..+++.....+..
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~~~   79 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLRLS   79 (386)
T ss_pred             ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-hccCccHHHHHHHHHHHhcCCc
Confidence            457899999999999999999999999999999998 6678999986 32 2778999999999998876654

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.37  E-value=2e-07  Score=91.04  Aligned_cols=67  Identities=21%  Similarity=0.314  Sum_probs=60.9

Q ss_pred             CcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 008437           71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEM  138 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~  138 (565)
                      .-++|-||...++-|++++||||||--||.+++.. ++.||+|+.+....-|.-+..++..++.+...
T Consensus        24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~   90 (391)
T COG5432          24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARN   90 (391)
T ss_pred             hHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence            35799999999999999999999999999999986 89999999998888888999999999888654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=7.4e-06  Score=90.80  Aligned_cols=158  Identities=19%  Similarity=0.171  Sum_probs=131.5

Q ss_pred             cCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCccc
Q 008437          342 SSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAG  419 (565)
Q Consensus       342 ~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~  419 (565)
                      -.-.+|.||.||+.+.+.+.+..|++||++|+. .+.....+|+.++||.|++ |+.=....+.|.++.+|..|+...  
T Consensus       209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--  286 (1051)
T KOG0168|consen  209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--  286 (1051)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence            356889999999998889999999999999994 7788999999999999999 776677888999999999998843  


Q ss_pred             HHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          420 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       420 r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      -.+|+.. |++...+.+|+--+..+|..|+++..|.|..=. +.-..++  .++|.|..|+...+.+.-+.+...+..+.
T Consensus       287 ~~AiL~A-G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~  363 (1051)
T KOG0168|consen  287 PKAILQA-GALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIA  363 (1051)
T ss_pred             cHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence            2466665 999999999998889999999999999997321 1223333  35899999999999999999888888887


Q ss_pred             hhcccC
Q 008437          499 EQRQRD  504 (565)
Q Consensus       499 ~~r~~~  504 (565)
                      +.-++.
T Consensus       364 d~f~h~  369 (1051)
T KOG0168|consen  364 DGFQHG  369 (1051)
T ss_pred             HhcccC
Confidence            765554

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.3e-05  Score=82.01  Aligned_cols=182  Identities=16%  Similarity=0.131  Sum_probs=149.3

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHH
Q 008437          275 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVE  351 (565)
Q Consensus       275 ~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~  351 (565)
                      .+.+-++.|+.-|..+. ++-+|-.-+...|+..+++..|.+++.  ++.|+.+|...+.+ +..+..+.+.|+++.|+.
T Consensus        95 ~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            46777888888888886 567788889999999999999988754  67799999987765 677888899999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCC--CChHHHHHHHHHHHHHhcCcccHHHHhcCCC
Q 008437          352 LCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVP--GDPMWTEKSLAVLLNLAASAAGKEEMNSTPG  428 (565)
Q Consensus       352 lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~--~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g  428 (565)
                      +|.+..+..++..|+.|++.|-.+. .....+...++...|...+.+  .+..++.+++..|..|.........++..-+
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~  253 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG  253 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence            9997756778899999999998765 467777888899999997766  6788899999999999885544444555447


Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437          429 LVSGLATVLDTGELIEQEQAVSCLFLLCN  457 (565)
Q Consensus       429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~  457 (565)
                      ....+..+....+....|+|+.++..+..
T Consensus       254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  254 FQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            77777888888889999999998877554

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.31  E-value=5.9e-07  Score=64.30  Aligned_cols=44  Identities=39%  Similarity=0.973  Sum_probs=39.2

Q ss_pred             cccccccccCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437           74 RCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKL  117 (565)
Q Consensus        74 ~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~t~~~l  117 (565)
                      .||||++.+.+|+.+. |||.|++.|+..|+..+...||.|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            4999999999999776 9999999999999998778899998653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.31  E-value=5e-05  Score=89.65  Aligned_cols=227  Identities=18%  Similarity=0.092  Sum_probs=148.5

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.|+..|.+. +..+|..|+..|..+....+          ..+.|...|.+    .++.++..|+.+|..+...+.
T Consensus       652 ~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~----~d~~VR~~A~~aL~~~~~~~~  716 (897)
T PRK13800        652 GFGPALVAALGDG-AAAVRRAAAEGLRELVEVLP----------PAPALRDHLGS----PDPVVRAAALDVLRALRAGDA  716 (897)
T ss_pred             hHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccC----------chHHHHHHhcC----CCHHHHHHHHHHHHhhccCCH
Confidence            3457788888776 99999999999988752111          12455566655    566677777666655421100


Q ss_pred             ------------hhhHHHH----hcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCC
Q 008437          296 ------------RNKELML----AAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT  357 (565)
Q Consensus       296 ------------~nk~~i~----~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~  357 (565)
                                  ..|...+    ..+..+.|..+|..++.  +..++.+|..+...        ....++.|..++.+. 
T Consensus       717 ~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~-  787 (897)
T PRK13800        717 ALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDP-  787 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCC-
Confidence                        0000000    01112333344433321  23334344333210        123478999999988 


Q ss_pred             CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh
Q 008437          358 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL  437 (565)
Q Consensus       358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL  437 (565)
                      ++.++..|+.+|.++-...         .++..|+..+.+.+..++..|+.+|..+..           ...++.|+.+|
T Consensus       788 d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L  847 (897)
T PRK13800        788 DPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEAL  847 (897)
T ss_pred             CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHh
Confidence            8999999999998884321         123557777788889999999999987642           35779999999


Q ss_pred             hcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHH
Q 008437          438 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML  496 (565)
Q Consensus       438 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~  496 (565)
                      .+.+..++..|+.+|..+- .++         .+.+.|..++.+.+..+|..|..+|..
T Consensus       848 ~D~~~~VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        848 TDPHLDVRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             cCCCHHHHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            9999999999999998862 222         236677788889999999999998863

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.29  E-value=3.7e-06  Score=74.26  Aligned_cols=152  Identities=18%  Similarity=0.119  Sum_probs=125.5

Q ss_pred             CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHH
Q 008437          343 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE  422 (565)
Q Consensus       343 ~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~  422 (565)
                      .+.+..||.-..+..+.++++....-|.|.+.++-|-..+.+..+++..+.-+...+..+.+..++.|+|||....+.+.
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~   94 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence            45677788777776689999999999999999999999999999999999977788899999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHH
Q 008437          423 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM  495 (565)
Q Consensus       423 i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~  495 (565)
                      |++. ++++.++..+.+.....--.|+.+|..||..+...+..+....++..+.....+.+.+.+--|...|.
T Consensus        95 I~ea-~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~  166 (173)
T KOG4646|consen   95 IREA-LGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLD  166 (173)
T ss_pred             HHHh-cCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9986 99999999998877888889999999999988766777777776666655444444444444444443

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.27  E-value=5.1e-05  Score=81.02  Aligned_cols=224  Identities=16%  Similarity=0.133  Sum_probs=158.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-----cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-----NGFVVALLRFLESAVCERNSYAQEIGAMALFNLA  291 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-----~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa  291 (565)
                      .+..++..|+.....++....+.-+..+...++..-..+.+     .....+++.+|.+    +|.-++..|+..|..|.
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~----~d~~i~~~a~~iLt~l~  129 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR----QDQFIVHMSFSILAKLA  129 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC----CchhHHHHHHHHHHHHH
Confidence            45667788877657788888888888888776654444444     3567788888875    67788999999888886


Q ss_pred             ccCchhhHHHHhcCchHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCC-CHHHHHHHHH
Q 008437          292 VNNNRNKELMLAAGVIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT-EHQCKLDALH  367 (565)
Q Consensus       292 ~~~~~nk~~i~~~G~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~-~~~~~~~Al~  367 (565)
                      .....+.......-.+..|...|+++   .....++..|..|...+++|..+.+.++++.|+.+|+... +.+.+=.++-
T Consensus       130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll  209 (429)
T cd00256         130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF  209 (429)
T ss_pred             hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence            43322211110011233455556543   2345578889899999999999988889999999998753 5688999999


Q ss_pred             HHHHhccCCCChHHHHHcCchHHHhhccCC-CChHHHHHHHHHHHHHhcCcc-------cHHHHhcCCCCHHHHHHHhhc
Q 008437          368 ALYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAA-------GKEEMNSTPGLVSGLATVLDT  439 (565)
Q Consensus       368 aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~-~~~~~~e~al~~L~nLa~~~~-------~r~~i~~~~g~v~~Lv~lL~~  439 (565)
                      +|+-|+.+++....+.+.|.|+.|+++++. ....+..-++++|.||.....       ....|+.. | ++.++..|..
T Consensus       210 ~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~-l~~~l~~L~~  287 (429)
T cd00256         210 CIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-K-VLKTLQSLEQ  287 (429)
T ss_pred             HHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-C-hHHHHHHHhc
Confidence            999999988877777778999999997654 467888999999999998542       23455653 4 4555565543


Q ss_pred             ---CCHHHHH
Q 008437          440 ---GELIEQE  446 (565)
Q Consensus       440 ---~s~~~~e  446 (565)
                         ++++..+
T Consensus       288 rk~~DedL~e  297 (429)
T cd00256         288 RKYDDEDLTD  297 (429)
T ss_pred             CCCCcHHHHH
Confidence               4555444

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.25  E-value=4.3e-07  Score=65.50  Aligned_cols=40  Identities=33%  Similarity=0.855  Sum_probs=33.7

Q ss_pred             cccccccccC---CceecCCCcccchHHHHHHHhcCCCCCCCCC
Q 008437           74 RCPISLQLMY---DPVIIASGQTYERICIEKWLSDGHSTCPKTQ  114 (565)
Q Consensus        74 ~CpI~~~~m~---dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~  114 (565)
                      .||||++-|.   +++.++|||.|.+.||.+|+.. +.+||+|+
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            4999999884   5667899999999999999987 56999984

...

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.23  E-value=2.8e-05  Score=81.27  Aligned_cols=266  Identities=16%  Similarity=0.154  Sum_probs=182.3

Q ss_pred             hHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc
Q 008437          216 ERYQDFLNVLNEGENL--GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN  293 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~--~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~  293 (565)
                      +++..|++++... +.  .++.+|.+.|..+..  .+||..++..| +..++.+-+.   ...++.+...+.+|.++-++
T Consensus       180 ~~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~---~e~~e~aR~~~~il~~mFKH  252 (832)
T KOG3678|consen  180 GGLDLLLRMFQAP-NLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKE---REPVELARSVAGILEHMFKH  252 (832)
T ss_pred             chHHHHHHHHhCC-chhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhh---cCcHHHHHHHHHHHHHHhhh
Confidence            4567788888876 54  458899999998863  46888888766 5555554433   15678888889999999988


Q ss_pred             CchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC--CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437          294 NNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL  369 (565)
Q Consensus       294 ~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~--~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL  369 (565)
                      +++....++++|++..++--.+..+.  -.+++-+|.|.+.+  .+.+..|.+..+-+-|+-|-.+. +.-.+-.|+-|.
T Consensus       253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del~R~~AClAV  331 (832)
T KOG3678|consen  253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DELLRLHACLAV  331 (832)
T ss_pred             hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHHHHHHHHHHH
Confidence            88889999999999998887776543  46688888887765  45677777777777777777777 778899999999


Q ss_pred             HHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437          370 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV  449 (565)
Q Consensus       370 ~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av  449 (565)
                      +-|+.+.+.-..+.+.|-+..+-.++..-++..-          +. +....+-...+.-+..|+-+|++  ......++
T Consensus       332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------AR-D~hd~aQG~~~d~LqRLvPlLdS--~R~EAq~i  398 (832)
T KOG3678|consen  332 AVLATNKEVEREVRKSGTLALVEPLVASLDPGRF----------AR-DAHDYAQGRGPDDLQRLVPLLDS--NRLEAQCI  398 (832)
T ss_pred             hhhhhhhhhhHHHhhccchhhhhhhhhccCcchh----------hh-hhhhhhccCChHHHHHhhhhhhc--chhhhhhh
Confidence            9999988877666666644322224433333211          11 11112223334567788888873  44445566


Q ss_pred             HHHHHhhcCC----hHH-HHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhccc
Q 008437          450 SCLFLLCNGN----EKC-CQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR  503 (565)
Q Consensus       450 ~~L~~Lc~~~----~~~-~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~  503 (565)
                      ++.+ +|...    ... ...+-+-|+|+.|-.+..+.+...-.-|..+|..+-+.-+.
T Consensus       399 ~AF~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~  456 (832)
T KOG3678|consen  399 GAFY-LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPY  456 (832)
T ss_pred             HHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccCh
Confidence            6654 34321    112 23344559999999998888887778888999988765433

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.00058  Score=68.51  Aligned_cols=268  Identities=16%  Similarity=0.177  Sum_probs=182.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      ...++.+|.+. ++.+|..|+..+-.++..  ..+..... .-.++.|.+++...    ++  -+.|+.+|.|++. +..
T Consensus         5 l~elv~ll~~~-sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~----~~--~~~a~~alVnlsq-~~~   74 (353)
T KOG2973|consen    5 LVELVELLHSL-SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL----DP--AEPAATALVNLSQ-KEE   74 (353)
T ss_pred             HHHHHHHhccC-ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc----cc--ccHHHHHHHHHHh-hHH
Confidence            45788889887 899999999999888765  34444332 55678888888762    22  5678899999985 677


Q ss_pred             hhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhcc-------CCchHHHHHHhcCCCCH-HHHHHHH
Q 008437          297 NKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGS-------SHAVPFLVELCKGKTEH-QCKLDAL  366 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~-------~g~i~~Lv~lL~~~~~~-~~~~~Al  366 (565)
                      .++.++.. .+..++.++-.+.  -....+.+|.||+..++....+..       .|.+...+...+.+.+. .-...-+
T Consensus        75 l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA  153 (353)
T KOG2973|consen   75 LRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLA  153 (353)
T ss_pred             HHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHH
Confidence            78888777 7888888887662  245578889999988765433321       34444444555544221 2345567


Q ss_pred             HHHHHhccCCCChHHHHHcCchH--HHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHH--------
Q 008437          367 HALYNLSTIPSNIPNLLSAGIIS--GLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATV--------  436 (565)
Q Consensus       367 ~aL~nLs~~~~nk~~iv~~G~v~--~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~l--------  436 (565)
                      -++.||+.....|..+.+...++  .|+.+-..++.--+.-.+++|.|.|........++..  .+..|..+        
T Consensus       154 ~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e--~~~lLp~iLlPlagpe  231 (353)
T KOG2973|consen  154 PVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDE--SINLLPAILLPLAGPE  231 (353)
T ss_pred             HHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcc--hHHHHHHHHhhcCCcc
Confidence            77889999888888887755332  2333333233333456789999999887777776652  23333332        


Q ss_pred             ----------------hh-----cCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc-CChhHHHHHHHHH
Q 008437          437 ----------------LD-----TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLL  494 (565)
Q Consensus       437 ----------------L~-----~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-~s~~~k~~A~~lL  494 (565)
                                      |.     ..++.++..-+.+|..||....+ ++.+..-|+.|.|-.+-.. .++..++..-.+.
T Consensus       232 e~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G-Re~lR~kgvYpilRElhk~e~ded~~~ace~vv  310 (353)
T KOG2973|consen  232 ELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG-REVLRSKGVYPILRELHKWEEDEDIREACEQVV  310 (353)
T ss_pred             ccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh-HHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence                            22     13578888999999999986654 7778888999988887666 4667777777777


Q ss_pred             HHHHh
Q 008437          495 MLFRE  499 (565)
Q Consensus       495 ~~L~~  499 (565)
                      .+|-+
T Consensus       311 q~Lv~  315 (353)
T KOG2973|consen  311 QMLVR  315 (353)
T ss_pred             HHHHh
Confidence            77664

>smart00184 RING Ring finger

Probab=98.17  E-value=1.6e-06  Score=59.75  Aligned_cols=39  Identities=49%  Similarity=1.107  Sum_probs=36.1

Q ss_pred             ccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCC
Q 008437           75 CPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKT  113 (565)
Q Consensus        75 CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t  113 (565)
                      ||||++...+|++++|||.|+..||..|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998667789976

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.15  E-value=1.6e-05  Score=70.34  Aligned_cols=129  Identities=12%  Similarity=0.062  Sum_probs=104.6

Q ss_pred             chHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHH
Q 008437          306 VIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNL  382 (565)
Q Consensus       306 ~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~i  382 (565)
                      .+..||.=....   +.++...+-|.|.+.++.|-..+.+..+++..|.-|.+. +....+.++..|+|||.+..|+..|
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~~I   95 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAKFI   95 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHHHH
Confidence            355555544433   456778899999999999999999999999999999998 8999999999999999999999999


Q ss_pred             HHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHH
Q 008437          383 LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATV  436 (565)
Q Consensus       383 v~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~l  436 (565)
                      ++++++|.++..+.+....+.-.++..|..|+... ..|..+.. +.++..+.+.
T Consensus        96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~-p~Vv~~v~r~  149 (173)
T KOG4646|consen   96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS-PAVVRTVQRW  149 (173)
T ss_pred             HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc-HHHHHHHHHH
Confidence            99999999999887888888889999999998854 34555554 2444443333

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=2.2e-06  Score=84.57  Aligned_cols=56  Identities=21%  Similarity=0.523  Sum_probs=48.5

Q ss_pred             CCCCC-CcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 008437           66 MPLPP-EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL  122 (565)
Q Consensus        66 ~~~~p-~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l  122 (565)
                      .+.+| ..+.|-||++-+.||--++|||.||=.||..|..+ ..-||.|++.+.+..+
T Consensus       232 ~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  232 LSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV  288 (293)
T ss_pred             CccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence            44455 56999999999999999999999999999999987 5569999998877654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=98.09  E-value=4.5e-06  Score=86.11  Aligned_cols=52  Identities=27%  Similarity=0.445  Sum_probs=47.8

Q ss_pred             ccccccccccCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437           73 LRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN  125 (565)
Q Consensus        73 f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn  125 (565)
                      +.|.|++++-++||+.+ +||.|||+.|++++.+ +.+||+|+++|+.++|+|-
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~I   53 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEI   53 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeec
Confidence            57999999999999987 9999999999999997 6789999999999888773

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.6e-06  Score=79.51  Aligned_cols=53  Identities=25%  Similarity=0.559  Sum_probs=44.2

Q ss_pred             CcccccccccccCCc--eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 008437           71 EELRCPISLQLMYDP--VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP  124 (565)
Q Consensus        71 ~~f~CpI~~~~m~dP--V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p  124 (565)
                      .-|.||||++-+..=  |.+.|||.||+.||...+.. ...||.|++.+++.++.+
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r  184 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR  184 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence            349999999887664  45789999999999999986 457999999888777654

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.05  E-value=5.7e-06  Score=83.60  Aligned_cols=63  Identities=19%  Similarity=0.395  Sum_probs=47.3

Q ss_pred             Cccccccccc-ccCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC----CcccHHHHHHHH
Q 008437           71 EELRCPISLQ-LMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC----LTPNYCVKGLIA  133 (565)
Q Consensus        71 ~~f~CpI~~~-~m~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~----l~pn~~l~~~i~  133 (565)
                      ++..||+|+. ....|=    +.+|||+||++||..+|..|...||.|+.++....    +.++..+.+.|.
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~   73 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVD   73 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHH
Confidence            4678999996 344552    23699999999999999888889999999987755    455555544443

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.01  E-value=6.3e-06  Score=80.95  Aligned_cols=67  Identities=25%  Similarity=0.412  Sum_probs=58.5

Q ss_pred             ccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCC-CCCCCCCcccHHHHHHHHHHHHHc
Q 008437           73 LRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQ-KLPHLCLTPNYCVKGLIASWCEMN  139 (565)
Q Consensus        73 f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~-~l~~~~l~pn~~l~~~i~~~~~~~  139 (565)
                      +.||+|+.|+++||-+ +|||+||.+||+..|.+....||.|.. .+-.+.|.|++..+..|+.+...+
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq  343 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ  343 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence            9999999999999966 799999999999999888899999954 344567999999999999987743

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.98  E-value=0.00022  Score=79.03  Aligned_cols=137  Identities=19%  Similarity=0.170  Sum_probs=62.2

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh
Q 008437          345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN  424 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~  424 (565)
                      .++.+..+|++. ++.+.-.|+.++..+.....     .-..+++.|+.++.+.+..++..++..|..++...  ...+.
T Consensus       232 ~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~  303 (526)
T PF01602_consen  232 IIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF  303 (526)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG
T ss_pred             HHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh
Confidence            334444444433 34444444444444433222     22345555555555555556666666666665533  22222


Q ss_pred             cCCCCHHHHHHHhh-cCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhh-hcCChhHHHHHHHHHHHHHhh
Q 008437          425 STPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS-VNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       425 ~~~g~v~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~-~~~s~~~k~~A~~lL~~L~~~  500 (565)
                       +   ....+..+. +.+..++..++.+|..++...  +...     +++.|...+ ..++...++.+...+..+...
T Consensus       304 -~---~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~--n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~  370 (526)
T PF01602_consen  304 -N---QSLILFFLLYDDDPSIRKKALDLLYKLANES--NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEK  370 (526)
T ss_dssp             -T---HHHHHHHHHCSSSHHHHHHHHHHHHHH--HH--HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred             -h---hhhhhheecCCCChhHHHHHHHHHhhccccc--chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence             1   222233333 455566666666666666422  2222     344555444 333555666666655555533

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.96  E-value=0.00034  Score=77.50  Aligned_cols=248  Identities=14%  Similarity=0.130  Sum_probs=154.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .++.+...|.+. ++.+|.+|+..+..+.+.+++.   +... .++.|.++|.+    .++.++..|+.+|..+ ..+++
T Consensus       115 l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d----~~~~V~~~a~~~l~~i-~~~~~  184 (526)
T PF01602_consen  115 LIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSD----KDPSVVSAALSLLSEI-KCNDD  184 (526)
T ss_dssp             HHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTH----SSHHHHHHHHHHHHHH-HCTHH
T ss_pred             HHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccC----CcchhHHHHHHHHHHH-ccCcc
Confidence            345566777776 8999999999999998776542   2223 68899999976    6789999999988888 22222


Q ss_pred             hhHH--------HH---hcC---chHHHHHHhcC---Cc--HH--HH-------------------HHHHHHHhcCCCCC
Q 008437          297 NKEL--------ML---AAG---VIPLLEKMISN---SN--SH--GA-------------------ATALYLNLSFLDDA  336 (565)
Q Consensus       297 nk~~--------i~---~~G---~i~~Lv~lL~s---~~--~~--~~-------------------A~aaL~nLs~~~~~  336 (565)
                      .-..        +.   ...   +.-.++++|..   ..  ..  ..                   ++.++..+...   
T Consensus       185 ~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---  261 (526)
T PF01602_consen  185 SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---  261 (526)
T ss_dssp             HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---
T ss_pred             hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---
Confidence            2000        00   000   11122222221   00  01  00                   11112212111   


Q ss_pred             chhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhc
Q 008437          337 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAA  415 (565)
Q Consensus       337 k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~  415 (565)
                      ..  ....+++.|+++|.+. ++..+-.++.+|..++...   ...+.  .....+. +..+.+..++..++.+|..++.
T Consensus       262 ~~--~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~---~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  262 PE--LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSN---PPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             HH--HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHC---HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred             hH--HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhccc---chhhh--hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence            11  1235789999999977 8889999999999998765   33444  2233333 4457889999999999999997


Q ss_pred             CcccHHHHhcCCCCHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHH
Q 008437          416 SAAGKEEMNSTPGLVSGLATVL-DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL  494 (565)
Q Consensus       416 ~~~~r~~i~~~~g~v~~Lv~lL-~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL  494 (565)
                       +.+...+      +..|.+.+ ...++..++.++..+..+|...+...     +-.+..|+.++..+.+.+...+...+
T Consensus       334 -~~n~~~I------l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~-----~~~v~~l~~ll~~~~~~~~~~~~~~i  401 (526)
T PF01602_consen  334 -ESNVKEI------LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA-----EWYVDTLLKLLEISGDYVSNEIINVI  401 (526)
T ss_dssp             -HHHHHHH------HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH-----HHHHHHHHHHHHCTGGGCHCHHHHHH
T ss_pred             -ccchhhH------HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH-----HHHHHHHHHhhhhccccccchHHHHH
Confidence             5555554      45688888 44588899999999999886443211     12478888988876666665555555


Q ss_pred             HHH
Q 008437          495 MLF  497 (565)
Q Consensus       495 ~~L  497 (565)
                      ..+
T Consensus       402 ~~l  404 (526)
T PF01602_consen  402 RDL  404 (526)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PHA02926 zinc finger-like protein; Provisional

Probab=97.92  E-value=6.5e-06  Score=78.35  Aligned_cols=56  Identities=18%  Similarity=0.462  Sum_probs=43.8

Q ss_pred             CCCCcccccccccccCC---------ceecCCCcccchHHHHHHHhcC-----CCCCCCCCCCCCCCCCccc
Q 008437           68 LPPEELRCPISLQLMYD---------PVIIASGQTYERICIEKWLSDG-----HSTCPKTQQKLPHLCLTPN  125 (565)
Q Consensus        68 ~~p~~f~CpI~~~~m~d---------PV~~~~g~ty~r~~I~~~~~~~-----~~~cP~t~~~l~~~~l~pn  125 (565)
                      ...++..|+||++...+         ++..+|||+||..||.+|....     ..+||.|++.+.  .++|+
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS  235 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS  235 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence            45667899999988654         4677899999999999999742     356999998875  34554

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.91  E-value=9.7e-05  Score=80.43  Aligned_cols=128  Identities=20%  Similarity=0.134  Sum_probs=103.4

Q ss_pred             hccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc
Q 008437          340 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA  418 (565)
Q Consensus       340 I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~  418 (565)
                      .....++.+||++|..+ +..++..++++|+||.. ...-|..+++.|+|+.|..++.+.+..++..++++|+++....+
T Consensus       415 ~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d  493 (678)
T KOG1293|consen  415 LKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD  493 (678)
T ss_pred             CccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch
Confidence            44467899999999888 88999999999999996 55679999999999999998888899999999999999998665


Q ss_pred             cHHHHh-cCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHh
Q 008437          419 GKEEMN-STPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ  468 (565)
Q Consensus       419 ~r~~i~-~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~  468 (565)
                      ...... ...=.-..|+.+..+.+..++|.|...|.||..+..+....+++
T Consensus       494 e~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~  544 (678)
T KOG1293|consen  494 EEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE  544 (678)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence            444332 11123455677778889999999999999999886554444443

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.90  E-value=0.0019  Score=67.37  Aligned_cols=274  Identities=16%  Similarity=0.138  Sum_probs=181.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-------cCCHHHHHHHhcccccCCCHHHHHHHHHHHH
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-------NGFVVALLRFLESAVCERNSYAQEIGAMALF  288 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-------~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~  288 (565)
                      +.+..++..|+.....+...-++..+..+..++. .|..+..       .-..+..+.+|..    .+.-+.+.+..+|.
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~-sr~~lf~~~a~~~k~~~~~~fl~ll~r----~d~~iv~~~~~Ils  139 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDR-SRVDLFHDYAHKLKRTEWLSFLNLLNR----QDTFIVEMSFRILS  139 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCc-hHHHHHHHHHHhhhccchHHHHHHHhc----CChHHHHHHHHHHH
Confidence            4556677777665445556666666766665543 3333221       2235667788866    67777887888888


Q ss_pred             HhhccCchhhHHHHhcC-chHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHh-cCCCCHHHHH
Q 008437          289 NLAVNNNRNKELMLAAG-VIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC-KGKTEHQCKL  363 (565)
Q Consensus       289 nLa~~~~~nk~~i~~~G-~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL-~~~~~~~~~~  363 (565)
                      .++..... +....+-. ....|...|.++   +....|+.+|..+...+++|..+....++..|+..| .+..+.+.+=
T Consensus       140 ~la~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQY  218 (442)
T KOG2759|consen  140 KLACFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQY  218 (442)
T ss_pred             HHHHhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHH
Confidence            87754221 11111111 134455556553   345668889999999999999999988899999998 3334788999


Q ss_pred             HHHHHHHHhccCCCChHHHHHcCchHHHhhccCC-CChHHHHHHHHHHHHHhcCcc-------cHHHHhcCCCCHHHHHH
Q 008437          364 DALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAA-------GKEEMNSTPGLVSGLAT  435 (565)
Q Consensus       364 ~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~-~~~~~~e~al~~L~nLa~~~~-------~r~~i~~~~g~v~~Lv~  435 (565)
                      ..+-+++-|+.++.....+...+.|+.|++++++ ....+..-+++++.|+.....       ....|+..  .++.-++
T Consensus       219 qsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~--~v~k~l~  296 (442)
T KOG2759|consen  219 QSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC--KVLKTLQ  296 (442)
T ss_pred             HHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc--CchHHHH
Confidence            9999999999999888888888999999998765 356778889999999998763       33344442  3333333


Q ss_pred             Hhhc---CCHHH---------------------------------------------HHH----------HHHHHHHh--
Q 008437          436 VLDT---GELIE---------------------------------------------QEQ----------AVSCLFLL--  455 (565)
Q Consensus       436 lL~~---~s~~~---------------------------------------------~e~----------Av~~L~~L--  455 (565)
                      .|..   +++..                                             +|+          -+.+|..|  
T Consensus       297 ~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe  376 (442)
T KOG2759|consen  297 SLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLE  376 (442)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHh
Confidence            3322   11100                                             111          12233222  


Q ss_pred             ------------------hcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437          456 ------------------CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF  497 (565)
Q Consensus       456 ------------------c~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L  497 (565)
                                        -+..++-+..+.+-|+=..++.|+...++++|-.|..+++.|
T Consensus       377 ~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l  436 (442)
T KOG2759|consen  377 TSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL  436 (442)
T ss_pred             cCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence                              223344466677789999999999999999999999888775

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=2.2e-06  Score=86.48  Aligned_cols=69  Identities=25%  Similarity=0.373  Sum_probs=57.4

Q ss_pred             CCCCCcccccccccccCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHH
Q 008437           67 PLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPH-LCLTPNYCVKGLIASW  135 (565)
Q Consensus        67 ~~~p~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~-~~l~pn~~l~~~i~~~  135 (565)
                      ..+-.+|.||||+.+++--+++. |+|.||+.||.+-+..|+..||.|++.+.. ..|.++...-.+|.+.
T Consensus        38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i  108 (381)
T KOG0311|consen   38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI  108 (381)
T ss_pred             HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence            34556899999999999999875 999999999999999999999999998754 5677666666666554

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.87  E-value=0.0002  Score=77.98  Aligned_cols=203  Identities=14%  Similarity=0.061  Sum_probs=140.2

Q ss_pred             hhhHHHHhcCchHHHHHHhcCCc------HHHHHHHHHHHhc--CCC-----CCchhhccCCchHHHHHHhcCCCCHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSN------SHGAATALYLNLS--FLD-----DAKPIIGSSHAVPFLVELCKGKTEHQCK  362 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~------~~~~A~aaL~nLs--~~~-----~~k~~I~~~g~i~~Lv~lL~~~~~~~~~  362 (565)
                      .+.....+...++.++++|..+.      .+..+..+=.++.  ...     +++..+-+.-....+..+.... +....
T Consensus       316 klq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~  394 (678)
T KOG1293|consen  316 KLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFV  394 (678)
T ss_pred             hhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHH
Confidence            34555556678888888886432      1111222111121  111     1223333333334444444455 67788


Q ss_pred             HHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcC
Q 008437          363 LDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTG  440 (565)
Q Consensus       363 ~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~  440 (565)
                      .+|+..+.+++..- .-+.-+-+..++.+|++++.+++..+...++++|.||.. ...-+..+++. |+|..|.+++.+-
T Consensus       395 aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~-ngId~l~s~~~~~  473 (678)
T KOG1293|consen  395 AAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRN-NGIDILESMLTDP  473 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHc-CcHHHHHHHhcCC
Confidence            88888888876421 112224456789999998888888999999999999998 46678888886 9999999999999


Q ss_pred             CHHHHHHHHHHHHHhhcCChHHHHHHHhCCcH-HHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          441 ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI-PALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       441 s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v-~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      ++..+..++++|+++..++.+..+...-..+- ..|+.+..+.+..+++.+-.+||+|.-.
T Consensus       474 ~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  474 DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            99999999999999998876555444444433 3467899999999999999999998744

>PF05536 Neurochondrin: Neurochondrin

Probab=97.85  E-value=0.00023  Score=78.99  Aligned_cols=152  Identities=16%  Similarity=0.163  Sum_probs=112.2

Q ss_pred             hHHHHHHhcCCcHHHH--HHHHHHHhcCCCC----CchhhccCCchHHHHHHhcCCC------CHHHHHHHHHHHHHhcc
Q 008437          307 IPLLEKMISNSNSHGA--ATALYLNLSFLDD----AKPIIGSSHAVPFLVELCKGKT------EHQCKLDALHALYNLST  374 (565)
Q Consensus       307 i~~Lv~lL~s~~~~~~--A~aaL~nLs~~~~----~k~~I~~~g~i~~Lv~lL~~~~------~~~~~~~Al~aL~nLs~  374 (565)
                      +...+.+|++.+..+.  +...+..+...++    .+..|.++=+..+|-+||+++.      ....+.-|+.+|..+|.
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            5556677776643333  3334444444332    2334666656799999999841      34677889999999999


Q ss_pred             CCCChHHHHHcCchHHHhhccCCCC-hHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437          375 IPSNIPNLLSAGIISGLQSLAVPGD-PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF  453 (565)
Q Consensus       375 ~~~nk~~iv~~G~v~~Lv~Ll~~~~-~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~  453 (565)
                      .++....=--.+-||.|++++...+ ..+...|+.+|..++.+++|+..+++. |+|+.|++++.+ .+...|.|+.+|.
T Consensus        87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~-g~v~~L~ei~~~-~~~~~E~Al~lL~  164 (543)
T PF05536_consen   87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLES-GAVPALCEIIPN-QSFQMEIALNLLL  164 (543)
T ss_pred             ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhc-CCHHHHHHHHHh-CcchHHHHHHHHH
Confidence            7764432222358999999655444 489999999999999999999999997 999999999987 7778999999999


Q ss_pred             HhhcCCh
Q 008437          454 LLCNGNE  460 (565)
Q Consensus       454 ~Lc~~~~  460 (565)
                      +++....
T Consensus       165 ~Lls~~~  171 (543)
T PF05536_consen  165 NLLSRLG  171 (543)
T ss_pred             HHHHhcc
Confidence            9987544

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.002  Score=74.47  Aligned_cols=155  Identities=14%  Similarity=0.142  Sum_probs=109.3

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH---cCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHH
Q 008437          345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS---AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE  421 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~---~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~  421 (565)
                      .++.+-.+|.+. +..-+++|+.||..++..   +...+.   ..+++.++..+.++++.++..|+.++..++.+=.--.
T Consensus       349 ~~~~l~~~l~S~-~w~~R~AaL~Als~i~EG---c~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i  424 (1075)
T KOG2171|consen  349 LFEALEAMLQST-EWKERHAALLALSVIAEG---CSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI  424 (1075)
T ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence            344555667788 888999999999888642   222222   2466666667888999999999999999998422111


Q ss_pred             HHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHH-HHHHHhCCcHH-HHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          422 EMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKC-CQMVLQEGVIP-ALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       422 ~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~-~~~v~~~G~v~-~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      .-.-+.-.++.|+..+++ .+++++.+|+.+|.++.....+. ..-.+ .+++. .|..|..++++.+++.|+..|-...
T Consensus       425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA  503 (1075)
T KOG2171|consen  425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVA  503 (1075)
T ss_pred             HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            112233677889998886 68899999999999987655421 11111 24555 4556888899999999999999888


Q ss_pred             hhcccC
Q 008437          499 EQRQRD  504 (565)
Q Consensus       499 ~~r~~~  504 (565)
                      ..-+..
T Consensus       504 ~AA~~~  509 (1075)
T KOG2171|consen  504 DAAQEK  509 (1075)
T ss_pred             HHHhhh
Confidence            776555

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.0004  Score=77.02  Aligned_cols=212  Identities=17%  Similarity=0.117  Sum_probs=164.5

Q ss_pred             HHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC----cHHHHHHHHHHHhcCCCC-
Q 008437          261 VVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS----NSHGAATALYLNLSFLDD-  335 (565)
Q Consensus       261 i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~----~~~~~A~aaL~nLs~~~~-  335 (565)
                      |+.|+.-+.++   .=.+-++.|+..|..++.   ..|..+. +-|+++|+..|...    +....+.-+++++..+++ 
T Consensus        24 I~kLcDRvess---TL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   24 IEKLCDRVESS---TLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             HHHHHHHHhhc---cchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            44455444442   335668889999999874   4666654 45688999999764    234568888888877653 


Q ss_pred             ------Cc----------hh-hccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC--ChHHHHH-cCchHHHhhcc
Q 008437          336 ------AK----------PI-IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS--NIPNLLS-AGIISGLQSLA  395 (565)
Q Consensus       336 ------~k----------~~-I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~--nk~~iv~-~G~v~~Lv~Ll  395 (565)
                            .+          .+ |-..+.|..|+..+... |..++..|+..|.+|-.+..  .+..+.. --+|..|+.++
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence                  22          12 22357889999999988 88999999999999876554  4555544 57899999999


Q ss_pred             CCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcC----CHHHHHHHHHHHHHhhcCChHHHHHHHhCCc
Q 008437          396 VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG----ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV  471 (565)
Q Consensus       396 ~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~----s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~  471 (565)
                      .+....++..++-.|..|.........++.-+.+...|..++...    ..-+-+.|+..|.+|-+++..+...+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            888888999999999999999988999888778999999999862    3468999999999999998888899999999


Q ss_pred             HHHHHHhhh
Q 008437          472 IPALVSISV  480 (565)
Q Consensus       472 v~~Lv~L~~  480 (565)
                      ||.|..|+.
T Consensus       256 i~rL~klL~  264 (970)
T KOG0946|consen  256 IPRLLKLLS  264 (970)
T ss_pred             HHHHHhhcC
Confidence            999986544

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.79  E-value=1.8e-05  Score=57.10  Aligned_cols=41  Identities=20%  Similarity=0.525  Sum_probs=35.1

Q ss_pred             ccccccccc---CCceecCCCcccchHHHHHHHhcCCCCCCCCCC
Q 008437           74 RCPISLQLM---YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQ  115 (565)
Q Consensus        74 ~CpI~~~~m---~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~  115 (565)
                      .||||.+.+   ..|++++|||+||..||.++. .....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            389999888   457789999999999999999 45678999974

>PF05536 Neurochondrin: Neurochondrin

Probab=97.75  E-value=0.0012  Score=73.48  Aligned_cols=235  Identities=15%  Similarity=0.171  Sum_probs=152.0

Q ss_pred             CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch---hhHHHHhcCchHHHHHHhcCCc------H---HHHHHHHH
Q 008437          260 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR---NKELMLAAGVIPLLEKMISNSN------S---HGAATALY  327 (565)
Q Consensus       260 ~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~---nk~~i~~~G~i~~Lv~lL~s~~------~---~~~A~aaL  327 (565)
                      .++..+.+|+.    .+.+-+-.|+..+.++...++.   .++.+.++=+...|-++|+++.      .   ...|+++|
T Consensus         6 ~l~~c~~lL~~----~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL   81 (543)
T PF05536_consen    6 SLEKCLSLLKS----ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL   81 (543)
T ss_pred             HHHHHHHHhcc----CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence            35566778877    3444456667777777654442   2445777766899999998732      1   23488888


Q ss_pred             HHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHH
Q 008437          328 LNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSL  407 (565)
Q Consensus       328 ~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al  407 (565)
                      ..++..++....-.-.+-||.|++++.+..+......|+.+|..++..++.+..+++.|+|+.|.+++.+ .....+.|+
T Consensus        82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   82 AAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             HHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence            8888866543221113689999999988834489999999999999999999999999999999996554 455679999


Q ss_pred             HHHHHHhcCcccHHHHhcCCC----CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHH-HHHHHhC----CcHHHHHHh
Q 008437          408 AVLLNLAASAAGKEEMNSTPG----LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKC-CQMVLQE----GVIPALVSI  478 (565)
Q Consensus       408 ~~L~nLa~~~~~r~~i~~~~g----~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~-~~~v~~~----G~v~~Lv~L  478 (565)
                      .+|.+++.... ...+-++..    .+..|.+.+.......+=..+..|..+-...+.. .......    .+...|..+
T Consensus       161 ~lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i  239 (543)
T PF05536_consen  161 NLLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI  239 (543)
T ss_pred             HHHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence            99999988543 222222222    3344444444444455556677776665544210 1111222    233444555


Q ss_pred             hhc-CChhHHHHHHHHHHHHHhh
Q 008437          479 SVN-GSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       479 ~~~-~s~~~k~~A~~lL~~L~~~  500 (565)
                      +.+ -++..|..|..+...|-+.
T Consensus       240 L~sr~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  240 LQSRLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHH
Confidence            554 4677777777777666654

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.73  E-value=0.0079  Score=63.73  Aligned_cols=272  Identities=15%  Similarity=0.123  Sum_probs=188.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhH
Q 008437          220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE  299 (565)
Q Consensus       220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~  299 (565)
                      .+..++-+. +.+++..+.+.+|.+.. +++.-..+.+.+.--.++.-|....  .+..-+++|+..++.+..- .....
T Consensus        29 ~i~~~lL~~-~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~--~~~~ER~QALkliR~~l~~-~~~~~  103 (371)
T PF14664_consen   29 RIQCMLLSD-SKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDN--KNDVEREQALKLIRAFLEI-KKGPK  103 (371)
T ss_pred             HHHHHHCCC-cHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccC--CChHHHHHHHHHHHHHHHh-cCCcc
Confidence            333355555 68999999999999985 4556667777776666777776532  3455678899888887532 11222


Q ss_pred             HHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC
Q 008437          300 LMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS  377 (565)
Q Consensus       300 ~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~  377 (565)
                       -+..|++..|+.+....+.  +..|.++|..|+..+  -..+...|++..|++.+-++ ..+..+..+.++..+-..+.
T Consensus       104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDG-SFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCcc
Confidence             2355789999999987654  456888998887653  34566789999999999887 66688889999999999888


Q ss_pred             ChHHHHHcCchHHHhh-ccCC------CCh--HHHHHHHHHHHHHhcCcccHHHHhcCC-CCHHHHHHHhhcCCHHHHHH
Q 008437          378 NIPNLLSAGIISGLQS-LAVP------GDP--MWTEKSLAVLLNLAASAAGKEEMNSTP-GLVSGLATVLDTGELIEQEQ  447 (565)
Q Consensus       378 nk~~iv~~G~v~~Lv~-Ll~~------~~~--~~~e~al~~L~nLa~~~~~r~~i~~~~-g~v~~Lv~lL~~~s~~~~e~  447 (565)
                      .|..+...--++.++. +.+.      ++.  .....+..++..+-.+..|--.+...+ .++..|+..|...++.+++.
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            8887766444555555 3322      122  233455555555556566666555443 68889999998888888888


Q ss_pred             HHHHHHHhhcCC-----------------hH-----------------------------------HHHHHHhCCcHHHH
Q 008437          448 AVSCLFLLCNGN-----------------EK-----------------------------------CCQMVLQEGVIPAL  475 (565)
Q Consensus       448 Av~~L~~Lc~~~-----------------~~-----------------------------------~~~~v~~~G~v~~L  475 (565)
                      .+.+|..+-+-.                 ..                                   ....+.+.|.++.|
T Consensus       260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L  339 (371)
T PF14664_consen  260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL  339 (371)
T ss_pred             HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence            888887653210                 00                                   01234577999999


Q ss_pred             HHhhhcC-ChhHHHHHHHHHHHHHhh
Q 008437          476 VSISVNG-STRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       476 v~L~~~~-s~~~k~~A~~lL~~L~~~  500 (565)
                      +.+..+. ++....||.-+|..+-..
T Consensus       340 ~~li~~~~d~~l~~KAtlLL~elL~l  365 (371)
T PF14664_consen  340 VELIESSEDSSLSRKATLLLGELLHL  365 (371)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHH
Confidence            9988887 889999999999875433

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=2.4e-05  Score=82.45  Aligned_cols=72  Identities=22%  Similarity=0.440  Sum_probs=60.0

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC-----CCCcccHHHHHHHHHHHHH
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH-----LCLTPNYCVKGLIASWCEM  138 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~-----~~l~pn~~l~~~i~~~~~~  138 (565)
                      ...++.+|.|-||..++.+||+++|||+||+.||++.++. ...||.|+.++..     ....+|+.++.+|..|+..
T Consensus        78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            4456899999999999999999999999999999998874 6779999988764     1234577788888888664

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.71  E-value=2.3e-05  Score=83.52  Aligned_cols=69  Identities=26%  Similarity=0.454  Sum_probs=58.1

Q ss_pred             CCCcccccccccccCCcee-cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHHHHH
Q 008437           69 PPEELRCPISLQLMYDPVI-IASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP-NYCVKGLIASWCEM  138 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~-~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p-n~~l~~~i~~~~~~  138 (565)
                      +.+++.||+|..++.||+. +.|||.||+.||..|+.. +..||.|.+.+......| ...+++++..|-..
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~   88 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPIR   88 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcccc
Confidence            5678999999999999998 499999999999999998 889999988877666555 45677788777443

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=3.1e-05  Score=75.55  Aligned_cols=55  Identities=20%  Similarity=0.439  Sum_probs=47.3

Q ss_pred             CCCCC-CcccccccccccCCceecCCCcccchHHHHH-HHhcCCCCCCCCCCCCCCC
Q 008437           66 MPLPP-EELRCPISLQLMYDPVIIASGQTYERICIEK-WLSDGHSTCPKTQQKLPHL  120 (565)
Q Consensus        66 ~~~~p-~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~-~~~~~~~~cP~t~~~l~~~  120 (565)
                      .+.+| .+|.|+||.+.|.+|+-++|||.||=.||-. |-.+....||.|++...+.
T Consensus       208 ~pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk  264 (271)
T COG5574         208 LPFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK  264 (271)
T ss_pred             CCcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence            45566 6899999999999999999999999999999 8777667799998865443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.61  E-value=5.1e-05  Score=53.67  Aligned_cols=40  Identities=38%  Similarity=0.375  Sum_probs=37.2

Q ss_pred             CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437          376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA  415 (565)
Q Consensus       376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~  415 (565)
                      ++++..++++|+|+.|++++.+.+..+++.|+++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            4678899999999999999999999999999999999984

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.58  E-value=0.0061  Score=64.58  Aligned_cols=253  Identities=14%  Similarity=0.078  Sum_probs=170.2

Q ss_pred             HHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC--
Q 008437          240 QIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS--  317 (565)
Q Consensus       240 ~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~--  317 (565)
                      .|-.+.+..++.+..+.-.-..+.+..++-+    ++.+++-.|.++++.+. .+.+.-..+.+.+.--.++..|...  
T Consensus         6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~----~~~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~~~   80 (371)
T PF14664_consen    6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLS----DSKEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRDNK   80 (371)
T ss_pred             HHHHHHHhCchhhhhhhHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhcccCC
Confidence            3444445555555555544455566554444    35788899999999986 4677778888888777788888654  


Q ss_pred             --cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhcc
Q 008437          318 --NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA  395 (565)
Q Consensus       318 --~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll  395 (565)
                        ..+++|...+..+.........+ ..|.+..||.+..+. +...+..|+.+|+.|+..+  -..++++|++..|++.+
T Consensus        81 ~~~ER~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~-~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l  156 (371)
T PF14664_consen   81 NDVEREQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHE-DDRLRRICLETLCELALLN--PELVAECGGIRVLLRAL  156 (371)
T ss_pred             ChHHHHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHH
Confidence              24667888887765443332222 357889999999987 7889999999999998743  34567899999999944


Q ss_pred             CCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcC-------CH--HHHHHHHHHHHHhhcCChHHHHHH
Q 008437          396 VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG-------EL--IEQEQAVSCLFLLCNGNEKCCQMV  466 (565)
Q Consensus       396 ~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~-------s~--~~~e~Av~~L~~Lc~~~~~~~~~v  466 (565)
                      -++...+.+.++.++..+-.++..|.-+... --+..|+.-+...       +.  .--..+..++..+-+...+..-..
T Consensus       157 ~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~-~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~  235 (371)
T PF14664_consen  157 IDGSFSISESLLDTLLYLLDSPRTRKYLRPG-FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS  235 (371)
T ss_pred             HhccHhHHHHHHHHHHHHhCCcchhhhhcCC-ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence            4465568899999999999999999877653 3355555444322       11  123344444444444443332222


Q ss_pred             HhC-CcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcc
Q 008437          467 LQE-GVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ  502 (565)
Q Consensus       467 ~~~-G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~  502 (565)
                      ... .++..|+..+.-.++++|+....+|--+-+.++
T Consensus       236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~  272 (371)
T PF14664_consen  236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKP  272 (371)
T ss_pred             cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence            232 578889988888888888888777777554433

>PTZ00429 beta-adaptin; Provisional

Probab=97.55  E-value=0.02  Score=65.87  Aligned_cols=257  Identities=12%  Similarity=0.036  Sum_probs=163.2

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      ..+..+++.+.+. +.+.|.-.--.|.++++.+++.- .+    ++..|.+=|.+    .++.++-.|+++|.++-.  +
T Consensus        68 ~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pela-lL----aINtl~KDl~d----~Np~IRaLALRtLs~Ir~--~  135 (746)
T PTZ00429         68 YLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKA-LL----AVNTFLQDTTN----SSPVVRALAVRTMMCIRV--S  135 (746)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHH-HH----HHHHHHHHcCC----CCHHHHHHHHHHHHcCCc--H
Confidence            4667778877776 88888777777777776554422 11    14445554444    789999999888887742  2


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS  373 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs  373 (565)
                      ..-..     .++.+.+.|...+.  +..|+-++..+-..  ....+...|.++.|.++|.+. ++.+..+|+.+|+.+.
T Consensus       136 ~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~--~pelv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~  207 (746)
T PTZ00429        136 SVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHD--DMQLFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVN  207 (746)
T ss_pred             HHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--CcccccccchHHHHHHHhcCC-CccHHHHHHHHHHHHH
Confidence            22222     34556666765543  56666666666432  223455568999999999888 9999999999999998


Q ss_pred             cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437          374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF  453 (565)
Q Consensus       374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~  453 (565)
                      ....... -...+.+..|+..+.+.++-.+-..+.+|....  +.......   ..+..+...|.+.++.+.-.|+.++.
T Consensus       208 ~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~~---~il~~l~~~Lq~~N~AVVl~Aik~il  281 (746)
T PTZ00429        208 DYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESAE---TLLTRVLPRMSHQNPAVVMGAIKVVA  281 (746)
T ss_pred             HhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            6544332 223456677777666556666666666665432  22222221   35667777788888999999999998


Q ss_pred             HhhcCC-hHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          454 LLCNGN-EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       454 ~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      .+.... ......+. ..+.+.|+.|+ ++++.+|--+..-|..+...
T Consensus       282 ~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~  327 (746)
T PTZ00429        282 NLASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVI  327 (746)
T ss_pred             HhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHH
Confidence            887643 22111111 12335566664 56677877777666666543

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.55  E-value=4.1e-05  Score=77.07  Aligned_cols=66  Identities=15%  Similarity=0.358  Sum_probs=54.4

Q ss_pred             CCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHH
Q 008437           69 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHL----CLTPNYCVKGLIASW  135 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~----~l~pn~~l~~~i~~~  135 (565)
                      +-....|++|..+|.|+-|+ .|=|||||.||-++|.. ..+||.|+-.+...    .+.++.+|+.++...
T Consensus        12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            34578899999999999976 49999999999999998 78999998666443    467788888877553

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=5.2e-05  Score=80.44  Aligned_cols=70  Identities=24%  Similarity=0.422  Sum_probs=57.2

Q ss_pred             cccccccccccCCceecCCCcccchHHHHHHHhc----CCCCCCCCCCCCCCCCCccc----HHHHHHHHHHHHHcCC
Q 008437           72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSD----GHSTCPKTQQKLPHLCLTPN----YCVKGLIASWCEMNGV  141 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~----~~~~cP~t~~~l~~~~l~pn----~~l~~~i~~~~~~~~~  141 (565)
                      +..||||++-..=|+.+.|||.||=.||.++|..    +...||.|+..+...+|.|-    ..-+..++..+..||+
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~  263 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI  263 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence            7899999999999999999999999999998874    35679999988887666554    3345557777888873

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.51  E-value=0.0001  Score=52.16  Aligned_cols=40  Identities=33%  Similarity=0.282  Sum_probs=36.8

Q ss_pred             CccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437          248 DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA  291 (565)
Q Consensus       248 ~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa  291 (565)
                      +++++..+++.|+++.|+.+|.+    .+..+++.|+++|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~----~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKS----PDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTS----SSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcC----CCHHHHHHHHHHHHHHh
Confidence            35788899999999999999997    78999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.50  E-value=9.4e-05  Score=59.48  Aligned_cols=39  Identities=33%  Similarity=0.763  Sum_probs=32.0

Q ss_pred             ccccccccCCc-------------eecCCCcccchHHHHHHHhcCCCCCCCCC
Q 008437           75 CPISLQLMYDP-------------VIIASGQTYERICIEKWLSDGHSTCPKTQ  114 (565)
Q Consensus        75 CpI~~~~m~dP-------------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~  114 (565)
                      |+||++-|.||             +...|||.|-..||++|+.. +.+||.|+
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            99999999554             23479999999999999986 55999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.0023  Score=64.36  Aligned_cols=206  Identities=15%  Similarity=0.162  Sum_probs=138.3

Q ss_pred             HHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHh-cCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhh
Q 008437          262 VALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA-AGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPII  340 (565)
Q Consensus       262 ~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~-~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I  340 (565)
                      ..|+.||.+    .++.++..|+..|.+|+..  ..+..... ...++.|..++......+.|+.+|.|++.....+..+
T Consensus         6 ~elv~ll~~----~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~~~~a~~alVnlsq~~~l~~~l   79 (353)
T KOG2973|consen    6 VELVELLHS----LSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDPAEPAATALVNLSQKEELRKKL   79 (353)
T ss_pred             HHHHHHhcc----CChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcccccHHHHHHHHHHhhHHHHHHH
Confidence            457888877    6789999999999999743  23333322 2468888899877655677999999999998877777


Q ss_pred             ccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH--c----CchHHHhh-ccCCCCh--HHHHHHHHHHH
Q 008437          341 GSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--A----GIISGLQS-LAVPGDP--MWTEKSLAVLL  411 (565)
Q Consensus       341 ~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~--~----G~v~~Lv~-Ll~~~~~--~~~e~al~~L~  411 (565)
                      .+. .+..|+.++-+. .....+.++.+|.||+..++....+..  .    .++..|+. ....+..  .-....+-++.
T Consensus        80 l~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HHH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            665 778888888776 445677899999999998875555432  1    34444444 4433211  22366788999


Q ss_pred             HHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHHHHHHHhC--CcHHHHH
Q 008437          412 NLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQE--GVIPALV  476 (565)
Q Consensus       412 nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~--G~v~~Lv  476 (565)
                      ||+....+|.-+....-++...+.-+.. ++..-+...+++|.|.|.... ....++.+  .+.|.|+
T Consensus       158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~-~h~~lL~e~~~lLp~iL  224 (353)
T KOG2973|consen  158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK-LHEVLLDESINLLPAIL  224 (353)
T ss_pred             HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch-hHHHHhcchHHHHHHHH
Confidence            9999999999887653222222222223 344456778889999888765 34444444  3455543

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=4.8e-05  Score=84.43  Aligned_cols=54  Identities=20%  Similarity=0.399  Sum_probs=49.4

Q ss_pred             CcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 008437           71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP  124 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p  124 (565)
                      .-+.||+|..=.+|-|++-|||-||-.||+.-+...+..||.|+..|...++.|
T Consensus       642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence            347999999999999999999999999999999877899999999998877765

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.0082  Score=68.58  Aligned_cols=241  Identities=13%  Similarity=0.136  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHhccCccchhhhhc----cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHH
Q 008437          235 CNIVEQIRLLLKDDEEARVFTGA----NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLL  310 (565)
Q Consensus       235 ~~Al~~L~~La~~~~~~r~~i~~----~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~L  310 (565)
                      .-++.+|+++.+.+++.-..++.    -|..+.+..+|...   .++.+|..|+..+..+. .+.+.-.-|++.|++..|
T Consensus      1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~---~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR---KHPKLQILALQVILLAT-ANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc---CCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHH
Confidence            35789999999999877666654    46777777777653   56789999998887776 467777888888999999


Q ss_pred             HHHhcCC-cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc----------------
Q 008437          311 EKMISNS-NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS----------------  373 (565)
Q Consensus       311 v~lL~s~-~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs----------------  373 (565)
                      ..+|.+- +.++.+.-+|+.|+...+.-..-.+.|++..+..++-..++++.+..|+..|..|.                
T Consensus      1819 L~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1819 LTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred             HHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence            9998764 55666777777777665443333344544444433322212222222222111111                


Q ss_pred             --------------------------------------------------------------------------------
Q 008437          374 --------------------------------------------------------------------------------  373 (565)
Q Consensus       374 --------------------------------------------------------------------------------  373 (565)
                                                                                                      
T Consensus      1899 LP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1899 LPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred             chHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------c-CCCChHHHHHcCchHHHhhccCC
Q 008437          374 -------------------------------------------------------T-IPSNIPNLLSAGIISGLQSLAVP  397 (565)
Q Consensus       374 -------------------------------------------------------~-~~~nk~~iv~~G~v~~Lv~Ll~~  397 (565)
                                                                             . ++.-...+-..|-+|.++..+..
T Consensus      1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~ 2058 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCL 2058 (2235)
T ss_pred             chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHh
Confidence                                                                   1 11111111123555555553322


Q ss_pred             CChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCcHHHHH
Q 008437          398 GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALV  476 (565)
Q Consensus       398 ~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~v~~Lv  476 (565)
                      .+..+-..|+.+|..|+.+.-...+|... .++..++..|... +..-..|+.+|-.+-... .+....++..|.||.|+
T Consensus      2059 ~n~s~P~SaiRVlH~Lsen~~C~~AMA~l-~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL 2136 (2235)
T KOG1789|consen 2059 QNTSAPRSAIRVLHELSENQFCCDAMAQL-PCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLL 2136 (2235)
T ss_pred             cCCcCcHHHHHHHHHHhhccHHHHHHhcc-ccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHH
Confidence            22333467999999999998888888876 6777788887653 233347888887776544 35667778889999999


Q ss_pred             Hhhhc
Q 008437          477 SISVN  481 (565)
Q Consensus       477 ~L~~~  481 (565)
                      .|+..
T Consensus      2137 ~LLd~ 2141 (2235)
T KOG1789|consen 2137 QLLDS 2141 (2235)
T ss_pred             HHhcc
Confidence            88764

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.048  Score=57.47  Aligned_cols=241  Identities=14%  Similarity=0.109  Sum_probs=170.5

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----cc----chhhhhccCCHHHHHHHhcccccC--CCHHHHHHHH
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-----EE----ARVFTGANGFVVALLRFLESAVCE--RNSYAQEIGA  284 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-----~~----~r~~i~~~G~i~~Lv~lL~s~~~s--~~~~~q~~A~  284 (565)
                      .+++.|+.+|.+. +.++-...+..|..|+..+     .+    ....+++.++++.|++-+..-..+  +......+++
T Consensus       125 n~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L  203 (536)
T KOG2734|consen  125 NAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL  203 (536)
T ss_pred             ccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence            5788999999987 8999999999999998653     11    234567788889998887652111  1223445667


Q ss_pred             HHHHHhhccCchhhHHHHhcCchHHHHHHhcCC---c-HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhc----C
Q 008437          285 MALFNLAVNNNRNKELMLAAGVIPLLEKMISNS---N-SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCK----G  355 (565)
Q Consensus       285 ~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~---~-~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~----~  355 (565)
                      ..+-|+..-.+.....+++.|.+..|..-+...   + ....|..+|.-+-.+ ++++..++.-.+|..|++-|.    .
T Consensus       204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~  283 (536)
T KOG2734|consen  204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH  283 (536)
T ss_pred             HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence            778888766777788888888777766644332   1 234466677665444 568888888888888887663    1


Q ss_pred             C----CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc---cHHHHhcCCC
Q 008437          356 K----TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA---GKEEMNSTPG  428 (565)
Q Consensus       356 ~----~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~---~r~~i~~~~g  428 (565)
                      +    ...+..++-..+|+.+-..++|+.+++...+++...-+++. ....+..++.+|-....+++   +...+++. +
T Consensus       284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~-l  361 (536)
T KOG2734|consen  284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEI-L  361 (536)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHH-H
Confidence            1    13467888899999999999999999998888766655554 34456779999999888776   45566765 6


Q ss_pred             CHHHHHHHhh---------c-CCHHHHHHHHHHHHHhhcCC
Q 008437          429 LVSGLATVLD---------T-GELIEQEQAVSCLFLLCNGN  459 (565)
Q Consensus       429 ~v~~Lv~lL~---------~-~s~~~~e~Av~~L~~Lc~~~  459 (565)
                      |+..+..+..         . .-....|+.+.+|+.+-++.
T Consensus       362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~  402 (536)
T KOG2734|consen  362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL  402 (536)
T ss_pred             hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence            7777666643         1 23456788888888876643

>PTZ00429 beta-adaptin; Provisional

Probab=97.35  E-value=0.039  Score=63.52  Aligned_cols=249  Identities=12%  Similarity=0.068  Sum_probs=154.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN  297 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n  297 (565)
                      +..+-..|.+. +...+.+|++.|-.+...+.+.      .-+.+.+++++.+    .|.+.+......|.+++..+++.
T Consensus        34 ~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S----~d~elKKLvYLYL~~ya~~~pel  102 (746)
T PTZ00429         34 GAELQNDLNGT-DSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPS----TDLELKKLVYLYVLSTARLQPEK  102 (746)
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcccChHH
Confidence            34566777776 7777788887665554333222      2245566777766    68888888888888887533322


Q ss_pred             hHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437          298 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI  375 (565)
Q Consensus       298 k~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~  375 (565)
                      -..     ++..|.+=|.+++.  +..|+.+|.++-..    ..+  .-.++++.+.|.+. ++-+++.|+.++..|-..
T Consensus       103 alL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~----~i~--e~l~~~lkk~L~D~-~pYVRKtAalai~Kly~~  170 (746)
T PTZ00429        103 ALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS----SVL--EYTLEPLRRAVADP-DPYVRKTAAMGLGKLFHD  170 (746)
T ss_pred             HHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH----HHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh
Confidence            111     24556666665554  34455555443211    111  12456677778777 899999999999999654


Q ss_pred             CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008437          376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL  455 (565)
Q Consensus       376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~L  455 (565)
                      ..  ..+.+.|.++.|.+++.+.++.++..|+.+|..+......+-.+. + ..+..|+..|..-+++.|-..+.+|...
T Consensus       171 ~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~-~-~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y  246 (746)
T PTZ00429        171 DM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS-N-EWVNRLVYHLPECNEWGQLYILELLAAQ  246 (746)
T ss_pred             Cc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH-H-HHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence            33  234567888999999999999999999999999986543332222 2 4566777777777888888777776442


Q ss_pred             hcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          456 CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       456 c~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      .-.+....     ..++..+...+.+.++.+.-.|.+++-.+.
T Consensus       247 ~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        247 RPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA  284 (746)
T ss_pred             CCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            21111111     133444444444555656555555555443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.0036  Score=72.47  Aligned_cols=228  Identities=13%  Similarity=0.123  Sum_probs=138.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437          220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK  298 (565)
Q Consensus       220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk  298 (565)
                      .+-.+|.+. +|..|..|+.+|..++.+..+.-.  .. ..+++.++..|.+    +++.+|-.|+.++..++.+-..--
T Consensus       352 ~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~--~~l~~Il~~Vl~~l~D----phprVr~AA~naigQ~stdl~p~i  424 (1075)
T KOG2171|consen  352 ALEAMLQST-EWKERHAALLALSVIAEGCSDVMI--GNLPKILPIVLNGLND----PHPRVRYAALNAIGQMSTDLQPEI  424 (1075)
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHH--HHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHhhhhhhcHHH
Confidence            344566776 999999999999999865543221  12 4455555566655    789999999999999985322222


Q ss_pred             HHHHhcCchHHHHHHhcCCcH---HHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHh-cCCCCHHHHHHHHHHHHHh
Q 008437          299 ELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELC-KGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       299 ~~i~~~G~i~~Lv~lL~s~~~---~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL-~~~~~~~~~~~Al~aL~nL  372 (565)
                      ..-.+.-+++.|+..+++...   ..+|++++.|++..-. +..|.-  .+.+..++.+| .++ .+.+++.++.+|...
T Consensus       425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~-~~~v~e~vvtaIasv  502 (1075)
T KOG2171|consen  425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSS-KPYVQEQAVTAIASV  502 (1075)
T ss_pred             HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHH
Confidence            333344578899999987632   3558888888875422 333332  35555444444 455 899999999999999


Q ss_pred             ccCCCChHHHHHcCchHHHhhccCCC-ChH---HHHHHHHHHHHHhcCcccHHHHhcCC-CCHHHHHHH---hhcCCHHH
Q 008437          373 STIPSNIPNLLSAGIISGLQSLAVPG-DPM---WTEKSLAVLLNLAASAAGKEEMNSTP-GLVSGLATV---LDTGELIE  444 (565)
Q Consensus       373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~-~~~---~~e~al~~L~nLa~~~~~r~~i~~~~-g~v~~Lv~l---L~~~s~~~  444 (565)
                      +...+.+-.=.-.-.+|.|..++... +..   ++-+.+..+..++. .-|++.+.... .++..+..+   ....+...
T Consensus       503 A~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~-AVGke~F~~~a~eliqll~~~~~~~~~~dd~~  581 (1075)
T KOG2171|consen  503 ADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR-AVGKEKFLPLAEELIQLLLELQGSDQDDDDPL  581 (1075)
T ss_pred             HHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH-HhhhhhhhHhHHHHHHHHHhhcccchhhcccc
Confidence            86444332222234677777755443 233   33333334333332 45666665431 233333333   12234556


Q ss_pred             HHHHHHHHHHhhc
Q 008437          445 QEQAVSCLFLLCN  457 (565)
Q Consensus       445 ~e~Av~~L~~Lc~  457 (565)
                      ++.-+..-.++|+
T Consensus       582 ~sy~~~~warmc~  594 (1075)
T KOG2171|consen  582 RSYMIAFWARMCR  594 (1075)
T ss_pred             HHHHHHHHHHHHH
Confidence            6777777777776

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.32  E-value=0.02  Score=62.38  Aligned_cols=263  Identities=16%  Similarity=0.145  Sum_probs=168.0

Q ss_pred             HHHHHHHHhccCccchhhhhccCCHHHHHHHhc------ccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHH
Q 008437          237 IVEQIRLLLKDDEEARVFTGANGFVVALLRFLE------SAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLL  310 (565)
Q Consensus       237 Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~------s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~L  310 (565)
                      |+.+||.+.+ +..+...+....++..|+++-.      ......+..+...|+.+|.|+-..++..|..+++.|..+.+
T Consensus         1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            3567777774 4456666666666777776651      11233578899999999999988888889999999999999


Q ss_pred             HHHhcCC-----cH--HHHHHHHHHHhcCC-CCCchhhcc-CCchHHHHHHhcC--------C--------CCHHHHHHH
Q 008437          311 EKMISNS-----NS--HGAATALYLNLSFL-DDAKPIIGS-SHAVPFLVELCKG--------K--------TEHQCKLDA  365 (565)
Q Consensus       311 v~lL~s~-----~~--~~~A~aaL~nLs~~-~~~k~~I~~-~g~i~~Lv~lL~~--------~--------~~~~~~~~A  365 (565)
                      +..|+..     ..  .-....+|+.++.. .+.+..+.+ .+++..|+..|..        .        .+......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999865     11  23377788877654 455555544 5777777776531        0        144567889


Q ss_pred             HHHHHHhccCCCChHHHHHcCchHHHhhccC---------CCChHHHHHHHHHHHHHhcCc-cc-------HHHH---hc
Q 008437          366 LHALYNLSTIPSNIPNLLSAGIISGLQSLAV---------PGDPMWTEKSLAVLLNLAASA-AG-------KEEM---NS  425 (565)
Q Consensus       366 l~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~---------~~~~~~~e~al~~L~nLa~~~-~~-------r~~i---~~  425 (565)
                      +++|+|+.........--..+.++.|+.++.         .........++.+|.|+-... ..       ...+   ..
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            9999999765443322223445555555321         123345567778888773211 00       0000   12


Q ss_pred             CCCCHHHHHHHhhc----CC----HHHHHHHHHHHHHhhcCChHHHHHHHhC----------------CcHHHHHHhhhc
Q 008437          426 TPGLVSGLATVLDT----GE----LIEQEQAVSCLFLLCNGNEKCCQMVLQE----------------GVIPALVSISVN  481 (565)
Q Consensus       426 ~~g~v~~Lv~lL~~----~s----~~~~e~Av~~L~~Lc~~~~~~~~~v~~~----------------G~v~~Lv~L~~~  481 (565)
                      ....+..|+.+|+.    ..    ...-..-+.+|..+|..+...++.+...                .+-..|+.|+.+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~  319 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS  319 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence            22467778888764    11    1334455667777887766555555431                344568889888


Q ss_pred             CChhHHHHHHHHHHHHHhh
Q 008437          482 GSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       482 ~s~~~k~~A~~lL~~L~~~  500 (565)
                      ..+.+|+.++.+|..|.+.
T Consensus       320 ~~~~~k~~vaellf~Lc~~  338 (446)
T PF10165_consen  320 PDPQLKDAVAELLFVLCKE  338 (446)
T ss_pred             CCchHHHHHHHHHHHHHhh
Confidence            8899999999999988753

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>TIGR02270 conserved hypothetical protein

Probab=97.30  E-value=0.03  Score=60.07  Aligned_cols=221  Identities=16%  Similarity=0.056  Sum_probs=114.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .+..++..|....+.++...++..+...  ++         ..++..|+..|.+    .+..++..++.+|..+-     
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~---------~~~~~~L~~~L~d----~~~~vr~aaa~ALg~i~-----  114 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQ--ED---------ALDLRSVLAVLQA----GPEGLCAGIQAALGWLG-----  114 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhcc--CC---------hHHHHHHHHHhcC----CCHHHHHHHHHHHhcCC-----
Confidence            4455666664433555554444333211  11         1126677777765    45556666666665431     


Q ss_pred             hhHHHHhcCchHHHHHHhcCCcHHHH--HHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437          297 NKELMLAAGVIPLLEKMISNSNSHGA--ATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST  374 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~~~~~--A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~  374 (565)
                            ..+..+.|+.+|.+.+....  ++.++..           ......+.|+.+|++. ++.++..|+.+|..|-.
T Consensus       115 ------~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~-d~~Vra~A~raLG~l~~  176 (410)
T TIGR02270       115 ------GRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHE-DALVRAAALRALGELPR  176 (410)
T ss_pred             ------chHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCC-CHHHHHHHHHHHHhhcc
Confidence                  12345666666765543222  2222211           1123456677777666 67777777777766532


Q ss_pred             CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh---cC------------------CCCHHHH
Q 008437          375 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN---ST------------------PGLVSGL  433 (565)
Q Consensus       375 ~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~---~~------------------~g~v~~L  433 (565)
                                ..+++.|...+.+.++.++..|+..|..+-. ++....+.   ..                  +..+..|
T Consensus       177 ----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L  245 (410)
T TIGR02270       177 ----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWL  245 (410)
T ss_pred             ----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHH
Confidence                      2345555555666666666666666655432 22111111   00                  1223333


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437          434 ATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       434 v~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      ..++..  +.+++.++.+|..+           ....+++.|+.++.+.  ..++.|...++.+.+.+
T Consensus       246 ~~ll~d--~~vr~~a~~AlG~l-----------g~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~  298 (410)
T TIGR02270       246 RELLQA--AATRREALRAVGLV-----------GDVEAAPWCLEAMREP--PWARLAGEAFSLITGMD  298 (410)
T ss_pred             HHHhcC--hhhHHHHHHHHHHc-----------CCcchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence            333332  12444444444322           2235677777766544  49999999999998854

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.028  Score=59.16  Aligned_cols=235  Identities=16%  Similarity=0.089  Sum_probs=162.4

Q ss_pred             HHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC-----ch----hhHHHHhcCch
Q 008437          237 IVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN-----NR----NKELMLAAGVI  307 (565)
Q Consensus       237 Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~-----~~----nk~~i~~~G~i  307 (565)
                      .++.+..+| .-++.--.+++.++++.|+.+|.+    ++..+-...+..|..|+-.+     .+    --..+++.+++
T Consensus       104 ~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgH----eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl  178 (536)
T KOG2734|consen  104 IIQEMHVLA-TMPDLYPILVELNAVQSLLELLGH----ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL  178 (536)
T ss_pred             HHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcC----CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence            566777777 567777788999999999999998    67777777788888876211     11    13345667889


Q ss_pred             HHHHHHhcCCc--------HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhc-CCCCHHHHHHHHHHHHHhccCCC
Q 008437          308 PLLEKMISNSN--------SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCK-GKTEHQCKLDALHALYNLSTIPS  377 (565)
Q Consensus       308 ~~Lv~lL~s~~--------~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~-~~~~~~~~~~Al~aL~nLs~~~~  377 (565)
                      ++|+.-+..-+        ...++.+++.|+... ++....+++.|.+.-|+.-+. ...-..-+..|..+|.-+-.+.+
T Consensus       179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~  258 (536)
T KOG2734|consen  179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD  258 (536)
T ss_pred             HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence            99988875421        134477788887655 556667777777776666333 22123356777888877776554


Q ss_pred             -ChHHHHHcCchHHHhh-cc--CCC------ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHH
Q 008437          378 -NIPNLLSAGIISGLQS-LA--VPG------DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ  447 (565)
Q Consensus       378 -nk~~iv~~G~v~~Lv~-Ll--~~~------~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~  447 (565)
                       |+..+-...+|..|++ +.  +..      .....++.-..|+.+...+++|+.++.. .++... .++.......+..
T Consensus       259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~-EGlqLm-~Lmlr~Kk~sr~S  336 (536)
T KOG2734|consen  259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKG-EGLQLM-NLMLREKKVSRGS  336 (536)
T ss_pred             hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcc-ccHHHH-HHHHHHHHHhhhh
Confidence             8888888999999999 53  211      3445566777777777889999999985 566554 4443446667888


Q ss_pred             HHHHHHHhhcCCh--HHHHHHHhCCcHHHHHHh
Q 008437          448 AVSCLFLLCNGNE--KCCQMVLQEGVIPALVSI  478 (565)
Q Consensus       448 Av~~L~~Lc~~~~--~~~~~v~~~G~v~~Lv~L  478 (565)
                      |+.+|-.+..+++  .++...++.++...+..+
T Consensus       337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHH
Confidence            9999988777665  567777777666666543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=0.002  Score=68.97  Aligned_cols=195  Identities=14%  Similarity=0.063  Sum_probs=139.7

Q ss_pred             HHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHHH--HHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHH
Q 008437          284 AMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG--AATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQ  360 (565)
Q Consensus       284 ~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~--~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~  360 (565)
                      +..|..++.+-.--|--+..+.+.++|+.+|+.++...  .+...+.|+..- ...+.-+...|.|..|+.++.+. +..
T Consensus       410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-Dda  488 (743)
T COG5369         410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-DDA  488 (743)
T ss_pred             HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-hhh
Confidence            44455555432333555667788999999999987653  377778887654 45566667789999999999988 778


Q ss_pred             HHHHHHHHHHHhccCCC--ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc----cHHHHh---cCCCCHH
Q 008437          361 CKLDALHALYNLSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA----GKEEMN---STPGLVS  431 (565)
Q Consensus       361 ~~~~Al~aL~nLs~~~~--nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~----~r~~i~---~~~g~v~  431 (565)
                      .+.+..|+|++|-.+..  .+-..+..-++..++.+..+++-.+++.++.+|.|+.-+..    .+.-..   ...-...
T Consensus       489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk  568 (743)
T COG5369         489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK  568 (743)
T ss_pred             hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence            99999999999986543  35567777889999999999999999999999999876321    111111   1101334


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHh-CCcHHHHHHhh
Q 008437          432 GLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ-EGVIPALVSIS  479 (565)
Q Consensus       432 ~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~-~G~v~~Lv~L~  479 (565)
                      .|++.++..+|...+..+-+|.+++..+++.+..+.+ +..+..+..++
T Consensus       569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         569 RLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             HHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence            5666677778888888899999998877766666664 44444444443

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.19  E-value=0.0042  Score=65.44  Aligned_cols=171  Identities=15%  Similarity=0.146  Sum_probs=127.9

Q ss_pred             hHHHHhcCchHHHHHHhcCCcH----HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437          298 KELMLAAGVIPLLEKMISNSNS----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS  373 (565)
Q Consensus       298 k~~i~~~G~i~~Lv~lL~s~~~----~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs  373 (565)
                      ...|...|++..|++++.+++.    +..|+.+|..+ ...+|+..+...| +..++.+-+....++.....+.+|-++-
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~-~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQI-LVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHH-HhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            3456667999999999998853    34466666554 3346677776544 3444444443335778888999999998


Q ss_pred             cCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc--CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437          374 TIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA--SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS  450 (565)
Q Consensus       374 ~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~--~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~  450 (565)
                      .+. +.+..++++|++..++--.+..++.+...|+-+|.|++.  +.+++..|++. .....|.-+-...++..+-+|+-
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveK-r~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEK-RAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHh-hhhhhhhhhhcchHHHHHHHHHH
Confidence            654 689999999999999987777889999999999999887  55788888886 67777777777778889999999


Q ss_pred             HHHHhhcCChHHHHHHHhCCcH
Q 008437          451 CLFLLCNGNEKCCQMVLQEGVI  472 (565)
Q Consensus       451 ~L~~Lc~~~~~~~~~v~~~G~v  472 (565)
                      +...|+.+.+ .-..+...|.+
T Consensus       330 AV~vlat~KE-~E~~VrkS~Tl  350 (832)
T KOG3678|consen  330 AVAVLATNKE-VEREVRKSGTL  350 (832)
T ss_pred             HHhhhhhhhh-hhHHHhhccch
Confidence            9988888765 45556666543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.15  E-value=0.028  Score=58.98  Aligned_cols=171  Identities=16%  Similarity=0.103  Sum_probs=115.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhccccc-CCCHHHHHHHHHHHHHhhccCch
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC-ERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~-s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      ...++.+|... +.-....+...|..++..+..    -.+.+......++|..... +.+......|+.+|.-+.. -++
T Consensus       116 ~~~fl~ll~r~-d~~iv~~~~~Ils~la~~g~~----~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~e  189 (442)
T KOG2759|consen  116 WLSFLNLLNRQ-DTFIVEMSFRILSKLACFGNC----KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDE  189 (442)
T ss_pred             hHHHHHHHhcC-ChHHHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccc
Confidence            46677888776 777777788888888755431    2222223333333322111 1344555667788888875 578


Q ss_pred             hhHHHHhcCchHHHHHHhcCC--cH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          297 NKELMLAAGVIPLLEKMISNS--NS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~--~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      .|-.++.++++..|+..|.++  ..  +-...-+++.|+..+...+.+...+.|+.|++++++.....+.+-.+.++.||
T Consensus       190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl  269 (442)
T KOG2759|consen  190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL  269 (442)
T ss_pred             hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999533  22  34477778888888777777766799999999999876778889999999999


Q ss_pred             ccCCC-------ChHHHHHcCchHHHhhc
Q 008437          373 STIPS-------NIPNLLSAGIISGLQSL  394 (565)
Q Consensus       373 s~~~~-------nk~~iv~~G~v~~Lv~L  394 (565)
                      ....+       ....++..++.+.+-.|
T Consensus       270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L  298 (442)
T KOG2759|consen  270 LDKGPDRETKKDIASQMVLCKVLKTLQSL  298 (442)
T ss_pred             hccCchhhHHHHHHHHHHhcCchHHHHHH
Confidence            87552       33445555555443334

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.15  E-value=0.028  Score=61.18  Aligned_cols=240  Identities=16%  Similarity=0.142  Sum_probs=154.0

Q ss_pred             CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccC-CCHHHHHHHHHHHHHhhccCchhhHHHHh-cCc
Q 008437          229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCE-RNSYAQEIGAMALFNLAVNNNRNKELMLA-AGV  306 (565)
Q Consensus       229 ~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s-~~~~~q~~A~~aL~nLa~~~~~nk~~i~~-~G~  306 (565)
                      .++++..+|++.|.++.-.++..|..+.+.|..+.|+..|+...+. .+.++.--..++|+-++......+..+++ .++
T Consensus        44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~  123 (446)
T PF10165_consen   44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHG  123 (446)
T ss_pred             CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Confidence            4789999999999999999999999999999999999999875322 25566666777777666555666666665 478


Q ss_pred             hHHHHHHhcCC--------c--------HH---HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC--------CCH
Q 008437          307 IPLLEKMISNS--------N--------SH---GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK--------TEH  359 (565)
Q Consensus       307 i~~Lv~lL~s~--------~--------~~---~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~--------~~~  359 (565)
                      +..|+..|...        .        ..   ..+..+++|+..+......-...+.++.|+.+|..-        ...
T Consensus       124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~  203 (446)
T PF10165_consen  124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLD  203 (446)
T ss_pred             HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcch
Confidence            88888877420        0        11   226778899877643322211245566666654311        133


Q ss_pred             HHHHHHHHHHHHhccCC-CC-------hHH----HHHcCchHHHhhccCC-----CC---hHHHHHHHHHHHHHhcCc-c
Q 008437          360 QCKLDALHALYNLSTIP-SN-------IPN----LLSAGIISGLQSLAVP-----GD---PMWTEKSLAVLLNLAASA-A  418 (565)
Q Consensus       360 ~~~~~Al~aL~nLs~~~-~n-------k~~----iv~~G~v~~Lv~Ll~~-----~~---~~~~e~al~~L~nLa~~~-~  418 (565)
                      ....+++.+|.|+-... +.       ...    -....++..|+.+|+.     ..   .....-.+.+|.+++... .
T Consensus       204 ~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~  283 (446)
T PF10165_consen  204 PPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE  283 (446)
T ss_pred             hhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH
Confidence            56788888888883110 00       100    1123456666665532     11   133445677777777753 3


Q ss_pred             cHHHHh---------------cCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCC
Q 008437          419 GKEEMN---------------STPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG  470 (565)
Q Consensus       419 ~r~~i~---------------~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G  470 (565)
                      .|..+.               .....-..|++++.+..+..+..+...|+.||..+.  .+.+..-|
T Consensus       284 ~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~--~~~v~~~G  348 (446)
T PF10165_consen  284 VRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA--SRFVKYVG  348 (446)
T ss_pred             HHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH--HHHHHHcC
Confidence            333332               123566779999988779999999999999998775  34444444

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.10  E-value=0.0036  Score=61.57  Aligned_cols=182  Identities=17%  Similarity=0.122  Sum_probs=106.5

Q ss_pred             CCHHHHHHHHHHHHHHhccC--ccchhhhhc--cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhc
Q 008437          229 ENLGQKCNIVEQIRLLLKDD--EEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA  304 (565)
Q Consensus       229 ~~~~~q~~Al~~L~~La~~~--~~~r~~i~~--~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~  304 (565)
                      .+|+.|.+|+..|+.+...+  ......+.+  ...+..+...+.+    ....+...|+.+|..|+..- .....-.-.
T Consensus        19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d----~Rs~v~~~A~~~l~~l~~~l-~~~~~~~~~   93 (228)
T PF12348_consen   19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD----LRSKVSKTACQLLSDLARQL-GSHFEPYAD   93 (228)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H----H---HHHHHHHHHHHHHHHH-GGGGHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHH-hHhHHHHHH
Confidence            49999999999999999877  233333322  2445566666654    34567888899888887532 122111123


Q ss_pred             CchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCc-hHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC-ChH
Q 008437          305 GVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHA-VPFLVELCKGKTEHQCKLDALHALYNLSTIPS-NIP  380 (565)
Q Consensus       305 G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~-i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~-nk~  380 (565)
                      ..+|.|+..+.++..  ++.|..+|..+...-..     .... ++.+...+.+. ++.++..++..|..+...-. +..
T Consensus        94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-----~~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSY-----SPKILLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc-----HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHh
Confidence            468888888877643  45677777777543220     1223 46666677777 89999999999998875433 222


Q ss_pred             HHHH----cCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHH
Q 008437          381 NLLS----AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE  421 (565)
Q Consensus       381 ~iv~----~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~  421 (565)
                      .+-.    ..+++.+..++.++++.+++.|-.++..+...-..+.
T Consensus       168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a  212 (228)
T PF12348_consen  168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA  212 (228)
T ss_dssp             GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence            2211    3366677778889999999999999999876544333

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.026  Score=61.01  Aligned_cols=229  Identities=12%  Similarity=0.103  Sum_probs=148.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhh-hccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFT-GANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i-~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      .+.-|+.+|+.. +.++|.-+-..|..+..+-. +.-.. --...++.|+.-+.+    .++.+|..|+.-|..+-.- .
T Consensus       209 ~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~-s~P~s~d~~~~i~vlv~~l~s----s~~~iq~~al~Wi~efV~i-~  281 (675)
T KOG0212|consen  209 LLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIR-SSPSSMDYDDMINVLVPHLQS----SEPEIQLKALTWIQEFVKI-P  281 (675)
T ss_pred             HHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHh-cCccccCcccchhhccccccC----CcHHHHHHHHHHHHHHhcC-C
Confidence            445677888876 77777544444444332210 11111 124456777776665    7899999998877776432 2


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcHH---HHHHH---HHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNSH---GAATA---LYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL  369 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~~---~~A~a---aL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL  369 (565)
                      .+-....-.|++..+...+...+..   +.|..   .|..+...+..+..|.-...|+.|.+.|.++ ..+++..++.-|
T Consensus       282 g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi  360 (675)
T KOG0212|consen  282 GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWI  360 (675)
T ss_pred             CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHH
Confidence            2223333457777777777665432   22221   2333333333333332234678888889888 889999999999


Q ss_pred             HHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437          370 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV  449 (565)
Q Consensus       370 ~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av  449 (565)
                      ..|-....+........+.+.|+.-+.+.+..+...++.+|+++|.++..+.-    -.++..|+++......-....+.
T Consensus       361 ~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~----~~fl~sLL~~f~e~~~~l~~Rg~  436 (675)
T KOG0212|consen  361 ILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL----RKFLLSLLEMFKEDTKLLEVRGN  436 (675)
T ss_pred             HHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH----HHHHHHHHHHHhhhhHHHHhhhh
Confidence            99988888887777788999999967777888999999999999998876522    13455566666555556677777


Q ss_pred             HHHHHhhc
Q 008437          450 SCLFLLCN  457 (565)
Q Consensus       450 ~~L~~Lc~  457 (565)
                      -|+..||.
T Consensus       437 lIIRqlC~  444 (675)
T KOG0212|consen  437 LIIRQLCL  444 (675)
T ss_pred             HHHHHHHH
Confidence            77888875

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.83  E-value=0.0019  Score=53.16  Aligned_cols=86  Identities=24%  Similarity=0.340  Sum_probs=68.8

Q ss_pred             hHHHHHHh-cCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh
Q 008437          346 VPFLVELC-KGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN  424 (565)
Q Consensus       346 i~~Lv~lL-~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~  424 (565)
                      |+.|++.| .++ ++.++..|+.+|..+-          ...+++.|++++.+.++.++..|+.+|..+-          
T Consensus         1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDP-DPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSS-SHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCC-CHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            68999999 555 8999999999998442          2246899999888999999999999999872          


Q ss_pred             cCCCCHHHHHHHhhcC-CHHHHHHHHHHHH
Q 008437          425 STPGLVSGLATVLDTG-ELIEQEQAVSCLF  453 (565)
Q Consensus       425 ~~~g~v~~Lv~lL~~~-s~~~~e~Av~~L~  453 (565)
                      . +.+++.|.+++.+. +..+++.|+.+|.
T Consensus        60 ~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 D-PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             H-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            1 35889999998874 5566898988873

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.83  E-value=0.0015  Score=45.49  Aligned_cols=39  Identities=33%  Similarity=0.434  Sum_probs=35.0

Q ss_pred             CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437          335 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST  374 (565)
Q Consensus       335 ~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~  374 (565)
                      +++..+.+.|+++.|+++|.++ +.++++.|+++|+||+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence            4677888899999999999988 89999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.76  E-value=0.0023  Score=44.61  Aligned_cols=40  Identities=20%  Similarity=0.199  Sum_probs=36.1

Q ss_pred             CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437          376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA  415 (565)
Q Consensus       376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~  415 (565)
                      ++++..+++.|+++.|++++.+++..+++.++++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3478889999999999999988899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.0096  Score=63.87  Aligned_cols=258  Identities=15%  Similarity=0.106  Sum_probs=169.1

Q ss_pred             HHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhc
Q 008437          236 NIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMIS  315 (565)
Q Consensus       236 ~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~  315 (565)
                      .++..|..+++.-.-.|.-+....+++.|+++|+.    ++..+.--+...+.|+...-..-+..+.+.|.|..|+.++.
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~----Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~  483 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN----PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM  483 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC----ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence            45566666666555577778889999999999987    44444555666788876554556888899999999999998


Q ss_pred             CCcH--HHHHHHHHHHhcCCCCC--chhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-C---ChHHHHHcC-
Q 008437          316 NSNS--HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-S---NIPNLLSAG-  386 (565)
Q Consensus       316 s~~~--~~~A~aaL~nLs~~~~~--k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~---nk~~iv~~G-  386 (565)
                      +.+.  +.+..|+|.++..+.+.  |-...+.-++..++.+..++ +-.++...+.+|.|+..+. .   .+...+.+. 
T Consensus       484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p  562 (743)
T COG5369         484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATP  562 (743)
T ss_pred             cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecCh
Confidence            7543  56689999999877543  33444556789999999888 8889999999999997522 2   233333322 


Q ss_pred             ---chHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh-cCCCCHHHHHHHhhc---------CC------------
Q 008437          387 ---IISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN-STPGLVSGLATVLDT---------GE------------  441 (565)
Q Consensus       387 ---~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~-~~~g~v~~Lv~lL~~---------~s------------  441 (565)
                         ....|++.+...++...+..+-+|.+++.+.++...++ +....+..+-++|..         ++            
T Consensus       563 ~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~  642 (743)
T COG5369         563 RRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYT  642 (743)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcccee
Confidence               22334444455566666677888888887776655443 222333333333311         00            


Q ss_pred             --------------------------------HHHHHHHHHHHHHhhc---------CChHHHHHHHhCCcHHHHHHhhh
Q 008437          442 --------------------------------LIEQEQAVSCLFLLCN---------GNEKCCQMVLQEGVIPALVSISV  480 (565)
Q Consensus       442 --------------------------------~~~~e~Av~~L~~Lc~---------~~~~~~~~v~~~G~v~~Lv~L~~  480 (565)
                                                      .+..-..+++..++.-         ...+.++.+.+.|.-..|+.++.
T Consensus       643 ~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~  722 (743)
T COG5369         643 IVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQA  722 (743)
T ss_pred             eecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhc
Confidence                                            0111112222222221         11244556666788888899999


Q ss_pred             cCChhHHHHHHHHHHHHH
Q 008437          481 NGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       481 ~~s~~~k~~A~~lL~~L~  498 (565)
                      ..++.+++++..+|.+|+
T Consensus       723 ~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         723 KDSLIVREKIGTALENLR  740 (743)
T ss_pred             cCcHHHHHHHHHHHHhhh
Confidence            999999999999999876

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=0.041  Score=60.62  Aligned_cols=275  Identities=15%  Similarity=0.122  Sum_probs=173.8

Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhh--hhc--cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHh
Q 008437          215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVF--TGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNL  290 (565)
Q Consensus       215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~--i~~--~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nL  290 (565)
                      -+.++.|..+|.+. +...+..|..+|.+++.++.+.-..  .-.  .-.+|.+++|.++    .++.++..|+.++-.+
T Consensus       127 pelLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h----~spkiRs~A~~cvNq~  201 (885)
T KOG2023|consen  127 PELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH----PSPKIRSHAVGCVNQF  201 (885)
T ss_pred             hhHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC----CChhHHHHHHhhhhhe
Confidence            47888999999887 7778889999999999776543222  111  3357888899888    6889999998877665


Q ss_pred             hccCchhhHHHHhcC-chHHHHHHhcCC--cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437          291 AVNNNRNKELMLAAG-VIPLLEKMISNS--NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALH  367 (565)
Q Consensus       291 a~~~~~nk~~i~~~G-~i~~Lv~lL~s~--~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~  367 (565)
                      -.  ..+...+..-+ .++.|..+-...  +.+.+.+.++..|....-.|..---.++|+.+++.-++. +..+.-.|+.
T Consensus       202 i~--~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACE  278 (885)
T KOG2023|consen  202 II--IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACE  278 (885)
T ss_pred             ee--cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHH
Confidence            43  23444444432 344444444332  346676666665543322221111246778888887777 7888899999


Q ss_pred             HHHHhccCCCChHHHHH--cCchHHHhh-ccCCC-C--------------------------------------------
Q 008437          368 ALYNLSTIPSNIPNLLS--AGIISGLQS-LAVPG-D--------------------------------------------  399 (565)
Q Consensus       368 aL~nLs~~~~nk~~iv~--~G~v~~Lv~-Ll~~~-~--------------------------------------------  399 (565)
                      ....++..+--+..+..  ...||.|+. +..++ +                                            
T Consensus       279 Fwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD  358 (885)
T KOG2023|consen  279 FWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD  358 (885)
T ss_pred             HHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence            99999988744444443  467777776 43211 0                                            


Q ss_pred             ----------hHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhC
Q 008437          400 ----------PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE  469 (565)
Q Consensus       400 ----------~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~  469 (565)
                                -.+++.++++|..|+..  -+..++.+  ..|.|-+.|.+..=.++|.++-+|..++.+.   .+-+...
T Consensus       359 e~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~--l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p~  431 (885)
T KOG2023|consen  359 EDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPI--LLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVPH  431 (885)
T ss_pred             ccccccccccccHhhccHHHHHHHHHh--hHHHHHHH--HHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhcccc
Confidence                      12344455555554431  12233322  3444444454555568999999999988643   2223322


Q ss_pred             --CcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcccC
Q 008437          470 --GVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD  504 (565)
Q Consensus       470 --G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~~  504 (565)
                        -.||.|+.++.+..+-+|....+.|.....+--.+
T Consensus       432 LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~  468 (885)
T KOG2023|consen  432 LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD  468 (885)
T ss_pred             hHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC
Confidence              36788888998888889988888888877664444

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.68  Score=53.77  Aligned_cols=138  Identities=20%  Similarity=0.254  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHhcc-CCCChHHHHH----cCchHHHhhc-cCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHH
Q 008437          361 CKLDALHALYNLST-IPSNIPNLLS----AGIISGLQSL-AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA  434 (565)
Q Consensus       361 ~~~~Al~aL~nLs~-~~~nk~~iv~----~G~v~~Lv~L-l~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv  434 (565)
                      -.+-++.||.||.. +++-...+-.    -|-.+.++.+ -..+++.++..|+.++..+....+....|+.. +++..|+
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATC-NVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhh-hHHHHHH
Confidence            45678899999875 4433222221    2666666663 34578889999999999999999999999986 7888888


Q ss_pred             HHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHH-hhhcCChhHHHHHHHHHHHHHhhc
Q 008437          435 TVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS-ISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       435 ~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~-L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      .+|. +-|..++.++.+|+.|++... .....++.|++--|.+ +..+.++..|..|+.+|..|..++
T Consensus      1820 ~lLH-S~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1820 TLLH-SQPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred             HHHh-cChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence            8885 578899999999999999876 4555566666666654 566677888899999998887543

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.0011  Score=65.89  Aligned_cols=65  Identities=20%  Similarity=0.363  Sum_probs=49.7

Q ss_pred             CCCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 008437           65 QMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIA  133 (565)
Q Consensus        65 ~~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~  133 (565)
                      +...+|  |-|-||++.|.+||++.|||+||-.|-.+.+.. ...|++|++.. +....+...|..+..
T Consensus       236 D~~~~P--f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t-~g~~~~akeL~~~L~  300 (313)
T KOG1813|consen  236 DIELLP--FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT-HGSFNVAKELLVSLK  300 (313)
T ss_pred             CcccCC--ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccc-ccccchHHHHHHHHH
Confidence            334444  889999999999999999999999998888876 46799998865 334445555555443

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0031  Score=62.02  Aligned_cols=50  Identities=24%  Similarity=0.431  Sum_probs=41.9

Q ss_pred             CCCcccccccccccCCceecC-CCcccchHHHHHHHh-cCCCCCCCCCCCCC
Q 008437           69 PPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLS-DGHSTCPKTQQKLP  118 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~-~~~~~cP~t~~~l~  118 (565)
                      -.....||+|++--..|.++. |||.||.-||..-+. ....+||.|+.+..
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            346788999999999999875 999999999998664 34689999998754

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.56  E-value=0.0018  Score=65.41  Aligned_cols=64  Identities=13%  Similarity=0.266  Sum_probs=47.5

Q ss_pred             CCcccccccccccCC--c-e-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc----cHHHHHHHHHH
Q 008437           70 PEELRCPISLQLMYD--P-V-IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP----NYCVKGLIASW  135 (565)
Q Consensus        70 p~~f~CpI~~~~m~d--P-V-~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p----n~~l~~~i~~~  135 (565)
                      ...|.||||+..|..  + | +.+|||.|...+|++--  ....||+|++++...+++|    +..+..+.+.+
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~  182 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERM  182 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCCccHHHHHHHHH
Confidence            567999999999954  2 2 34899999999999883  3557999999999877653    22444444444

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.0011  Score=66.01  Aligned_cols=48  Identities=19%  Similarity=0.276  Sum_probs=43.1

Q ss_pred             cccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 008437           74 RCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC  121 (565)
Q Consensus        74 ~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~  121 (565)
                      .|+||..-|--||.++|+|.||..||.--...+..+||+|+.++++..
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence            499999999999999999999999999877666788999999987643

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.002  Score=66.40  Aligned_cols=46  Identities=22%  Similarity=0.588  Sum_probs=39.7

Q ss_pred             ccccccccccCC--ce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           73 LRCPISLQLMYD--PV-IIASGQTYERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        73 f~CpI~~~~m~d--PV-~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      +.|-||++-+.+  -| +++|+|.|-..||..|+.+....||+|++...
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            899999988764  44 78999999999999999987677999998654

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.51  E-value=0.089  Score=51.62  Aligned_cols=178  Identities=13%  Similarity=0.097  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhc----CCCCHHHHHHHHHHHHHhccCCC--ChHHHHHcCchHHHhh
Q 008437          320 HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK----GKTEHQCKLDALHALYNLSTIPS--NIPNLLSAGIISGLQS  393 (565)
Q Consensus       320 ~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~----~~~~~~~~~~Al~aL~nLs~~~~--nk~~iv~~G~v~~Lv~  393 (565)
                      .-+|.++|.-++++++.|..+.....--.|-.+|.    +...+-.+-.++++|..|..+++  ....+...++||..++
T Consensus        96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            45688888889999999988887665444445544    33355678899999999987654  6667788999999999


Q ss_pred             ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCC-------CCHHHHHHH-hhcCCHHHHHHHHHHHHHhhcCChHHHHH
Q 008437          394 LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTP-------GLVSGLATV-LDTGELIEQEQAVSCLFLLCNGNEKCCQM  465 (565)
Q Consensus       394 Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~-------g~v~~Lv~l-L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~  465 (565)
                      +++.|+...+..|+-+|..+-.++.|-.-|..+.       ..+..++.- ....+++.-.+++++..+||.+.. .+..
T Consensus       176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr-ar~a  254 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR-ARAA  254 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH-HHHH
Confidence            9999999888999999998888777666543321       123333333 334799999999999999998775 3433


Q ss_pred             HHhC---CcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          466 VLQE---GVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       466 v~~~---G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      +..-   +.-..=..+....+..+|..-+.+|.++.
T Consensus       255 L~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~  290 (293)
T KOG3036|consen  255 LRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC  290 (293)
T ss_pred             HHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence            3321   22222233444566677777777777664

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=96.50  E-value=0.0024  Score=52.24  Aligned_cols=46  Identities=28%  Similarity=0.519  Sum_probs=35.3

Q ss_pred             ccccccccccCC-ceec-CCCcccchHHHHHHHhc--CCCCCCCCCCCCC
Q 008437           73 LRCPISLQLMYD-PVII-ASGQTYERICIEKWLSD--GHSTCPKTQQKLP  118 (565)
Q Consensus        73 f~CpI~~~~m~d-PV~~-~~g~ty~r~~I~~~~~~--~~~~cP~t~~~l~  118 (565)
                      -.||.|...=.| |++. .|||.|-..||.+|+..  .+.+||.|+++..
T Consensus        33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            346666655445 6655 69999999999999985  4678999998754

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.49  E-value=0.016  Score=56.86  Aligned_cols=152  Identities=11%  Similarity=0.063  Sum_probs=95.5

Q ss_pred             CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437          344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM  423 (565)
Q Consensus       344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i  423 (565)
                      ..+..++..+.+. ...+.+.|+.+|..|+..-...-.-.-...+|.|++.+.+....+.+.|..+|..++..-..-..+
T Consensus        53 ~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~  131 (228)
T PF12348_consen   53 QLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI  131 (228)
T ss_dssp             ---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH
T ss_pred             HhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH
Confidence            3456666666665 566888899999998865444433333458889999887788889999999999998854311111


Q ss_pred             hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHH----hCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          424 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVL----QEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       424 ~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~----~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      +     +..+...+.+.++.++..++..|..+..........+.    -..+++.|..++.+.++.+|+.|..++..|..
T Consensus       132 ~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  132 L-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             H-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            1     34455566778999999999999887764431111111    13467778889999999999999999999865


Q ss_pred             hc
Q 008437          500 QR  501 (565)
Q Consensus       500 ~r  501 (565)
                      .-
T Consensus       207 ~~  208 (228)
T PF12348_consen  207 HF  208 (228)
T ss_dssp             HH
T ss_pred             HC
Confidence            53

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.49  E-value=0.048  Score=50.39  Aligned_cols=121  Identities=18%  Similarity=0.129  Sum_probs=95.4

Q ss_pred             hccCCchHHHHHHhcCCCC-----HHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCC--CChHHHHHHHHHHHH
Q 008437          340 IGSSHAVPFLVELCKGKTE-----HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP--GDPMWTEKSLAVLLN  412 (565)
Q Consensus       340 I~~~g~i~~Lv~lL~~~~~-----~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~--~~~~~~e~al~~L~n  412 (565)
                      +...+|+..|+++++++..     ......++.++..|-.+.-.-...++.-.|..++..+..  .+..+...|+++|.+
T Consensus         7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs   86 (160)
T PF11841_consen    7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILES   86 (160)
T ss_pred             HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHH
Confidence            3456888999999988832     366777888888887665555566666677777775433  368899999999999


Q ss_pred             HhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh
Q 008437          413 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE  460 (565)
Q Consensus       413 La~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~  460 (565)
                      ++.+.......+...=-++.|+..|...++..+.+|++.+-.|....+
T Consensus        87 ~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   87 IVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             HHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence            999888877777666789999999999999999999999988876544

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.11  Score=52.85  Aligned_cols=248  Identities=16%  Similarity=0.106  Sum_probs=162.5

Q ss_pred             CHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHH
Q 008437          230 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPL  309 (565)
Q Consensus       230 ~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~  309 (565)
                      +.-.|.+.+..|-.+.+-+++.-...-..|.+..|..-|...   .|.-+..+.+.....|+. .+..++.+.+.|.|..
T Consensus       184 ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt---eDtLVianciElvteLae-teHgreflaQeglIdl  259 (524)
T KOG4413|consen  184 NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT---EDTLVIANCIELVTELAE-TEHGREFLAQEGLIDL  259 (524)
T ss_pred             hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC---cceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHH
Confidence            444566666767777666666666667789888887777642   566666777777777774 4567888889999999


Q ss_pred             HHHHhcCCcH----HHHHHH----HHHHhcCCCCCchhhcc--CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCh
Q 008437          310 LEKMISNSNS----HGAATA----LYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNI  379 (565)
Q Consensus       310 Lv~lL~s~~~----~~~A~a----aL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk  379 (565)
                      +.+++...++    .-.++.    .+.+++.-+-.-+++.+  .-+|+..++++... |+...+.|..+|.-|-++-+.+
T Consensus       260 icnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGa  338 (524)
T KOG4413|consen  260 ICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGA  338 (524)
T ss_pred             HHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchh
Confidence            9999975422    111222    22222222222233333  13566677778777 8999999999999999999988


Q ss_pred             HHHHHcCc--hHHHhh-ccCCCChHHHHHHHHHHHHHhcCc--------ccHH------HHhcCC------CCHHHHHHH
Q 008437          380 PNLLSAGI--ISGLQS-LAVPGDPMWTEKSLAVLLNLAASA--------AGKE------EMNSTP------GLVSGLATV  436 (565)
Q Consensus       380 ~~iv~~G~--v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~--------~~r~------~i~~~~------g~v~~Lv~l  436 (565)
                      ..+...|-  ...|+. ........-++.++.+|.+++.--        +|+.      .+.+..      .-......+
T Consensus       339 dlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgi  418 (524)
T KOG4413|consen  339 DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGI  418 (524)
T ss_pred             HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHH
Confidence            88888763  455555 554443444677888888888621        2222      111110      112334445


Q ss_pred             hhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC
Q 008437          437 LDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG  482 (565)
Q Consensus       437 L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~  482 (565)
                      +....++..-.+..++..|+........++..+|.|...++-...-
T Consensus       419 lqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEh  464 (524)
T KOG4413|consen  419 LQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEH  464 (524)
T ss_pred             HcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhh
Confidence            5556889999999999999998876666666788887777655543

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.46  E-value=0.0091  Score=51.03  Aligned_cols=68  Identities=22%  Similarity=0.273  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHh
Q 008437          234 KCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA  303 (565)
Q Consensus       234 q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~  303 (565)
                      |...++.|.+++..+..+...+.+.|+|+.+++...-  +..++-+++.|+.+|+||+..+++|...|.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i--D~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI--DDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC--CcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4566888999999999999999999999999987643  4578999999999999999999999888875

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.0012  Score=73.61  Aligned_cols=46  Identities=24%  Similarity=0.649  Sum_probs=41.1

Q ss_pred             CcccccccccccCC-----ceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYD-----PVIIASGQTYERICIEKWLSDGHSTCPKTQQKL  117 (565)
Q Consensus        71 ~~f~CpI~~~~m~d-----PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l  117 (565)
                      .+-.|+||.+.|..     |-.++|||.|...|+.+||+. ..+||.|+..+
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~  340 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL  340 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence            36789999999999     678999999999999999997 78999998743

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.30  E-value=0.0017  Score=68.76  Aligned_cols=50  Identities=20%  Similarity=0.420  Sum_probs=43.3

Q ss_pred             CcccccccccccCCceecCCCcccchHHHHHHHhc----CCCCCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSD----GHSTCPKTQQKLPHL  120 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~----~~~~cP~t~~~l~~~  120 (565)
                      .+..|-+|.+.-.||+...|.|+|||.||.++...    .+-+||.|..+|+.+
T Consensus       535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            56889999999999999999999999999888642    357899998888754

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.26  E-value=0.27  Score=54.02  Aligned_cols=218  Identities=19%  Similarity=0.093  Sum_probs=136.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .+..++..|... ...+|......|..+.....    .....-+.+.+.+++..    .+..-+..|+..+..+..  .-
T Consensus        97 ~~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~----~~~~~~~l~~l~~ll~~----~~~~~~~~aa~~~ag~v~--g~  165 (569)
T KOG1242|consen   97 IIEILLEELDTP-SKSVQRAVSTCLPPLVVLSK----GLSGEYVLELLLELLTS----TKIAERAGAAYGLAGLVN--GL  165 (569)
T ss_pred             HHHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhh----ccCHHHHHHHHHHHhcc----ccHHHHhhhhHHHHHHHc--Cc
Confidence            456677777776 77888877777777653221    11123346677777775    566677888888888753  33


Q ss_pred             hhHHHHhcCchHHHHHHhcCCcH---HHHH-HHHHHHhcCCCCCchhhccCCchHHHHHHhcCC--CCHHHHHHHHHHHH
Q 008437          297 NKELMLAAGVIPLLEKMISNSNS---HGAA-TALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK--TEHQCKLDALHALY  370 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~~---~~~A-~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~--~~~~~~~~Al~aL~  370 (565)
                      .-..+.+.+.+..|...+.....   ++.+ .+...+....    ....+...++.|..+|.+-  ....++..|..+..
T Consensus       166 ~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L----g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~k  241 (569)
T KOG1242|consen  166 GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL----GPPFEPYIVPILPSILTNFGDKINKVREAAVEAAK  241 (569)
T ss_pred             HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc----CCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHH
Confidence            55666677888888888876432   3311 1111111111    1223456677777766532  14556666666655


Q ss_pred             HhccCCCChHHHHHcCchHHHhh-ccCC---CChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHH
Q 008437          371 NLSTIPSNIPNLLSAGIISGLQS-LAVP---GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQE  446 (565)
Q Consensus       371 nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~---~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e  446 (565)
                      .+-..       +...+|+.++. ++.+   ..-..+..++.+|..|+.+....-+... +..|+.|.+.|-+..+++++
T Consensus       242 ai~~~-------~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~  313 (569)
T KOG1242|consen  242 AIMRC-------LSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRK  313 (569)
T ss_pred             HHHHh-------cCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHH
Confidence            54221       22334444333 3221   2234457788999999998877777766 48999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 008437          447 QAVSCLFLLCN  457 (565)
Q Consensus       447 ~Av~~L~~Lc~  457 (565)
                      .+..+|..+|.
T Consensus       314 a~~~~l~~~~s  324 (569)
T KOG1242|consen  314 AGIETLLKFGS  324 (569)
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.21  E-value=0.28  Score=56.30  Aligned_cols=273  Identities=15%  Similarity=0.157  Sum_probs=155.6

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      .++ .|++.+.+. |-+.|.-|...|-.=...+.-.-..=.+...+..|+++|++    .+.++|..|+.+|.-|+.   
T Consensus         6 ~~i-~Llekmtss-DKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D----~ngEVQnlAVKClg~lvs---   76 (1233)
T KOG1824|consen    6 VGI-NLLEKMTSS-DKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED----KNGEVQNLAVKCLGPLVS---   76 (1233)
T ss_pred             HHH-HHHHHccCC-CcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHh---
Confidence            344 788888887 88888888877766543332111122235678899999987    678999999999998862   


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcHH---HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcC-----CCCHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG-----KTEHQCKLDALH  367 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~~---~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~-----~~~~~~~~~Al~  367 (565)
                      ..++.=++. .++.|..-+-++..+   ..+.+.....+.............+.+.+...|..     +....++-.++.
T Consensus        77 Kvke~~le~-~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lD  155 (1233)
T KOG1824|consen   77 KVKEDQLET-IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLD  155 (1233)
T ss_pred             hchHHHHHH-HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHH
Confidence            122221111 122233222233222   22444443344332211111122333333333332     213346666777


Q ss_pred             HHHHhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHH
Q 008437          368 ALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQ  445 (565)
Q Consensus       368 aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~  445 (565)
                      .|..+-+.- +--.. ...++...++.-+......++++++.+|..|+..- ++....   +.+..|++=|.. ..+...
T Consensus       156 il~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~---~li~~Ll~~L~~~~q~~~~  230 (1233)
T KOG1824|consen  156 ILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYV---ELIEHLLKGLSNRTQMSAT  230 (1233)
T ss_pred             HHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHH---HHHHHHHhccCCCCchHHH
Confidence            666553321 11111 23455555666555566788899999999998843 333332   234455555543 456666


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhh---hcCChhHHHHHHHHHHHHHhhcccC
Q 008437          446 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS---VNGSTRGRDKAQRLLMLFREQRQRD  504 (565)
Q Consensus       446 e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~---~~~s~~~k~~A~~lL~~L~~~r~~~  504 (565)
                      ..-+.+|..+|+.... +-----...+|.+.+..   ...+++.|++...+|..+-+.-+.+
T Consensus       231 rt~Iq~l~~i~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e  291 (1233)
T KOG1824|consen  231 RTYIQCLAAICRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE  291 (1233)
T ss_pred             HHHHHHHHHHHHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence            6777788888876542 11111235778887777   7789999999999999976555555

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.19  E-value=0.0024  Score=59.58  Aligned_cols=44  Identities=16%  Similarity=0.363  Sum_probs=39.2

Q ss_pred             ccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437           73 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL  117 (565)
Q Consensus        73 f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l  117 (565)
                      |.|-||.+-++.||++.|||.||-.|--+-+.. .++|-+|+...
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence            999999999999999999999999998777765 56899998754

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.16  E-value=0.52  Score=52.71  Aligned_cols=212  Identities=12%  Similarity=0.106  Sum_probs=115.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .++.|+..|... |+.++..|+..|..||+.++++.-.+     -|.+..+|....  ++- +...-+....+|+.-.++
T Consensus       182 ~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSs--NNW-mLIKiiKLF~aLtplEPR  252 (877)
T KOG1059|consen  182 CFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSS--NNW-VLIKLLKLFAALTPLEPR  252 (877)
T ss_pred             hHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccC--CCe-ehHHHHHHHhhccccCch
Confidence            345566666655 66666666666666666666655443     255555554321  121 222333444444433333


Q ss_pred             hhHHHHhcCchHHHHHHhcCCcHHHHHHHHHH---------HhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHH
Q 008437          297 NKELMLAAGVIPLLEKMISNSNSHGAATALYL---------NLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDAL  366 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~---------nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al  366 (565)
                      -.+     ..+++|.+++.+...    +.+|+         +++.. .+.-..+.  -++..|-.++.+. |+..+--++
T Consensus       253 LgK-----KLieplt~li~sT~A----mSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fieds-DqNLKYlgL  320 (877)
T KOG1059|consen  253 LGK-----KLIEPITELMESTVA----MSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDS-DQNLKYLGL  320 (877)
T ss_pred             hhh-----hhhhHHHHHHHhhHH----HHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcC-CccHHHHHH
Confidence            322     246777777766532    22222         22222 11111111  1455666666666 788888888


Q ss_pred             HHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCH-HHH
Q 008437          367 HALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGEL-IEQ  445 (565)
Q Consensus       367 ~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~-~~~  445 (565)
                      -|++-+...+.   .+|.+ --+.+++.|.+.+..++-.|+.+|.-+.. .++-.+|+.      .|+..+...++ .-+
T Consensus       321 lam~KI~ktHp---~~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIVk------~LM~~~~~ae~t~yr  389 (877)
T KOG1059|consen  321 LAMSKILKTHP---KAVQA-HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIVK------TLMKHVEKAEGTNYR  389 (877)
T ss_pred             HHHHHHhhhCH---HHHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHHH------HHHHHHHhccchhHH
Confidence            88887765332   22322 12345667788899999999999998887 445555543      35554444333 445


Q ss_pred             HHHHHHHHHhhcCCh
Q 008437          446 EQAVSCLFLLCNGNE  460 (565)
Q Consensus       446 e~Av~~L~~Lc~~~~  460 (565)
                      ..-+.-+..+|+.+.
T Consensus       390 dell~~II~iCS~sn  404 (877)
T KOG1059|consen  390 DELLTRIISICSQSN  404 (877)
T ss_pred             HHHHHHHHHHhhhhh
Confidence            555555667787653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.15  E-value=0.17  Score=58.59  Aligned_cols=238  Identities=13%  Similarity=0.013  Sum_probs=152.6

Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHH-HHhhcc
Q 008437          215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMAL-FNLAVN  293 (565)
Q Consensus       215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL-~nLa~~  293 (565)
                      -|.++-+++.|-+   .--|..|+..|..+..-.+=.-..-..-|+.|-++++|.+.    -.+++-.-+.+= .-||. 
T Consensus       471 PeQLPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~----a~ELrpiLVFIWAKILAv-  542 (1387)
T KOG1517|consen  471 PEQLPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS----ARELRPILVFIWAKILAV-  542 (1387)
T ss_pred             hHhcchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc----hHhhhhhHHHHHHHHHhc-
Confidence            3666777776642   34466667666666644443334445689999999999983    344443322221 23565 


Q ss_pred             CchhhHHHHhcCchHHHHHHhcCC---cHHHH--HHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437          294 NNRNKELMLAAGVIPLLEKMISNS---NSHGA--ATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALH  367 (565)
Q Consensus       294 ~~~nk~~i~~~G~i~~Lv~lL~s~---~~~~~--A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~  367 (565)
                      ++.....+++.++-.-.+.+|..+   +....  |+-+|..+..+ .-.+....+.+.|..-+..|.++..+-.+.-.+-
T Consensus       543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i  622 (1387)
T KOG1517|consen  543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI  622 (1387)
T ss_pred             CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence            466677777776666666677652   11222  33344444433 3344555556777777777877535778888888


Q ss_pred             HHHHhcc-CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC-----cccHHHH---hc-------CCCCH-
Q 008437          368 ALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-----AAGKEEM---NS-------TPGLV-  430 (565)
Q Consensus       368 aL~nLs~-~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~-----~~~r~~i---~~-------~~g~v-  430 (565)
                      +|..|=. .+++|..=++.++.+.|+.++.+.-++++..|+-+|..+...     ++....+   +.       .+..+ 
T Consensus       623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~  702 (1387)
T KOG1517|consen  623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII  702 (1387)
T ss_pred             HHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence            8888865 456777778899999999999889999999999999888774     2211111   10       01222 


Q ss_pred             ---HHHHHHhhcCCHHHHHHHHHHHHHhhcCCh
Q 008437          431 ---SGLATVLDTGELIEQEQAVSCLFLLCNGNE  460 (565)
Q Consensus       431 ---~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~  460 (565)
                         ..|+.++..+++-++...+.+|..+..+..
T Consensus       703 ~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~  735 (1387)
T KOG1517|consen  703 KGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV  735 (1387)
T ss_pred             hhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence               367777778888888877777777766554

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.14  E-value=0.0039  Score=60.28  Aligned_cols=54  Identities=19%  Similarity=0.364  Sum_probs=47.5

Q ss_pred             CcccccccccccCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437           71 EELRCPISLQLMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN  125 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn  125 (565)
                      ..|.||+|.+.+.+-+    .-+|||.|+..|.++.+.. ...||+|+.++.+.++++-
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~L  277 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIGL  277 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEee
Confidence            5799999999999875    3479999999999999874 7889999999999988874

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.12  E-value=0.011  Score=48.49  Aligned_cols=85  Identities=22%  Similarity=0.278  Sum_probs=65.9

Q ss_pred             hHHHhhcc-CCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 008437          388 ISGLQSLA-VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMV  466 (565)
Q Consensus       388 v~~Lv~Ll-~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v  466 (565)
                      |+.|++.+ .+.++.++..++.+|..+-.           +.+++.|++++.+.++.++..|+.+|..+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57889955 88899999999999884421           145889999999999999999999998762          


Q ss_pred             HhCCcHHHHHHhhhcCC-hhHHHHHHHHH
Q 008437          467 LQEGVIPALVSISVNGS-TRGRDKAQRLL  494 (565)
Q Consensus       467 ~~~G~v~~Lv~L~~~~s-~~~k~~A~~lL  494 (565)
                       ...+++.|..++.+.. ..+|..|...|
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence             2347889998777754 55588887766

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=0.21  Score=55.76  Aligned_cols=218  Identities=15%  Similarity=0.175  Sum_probs=146.6

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      +....++.+|++. -+-+|.+|+..+..+.-..++ .|.+      +|.|+.=|..    +|+.+|-.|+.+++.||.-+
T Consensus       144 DLa~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPeAlr~~------FprL~EkLeD----pDp~V~SAAV~VICELArKn  212 (877)
T KOG1059|consen  144 DLADDVFTLLNSS-KPYVRKKAILLLYKVFLKYPEALRPC------FPRLVEKLED----PDPSVVSAAVSVICELARKN  212 (877)
T ss_pred             HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhhhHhHhhh------HHHHHHhccC----CCchHHHHHHHHHHHHHhhC
Confidence            4567889999987 788999999888877544333 4433      6888888877    79999999999999999877


Q ss_pred             chhhHHHHhcCchHHHHHHhcCC-cHH--HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH-
Q 008437          295 NRNKELMLAAGVIPLLEKMISNS-NSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY-  370 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~-~~~--~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~-  370 (565)
                      +.|-..+     -|.+.++|... +.+  ....-+..+|+-.+   ..++ ...+++|.+++.+..-....=.++.++- 
T Consensus       213 PknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplE---PRLg-KKLieplt~li~sT~AmSLlYECvNTVVa  283 (877)
T KOG1059|consen  213 PQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLE---PRLG-KKLIEPITELMESTVAMSLLYECVNTVVA  283 (877)
T ss_pred             Ccccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccC---chhh-hhhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence            7775544     46777777544 222  33444444454432   2232 3578999999987521222222222222 


Q ss_pred             -HhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437          371 -NLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV  449 (565)
Q Consensus       371 -nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av  449 (565)
                       +++....+....+.. +++.|-.++.+.++.++...+-++..+.....  ..+-.+   -..+++.|.+.++.++-.|+
T Consensus       284 ~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp--~~Vqa~---kdlIlrcL~DkD~SIRlrAL  357 (877)
T KOG1059|consen  284 VSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP--KAVQAH---KDLILRCLDDKDESIRLRAL  357 (877)
T ss_pred             ehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH--HHHHHh---HHHHHHHhccCCchhHHHHH
Confidence             333434455555554 67777778888999999988888888877432  222222   35677889999999999999


Q ss_pred             HHHHHhhcCC
Q 008437          450 SCLFLLCNGN  459 (565)
Q Consensus       450 ~~L~~Lc~~~  459 (565)
                      ..|+.+....
T Consensus       358 dLl~gmVskk  367 (877)
T KOG1059|consen  358 DLLYGMVSKK  367 (877)
T ss_pred             HHHHHHhhhh
Confidence            9998877643

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.08  E-value=0.0039  Score=60.23  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=31.9

Q ss_pred             CCCcccccccccccCCceecCCCcccchHHHHHHHh
Q 008437           69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLS  104 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~  104 (565)
                      +-+.=+|.+|++.++|||+.+.||.|||+||.+++.
T Consensus        40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL   75 (303)
T ss_pred             cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence            333457999999999999999999999999999875

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.05  E-value=0.03  Score=47.89  Aligned_cols=65  Identities=17%  Similarity=0.257  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHH--hhcCCHHHHHHHHHHHHHhhcCChHHHHHHHh
Q 008437          403 TEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATV--LDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ  468 (565)
Q Consensus       403 ~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~l--L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~  468 (565)
                      +...+.+|+|||. +...+..+.+. |+++.++..  ++..+|-.+|.|+.++.+||.+++++++.+.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4678899999997 56677778776 789998887  45578999999999999999999988776654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.03  E-value=0.09  Score=48.62  Aligned_cols=117  Identities=14%  Similarity=0.127  Sum_probs=96.8

Q ss_pred             HHHHHcCchHHHhhccCCCC------hHHHHHHHHHHHHHhcCcc-cHHHHhcCCCCHHHHHHHhhcC--CHHHHHHHHH
Q 008437          380 PNLLSAGIISGLQSLAVPGD------PMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVS  450 (565)
Q Consensus       380 ~~iv~~G~v~~Lv~Ll~~~~------~~~~e~al~~L~nLa~~~~-~r~~i~~~~g~v~~Lv~lL~~~--s~~~~e~Av~  450 (565)
                      ..++..|++..|++++.++.      ..+...++.++..|..+.- ++ ..+.. ..|..++.++...  +..+.+.|++
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~-~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSD-SFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccH-HHHHHHHHHHccccccchHHHHHHH
Confidence            45778899999999887755      3666788999999988765 44 44443 6888899988753  6889999999


Q ss_pred             HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      +|-++..++...-..|.++=-++.|+..+...++..+.+|..++..|-
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~  130 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF  130 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999999877888888888999999888899999999999998865

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.01  E-value=0.44  Score=52.42  Aligned_cols=229  Identities=15%  Similarity=0.083  Sum_probs=132.8

Q ss_pred             hhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc-CchhhHHHHhcCchHHHHHHhcCC--cHHHHHHHHHHHhc
Q 008437          255 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-NNRNKELMLAAGVIPLLEKMISNS--NSHGAATALYLNLS  331 (565)
Q Consensus       255 i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~-~~~nk~~i~~~G~i~~Lv~lL~s~--~~~~~A~aaL~nLs  331 (565)
                      ..+.+.++.|..+|.+. .+....+++.|..+...+-.. +...-+.     .+|.++.-+...  .+...++..|..++
T Consensus       209 ~~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~  282 (569)
T KOG1242|consen  209 PFEPYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMA  282 (569)
T ss_pred             CCCchHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            45677777777777652 224455665555544433210 1111111     133333333322  23455666666666


Q ss_pred             CCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHH
Q 008437          332 FLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL  411 (565)
Q Consensus       332 ~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~  411 (565)
                      ....-.-......+||.|.+.|.+. .+++++.+..+|..++..-+|....-   .+|.|++-+.++... ...++..|.
T Consensus       283 ~~ap~qLs~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~dI~~---~ip~Lld~l~dp~~~-~~e~~~~L~  357 (569)
T KOG1242|consen  283 DCAPKQLSLCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPDIQK---IIPTLLDALADPSCY-TPECLDSLG  357 (569)
T ss_pred             HhchHHHHHHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHHHHH---HHHHHHHHhcCcccc-hHHHHHhhc
Confidence            5544444444578999999999888 99999999999999998777765221   567777744443322 244444443


Q ss_pred             HHhcCcccHHHHhcCCCCHHHHHHHhhc----CCHHHHHHHHHHHHHhhcCCh--HHHHHHHhCCcHHHHHHhhhcCChh
Q 008437          412 NLAASAAGKEEMNSTPGLVSGLATVLDT----GELIEQEQAVSCLFLLCNGNE--KCCQMVLQEGVIPALVSISVNGSTR  485 (565)
Q Consensus       412 nLa~~~~~r~~i~~~~g~v~~Lv~lL~~----~s~~~~e~Av~~L~~Lc~~~~--~~~~~v~~~G~v~~Lv~L~~~~s~~  485 (565)
                      .-....     .++ +-.+..++.+|.+    .+...+..++.+.+|+|+--+  ....-.+ .-++|.|-..+....++
T Consensus       358 ~ttFV~-----~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PE  430 (569)
T KOG1242|consen  358 ATTFVA-----EVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPE  430 (569)
T ss_pred             ceeeee-----eec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChh
Confidence            322211     122 1345555666554    466778999999999998543  2111111 13455555555566899


Q ss_pred             HHHHHHHHHH-HHHhhc
Q 008437          486 GRDKAQRLLM-LFREQR  501 (565)
Q Consensus       486 ~k~~A~~lL~-~L~~~r  501 (565)
                      +|.-|.++|- ++++.+
T Consensus       431 vR~vaarAL~~l~e~~g  447 (569)
T KOG1242|consen  431 VRAVAARALGALLERLG  447 (569)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            9999999994 444443

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=95.98  E-value=0.68  Score=47.40  Aligned_cols=240  Identities=13%  Similarity=0.152  Sum_probs=155.1

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhccCccc--h--hhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhH
Q 008437          224 VLNEGENLGQKCNIVEQIRLLLKDDEEA--R--VFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE  299 (565)
Q Consensus       224 ~L~s~~~~~~q~~Al~~L~~La~~~~~~--r--~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~  299 (565)
                      -|... +..++.-+++.+.-+..+.+.+  .  ..++.+|.++.++..+..    .|.++...|...|..++.. +..-.
T Consensus        90 GLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg----eddeVAkAAiesikrialf-paale  163 (524)
T KOG4413|consen   90 GLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG----EDDEVAKAAIESIKRIALF-PAALE  163 (524)
T ss_pred             cccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC----CcHHHHHHHHHHHHHHHhc-HHHHH
Confidence            34444 6778888888888888665532  2  234578999999999877    6888999999999999864 55666


Q ss_pred             HHHhcCchHHHH--HH-hcCCc-HHHHHHHHHHHhc-CCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437          300 LMLAAGVIPLLE--KM-ISNSN-SHGAATALYLNLS-FLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST  374 (565)
Q Consensus       300 ~i~~~G~i~~Lv--~l-L~s~~-~~~~A~aaL~nLs-~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~  374 (565)
                      .+.+......+-  ++ .+..+ .+......+..+. ..++.......+|.+..|..=|+-..|.-++.+++...+.|..
T Consensus       164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae  243 (524)
T KOG4413|consen  164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE  243 (524)
T ss_pred             HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence            666665544332  22 12222 2334455554443 3344444555578887777666642367788899999999998


Q ss_pred             CCCChHHHHHcCchHHHhhccCC--CChHHHHHHHHHHHHHhc----CcccHHHHhcC-CCCHHHHHHHhhcCCHHHHHH
Q 008437          375 IPSNIPNLLSAGIISGLQSLAVP--GDPMWTEKSLAVLLNLAA----SAAGKEEMNST-PGLVSGLATVLDTGELIEQEQ  447 (565)
Q Consensus       375 ~~~nk~~iv~~G~v~~Lv~Ll~~--~~~~~~e~al~~L~nLa~----~~~~r~~i~~~-~g~v~~Lv~lL~~~s~~~~e~  447 (565)
                      .+..+..+.+.|.|+.+-.++..  .++--.-.++.....+-.    -.-.-+++++. .-+|....+++...++..++.
T Consensus       244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaiea  323 (524)
T KOG4413|consen  244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEA  323 (524)
T ss_pred             HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHH
Confidence            88899999999999999995532  333333334444333322    11111222211 123444566677789999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHhCC
Q 008437          448 AVSCLFLLCNGNEKCCQMVLQEG  470 (565)
Q Consensus       448 Av~~L~~Lc~~~~~~~~~v~~~G  470 (565)
                      |+.+|..+-++.++ .+.++..|
T Consensus       324 AiDalGilGSnteG-adlllkTg  345 (524)
T KOG4413|consen  324 AIDALGILGSNTEG-ADLLLKTG  345 (524)
T ss_pred             HHHHHHhccCCcch-hHHHhccC
Confidence            99999999887764 55666665

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.0031  Score=63.53  Aligned_cols=55  Identities=27%  Similarity=0.547  Sum_probs=46.1

Q ss_pred             CCCCCCCCCcccccccccccCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           63 SGQMPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        63 ~~~~~~~p~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      ++.....|+.=.||||++--.+|-++. +|..||-.||-++... +.+||+|+.|..
T Consensus       291 se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~  346 (357)
T KOG0826|consen  291 SESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS  346 (357)
T ss_pred             cccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence            344556678889999999888887775 7999999999999984 788999998764

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.96  E-value=0.12  Score=58.38  Aligned_cols=244  Identities=14%  Similarity=0.091  Sum_probs=153.2

Q ss_pred             HHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHH-HhhccCchhhHHHHhcCchHHHHHHhcCCcH-H
Q 008437          243 LLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF-NLAVNNNRNKELMLAAGVIPLLEKMISNSNS-H  320 (565)
Q Consensus       243 ~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~-nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-~  320 (565)
                      .++.....-|...++.|+.+.|+++...    ........+..+|. .+....+  +    ...+++++.+.+.+... .
T Consensus       488 ~~aA~~K~~~~~~Ik~~~~~aLlrl~~~----q~e~akl~~~~aL~~~i~f~~~--~----~~~v~~~~~s~~~~d~~~~  557 (748)
T KOG4151|consen  488 YLAAKEKYERAKKIKPGGYEALLRLGQQ----QFEEAKLKWYHALAGKIDFPGE--R----SYEVVKPLDSALHNDEKGL  557 (748)
T ss_pred             HHhhhhHHhcCccccccHHHHHHHHHHH----hchHHHHHHHHHHhhhcCCCCC--c----hhhhhhhhcchhhhhHHHH
Confidence            3443445567778899999999999876    44566666666665 3332211  1    12345555555554321 2


Q ss_pred             HH--HHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChH-HHHH-cCchHHHhhcc
Q 008437          321 GA--ATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIP-NLLS-AGIISGLQSLA  395 (565)
Q Consensus       321 ~~--A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~-~iv~-~G~v~~Lv~Ll  395 (565)
                      ++  +..++.||+.. +..|..|...-+++.+-.++-.. ++..+..++..+.||...+..-. .+++ ...++.....+
T Consensus       558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~  636 (748)
T KOG4151|consen  558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNL  636 (748)
T ss_pred             HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHH
Confidence            22  78888889776 45566676554555555555556 78899999999999987765333 3334 33444444444


Q ss_pred             CCCChHHHHHHHHHHHHHhcCcccHHH-HhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHH
Q 008437          396 VPGDPMWTEKSLAVLLNLAASAAGKEE-MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPA  474 (565)
Q Consensus       396 ~~~~~~~~e~al~~L~nLa~~~~~r~~-i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~  474 (565)
                      ...+....-.+++++..+....++.-. +.+.-.....++.++.+.+..+|...+.+..++.....+....+.....++.
T Consensus       637 e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~  716 (748)
T KOG4151|consen  637 EVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMEL  716 (748)
T ss_pred             HhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHH
Confidence            444445555566666655554443333 4444467788888899999999999999888877766666666677677777


Q ss_pred             HHHhhhcCChhHHHHHHHHHHHH
Q 008437          475 LVSISVNGSTRGRDKAQRLLMLF  497 (565)
Q Consensus       475 Lv~L~~~~s~~~k~~A~~lL~~L  497 (565)
                      +..+....-...++.|..-|...
T Consensus       717 l~~~~~~~~a~~~~~~~~~l~~a  739 (748)
T KOG4151|consen  717 LSGLQKLNRAPKREDAAPCLSAA  739 (748)
T ss_pred             HHHHHHhhhhhhhhhhhhHHHHH
Confidence            76665554444555555555443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=95.95  E-value=0.36  Score=50.30  Aligned_cols=154  Identities=25%  Similarity=0.259  Sum_probs=105.1

Q ss_pred             CCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHH--HHHHHHHHHhcCCCCC
Q 008437          259 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDA  336 (565)
Q Consensus       259 G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~~~~  336 (565)
                      -.++.++.+|.+    .+..++..|+..|..+..           .-+++.|..+|...+..  ..|+-+|.        
T Consensus        43 ~~~~~~~~~l~~----~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg--------   99 (335)
T COG1413          43 EAADELLKLLED----EDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALG--------   99 (335)
T ss_pred             hhHHHHHHHHcC----CCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHH--------
Confidence            467888888887    567788888777555431           23578888999877543  33444332        


Q ss_pred             chhhccCCchHHHHHHhcC-CCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChH------------HH
Q 008437          337 KPIIGSSHAVPFLVELCKG-KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPM------------WT  403 (565)
Q Consensus       337 k~~I~~~g~i~~Lv~lL~~-~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~------------~~  403 (565)
                        .++...+++.|+++|.. . +..++..|..+|..+-..          .++..|+.++.+....            ++
T Consensus       100 --~~~~~~a~~~li~~l~~d~-~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r  166 (335)
T COG1413         100 --ELGDPEAVPPLVELLENDE-NEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVR  166 (335)
T ss_pred             --ccCChhHHHHHHHHHHcCC-cHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHH
Confidence              23445789999999995 6 888999999999887442          2477777766554321            22


Q ss_pred             HHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437          404 EKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN  459 (565)
Q Consensus       404 e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~  459 (565)
                      ..++..|..+           ..+..++.|...+...+..++..|+.+|..+....
T Consensus       167 ~~a~~~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         167 AAAAEALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             HHHHHHHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence            2233333222           23467888888998888899999999998887764

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=95.94  E-value=0.0061  Score=59.71  Aligned_cols=62  Identities=27%  Similarity=0.340  Sum_probs=44.7

Q ss_pred             cccccccccccCCceec-CCCcccchHHHHHHHhc-CCCCCCCCCCC----CCCCCCcccHHHHHHHH
Q 008437           72 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPKTQQK----LPHLCLTPNYCVKGLIA  133 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~-~~~~cP~t~~~----l~~~~l~pn~~l~~~i~  133 (565)
                      +++|||+......||+. .|||.|||..|+..+.. -...||+-+-+    +....+.+...++.-|+
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr  243 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIR  243 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHH
Confidence            48999999999999986 59999999999999864 23459985433    12234555545555553

>TIGR02270 conserved hypothetical protein

Probab=95.89  E-value=0.24  Score=53.28  Aligned_cols=116  Identities=17%  Similarity=0.086  Sum_probs=82.2

Q ss_pred             hHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH
Q 008437          307 IPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS  384 (565)
Q Consensus       307 i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~  384 (565)
                      +..|+..|...+.  +..++.+|.          .|...++.+.|+.+|.+. ++.++..++.++..           ..
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg----------~i~~~~a~~~L~~~L~~~-~p~vR~aal~al~~-----------r~  145 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALG----------WLGGRQAEPWLEPLLAAS-EPPGRAIGLAALGA-----------HR  145 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHh----------cCCchHHHHHHHHHhcCC-ChHHHHHHHHHHHh-----------hc
Confidence            6777777765532  222333332          234556778888888877 88888777766655           12


Q ss_pred             cCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008437          385 AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL  455 (565)
Q Consensus       385 ~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~L  455 (565)
                      ....+.|+.++++.++.+...|+.+|..|-.           ...++.|...+.+.++.++..|+..|..+
T Consensus       146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       146 HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA  205 (410)
T ss_pred             cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence            3356678888888888889999999887654           35677788888888999999999988654

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.87  E-value=0.22  Score=57.68  Aligned_cols=218  Identities=15%  Similarity=0.071  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHhhccCchhhHHH---HhcCchHHHHHHhcCCcHH-HHHHHHHH--HhcCCCCCchhhccCCchHHHHHHh
Q 008437          280 QEIGAMALFNLAVNNNRNKELM---LAAGVIPLLEKMISNSNSH-GAATALYL--NLSFLDDAKPIIGSSHAVPFLVELC  353 (565)
Q Consensus       280 q~~A~~aL~nLa~~~~~nk~~i---~~~G~i~~Lv~lL~s~~~~-~~A~aaL~--nLs~~~~~k~~I~~~g~i~~Lv~lL  353 (565)
                      |.+-+++|.-|+..-+-....+   ..-|++|-.+++|+++... ......++  -|+.++..+.-+...++-...+..|
T Consensus       484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL  563 (1387)
T KOG1517|consen  484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL  563 (1387)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence            3444555555554434444444   2459999999999987432 22444443  3677777777777665556666666


Q ss_pred             cCC--CCHHHHHHHHHHHHHhccCCC-ChHHHHHcCchHHHhhccCCC-ChHHHHHHHHHHHHHhcCcccHHHHhcCCCC
Q 008437          354 KGK--TEHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASAAGKEEMNSTPGL  429 (565)
Q Consensus       354 ~~~--~~~~~~~~Al~aL~nLs~~~~-nk~~iv~~G~v~~Lv~Ll~~~-~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~  429 (565)
                      ..+  .+++-+.-|+-+|..++.+-. ......+.+.|..-++.+.++ .+-++.-++-.|..|-.+-+...-.....++
T Consensus       564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A  643 (1387)
T KOG1517|consen  564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA  643 (1387)
T ss_pred             cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence            652  345667777778888876543 555666778888777877764 5667777777777777654333333333488


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHhhcCC----hHHHHHH-----------HhCCcHH----HHHHhhhcCChhHHHHH
Q 008437          430 VSGLATVLDTGELIEQEQAVSCLFLLCNGN----EKCCQMV-----------LQEGVIP----ALVSISVNGSTRGRDKA  490 (565)
Q Consensus       430 v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~----~~~~~~v-----------~~~G~v~----~Lv~L~~~~s~~~k~~A  490 (565)
                      ...|+.+|....++++..|+-+|..+-.+.    ++....+           .-|..+.    .|+.+...|++-++..-
T Consensus       644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev  723 (1387)
T KOG1517|consen  644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV  723 (1387)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence            999999999999999999999998877642    2222111           1233344    56777888999888776


Q ss_pred             HHHHHHH
Q 008437          491 QRLLMLF  497 (565)
Q Consensus       491 ~~lL~~L  497 (565)
                      +-.|..+
T Consensus       724 ~v~ls~~  730 (1387)
T KOG1517|consen  724 VVALSHF  730 (1387)
T ss_pred             HHHHHHH
Confidence            6666654

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=95.79  E-value=0.0065  Score=62.06  Aligned_cols=46  Identities=20%  Similarity=0.554  Sum_probs=39.2

Q ss_pred             Ccccccccccc-cCCc------------eecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437           71 EELRCPISLQL-MYDP------------VIIASGQTYERICIEKWLSDGHSTCPKTQQKL  117 (565)
Q Consensus        71 ~~f~CpI~~~~-m~dP------------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l  117 (565)
                      .+-.|-||++= |.-|            =-++|||.+--+|+.-|++. +.|||.|+.|+
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~  344 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV  344 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence            56789999965 5544            57899999999999999986 78999999884

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=95.76  E-value=1.3  Score=46.16  Aligned_cols=164  Identities=20%  Similarity=0.195  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.+...|.+. +..+|..|+..|..+           ...-.++.|+.+|..   +.+..++..++.+|..+-  +.
T Consensus        74 ~av~~l~~~l~d~-~~~vr~~a~~aLg~~-----------~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~--~~  136 (335)
T COG1413          74 EAVPLLRELLSDE-DPRVRDAAADALGEL-----------GDPEAVPPLVELLEN---DENEGVRAAAARALGKLG--DE  136 (335)
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHcc-----------CChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcC--ch
Confidence            4556667777766 677777777644333           224468888888874   267788888888888774  22


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHH-HhcCC----CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNSHGAATALYL-NLSFL----DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY  370 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~-nLs~~----~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~  370 (565)
                               .++..|+..+....... ++..+. .+...    -.....++....++.|..++... +..++..|..+|.
T Consensus       137 ---------~a~~~l~~~l~~~~~~~-a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~  205 (335)
T COG1413         137 ---------RALDPLLEALQDEDSGS-AAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDE-DADVRRAAASALG  205 (335)
T ss_pred             ---------hhhHHHHHHhccchhhh-hhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCc-hHHHHHHHHHHHH
Confidence                     12666777776544222 111110 00000    00012234456889999999988 7789999999999


Q ss_pred             HhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437          371 NLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA  415 (565)
Q Consensus       371 nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~  415 (565)
                      .+....        ..+++.+...+.+.+..++..++..|..+-.
T Consensus       206 ~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~  242 (335)
T COG1413         206 QLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGD  242 (335)
T ss_pred             Hhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence            887654        3455666667777778877888777776543

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=95.71  E-value=0.0038  Score=64.73  Aligned_cols=35  Identities=26%  Similarity=0.619  Sum_probs=31.3

Q ss_pred             CCcccccccccccCCceecCCCcccchHHHHHHHh
Q 008437           70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLS  104 (565)
Q Consensus        70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~  104 (565)
                      .+++.||||+..++||++++|||+.||.|-..-+.
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            47899999999999999999999999999775544

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.58  E-value=0.067  Score=51.35  Aligned_cols=145  Identities=17%  Similarity=0.147  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHhccCCCChHHHHHc----------------CchHHHhhc-cCC-----CChHHHHHHHHHHHHHhcC
Q 008437          359 HQCKLDALHALYNLSTIPSNIPNLLSA----------------GIISGLQSL-AVP-----GDPMWTEKSLAVLLNLAAS  416 (565)
Q Consensus       359 ~~~~~~Al~aL~nLs~~~~nk~~iv~~----------------G~v~~Lv~L-l~~-----~~~~~~e~al~~L~nLa~~  416 (565)
                      ......++..|.||+..++.+..+++.                .++..|+++ .+.     ....-....+.+|.|++..
T Consensus         9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~   88 (192)
T PF04063_consen    9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL   88 (192)
T ss_pred             cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence            345677888899998888777766542                366778884 341     2234457899999999999


Q ss_pred             cccHHHHhcCCCC---HHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHh---CCcHHHHHHhhhcC---ChhHH
Q 008437          417 AAGKEEMNSTPGL---VSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ---EGVIPALVSISVNG---STRGR  487 (565)
Q Consensus       417 ~~~r~~i~~~~g~---v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~---~G~v~~Lv~L~~~~---s~~~k  487 (565)
                      +++|.-+++...+   +..|+..+...+..-+.-++++|.|+|...... ..++.   .+++|.|+.-+.+.   ++.=.
T Consensus        89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaGpEe~d~ee~  167 (192)
T PF04063_consen   89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAGPEELDEEEM  167 (192)
T ss_pred             HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccCCCcCCHHHH
Confidence            9999999876433   455666666678888999999999999887654 44444   37788876544432   22222


Q ss_pred             HHHHHHHHHHHhhcccC
Q 008437          488 DKAQRLLMLFREQRQRD  504 (565)
Q Consensus       488 ~~A~~lL~~L~~~r~~~  504 (565)
                      ++--.-|+.|-..++|+
T Consensus       168 ~~lp~~LQ~L~~dK~RE  184 (192)
T PF04063_consen  168 EKLPPELQLLPPDKKRE  184 (192)
T ss_pred             HcCCHHHhhcCCCCccC
Confidence            22223444555555554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.25  E-value=0.014  Score=58.17  Aligned_cols=47  Identities=21%  Similarity=0.646  Sum_probs=37.9

Q ss_pred             cccccccccc--CCce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           73 LRCPISLQLM--YDPV-IIASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        73 f~CpI~~~~m--~dPV-~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      ..|-||+.=|  .|-+ ++||.|.|-+.||++|+..-...||+|+.++.+
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            5699998644  2444 789999999999999998656779999988754

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=95.24  E-value=1.8  Score=47.51  Aligned_cols=57  Identities=25%  Similarity=0.148  Sum_probs=40.0

Q ss_pred             CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          440 GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       440 ~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      .+..++..|+.+|...+-+-..   .+..+.+.-.|-..+.+.++.+|+.|.-+|+.|+.
T Consensus       499 EN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         499 ENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             hhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence            5667788888888665543321   12233444455667888899999999999999983

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.22  E-value=0.019  Score=42.53  Aligned_cols=45  Identities=22%  Similarity=0.362  Sum_probs=24.7

Q ss_pred             cccccccccccCCcee-cCCCcc--cchHHHHHH-HhcCCCCCCCCCCC
Q 008437           72 ELRCPISLQLMYDPVI-IASGQT--YERICIEKW-LSDGHSTCPKTQQK  116 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~-~~~g~t--y~r~~I~~~-~~~~~~~cP~t~~~  116 (565)
                      .+.||||...|+-||- ..|.|.  ||-...-+. ...+...||.|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            3789999999999994 457765  777544444 34456789999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.17  E-value=1.3  Score=48.50  Aligned_cols=276  Identities=18%  Similarity=0.155  Sum_probs=163.4

Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchh-hhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc
Q 008437          215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARV-FTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN  293 (565)
Q Consensus       215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~-~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~  293 (565)
                      ++.+-..+..|....+..+| .+++-+-.+.++-.--+. .+.-.++||.|-.-+..    .++..+..-+.-|..|- .
T Consensus       123 Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~----~n~~tR~flv~Wl~~Ld-s  196 (675)
T KOG0212|consen  123 FNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYV----INPMTRQFLVSWLYVLD-S  196 (675)
T ss_pred             hHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHh-c
Confidence            45555666666655344443 445555555443211111 23324444444444433    56777766666666552 1


Q ss_pred             CchhhHHHH-hcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhcc-CCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437          294 NNRNKELML-AAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHAL  369 (565)
Q Consensus       294 ~~~nk~~i~-~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~~~~~Al~aL  369 (565)
                      .+ ....+- -...++-|..+|.....  +..+-.+|.++-..=.++....+ ...++.|+.-+.+. ++..+..|+.-|
T Consensus       197 ~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi  274 (675)
T KOG0212|consen  197 VP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWI  274 (675)
T ss_pred             CC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC-cHHHHHHHHHHH
Confidence            22 222222 23567777778865532  22222223222110011111112 35778889888888 899999999999


Q ss_pred             HHhccCCCChHHHHHcCchHHHhhccCCCCh-HHHHHHH---HHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHH
Q 008437          370 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDP-MWTEKSL---AVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQ  445 (565)
Q Consensus       370 ~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~-~~~e~al---~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~  445 (565)
                      .....-.++.....-.|++..++..+.+.+. .+++.+.   ..|..++..+....+ ++-...+..|.+.+.......+
T Consensus       275 ~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tr  353 (675)
T KOG0212|consen  275 QEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETR  353 (675)
T ss_pred             HHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHH
Confidence            9988777766666668888999996655444 3444333   235556665555544 3433567778888888888888


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          446 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       446 e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      -.++.-+..|-..-++ .-.+.....++.|+.-+.+.++.+-..+-.+|..+...
T Consensus       354 i~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s  407 (675)
T KOG0212|consen  354 IAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS  407 (675)
T ss_pred             HHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence            8887776666655542 33444567888998888888888888888888877644

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.13  E-value=0.85  Score=51.70  Aligned_cols=139  Identities=14%  Similarity=0.095  Sum_probs=80.0

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhc
Q 008437          346 VPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS  425 (565)
Q Consensus       346 i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~  425 (565)
                      +..|-+.|.+. +...+=-|+..|..+...+.+...=-+    ..+++-+++.|..++..|+.++..|.. +.|...|+.
T Consensus       315 iniLgkFL~n~-d~NirYvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~mv~  388 (866)
T KOG1062|consen  315 INILGKFLLNR-DNNIRYVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVN-ESNVRVMVK  388 (866)
T ss_pred             HHHHHHHhcCC-ccceeeeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHHHH
Confidence            34444444444 444444455555544443332211111    134556778888999999999988876 445555543


Q ss_pred             CCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc-CChH--H----HHH-------HHhCCcHHHHHHhhhcCChhHHHHHH
Q 008437          426 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCN-GNEK--C----CQM-------VLQEGVIPALVSISVNGSTRGRDKAQ  491 (565)
Q Consensus       426 ~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~-~~~~--~----~~~-------v~~~G~v~~Lv~L~~~~s~~~k~~A~  491 (565)
                            .|+.+|...++..+...++-+..++. ..+.  +    .-.       ++...++..|+.|..++-+...+.+.
T Consensus       389 ------eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~  462 (866)
T KOG1062|consen  389 ------ELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAV  462 (866)
T ss_pred             ------HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHH
Confidence                  47888888888888888877776663 2211  1    111       12234677788888877555555555


Q ss_pred             HHHHH
Q 008437          492 RLLML  496 (565)
Q Consensus       492 ~lL~~  496 (565)
                      .-|+.
T Consensus       463 ~rLy~  467 (866)
T KOG1062|consen  463 LRLYL  467 (866)
T ss_pred             HHHHH
Confidence            44433

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.91  E-value=0.019  Score=55.85  Aligned_cols=51  Identities=12%  Similarity=0.184  Sum_probs=42.2

Q ss_pred             CCcccccccccccCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 008437           70 PEELRCPISLQLMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT  123 (565)
Q Consensus        70 p~~f~CpI~~~~m~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~  123 (565)
                      -..|+|||++-.|.+-.    +-+|||.|.-.++.+.-   ..+|++|++++...+.+
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI  163 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI  163 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence            36799999999999976    44899999988887665   45799999999887644

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=94.89  E-value=0.036  Score=41.52  Aligned_cols=55  Identities=18%  Similarity=0.073  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH
Q 008437          359 HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL  413 (565)
Q Consensus       359 ~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL  413 (565)
                      +.++..|+++|.+++........-....+++.|+.++.+++..++..|+.+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            3578999999999887665555556678999999988888889999999999875

...

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.88  E-value=4.2  Score=40.26  Aligned_cols=233  Identities=13%  Similarity=0.087  Sum_probs=143.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhh-ccCCHHHHHHHhccc--------ccCCCHHHHHHHHHHH
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG-ANGFVVALLRFLESA--------VCERNSYAQEIGAMAL  287 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s~--------~~s~~~~~q~~A~~aL  287 (565)
                      .+..++-.|.+   ++.+..|+.+|...-+..++.-..+- .-|.+..|++=.-+.        .......-.-+|+..|
T Consensus        27 k~~~~i~~l~~---~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~Ll  103 (293)
T KOG3036|consen   27 KAYQLILSLVS---PPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALL  103 (293)
T ss_pred             chhhHHHHhhC---CchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHH
Confidence            35566666653   45566677777666544444333333 356666665432211        0011122234566666


Q ss_pred             HHhhccCchhhHHHHhcCchHHHHHHhcCCc-------HHHHHHHHHHHhcCCCCCc--hhhccCCchHHHHHHhcCCCC
Q 008437          288 FNLAVNNNRNKELMLAAGVIPLLEKMISNSN-------SHGAATALYLNLSFLDDAK--PIIGSSHAVPFLVELCKGKTE  358 (565)
Q Consensus       288 ~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~-------~~~~A~aaL~nLs~~~~~k--~~I~~~g~i~~Lv~lL~~~~~  358 (565)
                      .-++ ++++.|..+.++..---|-.+|..+.       -+-.+.+++..|..+++.-  ..+...++||..++.++.| +
T Consensus       104 QcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G-S  181 (293)
T KOG3036|consen  104 QCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG-S  181 (293)
T ss_pred             HHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc-c
Confidence            6666 57899999999876555566665432       1344888888887765432  2334579999999999999 8


Q ss_pred             HHHHHHHHHHHHHhccCCCChHHHHH--------cCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCC
Q 008437          359 HQCKLDALHALYNLSTIPSNIPNLLS--------AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGL  429 (565)
Q Consensus       359 ~~~~~~Al~aL~nLs~~~~nk~~iv~--------~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~  429 (565)
                      ...+..|.-++..+-.++..-..+..        +-.+..++. +.+.++..+.+.++.+..+|+.++..|.++...   
T Consensus       182 elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~c---  258 (293)
T KOG3036|consen  182 ELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSC---  258 (293)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhh---
Confidence            88899999988888777764443332        123333444 566788999999999999999999888887532   


Q ss_pred             HHHHH-----HHhhcCCHHHHHHHHHHHHHhhc
Q 008437          430 VSGLA-----TVLDTGELIEQEQAVSCLFLLCN  457 (565)
Q Consensus       430 v~~Lv-----~lL~~~s~~~~e~Av~~L~~Lc~  457 (565)
                      +|..+     ..+-..++..+..-...|.+||.
T Consensus       259 lPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  259 LPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT  291 (293)
T ss_pred             CcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence            22211     12223455555555555555553

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.63  E-value=2  Score=48.55  Aligned_cols=281  Identities=9%  Similarity=0.065  Sum_probs=158.8

Q ss_pred             chhhHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437          213 NVFERYQDFLN-VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA  291 (565)
Q Consensus       213 ~~~e~i~~ll~-~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa  291 (565)
                      .+...+..+++ .+++. +|..+..|+.+...+..+.+..+..-...+++|.++.++.+    ...-++..++++|..++
T Consensus       360 ~Iv~~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D----~sl~VkdTaAwtlgrI~  434 (859)
T KOG1241|consen  360 DIVPHVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD----PSLWVKDTAAWTLGRIA  434 (859)
T ss_pred             cchhhhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC----chhhhcchHHHHHHHHH
Confidence            34456777776 77777 99999999999999997666666666668899999999986    55667788999999998


Q ss_pred             ccCchhhHHHH-hcCchHHHHHHhcC-CcHHHHHHHHHHHhcCC--CCCchh----hccCCchHHHH----HHhc--CCC
Q 008437          292 VNNNRNKELML-AAGVIPLLEKMISN-SNSHGAATALYLNLSFL--DDAKPI----IGSSHAVPFLV----ELCK--GKT  357 (565)
Q Consensus       292 ~~~~~nk~~i~-~~G~i~~Lv~lL~s-~~~~~~A~aaL~nLs~~--~~~k~~----I~~~g~i~~Lv----~lL~--~~~  357 (565)
                      .+..+....-. ....++.++.-|.. +....+++|++.+|+..  +.....    ... ...+.++    +.-+  ++.
T Consensus       435 d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgn  513 (859)
T KOG1241|consen  435 DFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGN  513 (859)
T ss_pred             hhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccc
Confidence            54432211111 12345555554443 34457799999999832  222222    221 2233333    3322  223


Q ss_pred             CHHHHHHHHHHHHHhccCCC-ChHHHHHcCchHHHhh---------ccCCCC----hHHHHHHHHHHHHHhc-CcccHHH
Q 008437          358 EHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQS---------LAVPGD----PMWTEKSLAVLLNLAA-SAAGKEE  422 (565)
Q Consensus       358 ~~~~~~~Al~aL~nLs~~~~-nk~~iv~~G~v~~Lv~---------Ll~~~~----~~~~e~al~~L~nLa~-~~~~r~~  422 (565)
                      ....+..|-.||..|..+.. ...-++. +.....+.         .+...+    ..++...+++|..+-. ....+..
T Consensus       514 qsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~  592 (859)
T KOG1241|consen  514 QSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIRE  592 (859)
T ss_pred             hhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchh
Confidence            45688889999998875443 3332222 11111111         221111    2334444455554433 2234444


Q ss_pred             HhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhh-hcCChhHHHHHHHHHHHHHh
Q 008437          423 MNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSIS-VNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       423 i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~-~~~s~~~k~~A~~lL~~L~~  499 (565)
                      +.+  .....+++++.+ .+..+.|.|..++..+...=. +..+.  -+...|-|..=+ ......+--.|+.+.--|.+
T Consensus       593 ~~d--~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ky--m~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~r  668 (859)
T KOG1241|consen  593 VSD--QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKY--MPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLAR  668 (859)
T ss_pred             HHH--HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            444  356677777776 566678887777776664322 22111  234455554433 33334444555566666655


Q ss_pred             hcccC
Q 008437          500 QRQRD  504 (565)
Q Consensus       500 ~r~~~  504 (565)
                      .-+.+
T Consensus       669 aL~~~  673 (859)
T KOG1241|consen  669 ALEDD  673 (859)
T ss_pred             HHHhh
Confidence            54444

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.62  E-value=0.4  Score=48.89  Aligned_cols=222  Identities=13%  Similarity=0.066  Sum_probs=144.1

Q ss_pred             CHHHHHHHHHHHHHhhccCchhhHHHH-hcCchHHHHHHhcCC--cH--HHHHHHHHHHhcCCCCCchhhcc-CCchHHH
Q 008437          276 NSYAQEIGAMALFNLAVNNNRNKELML-AAGVIPLLEKMISNS--NS--HGAATALYLNLSFLDDAKPIIGS-SHAVPFL  349 (565)
Q Consensus       276 ~~~~q~~A~~aL~nLa~~~~~nk~~i~-~~G~i~~Lv~lL~s~--~~--~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~L  349 (565)
                      +...+--|+.+|.+++. ..+.|..+- +.-.-..++.++++.  ..  +-+..-+++.|+...+..+.|-. ...|.-|
T Consensus       162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl  240 (432)
T COG5231         162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            44567778899999986 455555544 444667778888764  22  34577777778777665544444 3678888


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhccC--CCChHHHHHcCchHHHhh-ccCCC--ChHHHH---HHHHHHHH----HhcCc
Q 008437          350 VELCKGKTEHQCKLDALHALYNLSTI--PSNIPNLLSAGIISGLQS-LAVPG--DPMWTE---KSLAVLLN----LAASA  417 (565)
Q Consensus       350 v~lL~~~~~~~~~~~Al~aL~nLs~~--~~nk~~iv~~G~v~~Lv~-Ll~~~--~~~~~e---~al~~L~n----La~~~  417 (565)
                      +++.+......+.+-++.++.|++.-  .+....+.-.|-+.+-++ |++.+  +..++.   ..-..|.+    ||..+
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD  320 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            99988765667888999999999862  245555555665566666 44432  333221   11122211    22111


Q ss_pred             ------------------------ccHHHHh-cCCCCHHHHHHHhhcCCHH-HHHHHHHHHHHhhcCChHHHHHHHhCCc
Q 008437          418 ------------------------AGKEEMN-STPGLVSGLATVLDTGELI-EQEQAVSCLFLLCNGNEKCCQMVLQEGV  471 (565)
Q Consensus       418 ------------------------~~r~~i~-~~~g~v~~Lv~lL~~~s~~-~~e~Av~~L~~Lc~~~~~~~~~v~~~G~  471 (565)
                                              .+...+. +.-..+..|.+++....+. ...-|+.-+..+.+..++....+..-|+
T Consensus       321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~  400 (432)
T COG5231         321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV  400 (432)
T ss_pred             HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence                                    1222222 2223566777888765444 4556677777777777777888888899


Q ss_pred             HHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          472 IPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       472 v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      =..+++|+...++++|-.|..+++.+-
T Consensus       401 k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         401 KEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            999999999999999999999988754

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.61  E-value=0.52  Score=47.01  Aligned_cols=220  Identities=17%  Similarity=0.141  Sum_probs=136.2

Q ss_pred             CHHHHHHHHHHHHHhhccCchhhHHHHh-cCchHHHHHH-h------cCCc------H-HHHHHHHHHHhcCCCCCchhh
Q 008437          276 NSYAQEIGAMALFNLAVNNNRNKELMLA-AGVIPLLEKM-I------SNSN------S-HGAATALYLNLSFLDDAKPII  340 (565)
Q Consensus       276 ~~~~q~~A~~aL~nLa~~~~~nk~~i~~-~G~i~~Lv~l-L------~s~~------~-~~~A~aaL~nLs~~~~~k~~I  340 (565)
                      +++.++.|+.-|..--...++-.-.+-+ .|.+..|..= +      ..+.      . ..+|.+.|..++.+++.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            4567777755444322111222333444 3766665442 2      2221      1 244888888899999999999


Q ss_pred             ccCCchHHHHHHhcCCC----CHHHHHHHHHHHHHhccCC--CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437          341 GSSHAVPFLVELCKGKT----EHQCKLDALHALYNLSTIP--SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA  414 (565)
Q Consensus       341 ~~~g~i~~Lv~lL~~~~----~~~~~~~Al~aL~nLs~~~--~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa  414 (565)
                      .++...-.|.-.|....    -+-.+-.+++++..|...+  +....+.+.++||..++.++.|+...+..|.-++..+-
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            88877666666665431    2357888999999998744  45666778999999999888888888888999998888


Q ss_pred             cCcccHHHHhcCCC-------CHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHH-HH----Hhhhc
Q 008437          415 ASAAGKEEMNSTPG-------LVSGLATVL-DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPA-LV----SISVN  481 (565)
Q Consensus       415 ~~~~~r~~i~~~~g-------~v~~Lv~lL-~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~-Lv----~L~~~  481 (565)
                      .++.|-.-+..+..       ++..++.-| ...+++.-.+.+++-..|+.+.. .+.++.+  -+|. |-    .-...
T Consensus       168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr-ar~aL~~--~LP~~Lrd~~f~~~l~  244 (262)
T PF04078_consen  168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR-AREALRQ--CLPDQLRDGTFSNILK  244 (262)
T ss_dssp             HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT-HHHHHHH--HS-GGGTSSTTTTGGC
T ss_pred             cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH-HHHHHHH--hCcHHHhcHHHHHHHh
Confidence            87777665544322       333333332 34689999999999999999875 3443332  1222 11    12223


Q ss_pred             CChhHHHHHHHHHHHHH
Q 008437          482 GSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       482 ~s~~~k~~A~~lL~~L~  498 (565)
                      +++.+|+.-..++.++.
T Consensus       245 ~D~~~k~~l~qLl~nl~  261 (262)
T PF04078_consen  245 DDPSTKRWLQQLLSNLN  261 (262)
T ss_dssp             S-HHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            57777777777776653

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=94.55  E-value=0.2  Score=56.08  Aligned_cols=148  Identities=10%  Similarity=0.040  Sum_probs=96.7

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChH---HHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHH
Q 008437          345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIP---NLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE  421 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~---~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~  421 (565)
                      .+..++..|++. ++.++..|+..+..|+..-.++.   .+...|+|  |.+-+....+++.-..+++|..++..-..-.
T Consensus       800 i~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~k  876 (1172)
T KOG0213|consen  800 ICSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTK  876 (1172)
T ss_pred             HHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence            445666778888 89999999999998875444442   23334443  5556667788887777777777765332111


Q ss_pred             HHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHH
Q 008437          422 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM  495 (565)
Q Consensus       422 ~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~  495 (565)
                      ..--..+.+|.|.-+|++...+++++++..+..||.++++....-.=--+---|++++..-....|+.|...+-
T Consensus       877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG  950 (1172)
T KOG0213|consen  877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFG  950 (1172)
T ss_pred             cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            11112378999999999999999999999999999988653211000011123566666666667776655433

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.45  E-value=3.3  Score=48.12  Aligned_cols=221  Identities=14%  Similarity=0.065  Sum_probs=123.8

Q ss_pred             hhhccCCHHHHHHHhcccccC-CCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhc----CCc------HHHH
Q 008437          254 FTGANGFVVALLRFLESAVCE-RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMIS----NSN------SHGA  322 (565)
Q Consensus       254 ~i~~~G~i~~Lv~lL~s~~~s-~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~----s~~------~~~~  322 (565)
                      .|.+.|++..|+.+|.+-.+. .+.......+..|...+. -..||+.+.+.|+++.|++.|.    .+.      ..+.
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~  190 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ  190 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence            456789999999999764321 233444455555555554 5789999999999999999884    211      2233


Q ss_pred             HHHHHHHh---cCCCCCchhhc---c-------CCchHHHHHHhcCC---CCHHHHHHHHHHHHHhccCCCChHHHHHcC
Q 008437          323 ATALYLNL---SFLDDAKPIIG---S-------SHAVPFLVELCKGK---TEHQCKLDALHALYNLSTIPSNIPNLLSAG  386 (565)
Q Consensus       323 A~aaL~nL---s~~~~~k~~I~---~-------~g~i~~Lv~lL~~~---~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G  386 (565)
                      ...++..|   +..++......   .       ..-+..|++.+.+.   .++......+++|-+|+..++.+..++-.-
T Consensus       191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~  270 (802)
T PF13764_consen  191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH  270 (802)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence            33333332   22111111111   1       12356666666654   267888999999999997665544432211


Q ss_pred             chHHHhhc--cCCCChHHHHHHHHHHHHHhc----C---cccHHHHhcCCCCHHHHHHHhhcC--------CHHHH----
Q 008437          387 IISGLQSL--AVPGDPMWTEKSLAVLLNLAA----S---AAGKEEMNSTPGLVSGLATVLDTG--------ELIEQ----  445 (565)
Q Consensus       387 ~v~~Lv~L--l~~~~~~~~e~al~~L~nLa~----~---~~~r~~i~~~~g~v~~Lv~lL~~~--------s~~~~----  445 (565)
                      . .+.+++  ++.....--...+..+..++.    +   ..-|..|++. |.+...+++|...        +++-+    
T Consensus       271 F-~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~-GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~  348 (802)
T PF13764_consen  271 F-KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILES-GIVQDAIDYLLKHFPSLKNTDSPEWKEFLS  348 (802)
T ss_pred             H-HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-hHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence            1 222221  111100000122334444433    2   2456677776 8888888887642        33333    


Q ss_pred             ----HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHh
Q 008437          446 ----EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI  478 (565)
Q Consensus       446 ----e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L  478 (565)
                          ..++.+|.-||..... .+.++.+++++.|-.|
T Consensus       349 ~psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~L  384 (802)
T PF13764_consen  349 RPSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRL  384 (802)
T ss_pred             CCcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHh
Confidence                3567788888887653 4444666667666544

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.43  E-value=0.026  Score=58.61  Aligned_cols=43  Identities=19%  Similarity=0.500  Sum_probs=38.3

Q ss_pred             cccccccccccCC---ceecCCCcccchHHHHHHHhcCC--CCCCCCC
Q 008437           72 ELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGH--STCPKTQ  114 (565)
Q Consensus        72 ~f~CpI~~~~m~d---PV~~~~g~ty~r~~I~~~~~~~~--~~cP~t~  114 (565)
                      -|.|||..+-=.|   |+.+.|||..++.+|.+-...|.  ..||.|-
T Consensus       334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP  381 (394)
T KOG2817|consen  334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP  381 (394)
T ss_pred             eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence            3899999987766   88999999999999999999887  7799994

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.23  E-value=0.14  Score=48.61  Aligned_cols=78  Identities=24%  Similarity=0.297  Sum_probs=65.0

Q ss_pred             hHHHHHcCchHHHhhccCC---------CChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437          379 IPNLLSAGIISGLQSLAVP---------GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV  449 (565)
Q Consensus       379 k~~iv~~G~v~~Lv~Ll~~---------~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av  449 (565)
                      ...+++.||+..|+.++..         .+......++.+|..|..+..|...++.+++++..|+..|.+.+..++..|+
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l  179 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL  179 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence            4466778899998885521         3446778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 008437          450 SCLFLLC  456 (565)
Q Consensus       450 ~~L~~Lc  456 (565)
                      .+|..||
T Consensus       180 eiL~~lc  186 (187)
T PF06371_consen  180 EILAALC  186 (187)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999998

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.15  E-value=0.14  Score=45.11  Aligned_cols=77  Identities=12%  Similarity=0.194  Sum_probs=63.6

Q ss_pred             ccchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHh
Q 008437          211 GNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNL  290 (565)
Q Consensus       211 ~~~~~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nL  290 (565)
                      +.+.++.+..|++.|....++....-|+..|..+++..+..|..+.+.|+-..+..++.+    .|++++..|+.++..|
T Consensus        38 ~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h----~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   38 EENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH----EDPEVRYEALLAVQKL  113 (119)
T ss_dssp             SSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-----SSHHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC----CCHHHHHHHHHHHHHH
Confidence            334457888999999554477888889999999999999999999889999999999988    7999999999988876


Q ss_pred             h
Q 008437          291 A  291 (565)
Q Consensus       291 a  291 (565)
                      -
T Consensus       114 m  114 (119)
T PF11698_consen  114 M  114 (119)
T ss_dssp             H
T ss_pred             H
Confidence            4

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.00  E-value=0.91  Score=48.11  Aligned_cols=242  Identities=18%  Similarity=0.166  Sum_probs=131.2

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.+..++.-|..+.+...|+.++-.|..-+. +++.|..+...|.+..+++.+....  .+...--.++.++.-|+ .+.
T Consensus        21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~--~d~~~~l~~a~i~~~l~-~d~   96 (361)
T PF07814_consen   21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAP--DDDILALATAAILYVLS-RDG   96 (361)
T ss_pred             HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhcccc--chHHHHHHHHHHHHHHc-cCC
Confidence            4567788888865577889998888888874 6789999999999999999996531  22233333333344444 333


Q ss_pred             hhhHHHHhcCchHHHHHHhcC--C-cHHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcC--------CCCHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISN--S-NSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKG--------KTEHQCK  362 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s--~-~~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~--------~~~~~~~  362 (565)
                      .+-..+...+.+..++.+|..  . +.....-         ...+..+..  ...+..+.+++..        .....-+
T Consensus        97 ~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~---------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~  167 (361)
T PF07814_consen   97 LNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSD---------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQ  167 (361)
T ss_pred             cchhhhhchhHHHHHHHHhccccccccccchh---------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccc
Confidence            333343455667777888771  1 0000000         000000000  0111111111100        0012233


Q ss_pred             HHHHHHHHHhc---------------cCCCChHHHHHcCchHHHhhccC----C-------C-----ChHHHHHHHHHHH
Q 008437          363 LDALHALYNLS---------------TIPSNIPNLLSAGIISGLQSLAV----P-------G-----DPMWTEKSLAVLL  411 (565)
Q Consensus       363 ~~Al~aL~nLs---------------~~~~nk~~iv~~G~v~~Lv~Ll~----~-------~-----~~~~~e~al~~L~  411 (565)
                      --|+.+|-.++               ..+--|..+.+.|++..+++++.    .       .     +....+.++.+|.
T Consensus       168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE  247 (361)
T PF07814_consen  168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE  247 (361)
T ss_pred             cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence            44444444442               11124666777889999999542    1       0     1234577899999


Q ss_pred             HHhcC-cccHHHHhcCCC-CHHHHHH-Hhhc---CCHHHHHHHHHHHHHhhcCChHHHHHHHhCC
Q 008437          412 NLAAS-AAGKEEMNSTPG-LVSGLAT-VLDT---GELIEQEQAVSCLFLLCNGNEKCCQMVLQEG  470 (565)
Q Consensus       412 nLa~~-~~~r~~i~~~~g-~v~~Lv~-lL~~---~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G  470 (565)
                      +.+.. .++........+ .+..+.. ++..   ........++++|.||+.+++..+..+...+
T Consensus       248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~  312 (361)
T PF07814_consen  248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK  312 (361)
T ss_pred             HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence            88763 445555544422 2333333 3332   2233467889999999998866555555443

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.97  E-value=0.42  Score=52.97  Aligned_cols=168  Identities=14%  Similarity=0.130  Sum_probs=111.4

Q ss_pred             cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhc--------CchHHHHHHhcCCcH--HHHHHHHH
Q 008437          258 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA--------GVIPLLEKMISNSNS--HGAATALY  327 (565)
Q Consensus       258 ~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~--------G~i~~Lv~lL~s~~~--~~~A~aaL  327 (565)
                      ..++|.|..+|.+    ++...++-|..+|..++.+.    ..+.+.        =.+|.++.+.++++.  +..|++.+
T Consensus       127 pelLp~L~~~L~s----~d~n~~EgA~~AL~KIcEDs----a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cv  198 (885)
T KOG2023|consen  127 PELLPQLCELLDS----PDYNTCEGAFGALQKICEDS----AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCV  198 (885)
T ss_pred             hhHHHHHHHHhcC----CcccccchhHHHHHHHHhhh----HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhh
Confidence            5678999999987    67778899999999997422    112221        147888888888754  45566665


Q ss_pred             HHhcCCCCCchhhcc-CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHH
Q 008437          328 LNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKS  406 (565)
Q Consensus       328 ~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~a  406 (565)
                      -..-.. ..+..+.. ...++.|..+-.+. +++++++.+.+|..|......|..=-=.++|+-++....+.+..+.-+|
T Consensus       199 Nq~i~~-~~qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEA  276 (885)
T KOG2023|consen  199 NQFIII-QTQALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEA  276 (885)
T ss_pred             hheeec-CcHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHH
Confidence            332221 12222222 35677777777666 9999999999999987544333222224677778887777788888999


Q ss_pred             HHHHHHHhcCcccHHHHhcC-CCCHHHHHH
Q 008437          407 LAVLLNLAASAAGKEEMNST-PGLVSGLAT  435 (565)
Q Consensus       407 l~~L~nLa~~~~~r~~i~~~-~g~v~~Lv~  435 (565)
                      +.....+|..+--+..+..+ +..||.|++
T Consensus       277 CEFwla~aeqpi~~~~L~p~l~kliPvLl~  306 (885)
T KOG2023|consen  277 CEFWLALAEQPICKEVLQPYLDKLIPVLLS  306 (885)
T ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHHHHc
Confidence            99999999988555554332 134555554

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=93.85  E-value=0.12  Score=38.64  Aligned_cols=55  Identities=20%  Similarity=0.124  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437          442 LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF  497 (565)
Q Consensus       442 ~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L  497 (565)
                      +.+++.|+.+|.+++....+.... ....+++.|+.++.+.++.+|..|...|..|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468899999999988877654443 4457899999999999999999999988654

...

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.75  E-value=1.3  Score=46.24  Aligned_cols=200  Identities=14%  Similarity=0.068  Sum_probs=138.8

Q ss_pred             hhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhH-----HHHh--cCchHHHHHHhcCCcHHHHHHHHH
Q 008437          255 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE-----LMLA--AGVIPLLEKMISNSNSHGAATALY  327 (565)
Q Consensus       255 i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~-----~i~~--~G~i~~Lv~lL~s~~~~~~A~aaL  327 (565)
                      +...|.+..|+..|..    -+-+.+..++.+..++-.....++.     .+.+  ..++..|+.--..++..-.+-..|
T Consensus        72 i~~~dll~~Li~~L~~----L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~ml  147 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPK----LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDML  147 (335)
T ss_dssp             HHHHTHHHHHHHTGGG----S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhh----CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHH
Confidence            4556888888888876    6788888888888887654433432     2222  234555554445555555566677


Q ss_pred             HHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC-CCChHHHHHc---CchHHHhhccCCCChHHH
Q 008437          328 LNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSA---GIISGLQSLAVPGDPMWT  403 (565)
Q Consensus       328 ~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~-~~nk~~iv~~---G~v~~Lv~Ll~~~~~~~~  403 (565)
                      .....++.....|-.+..+..+.+.+..+ +-++..+|..++..|-.. .......+..   ..+.....|+.+++-.++
T Consensus       148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  148 RECIKHESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHHTTSHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHHhhHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            77777766666666677888899999988 899999999999987654 3344444443   345555558888999999


Q ss_pred             HHHHHHHHHHhcCcccHHHH---hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437          404 EKSLAVLLNLAASAAGKEEM---NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN  459 (565)
Q Consensus       404 e~al~~L~nLa~~~~~r~~i---~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~  459 (565)
                      ..++.+|..|-....+...|   +..+.-+..++.+|++.+..+|-.|..++--...++
T Consensus       227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            99999999999988887755   555567888888888999999999999886544433

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.70  E-value=0.67  Score=50.42  Aligned_cols=152  Identities=21%  Similarity=0.150  Sum_probs=111.8

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCCh----HHHHHHHHHHHHHhcCcccH
Q 008437          345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAASAAGK  420 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~----~~~e~al~~L~nLa~~~~~r  420 (565)
                      ....+.+++.++ +...+..|+..|..|+.+..-...++...++..|..++.+++.    .+...++.++..|-.+.---
T Consensus        84 ~a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   84 YAKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            446778888888 7788888999999999999999999999999999998877643    44455566665555433211


Q ss_pred             HHHhcCCCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          421 EEMNSTPGLVSGLATVLD--TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       421 ~~i~~~~g~v~~Lv~lL~--~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      -..+.. .+|...+.+..  ..+..+-..|+.+|-++..++....+.+.++--+..|+..+..++.+...+|..+|..|-
T Consensus       163 W~~~~~-~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  163 WESVSN-DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             eeeccc-HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            112222 34555555542  245567788999999988888767888889988999988888888889888888887754

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=93.46  E-value=2  Score=42.99  Aligned_cols=194  Identities=13%  Similarity=0.089  Sum_probs=124.1

Q ss_pred             CHHHHHHHHHHHHHHhccCccchhhhh-ccCCHHHHHHHhccccc---CC--CH---HHHHHHHHHHHHhhccCchhhHH
Q 008437          230 NLGQKCNIVEQIRLLLKDDEEARVFTG-ANGFVVALLRFLESAVC---ER--NS---YAQEIGAMALFNLAVNNNRNKEL  300 (565)
Q Consensus       230 ~~~~q~~Al~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s~~~---s~--~~---~~q~~A~~aL~nLa~~~~~nk~~  300 (565)
                      +++.|..|+.+|..--...++.--.+- .-|.+..|++=+-+--.   ..  +.   .-..+|+..|.-+|. +++.|..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            678888888777665433333333333 47888888764432110   01  11   122455566666774 7899999


Q ss_pred             HHhcCchHHHHHHhcCCcH-------HHHHHHHHHHhcCCCCC--chhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437          301 MLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN  371 (565)
Q Consensus       301 i~~~G~i~~Lv~lL~s~~~-------~~~A~aaL~nLs~~~~~--k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n  371 (565)
                      +.++...--|..+|...+.       +-.+.+++..|...++.  -..+...+.+|..++.++.| +.-.+..|.-++..
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqK  165 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQK  165 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHH
Confidence            9999988778888865421       23377788877765432  23334579999999999999 88888889988888


Q ss_pred             hccCCCChHHHH-------H-cCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhc
Q 008437          372 LSTIPSNIPNLL-------S-AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS  425 (565)
Q Consensus       372 Ls~~~~nk~~iv-------~-~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~  425 (565)
                      +-.++..-..+.       . ..++..++. +..+.++.+.+..+.+-..|+.++.+|.++..
T Consensus       166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            866554322222       1 234555555 56677899999999999999999999988754

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.34  E-value=4.3  Score=43.79  Aligned_cols=175  Identities=14%  Similarity=0.165  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHhhccCc---hhhHHHHhcCchHHHHHHhcCCc-------H--HHHHHHHHHHhcCCCCCchhhccCC
Q 008437          277 SYAQEIGAMALFNLAVNNN---RNKELMLAAGVIPLLEKMISNSN-------S--HGAATALYLNLSFLDDAKPIIGSSH  344 (565)
Q Consensus       277 ~~~q~~A~~aL~nLa~~~~---~nk~~i~~~G~i~~Lv~lL~s~~-------~--~~~A~aaL~nLs~~~~~k~~I~~~g  344 (565)
                      .+-|-.|+.....+.+.++   .||+.+.++=+++.+-++|.+++       .  ...++++|.-.+..++....----.
T Consensus        25 D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~  104 (698)
T KOG2611|consen   25 DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVS  104 (698)
T ss_pred             hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHH
Confidence            3445555555556655433   46888999988999999997532       1  2335666666665554321111124


Q ss_pred             chHHHHHHhcCCCCHH------HHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccC-CCChHHHHHHHHHHHHHhc--
Q 008437          345 AVPFLVELCKGKTEHQ------CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAA--  415 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~------~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~-~~~~~~~e~al~~L~nLa~--  415 (565)
                      .||.|..++..+.+++      ...++-.+|+.++..+.....++..|+++.+-++-. .+..--.+.++.+|..+..  
T Consensus       105 ~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~~  184 (698)
T KOG2611|consen  105 RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVSKL  184 (698)
T ss_pred             hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHhc
Confidence            7899999998764444      788999999999999999999999999999998422 2222222445555544443  


Q ss_pred             --CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008437          416 --SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFL  454 (565)
Q Consensus       416 --~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~  454 (565)
                        .++.-..+..   .|..+..=+...+...+-..+.+|..
T Consensus       185 ~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~  222 (698)
T KOG2611|consen  185 DCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSA  222 (698)
T ss_pred             ccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence              2333333322   23333333333344445555555543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.30  E-value=1.1  Score=49.83  Aligned_cols=219  Identities=15%  Similarity=0.063  Sum_probs=127.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc------chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE------ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA  291 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~------~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa  291 (565)
                      +...++.|+.. ..++|..|++.+.-+.+..+-      ....+. ..++..+...+.+    ....++..|+.+|..+.
T Consensus       236 Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D----~sl~VRV~AaK~lG~~~  309 (823)
T KOG2259|consen  236 YSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRD----RSLSVRVEAAKALGEFE  309 (823)
T ss_pred             HHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhc----CceeeeehHHHHhchHH
Confidence            56677777776 778888888887777654310      111111 1223333444433    34456666666666553


Q ss_pred             ccCchhhHHHHhcCchHHHHHHhcCCcH-HHHHHHHHHHh--cC------------CCCCchhhccCCchHHHHHHhcCC
Q 008437          292 VNNNRNKELMLAAGVIPLLEKMISNSNS-HGAATALYLNL--SF------------LDDAKPIIGSSHAVPFLVELCKGK  356 (565)
Q Consensus       292 ~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-~~~A~aaL~nL--s~------------~~~~k~~I~~~g~i~~Lv~lL~~~  356 (565)
                      .-+++    ++..-.=..+..-|+...+ .+.....+.+.  |.            .++....|..+|+-.++|.-|+++
T Consensus       310 ~vSee----~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE  385 (823)
T KOG2259|consen  310 QVSEE----IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE  385 (823)
T ss_pred             HhHHH----HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH
Confidence            21111    1110000111111111111 11122223222  10            122334566688888999999887


Q ss_pred             CCHHHHHHHHHHHHHhccCCC-ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHH
Q 008437          357 TEHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLAT  435 (565)
Q Consensus       357 ~~~~~~~~Al~aL~nLs~~~~-nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~  435 (565)
                       -.+++++|...++.|+.+.. -...     ++.-|++++++....++..|+.+|..++.+-.-++.      -++.+..
T Consensus       386 -f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~ee------ql~~il~  453 (823)
T KOG2259|consen  386 -FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREE------QLRQILE  453 (823)
T ss_pred             -HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHH------HHHHHHH
Confidence             77899999999999987543 3222     567799999888889999999999999887444443      3456777


Q ss_pred             HhhcCCHHHHHHHHHHHHHhhcCC
Q 008437          436 VLDTGELIEQEQAVSCLFLLCNGN  459 (565)
Q Consensus       436 lL~~~s~~~~e~Av~~L~~Lc~~~  459 (565)
                      .|...++.+++..-..|.+ |+-+
T Consensus       454 ~L~D~s~dvRe~l~elL~~-~~~~  476 (823)
T KOG2259|consen  454 SLEDRSVDVREALRELLKN-ARVS  476 (823)
T ss_pred             HHHhcCHHHHHHHHHHHHh-cCCC
Confidence            7888888888866665543 4443

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=93.13  E-value=0.027  Score=44.86  Aligned_cols=47  Identities=23%  Similarity=0.712  Sum_probs=23.0

Q ss_pred             cccccccccccC-C---ceec----CCCcccchHHHHHHHhc--CC--------CCCCCCCCCCC
Q 008437           72 ELRCPISLQLMY-D---PVII----ASGQTYERICIEKWLSD--GH--------STCPKTQQKLP  118 (565)
Q Consensus        72 ~f~CpI~~~~m~-d---PV~~----~~g~ty~r~~I~~~~~~--~~--------~~cP~t~~~l~  118 (565)
                      +..|+||...+. +   |+++    .||++|=..|+.+||..  +.        .+||.|+++++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            567999997654 2   5554    48999999999999973  21        24999988764

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.02  E-value=5.3  Score=45.49  Aligned_cols=70  Identities=19%  Similarity=0.205  Sum_probs=46.1

Q ss_pred             cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcC
Q 008437          258 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF  332 (565)
Q Consensus       258 ~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~  332 (565)
                      ..+...+..+|.++..+....+.-.|+.++.+|..   .+-..+.-  ++..|--+|+++..  +-.|..+|-.++.
T Consensus       240 ~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~---~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm  311 (865)
T KOG1078|consen  240 QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPN---TNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAM  311 (865)
T ss_pred             ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccc---cCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            44566677777766555677788888888888853   23333322  67778788888754  4457777766664

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.02  E-value=0.022  Score=55.93  Aligned_cols=53  Identities=21%  Similarity=0.458  Sum_probs=42.1

Q ss_pred             CcccccccccccCCce----------ecCCCcccchHHHHHHHhcC-CCCCCCCCCCCCCCCCc
Q 008437           71 EELRCPISLQLMYDPV----------IIASGQTYERICIEKWLSDG-HSTCPKTQQKLPHLCLT  123 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV----------~~~~g~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~  123 (565)
                      ++=.|-||++-+.+-|          .++|+|.|---||.-|.--| .+|||.|++.++...+.
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf  286 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF  286 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence            4567999998877776          67999999999999997644 68999998876543333

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.00  E-value=2.2  Score=48.27  Aligned_cols=275  Identities=13%  Similarity=0.131  Sum_probs=160.6

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhc--
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV--  292 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~--  292 (565)
                      +.+..++.....+....++..++++|..++.+- +-...... +.++-.++.-...  ...+..++..|..+|.|--.  
T Consensus       129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk--~e~s~~vRLaa~~aL~nsLef~  205 (859)
T KOG1241|consen  129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRK--EETSAAVRLAALNALYNSLEFT  205 (859)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccc--cCCchhHHHHHHHHHHHHHHHH
Confidence            345566666666534458889999999998542 22233323 5556666654443  22567788889998887321  


Q ss_pred             ----cCchhhHHHHhcCchHHHHHHhcCCcHH--HHHHHHHHHhcCC-CC-CchhhccCCchHHHHHHhcCCCCHHHHHH
Q 008437          293 ----NNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFL-DD-AKPIIGSSHAVPFLVELCKGKTEHQCKLD  364 (565)
Q Consensus       293 ----~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~-~~-~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~  364 (565)
                          .++.+|..|     +...++.-.+++.+  ..|...|..+... .+ ....+. ...+..-+.-+++. +.++...
T Consensus       206 ~~nF~~E~ern~i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~-~alfaitl~amks~-~deValQ  278 (859)
T KOG1241|consen  206 KANFNNEMERNYI-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYME-QALFAITLAAMKSD-NDEVALQ  278 (859)
T ss_pred             HHhhccHhhhcee-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHH
Confidence                122223332     33344444555443  3345555544332 11 112222 12223333445666 7777777


Q ss_pred             HHHHHHHhccCC-----------------CChHHHHH--cCchHHHhhcc-CCC------ChHHHHHHHHHHHHHhcCcc
Q 008437          365 ALHALYNLSTIP-----------------SNIPNLLS--AGIISGLQSLA-VPG------DPMWTEKSLAVLLNLAASAA  418 (565)
Q Consensus       365 Al~aL~nLs~~~-----------------~nk~~iv~--~G~v~~Lv~Ll-~~~------~~~~~e~al~~L~nLa~~~~  418 (565)
                      ++.-=.++|..+                 .++..+..  .+++|.|+++| +.+      +-.....|-..|..++.+- 
T Consensus       279 aiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~-  357 (859)
T KOG1241|consen  279 AIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV-  357 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-
Confidence            777666666311                 11222222  37888899954 311      1222344444444444321 


Q ss_pred             cHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          419 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       419 ~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                       ...|+.+  +++-+=+-+.+.+-+.++.|+.++..+-.+....+..-+..+++|.++.++.+.+--+|+-+++.|-.+.
T Consensus       358 -~D~Iv~~--Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~  434 (859)
T KOG1241|consen  358 -GDDIVPH--VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIA  434 (859)
T ss_pred             -cccchhh--hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHH
Confidence             1234443  4444444666778889999999999988877766666677789999999999989999999999999988


Q ss_pred             hhcccC
Q 008437          499 EQRQRD  504 (565)
Q Consensus       499 ~~r~~~  504 (565)
                      +.-...
T Consensus       435 d~l~e~  440 (859)
T KOG1241|consen  435 DFLPEA  440 (859)
T ss_pred             hhchhh
Confidence            775533

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.92  E-value=0.71  Score=51.26  Aligned_cols=211  Identities=11%  Similarity=0.074  Sum_probs=117.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc-----
Q 008437          221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN-----  295 (565)
Q Consensus       221 ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~-----  295 (565)
                      +....... +..++..|++.|-.|.. .-..-     .-.....+..+++    .+..++..|++++.-.+...+     
T Consensus       203 l~~~~~~~-D~~Vrt~A~eglL~L~e-g~kL~-----~~~Y~~A~~~lsD----~~e~VR~aAvqlv~v~gn~~p~~~e~  271 (823)
T KOG2259|consen  203 LIYLEHDQ-DFRVRTHAVEGLLALSE-GFKLS-----KACYSRAVKHLSD----DYEDVRKAAVQLVSVWGNRCPAPLER  271 (823)
T ss_pred             HHHHhcCC-CcchHHHHHHHHHhhcc-ccccc-----HHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            33333444 78888889988888764 21111     1124566777776    567788888777665542211     


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC-----CCHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-----TEHQCKLDALHA  368 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~-----~~~~~~~~Al~a  368 (565)
                      ++-..=....++..+.+.+...+  .+..|+.+|..+-...        .   +.|-+.|+..     -........-..
T Consensus       272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS--------e---e~i~QTLdKKlms~lRRkr~ahkrpk~  340 (823)
T KOG2259|consen  272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS--------E---EIIQQTLDKKLMSRLRRKRTAHKRPKA  340 (823)
T ss_pred             hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH--------H---HHHHHHHHHHHhhhhhhhhhcccchHH
Confidence            11111111235566666665543  2333444443221110        0   1111111110     000111111112


Q ss_pred             HH-Hh--c------------cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHH
Q 008437          369 LY-NL--S------------TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGL  433 (565)
Q Consensus       369 L~-nL--s------------~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~L  433 (565)
                      |+ +.  +            ..++.-..++..|+--++|.=+.+.-.++++.|+..|..|+.+..+-.   .  .++.-|
T Consensus       341 l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA---~--~aldfL  415 (823)
T KOG2259|consen  341 LYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA---V--RALDFL  415 (823)
T ss_pred             HHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH---H--HHHHHH
Confidence            22 22  0            012234457788888889986666677899999999999998543322   1  357788


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHhhcC
Q 008437          434 ATVLDTGELIEQEQAVSCLFLLCNG  458 (565)
Q Consensus       434 v~lL~~~s~~~~e~Av~~L~~Lc~~  458 (565)
                      +.++.+.-..++..|+-+|..|+.+
T Consensus       416 vDMfNDE~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  416 VDMFNDEIEVVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHH
Confidence            9999888899999999999988865

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=92.84  E-value=2.8  Score=48.08  Aligned_cols=68  Identities=19%  Similarity=0.224  Sum_probs=44.1

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437          345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA  415 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~  415 (565)
                      +++++.+++.++ ++.+++.|+-|+..|=.-  .+....+.|.+..+..|+.+.++.+...|+.+|..+..
T Consensus       128 ~~~~ik~~l~d~-~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         128 IIDPIKKLLTDP-HAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHHHHHHHccCC-cHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            556677777766 677777777777666432  23444556666666666666677777777777766654

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.84  E-value=0.077  Score=54.76  Aligned_cols=56  Identities=30%  Similarity=0.443  Sum_probs=49.8

Q ss_pred             CCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437           68 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN  125 (565)
Q Consensus        68 ~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn  125 (565)
                      .+| ...|.+++..|.|||-+..|..||-..|-.|+.. +.+=|.|++++...+|++-
T Consensus        37 rLP-~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL   92 (518)
T KOG0883|consen   37 RLP-FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKL   92 (518)
T ss_pred             cCC-hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceee
Confidence            345 5679999999999999999999999999999996 6788999999998888774

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=92.79  E-value=6.1  Score=42.65  Aligned_cols=193  Identities=19%  Similarity=0.122  Sum_probs=112.4

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHh-cccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFL-ESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL-~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      +.+..++....+..++..+..+++.+..++..-...-   .-..++..+...+ ...........-+..+|+...|...+
T Consensus       189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~  265 (415)
T PF12460_consen  189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG  265 (415)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence            4566777776666578888889999988885411100   0012223333322 11111112223333344444443322


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCC-CCC--------chhhcc----CCchHHHHHHhcCCCCHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFL-DDA--------KPIIGS----SHAVPFLVELCKGKTEHQC  361 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~-~~~--------k~~I~~----~g~i~~Lv~lL~~~~~~~~  361 (565)
                      +..-     ...+..|+.+|.++.....|+..+.-|..+ ++.        -..+..    ...+|.|++-.+.. +...
T Consensus       266 ~~~~-----~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~  339 (415)
T PF12460_consen  266 HPLA-----TELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEI  339 (415)
T ss_pred             CchH-----HHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-Chhh
Confidence            2111     124677888888866566666666666554 321        111111    24678888888776 5568


Q ss_pred             HHHHHHHHHHhccCCCChHHHHH-cCchHHHhhccCCCChHHHHHHHHHHHHHhcCc
Q 008437          362 KLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA  417 (565)
Q Consensus       362 ~~~Al~aL~nLs~~~~nk~~iv~-~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~  417 (565)
                      +.+-+.||.+|..+-.....+-+ ...+|.|++-+.-.+..++..++.+|..+....
T Consensus       340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            88899999999875553333333 458888888666677888999999999888755

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=92.70  E-value=0.055  Score=56.94  Aligned_cols=43  Identities=23%  Similarity=0.571  Sum_probs=35.8

Q ss_pred             cccccccccccCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437           72 ELRCPISLQLMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKL  117 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l  117 (565)
                      -=+||+|++=|.+-|    ++.|.|+|--.|+.+|+..   +||+|+--.
T Consensus       175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q  221 (493)
T KOG0804|consen  175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQ  221 (493)
T ss_pred             CCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhc
Confidence            348999999999887    4579999999999999864   688887443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.67  E-value=0.062  Score=55.91  Aligned_cols=60  Identities=27%  Similarity=0.559  Sum_probs=45.7

Q ss_pred             ccccccccccCCce-----ecCCCcccchHHHHHHHhc-CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 008437           73 LRCPISLQLMYDPV-----IIASGQTYERICIEKWLSD-GHSTCPKTQQKLPHLCLTPNYCVKGLI  132 (565)
Q Consensus        73 f~CpI~~~~m~dPV-----~~~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~~~~l~pn~~l~~~i  132 (565)
                      -+||||++-..=|+     ++.|||-|--.||++|+.+ -...||.|...-...++.|-+.+|...
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa   70 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA   70 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence            47999998887776     5679999999999999952 134599997665556677766665543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.67  E-value=1.1  Score=50.64  Aligned_cols=240  Identities=17%  Similarity=0.151  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      .-++.+++..... +.+.+.-.-.-|.+.++..++.        ++..+-.++.+ ..++++.++..|++.+.-+-.  +
T Consensus        49 slF~dvvk~~~T~-dlelKKlvyLYl~nYa~~~P~~--------a~~avnt~~kD-~~d~np~iR~lAlrtm~~l~v--~  116 (734)
T KOG1061|consen   49 SLFPDVVKCMQTR-DLELKKLVYLYLMNYAKGKPDL--------AILAVNTFLKD-CEDPNPLIRALALRTMGCLRV--D  116 (734)
T ss_pred             hhhHHHHhhcccC-CchHHHHHHHHHHHhhccCchH--------HHhhhhhhhcc-CCCCCHHHHHHHhhceeeEee--h
Confidence            5667788888776 6666655555666666554421        12222233333 344788888888777766542  2


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI  375 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~  375 (565)
                      .....     .+.+|.+.++....-....+++.--...+.........|.++.|-.++.+. ++.+..+|+.+|..+...
T Consensus       117 ~i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  117 KITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHES  190 (734)
T ss_pred             HHHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHh
Confidence            12222     366788888877654443333333334455566777789999999999977 899999999999999865


Q ss_pred             CCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhc---Ccc-cHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437          376 PSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAA---SAA-GKEEMNSTPGLVSGLATVLDTGELIEQEQAVS  450 (565)
Q Consensus       376 ~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~---~~~-~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~  450 (565)
                      +.+...   ....+.++. ++...+......-+.+|.+|+.   .+. ....      .+..+...|......+.-.++.
T Consensus       191 ~~~~~~---~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~------i~~r~~p~Lqh~n~avvlsavK  261 (734)
T KOG1061|consen  191 HPSVNL---LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAED------ICERLTPRLQHANSAVVLSAVK  261 (734)
T ss_pred             CCCCCc---ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHH------HHHHhhhhhccCCcceEeehHH
Confidence            543100   112222222 2222222222233344444443   222 1112      2333444455555556666666


Q ss_pred             HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCC
Q 008437          451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGS  483 (565)
Q Consensus       451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s  483 (565)
                      +++.+...-.. .....-..+.++|+.++....
T Consensus       262 v~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~  293 (734)
T KOG1061|consen  262 VILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES  293 (734)
T ss_pred             HHHHHHHHHHH-HHHHHHHHhcccceeeecccc
Confidence            66665543332 122222344455555554443

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.34  E-value=0.46  Score=45.66  Aligned_cols=83  Identities=14%  Similarity=0.053  Sum_probs=63.8

Q ss_pred             CchHHHHHHhcCC-----CCHHHHHHHHHHHHHhccCCCChHHHHHc--Cc--hHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437          344 HAVPFLVELCKGK-----TEHQCKLDALHALYNLSTIPSNIPNLLSA--GI--ISGLQSLAVPGDPMWTEKSLAVLLNLA  414 (565)
Q Consensus       344 g~i~~Lv~lL~~~-----~~~~~~~~Al~aL~nLs~~~~nk~~iv~~--G~--v~~Lv~Ll~~~~~~~~e~al~~L~nLa  414 (565)
                      ..+..|++++-.|     ....-....+.+|.||+..++.|..+++.  +.  +..|+.++...+..-+.-++++|.|+|
T Consensus        52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc  131 (192)
T PF04063_consen   52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC  131 (192)
T ss_pred             HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence            4566666666542     13345678889999999999999999873  44  777777776667777788999999999


Q ss_pred             cCcccHHHHhcC
Q 008437          415 ASAAGKEEMNST  426 (565)
Q Consensus       415 ~~~~~r~~i~~~  426 (565)
                      ...+....+...
T Consensus       132 Fd~~~H~~LL~~  143 (192)
T PF04063_consen  132 FDTDSHEWLLSD  143 (192)
T ss_pred             ccHhHHHHhcCc
Confidence            998888877764

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.32  E-value=2  Score=48.57  Aligned_cols=70  Identities=16%  Similarity=0.137  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      .+..+...|.+. ++.+|..|+-.+.++-.   .........|+++.|-.++.+    .++.+..+|+.+|..+...+
T Consensus       122 ~~~Pl~~~l~d~-~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D----~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  122 LCDPLLKCLKDD-DPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSD----SNPMVVANALAALSEIHESH  191 (734)
T ss_pred             HHHHHHHhccCC-ChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcC----CCchHHHHHHHHHHHHHHhC
Confidence            456788888887 89999888888877743   345566779999999999986    68899999999999986443

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=92.28  E-value=0.42  Score=46.97  Aligned_cols=87  Identities=21%  Similarity=0.259  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHhcCcccHHHHhcCCC------CHHHHHHHhh-cCCHHHHHHHHHHHHHhhcCChHHH-HHHHhCCcH
Q 008437          401 MWTEKSLAVLLNLAASAAGKEEMNSTPG------LVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCC-QMVLQEGVI  472 (565)
Q Consensus       401 ~~~e~al~~L~nLa~~~~~r~~i~~~~g------~v~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~-~~v~~~G~v  472 (565)
                      .-+..|+.+|..|+-.+.|..-++.++.      .+..|+++|. ++++..+|.|+.+|.+||..++..+ ....+.+.|
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            4468999999999999999998877632      3444555554 3688999999999999999988665 455577999


Q ss_pred             HHHHHhhhcCChhHH
Q 008437          473 PALVSISVNGSTRGR  487 (565)
Q Consensus       473 ~~Lv~L~~~~s~~~k  487 (565)
                      ..|+..+......++
T Consensus       219 ~~Li~FiE~a~~~~~  233 (257)
T PF12031_consen  219 SHLIAFIEDAEQNAH  233 (257)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998876654443

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.23  E-value=17  Score=41.19  Aligned_cols=70  Identities=16%  Similarity=0.112  Sum_probs=34.9

Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhh-cCChhHHHHHHHHHHHHHhhc
Q 008437          429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~-~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      ++..|.++|.......+--|+..+..||.... ....+...  ...++..+. ..+..+|++|..+|..|.+..
T Consensus       330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~  400 (938)
T KOG1077|consen  330 AVNQLGQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS  400 (938)
T ss_pred             HHHHHHHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence            34444444444444445555555544444322 11222221  333444444 566677788888887776543

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.17  E-value=3.6  Score=48.80  Aligned_cols=212  Identities=16%  Similarity=0.185  Sum_probs=110.8

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhhHHHHhc--CchHHHHHHhcCCc--HHHHHHHHHHHhcCC--CCCchhhccCCchHH
Q 008437          275 RNSYAQEIGAMALFNLAVNNNRNKELMLAA--GVIPLLEKMISNSN--SHGAATALYLNLSFL--DDAKPIIGSSHAVPF  348 (565)
Q Consensus       275 ~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~--G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~--~~~k~~I~~~g~i~~  348 (565)
                      .+..+|..+..+|..++.. +.......+.  .+...|...+++..  .+..+..+|..|-..  .+....+.  ..|+-
T Consensus       666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~E  742 (1176)
T KOG1248|consen  666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIPE  742 (1176)
T ss_pred             ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHH
Confidence            4678999999999888753 3222222211  12233333333322  122233333332211  12222222  24444


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcC------chHHHhhccCCC---C-hHHHHHHHHHHHHHhcCcc
Q 008437          349 LVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAG------IISGLQSLAVPG---D-PMWTEKSLAVLLNLAASAA  418 (565)
Q Consensus       349 Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G------~v~~Lv~Ll~~~---~-~~~~e~al~~L~nLa~~~~  418 (565)
                      ++=.++.. +...++.|..+|+.++.    .....+.|      +|...+.++..+   + .......+-++..+..   
T Consensus       743 vIL~~Ke~-n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---  814 (1176)
T KOG1248|consen  743 VILSLKEV-NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---  814 (1176)
T ss_pred             HHHhcccc-cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---
Confidence            44445555 88899999999999872    11111122      333333322221   1 1211111233333332   


Q ss_pred             cHHHHhcC---CCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHH
Q 008437          419 GKEEMNST---PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM  495 (565)
Q Consensus       419 ~r~~i~~~---~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~  495 (565)
                      ....+++.   .+.+..+.-.|...++.+...|++.+-.++..-++.+-.-..+-++|.+..++.+.+...|.+...+|.
T Consensus       815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle  894 (1176)
T KOG1248|consen  815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE  894 (1176)
T ss_pred             HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            11222222   134444555566789999999999999888766543333333457888888888888888888777766


Q ss_pred             HH
Q 008437          496 LF  497 (565)
Q Consensus       496 ~L  497 (565)
                      .|
T Consensus       895 kL  896 (1176)
T KOG1248|consen  895 KL  896 (1176)
T ss_pred             HH
Confidence            54

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=92.14  E-value=0.29  Score=53.77  Aligned_cols=151  Identities=13%  Similarity=0.092  Sum_probs=98.7

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChH---HHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHH
Q 008437          345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIP---NLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE  421 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~---~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~  421 (565)
                      .+..++.+|++. .+.++..|+.....|+..-.++.   .+...|.|  |.+-+....+++.-..+.++..+.+...-+.
T Consensus       605 ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence            556777888988 88899999988887764333222   23334443  5555566677777777777776665433222


Q ss_pred             HHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          422 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       422 ~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      .---..|.+|.|.-+|++...++.++.+..+..||.++++....-.=--+---|++++.+-+...|+.|...+-.++
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is  758 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS  758 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence            11112388999999999999999999999999999988753211000011223566777777888888876554433

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.99  E-value=17  Score=41.68  Aligned_cols=253  Identities=12%  Similarity=0.092  Sum_probs=131.2

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch------
Q 008437          223 NVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR------  296 (565)
Q Consensus       223 ~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~------  296 (565)
                      .-|.+. +.-++.-|+.+|.+++.  ++....+     .|.+.++|.+    .++-++..|+.++..+-.-.++      
T Consensus       114 nDL~s~-nq~vVglAL~alg~i~s--~Emardl-----apeVe~Ll~~----~~~~irKKA~Lca~r~irK~P~l~e~f~  181 (866)
T KOG1062|consen  114 NDLNSS-NQYVVGLALCALGNICS--PEMARDL-----APEVERLLQH----RDPYIRKKAALCAVRFIRKVPDLVEHFV  181 (866)
T ss_pred             hhccCC-CeeehHHHHHHhhccCC--HHHhHHh-----hHHHHHHHhC----CCHHHHHHHHHHHHHHHHcCchHHHHhh
Confidence            444554 66666777777777762  3332222     4555566665    5677777777666554322221      


Q ss_pred             --hhHHHHh--cC----chHHHHHHhcCCc-H-------HHHHHHHHHHhcCCCCCchhhccCC----c----hHHHHHH
Q 008437          297 --NKELMLA--AG----VIPLLEKMISNSN-S-------HGAATALYLNLSFLDDAKPIIGSSH----A----VPFLVEL  352 (565)
Q Consensus       297 --nk~~i~~--~G----~i~~Lv~lL~s~~-~-------~~~A~aaL~nLs~~~~~k~~I~~~g----~----i~~Lv~l  352 (565)
                        .+..+.+  .|    ++..+.+++..+. .       ...-+.+|.++....-..+.=. .|    +    |-.|+++
T Consensus       182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv-~gi~dPFLQi~iLrlLri  260 (866)
T KOG1062|consen  182 IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDV-HGISDPFLQIRILRLLRI  260 (866)
T ss_pred             HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCc-cCCCchHHHHHHHHHHHH
Confidence              2333332  24    3455555554321 1       1224556666654321111110 11    1    1234556


Q ss_pred             hcCCCCHHHHHHHHHHHHHhccCCC---ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcC---
Q 008437          353 CKGKTEHQCKLDALHALYNLSTIPS---NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST---  426 (565)
Q Consensus       353 L~~~~~~~~~~~Al~aL~nLs~~~~---nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~---  426 (565)
                      |..+ +.++.+.-..+|..++.+-+   |...++=-.+|..+..+.  .+..+++.|+.+|...-.+.++-...+.-   
T Consensus       261 LGq~-d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn~L  337 (866)
T KOG1062|consen  261 LGQN-DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALNML  337 (866)
T ss_pred             hcCC-CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehhhH
Confidence            6677 77777777777877775433   555554444555555553  34456677777777666544433222111   


Q ss_pred             -------CCC----HHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHH-HHHHH
Q 008437          427 -------PGL----VSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDK-AQRLL  494 (565)
Q Consensus       427 -------~g~----v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~-A~~lL  494 (565)
                             +.+    =..+++.|++.+..++..|+..++.|...+-  ...+     +..|+..+...++..|.. |.++.
T Consensus       338 ~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N--v~~m-----v~eLl~fL~~~d~~~k~~~as~I~  410 (866)
T KOG1062|consen  338 LRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN--VRVM-----VKELLEFLESSDEDFKADIASKIA  410 (866)
T ss_pred             HhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HHHH-----HHHHHHHHHhccHHHHHHHHHHHH
Confidence                   000    1245566777777788888887777776442  2222     344566666666666643 33444


Q ss_pred             HHHH
Q 008437          495 MLFR  498 (565)
Q Consensus       495 ~~L~  498 (565)
                      ..-.
T Consensus       411 ~laE  414 (866)
T KOG1062|consen  411 ELAE  414 (866)
T ss_pred             HHHH
Confidence            4333

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=91.92  E-value=0.15  Score=49.27  Aligned_cols=60  Identities=23%  Similarity=0.296  Sum_probs=45.3

Q ss_pred             cccccccccccCCceec-CCCcccchHHHHHHHh-cCCCCCCC--CCCCCCCCCCcccHHHHHH
Q 008437           72 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLS-DGHSTCPK--TQQKLPHLCLTPNYCVKGL  131 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~-~~~~~cP~--t~~~l~~~~l~pn~~l~~~  131 (565)
                      +.+|||+.+...-|++. .|.|-|||..|.+.+. +....||.  |.+.+.-..++-++.|.+.
T Consensus       189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R  252 (275)
T COG5627         189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKR  252 (275)
T ss_pred             cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHH
Confidence            36899999999999865 5999999999999997 23455887  6666665666655555443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=91.66  E-value=4.1  Score=41.76  Aligned_cols=221  Identities=14%  Similarity=0.126  Sum_probs=135.7

Q ss_pred             CHHHHHHHHHHHHHHhccCccchhhh-hccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHh-cCch
Q 008437          230 NLGQKCNIVEQIRLLLKDDEEARVFT-GANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA-AGVI  307 (565)
Q Consensus       230 ~~~~q~~Al~~L~~La~~~~~~r~~i-~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~-~G~i  307 (565)
                      +.-.+.-|+..+.+++- ..+.|..+ ++.-.-..++.+|++..  ++.++|-+.+.+++-|+. +....+.|-+ .+.|
T Consensus       162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~v--g~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli  237 (432)
T COG5231         162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYV--GVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLI  237 (432)
T ss_pred             HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            44567777788888773 44555544 34556677788887644  567899999999999985 3444433332 2567


Q ss_pred             HHHHHHhcCCcH---HHHHHHHHHHhcCCCCCchhhc---cCCchHHHHHHhcCC--CCHHHHHHHHHH-----------
Q 008437          308 PLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIG---SSHAVPFLVELCKGK--TEHQCKLDALHA-----------  368 (565)
Q Consensus       308 ~~Lv~lL~s~~~---~~~A~aaL~nLs~~~~~k~~I~---~~g~i~~Lv~lL~~~--~~~~~~~~Al~a-----------  368 (565)
                      ..|+.+.+....   -..+++++.|+.. ..-|..|.   -.|-+.+-|++|..+  .+.+.+.+.-.+           
T Consensus       238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         238 NDLIAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence            777777765422   1337888888754 22233333   245566667777543  233322221110           


Q ss_pred             ------HHHh-------cc-------CCCChHHHHHc--CchHHHhhccCCCChH-HHHHHHHHHHHHhc-CcccHHHHh
Q 008437          369 ------LYNL-------ST-------IPSNIPNLLSA--GIISGLQSLAVPGDPM-WTEKSLAVLLNLAA-SAAGKEEMN  424 (565)
Q Consensus       369 ------L~nL-------s~-------~~~nk~~iv~~--G~v~~Lv~Ll~~~~~~-~~e~al~~L~nLa~-~~~~r~~i~  424 (565)
                            +..|       |.       ...|..++.+.  .++..|.+++...++. +...|+.=|..+.. .++++..+.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~  396 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS  396 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence                  1111       10       12366666653  4778888877655443 33445554554444 678887777


Q ss_pred             cCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 008437          425 STPGLVSGLATVLDTGELIEQEQAVSCLFLLC  456 (565)
Q Consensus       425 ~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc  456 (565)
                      .. |+=+.++.++...+++++-.|+.++..+-
T Consensus       397 Ky-g~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         397 KY-GVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             Hh-hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            75 99999999999999999999999987653

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=91.64  E-value=0.12  Score=51.69  Aligned_cols=46  Identities=22%  Similarity=0.486  Sum_probs=37.2

Q ss_pred             cccccc-cccCCcee----cCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           74 RCPISL-QLMYDPVI----IASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        74 ~CpI~~-~~m~dPV~----~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      .||+|. .....|=+    -+|||+.|-+|...-|..|...||.|+..|..
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk   52 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK   52 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence            388887 55555542    27999999999999999999999999987653

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=91.62  E-value=0.71  Score=39.23  Aligned_cols=68  Identities=16%  Similarity=0.200  Sum_probs=54.9

Q ss_pred             CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHH--hCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          428 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVL--QEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~--~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      ..++.++..+.+.+.+++..|+.+|++|+....   ..++  -..++..|..+..+.++.+|..|.-+-++|.
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR---GEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence            478888888889999999999999999997543   2333  2467888899999999999988877777664

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.47  E-value=20  Score=40.69  Aligned_cols=79  Identities=16%  Similarity=0.201  Sum_probs=60.9

Q ss_pred             CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 008437          376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFL  454 (565)
Q Consensus       376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~  454 (565)
                      ++....+++  ++..|-+++.+.+..++-.++..+..|++++....++..|   ...++..|.+ .+-.++..|+..|+.
T Consensus       321 D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLkterDvSirrravDLLY~  395 (938)
T KOG1077|consen  321 DSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLKTERDVSIRRRAVDLLYA  395 (938)
T ss_pred             CCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhccccchHHHHHHHHHHHH
Confidence            334444443  5666777777777888899999999999988777777765   6777888874 577899999999999


Q ss_pred             hhcCC
Q 008437          455 LCNGN  459 (565)
Q Consensus       455 Lc~~~  459 (565)
                      +|..+
T Consensus       396 mcD~~  400 (938)
T KOG1077|consen  396 MCDVS  400 (938)
T ss_pred             Hhchh
Confidence            99765

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=90.85  E-value=0.56  Score=46.15  Aligned_cols=81  Identities=23%  Similarity=0.278  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhccCCCChHHHHHcC-------chHHHhhcc-CCCChHHHHHHHHHHHHHhcCcccHH-HHhcCCCCH
Q 008437          360 QCKLDALHALYNLSTIPSNIPNLLSAG-------IISGLQSLA-VPGDPMWTEKSLAVLLNLAASAAGKE-EMNSTPGLV  430 (565)
Q Consensus       360 ~~~~~Al~aL~nLs~~~~nk~~iv~~G-------~v~~Lv~Ll-~~~~~~~~e~al~~L~nLa~~~~~r~-~i~~~~g~v  430 (565)
                      .-+..|+.+|+.||..+.|...++..+       .+..|++++ ..++...+|-|+.+|.+||..++... .+....++|
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            357899999999999999988887654       344555533 45788899999999999999776555 455556999


Q ss_pred             HHHHHHhhcC
Q 008437          431 SGLATVLDTG  440 (565)
Q Consensus       431 ~~Lv~lL~~~  440 (565)
                      ..|+.+++..
T Consensus       219 ~~Li~FiE~a  228 (257)
T PF12031_consen  219 SHLIAFIEDA  228 (257)
T ss_pred             HHHHHHHHHH
Confidence            9999999753

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=90.76  E-value=0.28  Score=36.12  Aligned_cols=40  Identities=25%  Similarity=0.648  Sum_probs=31.0

Q ss_pred             cccccc--ccCCceecCCC-----cccchHHHHHHHhc-CCCCCCCCC
Q 008437           75 CPISLQ--LMYDPVIIASG-----QTYERICIEKWLSD-GHSTCPKTQ  114 (565)
Q Consensus        75 CpI~~~--~m~dPV~~~~g-----~ty~r~~I~~~~~~-~~~~cP~t~  114 (565)
                      |-||++  --.+|.+.||.     +-+=+.|+++|+.. +..+||+|+
T Consensus         2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            677775  45678888875     56889999999975 467899985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=90.75  E-value=0.9  Score=38.58  Aligned_cols=91  Identities=13%  Similarity=0.030  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcC-CCCHHHHHHHhhcC
Q 008437          362 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-PGLVSGLATVLDTG  440 (565)
Q Consensus       362 ~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~-~g~v~~Lv~lL~~~  440 (565)
                      ++.++.+|...+..-.....-.-.-++++++..+.+.+..++..|+.+|.|++...  +..++.+ ......|.+++.+.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADP   80 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCC
Confidence            45566777776643333322222458888999888999999999999999998754  3444332 25666777777777


Q ss_pred             CHHHHHHHHHHHHHh
Q 008437          441 ELIEQEQAVSCLFLL  455 (565)
Q Consensus       441 s~~~~e~Av~~L~~L  455 (565)
                      ++.++..| ..|-+|
T Consensus        81 d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   81 DENVRSAA-ELLDRL   94 (97)
T ss_pred             chhHHHHH-HHHHHH
Confidence            77776655 555444

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=90.67  E-value=1.2  Score=44.75  Aligned_cols=84  Identities=10%  Similarity=0.042  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHH
Q 008437          233 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEK  312 (565)
Q Consensus       233 ~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~  312 (565)
                      ....|+..|.-++--++..|..+.....+..|+.+|...   ..+.+|..++.+|..+-..++.|.+.+.+.+|+..++.
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~---~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~  183 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS---NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS  183 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC---CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence            355677888888878889999999999999999999542   56889999999999888888999999999999999999


Q ss_pred             HhcCCcH
Q 008437          313 MISNSNS  319 (565)
Q Consensus       313 lL~s~~~  319 (565)
                      ++++..+
T Consensus       184 llk~~~~  190 (257)
T PF08045_consen  184 LLKSKST  190 (257)
T ss_pred             HHccccc
Confidence            9987643

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=90.63  E-value=19  Score=42.56  Aligned_cols=247  Identities=16%  Similarity=0.138  Sum_probs=131.2

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.+..|+..|++. +..++..|++.+..++...+   ..++ ..+|...+.++.-.   ++...=..|+.+|..||... 
T Consensus       341 ~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp---~~La-d~vi~svid~~~p~---e~~~aWHgacLaLAELA~rG-  411 (1133)
T KOG1943|consen  341 FVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP---PELA-DQVIGSVIDLFNPA---EDDSAWHGACLALAELALRG-  411 (1133)
T ss_pred             HHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc---HHHH-HHHHHHHHHhcCcC---CchhHHHHHHHHHHHHHhcC-
Confidence            3445566677776 88999999999999998776   2222 33466666655432   33455567788888877421 


Q ss_pred             hhhHHHH-hcCchHHHHHHhcC---------C-cHHHHHHHHHHHhcCCCCC---chhhccCCchH-HHHHHhcCCCCHH
Q 008437          296 RNKELML-AAGVIPLLEKMISN---------S-NSHGAATALYLNLSFLDDA---KPIIGSSHAVP-FLVELCKGKTEHQ  360 (565)
Q Consensus       296 ~nk~~i~-~~G~i~~Lv~lL~s---------~-~~~~~A~aaL~nLs~~~~~---k~~I~~~g~i~-~Lv~lL~~~~~~~  360 (565)
                        -...- =..++|.++.-|.-         | ..+..|+-+.+.++...+-   +..+  ....+ .|...+-+. +..
T Consensus       412 --lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l--~~L~s~LL~~AlFDr-evn  486 (1133)
T KOG1943|consen  412 --LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL--QSLASALLIVALFDR-EVN  486 (1133)
T ss_pred             --CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH--HHHHHHHHHHHhcCc-hhh
Confidence              11110 12467777766632         2 2345566666666543221   1111  01111 222334455 678


Q ss_pred             HHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHH-HHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc
Q 008437          361 CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSL-AVLLNLAASAAGKEEMNSTPGLVSGLATVLDT  439 (565)
Q Consensus       361 ~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al-~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~  439 (565)
                      ++.+|..||.....-..|...     +++.+. ..+--....+.+|- .+=.-++..+..++-++++     .+.+-+..
T Consensus       487 cRRAAsAAlqE~VGR~~n~p~-----Gi~Lis-~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~H  555 (1133)
T KOG1943|consen  487 CRRAASAALQENVGRQGNFPH-----GISLIS-TIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCH  555 (1133)
T ss_pred             HhHHHHHHHHHHhccCCCCCC-----chhhhh-hcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhccccc
Confidence            999999999888765444421     111111 11000011111211 1112233333333333332     11111223


Q ss_pred             CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHH
Q 008437          440 GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQ  491 (565)
Q Consensus       440 ~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~  491 (565)
                      =+...+|.|+.+|..|+...++    -...+++|.|++-....+...+.-+.
T Consensus       556 Wd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~  603 (1133)
T KOG1943|consen  556 WDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVF  603 (1133)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhH
Confidence            4889999999999998876653    44567888888766666555554433

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.19  E-value=0.18  Score=50.80  Aligned_cols=43  Identities=23%  Similarity=0.510  Sum_probs=36.8

Q ss_pred             cccccccccccCC---ceecCCCcccchHHHHHHHhcCC--CCCCCCC
Q 008437           72 ELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGH--STCPKTQ  114 (565)
Q Consensus        72 ~f~CpI~~~~m~d---PV~~~~g~ty~r~~I~~~~~~~~--~~cP~t~  114 (565)
                      -|+||+..+.-.|   ||.++|||...+.++..--+.|.  ..||.|-
T Consensus       336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP  383 (396)
T COG5109         336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP  383 (396)
T ss_pred             eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence            4899999988776   89999999999999998877774  5699984

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=90.11  E-value=5  Score=46.13  Aligned_cols=67  Identities=12%  Similarity=0.108  Sum_probs=32.9

Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      .+..+.+.+...++.++..|+-++..+-+-+..   .+.++|.+..+..|+.+.++.+..+|...|..+.
T Consensus       128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELVADSDPIVIANALASLAEID  194 (757)
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence            344444455555555555555555555444432   3334455555555555555555555555544443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=89.92  E-value=7.8  Score=45.14  Aligned_cols=223  Identities=15%  Similarity=0.111  Sum_probs=122.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHH----HHHHhhc
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAM----ALFNLAV  292 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~----aL~nLa~  292 (565)
                      .+..+++.|... +.++|.-|++.|.-|++.-.+.+        ++.++.-|-+..-++....+..+.-    .+.|+.-
T Consensus        48 vv~~lLklL~D~-ngEVQnlAVKClg~lvsKvke~~--------le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P  118 (1233)
T KOG1824|consen   48 VVKMLLKLLEDK-NGEVQNLAVKCLGPLVSKVKEDQ--------LETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP  118 (1233)
T ss_pred             HHHHHHHHHhcc-CcHHHHHHHHHHHHHHhhchHHH--------HHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC
Confidence            456778888877 89999999999999986543333        3334433322111122222222222    2333431


Q ss_pred             cCchhhHHHHhcCchHHHHHHhcCCcH--------HHHHHHHHHHh-cCCCCCchhhc--cCCchHHHHHHhcCCCCHHH
Q 008437          293 NNNRNKELMLAAGVIPLLEKMISNSNS--------HGAATALYLNL-SFLDDAKPIIG--SSHAVPFLVELCKGKTEHQC  361 (565)
Q Consensus       293 ~~~~nk~~i~~~G~i~~Lv~lL~s~~~--------~~~A~aaL~nL-s~~~~~k~~I~--~~g~i~~Lv~lL~~~~~~~~  361 (565)
                      +    ........+++.+...|.....        +..++-++..+ +..   -..+.  ..+.+..++.-|.+. ...+
T Consensus       119 ~----~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~---g~ll~~fh~~il~~l~~ql~s~-R~aV  190 (1233)
T KOG1824|consen  119 S----SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF---GTLLPNFHLSILKCLLPQLQSP-RLAV  190 (1233)
T ss_pred             c----cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh---cccCcchHHHHHHHHhhcccCh-HHHH
Confidence            1    1111223344455444443211        11122222111 100   01111  134455555556666 6778


Q ss_pred             HHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh---
Q 008437          362 KLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL---  437 (565)
Q Consensus       362 ~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL---  437 (565)
                      ++.|+.+|..|+..-.   ..+-.++++.|++ |-....+........+|..+|.....|--- ..+..++.++++.   
T Consensus       191 rKkai~~l~~la~~~~---~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~-h~~~ivp~v~~y~~~~  266 (1233)
T KOG1824|consen  191 RKKAITALGHLASSCN---RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGS-HLDKIVPLVADYCNKI  266 (1233)
T ss_pred             HHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhc-ccchhhHHHHHHhccc
Confidence            9999999999986432   2233457778888 655556666666667777777644333221 2235778888887   


Q ss_pred             hcCCHHHHHHHHHHHHHhhcCCh
Q 008437          438 DTGELIEQEQAVSCLFLLCNGNE  460 (565)
Q Consensus       438 ~~~s~~~~e~Av~~L~~Lc~~~~  460 (565)
                      ...+++.+|.++.+|..+-.+.+
T Consensus       267 e~~dDELrE~~lQale~fl~rcp  289 (1233)
T KOG1824|consen  267 EEDDDELREYCLQALESFLRRCP  289 (1233)
T ss_pred             ccCcHHHHHHHHHHHHHHHHhCh
Confidence            55788999999999877665443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.74  E-value=6.9  Score=44.46  Aligned_cols=212  Identities=16%  Similarity=0.138  Sum_probs=98.4

Q ss_pred             CHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhccccc-------------CCCHHHHHHHHHHHHHhhccCch
Q 008437          230 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC-------------ERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       230 ~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~-------------s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      +...|..-++.|+..+..++.-+     .-.|..+..+|.+..+             +.++.+...|+.++..|.....+
T Consensus       219 ~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd  293 (948)
T KOG1058|consen  219 NDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD  293 (948)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC
Confidence            45667777777777775544333     2346677777765311             12455555555555555443333


Q ss_pred             hhHHHHhcCchHHHHHHhcCCc---HHHHHHHHHHHhcCCC-CCc-h------hhccCCchHHHHHHhcCC---------
Q 008437          297 NKELMLAAGVIPLLEKMISNSN---SHGAATALYLNLSFLD-DAK-P------IIGSSHAVPFLVELCKGK---------  356 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~---~~~~A~aaL~nLs~~~-~~k-~------~I~~~g~i~~Lv~lL~~~---------  356 (565)
                      |...++-   +..|..+ +..+   -++.++-+|.-|+.-+ +.+ .      -+..+.-+..++.+|+..         
T Consensus       294 nnvklIv---ldrl~~l-~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~  369 (948)
T KOG1058|consen  294 NNVKLIV---LDRLSEL-KALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEES  369 (948)
T ss_pred             cchhhhh---HHHHHHH-hhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccccc
Confidence            3222111   1111111 1110   1222444444443321 111 0      112234445555555411         


Q ss_pred             -CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHH
Q 008437          357 -TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLA  434 (565)
Q Consensus       357 -~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv  434 (565)
                       .+.+-+..-+++|...+..-.    =+.+.+|+.|++.+.+.++......+..+..... .+.-|..|++      .|+
T Consensus       370 d~~~~yRqlLiktih~cav~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~------~l~  439 (948)
T KOG1058|consen  370 DDNGKYRQLLIKTIHACAVKFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE------KLL  439 (948)
T ss_pred             ccchHHHHHHHHHHHHHhhcCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH------HHH
Confidence             122345555666666554221    1234577888886655555433333333332211 3334444433      233


Q ss_pred             HHhhc-CCHHHHHHHHHHHHHhhcCCh
Q 008437          435 TVLDT-GELIEQEQAVSCLFLLCNGNE  460 (565)
Q Consensus       435 ~lL~~-~s~~~~e~Av~~L~~Lc~~~~  460 (565)
                      +-+.. .+.+.-+.|+|++..-|....
T Consensus       440 ~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  440 ETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             HhhhhhcccccchhHHHHHHHHHhhhH
Confidence            33332 466777888999888776554

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=89.64  E-value=4.7  Score=45.51  Aligned_cols=177  Identities=18%  Similarity=0.175  Sum_probs=113.7

Q ss_pred             chHHHHHHhcCCcHHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH
Q 008437          306 VIPLLEKMISNSNSHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS  384 (565)
Q Consensus       306 ~i~~Lv~lL~s~~~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~  384 (565)
                      .+|.|..+++.....+.-+.++.++... +.....-....++|.|..-+++. +..+++.++..+-.++..-+  ...++
T Consensus       350 ~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD--~~~vk  426 (700)
T KOG2137|consen  350 MLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID--VPFVK  426 (700)
T ss_pred             hhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc--HHHHH
Confidence            4566666665433333333333333211 11111112235667777777777 89999999999998886544  55666


Q ss_pred             cCchHHHhhc-cCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHH
Q 008437          385 AGIISGLQSL-AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCC  463 (565)
Q Consensus       385 ~G~v~~Lv~L-l~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~  463 (565)
                      .-++|.|-.+ +...+..++-.++.+|..|.. .-.+..+++.   +..+.+-+...++...-..+.+..++......- 
T Consensus       427 ~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-~lD~~~v~d~---~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-  501 (700)
T KOG2137|consen  427 QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-RLDKAAVLDE---LLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-  501 (700)
T ss_pred             HHHHHHhhcchhcccchHHHHHHHHHHHHHHH-HHHHHHhHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-
Confidence            7788888884 566778888899999998882 3334444432   444555555678888888888887776544321 


Q ss_pred             HHHHhCCcHHHHHHhhhcCChhHHHHH
Q 008437          464 QMVLQEGVIPALVSISVNGSTRGRDKA  490 (565)
Q Consensus       464 ~~v~~~G~v~~Lv~L~~~~s~~~k~~A  490 (565)
                      +.++.+.++|.++-|...+.-.....+
T Consensus       502 ~ev~~~~VlPlli~ls~~~~L~~~Qy~  528 (700)
T KOG2137|consen  502 VEVMAENVLPLLIPLSVAPSLNGEQYN  528 (700)
T ss_pred             eeeehhhhhhhhhhhhhcccccHHHHH
Confidence            567778999999998888765544443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=89.63  E-value=3.1  Score=40.58  Aligned_cols=177  Identities=15%  Similarity=0.187  Sum_probs=112.1

Q ss_pred             HHHHHHHHHhcCCCCCchhhccCCchHHHHHHh---cC-CCCHHHHHHHHHHHHHhccCCC--ChHHHHHcCchHHHhhc
Q 008437          321 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELC---KG-KTEHQCKLDALHALYNLSTIPS--NIPNLLSAGIISGLQSL  394 (565)
Q Consensus       321 ~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL---~~-~~~~~~~~~Al~aL~nLs~~~~--nk~~iv~~G~v~~Lv~L  394 (565)
                      -+|..+|.-++.+++.|..+.+..+--.|...|   .+ ..-.-.+..++++|..|..+++  ....+....+||.++++
T Consensus       118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            446777777888888887777654332333333   22 2233467778888888887664  55667778999999999


Q ss_pred             cCCCChHHHHHHHHHHHHHhcCcccHHHHhcC-------CCCHHHHHHH-hhcCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 008437          395 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-------PGLVSGLATV-LDTGELIEQEQAVSCLFLLCNGNEKCCQMV  466 (565)
Q Consensus       395 l~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~-------~g~v~~Lv~l-L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v  466 (565)
                      ++.++...+..|+-++..+-.++.|-.-+..+       ..++..++.- ...++.+...+++++-..||.... .++.+
T Consensus       198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~-aR~lL  276 (315)
T COG5209         198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH-ARALL  276 (315)
T ss_pred             HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh-HHHHH
Confidence            98887777777888887777766665544222       1233334433 344788899999999999998765 33333


Q ss_pred             Hh---CCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          467 LQ---EGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       467 ~~---~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      ..   +|....-..+.-.++...|++-+.+|-.++
T Consensus       277 ~~~lP~~Lrd~tfs~vl~dD~~sk~ClAqll~~ln  311 (315)
T COG5209         277 SSKLPDGLRDDTFSLVLADDGGSKECLAQLLTFLN  311 (315)
T ss_pred             hccCCccccccHHHHHHHhcCChHHHHHHHHHHHH
Confidence            22   355444333333344445666666665554

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=89.62  E-value=12  Score=38.66  Aligned_cols=189  Identities=18%  Similarity=0.184  Sum_probs=101.3

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc--cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN  293 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~  293 (565)
                      +.+...+..|... ....|..++..|..+...... -..+..  .-.+..+.+.++.    +..+-+..|+.++.-|++.
T Consensus        43 ~~L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkk----g~~~E~~lA~~~l~Ll~lt  116 (309)
T PF05004_consen   43 DKLKEAIDLLTEK-SSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKK----GKSEEQALAARALALLALT  116 (309)
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHhhh
Confidence            4567778888776 788999999999999865432 122221  3345666666665    3334455565554444433


Q ss_pred             --CchhhHHHHhcCchHHHHHHhcCCcH----HHHHHHHHHH---hcCCCCCchhhcc-CCchHHH--HHHhcCC-----
Q 008437          294 --NNRNKELMLAAGVIPLLEKMISNSNS----HGAATALYLN---LSFLDDAKPIIGS-SHAVPFL--VELCKGK-----  356 (565)
Q Consensus       294 --~~~nk~~i~~~G~i~~Lv~lL~s~~~----~~~A~aaL~n---Ls~~~~~k~~I~~-~g~i~~L--v~lL~~~-----  356 (565)
                        .......+.+ ...|.|..++..+..    +..++.+|..   +...+.  ..+.+ ...+..+  ...++.+     
T Consensus       117 lg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~--~~~~~~~~~le~if~~~~~~~~~~~~~  193 (309)
T PF05004_consen  117 LGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE--EETEELMESLESIFLLSILKSDGNAPV  193 (309)
T ss_pred             cCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHHHhcCcCCCccc
Confidence              2233444443 467888888876532    2222223322   222211  11110 0122211  1122221     


Q ss_pred             ----CCHHHHHHHHHHHHHhccC-CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH
Q 008437          357 ----TEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL  413 (565)
Q Consensus       357 ----~~~~~~~~Al~aL~nLs~~-~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL  413 (565)
                          .++.+...|+.+-.-|... +.....-.-...++.|+.+|.+.+..++-.|-.+|+.|
T Consensus       194 ~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll  255 (309)
T PF05004_consen  194 VAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL  255 (309)
T ss_pred             ccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence                1245666676665555433 22222222245789999999988888887776666655

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=89.01  E-value=0.095  Score=58.53  Aligned_cols=46  Identities=20%  Similarity=0.447  Sum_probs=33.1

Q ss_pred             ccccccccccCCceec---CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           73 LRCPISLQLMYDPVII---ASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        73 f~CpI~~~~m~dPV~~---~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      -.||+|..-+.|-.+.   .|+|.||.+||..|-.- ..|||+|+..|..
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence            4577777777776643   48888888888888764 5688888877654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=88.77  E-value=8.3  Score=39.94  Aligned_cols=156  Identities=17%  Similarity=0.143  Sum_probs=84.8

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHhccC---CCChHHHHHcCchHHHhhccCCCC--hHHHHHHHHHHHHHhcC-cc
Q 008437          345 AVPFLVELCKGKTEHQCKLDALHALYNLSTI---PSNIPNLLSAGIISGLQSLAVPGD--PMWTEKSLAVLLNLAAS-AA  418 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~---~~nk~~iv~~G~v~~Lv~Ll~~~~--~~~~e~al~~L~nLa~~-~~  418 (565)
                      .+..+.+.++.+ ..+-+..|+.++.-|+..   ......+.+ ...|.|..++.++.  ...+..|+.+|..++.. ..
T Consensus        87 L~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~  164 (309)
T PF05004_consen   87 LLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGS  164 (309)
T ss_pred             HHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC
Confidence            567778888888 555666777777777654   234444444 47777888665543  34444555555554431 11


Q ss_pred             cHHHHhcCCCCHHHH--HHHhhc-C---------CHHHHHHHHHHHHHhhc-CChHHHHHHHhCCcHHHHHHhhhcCChh
Q 008437          419 GKEEMNSTPGLVSGL--ATVLDT-G---------ELIEQEQAVSCLFLLCN-GNEKCCQMVLQEGVIPALVSISVNGSTR  485 (565)
Q Consensus       419 ~r~~i~~~~g~v~~L--v~lL~~-~---------s~~~~e~Av~~L~~Lc~-~~~~~~~~v~~~G~v~~Lv~L~~~~s~~  485 (565)
                      +-..+...-..+..+  ..++.. +         ++.+.-.|+.+-.-|.. -+..... -.-+..+|.|+.++.+.+..
T Consensus       165 d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d~~  243 (309)
T PF05004_consen  165 DEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDDVD  243 (309)
T ss_pred             ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCCHH
Confidence            112221100112211  111221 1         12344444443322322 2221122 22245689999999999999


Q ss_pred             HHHHHHHHHHHHHhhccc
Q 008437          486 GRDKAQRLLMLFREQRQR  503 (565)
Q Consensus       486 ~k~~A~~lL~~L~~~r~~  503 (565)
                      +|-.|...|.+|-+....
T Consensus       244 VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  244 VRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            999999999998776553

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.46  E-value=22  Score=40.87  Aligned_cols=207  Identities=14%  Similarity=0.140  Sum_probs=130.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437          219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK  298 (565)
Q Consensus       219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk  298 (565)
                      ..|..+|.+. ....+++|++.|-.+...+.+.      ...+|..|+-..+    .+.+++...-.-|...|.. +.+-
T Consensus        38 ~dL~~lLdSn-kd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVas----kn~EVKkLVyvYLlrYAEe-qpdL  105 (968)
T KOG1060|consen   38 DDLKQLLDSN-KDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVAS----KNIEVKKLVYVYLLRYAEE-QPDL  105 (968)
T ss_pred             HHHHHHHhcc-ccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhc----cCHHHHHHHHHHHHHHhhc-CCCc
Confidence            5788888886 6677888888877775555442      3346777877766    6888887776667666632 2221


Q ss_pred             HHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCC
Q 008437          299 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPS  377 (565)
Q Consensus       299 ~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~  377 (565)
                      ..+    -|..+-+-|..++. ..-+.+|..|+.-   |..+...=++-++-+...+. ++-+++.|+.||-.|-+ +.+
T Consensus       106 ALL----SIntfQk~L~DpN~-LiRasALRvlSsI---Rvp~IaPI~llAIk~~~~D~-s~yVRk~AA~AIpKLYsLd~e  176 (968)
T KOG1060|consen  106 ALL----SINTFQKALKDPNQ-LIRASALRVLSSI---RVPMIAPIMLLAIKKAVTDP-SPYVRKTAAHAIPKLYSLDPE  176 (968)
T ss_pred             eee----eHHHHHhhhcCCcH-HHHHHHHHHHHhc---chhhHHHHHHHHHHHHhcCC-cHHHHHHHHHhhHHHhcCChh
Confidence            111    14455556665543 2233444444421   22222211222333344455 88899999999998865 444


Q ss_pred             ChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 008437          378 NIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC  456 (565)
Q Consensus       378 nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc  456 (565)
                      .+..+++      +++ ||.+.++.+.-.|+.+...+|-   .|-.++ | +--..|..+|...+++.|-..+..|..-|
T Consensus       177 ~k~qL~e------~I~~LLaD~splVvgsAv~AF~evCP---erldLI-H-knyrklC~ll~dvdeWgQvvlI~mL~RYA  245 (968)
T KOG1060|consen  177 QKDQLEE------VIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLI-H-KNYRKLCRLLPDVDEWGQVVLINMLTRYA  245 (968)
T ss_pred             hHHHHHH------HHHHHhcCCCCcchhHHHHHHHHhch---hHHHHh-h-HHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence            5554443      445 7888888888888888887765   233333 2 45778888888888888888888887766


Q ss_pred             c
Q 008437          457 N  457 (565)
Q Consensus       457 ~  457 (565)
                      +
T Consensus       246 R  246 (968)
T KOG1060|consen  246 R  246 (968)
T ss_pred             H
Confidence            5

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.46  E-value=0.31  Score=49.80  Aligned_cols=47  Identities=19%  Similarity=0.267  Sum_probs=40.3

Q ss_pred             CcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      ++=+||||.-=--..|..||||.-|..||.+++-. .+.|-.|+....
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~  467 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI  467 (489)
T ss_pred             ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence            78899999987788889999999999999999974 667888876543

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=88.35  E-value=29  Score=37.73  Aligned_cols=187  Identities=13%  Similarity=0.067  Sum_probs=114.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCc---cchhhhhccCCHHHHHHHhcccccC---CCHHHHHHHHHHHHHhhccC
Q 008437          221 FLNVLNEGENLGQKCNIVEQIRLLLKDDE---EARVFTGANGFVVALLRFLESAVCE---RNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       221 ll~~L~s~~~~~~q~~Al~~L~~La~~~~---~~r~~i~~~G~i~~Lv~lL~s~~~s---~~~~~q~~A~~aL~nLa~~~  294 (565)
                      ++..+.. .+.+.|..|+-.+..+.|.++   -+|+.+.++-+.+.+=++|.+....   .|......++..|.-++. .
T Consensus        16 ~~~L~~~-k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~   93 (698)
T KOG2611|consen   16 CLKLLKG-KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-V   93 (698)
T ss_pred             HHHHhcc-cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-C
Confidence            3344443 478889999999999988764   3778888888888888888754222   234455667777777763 3


Q ss_pred             chh--hHHHHhcCchHHHHHHhcCC---cH------HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHH
Q 008437          295 NRN--KELMLAAGVIPLLEKMISNS---NS------HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKL  363 (565)
Q Consensus       295 ~~n--k~~i~~~G~i~~Lv~lL~s~---~~------~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~  363 (565)
                      ++.  ...|+  +.||.|..++..+   +.      .+.+..+|...+.++.....+...|+++.+.++-.-..-.-...
T Consensus        94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a  171 (698)
T KOG2611|consen   94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMA  171 (698)
T ss_pred             hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence            332  23333  4699999999764   21      24488889999999888888888999999998754321112233


Q ss_pred             HHHHHHHHhc----cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH
Q 008437          364 DALHALYNLS----TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL  413 (565)
Q Consensus       364 ~Al~aL~nLs----~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL  413 (565)
                      -|+.++.-+.    ..++.-..+...  |..+-.=+...+...+-+.+.+|..+
T Consensus       172 lal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  172 LALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             HHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444444333    233333333321  33333312223344556666777643

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.31  E-value=0.28  Score=50.86  Aligned_cols=46  Identities=26%  Similarity=0.585  Sum_probs=34.0

Q ss_pred             CcccccccccccCCce------ecCCCcccchHHHHHHHhcC--CCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYDPV------IIASGQTYERICIEKWLSDG--HSTCPKTQQKLP  118 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV------~~~~g~ty~r~~I~~~~~~~--~~~cP~t~~~l~  118 (565)
                      -.-.|.||-+.+  |+      |-.|||+|.--|++.||...  +.+||.|+-.+.
T Consensus         3 i~A~C~Ic~d~~--p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~   56 (465)
T KOG0827|consen    3 IMAECHICIDGR--PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ   56 (465)
T ss_pred             ccceeeEeccCC--ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence            345699996655  44      33599999999999999853  358999984443

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=88.25  E-value=14  Score=40.71  Aligned_cols=150  Identities=14%  Similarity=0.057  Sum_probs=96.2

Q ss_pred             HHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCC---CHHHHHHHHHHHHHhccCCCChHHHHH
Q 008437          310 LEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT---EHQCKLDALHALYNLSTIPSNIPNLLS  384 (565)
Q Consensus       310 Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~---~~~~~~~Al~aL~nLs~~~~nk~~iv~  384 (565)
                      +.+++.+++.  +..|.-.|..|+.+......+....++..|..+++++.   .......++.++..|-.+.-.-...+.
T Consensus        88 i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~~  167 (713)
T KOG2999|consen   88 IMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESVS  167 (713)
T ss_pred             HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeecc
Confidence            3455555533  22356666667766665566666788999999999882   235566666666665332222222222


Q ss_pred             cCchHHHhhcc--CCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437          385 AGIISGLQSLA--VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN  459 (565)
Q Consensus       385 ~G~v~~Lv~Ll--~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~  459 (565)
                      ...|.....+.  +..+..+-..|+.+|.++..+.......+...--+..|+..|..++...+..|++.|-.+....
T Consensus       168 ~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a  244 (713)
T KOG2999|consen  168 NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA  244 (713)
T ss_pred             cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence            23333333322  2234556688999999999987755555544588999999999999999999998887776533

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=88.19  E-value=22  Score=37.87  Aligned_cols=161  Identities=19%  Similarity=0.220  Sum_probs=98.8

Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhc---cccc---CCCHHHHHHHHHHHH
Q 008437          215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE---SAVC---ERNSYAQEIGAMALF  288 (565)
Q Consensus       215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~---s~~~---s~~~~~q~~A~~aL~  288 (565)
                      .+....++..|..+.....+...++.+|.|+++.. .-.-+-..-.+..|+.+-.   +...   ..+..+...|..+|.
T Consensus        44 ~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~-~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLc  122 (532)
T KOG4464|consen   44 KELGERIFEVLENGEPLTHRVVCLETVRILSRDKD-GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLC  122 (532)
T ss_pred             HHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcccc-ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHH
Confidence            35567788888877556777888999999986532 1111111122333333322   1111   135578888999999


Q ss_pred             HhhccCchhhHHHHhcCchHHHHHHhcCC-------cHHHHHHHHHHHhcCC-CCCchhh-ccCCchHHHHHHhcCC--C
Q 008437          289 NLAVNNNRNKELMLAAGVIPLLEKMISNS-------NSHGAATALYLNLSFL-DDAKPII-GSSHAVPFLVELCKGK--T  357 (565)
Q Consensus       289 nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~-------~~~~~A~aaL~nLs~~-~~~k~~I-~~~g~i~~Lv~lL~~~--~  357 (565)
                      |+-.++...+....+......+...+...       +....-+.+|+-|+.. .+.+..+ ...++++.+.++|.+.  .
T Consensus       123 Nlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgi  202 (532)
T KOG4464|consen  123 NLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGI  202 (532)
T ss_pred             HHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccC
Confidence            99888777888888877666666655322       1122356666666554 3455544 4578999999998742  1


Q ss_pred             ------C---H---HHHHHHHHHHHHhccCC
Q 008437          358 ------E---H---QCKLDALHALYNLSTIP  376 (565)
Q Consensus       358 ------~---~---~~~~~Al~aL~nLs~~~  376 (565)
                            .   +   .....++.+++|+..+.
T Consensus       203 dse~n~~~l~pqe~n~a~EaLK~~FNvt~~~  233 (532)
T KOG4464|consen  203 DSEINVPPLNPQETNRACEALKVFFNVTCDS  233 (532)
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence                  1   1   24456777888887543

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=87.94  E-value=8.6  Score=42.78  Aligned_cols=147  Identities=14%  Similarity=0.072  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc--chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      .+..++..|.+. ++.+|.+|+.....|++--..  --..+...|.|  |..-|    +..++++.--.+.++..+....
T Consensus       605 ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~l----ge~ypEvLgsil~Ai~~I~sv~  677 (975)
T COG5181         605 IVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENL----GEDYPEVLGSILKAICSIYSVH  677 (975)
T ss_pred             HHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhc----CcccHHHHHHHHHHHHHHhhhh
Confidence            456778888887 899999999888888642110  01122223322  22333    3356776544455555443211


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC-C---CchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-D---AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA  368 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~-~---~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a  368 (565)
                      .-.+.+---.|.+|.|..+|++.+.  ..+.++.+..++... +   .|+.+.   .--.|+++|++- +.+.+.+|..+
T Consensus       678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~-nKeiRR~A~~t  753 (975)
T COG5181         678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSW-NKEIRRNATET  753 (975)
T ss_pred             cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHh-hHHHHHhhhhh
Confidence            1112221235899999999998753  345566665565442 2   122222   335688888887 88999999988


Q ss_pred             HHHhcc
Q 008437          369 LYNLST  374 (565)
Q Consensus       369 L~nLs~  374 (565)
                      +..++.
T Consensus       754 fG~Is~  759 (975)
T COG5181         754 FGCISR  759 (975)
T ss_pred             hhhHHh
Confidence            877653

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=87.88  E-value=1.5  Score=35.14  Aligned_cols=65  Identities=18%  Similarity=0.174  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhccCCCChHHHHHcCchHHHhhccC-CCChHHHHHHHHHHHHHhcCcccHHHHhcC
Q 008437          362 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNST  426 (565)
Q Consensus       362 ~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~-~~~~~~~e~al~~L~nLa~~~~~r~~i~~~  426 (565)
                      .+.|++|+.++++.+.....+.+.++|+.++++.. .+...++-.|.-+|..++...++.+.+-+.
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~   69 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDEL   69 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHc
Confidence            68899999999998888877878899999999654 567788899999999999999988877654

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=87.87  E-value=0.32  Score=36.39  Aligned_cols=46  Identities=11%  Similarity=0.163  Sum_probs=33.7

Q ss_pred             ccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 008437           73 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC  121 (565)
Q Consensus        73 f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~  121 (565)
                      ..|=.++..=...++++|||-.++.|-.   .+...-||.|+.++...+
T Consensus         8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~---~~rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    8 QPCVFCGFVGTKGTVLPCGHLICDNCFP---GERYNGCPFCGTPFEFDD   53 (55)
T ss_pred             eeEEEccccccccccccccceeeccccC---hhhccCCCCCCCcccCCC
Confidence            3356666666778899999999998833   333456999999986543

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.63  E-value=0.16  Score=37.64  Aligned_cols=44  Identities=20%  Similarity=0.384  Sum_probs=35.4

Q ss_pred             cccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCC
Q 008437           74 RCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKL  117 (565)
Q Consensus        74 ~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l  117 (565)
                      .|-||.+--.|-|+--|||. .|.+|=.+-+..++.+||.|+.++
T Consensus         9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi   53 (62)
T KOG4172|consen    9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI   53 (62)
T ss_pred             ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence            49999988888888899986 577776666666788999998764

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=87.58  E-value=0.43  Score=34.85  Aligned_cols=42  Identities=21%  Similarity=0.514  Sum_probs=21.1

Q ss_pred             ccccccccCCce---ec--CCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437           75 CPISLQLMYDPV---II--ASGQTYERICIEKWLSDGHSTCPKTQQKL  117 (565)
Q Consensus        75 CpI~~~~m~dPV---~~--~~g~ty~r~~I~~~~~~~~~~cP~t~~~l  117 (565)
                      ||+|.+.| |.-   ..  +||.-+||.|..+-...+...||-|+++.
T Consensus         1 cp~C~e~~-d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEEL-DETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B---CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCccccc-ccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78888877 332   33  48999999998777765678899999875

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=87.46  E-value=0.12  Score=58.67  Aligned_cols=46  Identities=20%  Similarity=0.423  Sum_probs=38.5

Q ss_pred             ccccccccccCCceecCCCcccchHHHHHHHhcC-CCCCCCCCCCCCC
Q 008437           73 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDG-HSTCPKTQQKLPH  119 (565)
Q Consensus        73 f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~-~~~cP~t~~~l~~  119 (565)
                      +.|+||.+ ..+||++.|||-||++|+.+.+..- ...||.|+..+..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            89999999 8999999999999999999987643 3359999765544

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=87.44  E-value=6.4  Score=45.89  Aligned_cols=130  Identities=16%  Similarity=0.140  Sum_probs=88.7

Q ss_pred             hhccCCchHHHHHHhcCCC----CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhcc----CCCC----hHHHHHH
Q 008437          339 IIGSSHAVPFLVELCKGKT----EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA----VPGD----PMWTEKS  406 (565)
Q Consensus       339 ~I~~~g~i~~Lv~lL~~~~----~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll----~~~~----~~~~e~a  406 (565)
                      .+.+.|++..|+.+|.+-.    ........+..|...+....||..+++.|+++.|++.+    ..+.    ..+.+..
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            3456789999999887531    34566777888888888899999999999999999943    3333    6777888


Q ss_pred             HHHHHHHhcCcccHHHH-----hcC-------CCCHHHHHHHhhc----CCHHHHHHHHHHHHHhhcCChHHHHHHHh
Q 008437          407 LAVLLNLAASAAGKEEM-----NST-------PGLVSGLATVLDT----GELIEQEQAVSCLFLLCNGNEKCCQMVLQ  468 (565)
Q Consensus       407 l~~L~nLa~~~~~r~~i-----~~~-------~g~v~~Lv~lL~~----~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~  468 (565)
                      +.++.-|.........-     ...       ..-+..|++.+.+    .++.+.+..+++|-.|+.++.+..+.+++
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~  269 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE  269 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence            88888776633211110     111       1125555555554    36788888899999999888765554443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=87.31  E-value=21  Score=39.58  Aligned_cols=244  Identities=11%  Similarity=0.047  Sum_probs=122.9

Q ss_pred             CHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhc---C-
Q 008437          230 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA---G-  305 (565)
Q Consensus       230 ~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~---G-  305 (565)
                      |+.++..|-..|.++...+  .-.      ++..|++.|-+.  ..+...+..|..+|.|--..++..+..=...   | 
T Consensus        18 D~n~rl~aE~ql~~l~~~d--F~q------f~~ll~qvl~d~--ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~   87 (858)
T COG5215          18 DPNARLRAEAQLLELQSGD--FEQ------FISLLVQVLCDL--NSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGM   87 (858)
T ss_pred             CCCccccHHHHHHHhcccc--HHH------HHHHHHHHHhcc--CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccC
Confidence            6777778888888887543  211      234556666442  1356677777777777433333332211110   1 


Q ss_pred             -------chHHHHHHhcCCcHH--HHHHHHHHHhcCCCCCchhhcc---CCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437          306 -------VIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGS---SHAVPFLVELCKGKTEHQCKLDALHALYNLS  373 (565)
Q Consensus       306 -------~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~~~~k~~I~~---~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs  373 (565)
                             +-......|.+++.+  ..|+.++..++.-     .+-.   .|.+..+++....+.....+..++.++.+.|
T Consensus        88 ~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~-----Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c  162 (858)
T COG5215          88 RHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARM-----ELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC  162 (858)
T ss_pred             CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-----hCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence                   112233445555443  2244455444421     1111   2445555555555534568899999999999


Q ss_pred             cCCCChHHHHHc-CchHHHhh-ccCC-CChHHHHHHHHHHHH-Hhc------CcccHHHHhcCCCCHHHHHHHhhcCCHH
Q 008437          374 TIPSNIPNLLSA-GIISGLQS-LAVP-GDPMWTEKSLAVLLN-LAA------SAAGKEEMNSTPGLVSGLATVLDTGELI  443 (565)
Q Consensus       374 ~~~~nk~~iv~~-G~v~~Lv~-Ll~~-~~~~~~e~al~~L~n-La~------~~~~r~~i~~~~g~v~~Lv~lL~~~s~~  443 (565)
                      ....-...+-.. .++-.++. -+++ .+..++-.++.+|.+ |-.      .++.|.-+      .....+.-...+.+
T Consensus       163 es~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~------mqvvceatq~~d~e  236 (858)
T COG5215         163 ESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF------MQVVCEATQGNDEE  236 (858)
T ss_pred             hccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchh------heeeehhccCCcHH
Confidence            655442222223 34444444 4443 467777888888887 322      12222222      22223333345566


Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHH
Q 008437          444 EQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL  494 (565)
Q Consensus       444 ~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL  494 (565)
                      .+..|.++|..|-.-.-...+-.++......+...+.+.+++++-.|.+--
T Consensus       237 ~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfW  287 (858)
T COG5215         237 LQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFW  287 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence            666666666655543322333223322222223455555555555555444

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=87.15  E-value=1  Score=48.40  Aligned_cols=102  Identities=15%  Similarity=0.062  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHHHHHhccCC----CChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhc-CCCCHH
Q 008437          358 EHQCKLDALHALYNLSTIP----SNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS-TPGLVS  431 (565)
Q Consensus       358 ~~~~~~~Al~aL~nLs~~~----~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~-~~g~v~  431 (565)
                      ...++.+|.++|.|+...-    +-.-..+..|.+..++. ....+...++.+++-+|.||-+++.-.-+-.. .+.+.+
T Consensus       497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~  576 (728)
T KOG4535|consen  497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFN  576 (728)
T ss_pred             hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHH
Confidence            5578889999999987521    22233344566666666 55567788999999999999997754222111 123456


Q ss_pred             HHHHHhhc-CCHHHHHHHHHHHHHhhcCC
Q 008437          432 GLATVLDT-GELIEQEQAVSCLFLLCNGN  459 (565)
Q Consensus       432 ~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~  459 (565)
                      .|..++.. .+-+++-+|+++|..-....
T Consensus       577 ~L~~Lv~~~~NFKVRi~AA~aL~vp~~re  605 (728)
T KOG4535|consen  577 ALTSLVTSCKNFKVRIRAAAALSVPGKRE  605 (728)
T ss_pred             HHHHHHHHhccceEeehhhhhhcCCCCcc
Confidence            66666654 57788999999998766543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=86.86  E-value=12  Score=42.64  Aligned_cols=146  Identities=16%  Similarity=0.118  Sum_probs=86.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc--chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +..++..|.+. ++.+|.+|+..+..++.--..  --..|+..|.|  |...|..    .++++.--.+.+|..+.....
T Consensus       801 ~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylge----eypEvLgsILgAikaI~nvig  873 (1172)
T KOG0213|consen  801 CSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGE----EYPEVLGSILGAIKAIVNVIG  873 (1172)
T ss_pred             HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCc----ccHHHHHHHHHHHHHHHHhcc
Confidence            34455666666 889999999999888753211  11234445543  4455544    667765444444444431111


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC-C---CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-D---AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL  369 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~-~---~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL  369 (565)
                      -.+..==-.|.+|.|..+|++.+.  +++.+.++..++... +   .|+.+.   +--.|+++|+.- +.+.+.+|..++
T Consensus       874 m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkah-kK~iRRaa~nTf  949 (1172)
T KOG0213|consen  874 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAH-KKEIRRAAVNTF  949 (1172)
T ss_pred             ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHH-HHHHHHHHHhhh
Confidence            111111124789999999998753  566777777776542 2   122222   335678888876 788899998888


Q ss_pred             HHhcc
Q 008437          370 YNLST  374 (565)
Q Consensus       370 ~nLs~  374 (565)
                      ..++.
T Consensus       950 G~Iak  954 (1172)
T KOG0213|consen  950 GYIAK  954 (1172)
T ss_pred             hHHHH
Confidence            77653

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.84  E-value=0.42  Score=49.83  Aligned_cols=48  Identities=21%  Similarity=0.475  Sum_probs=39.4

Q ss_pred             CcccccccccccCCce-------e-cCCCcccchHHHHHHHhcC------CCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYDPV-------I-IASGQTYERICIEKWLSDG------HSTCPKTQQKLP  118 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV-------~-~~~g~ty~r~~I~~~~~~~------~~~cP~t~~~l~  118 (565)
                      .+..|=||++.-.+++       + ..|.|+||-.||.+|-...      .+.||.|+.+..
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            6899999999999998       3 4599999999999997432      367999986643

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=86.72  E-value=17  Score=40.58  Aligned_cols=132  Identities=15%  Similarity=0.151  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.+..++..-+ + +..++.=|+..|....+.-++....     +|..++.|..+    +|..++..|+..|-.++.++.
T Consensus        23 ~~y~~il~~~k-g-~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcED----ed~~iR~~aik~lp~~ck~~~   91 (556)
T PF05918_consen   23 EDYKEILDGVK-G-SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCED----EDVQIRKQAIKGLPQLCKDNP   91 (556)
T ss_dssp             HHHHHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-----SSHHHHHHHHHHGGGG--T--
T ss_pred             HHHHHHHHHcc-C-CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhc----ccHHHHHHHHHhHHHHHHhHH
Confidence            34455555544 4 6888889999999998887765544     58889999987    789999999999999997654


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcHHHH--HHHHHHHhcCCCCCchhhccCCchHHHHHHhc---CCCCHHHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNSHGA--ATALYLNLSFLDDAKPIIGSSHAVPFLVELCK---GKTEHQCKLDALHALY  370 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~--A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~---~~~~~~~~~~Al~aL~  370 (565)
                      +....+     ...|+.+|.+.+..+.  +-.+|..|-..       -..+.+..|+.-+.   ++ +..+++.++..|.
T Consensus        92 ~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~-------d~k~tL~~lf~~i~~~~~~-de~~Re~~lkFl~  158 (556)
T PF05918_consen   92 EHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQ-------DPKGTLTGLFSQIESSKSG-DEQVRERALKFLR  158 (556)
T ss_dssp             T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS--HHHHHHHHHHHH
T ss_pred             HHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhcccC-chHHHHHHHHHHH
Confidence            444444     5688999988765433  33333333211       11345556665554   45 6778888887775


Q ss_pred             H
Q 008437          371 N  371 (565)
Q Consensus       371 n  371 (565)
                      .
T Consensus       159 ~  159 (556)
T PF05918_consen  159 E  159 (556)
T ss_dssp             H
T ss_pred             H
Confidence            3

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.72  E-value=20  Score=35.09  Aligned_cols=200  Identities=13%  Similarity=0.127  Sum_probs=120.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHh-------cccccCCCH-HHHHHHHHHHHH
Q 008437          219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFL-------ESAVCERNS-YAQEIGAMALFN  289 (565)
Q Consensus       219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL-------~s~~~s~~~-~~q~~A~~aL~n  289 (565)
                      -..+..+-.+ ++.+|  |+.+|..--+..++.-..+-. .|....|++-+       +...-++.. .-.-+|+..|.-
T Consensus        50 y~wicqlv~g-~~kEq--aL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQc  126 (315)
T COG5209          50 YSWICQLVVG-NPKEQ--ALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQC  126 (315)
T ss_pred             HHHHHHHhcC-CHHHH--HHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHH
Confidence            3445566666 66666  677776665556654444433 66666666432       211111112 223455666666


Q ss_pred             hhccCchhhHHHHhcCchHHHHHHhcCC---cH----HHHHHHHHHHhcCCCCC--chhhccCCchHHHHHHhcCCCCHH
Q 008437          290 LAVNNNRNKELMLAAGVIPLLEKMISNS---NS----HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQ  360 (565)
Q Consensus       290 La~~~~~nk~~i~~~G~i~~Lv~lL~s~---~~----~~~A~aaL~nLs~~~~~--k~~I~~~g~i~~Lv~lL~~~~~~~  360 (565)
                      ++ ++++.|..++++..--.|-.+|...   ..    +-.+.+++..|..+++.  -..+-...++|.++++++.+ +.-
T Consensus       127 la-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g-SEl  204 (315)
T COG5209         127 LA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG-SEL  204 (315)
T ss_pred             Hh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh-hHH
Confidence            66 5789999998887544455555432   11    34478888887766442  22233468999999999998 666


Q ss_pred             HHHHHHHHHHHhccCCCChHHHHH--------cCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437          361 CKLDALHALYNLSTIPSNIPNLLS--------AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEM  423 (565)
Q Consensus       361 ~~~~Al~aL~nLs~~~~nk~~iv~--------~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i  423 (565)
                      .+.-|+-++..+-.++..-..+.+        ..++..++. +...+...+.+.++.+-..||..+..|+.+
T Consensus       205 SktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL  276 (315)
T COG5209         205 SKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL  276 (315)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence            666676666666666554333322        123333444 444567778888888888888888877765

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=86.46  E-value=20  Score=41.74  Aligned_cols=155  Identities=15%  Similarity=0.097  Sum_probs=114.7

Q ss_pred             CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhc-c-CCCChHHHHHHHHHHHHHhcCcccH
Q 008437          343 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSL-A-VPGDPMWTEKSLAVLLNLAASAAGK  420 (565)
Q Consensus       343 ~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~L-l-~~~~~~~~e~al~~L~nLa~~~~~r  420 (565)
                      .+++..|.++.... +.++...-+.+|+..+..+.-.....++-+.|..+.+ + .+.++-+...+-.++..|+....+.
T Consensus       529 p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~  607 (1005)
T KOG2274|consen  529 PMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY  607 (1005)
T ss_pred             hHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh
Confidence            47788888888766 7788888999999999988888888888888988884 3 4467888888888888888866666


Q ss_pred             HHHhcCCCCHHHHHHHhhcCC----HHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHH-hhhcCChhHHHHHHHHHH
Q 008437          421 EEMNSTPGLVSGLATVLDTGE----LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS-ISVNGSTRGRDKAQRLLM  495 (565)
Q Consensus       421 ~~i~~~~g~v~~Lv~lL~~~s----~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~-L~~~~s~~~k~~A~~lL~  495 (565)
                      .-+..  ..||.|+.+|....    .....-|+.+|..+-++.+.--...+-.-++|++.. .+.+++..+-..|.+.|+
T Consensus       608 g~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLr  685 (1005)
T KOG2274|consen  608 GPMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLR  685 (1005)
T ss_pred             cchHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHH
Confidence            66655  58999999997643    556777778887777755422222233346777765 455677777888889998


Q ss_pred             HHHhh
Q 008437          496 LFREQ  500 (565)
Q Consensus       496 ~L~~~  500 (565)
                      .+-..
T Consensus       686 a~Is~  690 (1005)
T KOG2274|consen  686 ALISV  690 (1005)
T ss_pred             HHHhc
Confidence            86543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=86.27  E-value=4.1  Score=38.44  Aligned_cols=93  Identities=15%  Similarity=0.209  Sum_probs=71.9

Q ss_pred             ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcH-HHHHH
Q 008437          399 DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI-PALVS  477 (565)
Q Consensus       399 ~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v-~~Lv~  477 (565)
                      ++.++..++.+|.-|+..-.   .+++  ..++.+...|.+.++.+|..|+.+|..|...+.     +.-.|-+ ..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~---~~ve--~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP---NLVE--PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc---HHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHH
Confidence            35677888888888887442   3443  467889999999999999999999999987653     2222333 66777


Q ss_pred             hhhcCChhHHHHHHHHHHHHHhhc
Q 008437          478 ISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       478 L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      ++.+.++.++..|...+..+...+
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHhc
Confidence            888999999999999999988664

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=86.23  E-value=21  Score=38.46  Aligned_cols=130  Identities=17%  Similarity=0.126  Sum_probs=85.4

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHhccC-CC--------ChHHHHH----cCchHHHhhccCCCChHHHHHHHHHHH
Q 008437          345 AVPFLVELCKGKTEHQCKLDALHALYNLSTI-PS--------NIPNLLS----AGIISGLQSLAVPGDPMWTEKSLAVLL  411 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~-~~--------nk~~iv~----~G~v~~Lv~Ll~~~~~~~~e~al~~L~  411 (565)
                      .+..|+++|.+   ++....|++++.-|..+ ++        +.+.+.+    .-++|.|++-.++.+...+...+.+|.
T Consensus       272 ~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs  348 (415)
T PF12460_consen  272 LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS  348 (415)
T ss_pred             HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence            56778888875   45677788888877765 22        2233333    246777777555555557788888998


Q ss_pred             HHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHh
Q 008437          412 NLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI  478 (565)
Q Consensus       412 nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L  478 (565)
                      ++..+-....-+-+-+..+|.|++-|...+..++..++.+|..+....++....-+ ..+||.|+.+
T Consensus       349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl-~sLI~~LL~l  414 (415)
T PF12460_consen  349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL-SSLIPRLLKL  414 (415)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHhc
Confidence            88885432222333346788888888888999999999999999987754322211 1455555543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=86.22  E-value=26  Score=38.91  Aligned_cols=219  Identities=16%  Similarity=0.155  Sum_probs=104.9

Q ss_pred             HHHhcccccCCCHHHHHHHHHHHHHhhccCchh-hHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCc----
Q 008437          265 LRFLESAVCERNSYAQEIGAMALFNLAVNNNRN-KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK----  337 (565)
Q Consensus       265 v~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n-k~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k----  337 (565)
                      ..||.++..+.-..++..++.++..++..   | ....++ -++..|-.+|.++..  +-.|+.+|-.|+....-+    
T Consensus       266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~---nv~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc  341 (898)
T COG5240         266 RPFLNSWLSDKFEMVFLEAARAVCALSEE---NVGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC  341 (898)
T ss_pred             HHHHHHHhcCcchhhhHHHHHHHHHHHHh---ccCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence            34444433334466888888888887742   3 112211 246677777777643  455888887787543211    


Q ss_pred             -----hhhccC-C--chHHHHHHhcCCCCHH-------------------HHHHHHHHHHHhccCCCChHHHHHcCchHH
Q 008437          338 -----PIIGSS-H--AVPFLVELCKGKTEHQ-------------------CKLDALHALYNLSTIPSNIPNLLSAGIISG  390 (565)
Q Consensus       338 -----~~I~~~-g--~i~~Lv~lL~~~~~~~-------------------~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~  390 (565)
                           ..|.+. .  ..-++..||+.| ..+                   .+..+..||..||..-+.+...    .+.-
T Consensus       342 N~evEsLIsd~Nr~IstyAITtLLKTG-t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s----~l~F  416 (898)
T COG5240         342 NKEVESLISDENRTISTYAITTLLKTG-TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS----YLDF  416 (898)
T ss_pred             ChhHHHHhhcccccchHHHHHHHHHcC-chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH----HHHH
Confidence                 222221 1  223445555555 222                   3334445555555433322221    2334


Q ss_pred             Hhh-ccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChH-------
Q 008437          391 LQS-LAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEK-------  461 (565)
Q Consensus       391 Lv~-Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~-------  461 (565)
                      |.. |+..|..+.+..+..+|..+.. .++.++.++      ..|...+.+  -+--+-++.+|..|-+..+.       
T Consensus       417 L~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraL------e~LC~fIED--cey~~I~vrIL~iLG~EgP~a~~P~~y  488 (898)
T COG5240         417 LGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERAL------EVLCTFIED--CEYHQITVRILGILGREGPRAKTPGKY  488 (898)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHH------HHHHHHHhh--cchhHHHHHHHHHhcccCCCCCCcchH
Confidence            444 4445555555666655554444 234444333      234444432  12234455555555443311       


Q ss_pred             ----HHHHHH-----hCCcHHHHHHhhhcC-ChhHHHHHHHHHHHHHhh
Q 008437          462 ----CCQMVL-----QEGVIPALVSISVNG-STRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       462 ----~~~~v~-----~~G~v~~Lv~L~~~~-s~~~k~~A~~lL~~L~~~  500 (565)
                          +-+.++     ..+++..|....-+- +....+....+|+.+.+.
T Consensus       489 vrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD  537 (898)
T COG5240         489 VRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLND  537 (898)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhc
Confidence                112233     336666676554553 344445555666665444

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.18  E-value=0.37  Score=52.93  Aligned_cols=61  Identities=25%  Similarity=0.406  Sum_probs=42.9

Q ss_pred             Cccccccccccc----CCceecCCCcccchHHHHHHHhcCCCCCCCCCCC-----CCCCCCcccHHHHHHHHHH
Q 008437           71 EELRCPISLQLM----YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQK-----LPHLCLTPNYCVKGLIASW  135 (565)
Q Consensus        71 ~~f~CpI~~~~m----~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~-----l~~~~l~pn~~l~~~i~~~  135 (565)
                      +-++|+||...|    ..||.+-||||.||.|.+.-+..   +|| |...     ...+++.-|++|-+.+..-
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~~De~~~~~~~~e~p~n~alL~~~~d~   79 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TKRDEDSSLMQLKEEPRNYALLRREHDA   79 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CCccccchhcChhhcchhHHHHHhhcch
Confidence            457899997665    46999999999999999987754   577 3211     1224456677777666543

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=86.13  E-value=8.3  Score=38.71  Aligned_cols=97  Identities=12%  Similarity=0.077  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHh
Q 008437          401 MWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI  478 (565)
Q Consensus       401 ~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L  478 (565)
                      .....|+.+|.-+|- ++..|..+.. ...+..|+.+|.. ..+.++-.++.+|..+...++.+.+...+.+++..++.+
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            344667788888887 5555555555 4999999999954 678899999999999998888888889999999999998


Q ss_pred             hhcC--ChhHHHHHHHHHHHHH
Q 008437          479 SVNG--STRGRDKAQRLLMLFR  498 (565)
Q Consensus       479 ~~~~--s~~~k~~A~~lL~~L~  498 (565)
                      ..+.  +..+|-|..+-|...-
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHH
Confidence            7764  5677777777666643

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=86.03  E-value=33  Score=35.92  Aligned_cols=161  Identities=12%  Similarity=0.007  Sum_probs=115.6

Q ss_pred             hhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChH-----HHHHc--CchHHHhhccCCCChHHHHHHHHHH
Q 008437          339 IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIP-----NLLSA--GIISGLQSLAVPGDPMWTEKSLAVL  410 (565)
Q Consensus       339 ~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~-----~iv~~--G~v~~Lv~Ll~~~~~~~~e~al~~L  410 (565)
                      .+...+.+..|+..|..- +-++++++..+..++-... +++.     .+...  .++..|+.--  +++.+.-.+-.+|
T Consensus        71 Ei~~~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~ml  147 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDML  147 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHH
Confidence            334568999999999988 8999999999999987543 3332     22221  2334444322  3556667888999


Q ss_pred             HHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhC---CcHHHHHHhhhcCChhHH
Q 008437          411 LNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE---GVIPALVSISVNGSTRGR  487 (565)
Q Consensus       411 ~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~---G~v~~Lv~L~~~~s~~~k  487 (565)
                      +..+..+.-...++.. ..+..+.+.+...+=++...|..++..|-..........+..   ..+.....|+.+++-.+|
T Consensus       148 Rec~k~e~l~~~iL~~-~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  148 RECIKHESLAKIILYS-ECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHHTTSHHHHHHHHTS-GGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHHhhHHHHHHHhCc-HHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            9999888777777775 788889999998999999999999988665555455555544   456666789999999999


Q ss_pred             HHHHHHHHHHHhhccc
Q 008437          488 DKAQRLLMLFREQRQR  503 (565)
Q Consensus       488 ~~A~~lL~~L~~~r~~  503 (565)
                      +.+.++|.-|--.|.+
T Consensus       227 rqslkLL~ellldr~n  242 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSN  242 (335)
T ss_dssp             HHHHHHHHHHHHSGGG
T ss_pred             hhhHHHHHHHHHchhH
Confidence            9999999987655543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=85.35  E-value=1.3  Score=28.94  Aligned_cols=28  Identities=18%  Similarity=0.334  Sum_probs=24.7

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437          346 VPFLVELCKGKTEHQCKLDALHALYNLST  374 (565)
Q Consensus       346 i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~  374 (565)
                      +|.+++++.++ +++++..|+.+|..++.
T Consensus         2 lp~l~~~l~D~-~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDP-SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence            78999999999 99999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.61  E-value=41  Score=39.09  Aligned_cols=230  Identities=18%  Similarity=0.145  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      |.+...+..+.+. ...+|..|+..|+.+.+.. .....+...+++...+..|++    .|.-+--+|+..+..|+--  
T Consensus       727 e~~qeai~sl~d~-qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~Lkd----edsyvyLnaI~gv~~Lcev--  798 (982)
T KOG4653|consen  727 EPLQEAISSLHDD-QVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKD----EDSYVYLNAIRGVVSLCEV--  798 (982)
T ss_pred             HHHHHHHHHhcCC-cccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcc----cCceeeHHHHHHHHHHHHh--
Confidence            4566677777765 6778889999999998543 445556668888888888887    5666666666655555521  


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCC--CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS  373 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~--~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs  373 (565)
                            .....+|.|.+.-.+.             ...  .+.+..+|     +.+.++++.-.+.-.+..+  .|.+  
T Consensus       799 ------y~e~il~dL~e~Y~s~-------------k~k~~~d~~lkVG-----Eai~k~~qa~Gel~~~y~~--~Li~--  850 (982)
T KOG4653|consen  799 ------YPEDILPDLSEEYLSE-------------KKKLQTDYRLKVG-----EAILKVAQALGELVFKYKA--VLIN--  850 (982)
T ss_pred             ------cchhhHHHHHHHHHhc-------------ccCCCccceehHH-----HHHHHHHHHhccHHHHHHH--HHHH--
Confidence                  2334566665533222             111  13333333     4555554432122222222  1222  


Q ss_pred             cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHH
Q 008437          374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCL  452 (565)
Q Consensus       374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L  452 (565)
                                      ..+..+++++..++..+++.|.+||.--..+..=.-+ .++..++.+... ++.-++..|+-.+
T Consensus       851 ----------------tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li  913 (982)
T KOG4653|consen  851 ----------------TFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLL  913 (982)
T ss_pred             ----------------HHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHH
Confidence                            2222334556677888888888888743322211222 456666666654 5777888888888


Q ss_pred             HHhhcCChHHHHHHHhC---CcHHHHHHhhhc-CChhHHHHHHHHHHHHH
Q 008437          453 FLLCNGNEKCCQMVLQE---GVIPALVSISVN-GSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       453 ~~Lc~~~~~~~~~v~~~---G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L~  498 (565)
                      ..+-..-++..-.+..+   .....+...... .++.+|-.|...|..+-
T Consensus       914 ~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~  963 (982)
T KOG4653|consen  914 AELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ  963 (982)
T ss_pred             HHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            77665443222222222   222233333333 45556666665555543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=84.33  E-value=1.9  Score=28.13  Aligned_cols=28  Identities=18%  Similarity=0.230  Sum_probs=24.9

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437          430 VSGLATVLDTGELIEQEQAVSCLFLLCN  457 (565)
Q Consensus       430 v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~  457 (565)
                      ++.+++++.+.++++|+.|+.+|..|+.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=84.11  E-value=71  Score=35.66  Aligned_cols=147  Identities=12%  Similarity=0.136  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHH
Q 008437          216 ERYQDFLNVLNEG------ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFN  289 (565)
Q Consensus       216 e~i~~ll~~L~s~------~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~n  289 (565)
                      +.++.++.+|...      ++|..-..|...|...+.        +...-.+.+.+.|......+++-.-++.|++++..
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq--------~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGS  392 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ--------LKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGS  392 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH--------HhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhh
Confidence            4567777877651      355666666666666652        12223455677777655544666778889999988


Q ss_pred             hhccCchhhHHHHh--cCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC--CCHHHHH
Q 008437          290 LAVNNNRNKELMLA--AGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK--TEHQCKL  363 (565)
Q Consensus       290 La~~~~~nk~~i~~--~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~--~~~~~~~  363 (565)
                      .-  +..++.....  ..++|.|...+..+.  ..+.+++++..++.+  ....|.-.|-++..+..+.-|  +.+....
T Consensus       393 vm--~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~--va~~i~p~~Hl~~~vsa~liGl~D~p~~~~  468 (858)
T COG5215         393 VM--HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH--VAMIISPCGHLVLEVSASLIGLMDCPFRSI  468 (858)
T ss_pred             hh--cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH--HHHhcCccccccHHHHHHHhhhhccchHHh
Confidence            75  3345444432  467888888776542  345678888777644  122333234444433332222  2567788


Q ss_pred             HHHHHHHHhcc
Q 008437          364 DALHALYNLST  374 (565)
Q Consensus       364 ~Al~aL~nLs~  374 (565)
                      ++.|+.-||..
T Consensus       469 ncsw~~~nlv~  479 (858)
T COG5215         469 NCSWRKENLVD  479 (858)
T ss_pred             hhHHHHHhHHH
Confidence            89999999874

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.08  E-value=2.9  Score=47.59  Aligned_cols=156  Identities=11%  Similarity=0.102  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHh-cCchHHHH
Q 008437          233 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA-AGVIPLLE  311 (565)
Q Consensus       233 ~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~-~G~i~~Lv  311 (565)
                      ...+++.++++|+..++..|..+.+.-+++.+-.++..    +++..|..++..+.||..+..-..+.+++ ...++...
T Consensus       558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~e----e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~  633 (748)
T KOG4151|consen  558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTE----ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWN  633 (748)
T ss_pred             HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhc----ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHH
Confidence            35678999999998888888887775555555555544    67889999999999998765555666666 45677766


Q ss_pred             HHhcCCcHH--HHHHHHHHHhcCC-CCCch-hhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCCChHHHHHcC
Q 008437          312 KMISNSNSH--GAATALYLNLSFL-DDAKP-IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAG  386 (565)
Q Consensus       312 ~lL~s~~~~--~~A~aaL~nLs~~-~~~k~-~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~nk~~iv~~G  386 (565)
                      ..+......  -.+++++..+... ...+. ......+...++.++.++ +.+++...+..+.|+.. ..+....+....
T Consensus       634 ~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~  712 (748)
T KOG4151|consen  634 LNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETE  712 (748)
T ss_pred             HHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccch
Confidence            666553222  2234444433333 33333 333356788999999998 88999999988888543 223344444444


Q ss_pred             chHHHhh
Q 008437          387 IISGLQS  393 (565)
Q Consensus       387 ~v~~Lv~  393 (565)
                      .++.+..
T Consensus       713 ~~~~l~~  719 (748)
T KOG4151|consen  713 VMELLSG  719 (748)
T ss_pred             HHHHHHH
Confidence            4444444

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.08  E-value=19  Score=41.18  Aligned_cols=182  Identities=14%  Similarity=0.108  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .++.+...|... ..-+|.+|+-+|-.+-+..+    .+ -..+-+.+-.+|...   .|+.+.++|...|....   ++
T Consensus       135 l~p~IracleHr-hsYVRrNAilaifsIyk~~~----~L-~pDapeLi~~fL~~e---~DpsCkRNAFi~L~~~D---~E  202 (948)
T KOG1058|consen  135 LMPSIRACLEHR-HSYVRRNAILAIFSIYKNFE----HL-IPDAPELIESFLLTE---QDPSCKRNAFLMLFTTD---PE  202 (948)
T ss_pred             hHHHHHHHHhCc-chhhhhhhheeehhHHhhhh----hh-cCChHHHHHHHHHhc---cCchhHHHHHHHHHhcC---HH
Confidence            345566777776 88899999988887765422    11 134455556777653   57888888877665432   22


Q ss_pred             hhHH--------HHhcC--chHHHHHHhcC-----CcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHH
Q 008437          297 NKEL--------MLAAG--VIPLLEKMISN-----SNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQC  361 (565)
Q Consensus       297 nk~~--------i~~~G--~i~~Lv~lL~s-----~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~  361 (565)
                      ....        |-.-|  ..-.+++++..     +..+..-..++.+|-...+.....-..|.+-.   +  +. ++.+
T Consensus       203 rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~---l--S~-~p~a  276 (948)
T KOG1058|consen  203 RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVT---L--SN-DPTA  276 (948)
T ss_pred             HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEE---c--cC-CHHH
Confidence            2111        11111  11123333321     22233345566665433322222222343322   2  34 6888


Q ss_pred             HHHHHHHHHHhcc-CCCChHHHHHc---------------CchHHHhhccCCCChHHHHHHHHHHHHHhcC
Q 008437          362 KLDALHALYNLST-IPSNIPNLLSA---------------GIISGLQSLAVPGDPMWTEKSLAVLLNLAAS  416 (565)
Q Consensus       362 ~~~Al~aL~nLs~-~~~nk~~iv~~---------------G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~  416 (565)
                      .+.|+.++..|.. ..+|..+++..               |.+--+++++...+..++.+++.+..-|+.+
T Consensus       277 lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  277 LKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS  347 (948)
T ss_pred             HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence            8999999888874 33455444321               1222233344556667777777777766664

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=83.83  E-value=2.8  Score=36.95  Aligned_cols=71  Identities=11%  Similarity=0.050  Sum_probs=55.7

Q ss_pred             CCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          428 GLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       428 g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      ..+..|+++|.. .++....-|+.=|..+++.-+..+..+.+.|+-..++.|+.+.++.+|..|..+++.|-
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            357788888854 46667777777888888877767787778898889999999999999999999888753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=83.64  E-value=0.5  Score=54.13  Aligned_cols=44  Identities=23%  Similarity=0.659  Sum_probs=33.8

Q ss_pred             cccccccccC--C---ceec--CCCcccchHHHHHHHhc-CCCCCCCCCCCC
Q 008437           74 RCPISLQLMY--D---PVII--ASGQTYERICIEKWLSD-GHSTCPKTQQKL  117 (565)
Q Consensus        74 ~CpI~~~~m~--d---PV~~--~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l  117 (565)
                      .|+||.-++.  |   |--.  .|.|.|--+|+-+||.. ++.+||.|+..+
T Consensus      1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219        1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred             hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence            5999998875  3   2211  26788999999999984 678999998654

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=83.60  E-value=0.5  Score=49.10  Aligned_cols=45  Identities=22%  Similarity=0.411  Sum_probs=38.6

Q ss_pred             cccccccccCCceecCCCcccchHHHHHHHhc-CCCCCCCCCCCCC
Q 008437           74 RCPISLQLMYDPVIIASGQTYERICIEKWLSD-GHSTCPKTQQKLP  118 (565)
Q Consensus        74 ~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~  118 (565)
                      +|-||-+==+|=-+-+|||-.|-.|+..|... +..+||.|+-.+.
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            79999998888778899999999999999854 4789999985554

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=83.49  E-value=13  Score=34.99  Aligned_cols=93  Identities=22%  Similarity=0.143  Sum_probs=70.9

Q ss_pred             CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh
Q 008437          358 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL  437 (565)
Q Consensus       358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL  437 (565)
                      ++.++.+++.+|.-|+...++   +++ ..++.+...|.+.++.+++.|+.+|..|...+--+.    .+..+..++..+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~---~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN---LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH---HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence            467899999999999864432   222 246777787888999999999999999987532221    112337788888


Q ss_pred             hcCCHHHHHHHHHHHHHhhcC
Q 008437          438 DTGELIEQEQAVSCLFLLCNG  458 (565)
Q Consensus       438 ~~~s~~~~e~Av~~L~~Lc~~  458 (565)
                      .+.++.++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            889999999999999998876

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.43  E-value=0.62  Score=49.75  Aligned_cols=51  Identities=18%  Similarity=0.455  Sum_probs=37.8

Q ss_pred             CCCcccccccccccC-----------------CceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           69 PPEELRCPISLQLMY-----------------DPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~-----------------dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      +-..--|+||+.-..                 +=+++||.|.|-|.|+++|.+.-.-.||+|+.+|.+
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            445567999986321                 123458999999999999998534579999998753

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.36  E-value=0.55  Score=48.61  Aligned_cols=49  Identities=29%  Similarity=0.409  Sum_probs=42.4

Q ss_pred             cccccccccccCC---ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 008437           72 ELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL  120 (565)
Q Consensus        72 ~f~CpI~~~~m~d---PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~  120 (565)
                      .+.|.|++++|.|   |++.+.|++|--.+|+.|=...+-.||.++..+...
T Consensus       330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~  381 (389)
T KOG0396|consen  330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS  381 (389)
T ss_pred             HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence            3789999999987   899999999999999999875458899998877543

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=83.03  E-value=7.4  Score=39.13  Aligned_cols=134  Identities=22%  Similarity=0.166  Sum_probs=89.3

Q ss_pred             CHHHHHHHHHHHHHhccCCCChHHHHHc-C-chHHHhh-ccCCC---ChHHHHHHHHHHHHHhcCcc-cH--HHHhcCCC
Q 008437          358 EHQCKLDALHALYNLSTIPSNIPNLLSA-G-IISGLQS-LAVPG---DPMWTEKSLAVLLNLAASAA-GK--EEMNSTPG  428 (565)
Q Consensus       358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~-G-~v~~Lv~-Ll~~~---~~~~~e~al~~L~nLa~~~~-~r--~~i~~~~g  428 (565)
                      .+..+.-++++|.|+-.+...+..+.+. + .+...+. +....   +..++-.++.++.|++..-. .+  ....  ..
T Consensus       123 ~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~--~~  200 (268)
T PF08324_consen  123 PPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ--SE  200 (268)
T ss_dssp             SHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH--HH
T ss_pred             cHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH--HH
Confidence            6678888999999999999888888764 3 4555555 44332   67888888899999986210 11  0000  01


Q ss_pred             CHHHHHHHhhc--CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhh-hcCChhHHHHHHHH
Q 008437          429 LVSGLATVLDT--GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS-VNGSTRGRDKAQRL  493 (565)
Q Consensus       429 ~v~~Lv~lL~~--~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~-~~~s~~~k~~A~~l  493 (565)
                      .+..+++.+..  .+++..-.++.+|.+|...+.........-|+-..+.... ....++.++.+..|
T Consensus       201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei  268 (268)
T PF08324_consen  201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI  268 (268)
T ss_dssp             HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence            34555553332  6889999999999999987765555544456655554443 55678888888764

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=82.23  E-value=25  Score=37.57  Aligned_cols=93  Identities=8%  Similarity=0.101  Sum_probs=70.8

Q ss_pred             CchHHHHHHhcCCc-----HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhc-CC--CCHHHHHHHHHHHHHhccC
Q 008437          305 GVIPLLEKMISNSN-----SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCK-GK--TEHQCKLDALHALYNLSTI  375 (565)
Q Consensus       305 G~i~~Lv~lL~s~~-----~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~-~~--~~~~~~~~Al~aL~nLs~~  375 (565)
                      -.+..|..++++..     ....|+.++..+-.+ +..-..|.+.|.++.+++.+. .+  .+.++...--.+|..||.+
T Consensus       106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN  185 (379)
T PF06025_consen  106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN  185 (379)
T ss_pred             hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence            45666777777643     234467777776555 445567778999999999988 54  3667777777889999999


Q ss_pred             CCChHHHHHcCchHHHhhccCC
Q 008437          376 PSNIPNLLSAGIISGLQSLAVP  397 (565)
Q Consensus       376 ~~nk~~iv~~G~v~~Lv~Ll~~  397 (565)
                      ......+.+.+.++.+++++.+
T Consensus       186 ~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  186 NRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             HHHHHHHHhcChHHHHHHHhCC
Confidence            9999999999999999997654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=81.71  E-value=24  Score=42.32  Aligned_cols=108  Identities=11%  Similarity=0.095  Sum_probs=77.8

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh
Q 008437          345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN  424 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~  424 (565)
                      .++.|+..|.+. |...+-+=...|..+|..-.  .+-++++.+|.|.+-+.++++.+...|+..|.-|+...--+...+
T Consensus       618 iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v  694 (1431)
T KOG1240|consen  618 ILSHLITFLNDK-DWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV  694 (1431)
T ss_pred             hHHHHHHHhcCc-cHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH
Confidence            557888888877 77777665566665554322  223577788888887778889999999999999999765555443


Q ss_pred             cCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437          425 STPGLVSGLATVLDTGELIEQEQAVSCLFLLCN  457 (565)
Q Consensus       425 ~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~  457 (565)
                      -  ..+....-+|-..+..++..++.++..+.+
T Consensus       695 ~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  695 K--DILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             H--HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence            3  244455556666788999999999988765

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.68  E-value=12  Score=44.74  Aligned_cols=182  Identities=13%  Similarity=0.127  Sum_probs=99.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCc-cchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhH
Q 008437          221 FLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE  299 (565)
Q Consensus       221 ll~~L~s~~~~~~q~~Al~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~  299 (565)
                      ++.-+++. +...|..++..|..|.+..+ +....+ ..- |+-++=+++.    .+...+++|..+|..+..     ..
T Consensus       702 L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~-I~EvIL~~Ke----~n~~aR~~Af~lL~~i~~-----i~  769 (1176)
T KOG1248|consen  702 LLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLI-PKL-IPEVILSLKE----VNVKARRNAFALLVFIGA-----IQ  769 (1176)
T ss_pred             HHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHH-HHH-HHHHHHhccc----ccHHHHhhHHHHHHHHHH-----HH
Confidence            33444443 45567777777777765544 222221 122 2222222243    578889999998888762     11


Q ss_pred             HHHhcC------chHHHHHHhcCC---cHHHHHHHHHHHhcCC-CCCchhhcc---CCchHHHHHHhcCCCCHHHHHHHH
Q 008437          300 LMLAAG------VIPLLEKMISNS---NSHGAATALYLNLSFL-DDAKPIIGS---SHAVPFLVELCKGKTEHQCKLDAL  366 (565)
Q Consensus       300 ~i~~~G------~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~-~~~k~~I~~---~g~i~~Lv~lL~~~~~~~~~~~Al  366 (565)
                      ...+.|      .|...+.++..+   +....++..|..+... .+.+..+..   .+.|..+.-.|.++ +++..+.|+
T Consensus       770 ~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI  848 (1176)
T KOG1248|consen  770 SSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN-SREIAKAAI  848 (1176)
T ss_pred             hhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence            111122      455555555543   2222222223333221 222233321   23444444556667 899999999


Q ss_pred             HHHHHhcc-CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437          367 HALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA  415 (565)
Q Consensus       367 ~aL~nLs~-~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~  415 (565)
                      +.|.-++. .++.+..--..-+++.++.++.+....++..+..+|..|+.
T Consensus       849 ~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  849 GFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             HHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            99998875 44444444444577777777776667777777777777765

>PF04641 Rtf2: Rtf2 RING-finger

Probab=81.35  E-value=1.6  Score=44.06  Aligned_cols=36  Identities=28%  Similarity=0.491  Sum_probs=32.2

Q ss_pred             CcccccccccccCCceecC-CCcccchHHHHHHHhcC
Q 008437           71 EELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDG  106 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~~  106 (565)
                      .-+.|+||++.+.+||+.+ -|+-|.+.+|-.||...
T Consensus        33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~   69 (260)
T PF04641_consen   33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK   69 (260)
T ss_pred             CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence            3678999999999999774 89999999999999864

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.30  E-value=39  Score=40.12  Aligned_cols=229  Identities=17%  Similarity=0.172  Sum_probs=124.7

Q ss_pred             hHHHHHHHHHhcC-------CCH----HHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhccc-----c-cCCCHH
Q 008437          216 ERYQDFLNVLNEG-------ENL----GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESA-----V-CERNSY  278 (565)
Q Consensus       216 e~i~~ll~~L~s~-------~~~----~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-----~-~s~~~~  278 (565)
                      +.+-.+|..|+++       .+-    ...+..+.+++.+..-+...+..++++|+...|+..|-.-     . +..|.-
T Consensus       720 qelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlc  799 (2799)
T KOG1788|consen  720 QELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLC  799 (2799)
T ss_pred             HHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhh
Confidence            3445566666653       011    2244456677777766777888999999998888777421     1 111211


Q ss_pred             HHHHHHHHHHH---hhc-cCchhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhc
Q 008437          279 AQEIGAMALFN---LAV-NNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK  354 (565)
Q Consensus       279 ~q~~A~~aL~n---La~-~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~  354 (565)
                      +-..-...|+.   ++. .+..|+..+-..=.-..+..+|.-.           .|-+.+..+..|..  ..+.-.+.|-
T Consensus       800 vyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLres-----------gllcvnler~viql--llElalevlv  866 (2799)
T KOG1788|consen  800 VYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRES-----------GLLCVNLERHVIQL--LLELALEVLV  866 (2799)
T ss_pred             hHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHh-----------ccceecchHHHHHH--HHHHHHHhhC
Confidence            11122222222   221 1333443332111122222333211           11122222222211  1111112222


Q ss_pred             CCCCHHHHHHHHHHHHHhcc-----------CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437          355 GKTEHQCKLDALHALYNLST-----------IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM  423 (565)
Q Consensus       355 ~~~~~~~~~~Al~aL~nLs~-----------~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i  423 (565)
                      .. ....-..|+..++.+-.           ....+.++..+|++..|++.+-...+.++-.-+.+|..++.....-++.
T Consensus       867 pp-fLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnael  945 (2799)
T KOG1788|consen  867 PP-FLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAEL  945 (2799)
T ss_pred             Cc-hhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhh
Confidence            22 23333456666665531           1236788899999999999333456788888999999999866555566


Q ss_pred             hcCCCCHHHHHHHhh---cCCHHHHHHHHHHHHHhhcC
Q 008437          424 NSTPGLVSGLATVLD---TGELIEQEQAVSCLFLLCNG  458 (565)
Q Consensus       424 ~~~~g~v~~Lv~lL~---~~s~~~~e~Av~~L~~Lc~~  458 (565)
                      ....|++..|++++.   .++...--+|..++..||..
T Consensus       946 ltS~gcvellleIiypflsgsspfLshalkIvemLgay  983 (2799)
T KOG1788|consen  946 LTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAY  983 (2799)
T ss_pred             hhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhc
Confidence            666699999999875   35666777888888888753

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=81.18  E-value=3.9  Score=45.89  Aligned_cols=149  Identities=19%  Similarity=0.040  Sum_probs=89.5

Q ss_pred             CchHHHHHHhcCC-CCHHHHHHHHHHHHHhccCCC-ChH-HH-----HH-----cCc----hHHHhhccCCCChHHHHHH
Q 008437          344 HAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPS-NIP-NL-----LS-----AGI----ISGLQSLAVPGDPMWTEKS  406 (565)
Q Consensus       344 g~i~~Lv~lL~~~-~~~~~~~~Al~aL~nLs~~~~-nk~-~i-----v~-----~G~----v~~Lv~Ll~~~~~~~~e~a  406 (565)
                      |.+-.|+.++... ..+...++-...|.+|+.+.. ... +-     ++     -|+    ...++.|+++.+..++-..
T Consensus       240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~  319 (1128)
T COG5098         240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCF  319 (1128)
T ss_pred             HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHH
Confidence            4444455555433 234556666666666664332 111 11     11     122    3456668887777777778


Q ss_pred             HHHHHHHhcCcccHHHHhcC-----CCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChH---HHHHHHhCCcHHHHHHh
Q 008437          407 LAVLLNLAASAAGKEEMNST-----PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEK---CCQMVLQEGVIPALVSI  478 (565)
Q Consensus       407 l~~L~nLa~~~~~r~~i~~~-----~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~---~~~~v~~~G~v~~Lv~L  478 (565)
                      +.+++|+..+-.-..+++++     ...+..|++.+.+.+|-.+..|+.++..||..+..   .+..+     +...+.-
T Consensus       320 ~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev-----~~lv~r~  394 (1128)
T COG5098         320 LEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEV-----IRLVGRR  394 (1128)
T ss_pred             HHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHH-----HHHHHHH
Confidence            88888888744333344432     12455555566678999999999999999976642   23332     2223445


Q ss_pred             hhcCChhHHHHHHHHHHHH
Q 008437          479 SVNGSTRGRDKAQRLLMLF  497 (565)
Q Consensus       479 ~~~~s~~~k~~A~~lL~~L  497 (565)
                      +.+.+..+|++|.+++.-|
T Consensus       395 lqDrss~VRrnaikl~SkL  413 (1128)
T COG5098         395 LQDRSSVVRRNAIKLCSKL  413 (1128)
T ss_pred             hhhhhHHHHHHHHHHHHHH
Confidence            6677888999999888764

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=80.86  E-value=8.2  Score=43.01  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=60.6

Q ss_pred             CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHH
Q 008437          358 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATV  436 (565)
Q Consensus       358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~l  436 (565)
                      +...++-|+..|.....+-+..    +.-++..+++|..+.+..++..|+..|-.+|.+. +....+      +..|+++
T Consensus        35 ~~k~K~Laaq~I~kffk~FP~l----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv------aDvL~Ql  104 (556)
T PF05918_consen   35 SPKEKRLAAQFIPKFFKHFPDL----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV------ADVLVQL  104 (556)
T ss_dssp             -HHHHHHHHHHHHHHHCC-GGG----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH------HHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH------HHHHHHH
Confidence            4556666666555544322211    1224555666666677777777777777777752 333333      3457777


Q ss_pred             hhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhh---cCChhHHHHHHHHHH
Q 008437          437 LDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV---NGSTRGRDKAQRLLM  495 (565)
Q Consensus       437 L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~---~~s~~~k~~A~~lL~  495 (565)
                      |.+.++.+...+-.+|..|-..++.        |.+..|..-+.   ++++.+|+++..-|+
T Consensus       105 L~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  105 LQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             TT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            7777766666666666666655542        22333333222   566667777555443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PRK14707 hypothetical protein; Provisional

Probab=80.32  E-value=1.4e+02  Score=38.64  Aligned_cols=236  Identities=13%  Similarity=0.005  Sum_probs=125.5

Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      -.++...+..|+.=.+......|+..|..-.-++.+.+..|-..| |..++.-|+.+   ++..+...|+..|..--.++
T Consensus       372 ~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKW---Pd~~~C~~aa~~lA~~la~d  447 (2710)
T PRK14707        372 PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKW---PDLPICGQAVSALAGRLAHD  447 (2710)
T ss_pred             hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcC---CcchhHHHHHHHHHHHHhcc
Confidence            357777888887643666777788888777778888888876665 56666666665   45666666666665433344


Q ss_pred             chhhHHHHhcCchHHHHHHhcC-CcH--HHHHHHHHH-HhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISN-SNS--HGAATALYL-NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY  370 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s-~~~--~~~A~aaL~-nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~  370 (565)
                      .+.++.|--.+ |..+.+.|+. +++  ...|+..|. .|+...+.+..+--.++...|-.|-+-++...+.+.+.++..
T Consensus       448 ~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~  526 (2710)
T PRK14707        448 TELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAE  526 (2710)
T ss_pred             HHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            44444443333 3333333432 332  233444443 355554444444333333444444343423444454444444


Q ss_pred             HhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc--CCHHHHHH
Q 008437          371 NLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT--GELIEQEQ  447 (565)
Q Consensus       371 nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~--~s~~~~e~  447 (565)
                      .|.....- ..+...--+..++. +.+..+...++.+...|..+.........-++. ..|..++.-|..  ..+..++.
T Consensus       527 rl~~~~~l-~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~a-q~Vs~llNaLSKWP~~~aC~~A  604 (2710)
T PRK14707        527 RVVDELQL-RKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHR-QGVVIVLNALSKWPDTAVCAEA  604 (2710)
T ss_pred             Hhccchhh-hhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhh-hHHHHHHHhhccCCCcHHHHHH
Confidence            44432222 22222222333344 666666777777777777765544444444442 567777777765  34444444


Q ss_pred             HHHHHHHhhc
Q 008437          448 AVSCLFLLCN  457 (565)
Q Consensus       448 Av~~L~~Lc~  457 (565)
                      +..+-..|..
T Consensus       605 a~~LA~~l~~  614 (2710)
T PRK14707        605 VNALAERLVD  614 (2710)
T ss_pred             HHHHHHHhcc
Confidence            4443344443

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=80.21  E-value=70  Score=32.28  Aligned_cols=200  Identities=16%  Similarity=0.162  Sum_probs=117.4

Q ss_pred             hhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC--cHHHHHHHHHHHhcC
Q 008437          255 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS--NSHGAATALYLNLSF  332 (565)
Q Consensus       255 i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~--~~~~~A~aaL~nLs~  332 (565)
                      +....+++.|+..|...  +..+.++..|..+|.++.  .+         +.++.|-++.+.+  ..++.+..++..+-.
T Consensus        63 ~~~~~Av~~l~~vl~de--sq~pmvRhEAaealga~~--~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~  129 (289)
T KOG0567|consen   63 MQDEDAVPVLVEVLLDE--SQEPMVRHEAAEALGAIG--DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEW  129 (289)
T ss_pred             hccchhhHHHHHHhccc--ccchHHHHHHHHHHHhhc--ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence            44567899999988762  356788888999998875  22         2344455555333  112223333332221


Q ss_pred             ---CCC--Cchhh--------ccCCchHHHHHHhcCCCCHHH-HHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCC
Q 008437          333 ---LDD--AKPII--------GSSHAVPFLVELCKGKTEHQC-KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG  398 (565)
Q Consensus       333 ---~~~--~k~~I--------~~~g~i~~Lv~lL~~~~~~~~-~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~  398 (565)
                         .+.  +....        ...+-|..|-..|.+.+.+.. +..|+-.|.|+-.          ..+|-.|++=+..+
T Consensus       130 ~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~  199 (289)
T KOG0567|consen  130 KDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADD  199 (289)
T ss_pred             hhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccc
Confidence               111  01011        112235555555544422222 2333334433321          12555666634445


Q ss_pred             ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc--CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHH
Q 008437          399 DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT--GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALV  476 (565)
Q Consensus       399 ~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~--~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv  476 (565)
                      +...+-.++-+|..|-+           +..|+.|.+.|..  ..+.++..|+.+|..++...           .++.|.
T Consensus       200 SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~  257 (289)
T KOG0567|consen  200 SALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLK  257 (289)
T ss_pred             hHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHH
Confidence            66677777777776643           5678999999875  57889999999999887532           255667


Q ss_pred             HhhhcCChhHHHHHHHHHHHHHh
Q 008437          477 SISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       477 ~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      ..+.+..+.+++.+.-+|.++..
T Consensus       258 e~~~D~~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  258 EYLGDEERVVRESCEVALDMLEY  280 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHH
Confidence            77888888888888888887663

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=80.18  E-value=27  Score=39.34  Aligned_cols=159  Identities=20%  Similarity=0.238  Sum_probs=93.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhh---ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437          222 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG---ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK  298 (565)
Q Consensus       222 l~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~---~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk  298 (565)
                      +..|..- +++.+.-|+..||.++++..-+-..+-   ...++..|+..+.     .++..+..++++|.|+- .++.++
T Consensus       550 l~~l~~w-p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-----~~~an~ll~vR~L~N~f-~~~~g~  622 (745)
T KOG0301|consen  550 LAILLQW-PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-----ADPANQLLVVRCLANLF-SNPAGR  622 (745)
T ss_pred             HHHHhcC-CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-----cchhHHHHHHHHHHHhc-cCHHHH
Confidence            3444444 678889999999999887654433332   1335555665554     35678888999999996 467777


Q ss_pred             HHHHhcCchHHHHHHh---cCCc--HHHHHHH-HHHHhcCC--CCCchhhccCCchHHHHHHhc----CCCCHHHHHHHH
Q 008437          299 ELMLAAGVIPLLEKMI---SNSN--SHGAATA-LYLNLSFL--DDAKPIIGSSHAVPFLVELCK----GKTEHQCKLDAL  366 (565)
Q Consensus       299 ~~i~~~G~i~~Lv~lL---~s~~--~~~~A~a-aL~nLs~~--~~~k~~I~~~g~i~~Lv~lL~----~~~~~~~~~~Al  366 (565)
                      +.+...  ...+...+   ++.+  ....|.+ .++|++..  .++-+    .++.+.|..++.    .-.+.++.-.++
T Consensus       623 ~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l  696 (745)
T KOG0301|consen  623 ELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLL  696 (745)
T ss_pred             HHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHH
Confidence            777654  22222222   2222  1222333 34455432  22211    344444444433    222456677788


Q ss_pred             HHHHHhccCCCChHHHHHcCchHHHhh
Q 008437          367 HALYNLSTIPSNIPNLLSAGIISGLQS  393 (565)
Q Consensus       367 ~aL~nLs~~~~nk~~iv~~G~v~~Lv~  393 (565)
                      .||-+|+..+.+..++...=-|..++.
T Consensus       697 ~AlgtL~t~~~~~~~~A~~~~v~sia~  723 (745)
T KOG0301|consen  697 VALGTLMTVDASVIQLAKNRSVDSIAK  723 (745)
T ss_pred             HHHHhhccccHHHHHHHHhcCHHHHHH
Confidence            899999998888777777656666666

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=80.03  E-value=56  Score=32.98  Aligned_cols=209  Identities=17%  Similarity=0.106  Sum_probs=121.0

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHh
Q 008437          224 VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA  303 (565)
Q Consensus       224 ~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~  303 (565)
                      -|.+. +...|.+|+..|..+...-+..   .....-+..|+.++.+..  .|......++.+|..|.....-....   
T Consensus         7 ~Ltse-d~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~---   77 (262)
T PF14500_consen    7 YLTSE-DPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKMKNFSPES---   77 (262)
T ss_pred             hhCCC-CHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhCcCCChhh---
Confidence            45555 8899999999999887654322   133334788888887654  34555555566666665322111111   


Q ss_pred             cCchHHHHHHhcCC-------cHHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437          304 AGVIPLLEKMISNS-------NSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLST  374 (565)
Q Consensus       304 ~G~i~~Lv~lL~s~-------~~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~  374 (565)
                        +...+-.+.+.-       ..+..+..+|..|..+  ....+..  .+.+..++++++.+.||+....+...+..+..
T Consensus        78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~  153 (262)
T PF14500_consen   78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ  153 (262)
T ss_pred             --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence              122222223222       1234455555555432  2333332  46788888988877799999999998888875


Q ss_pred             CCCChHHHHHcCchHHHhhcc--------CC--CCh--HHHHHHH-HHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCC
Q 008437          375 IPSNIPNLLSAGIISGLQSLA--------VP--GDP--MWTEKSL-AVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGE  441 (565)
Q Consensus       375 ~~~nk~~iv~~G~v~~Lv~Ll--------~~--~~~--~~~e~al-~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s  441 (565)
                      .-+.      ...++.|.+.+        ..  +++  ...+.-- ++...|+.++    .+.  +-+++.|++.|.+++
T Consensus       154 ~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa--~~~~p~LleKL~s~~  221 (262)
T PF14500_consen  154 EFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFA--PFAFPLLLEKLDSTS  221 (262)
T ss_pred             hccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhH--HHHHHHHHHHHcCCC
Confidence            4442      22333333321        11  222  2233333 3333444433    222  257899999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q 008437          442 LIEQEQAVSCLFLLCN  457 (565)
Q Consensus       442 ~~~~e~Av~~L~~Lc~  457 (565)
                      +.++..++.+|...+.
T Consensus       222 ~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  222 PSVKLDSLQTLKACIE  237 (262)
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            9999999999987554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	565
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		2e-23
2f42_A	179	Dimerization And U-Box Domains Of Zebrafish C-Termi		7e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 56/72 (77%)
Query: 70  PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
           PE  RCPISL+LM DPVI+++GQTYER  I+KWL  GH TCPK+Q+ L H  LTPNY +K
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 130 GLIASWCEMNGV 141
            LIA WCE NG+
Sbjct: 66  SLIALWCESNGI 77

>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 70  PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
           P+ L   IS +LM +P I  SG TY+R  IE+ L       P T+  L    L PN  +K
Sbjct: 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMK 163
Query: 130 GLIASWCEMNG 140
            +I ++ + NG
Sbjct: 164 EVIDAFIQENG 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	565
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	6e-40
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	1e-35
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-33
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-22
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-21
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-20
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-20
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-14
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-31
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-21
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-19
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-19
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-14
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-31
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-21
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-20
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-20
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-19
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-15
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	7e-28
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	1e-27
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-26
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-18
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-11
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-26
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-11
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-10
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-25
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-20
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-10
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-24
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-21
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-15
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-14
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	3e-24
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-22
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-18
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-21
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-14
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-14
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	3e-19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-17
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-17
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-06
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	3e-15
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-15
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-13
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-15
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-08
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-10
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	7e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-09
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-07
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	3e-07
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	3e-07
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	1e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-06
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-06
1z6u_A	150	NP95-like ring finger protein isoform B; structura	3e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-06
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	8e-06
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	9e-06
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-05
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-05
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	4e-05
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	8e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	9e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	2e-04
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	3e-04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	3e-04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	6e-04

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  138 bits (351), Expect = 6e-40
 Identities = 48/75 (64%), Positives = 57/75 (76%)

Query: 67  PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 126
           P  PE  RCPISL+LM DPVI+++GQTYER  I+KWL  GH TCPK+Q+ L H  LTPNY
Sbjct: 3   PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62

Query: 127 CVKGLIASWCEMNGV 141
            +K LIA WCE NG+
Sbjct: 63  VLKSLIALWCESNGI 77

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  130 bits (329), Expect = 1e-35
 Identities = 26/75 (34%), Positives = 37/75 (49%)

Query: 69  PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCV 128
            P+ L   IS +LM +P I  SG TY+R  IE+ L       P T+  L    L PN  +
Sbjct: 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 162

Query: 129 KGLIASWCEMNGVSV 143
           K +I ++ + NG   
Sbjct: 163 KEVIDAFIQENGWVE 177

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  131 bits (331), Expect = 6e-33
 Identities = 58/280 (20%), Positives = 99/280 (35%), Gaps = 13/280 (4%)

Query: 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 280
            +  +    ++         +  L    E       + G + AL++ L S          
Sbjct: 64  IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG-IPALVKMLGSP----VDSVL 118

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLD-DA 336
                 L NL ++    K  +  AG +  +  +++ +N          L   L++ + ++
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ-ILAYGNQES 177

Query: 337 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV 396
           K II +S     LV + +  T  +        L  LS   SN P ++ AG +  L     
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237

Query: 397 PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 456
                  +  L  L NL+ +A  +E M    GL+  L  +L + ++     A   L  L 
Sbjct: 238 DPSQRLVQNCLWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLT 294

Query: 457 NGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 496
             N K   MV Q G I ALV   +    R       +  L
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  100 bits (250), Expect = 1e-22
 Identities = 50/287 (17%), Positives = 99/287 (34%), Gaps = 18/287 (6%)

Query: 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSY 278
           Q  + +LN+  N+       + +++L   ++E+++   A+G   AL+  + +        
Sbjct: 146 QKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEK 201

Query: 279 AQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDD 335
                +  L  L+V ++ NK  ++ AG +  L   +++ +          L  NLS  D 
Sbjct: 202 LLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR-NLS--DA 257

Query: 336 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSL 394
           A    G    +  LV+L      +     A   L NL+     N   +   G I  L   
Sbjct: 258 ATKQEGMEGLLGTLVQLLGSDDINV-VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316

Query: 395 AVPGDPMW--TEKSLAVLLNLAASAAGKEEMNS---TPGLVSGLATVLDTGELIEQEQAV 449
            +        TE ++  L +L +     E   +       +  +  +L         +A 
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376

Query: 450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 496
             L             + ++G IP LV + V      + +       
Sbjct: 377 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 95.2 bits (237), Expect = 6e-21
 Identities = 41/256 (16%), Positives = 86/256 (33%), Gaps = 16/256 (6%)

Query: 241 IRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 300
           +  L+   ++A + T A   +  L + L       +       A+ +  L+        +
Sbjct: 2   VVNLINYQDDAELATRA---IPELTKLLNDE----DQVVVNKAAVMVHQLSKKEASRHAI 54

Query: 301 MLAAGVIPLLEKMISNSNS----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK 356
           M +  ++  + + + N+N        A  L+ NLS   +    I  S  +P LV++    
Sbjct: 55  MRSPQMVSAIVRTMQNTNDVETARCTAGTLH-NLSHHREGLLAIFKSGGIPALVKMLGSP 113

Query: 357 TEHQCKLDALHALYNLSTIPSNIPNL-LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415
            +      A+  L+NL             AG +  + +L    +  +   +   L  LA 
Sbjct: 114 VD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172

Query: 416 SAAGKEEMNSTPGLVSGLATVLDTGELIE-QEQAVSCLFLLCNGNEKCCQMVLQEGVIPA 474
                + +    G    L  ++ T    +        L +L   +      +++ G + A
Sbjct: 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQA 231

Query: 475 LVSISVNGSTRGRDKA 490
           L     + S R     
Sbjct: 232 LGLHLTDPSQRLVQNC 247

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 94.5 bits (235), Expect = 1e-20
 Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 9/214 (4%)

Query: 286 ALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDA-KPIIG 341
           A+ NL    N   +  LA   IP L K++++ +    + AA  +   LS  + +   I+ 
Sbjct: 1   AVVNLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMV-HQLSKKEASRHAIMR 56

Query: 342 SSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPM 401
           S   V  +V   +   + +        L+NLS     +  +  +G I  L  +       
Sbjct: 57  SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDS 116

Query: 402 WTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEK 461
               ++  L NL     G +      G +  +  +L+   +        CL +L  GN++
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 462 CCQMVLQEGVIPALVSISVNGSTRG-RDKAQRLL 494
              ++L  G   ALV+I    +         R+L
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 210

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 92.5 bits (230), Expect = 5e-20
 Identities = 49/297 (16%), Positives = 90/297 (30%), Gaps = 41/297 (13%)

Query: 229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF 288
            +     N +  +R L     +     G    +  L++ L S     +       A  L 
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEGMEGL---LGTLVQLLGSD----DINVVTCAAGILS 291

Query: 289 NLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG-----AATALYLNLSFLDDAKPI---- 339
           NL  NN +NK ++   G I  L + +  +         A  AL  +L+       +    
Sbjct: 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR-HLTSRHQEAEMAQNA 350

Query: 340 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGD 399
           +   + +P +V+L    +        +  + NL+  P+N   L   G I  L  L V   
Sbjct: 351 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 410

Query: 400 PMW----------------------TEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 437
                                     E     L  LA     +  +      +     +L
Sbjct: 411 QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL-NTIPLFVQLL 469

Query: 438 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494
            +     Q  A   L  L   +++  + +  EG    L  +  + +      A  +L
Sbjct: 470 YSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 32/219 (14%), Positives = 68/219 (31%), Gaps = 34/219 (15%)

Query: 224 VLNEGENLGQKCNIVEQIRLL---LKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 280
           VL  G+        +  +R L    ++ E A+     +  +  +++ L       + +  
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP----SHWPL 372

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--------------------- 319
               + L         N   +   G IP L +++  ++                      
Sbjct: 373 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432

Query: 320 ----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 375
                G   AL+  L+     + +I   + +P  V+L     E   +  A   L  L+  
Sbjct: 433 EEIVEGCTGALH-ILARDVHNRIVIRGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQD 490

Query: 376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 414
                 + + G  + L  L    +      + AVL  ++
Sbjct: 491 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  128 bits (323), Expect = 2e-31
 Identities = 57/275 (20%), Positives = 96/275 (34%), Gaps = 13/275 (4%)

Query: 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 280
            +  +    ++             L    E  +    +G + AL+  L S          
Sbjct: 197 IVRTMQNTNDVETARCTSG-TLHNLSHHREGLLAIFKSGGIPALVNMLGSP----VDSVL 251

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLD-DA 336
                 L NL ++    K  +  AG +  +  +++ +N          L   L++ + ++
Sbjct: 252 FHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ-ILAYGNQES 310

Query: 337 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV 396
           K II +S     LV + +  T  +        L  LS   SN P ++ AG +  L     
Sbjct: 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 370

Query: 397 PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 456
                  +  L  L NL+ +A  +E M    GL+  L  +L + ++     A   L  L 
Sbjct: 371 DPSQRLVQNCLWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLT 427

Query: 457 NGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQ 491
             N K   MV Q G I ALV   +    R      
Sbjct: 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 462

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 97.8 bits (243), Expect = 2e-21
 Identities = 49/287 (17%), Positives = 98/287 (34%), Gaps = 18/287 (6%)

Query: 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSY 278
           Q  + +LN+  N+       + +++L   ++E+++   A+G   AL+  + +        
Sbjct: 279 QKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEK 334

Query: 279 AQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDD 335
                +  L  L+V ++ NK  ++ AG +  L   +++ +          L  NLS  D 
Sbjct: 335 LLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR-NLS--DA 390

Query: 336 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSL 394
           A    G    +  LV+L      +     A   L NL+     N   +   G I  L   
Sbjct: 391 ATKQEGMEGLLGTLVQLLGSDDINV-VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 449

Query: 395 AVPGDPMWT--EKSLAVLLNLAASAAGKEEMNSTP---GLVSGLATVLDTGELIEQEQAV 449
            +         E ++  L +L +     E   +       +  +  +L         +A 
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 509

Query: 450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 496
             L             + ++G IP LV + V      + +       
Sbjct: 510 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 556

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 92.0 bits (228), Expect = 1e-19
 Identities = 54/288 (18%), Positives = 107/288 (37%), Gaps = 12/288 (4%)

Query: 207 EDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVF--TGANGFVVAL 264
             E  +   +   ++    N+  N  Q  +I  Q  +       A +F  T   G  +  
Sbjct: 51  NPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPS 110

Query: 265 LRFLES--AVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--- 319
            +F  +     +R +   ++   A+ NL    N   +  LA   IP L K++++ +    
Sbjct: 111 TQFDSAHPTNVQRLAEPSQMLKHAVVNLI---NYQDDAELATRAIPELTKLLNDEDQVVV 167

Query: 320 HGAATALYLNLSFLDDAK-PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN 378
           + AA  +   LS  + ++  I+ S   V  +V   +   + +        L+NLS     
Sbjct: 168 NKAAVMV-HQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG 226

Query: 379 IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD 438
           +  +  +G I  L ++           ++  L NL     G +      G +  +  +L+
Sbjct: 227 LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 286

Query: 439 TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRG 486
              +        CL +L  GN++   ++L  G   ALV+I    +   
Sbjct: 287 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 334

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 90.1 bits (223), Expect = 4e-19
 Identities = 51/297 (17%), Positives = 91/297 (30%), Gaps = 41/297 (13%)

Query: 229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF 288
            +     N +  +R L     +     G  G +V LL          +       A  L 
Sbjct: 372 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG-------SDDINVVTCAAGILS 424

Query: 289 NLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG-----AATALYLNLSF----LDDAKPI 339
           NL  NN +NK ++   G I  L + +  +         A  AL  +L+      + A+  
Sbjct: 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL-RHLTSRHQDAEMAQNA 483

Query: 340 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGD 399
           +   + +P +V+L    +        +  + NL+  P+N   L   G I  L  L V   
Sbjct: 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 543

Query: 400 PMW----------------------TEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 437
                                     E     L  LA     +  +      +     +L
Sbjct: 544 QDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG-LNTIPLFVQLL 602

Query: 438 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494
            +     Q  A   L  L   +++  + +  EG    L  +  + +      A  +L
Sbjct: 603 YSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 658

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 75.1 bits (184), Expect = 3e-14
 Identities = 35/238 (14%), Positives = 72/238 (30%), Gaps = 34/238 (14%)

Query: 224 VLNEGENLGQKCNIVEQIRLL---LKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 280
           VL  G+        +  +R L    +D E A+     +  +  +++ L       + +  
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP----SHWPL 505

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--------------------- 319
               + L         N   +   G IP L +++  ++                      
Sbjct: 506 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 565

Query: 320 ----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 375
                    AL+  L+     + +I   + +P  V+L     E   +  A   L  L+  
Sbjct: 566 EEIVEACTGALH-ILARDIHNRIVIRGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQD 623

Query: 376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGL 433
                 + + G  + L  L    +      + AVL  ++       +   +  L S L
Sbjct: 624 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL 681

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 5/98 (5%)

Query: 229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF 288
                +      +  L +D E A            L   L S    RN       A  LF
Sbjct: 605 PIENIQRVAAGVLCELAQDKEAAEAIEAEGA-TAPLTELLHS----RNEGVATYAAAVLF 659

Query: 289 NLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATAL 326
            ++ +  ++ +  L+  +   L +    + +      L
Sbjct: 660 RMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  127 bits (321), Expect = 3e-31
 Identities = 58/280 (20%), Positives = 99/280 (35%), Gaps = 13/280 (4%)

Query: 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 280
            +  +    ++         +  L    E       + G + AL++ L S          
Sbjct: 61  IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG-IPALVKMLGSP----VDSVL 115

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLD-DA 336
                 L NL ++    K  +  AG +  +  +++ +N          L   L++ + ++
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ-ILAYGNQES 174

Query: 337 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV 396
           K II +S     LV + +  T  +        L  LS   SN P ++ AG +  L     
Sbjct: 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 234

Query: 397 PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 456
                  +  L  L NL+ +A  +E M    GL+  L  +L + ++     A   L  L 
Sbjct: 235 DPSQRLVQNCLWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLT 291

Query: 457 NGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 496
             N K   MV Q G I ALV   +    R       +  L
Sbjct: 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 96.5 bits (240), Expect = 3e-21
 Identities = 49/286 (17%), Positives = 98/286 (34%), Gaps = 18/286 (6%)

Query: 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 280
            + +LN+  N+       + +++L   ++E+++   A+G   AL+  + +          
Sbjct: 145 MVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLL 200

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAK 337
              +  L  L+V ++ NK  ++ AG +  L   +++ +          L  NLS  D A 
Sbjct: 201 WTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL-RNLS--DAAT 256

Query: 338 PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAV 396
              G    +  LV+L      +     A   L NL+     N   +   G I  L    +
Sbjct: 257 KQEGMEGLLGTLVQLLGSDDINV-VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315

Query: 397 PGDPMW--TEKSLAVLLNLAASAAGKEEMNST---PGLVSGLATVLDTGELIEQEQAVSC 451
                   TE ++  L +L +     E   +       +  +  +L         +A   
Sbjct: 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375

Query: 452 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 497
           L             + ++G IP LV + V      + +        
Sbjct: 376 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 421

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 93.1 bits (231), Expect = 4e-20
 Identities = 51/304 (16%), Positives = 93/304 (30%), Gaps = 41/304 (13%)

Query: 222 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQE 281
           L +     +     N +  +R L     +     G    +  L++ L S     +     
Sbjct: 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL---LGTLVQLLGSD----DINVVT 281

Query: 282 IGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG-----AATALYLNLSFLDD- 335
             A  L NL  NN +NK ++   G I  L + +  +         A  AL  +L+     
Sbjct: 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL-RHLTSRHQE 340

Query: 336 ---AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQ 392
              A+  +   + +P +V+L    +        +  + NL+  P+N   L   G I  L 
Sbjct: 341 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 400

Query: 393 SLAVPGDP----------------------MWTEKSLAVLLNLAASAAGKEEMNSTPGLV 430
            L V                             E     L  LA     +  +      +
Sbjct: 401 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL-NTI 459

Query: 431 SGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKA 490
                +L +     Q  A   L  L   +++  + +  EG    L  +  + +      A
Sbjct: 460 PLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 518

Query: 491 QRLL 494
             +L
Sbjct: 519 AAVL 522

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 92.3 bits (229), Expect = 8e-20
 Identities = 41/208 (19%), Positives = 79/208 (37%), Gaps = 6/208 (2%)

Query: 295 NRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAK-PIIGSSHAVPFLV 350
           N   +  LA   IP L K++++ +    + AA  +   LS  + ++  I+ S   V  +V
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMV-HQLSKKEASRHAIMRSPQMVSAIV 62

Query: 351 ELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVL 410
              +   + +        L+NLS     +  +  +G I  L  +           ++  L
Sbjct: 63  RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 411 LNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG 470
            NL     G +      G +  +  +L+   +        CL +L  GN++   ++L  G
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 182

Query: 471 VIPALVSISVNGSTRG-RDKAQRLLMLF 497
              ALV+I    +         R+L + 
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVL 210

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 91.2 bits (226), Expect = 2e-19
 Identities = 41/253 (16%), Positives = 86/253 (33%), Gaps = 16/253 (6%)

Query: 244 LLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA 303
           L+   ++A + T A   +  L + L       +       A+ +  L+        +M +
Sbjct: 2   LINYQDDAELATRA---IPELTKLLNDE----DQVVVNKAAVMVHQLSKKEASRHAIMRS 54

Query: 304 AGVIPLLEKMISNSNS----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEH 359
             ++  + + + N+N        A  L+ NLS   +    I  S  +P LV++     + 
Sbjct: 55  PQMVSAIVRTMQNTNDVETARCTAGTLH-NLSHHREGLLAIFKSGGIPALVKMLGSPVDS 113

Query: 360 QCKLDALHALYNLSTIPSNIPNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA 418
                A+  L+NL          +  AG +  + +L    +  +   +   L  LA    
Sbjct: 114 V-LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172

Query: 419 GKEEMNSTPGLVSGLATVLDTGELIE-QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS 477
             + +    G    L  ++ T    +        L +L   +      +++ G + AL  
Sbjct: 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGL 231

Query: 478 ISVNGSTRGRDKA 490
              + S R     
Sbjct: 232 HLTDPSQRLVQNC 244

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 39/265 (14%), Positives = 81/265 (30%), Gaps = 37/265 (13%)

Query: 224 VLNEGENLGQKCNIVEQIRLL---LKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 280
           VL  G+        +  +R L    ++ E A+     +  +  +++ L       + +  
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP----SHWPL 369

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--------------------- 319
               + L         N   +   G IP L +++  ++                      
Sbjct: 370 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 429

Query: 320 ----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 375
                G   AL+  L+     + +I   + +P  V+L     E   +  A   L  L+  
Sbjct: 430 EEIVEGCTGALH-ILARDVHNRIVIRGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQD 487

Query: 376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLAT 435
                 + + G  + L  L    +      + AVL  +   +  K +       V   ++
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM---SEDKPQDYKKRLSVELTSS 544

Query: 436 VLDTGELIEQEQAVSCLFLLCNGNE 460
           +  T  +   E A   L +   G  
Sbjct: 545 LFRTEPMAWNETADLGLDIGAQGEP 569

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  105 bits (265), Expect = 7e-28
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 70  PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
           P+E R P+   LM DPV + SG   +R  I + L     T P  +Q L    L P   +K
Sbjct: 12  PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESMLEPVPELK 70

Query: 130 GLIASWCE 137
             I +W  
Sbjct: 71  EQIQAWMR 78

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  105 bits (265), Expect = 1e-27
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 69  PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCV 128
            P+E R P+   LM DPV + SG   +R  I + L     T P  +Q L    L P   +
Sbjct: 26  APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFNRQTLTESMLEPVPEL 84

Query: 129 KGLIASWCE 137
           K  I +W  
Sbjct: 85  KEQIQAWMR 93

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  109 bits (273), Expect = 3e-26
 Identities = 53/287 (18%), Positives = 93/287 (32%), Gaps = 24/287 (8%)

Query: 230 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQEI 282
              Q C  V  +  L  D+E         G + A+   L+             +   +  
Sbjct: 45  VEHQICPAVCVLMKLSFDEEHRHAMNELGG-LQAIAELLQVDCEMYGLTNDHYSITLRRY 103

Query: 283 GAMALFNLAVNNNRNK-ELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDDA-- 336
             MAL NL   +  NK  L    G +  L   + + +       A+ L  NLS+  D   
Sbjct: 104 AGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR-NLSWRADVNS 162

Query: 337 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAG-----IISG 390
           K  +    +V  L+E      +       L AL+NLS     N  ++ +       ++  
Sbjct: 163 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 222

Query: 391 LQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST---PGLVSGLATVLDTGELIEQEQ 447
           L   +        E    +L N+++  A  E+          +  L   L +  L     
Sbjct: 223 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282

Query: 448 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494
           A   L+ L   N K  + +   G +  L ++  +        +   L
Sbjct: 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 84.1 bits (208), Expect = 8e-18
 Identities = 43/249 (17%), Positives = 80/249 (32%), Gaps = 22/249 (8%)

Query: 243 LLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-NNRNKELM 301
           L   D           G + AL+  L+S     +   Q++ A  L NL+   +  +K+ +
Sbjct: 111 LTFGDVANKATLCSMKGCMRALVAQLKSE----SEDLQQVIASVLRNLSWRADVNSKKTL 166

Query: 302 LAAGVIPLLEKMISNSNSHG----AATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKG 355
              G +  L +               +AL+ NLS         I     A+ FLV     
Sbjct: 167 REVGSVKALMECALEVKKESTLKSVLSALW-NLSAHCTENKADICAVDGALAFLVGTLTY 225

Query: 356 KTEHQC---KLDALHALYNLSTI----PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLA 408
           +++             L N+S++      +   L     +  L              +  
Sbjct: 226 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285

Query: 409 VLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN---EKCCQM 465
            L NL+A     +E     G VS L  ++ +   +    + + L  L        K   +
Sbjct: 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANI 345

Query: 466 VLQEGVIPA 474
           +     +P+
Sbjct: 346 MSPGSSLPS 354

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 34/232 (14%), Positives = 66/232 (28%), Gaps = 21/232 (9%)

Query: 281 EIGAMALFN--LAVNNNRNKELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDD 335
               + L     A      +        +   +  +     H    A   L   LSF ++
Sbjct: 6   HHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM-KLSFDEE 64

Query: 336 AKPIIGSSHAVPFLVELCKGKTEHQCKLD----------ALHALYNLSTIPSNIPNLL-- 383
            +  +     +  + EL +   E     +          A  AL NL+         L  
Sbjct: 65  HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124

Query: 384 SAGIISGLQSLAVPGDPMWTEKSLAVLLNLA--ASAAGKEEMNSTPGLVSGLATVLDTGE 441
             G +  L +          +   +VL NL+  A    K+ +     + + +   L+  +
Sbjct: 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 184

Query: 442 LIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 492
               +  +S L+ L     E    +   +G +  LV      S         
Sbjct: 185 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  110 bits (277), Expect = 3e-26
 Identities = 57/301 (18%), Positives = 102/301 (33%), Gaps = 27/301 (8%)

Query: 229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQE 281
               Q C  V  +  L  D+E         G + A+   L+             +   + 
Sbjct: 160 PVEHQICPAVCVLMKLSFDEEHRHAMNELGG-LQAIAELLQVDCEMYGLTNDHYSITLRR 218

Query: 282 IGAMALFNLAVNNNRNKELMLA-AGVIPLLEKMISNSNSHG---AATALYLNLSFL--DD 335
              MAL NL   +  NK  + +  G +  L   + + +       A+ L  NLS+    +
Sbjct: 219 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR-NLSWRADVN 277

Query: 336 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSA-GIISGLQS 393
           +K  +    +V  L+E      +       L AL+NLS     N  ++ +  G ++ L  
Sbjct: 278 SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 337

Query: 394 LAVPGDPMWT----EKSLAVLLNLAASAAGKEEMNST---PGLVSGLATVLDTGELIEQE 446
                    T    E    +L N+++  A  E+          +  L   L +  L    
Sbjct: 338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 397

Query: 447 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQ---RLLMLFREQRQR 503
            A   L+ L   N K  + +   G +  L ++  +        +    R LM  R  + +
Sbjct: 398 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457

Query: 504 D 504
           D
Sbjct: 458 D 458

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 65.8 bits (160), Expect = 1e-11
 Identities = 40/256 (15%), Positives = 78/256 (30%), Gaps = 43/256 (16%)

Query: 279 AQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS------------------- 319
           A+   + AL N+  +   +K       V+ LLE++ +   +                   
Sbjct: 98  ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPM 157

Query: 320 --------HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLD------- 364
                     A   L   LSF ++ +  +     +  + EL +   E     +       
Sbjct: 158 PAPVEHQICPAVCVLM-KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 216

Query: 365 ---ALHALYNLSTIPSNIPNLL--SAGIISGLQSLAVPGDPMWTEKSLAVLLNLA--ASA 417
              A  AL NL+         L    G +  L +          +   +VL NL+  A  
Sbjct: 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 276

Query: 418 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF-LLCNGNEKCCQMVLQEGVIPALV 476
             K+ +     + + +   L+  +    +  +S L+ L  +  E    +   +G +  LV
Sbjct: 277 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336

Query: 477 SISVNGSTRGRDKAQR 492
                 S         
Sbjct: 337 GTLTYRSQTNTLAIIE 352

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 60.0 bits (145), Expect = 9e-10
 Identities = 40/279 (14%), Positives = 82/279 (29%), Gaps = 63/279 (22%)

Query: 261 VVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN-- 318
           V +LL  L +   + +       +  L  ++ ++  +   M  +G +PLL +++  ++  
Sbjct: 34  VYSLLSMLGTH-DKDDM------SRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKD 85

Query: 319 -------------SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK----------- 354
                           A+ AL+  +    D K        +  L ++             
Sbjct: 86  SVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145

Query: 355 --------------GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDP 400
                               C   A+  L  LS    +   +   G +  +  L      
Sbjct: 146 HEPGMDQDKNPMPAPVEHQICP--AVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCE 203

Query: 401 MWTEKSLAVLLNLAASAAG------------KEEMNSTPGLVSGLATVLDTGELIEQEQA 448
           M+   +    + L   A              K  + S  G +  L   L +     Q+  
Sbjct: 204 MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 263

Query: 449 VSCLFLLCNGNEKCCQMVLQE-GVIPALVSISVNGSTRG 486
            S L  L    +   +  L+E G + AL+  ++      
Sbjct: 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  109 bits (273), Expect = 1e-25
 Identities = 56/279 (20%), Positives = 99/279 (35%), Gaps = 10/279 (3%)

Query: 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 280
           F+  L   EN   +      +  +   +          G V   +  L S   +     Q
Sbjct: 69  FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED----VQ 124

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDAK 337
           E    AL N+A ++   ++ +L   ++P L ++ S  N       A     NL       
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP 184

Query: 338 P-IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLA 395
           P     S  +  L  L           DA  AL  LS  P+  I  ++ AG+   L  L 
Sbjct: 185 PEFAKVSPCLNVLSWLLFVSDT-DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL 243

Query: 396 VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 455
           +  D      +L  + N+      + ++      +  L  +L + +   +++A   +  +
Sbjct: 244 MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303

Query: 456 CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494
             GN    Q V+   + PAL+SI      R R +A   +
Sbjct: 304 TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAI 342

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 92.6 bits (230), Expect = 3e-20
 Identities = 47/272 (17%), Positives = 102/272 (37%), Gaps = 9/272 (3%)

Query: 229 ENLGQKCNIVEQIRLLLKDDEEARVFT--GANGFVVALLRFLESAVCERNSYAQEIGAMA 286
           ++  Q+ +  ++ R LL  +    +       G V   + FL+    + N   Q   A  
Sbjct: 32  KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR---KENCTLQFESAWV 88

Query: 287 LFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDDAKPIIGSS 343
           L N+A  N+    +++ AG +P+  +++S+        A  AL          +  +   
Sbjct: 89  LTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDC 148

Query: 344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNL-LSAGIISGLQSLAVPGDPMW 402
           + +P L++L   +       +A+ AL NL    S  P     +  ++ L  L    D   
Sbjct: 149 NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDV 208

Query: 403 TEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKC 462
              +   L  L+     K +     G+   L  +L   +      A+  +  +  G++  
Sbjct: 209 LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQ 268

Query: 463 CQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494
            Q++L    + +L+ +  +     + +A   +
Sbjct: 269 TQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 60.7 bits (147), Expect = 6e-10
 Identities = 29/183 (15%), Positives = 64/183 (34%), Gaps = 12/183 (6%)

Query: 241 IRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 300
           +  L     +        G    L+  L       +         A+ N+   ++   ++
Sbjct: 216 LSYLSDGPNDKIQAVIDAGVCRRLVELLMHN----DYKVVSPALRAVGNIVTGDDIQTQV 271

Query: 301 MLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKGK 356
           +L    +  L  ++S+        A   +  N++  + A    +  ++  P L+ + +  
Sbjct: 272 ILNCSALQSLLHLLSSPKESIKKEACWTI-SNITAGNRAQIQTVIDANIFPALISILQ-T 329

Query: 357 TEHQCKLDALHALYNLSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 414
            E + + +A  A+ N ++  S   I  L+  G I  L  L    D    + +L  L N+ 
Sbjct: 330 AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENIL 389

Query: 415 ASA 417
              
Sbjct: 390 RLG 392

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  101 bits (255), Expect = 1e-24
 Identities = 47/241 (19%), Positives = 101/241 (41%), Gaps = 11/241 (4%)

Query: 259 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN 318
             +  + + L S     +   Q         +  + N   + ++ AG +P L +++S+ N
Sbjct: 12  SELPQMTQQLNSD----DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 319 S---HGAATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374
                 A  AL  N++   +     +  + A+P LV+L     E   + +AL AL N+++
Sbjct: 68  EQILQEALWAL-SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIAS 125

Query: 375 I-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGL 433
                I  ++ AG +  L  L    +    +++L  L N+A+    + +     G +  L
Sbjct: 126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185

Query: 434 ATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 493
             +L +      ++A+  L  + +G  +  Q V + G +  L  +  + + + + +AQ  
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245

Query: 494 L 494
           L
Sbjct: 246 L 246

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 92.4 bits (230), Expect = 3e-21
 Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 11/233 (4%)

Query: 229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF 288
           +++ ++ +   +   +L D  E        G + AL++ L S     N    +    AL 
Sbjct: 24  DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALS 79

Query: 289 NLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDA-KPIIGSSH 344
           N+A   N   + ++ AG +P L +++S+ N      A  AL  N++   +     +  + 
Sbjct: 80  NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS-NIASGGNEQIQAVIDAG 138

Query: 345 AVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWT 403
           A+P LV+L       Q   +AL AL N+++     I  ++ AG +  L  L    +    
Sbjct: 139 ALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 197

Query: 404 EKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 456
           +++L  L N+A+    +++     G +  L  +        Q++A   L  L 
Sbjct: 198 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 5/202 (2%)

Query: 297 NKELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDDAKPIIGSSHAVPFLVELC 353
           +         +P + + +++ +      A       LS  ++    +  + A+P LV+L 
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 354 KGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLN 412
               E Q   +AL AL N+++     I  ++ AG +  L  L    +    +++L  L N
Sbjct: 64  SSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 413 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI 472
           +A+    + +     G +  L  +L +      ++A+  L  + +G  +  Q V+  G +
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 182

Query: 473 PALVSISVNGSTRGRDKAQRLL 494
           PALV +  + + +   +A   L
Sbjct: 183 PALVQLLSSPNEQILQEALWAL 204

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 70.8 bits (174), Expect = 6e-14
 Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 12/178 (6%)

Query: 243 LLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELML 302
           +    +E+ +    A   + AL++ L S     N    +    AL N+A   N   + ++
Sbjct: 81  IASGGNEQIQAVIDAGA-LPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVI 135

Query: 303 AAGVIPLLEKMISNSNSHG---AATALYLNLS-FLDDAKPIIGSSHAVPFLVELCKGKTE 358
            AG +P L +++S+ N      A  AL  N++   ++    +  + A+P LV+L     E
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALS-NIASGGNEQIQAVIDAGALPALVQLLSSPNE 194

Query: 359 HQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415
            Q   +AL AL N+++        +  AG +  L+ L    +    +++   L  L +
Sbjct: 195 -QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score = 96.0 bits (239), Expect = 3e-24
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 69  PPEELRCPISLQLMYDPVIIASGQ-TYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYC 127
             +E   PI   LM DPV++ S + T +R  I + L     T P  +  L    + PN  
Sbjct: 19  ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNTE 77

Query: 128 VKGLIASWCEMN 139
           +K  I  W    
Sbjct: 78  LKEKIQRWLAER 89

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 98.2 bits (244), Expect = 8e-22
 Identities = 44/280 (15%), Positives = 100/280 (35%), Gaps = 11/280 (3%)

Query: 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 280
            +  + E +    +      +  +                V   ++ L +     +   +
Sbjct: 135 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVK 190

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDAK 337
           E    AL N+A ++   ++ +L    +  +  + +++       A   L  NL      +
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTL-SNLCRGKKPQ 249

Query: 338 P-IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLA 395
           P     S A+P L +L       +  +DA  A+  LS  P   I  ++   I   L  L 
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 308

Query: 396 VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 455
                +    +L  + N+      + ++    G++  L  +L + +   +++A   +  +
Sbjct: 309 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368

Query: 456 CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 495
             GN +  Q V+   +IP LV +      + + +A   + 
Sbjct: 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 86.6 bits (214), Expect = 4e-18
 Identities = 40/262 (15%), Positives = 91/262 (34%), Gaps = 11/262 (4%)

Query: 239 EQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-NNRN 297
                      + + ++     +  + + L S     +   Q    +    +    +   
Sbjct: 67  SDEEDESSVSADQQFYSQLQQELPQMTQQLNS----DDMQEQLSATVKFRQILSREHRPP 122

Query: 298 KELMLAAGVIPLLEKMISNSNSHG----AATALYLNLSFLDDAKPIIGSSHAVPFLVELC 353
            ++++ AGV+P L + +  +        AA AL    S       ++  + AVP  ++L 
Sbjct: 123 IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL 182

Query: 354 KGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLN 412
              +    +  A+ AL N++         +L    +  +  L     P     +   L N
Sbjct: 183 YTGSVEVKE-QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241

Query: 413 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI 472
           L      + + +     +  LA ++ + +      A   +  L +G ++  Q V+   + 
Sbjct: 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 301

Query: 473 PALVSISVNGSTRGRDKAQRLL 494
             LV +  + ST  +  A R +
Sbjct: 302 KRLVELLSHESTLVQTPALRAV 323

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 46/247 (18%), Positives = 90/247 (36%), Gaps = 21/247 (8%)

Query: 222 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQE 281
           L  L    +     +    I  L    +EA            L+  L       ++  Q 
Sbjct: 262 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE----STLVQT 317

Query: 282 IGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDAKP 338
               A+ N+   N+   ++++ AGV+P L  ++S+   +    A   +    +   +   
Sbjct: 318 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377

Query: 339 IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPN----LLSAGIISGLQSL 394
            +  ++ +P LV+L +   E++ K +A  A+ N S+     P+    L+S G I  L  L
Sbjct: 378 AVIDANLIPPLVKLLE-VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDL 436

Query: 395 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL-F 453
               D    E +L  L N+       +E             + +  + IE+   +  +  
Sbjct: 437 LEIADNRIIEVTLDALENILKMGEADKEARGLN--------INENADFIEKAGGMEKIFN 488

Query: 454 LLCNGNE 460
              N N+
Sbjct: 489 CQQNEND 495

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 96.6 bits (240), Expect = 2e-21
 Identities = 48/283 (16%), Positives = 106/283 (37%), Gaps = 14/283 (4%)

Query: 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 280
           F++ L + +    +      +  +     E        G + A +  L S     +++  
Sbjct: 105 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP----HAHIS 160

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLN----LSFL--- 333
           E    AL N+A + +  ++L++  G I  L  +++  +    A     N    LS L   
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 334 -DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGL 391
            + A P+      +P LV L       +   D+  A+  L+      I  ++  G++  L
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 392 QSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 451
             L    +      +L  + N+      + +     G ++   ++L   +   Q++A   
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339

Query: 452 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494
           +  +  G +   Q V+  G++P LV +      + + +A   +
Sbjct: 340 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI 382

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 73.5 bits (180), Expect = 5e-14
 Identities = 59/326 (18%), Positives = 111/326 (34%), Gaps = 20/326 (6%)

Query: 174 RSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQ 233
            + K +   +   ++    ++    DI +     + S        +D +  +N   NL  
Sbjct: 22  AAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWS-------VEDIVKGINS-NNLES 73

Query: 234 KCNIVEQIR-LLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 292
           +    +  R LL ++ +         G +   + FL        S  Q   A AL N+A 
Sbjct: 74  QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG---KTDCSPIQFESAWALTNIAS 130

Query: 293 NNNRNKELMLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDAKPIIGSSHAVPFL 349
             +   + ++  G IP    ++++ ++H    A  AL          + ++    A+  L
Sbjct: 131 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPL 190

Query: 350 VELCKGKTEHQCKLDALH-ALYNLSTIPSNIPNL----LSAGIISGLQSLAVPGDPMWTE 404
           + L             L    + LS +  N            I+  L  L    DP    
Sbjct: 191 LALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250

Query: 405 KSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQ 464
            S   +  L      + EM    G+V  L  +L   EL     A+  +  +  G ++  Q
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310

Query: 465 MVLQEGVIPALVSISVNGSTRGRDKA 490
            V+  G +    S+  N  T  + +A
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEA 336

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 72.7 bits (178), Expect = 9e-14
 Identities = 39/290 (13%), Positives = 95/290 (32%), Gaps = 24/290 (8%)

Query: 222 LNVLNEGENLGQK----CNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNS 277
           L +L   +          N+   +  L ++   A         +  L+R L       + 
Sbjct: 191 LALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH----NDP 246

Query: 278 YAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD 335
                   A+  L    N   E+++  GV+P L K++  +       A     N+    D
Sbjct: 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306

Query: 336 A-KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQS 393
                +  + A+     L      +  + +A   + N++      I  +++ G++  L  
Sbjct: 307 EQTQKVIDAGALAVFPSLLTNPKTN-IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365

Query: 394 LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST---PGLVSGLATVLDTGELIEQEQAVS 450
           +    D    +++   + N  +   G  E        G++  L  +L   +    +  + 
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSG--GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILD 423

Query: 451 CLFLLCN------GNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494
            +  +          EK   M+ + G +  + ++  + +      +  L+
Sbjct: 424 AISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 91.0 bits (225), Expect = 3e-19
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 69  PPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYC 127
            P+E   P+   +M DPVI+  S    +R  I+  L    ST P  +  L    +TPN  
Sbjct: 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLL-SDSTDPFNRMPLKLEDVTPNEE 946

Query: 128 VKGLIASWCE 137
           ++  I  + +
Sbjct: 947 LRQKILCFKK 956

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 82.7 bits (204), Expect = 1e-17
 Identities = 26/76 (34%), Positives = 37/76 (48%)

Query: 65  QMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 124
           +    P+ L   IS +LM +P I  SG TY+R  IE+ L       P T+  L    L P
Sbjct: 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260

Query: 125 NYCVKGLIASWCEMNG 140
           N  +K +I ++   NG
Sbjct: 261 NLAMKEVIDAFISENG 276

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 78.4 bits (194), Expect = 9e-17
 Identities = 36/203 (17%), Positives = 85/203 (41%), Gaps = 7/203 (3%)

Query: 297 NKELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFL-DDAKPIIGSSHAVPFLVEL 352
           +         +P + + +++ +      A   L   ++   ++    +  + A+P LV+L
Sbjct: 4   SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLS-QIASGGNEQIQAVIDAGALPALVQL 62

Query: 353 CKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL 411
                E   + +AL AL N+++     I  ++ AG +  L  L    +    +++L  L 
Sbjct: 63  LSSPNEQILQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121

Query: 412 NLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 471
           N+A+    + +     G +  L  +L +      ++A+  L  + +G  +  Q V + G 
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA 181

Query: 472 IPALVSISVNGSTRGRDKAQRLL 494
           +  L  +  + + + + +AQ  L
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEAL 204

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 11/180 (6%)

Query: 241 IRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 300
           +  +     E        G + AL++ L S     N    +    AL N+A   N   + 
Sbjct: 36  LSQIASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQA 91

Query: 301 MLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKGK 356
           ++ AG +P L +++S+ N      A  AL  N++   +     +  + A+P LV+L    
Sbjct: 92  VIDAGALPALVQLLSSPNEQILQEALWAL-SNIASGGNEQIQAVIDAGALPALVQLLSSP 150

Query: 357 TEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415
            E Q   +AL AL N+++        +  AG +  L+ L    +    +++   L  L +
Sbjct: 151 NE-QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 81.0 bits (199), Expect = 2e-16
 Identities = 40/234 (17%), Positives = 81/234 (34%), Gaps = 24/234 (10%)

Query: 263 ALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--- 319
             +++L S    ++   Q IGA  + +    +   K+ +   G I  L  ++ + N    
Sbjct: 6   KAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 320 HGAATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN 378
             AA AL  NL F     K      + +   V L +     + +      L+NLS+    
Sbjct: 62  QAAAGAL-RNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 379 IPNLLSAGIISGLQSLAVP---------------GDPMWTEKSLAVLLNLAASAAGKEEM 423
              L++  +      + +P                DP     +   L NL+++ AG++ M
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 424 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS 477
            +  GL+  L   +       +    S    +C  +    ++  +       + 
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 59.5 bits (143), Expect = 1e-09
 Identities = 35/296 (11%), Positives = 83/296 (28%), Gaps = 24/296 (8%)

Query: 223 NVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE--SAVCERNSYAQ 280
           N+  E  +     N    +R L   D   +     +G + +L+ +++   A    +  + 
Sbjct: 149 NMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSV 208

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKM-----------ISNSNSHGAATALYLN 329
           E     L NL+   +                              S+   +         
Sbjct: 209 ENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268

Query: 330 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPN------LL 383
                     +  S A+   + L     +         AL NL+     + +       L
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328

Query: 384 SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM--NSTPGLVSGLATVLDTGE 441
               +  +  L   G+        ++L N++        M     P +   L +      
Sbjct: 329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTS 388

Query: 442 LIE--QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGST-RGRDKAQRLL 494
             E     A   +  L     +  +      ++  ++++  + ++ +  + A+ LL
Sbjct: 389 NSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLL 444

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 10/163 (6%)

Query: 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVAL-LRFLESAVCERNSYA 279
           +LN++ + +           ++ L                +    L  +   +   NS  
Sbjct: 288 YLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDV 347

Query: 280 QEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG-------AATALYLNLSF 332
              GA  L N++ +      +M       +   + S++ +         +A     NL  
Sbjct: 348 VRSGASLLSNMSRHP-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA 406

Query: 333 LD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374
                     SS  +  ++ LC+     +    A   L ++ +
Sbjct: 407 SQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 70.4 bits (172), Expect = 3e-15
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 9/89 (10%)

Query: 70  PEELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHS-----TCPKT---QQKLPHL 120
                CPI+ + M  PV     G TYE   I + +           CP+       +   
Sbjct: 5   SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64

Query: 121 CLTPNYCVKGLIASWCEMNGVSVPDSPPD 149
            L  +  ++  I +  +         P  
Sbjct: 65  DLIQDEALRRAIENHNKKRHRHSESGPSS 93

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 73.8 bits (181), Expect = 4e-15
 Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 38/232 (16%)

Query: 261 VVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH 320
            V++L   +  +  R S A    A  + +     +  ++ +     I  L +++   N  
Sbjct: 13  AVSMLEA-DHMLPSRISAA----ATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67

Query: 321 ---GAATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP 376
                  AL  NL F D+  K  +   + VP L+++ K   + + K      L+NLS+  
Sbjct: 68  VQRAVCGAL-RNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126

Query: 377 SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATV 436
                +++  +++  +++ +P    W E        L                       
Sbjct: 127 KLKNLMITEALLTLTENIIIPF-SGWPEGDYPKANGLLDFDI------------------ 167

Query: 437 LDTGELIEQEQAVSCLFLLC-NGNEKCCQMVLQEGVIPALVSISVNGSTRGR 487
                         CL  +   G +    M   +G+I +LV          +
Sbjct: 168 --------FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQ 211

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 67.7 bits (165), Expect = 5e-13
 Identities = 44/234 (18%), Positives = 72/234 (30%), Gaps = 41/234 (17%)

Query: 233 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 292
           +       I+       EAR        ++ LL+ L+     +N   Q     AL NL  
Sbjct: 26  RISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV----QNEDVQRAVCGALRNLVF 81

Query: 293 NNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFL 349
            +N NK  +     +P L +++  +         T L  NLS  D  K ++  + A+  L
Sbjct: 82  EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM-ITEALLTL 140

Query: 350 VELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAV 409
            E                 +   S  P       +  +   +                  
Sbjct: 141 TENI---------------IIPFSGWPEGDYPKANGLLDFDIFYNVT-----------GC 174

Query: 410 LLNL-AASAAGKEEMNSTPGLVSGLATVLDTGELIEQ------EQAVSCLFLLC 456
           L N+ +A A G++ M    GL+  L   +       Q      E  V  L  L 
Sbjct: 175 LRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 76.8 bits (188), Expect = 8e-15
 Identities = 33/274 (12%), Positives = 85/274 (31%), Gaps = 15/274 (5%)

Query: 224 VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIG 283
           ++  G++   +    + +  L  D E           + AL+          N       
Sbjct: 386 LIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG----NQSCLYGV 441

Query: 284 AMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSS 343
                NL     + +        +P + ++   +  H        ++ F++    ++ + 
Sbjct: 442 VTTFVNLCNAYEKQEM-------LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE 494

Query: 344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWT 403
                L  L K ++    +      L  +  +      ++  G +  L  +A+ G     
Sbjct: 495 GITTALCALAKTESH-NSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGK 553

Query: 404 EKSLAVLLNLAASAAGKEEMNSTPGL--VSGLATVLDTG-ELIEQEQAVSCLFLLCNGNE 460
             +   L  +  +   +   +    L  +  L  +L      +E  +++  L  L + NE
Sbjct: 554 RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE 613

Query: 461 KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494
              Q +++E  +  +    +         A + L
Sbjct: 614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 54.5 bits (130), Expect = 8e-08
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 10/200 (5%)

Query: 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 280
            LN+L +     +    +  +  L   +E  R        V  +  +L       + Y  
Sbjct: 585 LLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME----DHLYLT 640

Query: 281 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDD--A 336
              A  L NL ++ +  K        +  L  +  + +  +  A       ++ +     
Sbjct: 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC 700

Query: 337 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL-STIPSNIPNLLSAGIISGLQSLA 395
           + I+  +  +  L  L    +    +   +  + N+ +        L    I+  L  L 
Sbjct: 701 EKILAIASWLDILHTLIANPSP-AVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLG 759

Query: 396 VPGDPMWTEKSLAVLLNLAA 415
              D    +        LAA
Sbjct: 760 QLPDDTRAKAREVATQCLAA 779

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 72.7 bits (177), Expect = 1e-13
 Identities = 49/279 (17%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 243 LLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELML 302
           L                 +  ++  L      R    +   A  L +L   N++ K  + 
Sbjct: 32  LDSLRKGGPPPPNWRQPELPEVIAMLGF----RLDAVKSNAAAYLQHLCYRNDKVKTDVR 87

Query: 303 AAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKT 357
               IP+L  ++ +       GA  AL  N+SF  D   K  I +   VP LV L +   
Sbjct: 88  KLKGIPVLVGLLDHPKKEVHLGACGAL-KNISFGRDQDNKIAIKNCDGVPALVRLLRKAR 146

Query: 358 EHQCKLDALHALYNLSTIPSNIPNLLSAGII----------SGLQSLAVPGDPMWTEKSL 407
           +          L+NLS+  S    ++   +           SG +            +  
Sbjct: 147 DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206

Query: 408 AVLLNLA--------ASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS---CLFLLC 456
           +VL N A          +  + ++    GLV  L  ++      +   +     C+ LL 
Sbjct: 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLR 266

Query: 457 NGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 495
           N + +  + + Q            N +     +   LL 
Sbjct: 267 NLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLF 305

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 62.3 bits (150), Expect = 2e-10
 Identities = 42/274 (15%), Positives = 88/274 (32%), Gaps = 26/274 (9%)

Query: 235 CNIVEQIRLLLKDDEEAR-VFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 293
            N    +R +  +  EAR      +G V AL+  +++ + +++S ++ +         ++
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 294 NNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC 353
              ++E+  A         + +N+ +                   ++     V   + L 
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSP------------ARGYELLFQPEVVRIYISLL 317

Query: 354 KGKTEHQCKLDALHALYNLSTIPSNIPN-----LLSAGIISGLQSLAVPGDPMWTEKSLA 408
           K          +  A+ NL              L     +S +  L         + +  
Sbjct: 318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASG 377

Query: 409 VLLNLAASAAGKEEMNST--PGLV----SGLATVLDTGELIEQEQAVSCLFLLCNGNEKC 462
            L NLA  A  KE +     P LV     G                ++ +  +   N + 
Sbjct: 378 ALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437

Query: 463 CQMVLQEGVIPALVSISVNG--STRGRDKAQRLL 494
            + + +   I  LV I+ +G  S +    A  +L
Sbjct: 438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVL 471

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 72  ELRCPISLQLMYDPVI-IASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 124
            + C IS ++   PV+   S   +E+  +E+++ D     P T + L    +  
Sbjct: 3   HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 55

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 6e-11
 Identities = 76/453 (16%), Positives = 141/453 (31%), Gaps = 106/453 (23%)

Query: 25  SPTIQCSFEDGVH--N-GNEHAFD---RQLSKLC---SFNFRPNNRRSGQMPLPPEELRC 75
           S  +QC  +  +   N  N ++ +     L KL      N+   +  S  + L    ++ 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 76  -----------PISLQLMYDPVIIASGQTYE------RICI---EKWLSDGHSTCPKTQQ 115
                         L L+   V   + + +       +I +    K ++D  S    T  
Sbjct: 233 ELRRLLKSKPYENCL-LVLLNV--QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 116 KLPHLC--LTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSEESTNSKSNEIV 173
            L H    LTP+  VK L+  + +       D P + L  N  RL++  E   S  + + 
Sbjct: 290 SLDHHSMTLTPDE-VKSLLLKYLDC---RPQDLPREVLTTNPRRLSIIAE---SIRDGLA 342

Query: 174 RSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQ 233
                K +    L  +  IE S    +  +   E        + +   L+V         
Sbjct: 343 TWDNWKHVNCDKL--TTIIESS----LNVLEPAEYR------KMFDR-LSVFPPSA---- 385

Query: 234 KCNIVEQ-IRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMAL-FNLA 291
             +I    + L+  D  ++ V    N      L        E+      I   ++   L 
Sbjct: 386 --HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-------VEKQPKESTISIPSIYLELK 436

Query: 292 VNNNRNKEL---MLAA----------GVIPLLE------------KMISNSNSHGAATAL 326
           V       L   ++             +IP               K I +         +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 327 YLNLSFLD-----DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPN 381
           +L+  FL+     D+     S   +  L +L   K  + C  D  +    ++ I   +P 
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERL-VNAILDFLPK 554

Query: 382 LLSAGIISG----LQ-SLAVPGDPMWTEKSLAV 409
           +    I S     L+ +L    + ++ E    V
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 7e-08
 Identities = 70/386 (18%), Positives = 127/386 (32%), Gaps = 84/386 (21%)

Query: 143 VPDSPPDSLDLNYWRLALSEESTN---SKSNEIVRSCKL------KEMKVVPLEVSGTIE 193
           V D P         +  LS+E  +      + +  + +L      K+ ++V   V   + 
Sbjct: 38  VQDMP---------KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV-EEVL 87

Query: 194 ESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNI-----VEQIR-LLLKD 247
              Y  + +    E    + +   Y +  + L     +  K N+       ++R  LL+ 
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 248 DEEARVFT-GANGF---VVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA 303
                V   G  G     VAL       VC  +   Q      +F L + N  + E +L 
Sbjct: 148 RPAKNVLIDGVLGSGKTWVAL------DVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 304 AGVIPLLEKMISNSNSHG-AATALYLNLSFLDDAKPIIGSSHAVP--FLV--ELCKGKT- 357
             +  LL ++  N  S    ++ + L +  +      +  S       LV   +   K  
Sbjct: 201 M-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 358 ---EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 414
                 CK+  L     L+T    + + LSA   + + SL      +  ++  ++LL   
Sbjct: 260 NAFNLSCKI--L-----LTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYL 311

Query: 415 ASAAGK--EEMNST-PGLVSGLATVLDTG----------------ELIEQEQAVSCLFLL 455
                    E+ +T P  +S +A  +  G                 +IE     S L +L
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-----SSLNVL 366

Query: 456 CNGNE--KCCQM--VLQEGV-IPALV 476
               E  K      V      IP ++
Sbjct: 367 -EPAEYRKMFDRLSVFPPSAHIPTIL 391

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 61/403 (15%), Positives = 112/403 (27%), Gaps = 144/403 (35%)

Query: 39  GNEHAFDRQLSKLCSFN--FRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASG----- 91
                +  Q  +L + N  F   N    Q   P  +LR  + L+L     ++  G     
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---PYLKLRQAL-LELRPAKNVLIDGVLGSG 162

Query: 92  ---------QTYERICIEK----WLSDGHSTCPKT----QQKLPHLCLTPNYCVKGLIAS 134
                     +Y+  C       WL+  +   P+T     QKL +  + PN+        
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWT------- 214

Query: 135 WCEMNGVSVPDSPPDSLDLNYWRLALSEESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEE 194
                  S  D            + L   S  ++   +++S   +   +V L V      
Sbjct: 215 -------SRSDHSS--------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----- 254

Query: 195 SEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLL--KDDEEAR 252
               + +           N F    +              C      ++LL  +  +   
Sbjct: 255 ----NAKAW---------NAF----NL------------SC------KILLTTRFKQVTD 279

Query: 253 VFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL-MLAAGVIPLLE 311
             + A    ++L       +             +L    ++  R ++L        P   
Sbjct: 280 FLSAATTTHISL-DHHSMTLTPDEV-------KSLLLKYLDC-RPQDLPREVLTTNPRRL 330

Query: 312 KMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALH---- 367
            +I+ S   G AT         D    II SS                   L+ L     
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESS-------------------LNVLEPAEY 371

Query: 368 -ALY-NLSTIP--SNIPNLLSAGIISGLQSLAVPGDPMWTEKS 406
             ++  LS  P  ++IP             L++    +W +  
Sbjct: 372 RKMFDRLSVFPPSAHIP----------TILLSL----IWFDVI 400

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 59.2 bits (142), Expect = 7e-10
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 65  QMPLPPEELRCPISLQLMYDPVIIAS-GQTYERICIEKWL-SDGHSTCPKT--QQKLPHL 120
           Q+     EL CPI+ +    P+I       ++R  I+ +L       CP+    Q +   
Sbjct: 174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233

Query: 121 CLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDL 153
               +  ++                    ++D+
Sbjct: 234 DFVRDPIMELRCKIAKMKESQEQDKRSSQAIDV 266

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 7/156 (4%)

Query: 222 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQE 281
           +    E    G +    + I    ++    +      G +  LLR L+    +     + 
Sbjct: 87  VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR---DACDTVRV 143

Query: 282 IGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKP 338
               A+  L           L      +L + +          +A  L   L    + K 
Sbjct: 144 KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG 203

Query: 339 IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374
            + S   V  LV L +           L AL +L T
Sbjct: 204 TLCSMGMVQQLVALVR-TEHSPFHEHVLGALCSLVT 238

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 4/190 (2%)

Query: 286 ALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGS 342
            L +L  N +   +    +G+  L+ + +    +     AA  +      +   +  +  
Sbjct: 63  LLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG 122

Query: 343 SHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPM 401
             A+  L+ L         ++ AL A+  L     + +   L     S L          
Sbjct: 123 LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK 182

Query: 402 WTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEK 461
              KS  +L NL       +    + G+V  L  ++ T      E  +  L  L     +
Sbjct: 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ 242

Query: 462 CCQMVLQEGV 471
             +   +  +
Sbjct: 243 GVRECREPEL 252

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 69  PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCV 128
              +  CPI L  + + V    G  + + CI K + D    CP   + L    L P+   
Sbjct: 15  LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 129 KGLIAS---WCEMNG 140
           K  I S    C   G
Sbjct: 75  KREILSLMVKCPNEG 89

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 70  PEELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCV 128
            E  RC I ++ + D  +     +     CI +WL++  + CP  +  L    L      
Sbjct: 20  AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79

Query: 129 KGLI 132
           + + 
Sbjct: 80  EEVT 83

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 63  SGQMPLPPEELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSD-GHSTCPKTQQKLP 118
           SG+    P+EL C I   +M D V+I   G +Y   CI   L +    TCP   Q   
Sbjct: 6   SGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 70  PEELRCPISLQLMYDPVIIAS-GQTYERICIEK-WLSDGHSTCPKTQQKLPHL-CLTPNY 126
           P+EL C I   +M D V+I   G +Y   CI    L     TCP   Q       L  N 
Sbjct: 11  PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANK 70

Query: 127 CVKGLI 132
            ++  +
Sbjct: 71  FLRQAV 76

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWL--SDGHSTCPKTQQKLPHLCLTPNYCV 128
           + L CPI L+L+ +PV       + + C+ K L    G S CP  +  +    L  +   
Sbjct: 20  KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79

Query: 129 KGLI 132
             L+
Sbjct: 80  SQLV 83

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 8/49 (16%), Positives = 17/49 (34%)

Query: 69  PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 117
             ++ +C     ++  P     G  +   C+   LS     C   Q+ +
Sbjct: 12  VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL-PHLCLTPNYCVK 129
           + + C I   ++ DPV  +    + RICI + L    S CP  +    P    +P     
Sbjct: 22  KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFL 81

Query: 130 GLIAS 134
            ++ S
Sbjct: 82  NILNS 86

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 18/66 (27%), Positives = 26/66 (39%)

Query: 69  PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCV 128
              +  CPI L  + + V    G  + + CI K + D    CP   + L    L P+   
Sbjct: 15  LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 129 KGLIAS 134
           K  I S
Sbjct: 75  KREILS 80

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH-LCLTPNYCVK 129
           E  +C    +L++ P+         + C+++       +CP  +  L     +  N  ++
Sbjct: 51  ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQ 110

Query: 130 GLI 132
            ++
Sbjct: 111 TVL 113

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 126
               C I LQ    PV +     +  +C++     G   C   +Q++P   L    
Sbjct: 14  TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPEDFLDSGP 68

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL-PHLCLTPNYCVK 129
           +   C    +L+Y PV         + C+++       +CP  +  L  +  + PN  ++
Sbjct: 77  QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQ 136

Query: 130 GLI 132
            L+
Sbjct: 137 TLL 139

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 70  PEELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCV 128
            + LRC I  +     +II      Y  +CI K+LS   + CP     +    L  N  +
Sbjct: 20  DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRIL 78

Query: 129 KGLIASW 135
             L+ S 
Sbjct: 79  DELVKSL 85

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 45.4 bits (107), Expect = 8e-06
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 71  EELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCPKTQQKL-PHLCLTPNYCV 128
            EL CPI L ++ + +        +   CI   L  G+  CP  ++KL     L P+   
Sbjct: 53  SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNF 112

Query: 129 KGLIA 133
             LI+
Sbjct: 113 DALIS 117

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 9/43 (20%), Positives = 13/43 (30%)

Query: 69  PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCP 111
              +  C     ++  P     G  Y   C+   LS G   C 
Sbjct: 28  LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCA 70

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 60  NRRSGQMPLPPEELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCPK 112
           +  SG +      + C I    + D   I     T+ + CI +      + CPK
Sbjct: 3   SGSSGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPK 55

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 71  EELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCP----KTQQKLPHLCLTPN 125
             L C +      D   I     ++ + CI ++L +    CP    +  +  P L +  +
Sbjct: 14  PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL-ETSKYCPICDVQVHKTRPLLNIRSD 72

Query: 126 YCVKGLI 132
             ++ ++
Sbjct: 73  KTLQDIV 79

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWL-----SDGHSTCPKTQQKLPHLCLTPN 125
           EE+ CPI L+L+ +PV      ++ R CI         +DG   CP  +   P   L PN
Sbjct: 18  EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77

Query: 126 YCVKGLI 132
             V  ++
Sbjct: 78  LHVANIV 84

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 42.0 bits (98), Expect = 8e-05
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCP--KTQQKLPHLCLTPNYCV 128
            EL+C I  +   + V +    ++   CI +W+      CP  +   K     L  + C+
Sbjct: 63  NELQCIICSEYFIEAVTLNCAHSFCSYCINEWM-KRKIECPICRKDIKSKTYSLVLDNCI 121

Query: 129 KGLIASWCE 137
             ++ +   
Sbjct: 122 NKMVNNLSS 130

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 71  EELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
           + LRC     ++ +PV +      +   C+   +    + CP          L  N  + 
Sbjct: 21  KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLD 77

Query: 130 GLIASWCEM 138
            +I    ++
Sbjct: 78  SMIQLCSKL 86

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCP 111
            E +C I ++++ +PV +    T  + C +  +      CP
Sbjct: 14  SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCP 54

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWL--SDGHSTCP 111
           EE+ CPI L ++  PV I  G  +   CI +    S G   CP
Sbjct: 19  EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWL--SDGHSTCP 111
           EE+ CPI L ++  PV I  G  +   CI +    S G   CP
Sbjct: 19  EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWLSD------GHSTCPKTQQKLPHLCLTP 124
           EE+ CPI L+L+ +P+ +  G +  R CI     +      G S+CP          L  
Sbjct: 11  EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70

Query: 125 NYCVKGLI 132
           N  +  ++
Sbjct: 71  NQHLANIV 78

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCP 111
            E  C + L+ + +PVII  G  + + CI +W  D      CP
Sbjct: 14  VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCP 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	565
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.95
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.95
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.95
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.95
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.94
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.94
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.94
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.93
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.92
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.92
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.91
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.9
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.89
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.88
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.87
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.86
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.86
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.86
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.86
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.86
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.86
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.84
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.8
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.78
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.78
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.77
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.75
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.74
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.7
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.64
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.63
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.5
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.49
3grl_A	651	General vesicular transport factor P115; vesicle t	99.47
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.47
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.41
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.37
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.37
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.36
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.36
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.36
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.35
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.35
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.34
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.34
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.33
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.33
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.32
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.32
3grl_A	651	General vesicular transport factor P115; vesicle t	99.31
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.28
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.23
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.22
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.2
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.19
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.19
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.19
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.17
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.1
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.09
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.08
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.07
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.05
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.0
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.0
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.99
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.99
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.94
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.81
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.8
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.79
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.79
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.78
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.78
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.77
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.74
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.7
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.69
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.69
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.67
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.67
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.65
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.65
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.64
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.59
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.58
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.55
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.54
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.52
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.51
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.49
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.45
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.43
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.39
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.3
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.22
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.21
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.15
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.11
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.11
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.1
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.1
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.09
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.08
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.07
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.03
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.96
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.94
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.94
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.93
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.92
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.91
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.82
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.79
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.71
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.7
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.66
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.55
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.53
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.31
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.04
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.99
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.99
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	96.96
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.95
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	96.86
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	96.71
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.62
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.52
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.52
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.46
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	96.41
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.25
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.14
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	96.1
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.02
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.79
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	95.79
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	95.57
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	95.43
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	95.23
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.7
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	94.39
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	94.23
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.22
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	93.07
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	92.57
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	92.09
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	92.0
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	90.74
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	90.59
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	89.72
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	89.16
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	88.73
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	88.6
2x19_B	963	Importin-13; nuclear transport, protein transport;	88.32
3nw0_A	238	Non-structural maintenance of chromosomes element	87.25
2x1g_F	971	Cadmus; transport protein, developmental protein,	87.21
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	85.98
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	85.85
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	84.85
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	83.74
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	82.87
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	81.79
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	80.01

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.7e-31  Score=279.09  Aligned_cols=270  Identities=19%  Similarity=0.178  Sum_probs=235.4

Q ss_pred             HHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc-------cCCCHHHHHHHHHHHHHhhccCchhhHHHHhc
Q 008437          232 GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFNLAVNNNRNKELMLAA  304 (565)
Q Consensus       232 ~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~-------~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~  304 (565)
                      ..++.|+++|.+++.+ +++|..|++.|+++.|+.+|....       +..++.+|+.|+++|.||+..++.+|..+...
T Consensus        47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            4456899999999964 789999999999999999996321       11246799999999999997766688888654


Q ss_pred             -CchHHHHHHhcCCc--HHHHHHHHHHHhcCC--CCCchhhccCCchHHHHHHh-cCCCCHHHHHHHHHHHHHhcc-CCC
Q 008437          305 -GVIPLLEKMISNSN--SHGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELC-KGKTEHQCKLDALHALYNLST-IPS  377 (565)
Q Consensus       305 -G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~--~~~k~~I~~~g~i~~Lv~lL-~~~~~~~~~~~Al~aL~nLs~-~~~  377 (565)
                       |+||.|+.+|++++  .++.|+++|.||+..  +++|..|.+.|+||+||++| +++ +..+++.|+.+|+||+. +++
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~  204 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTE  204 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChh
Confidence             66999999999874  467899999999985  46899999999999999975 556 88999999999999998 668


Q ss_pred             ChHHHH-HcCchHHHhhccCCCCh----HHHHHHHHHHHHHhc----CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHH
Q 008437          378 NIPNLL-SAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA  448 (565)
Q Consensus       378 nk~~iv-~~G~v~~Lv~Ll~~~~~----~~~e~al~~L~nLa~----~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~A  448 (565)
                      |+..++ ..|+|+.|++++.+++.    .+++.|+++|.||+.    +++++..+++. |+++.|+++|.+++..++++|
T Consensus       205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A  283 (354)
T 3nmw_A          205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSLTIVSNA  283 (354)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT-THHHHHHHHTTCSCHHHHHHH
T ss_pred             hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc-CCHHHHHHHHcCCChHHHHHH
Confidence            899998 69999999998876543    589999999999996    88899888886 999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcccC
Q 008437          449 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD  504 (565)
Q Consensus       449 v~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~~  504 (565)
                      +++|++|+..+.+.++.+.++|+||.|+.|+.++++++++.|..+|++|...++..
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999888888999999999999999999999999999999999999764443

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.97  E-value=1.7e-30  Score=279.59  Aligned_cols=267  Identities=19%  Similarity=0.177  Sum_probs=233.1

Q ss_pred             HHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc-------cCCCHHHHHHHHHHHHHhhccCchhhHHHHh-cC
Q 008437          234 KCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFNLAVNNNRNKELMLA-AG  305 (565)
Q Consensus       234 q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~-------~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~-~G  305 (565)
                      +++|+++|.+++ .++++|..|.+.|++++|+.+|....       +..++.+|+.|+++|.||+.+++.++..+.. .|
T Consensus       165 ~~qAv~aL~nls-~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G  243 (458)
T 3nmz_A          165 ICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  243 (458)
T ss_dssp             THHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence            458999999997 45889999999999999999995321       1124678999999999999766668877765 46


Q ss_pred             chHHHHHHhcCCc--HHHHHHHHHHHhcCC--CCCchhhccCCchHHHHHHh-cCCCCHHHHHHHHHHHHHhcc-CCCCh
Q 008437          306 VIPLLEKMISNSN--SHGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELC-KGKTEHQCKLDALHALYNLST-IPSNI  379 (565)
Q Consensus       306 ~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~--~~~k~~I~~~g~i~~Lv~lL-~~~~~~~~~~~Al~aL~nLs~-~~~nk  379 (565)
                      +||.|+.+|.+++  .++.|+++|.||+..  +++|..|.+.|+|++||++| +++ +..+++.|+.+|+||+. +++|+
T Consensus       244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~~~nk  322 (458)
T 3nmz_A          244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENK  322 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCHHHH
Confidence            6999999999874  467899999999985  46889999999999999975 555 88999999999999998 77899


Q ss_pred             HHHH-HcCchHHHhhccCCCCh----HHHHHHHHHHHHHhc----CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437          380 PNLL-SAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS  450 (565)
Q Consensus       380 ~~iv-~~G~v~~Lv~Ll~~~~~----~~~e~al~~L~nLa~----~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~  450 (565)
                      ..++ .+|+|+.|+.++..++.    .+++.|+++|+||+.    +++++..+++. |+++.|+.+|.+++..++++|++
T Consensus       323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~-G~i~~Lv~LL~~~~~~v~~~A~~  401 (458)
T 3nmz_A          323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSLTIVSNACG  401 (458)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHSSCSCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc-ccHHHHHHHHcCCChHHHHHHHH
Confidence            9998 79999999998766543    489999999999995    88889898886 99999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhccc
Q 008437          451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR  503 (565)
Q Consensus       451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~  503 (565)
                      +|++|+..+.+.++.+.++|+||.|+.|+.+++.++++.|..+|++|...++.
T Consensus       402 aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~  454 (458)
T 3nmz_A          402 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  454 (458)
T ss_dssp             HHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence            99999988888899999999999999999999999999999999999866433

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=1.1e-29  Score=274.63  Aligned_cols=277  Identities=20%  Similarity=0.171  Sum_probs=235.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .++.++..|.++ ++++|..|+..|++++..++.++..+++.|+||.|+.+|.+    +++.+|+.|+++|.||+..+++
T Consensus         3 ~l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~   77 (457)
T 1xm9_A            3 TIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTT   77 (457)
T ss_dssp             CHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHH
T ss_pred             CHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHH
Confidence            367899999998 89999999999999998888889899999999999999987    6889999999999999976689


Q ss_pred             hhHHHHhcCchHHHHHHhc-CCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhc--------CC-------CC
Q 008437          297 NKELMLAAGVIPLLEKMIS-NSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK--------GK-------TE  358 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~-s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~--------~~-------~~  358 (565)
                      +|..|+++|+||.|+.+|. +++  .++.|+++|.||+..+++|..|.+ |++|+|+++|.        ++       .+
T Consensus        78 ~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~  156 (457)
T 1xm9_A           78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD  156 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred             HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence            9999999999999999998 653  468899999999999999999998 99999999993        22       14


Q ss_pred             HHHHHHHHHHHHHhccCCCChHHHHHc-CchHHHhhccCC------CChHHHHHHHHHHHHHhcCc--------------
Q 008437          359 HQCKLDALHALYNLSTIPSNIPNLLSA-GIISGLQSLAVP------GDPMWTEKSLAVLLNLAASA--------------  417 (565)
Q Consensus       359 ~~~~~~Al~aL~nLs~~~~nk~~iv~~-G~v~~Lv~Ll~~------~~~~~~e~al~~L~nLa~~~--------------  417 (565)
                      ..+.++|+++|+|||.+++++..+++. |+++.|+.++.+      .+..+++.++.+|.||+...              
T Consensus       157 ~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~  236 (457)
T 1xm9_A          157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN  236 (457)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence            566779999999999988899999998 999999997754      34567899999999997421              


Q ss_pred             -------------------------------------ccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCC
Q 008437          418 -------------------------------------AGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGN  459 (565)
Q Consensus       418 -------------------------------------~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~  459 (565)
                                                           .+...+.. .++++.|+.+|.. .++..+|.|+++|++||.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~  315 (457)
T 1xm9_A          237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASK  315 (457)
T ss_dssp             C----------------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred             cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence                                                 11112222 3678899999976 47999999999999999865


Q ss_pred             hHH-----HHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          460 EKC-----CQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       460 ~~~-----~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      ...     +..+.++|++|.|+.|+.++++++++.|.++|++|...
T Consensus       316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~  361 (457)
T 1xm9_A          316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence            422     22344689999999999999999999999999999864

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=4.4e-29  Score=274.66  Aligned_cols=280  Identities=18%  Similarity=0.148  Sum_probs=234.6

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc-C
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-N  294 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~-~  294 (565)
                      ..++.||.+|.++ +.++|.+|+..|++++..++++|..+++.|+||.||.+|.+    .+..+|+.|+++|.||+.+ +
T Consensus        48 ~~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s----~~~~vq~~Aa~AL~nLa~~~~  122 (584)
T 3l6x_A           48 PELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH----PKKEVHLGACGALKNISFGRD  122 (584)
T ss_dssp             CCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC----SSHHHHHHHHHHHHHHTSSSC
T ss_pred             ccHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC----CCHHHHHHHHHHHHHHHccCC
Confidence            3689999999988 89999999999999998899999999999999999999988    7899999999999999974 5


Q ss_pred             chhhHHHHhcCchHHHHHHhcCC-c--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhc-----------------
Q 008437          295 NRNKELMLAAGVIPLLEKMISNS-N--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK-----------------  354 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~-~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~-----------------  354 (565)
                      ++||..|+++|+|+.|+.+|.++ +  .+++|+++|++||.++++|..|++ ++|++|+++|.                 
T Consensus       123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~  201 (584)
T 3l6x_A          123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPR  201 (584)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccc
Confidence            88999999999999999999874 3  368899999999999999999985 67999999872                 


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCC-ChHHHHHc-CchHHHhhccCC------CChHHHHHHHHHHHHHhcCcccHH-----
Q 008437          355 GKTEHQCKLDALHALYNLSTIPS-NIPNLLSA-GIISGLQSLAVP------GDPMWTEKSLAVLLNLAASAAGKE-----  421 (565)
Q Consensus       355 ~~~~~~~~~~Al~aL~nLs~~~~-nk~~iv~~-G~v~~Lv~Ll~~------~~~~~~e~al~~L~nLa~~~~~r~-----  421 (565)
                      +..+..++++|+++|+||+.+.+ +|..+++. |+|+.|+.++.+      .+...++.|+++|+||+...+...     
T Consensus       202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~  281 (584)
T 3l6x_A          202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER  281 (584)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred             ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence            11257899999999999999775 58888885 667899997643      466789999999999997521110     


Q ss_pred             ---H--------Hhc---------CCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCCh----HHHHHHHhCCcHHHHH
Q 008437          422 ---E--------MNS---------TPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNE----KCCQMVLQEGVIPALV  476 (565)
Q Consensus       422 ---~--------i~~---------~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~----~~~~~v~~~G~v~~Lv  476 (565)
                         .        ...         ++++|+.|+.+|.. .++.++|+|+++|++||....    ..+..+.++|++|.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv  361 (584)
T 3l6x_A          282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA  361 (584)
T ss_dssp             --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence               0        011         12446678889864 689999999999999998652    2344555679999999


Q ss_pred             HhhhcCChhHHHHHHHHHHHHHhhc
Q 008437          477 SISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       477 ~L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      .|+..+++.+++.|..+|++|....
T Consensus       362 ~LL~s~~~~v~~~A~~aL~nLs~~~  386 (584)
T 3l6x_A          362 DLLTNEHERVVKAASGALRNLAVDA  386 (584)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCCh
Confidence            9999999999999999999999653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=7.6e-28  Score=258.94  Aligned_cols=281  Identities=15%  Similarity=0.102  Sum_probs=238.5

Q ss_pred             hHHHHHHHHHhcCC-----------CHHHHHHHHHHHHHHhccCccchhhhhccCCH----------HHHHHHhcccccC
Q 008437          216 ERYQDFLNVLNEGE-----------NLGQKCNIVEQIRLLLKDDEEARVFTGANGFV----------VALLRFLESAVCE  274 (565)
Q Consensus       216 e~i~~ll~~L~s~~-----------~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i----------~~Lv~lL~s~~~s  274 (565)
                      .-++.||+.|....           +.+.|.+|+++|.+++...++.....++.|++          +.++++|.+....
T Consensus        70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  149 (458)
T 3nmz_A           70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG  149 (458)
T ss_dssp             TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence            34678899998631           37999999999999999888888888888888          7777888764211


Q ss_pred             CC---HHHH-------HHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcC-------------CcHHHHHHHHHHHhc
Q 008437          275 RN---SYAQ-------EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISN-------------SNSHGAATALYLNLS  331 (565)
Q Consensus       275 ~~---~~~q-------~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s-------------~~~~~~A~aaL~nLs  331 (565)
                      .+   ..++       -+|+++|.|++. ++++|..|++.|++++|+.+|..             ...+.+|+++|.||+
T Consensus       150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa  228 (458)
T 3nmz_A          150 MDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT  228 (458)
T ss_dssp             SCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence            11   0033       389999999985 68999999999999999999952             123577999999999


Q ss_pred             CCCC-Cchhhcc-CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC--CCChHHHHHcCchHHHhhc-cCCCChHHHHHH
Q 008437          332 FLDD-AKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNLSTI--PSNIPNLLSAGIISGLQSL-AVPGDPMWTEKS  406 (565)
Q Consensus       332 ~~~~-~k~~I~~-~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~--~~nk~~iv~~G~v~~Lv~L-l~~~~~~~~e~a  406 (565)
                      ..++ +|..+.. .|+||.|+++|+++ ++++++.|+++|.||+..  +++|..++++|+|+.|+++ +..++..+++.+
T Consensus       229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A  307 (458)
T 3nmz_A          229 FGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV  307 (458)
T ss_dssp             TTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred             CCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence            8765 7777754 56799999999998 999999999999999974  4689999999999999995 666788999999


Q ss_pred             HHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCH----HHHHHHHHHHHHhhc---CChHHHHHHHhCCcHHHHHHh
Q 008437          407 LAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGEL----IEQEQAVSCLFLLCN---GNEKCCQMVLQEGVIPALVSI  478 (565)
Q Consensus       407 l~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~----~~~e~Av~~L~~Lc~---~~~~~~~~v~~~G~v~~Lv~L  478 (565)
                      +.+|+||+. +++++..|+...|+++.|+++|...++    .++++|+++|++|+.   .+++.++.+.+.|++|.|+.+
T Consensus       308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L  387 (458)
T 3nmz_A          308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH  387 (458)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence            999999999 878999998556999999999987654    489999999999997   677789999999999999999


Q ss_pred             hhcCChhHHHHHHHHHHHHH
Q 008437          479 SVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       479 ~~~~s~~~k~~A~~lL~~L~  498 (565)
                      +.+++..+++.|..+|.+|.
T Consensus       388 L~~~~~~v~~~A~~aL~nLa  407 (458)
T 3nmz_A          388 LKSHSLTIVSNACGTLWNLS  407 (458)
T ss_dssp             SSCSCHHHHHHHHHHHHHHH
T ss_pred             HcCCChHHHHHHHHHHHHHH
Confidence            99999999999999999998

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.95  E-value=1.6e-27  Score=257.78  Aligned_cols=276  Identities=14%  Similarity=0.138  Sum_probs=237.5

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhc-ccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE-SAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      ++++.|+.+|.++ +.++|..|+++|++|+..++++|..|++.|+||.|+++|. +    .+..+++.|+++|.||+.+ 
T Consensus        44 g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~-  117 (457)
T 1xm9_A           44 GGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSST-  117 (457)
T ss_dssp             THHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTS-
T ss_pred             CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcC-
Confidence            5789999999987 9999999999999999887899999999999999999998 5    6889999999999999965 


Q ss_pred             chhhHHHHhcCchHHHHHHhc--------CCc--HH--------HHHHHHHHHhcCCCCCchhhccC-CchHHHHHHhcC
Q 008437          295 NRNKELMLAAGVIPLLEKMIS--------NSN--SH--------GAATALYLNLSFLDDAKPIIGSS-HAVPFLVELCKG  355 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~--------s~~--~~--------~~A~aaL~nLs~~~~~k~~I~~~-g~i~~Lv~lL~~  355 (565)
                      +++|..+++ |++|.|+.+|.        ++.  .+        .+|+++|.||+..++++..+.+. |++++|+.+|++
T Consensus       118 ~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~  196 (457)
T 1xm9_A          118 DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN  196 (457)
T ss_dssp             SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred             HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence            789999999 99999999993        221  12        37999999999888888899887 999999988863


Q ss_pred             C-------------------------------------------------------------------------------
Q 008437          356 K-------------------------------------------------------------------------------  356 (565)
Q Consensus       356 ~-------------------------------------------------------------------------------  356 (565)
                      +                                                                               
T Consensus       197 ~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (457)
T 1xm9_A          197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS  276 (457)
T ss_dssp             HHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGG
T ss_pred             hccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHH
Confidence            1                                                                               


Q ss_pred             -------------------CCHHHHHHHHHHHHHhccCCCCh-----HHHH-HcCchHHHhhccCCCChHHHHHHHHHHH
Q 008437          357 -------------------TEHQCKLDALHALYNLSTIPSNI-----PNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLL  411 (565)
Q Consensus       357 -------------------~~~~~~~~Al~aL~nLs~~~~nk-----~~iv-~~G~v~~Lv~Ll~~~~~~~~e~al~~L~  411 (565)
                                         .++..++.|+++|.||+......     ..++ ++|++|.|++|+.+++..+++.|+++|.
T Consensus       277 ~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~  356 (457)
T 1xm9_A          277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS  356 (457)
T ss_dssp             GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHH
Confidence                               02456677899999999765432     2234 6899999999999999999999999999


Q ss_pred             HHhcCcccHHHHhcCCCCHHHHHHHhhcCC------HHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC-Ch
Q 008437          412 NLAASAAGKEEMNSTPGLVSGLATVLDTGE------LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG-ST  484 (565)
Q Consensus       412 nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s------~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~-s~  484 (565)
                      ||+.+.+.+..|..  ++++.|+++|..++      +++...++.+|.+|...+.+....+.+.|+++.|+.|+.++ ++
T Consensus       357 nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~  434 (457)
T 1xm9_A          357 NMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP  434 (457)
T ss_dssp             HHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH
T ss_pred             HHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH
Confidence            99999988887765  79999999998764      36788999999999988888888888999999999999999 99


Q ss_pred             hHHHHHHHHHHHHHhh
Q 008437          485 RGRDKAQRLLMLFREQ  500 (565)
Q Consensus       485 ~~k~~A~~lL~~L~~~  500 (565)
                      +++++|..+|..+-.+
T Consensus       435 ~i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          435 KAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHHHHHcc
Confidence            9999999999877644

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.95  E-value=6.8e-27  Score=256.20  Aligned_cols=279  Identities=16%  Similarity=0.199  Sum_probs=247.0

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.||+.|...+++++|.+|+++|.+++..+++++..+++.|+||.|+.+|.+    ++..+++.|+++|.||+.+++
T Consensus       100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s----~~~~v~e~A~~aL~nLa~d~~  175 (510)
T 3ul1_B          100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGDGS  175 (510)
T ss_dssp             THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCH
Confidence            4688999999876578999999999999999999999999999999999999988    789999999999999997777


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH-------HHHHHHHHHHhcCCCCCchhhc-cCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDAKPIIG-SSHAVPFLVELCKGKTEHQCKLDALH  367 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~-------~~~A~aaL~nLs~~~~~k~~I~-~~g~i~~Lv~lL~~~~~~~~~~~Al~  367 (565)
                      .++..+.+.|+++.|+.+|..++.       ...++++|.+++........+. ..|++|.|+++|.++ +.+++..|++
T Consensus       176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~  254 (510)
T 3ul1_B          176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCW  254 (510)
T ss_dssp             HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHH
Confidence            889999999999999999987531       3568999999988765544443 368999999999998 9999999999


Q ss_pred             HHHHhccCCCCh-HHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc-cHHHHhcCCCCHHHHHHHhhcCCHHHH
Q 008437          368 ALYNLSTIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQ  445 (565)
Q Consensus       368 aL~nLs~~~~nk-~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~-~r~~i~~~~g~v~~Lv~lL~~~s~~~~  445 (565)
                      +|.+|+....++ ..+++.|+++.|+.++.+.+..++..++.+|.||+...+ .+..+++. |+++.|+.+|.+.++.++
T Consensus       255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~-g~l~~L~~LL~~~~~~v~  333 (510)
T 3ul1_B          255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA-GALAVFPSLLTNPKTNIQ  333 (510)
T ss_dssp             HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TGGGGCC-CTTCSSHHHH
T ss_pred             HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhc-cchHHHHHHhcCCCHHHH
Confidence            999999877654 556689999999999999999999999999999987654 45566665 999999999999999999


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          446 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       446 e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      +.|+++|.+|+.++...+..+.+.|++|.|+.++.+++..+|+.|+.+|.+|...
T Consensus       334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~  388 (510)
T 3ul1_B          334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  388 (510)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence            9999999999999998899999999999999999999999999999999998754

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.95  E-value=1.5e-26  Score=254.59  Aligned_cols=279  Identities=16%  Similarity=0.203  Sum_probs=248.2

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.||..|....++++|..|+++|.+++..+++.+..+++.|+||.|+.+|.+    .+..+++.|+++|.||+.+++
T Consensus       119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s----~~~~v~e~A~~aL~nLa~~~~  194 (529)
T 3tpo_A          119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGAGS  194 (529)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhccCH
Confidence            5678999999876579999999999999999888899999999999999999988    789999999999999997778


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCc-------HHHHHHHHHHHhcCCCCCchhh-ccCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSN-------SHGAATALYLNLSFLDDAKPII-GSSHAVPFLVELCKGKTEHQCKLDALH  367 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~-------~~~~A~aaL~nLs~~~~~k~~I-~~~g~i~~Lv~lL~~~~~~~~~~~Al~  367 (565)
                      .++..+++.|+++.|+.+|..+.       ....++++|.+++........+ ...|++|.|+++|.++ +++++.+|++
T Consensus       195 ~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~  273 (529)
T 3tpo_A          195 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCW  273 (529)
T ss_dssp             HHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHH
Confidence            89999999999999999998653       1356899999998876544444 3468999999999999 9999999999


Q ss_pred             HHHHhccCCCC-hHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhcCCHHHH
Q 008437          368 ALYNLSTIPSN-IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQ  445 (565)
Q Consensus       368 aL~nLs~~~~n-k~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~~s~~~~  445 (565)
                      +|.+|+....+ ...+++.|+++.|+.++.+.+..++..++.+|.||+... +.+..++.. |+++.|+.+|.+.++.++
T Consensus       274 aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~-g~l~~L~~LL~~~~~~i~  352 (529)
T 3tpo_A          274 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA-GALAVFPSLLTNPKTNIQ  352 (529)
T ss_dssp             HHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TGGGGHHHHTTCSSHHHH
T ss_pred             HHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhc-ccHHHHHHHHcCCCHHHH
Confidence            99999987754 455678999999999999999999999999999998754 455566665 999999999999999999


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          446 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       446 e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      +.|+++|.+|+.++......+.+.|++|.|+.++.+++..++..|+++|.+|...
T Consensus       353 ~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~  407 (529)
T 3tpo_A          353 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG  407 (529)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999998899999999999999999999999999999999998754

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=1.3e-26  Score=263.07  Aligned_cols=278  Identities=15%  Similarity=0.170  Sum_probs=243.4

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-----------------------------ch---hhhhccCCHHH
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-----------------------------AR---VFTGANGFVVA  263 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-----------------------------~r---~~i~~~G~i~~  263 (565)
                      ..++.||.+|++. +..++..|++.|.+++...++                             ++   ..+++.|++|.
T Consensus       421 g~Ip~LV~LL~s~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~  499 (810)
T 3now_A          421 ASIHALMDLARGG-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA  499 (810)
T ss_dssp             HHHHHHHHHHHTT-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             chHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence            4678999999987 889999999999999975431                             22   56788999999


Q ss_pred             HHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhc
Q 008437          264 LLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIG  341 (565)
Q Consensus       264 Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~  341 (565)
                      |+.+|.+    +++.+|+.|+++|.||+. ++++|..+++.|++|+|+.+|.++..  ++.|+++|.+|+...+....+.
T Consensus       500 LV~LL~s----~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~  574 (810)
T 3now_A          500 LCALAKT----ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS  574 (810)
T ss_dssp             HHHHHTC----CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred             HHHHHcC----CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence            9999998    689999999999999994 67899999999999999999998753  6789999999987644443332


Q ss_pred             c---CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc
Q 008437          342 S---SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA  417 (565)
Q Consensus       342 ~---~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~  417 (565)
                      .   .|+||+|+.+|.++.+...+..|+++|.||+..+ +++..++++|+++.|+.++.+++..+++.|+.+|.||+.++
T Consensus       575 ~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~  654 (810)
T 3now_A          575 GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE  654 (810)
T ss_dssp             THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH
T ss_pred             chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence            1   4699999999987634455678999999999875 68999999999999999888888999999999999999999


Q ss_pred             ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHh-CCcHHHHHHhhhcCChhHHHHHHHHHHH
Q 008437          418 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ-EGVIPALVSISVNGSTRGRDKAQRLLML  496 (565)
Q Consensus       418 ~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~-~G~v~~Lv~L~~~~s~~~k~~A~~lL~~  496 (565)
                      +.+..++...|+++.|+.++...+..+++.|+++|.+|+..+....+.+++ +|+++.|+.|+.+++.++++.|..+|.+
T Consensus       655 ~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~N  734 (810)
T 3now_A          655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILN  734 (810)
T ss_dssp             HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            999998864589999999999999999999999999999977667788888 8999999999999999999999999999


Q ss_pred             HHh
Q 008437          497 FRE  499 (565)
Q Consensus       497 L~~  499 (565)
                      |..
T Consensus       735 L~~  737 (810)
T 3now_A          735 MIN  737 (810)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            875

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.95  E-value=3.3e-26  Score=250.76  Aligned_cols=279  Identities=19%  Similarity=0.185  Sum_probs=244.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      .++.+|+.|.+. +.+.|.+|+..+|.+... .......+++.|+||.||++|.+.   .++.+|..|+++|.||+.+++
T Consensus        58 ~i~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~---~~~~lq~~Aa~aL~nias~~~  133 (510)
T 3ul1_B           58 SVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTS  133 (510)
T ss_dssp             CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT---TCHHHHHHHHHHHHHHHTSCH
T ss_pred             hHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCH
Confidence            367899999998 999999999999987643 333567889999999999999762   568999999999999998888


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCC----CHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKT----EHQCKLDALHA  368 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~----~~~~~~~Al~a  368 (565)
                      +++..+++.|+||.|+.+|.+++  .++.|+++|.||+.+ ++.+..+.+.|++++|+.+|....    .......++++
T Consensus       134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~  213 (510)
T 3ul1_B          134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT  213 (510)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence            89999999999999999999875  467899999999987 567888888999999999998651    24578899999


Q ss_pred             HHHhccCCCChHHHH-HcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHH
Q 008437          369 LYNLSTIPSNIPNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ  447 (565)
Q Consensus       369 L~nLs~~~~nk~~iv-~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~  447 (565)
                      |.|++.+......+. ..|+++.|+.++.+.+..++..++++|.+|+.....+..++...|+++.|+++|...+..++..
T Consensus       214 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  293 (510)
T 3ul1_B          214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP  293 (510)
T ss_dssp             HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred             HHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence            999998776555444 4789999999999999999999999999999987777666555699999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          448 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       448 Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      |+.+|.+|+..+......+.+.|+++.|+.|+.+.++.+++.|.++|.+|..
T Consensus       294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a  345 (510)
T 3ul1_B          294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA  345 (510)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            9999999999998888999999999999999999999999999999999874

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.94  E-value=3.3e-26  Score=251.86  Aligned_cols=275  Identities=16%  Similarity=0.125  Sum_probs=225.4

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      .+++.||.+|.++ +.++|..|+.+|++|+.. ++++|..|++.|+|+.|+.+|.+.   .+.++++.|+.+|+||+. +
T Consensus        90 G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~---~~~~~~e~aa~aL~nLS~-~  164 (584)
T 3l6x_A           90 KGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA---RDMDLTEVITGTLWNLSS-H  164 (584)
T ss_dssp             THHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC---CSHHHHHHHHHHHHHHTT-S
T ss_pred             CCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHhC-C
Confidence            5789999999998 999999999999999985 688999999999999999999863   467889999999999986 6


Q ss_pred             chhhHHHHhcCchHHHHHHhc-----------------C---CcHHHHHHHHHHHhcCCC-CCchhhcc-CCchHHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMIS-----------------N---SNSHGAATALYLNLSFLD-DAKPIIGS-SHAVPFLVEL  352 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~-----------------s---~~~~~~A~aaL~nLs~~~-~~k~~I~~-~g~i~~Lv~l  352 (565)
                      +.+|..|++ |+++.|+.+|.                 .   ....++|+++|.||+... +++..|.+ .|+++.||.+
T Consensus       165 ~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~  243 (584)
T 3l6x_A          165 DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFI  243 (584)
T ss_dssp             GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHH
T ss_pred             chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHH
Confidence            789999885 56999999872                 0   123467899999998775 34766665 3555666666


Q ss_pred             hcC-------------------------------------------------------------------------CCCH
Q 008437          353 CKG-------------------------------------------------------------------------KTEH  359 (565)
Q Consensus       353 L~~-------------------------------------------------------------------------~~~~  359 (565)
                      |++                                                                         ..++
T Consensus       244 L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~  323 (584)
T 3l6x_A          244 VQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP  323 (584)
T ss_dssp             HHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred             HHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCH
Confidence            542                                                                         1134


Q ss_pred             HHHHHHHHHHHHhccCCC-----ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHH
Q 008437          360 QCKLDALHALYNLSTIPS-----NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA  434 (565)
Q Consensus       360 ~~~~~Al~aL~nLs~~~~-----nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv  434 (565)
                      .++++|++||.|||....     ++..+.+.|+++.|++|+..++..+++.|+++|.||+.+..++..| .. |+++.||
T Consensus       324 ~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~-g~ip~LV  401 (584)
T 3l6x_A          324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GK-HAIPNLV  401 (584)
T ss_dssp             HHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-Hh-CCHHHHH
Confidence            455666666666665431     2233345789999999999999999999999999999999999877 44 8999999


Q ss_pred             HHhhcC--------CHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC--ChhHHHHHHHHHHHHH
Q 008437          435 TVLDTG--------ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLLMLFR  498 (565)
Q Consensus       435 ~lL~~~--------s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~--s~~~k~~A~~lL~~L~  498 (565)
                      ++|..+        +..+...|+++|.+|+..+.+.++.+.++|+||.|+.|+.++  .+++++.|+.+|..|.
T Consensus       402 ~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~  475 (584)
T 3l6x_A          402 KNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW  475 (584)
T ss_dssp             HTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence            999875        467889999999999999988999999999999999999987  8999999999999985

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.94  E-value=7.9e-27  Score=243.69  Aligned_cols=241  Identities=17%  Similarity=0.118  Sum_probs=210.4

Q ss_pred             hHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHH
Q 008437          216 ERYQDFLNVLNEG----------ENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGA  284 (565)
Q Consensus       216 e~i~~ll~~L~s~----------~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~  284 (565)
                      ++++.|+..|...          .+.+.|.+|++.|++|+..+++++..+.. .|+||.|+.+|.+    ++..+|+.|+
T Consensus        73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s----~~~~v~~~A~  148 (354)
T 3nmw_A           73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS----ESEDLQQVIA  148 (354)
T ss_dssp             THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC----SCHHHHHHHH
T ss_pred             CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC----CCHHHHHHHH
Confidence            5678888888521          13678999999999999888778888865 6679999999987    7899999999


Q ss_pred             HHHHHhhcc-CchhhHHHHhcCchHHHHHHh-cCCc--HHHHHHHHHHHhcC-CCCCchhhc-cCCchHHHHHHhcCCCC
Q 008437          285 MALFNLAVN-NNRNKELMLAAGVIPLLEKMI-SNSN--SHGAATALYLNLSF-LDDAKPIIG-SSHAVPFLVELCKGKTE  358 (565)
Q Consensus       285 ~aL~nLa~~-~~~nk~~i~~~G~i~~Lv~lL-~s~~--~~~~A~aaL~nLs~-~~~~k~~I~-~~g~i~~Lv~lL~~~~~  358 (565)
                      ++|.||+.. ++++|..|++.|+||.|+.+| ++++  ..+.|+++|+||+. .+++|..|. ..|+|+.|+++|.++.+
T Consensus       149 ~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~  228 (354)
T 3nmw_A          149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ  228 (354)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred             HHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCC
Confidence            999999974 467999999999999999975 5443  46779999999998 567888888 68999999999987722


Q ss_pred             H---HHHHHHHHHHHHhcc----CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCH
Q 008437          359 H---QCKLDALHALYNLST----IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLV  430 (565)
Q Consensus       359 ~---~~~~~Al~aL~nLs~----~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v  430 (565)
                      .   ++++.|+++|+||+.    +++++..++++|+++.|++++.+++..+++.|+++|.||+. +++.+..+++. |+|
T Consensus       229 ~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~-G~i  307 (354)
T 3nmw_A          229 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM-GAV  307 (354)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHT-THH
T ss_pred             cccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHC-CCH
Confidence            2   589999999999995    77899999999999999999999999999999999999995 68888899886 999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHhhcCChH
Q 008437          431 SGLATVLDTGELIEQEQAVSCLFLLCNGNEK  461 (565)
Q Consensus       431 ~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~  461 (565)
                      +.|+++|.++++.+++.|+++|.+|+.+.+.
T Consensus       308 ~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          308 SMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999987764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.94  E-value=7.8e-25  Score=240.80  Aligned_cols=280  Identities=19%  Similarity=0.193  Sum_probs=246.2

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-cCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLK-DDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      +.++.++..|.+. +.+.|..|+..+|.+.. +.......+++.|+||.|+.+|...   .++.+|..|+++|.||+.++
T Consensus        76 ~~l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~---~~~~~q~~Aa~aL~nia~~~  151 (529)
T 3tpo_A           76 WSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGT  151 (529)
T ss_dssp             CCHHHHHHHHTSS-CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCC
Confidence            4578899999998 99999999999998764 3334567889999999999999753   56899999999999999877


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCC----CHHHHHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKT----EHQCKLDALH  367 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~----~~~~~~~Al~  367 (565)
                      ++++..+++.|+||.|+.+|.+++.  ++.|+++|.||+.+ ++++..+.+.|++++|+.+|....    .......+++
T Consensus       152 ~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~  231 (529)
T 3tpo_A          152 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW  231 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence            8888999999999999999998754  67899999999986 578889999999999999998651    3457889999


Q ss_pred             HHHHhccCCCChHHH-HHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHH
Q 008437          368 ALYNLSTIPSNIPNL-LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQE  446 (565)
Q Consensus       368 aL~nLs~~~~nk~~i-v~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e  446 (565)
                      +|.+++.+......+ ...|++|.|+.++.+++..++..++++|.+|+.....+..++...|+++.|+++|.+.++.++.
T Consensus       232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  311 (529)
T 3tpo_A          232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT  311 (529)
T ss_dssp             HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred             HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence            999999877654444 4478999999999999999999999999999998777766655569999999999999999999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          447 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       447 ~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      .|+.+|.+|+..++.....+.+.|+++.|+.|+.++++.+++.|.++|.+|..
T Consensus       312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~  364 (529)
T 3tpo_A          312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA  364 (529)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            99999999999998888999999999999999999999999999999999874

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.93  E-value=1.9e-25  Score=253.57  Aligned_cols=282  Identities=14%  Similarity=0.095  Sum_probs=246.6

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.|+.+|.++ ++.+|.+|+++|.+++. ++++|..+++.|++++|+.+|.+    ++...|+.|+++|.||+.+.+
T Consensus       495 GaVp~LV~LL~s~-s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~  568 (810)
T 3now_A          495 GITTALCALAKTE-SHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITIN  568 (810)
T ss_dssp             THHHHHHHHHTCC-CHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSC
T ss_pred             cCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCC
Confidence            4578899999987 99999999999999995 56799999999999999999987    678899999999999986533


Q ss_pred             hhhHHH---HhcCchHHHHHHhcCC-cH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437          296 RNKELM---LAAGVIPLLEKMISNS-NS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA  368 (565)
Q Consensus       296 ~nk~~i---~~~G~i~~Lv~lL~s~-~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a  368 (565)
                      . ...+   ...|++|+|+.+|.++ ..  ...|+.+|.||+.. ++++..|.+.|+++.|+.+|.++ ++.+++.|+++
T Consensus       569 p-~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~  646 (810)
T 3now_A          569 P-EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQC  646 (810)
T ss_dssp             H-HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHH
T ss_pred             h-hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHH
Confidence            2 2221   1246999999999865 32  34699999999987 57788898999999999999998 88999999999


Q ss_pred             HHHhccCCCChHHHHH-cCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCHHHHH
Q 008437          369 LYNLSTIPSNIPNLLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQE  446 (565)
Q Consensus       369 L~nLs~~~~nk~~iv~-~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e  446 (565)
                      |.||+.+++++..+++ .|+++.|+.|+.+.+..+++.|+++|+||+. ++.....+++..|+++.|+.+|.+++..+++
T Consensus       647 L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~  726 (810)
T 3now_A          647 LCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQH  726 (810)
T ss_dssp             HHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHH
T ss_pred             HHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHH
Confidence            9999999888888886 7999999999998999999999999999999 6778888888559999999999999999999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC---ChhHHHHHHHHHHHHHhhcccCC
Q 008437          447 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG---STRGRDKAQRLLMLFREQRQRDH  505 (565)
Q Consensus       447 ~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~---s~~~k~~A~~lL~~L~~~r~~~~  505 (565)
                      .|+++|.||+..+.+....+.+.|+++.|+.|+...   +.++.+.|..+|..+-++..-+.
T Consensus       727 ~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~  788 (810)
T 3now_A          727 RGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER  788 (810)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence            999999999998888889999999999999987543   78999999999999988876554

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=7.5e-25  Score=214.97  Aligned_cols=242  Identities=21%  Similarity=0.253  Sum_probs=219.1

Q ss_pred             CCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CC
Q 008437          259 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DD  335 (565)
Q Consensus       259 G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~  335 (565)
                      |.|+.|+.+|.+    .+..++..|+++|.+++..+++++..+++.|+++.|+.+|.+++.  +..|+.+|.+|+.. ++
T Consensus         2 ~~i~~L~~~L~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~   77 (252)
T 4hxt_A            2 NDVEKLVKLLTS----TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE   77 (252)
T ss_dssp             CHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             CcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            679999999988    678999999999999997666799999999999999999998753  57799999999988 77


Q ss_pred             CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc-cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437          336 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS-TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA  414 (565)
Q Consensus       336 ~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs-~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa  414 (565)
                      ++..+.+.|+++.|+.+|+++ ++.++..|+++|.+|+ .+++++..+++.|+++.|++++.+++..++..++.+|.||+
T Consensus        78 ~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  156 (252)
T 4hxt_A           78 AIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA  156 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            888898999999999999988 8999999999999999 56678999999999999999999999999999999999999


Q ss_pred             cCcccH-HHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHH
Q 008437          415 ASAAGK-EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL  493 (565)
Q Consensus       415 ~~~~~r-~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~l  493 (565)
                      ...+.. ..+.+ .|+++.|+.+|.+.++.+++.|+++|.+||..+++.++.+.+.|+++.|+.++.++++.+++.|..+
T Consensus       157 ~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~  235 (252)
T 4hxt_A          157 SGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA  235 (252)
T ss_dssp             TSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHH
Confidence            865544 66666 4999999999999999999999999999999888888899999999999999999999999999999


Q ss_pred             HHHHHhhcccCCC
Q 008437          494 LMLFREQRQRDHP  506 (565)
Q Consensus       494 L~~L~~~r~~~~~  506 (565)
                      |.+|........+
T Consensus       236 L~~l~~~~~~~~~  248 (252)
T 4hxt_A          236 LENIKSGGWLEHH  248 (252)
T ss_dssp             HHHHHHTCBCCC-
T ss_pred             HHHHHcCCCcccc
Confidence            9999977665544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=1.7e-24  Score=237.22  Aligned_cols=279  Identities=16%  Similarity=0.135  Sum_probs=247.3

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCc-cchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      +.++.++..|.++ +++.|..|+..|+.++.... ..+..+.+.|+++.|+.+|.+.   .++.+|..|+++|.+++..+
T Consensus        74 ~~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~  149 (528)
T 4b8j_A           74 ESLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGT  149 (528)
T ss_dssp             -CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCC
Confidence            5689999999987 89999999999999976654 6788889999999999999872   23899999999999999766


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN  371 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n  371 (565)
                      ++++..+++.|+++.|+.+|.+++  .++.|+++|.+|+.. +.++..+...|++++|+.+|....+..++..|+++|.+
T Consensus       150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~  229 (528)
T 4b8j_A          150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN  229 (528)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            889999999999999999998864  367799999999876 45678888899999999999543389999999999999


Q ss_pred             hccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHH-HHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437          372 LSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE-EMNSTPGLVSGLATVLDTGELIEQEQAVS  450 (565)
Q Consensus       372 Ls~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~-~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~  450 (565)
                      |+....+....+..|+++.|+.++.+.+..++..++++|.+|+.....+. .++. .|+++.|+.+|...++.+++.|++
T Consensus       230 L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~v~~~a~~  308 (528)
T 4b8j_A          230 FCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLLHPSPSVLIPALR  308 (528)
T ss_dssp             HHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCHHHHHHHHHcCCChhHHHHHHH
Confidence            99887666677779999999999988999999999999999999877664 4455 599999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC-ChhHHHHHHHHHHHHHh
Q 008437          451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNG-STRGRDKAQRLLMLFRE  499 (565)
Q Consensus       451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~-s~~~k~~A~~lL~~L~~  499 (565)
                      +|.+|+..+....+.+++.|+++.|+.++.++ ++.++..|..+|.+|..
T Consensus       309 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             HHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            99999998888888899999999999999998 99999999999999984

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=3e-24  Score=235.34  Aligned_cols=279  Identities=18%  Similarity=0.170  Sum_probs=247.0

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.|+..|.+..++.+|..|++.|.+++..+++++..+.+.|+++.|+.+|.+    .+..+++.|+++|.||+..++
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~  192 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS----SSDDVREQAVWALGNVAGDSP  192 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHTCH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC----CCHHHHHHHHHHHHHHhCCCh
Confidence            4678899999987349999999999999998888999999999999999999987    688999999999999997667


Q ss_pred             hhhHHHHhcCchHHHHHHhc-CCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          296 RNKELMLAAGVIPLLEKMIS-NSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~-s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      .++..+.+.|+++.|+.+|. +.+  .+..|+++|.+|+............|+++.|+.+|.++ +..++..|+++|.+|
T Consensus       193 ~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l  271 (528)
T 4b8j_A          193 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-DEEVLTDACWALSYL  271 (528)
T ss_dssp             HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence            78999999999999999994 433  35779999999998755555555589999999999998 999999999999999


Q ss_pred             ccCCCCh-HHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhcC-CHHHHHHHH
Q 008437          373 STIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTG-ELIEQEQAV  449 (565)
Q Consensus       373 s~~~~nk-~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~~-s~~~~e~Av  449 (565)
                      +...+++ ..+++.|+++.|+.++.+.+..++..|+.+|.||+... .....++. .|+++.|+.+|.+. ++.++..|+
T Consensus       272 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~  350 (528)
T 4b8j_A          272 SDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEAC  350 (528)
T ss_dssp             TSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHH
Confidence            9876554 56778999999999998889999999999999999854 45556666 49999999999998 999999999


Q ss_pred             HHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       450 ~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      ++|.+|+..+......+.+.|++|.|+.++.+++..+++.|..+|.+|...
T Consensus       351 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          351 WTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            999999998887788889999999999999999999999999999998865

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.92  E-value=6.8e-25  Score=216.45  Aligned_cols=236  Identities=22%  Similarity=0.255  Sum_probs=211.6

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      ..+..++.+|.++ +.++|..|++.|++++..+++++..+.+.|+++.|+.+|.+    .+..++..|+++|.+|+..++
T Consensus        12 ~~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~   86 (252)
T 4db8_A           12 SELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGN   86 (252)
T ss_dssp             CSHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCH
T ss_pred             chHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCH
Confidence            3578999999998 89999999999988776677788899999999999999987    578999999999999997778


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCc-hhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK-PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k-~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      +++..+++.|+++.|+.+|++++.  ++.|+++|.+|+..++.+ ..+.+.|+++.|+++|.++ +..++..|+++|.||
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l  165 (252)
T 4db8_A           87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI  165 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            899999999999999999998753  677999999999998888 7888899999999999998 999999999999999


Q ss_pred             ccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437          373 STIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS  450 (565)
Q Consensus       373 s~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~  450 (565)
                      +... +++..+++.|+++.|++++.+++..+++.|+.+|.||+. .++.+..+.+. |+++.|++++.++++.+++.|++
T Consensus       166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~v~~~A~~  244 (252)
T 4db8_A          166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA-GALEKLEQLQSHENEKIQKEAQE  244 (252)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHTTTTCSSSHHHHTHHH
T ss_pred             HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CcHHHHHHHhCCCCHHHHHHHHH
Confidence            9754 577788899999999999988899999999999999996 45566677775 99999999999999999999999


Q ss_pred             HHHHhhcC
Q 008437          451 CLFLLCNG  458 (565)
Q Consensus       451 ~L~~Lc~~  458 (565)
                      +|.+|+.+
T Consensus       245 ~L~~l~~~  252 (252)
T 4db8_A          245 ALEKLQSH  252 (252)
T ss_dssp             HHHTTC--
T ss_pred             HHHHHhcC
Confidence            99999863

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.92  E-value=2.2e-24  Score=211.63  Aligned_cols=238  Identities=21%  Similarity=0.241  Sum_probs=214.5

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.|+..|.+. +.++|..|+..|.+++..+++++..+.+.|+++.|+.+|.+    .+..++..|+++|.+|+..++
T Consensus         2 ~~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~   76 (252)
T 4hxt_A            2 NDVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPD   76 (252)
T ss_dssp             CHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCH
T ss_pred             CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCCh
Confidence            3678999999988 89999999999999998888899999999999999999988    679999999999999997668


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhc-CCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLS-FLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs-~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      +++..+.+.|+++.|+.+|.+++.  +..|+++|.+|+ ..++++..+.+.|+++.|+++|+++ ++.++..|+++|.||
T Consensus        77 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l  155 (252)
T 4hxt_A           77 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI  155 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence            899999999999999999998753  577999999999 4567888888899999999999998 899999999999999


Q ss_pred             ccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC-cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437          373 STIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS  450 (565)
Q Consensus       373 s~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~-~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~  450 (565)
                      +... .++..+++.|+++.|+.++.+++..++..|+.+|.+|+.. ++.+..+.+. |+++.|++++.+.++.+++.|++
T Consensus       156 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~  234 (252)
T 4hxt_A          156 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDA-GGVEVLQKLLTSTDSEVQKEAQR  234 (252)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHCCCcHHHHHHHHH
Confidence            9855 4567888999999999999888999999999999999984 4556666664 99999999999999999999999


Q ss_pred             HHHHhhcCCh
Q 008437          451 CLFLLCNGNE  460 (565)
Q Consensus       451 ~L~~Lc~~~~  460 (565)
                      +|.+|+....
T Consensus       235 ~L~~l~~~~~  244 (252)
T 4hxt_A          235 ALENIKSGGW  244 (252)
T ss_dssp             HHHHHHHTCB
T ss_pred             HHHHHHcCCC
Confidence            9999997654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.92  E-value=3.6e-24  Score=211.28  Aligned_cols=235  Identities=19%  Similarity=0.221  Sum_probs=211.9

Q ss_pred             cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcC-CC
Q 008437          258 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSF-LD  334 (565)
Q Consensus       258 ~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~-~~  334 (565)
                      ...++.++..|.+    .++++|..|+++|.++...+++++..+++.|+++.|+.+|.+++  .+..|+++|.+|+. .+
T Consensus        11 ~~~~~~~~~~L~s----~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~   86 (252)
T 4db8_A           11 GSELPQMTQQLNS----DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN   86 (252)
T ss_dssp             TCSHHHHHHHHHS----SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             cchHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence            4568999999988    68889999999998765446778889999999999999999875  35679999999997 47


Q ss_pred             CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCh-HHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH
Q 008437          335 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL  413 (565)
Q Consensus       335 ~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk-~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL  413 (565)
                      +++..+.+.|+++.|+++|+++ ++.+++.|+++|.||+.+.+++ ..+++.|+++.|++++.+++..+++.|+.+|.||
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  165 (252)
T 4db8_A           87 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI  165 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            7888898999999999999998 8999999999999999999888 8899999999999999888999999999999999


Q ss_pred             hcCc-ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHH
Q 008437          414 AASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR  492 (565)
Q Consensus       414 a~~~-~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~  492 (565)
                      +... +.+..+++. |+++.|+++|.+.++.+++.|+++|.+|+..+++.+..+.+.|+++.|+.++.++++.+++.|..
T Consensus       166 ~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~  244 (252)
T 4db8_A          166 ASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE  244 (252)
T ss_dssp             TTSCHHHHHHHHHT-TCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHH
T ss_pred             HcCChHHHHHHHHC-CCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHH
Confidence            9855 455566664 99999999999999999999999999999988888889999999999999999999999999999


Q ss_pred             HHHHHH
Q 008437          493 LLMLFR  498 (565)
Q Consensus       493 lL~~L~  498 (565)
                      +|.+|.
T Consensus       245 ~L~~l~  250 (252)
T 4db8_A          245 ALEKLQ  250 (252)
T ss_dssp             HHHTTC
T ss_pred             HHHHHh
Confidence            998875

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=3.4e-23  Score=227.27  Aligned_cols=279  Identities=15%  Similarity=0.135  Sum_probs=246.2

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.|+..|.+..++.+|..|++.|.+++..+++.+..+.+.|+++.|+.+|.+    .+..+++.|+++|.+|+..++
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~~~vr~~A~~aL~~l~~~~~  205 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVKEQAIWALGNVAGDST  205 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCc
Confidence            4578889999875478999999999999998888888999999999999999987    689999999999999997667


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCC-CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          296 RNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~-~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      .++..+...|+++.|+.+|.+.+  .+..|+++|.+|+... .........++++.|+.+|.++ ++.++..|+++|.+|
T Consensus       206 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L  284 (530)
T 1wa5_B          206 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYL  284 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred             cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence            78999999999999999998764  3577999999998765 4445555679999999999998 899999999999999


Q ss_pred             ccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437          373 STIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS  450 (565)
Q Consensus       373 s~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~  450 (565)
                      +... +....+++.|+++.|+.++.+.+..++..|+.+|.+|+... .....++.. |+++.|+.+|.+.++.+++.|++
T Consensus       285 ~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~vr~~A~~  363 (530)
T 1wa5_B          285 SDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINA-GVLPALRLLLSSPKENIKKEACW  363 (530)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHc-chHHHHHHHHcCCCHHHHHHHHH
Confidence            9764 46777888999999999988889999999999999999754 444555664 99999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      +|.+|+..+....+.+++.|+++.|+.++.++++.++..|..+|.+|...
T Consensus       364 aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG  413 (530)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence            99999998887778888999999999999999999999999999998764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=8.7e-23  Score=217.70  Aligned_cols=278  Identities=19%  Similarity=0.162  Sum_probs=242.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.|+..|.+..++.+|..|++.|.+++..+++....+.+.|+++.|+.+|.+    .++.+++.|+++|.+++..++
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----~~~~vr~~a~~~L~~l~~~~~  139 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS----EFEDVQEQAVWALGNIAGDST  139 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHccCCH
Confidence            3578889999876578999999999999998777778888889999999999987    689999999999999997666


Q ss_pred             hhhHHHHhcCchHHHHHHhcC-C--cHHHHHHHHHHHhcCCC--CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISN-S--NSHGAATALYLNLSFLD--DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY  370 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s-~--~~~~~A~aaL~nLs~~~--~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~  370 (565)
                      .++..+++.|+++.|+.+|.+ .  ..+..|+++|.+|+...  ..+..+. .++++.|+++|.++ +..++..|+++|.
T Consensus       140 ~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~  217 (450)
T 2jdq_A          140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS-DTDVLADACWALS  217 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence            788889999999999999985 3  34677999999998653  3333333 78999999999988 8999999999999


Q ss_pred             HhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHH-HHhcCCCCHHHHHHHhhcCCHHHHHHH
Q 008437          371 NLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE-EMNSTPGLVSGLATVLDTGELIEQEQA  448 (565)
Q Consensus       371 nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~-~i~~~~g~v~~Lv~lL~~~s~~~~e~A  448 (565)
                      +|+... +++..+++.|+++.|+.++.+.+..++..|+.+|.+|+...+... .+++ .|+++.|+.+|.+.++.+++.|
T Consensus       218 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a  296 (450)
T 2jdq_A          218 YLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEA  296 (450)
T ss_dssp             HHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCCCHHHHHHH
Confidence            999864 567778889999999998888899999999999999998765544 4555 4999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          449 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       449 v~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      +++|.+|+..+....+.+.+.|+++.|+.++.++++.+|..|..+|.+|...
T Consensus       297 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          297 CWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            9999999998877788888899999999999999999999999999998754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=5.2e-23  Score=225.81  Aligned_cols=278  Identities=16%  Similarity=0.159  Sum_probs=246.4

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      +.++.++..|.+. ++++|..|+..|+.++... ...+..+.+.|+++.|+.+|.+.   .++.+|..|+++|.+++..+
T Consensus        87 ~~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~  162 (530)
T 1wa5_B           87 QELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGT  162 (530)
T ss_dssp             CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCC
Confidence            5688999999987 8999999999999997543 45667788899999999999872   27899999999999999766


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN  371 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n  371 (565)
                      ++++..+++.|+++.|+.+|.+++  .++.|+++|.+|+.. ++++..+...|+++.|+.+|.+. +..++..|+++|.+
T Consensus       163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~  241 (530)
T 1wa5_B          163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSN  241 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence            778888999999999999998764  467899999999876 46778888889999999999987 89999999999999


Q ss_pred             hccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437          372 LSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQAV  449 (565)
Q Consensus       372 Ls~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av  449 (565)
                      |+... .+.......|+++.|+.++.+.+..++..++++|.+|+... +....++.. |+++.|+.+|...++.+++.|+
T Consensus       242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~Lv~lL~~~~~~v~~~a~  320 (530)
T 1wa5_B          242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV-RIPKRLVELLSHESTLVQTPAL  320 (530)
T ss_dssp             HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHGGGCSCHHHHHHHH
T ss_pred             HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhc-CcHHHHHHHHCCCChhhHHHHH
Confidence            99876 66667778999999999998889999999999999999864 456666765 9999999999999999999999


Q ss_pred             HHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       450 ~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      .+|.+|+..+....+.+.+.|+++.|+.++.+++..++..|..+|.+|..
T Consensus       321 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA  370 (530)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999888778888999999999999999999999999999999874

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.91  E-value=1.6e-23  Score=235.63  Aligned_cols=275  Identities=21%  Similarity=0.172  Sum_probs=242.5

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.+..++..|.++.+.++|..|+..|+.++.. ++++..+.+.|+++.|+.+|.+    .+..+|..|+.+|.||+..++
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~  130 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQE  130 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHST
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcc
Confidence            46788999998765899999999999999865 4599999999999999999987    678999999999999997666


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcHHHH--HHHHHHHhcC-CCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNSHGA--ATALYLNLSF-LDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~--A~aaL~nLs~-~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      ..+..+++.|+++.|+.+|++++.+..  ++.+|.+|+. .++++..+.+.|+++.|+++|++......+..++.+|+||
T Consensus       131 ~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL  210 (644)
T 2z6h_A          131 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL  210 (644)
T ss_dssp             THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            788888899999999999998865444  5568999986 5788899999999999999999875677889999999999


Q ss_pred             ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437          373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL  452 (565)
Q Consensus       373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L  452 (565)
                      +.+++++..+++.|+++.|+.++.+++..+++.++++|.||+......  ... .++++.|+++|...++.+++.|+++|
T Consensus       211 s~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~-~~~i~~Lv~lL~~~d~~v~~~a~~aL  287 (644)
T 2z6h_A          211 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLGSDDINVVTCAAGIL  287 (644)
T ss_dssp             TTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSC-HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             hcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhh-hhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            999999999999999999999988889999999999999999854322  111 27899999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHhCCcHHHHHHhhhc-CC-hhHHHHHHHHHHHHH
Q 008437          453 FLLCNGNEKCCQMVLQEGVIPALVSISVN-GS-TRGRDKAQRLLMLFR  498 (565)
Q Consensus       453 ~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-~s-~~~k~~A~~lL~~L~  498 (565)
                      .+|+..+.+.++.+.+.|+++.|+.++.. ++ +.+++.|..+|.+|.
T Consensus       288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~  335 (644)
T 2z6h_A          288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT  335 (644)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence            99999988888999999999999998876 33 799999999999996

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.91  E-value=1.6e-23  Score=228.38  Aligned_cols=276  Identities=21%  Similarity=0.173  Sum_probs=242.5

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.++..|.++.+++++..|+..|++++.. ++++..+++.|+++.|+.+|.+    .++.++..|+++|.+|+..++
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~  133 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQE  133 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCT
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCc
Confidence            46788999997655899999999999999865 5599999999999999999987    678999999999999997667


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      ..+..+.+.|+++.|+.+|.+++.  +..++.+|.+|+.. ++++..+.+.|+++.|+++|+++.....+..++.+|.+|
T Consensus       134 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l  213 (529)
T 1jdh_A          134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL  213 (529)
T ss_dssp             THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            788888899999999999998754  34567799999875 678888888999999999999875667788899999999


Q ss_pred             ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437          373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL  452 (565)
Q Consensus       373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L  452 (565)
                      +.+++++..+++.|+++.|+.++.+++..+++.++++|.||+.......  . ..++++.|+++|.+.++.+++.|+++|
T Consensus       214 ~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~-~~~~i~~L~~ll~~~~~~v~~~a~~~L  290 (529)
T 1jdh_A          214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--G-MEGLLGTLVQLLGSDDINVVTCAAGIL  290 (529)
T ss_dssp             TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--C-CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             hcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--H-HHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            9999999999999999999999888899999999999999998654322  1 137899999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHhCCcHHHHHHhhhc--CChhHHHHHHHHHHHHHh
Q 008437          453 FLLCNGNEKCCQMVLQEGVIPALVSISVN--GSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       453 ~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~--~s~~~k~~A~~lL~~L~~  499 (565)
                      .+|+..+.+.+..+.+.|+++.|+.++..  ..+.+++.|..+|.+|..
T Consensus       291 ~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~  339 (529)
T 1jdh_A          291 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             HHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence            99999888889999999999999998875  337999999999999863

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=4e-24  Score=209.70  Aligned_cols=193  Identities=18%  Similarity=0.167  Sum_probs=171.4

Q ss_pred             CHHHHHHHhcccccCCCH--HHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-C
Q 008437          260 FVVALLRFLESAVCERNS--YAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-D  334 (565)
Q Consensus       260 ~i~~Lv~lL~s~~~s~~~--~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~  334 (565)
                      .++.|+++|.+    +++  .+|..|+.+|.+|+..++++|..|++.|+||.|+.+|++++  .++.|+++|.||+.. +
T Consensus         9 ~i~~lV~lL~s----~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~   84 (233)
T 3tt9_A            9 TLERAVSMLEA----DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN   84 (233)
T ss_dssp             CHHHHHHTCCS----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHhCC----CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            48999999988    455  88999999999999878889999999999999999999875  367799999999984 7


Q ss_pred             CCchhhccCCchHHHHHHhc-CCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccC----------------C
Q 008437          335 DAKPIIGSSHAVPFLVELCK-GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV----------------P  397 (565)
Q Consensus       335 ~~k~~I~~~g~i~~Lv~lL~-~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~----------------~  397 (565)
                      ++|..|.+.|+||+|+++|+ ++ +.++++.|+.+|+||+..+++|..+++. +|++|++++.                .
T Consensus        85 ~nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~  162 (233)
T 3tt9_A           85 DNKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGL  162 (233)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccccc
Confidence            89999999999999999998 46 8899999999999999999999999975 7999999542                1


Q ss_pred             CChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcC------CHHHHHHHHHHHHHhhcC
Q 008437          398 GDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTG------ELIEQEQAVSCLFLLCNG  458 (565)
Q Consensus       398 ~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~------s~~~~e~Av~~L~~Lc~~  458 (565)
                      .+..+++.|.++|+||+. ++++|..|.+.+|+|+.|+.+++.+      +.+.+|+|+.+|+|||.+
T Consensus       163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            256899999999999998 5699999999888999999999852      668999999999999975

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.90  E-value=8.5e-22  Score=210.00  Aligned_cols=275  Identities=16%  Similarity=0.159  Sum_probs=235.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhc--cCccchhhhhcc-CCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLK--DDEEARVFTGAN-GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~--~~~~~r~~i~~~-G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      ++.++..|.+. +.++|..|+..|+.++.  .++.. ..+.+. |+++.|+.+|.+.   .+..+|..|+++|.+++..+
T Consensus        22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~---~~~~v~~~a~~~L~~l~~~~   96 (450)
T 2jdq_A           22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRK---ENCTLQFESAWVLTNIASGN   96 (450)
T ss_dssp             CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCC
Confidence            67889999887 99999999999999864  23333 345555 9999999999872   27899999999999999766


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCC-CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN  371 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~-~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n  371 (565)
                      .++...+++.|+++.|+.+|.+++  .++.|+++|.+++... +.+..+...|+++.|+.+|.+..+..++..|+++|.+
T Consensus        97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~  176 (450)
T 2jdq_A           97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN  176 (450)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            677888889999999999999874  3677999999998774 5777788889999999999963389999999999999


Q ss_pred             hccCC--CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHH
Q 008437          372 LSTIP--SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQA  448 (565)
Q Consensus       372 Ls~~~--~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~A  448 (565)
                      |+...  ..+..++ .|+++.|+.++.+++..++..++++|.+|+... +.+..+... |+++.|+.+|.+.++.+++.|
T Consensus       177 l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a  254 (450)
T 2jdq_A          177 LCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA-GVCRRLVELLMHNDYKVVSPA  254 (450)
T ss_dssp             HHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHT-TTHHHHHHHTTCSCHHHHHHH
T ss_pred             HhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHc-CcHHHHHHHHCCCchhHHHHH
Confidence            99754  3333344 899999999988889999999999999999864 455566664 999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          449 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       449 v~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      +++|.+|+...+...+.+.+.|+++.|+.++.+.++.+++.|..+|.++..
T Consensus       255 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~  305 (450)
T 2jdq_A          255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA  305 (450)
T ss_dssp             HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            999999999888777888899999999999999999999999999999874

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.90  E-value=3.1e-22  Score=218.16  Aligned_cols=275  Identities=17%  Similarity=0.112  Sum_probs=241.3

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      ++++.|+..|.+. ++++|..|+..|.+++..++..+..+.+.|+++.|+.+|.+    .+..++..++.+|.+|+..++
T Consensus       101 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~~~~~L~~la~~~~  175 (529)
T 1jdh_A          101 GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQ  175 (529)
T ss_dssp             THHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHhCCH
Confidence            5788999999987 89999999999999998877889999999999999999987    678899999999999998778


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH---HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~---~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      +++..+.+.|+++.|+.+|++++.   ...++.+|.+|+..++++..+.+.|+++.|+.+|.++ ++..++.++++|.||
T Consensus       176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~L~~l  254 (529)
T 1jdh_A          176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNL  254 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence            899999999999999999987632   3558889999999999999999999999999999998 899999999999999


Q ss_pred             ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhc--CCHHHHHHHH
Q 008437          373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDT--GELIEQEQAV  449 (565)
Q Consensus       373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~--~s~~~~e~Av  449 (565)
                      +.......  ...|+++.|++++.+.+..+++.++++|.+|+... +++..+.+. |+++.|+++|..  .++.+++.|+
T Consensus       255 ~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~~~~v~~~a~  331 (529)
T 1jdh_A          255 SDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAI  331 (529)
T ss_dssp             HTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHccCCHHHHHHHHH
Confidence            97654322  23489999999888899999999999999999864 588888876 999999999976  3479999999


Q ss_pred             HHHHHhhcCChH---HHHHHHhCCcHHHHHHhhhcCC-hhHHHHHHHHHHHHHh
Q 008437          450 SCLFLLCNGNEK---CCQMVLQEGVIPALVSISVNGS-TRGRDKAQRLLMLFRE  499 (565)
Q Consensus       450 ~~L~~Lc~~~~~---~~~~v~~~G~v~~Lv~L~~~~s-~~~k~~A~~lL~~L~~  499 (565)
                      .+|.+|+..++.   .+..+.+.|+++.|+.++.+.. ..+++.|.++|.++..
T Consensus       332 ~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~  385 (529)
T 1jdh_A          332 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  385 (529)
T ss_dssp             HHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence            999999986532   4678889999999999988876 5899999999999874

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=1.9e-23  Score=204.86  Aligned_cols=194  Identities=21%  Similarity=0.196  Sum_probs=170.3

Q ss_pred             HHHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          217 RYQDFLNVLNEGENL--GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~--~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      .++.+|.+|.++ +.  ++|..|+..|++++..++++|..+.+.|+||.|+++|.+    ++..+|+.|+++|.||+..+
T Consensus         9 ~i~~lV~lL~s~-~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s----~~~~vq~~Aa~aL~nLa~~~   83 (233)
T 3tt9_A            9 TLERAVSMLEAD-HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV----QNEDVQRAVCGALRNLVFED   83 (233)
T ss_dssp             CHHHHHHTCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHhCCC-CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCC
Confidence            578999999987 66  889999999999999899999999999999999999988    68999999999999999777


Q ss_pred             chhhHHHHhcCchHHHHHHhcC-C--cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhc---CC------------
Q 008437          295 NRNKELMLAAGVIPLLEKMISN-S--NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK---GK------------  356 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s-~--~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~---~~------------  356 (565)
                      ++||..|+++|+||.|+.+|.+ +  +.+++|+++|+|||..+++|..|.+ ++|++|++++.   +|            
T Consensus        84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~  162 (233)
T 3tt9_A           84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL  162 (233)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence            8999999999999999999974 4  3468899999999999999999986 57999999763   12            


Q ss_pred             CCHHHHHHHHHHHHHhccCC-CChHHHHHc-CchHHHhhccCC------CChHHHHHHHHHHHHHhcC
Q 008437          357 TEHQCKLDALHALYNLSTIP-SNIPNLLSA-GIISGLQSLAVP------GDPMWTEKSLAVLLNLAAS  416 (565)
Q Consensus       357 ~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~-G~v~~Lv~Ll~~------~~~~~~e~al~~L~nLa~~  416 (565)
                      .+..++.+|..+|+||+..+ ++|..|.+. |+|+.|+.+++.      .+...+|.|+.+|+||+..
T Consensus       163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            25689999999999999854 899999985 778999997753      2567899999999999864

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.89  E-value=8.4e-22  Score=226.38  Aligned_cols=275  Identities=21%  Similarity=0.169  Sum_probs=239.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.+..|+..|.++.+.++|..|+..|++|+.. ++++..+++.|+|+.|+.+|.+    .+..++..|+++|.||+...+
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~----~~~~v~~~A~~aL~nLa~~~~  266 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGS----PVDSVLFHAITTLHNLLLHQE  266 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHST
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCh
Confidence            46788899998655899999999999999864 5678889999999999999987    678999999999999997767


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      ..+..+++.|+++.|+.+|.+++.  +..++.+|.+|+.. ++++..+.+.|+++.|+++|+++.....+..++.+|.+|
T Consensus       267 ~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L  346 (780)
T 2z6g_A          267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL  346 (780)
T ss_dssp             THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            788888899999999999988654  45577889898864 678888888899999999999885566778899999999


Q ss_pred             ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437          373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL  452 (565)
Q Consensus       373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L  452 (565)
                      +.+..++..+++.|+++.|+.++.+.+..+++.++++|.+|+......  .. ..++++.|+++|...++.+++.|+++|
T Consensus       347 s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~-~~~~i~~Lv~lL~~~d~~vr~~A~~aL  423 (780)
T 2z6g_A          347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EG-MEGLLGTLVQLLGSDDINVVTCAAGIL  423 (780)
T ss_dssp             HTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SC-CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             hcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hh-hhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            999999999999999999999988888999999999999999865331  11 236899999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHhCCcHHHHHHhhhc-CC-hhHHHHHHHHHHHHH
Q 008437          453 FLLCNGNEKCCQMVLQEGVIPALVSISVN-GS-TRGRDKAQRLLMLFR  498 (565)
Q Consensus       453 ~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-~s-~~~k~~A~~lL~~L~  498 (565)
                      .+|+..+.+.+..+.+.|+++.|+.++.. ++ +.+++.|..+|.+|.
T Consensus       424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~  471 (780)
T 2z6g_A          424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT  471 (780)
T ss_dssp             HHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            99999988888999999999999998776 33 489999999999986

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.88  E-value=1.7e-21  Score=219.01  Aligned_cols=275  Identities=18%  Similarity=0.116  Sum_probs=239.4

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      ..++.|+..|.+. +..+|..|+..|.+++..++..+..+.+.|+++.|+.+|.+    .+..++..++.+|.+|+..++
T Consensus        98 g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~  172 (644)
T 2z6h_A           98 GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQ  172 (644)
T ss_dssp             THHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc----CCHHHHHHHHHHHHHHHhcCc
Confidence            4778999999987 89999999999999998877888889999999999999987    567888888899999997678


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCc---HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          296 RNKELMLAAGVIPLLEKMISNSN---SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~---~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      +++..+.+.|+++.|+.+|+++.   ....++.+|.+|+..++++..+.+.|+++.|+.+|.++ +..++..++++|.||
T Consensus       173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~nL  251 (644)
T 2z6h_A          173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNL  251 (644)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence            89999999999999999998764   24668999999999999999999999999999999998 899999999999999


Q ss_pred             ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhc-CC-HHHHHHHH
Q 008437          373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDT-GE-LIEQEQAV  449 (565)
Q Consensus       373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~-~s-~~~~e~Av  449 (565)
                      +......  ....|+++.|+.++.+.+..+++.++++|.+|+... +++..+.+. |+++.|+++|.. ++ +.+++.|+
T Consensus       252 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~-g~v~~Lv~lL~~~~~~~~v~~~a~  328 (644)
T 2z6h_A          252 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAI  328 (644)
T ss_dssp             GGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHHccCCcHHHHHHHH
Confidence            9754332  122489999999998889999999999999999864 677778875 999999999986 33 79999999


Q ss_pred             HHHHHhhcCCh---HHHHHHHhCCcHHHHHHhhhcCC-hhHHHHHHHHHHHHHh
Q 008437          450 SCLFLLCNGNE---KCCQMVLQEGVIPALVSISVNGS-TRGRDKAQRLLMLFRE  499 (565)
Q Consensus       450 ~~L~~Lc~~~~---~~~~~v~~~G~v~~Lv~L~~~~s-~~~k~~A~~lL~~L~~  499 (565)
                      .+|.+|+....   ..+..+...|+++.|+.++.+.+ ..+++.|..+|.+|..
T Consensus       329 ~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~  382 (644)
T 2z6h_A          329 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  382 (644)
T ss_dssp             HHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence            99999997543   23455788999999999988875 6899999999999874

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.87  E-value=4.9e-21  Score=220.02  Aligned_cols=275  Identities=19%  Similarity=0.173  Sum_probs=236.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .++.|+..|.+. +...+..|+..|.+++.....   .....++++.|+.+|.+    .+..+++.|+++|.+|+..+++
T Consensus       361 ~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~----~d~~vr~~A~~aL~~L~~~~~~  432 (780)
T 2z6g_A          361 GMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYK  432 (780)
T ss_dssp             HHHHHGGGTTCS-CHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTSSCHH
T ss_pred             hHHHHHHHHcCC-chHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCHH
Confidence            457777888776 889999999999999865532   23346889999999987    6899999999999999977678


Q ss_pred             hhHHHHhcCchHHHHHHhcC-C---cHHHHHHHHHHHhcCCCC----CchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437          297 NKELMLAAGVIPLLEKMISN-S---NSHGAATALYLNLSFLDD----AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA  368 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s-~---~~~~~A~aaL~nLs~~~~----~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a  368 (565)
                      ++..+++.|+++.|+.+|.. +   ..+..|+.+|.+|+....    .+..+...|+++.|+++|.++.+..+++.|+++
T Consensus       433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a  512 (780)
T 2z6g_A          433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL  512 (780)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence            89999999999999999975 2   446779999999987532    245777789999999999988345899999999


Q ss_pred             HHHhccCCCChHHHHHcCchHHHhhccCCCC----------------------hHHHHHHHHHHHHHhcCcccHHHHhcC
Q 008437          369 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGD----------------------PMWTEKSLAVLLNLAASAAGKEEMNST  426 (565)
Q Consensus       369 L~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~----------------------~~~~e~al~~L~nLa~~~~~r~~i~~~  426 (565)
                      |.||+..++++..+++.|+++.|++++.+++                      ..+++.++.+|.+|+....++..+...
T Consensus       513 L~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~  592 (780)
T 2z6g_A          513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL  592 (780)
T ss_dssp             HHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred             HHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHC
Confidence            9999998889989999999999999764422                      346788999999999999999888886


Q ss_pred             CCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437          427 PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       427 ~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                       |+++.|+.+|.+.++.++..|+.+|.+|+.. .+.+..+.+.|+++.|+.|+.+.++.+|+.|..+|..|...+
T Consensus       593 -~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~  665 (780)
T 2z6g_A          593 -NTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK  665 (780)
T ss_dssp             -CCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred             -CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence             9999999999999999999999999999865 557888899999999999999999999999999999988744

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.86  E-value=4.3e-22  Score=168.83  Aligned_cols=79  Identities=27%  Similarity=0.312  Sum_probs=73.3

Q ss_pred             CCCCCCCCcccccccccccCCceecCCC-cccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 008437           64 GQMPLPPEELRCPISLQLMYDPVIIASG-QTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS  142 (565)
Q Consensus        64 ~~~~~~p~~f~CpI~~~~m~dPV~~~~g-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  142 (565)
                      .....+|++|+||||+++|+|||+++|| |||||.||++||.. +.+||+|+++|...+|+||+.|+++|+.|+.+++..
T Consensus        14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~   92 (98)
T 1wgm_A           14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ   92 (98)
T ss_dssp             CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred             hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence            4456789999999999999999999999 99999999999986 679999999999999999999999999999999864


Q ss_pred             C
Q 008437          143 V  143 (565)
Q Consensus       143 ~  143 (565)
                      .
T Consensus        93 ~   93 (98)
T 1wgm_A           93 S   93 (98)
T ss_dssp             S
T ss_pred             h
Confidence            3

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.86  E-value=2.1e-22  Score=166.44  Aligned_cols=76  Identities=30%  Similarity=0.392  Sum_probs=71.1

Q ss_pred             CCCCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 008437           64 GQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG  140 (565)
Q Consensus        64 ~~~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~  140 (565)
                      .+...+|++|.||||+++|+|||+++|||||||.||++||.. +.+||.|++++...+|+||..|+++|+.|+.+|+
T Consensus         6 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A            6 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             CCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             hhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence            456678999999999999999999999999999999999985 6899999999999999999999999999999875

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.2e-20  Score=210.97  Aligned_cols=246  Identities=13%  Similarity=0.153  Sum_probs=207.9

Q ss_pred             chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCc-----HHHHHHH
Q 008437          251 ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN-----SHGAATA  325 (565)
Q Consensus       251 ~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~-----~~~~A~a  325 (565)
                      ++..+.+.|+|+.|+.++++    .++.+|+.|+++|.||+. +.++|..+++.|++++|+.+|.++.     .++.|+.
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S----~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~  523 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHN----LSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCR  523 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGG----SCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcC----CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHH
Confidence            56788899999999999988    689999999999999995 6899999999999999999998863     3678999


Q ss_pred             HHHHhcCCCCCchhhcc---CCchHHHHHHhcCCCCH-------------HHHHHHHHHHHHhccCCCC-----hHHHHH
Q 008437          326 LYLNLSFLDDAKPIIGS---SHAVPFLVELCKGKTEH-------------QCKLDALHALYNLSTIPSN-----IPNLLS  384 (565)
Q Consensus       326 aL~nLs~~~~~k~~I~~---~g~i~~Lv~lL~~~~~~-------------~~~~~Al~aL~nLs~~~~n-----k~~iv~  384 (565)
                      +|.+|+...+....+..   .|+|++|+.||..+...             ..+..|+.||.||++.++|     +.++++
T Consensus       524 ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~  603 (778)
T 3opb_A          524 ALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVS  603 (778)
T ss_dssp             HHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Confidence            99999876665555532   38999999999832111             2377899999999998743     788999


Q ss_pred             c-CchHHHhhccCCCChHHHHHHHHHHHHHhcCcccH-HHHhcCC-----CCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437          385 A-GIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGK-EEMNSTP-----GLVSGLATVLDTGELIEQEQAVSCLFLLCN  457 (565)
Q Consensus       385 ~-G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r-~~i~~~~-----g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~  457 (565)
                      + |+++.|..++.+++..+++.|+.+|+||+.+++++ ..+....     +.+..|+.++..++...++.|+++|.+++.
T Consensus       604 ~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts  683 (778)
T 3opb_A          604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT  683 (778)
T ss_dssp             SHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            5 99999999887888999999999999999999876 3555432     137789999999999999999999999987


Q ss_pred             CChHHHHHHHhC-CcHHHHHHhhhc--CChhHHHHHHHHHHHHHhhc
Q 008437          458 GNEKCCQMVLQE-GVIPALVSISVN--GSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       458 ~~~~~~~~v~~~-G~v~~Lv~L~~~--~s~~~k~~A~~lL~~L~~~r  501 (565)
                      ..+..++.+++. +++..|+.++.+  .++.++..+..+|.+|.++-
T Consensus       684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence            676667777776 899999999998  89999999999999999754

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.86  E-value=8e-21  Score=182.10  Aligned_cols=197  Identities=20%  Similarity=0.228  Sum_probs=174.5

Q ss_pred             hccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC
Q 008437          256 GANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL  333 (565)
Q Consensus       256 ~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~  333 (565)
                      ...|..+.|+.+|.+    .+..++..|+++|.+|+..+++++..+++.|+++.|+.+|.+++.  +..|+++|.+|+..
T Consensus         9 ~~~~~~~~l~~LL~s----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~   84 (210)
T 4db6_A            9 HHGSELPQMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG   84 (210)
T ss_dssp             ----CHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             cccchhHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            347889999999988    789999999999999997778889999999999999999998753  57799999999964


Q ss_pred             -CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHH
Q 008437          334 -DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL  411 (565)
Q Consensus       334 -~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~  411 (565)
                       ++++..+.+.|+++.|+.+|+++ ++.++..|+++|.||+... +++..+++.|+++.|++++.+++..+++.|+.+|.
T Consensus        85 ~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  163 (210)
T 4db6_A           85 GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS  163 (210)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence             57788888899999999999999 8999999999999999654 56678889999999999998889999999999999


Q ss_pred             HHhcC-cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 008437          412 NLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG  458 (565)
Q Consensus       412 nLa~~-~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~  458 (565)
                      ||+.. ++.+..+.+. |+++.|++++.+.++.+++.|+.+|.+|+.+
T Consensus       164 ~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          164 NIASGGNEQKQAVKEA-GALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHTSCHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             HHHcCCcHHHHHHHHC-CCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            99997 6777777775 9999999999999999999999999999863

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.86  E-value=5.8e-21  Score=183.06  Aligned_cols=193  Identities=20%  Similarity=0.229  Sum_probs=175.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      ..+.|+.+|.+. ++++|..|++.|.+++..+++.+..+.+.|+++.|+.+|.+    .++.+++.|+++|.||+..++.
T Consensus        13 ~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A           13 ELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hhHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcH
Confidence            457788888887 99999999999999998888899999999999999999987    6889999999999999977788


Q ss_pred             hhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437          297 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS  373 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs  373 (565)
                      ++..+++.|+++.|+.+|++++.  +..|+++|.+|+.. ++.+..+.+.|+++.|+++|+++ +..++..|+++|.||+
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999999998754  57799999999975 44556777899999999999998 9999999999999999


Q ss_pred             cC-CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437          374 TI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA  415 (565)
Q Consensus       374 ~~-~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~  415 (565)
                      .. ++++..+++.|+++.|++++.+++..+++.|+.+|.+|+.
T Consensus       167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            87 5688889999999999999989999999999999999986

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.86  E-value=3e-22  Score=170.39  Aligned_cols=76  Identities=30%  Similarity=0.396  Sum_probs=71.1

Q ss_pred             CCCCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 008437           64 GQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG  140 (565)
Q Consensus        64 ~~~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~  140 (565)
                      .+...+|++|.||||+++|+|||+++|||||||.||++||.. +.+||.|++++...+|+||..|+++|+.|+.+|+
T Consensus        21 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ   96 (100)
T ss_dssp             CSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred             hhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence            345678999999999999999999999999999999999984 7899999999999999999999999999999875

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.84  E-value=2e-21  Score=181.32  Aligned_cols=78  Identities=33%  Similarity=0.393  Sum_probs=72.5

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSV  143 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~  143 (565)
                      ...+|++|+||||+++|+|||+++|||||||.||++||..++.+||.|+++|...+|+||+.|+++|+.|+..||+..
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~~  177 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVE  177 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCcC
Confidence            456799999999999999999999999999999999998755589999999999999999999999999999998753

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.80  E-value=4.1e-20  Score=150.12  Aligned_cols=76  Identities=63%  Similarity=1.145  Sum_probs=71.9

Q ss_pred             CCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 008437           67 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS  142 (565)
Q Consensus        67 ~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  142 (565)
                      ..+|++|.||||+++|.|||+++|||+||+.||++|+..+..+||.|++++...+++||..|+++|+.|..+|+++
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~   78 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE   78 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred             cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence            4578999999999999999999999999999999999877889999999999889999999999999999999874

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.78  E-value=2e-18  Score=175.76  Aligned_cols=236  Identities=16%  Similarity=0.091  Sum_probs=185.4

Q ss_pred             hHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHH-HhcccccCCCHHHHHHH
Q 008437          216 ERYQDFLNVLNEG-----------ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLR-FLESAVCERNSYAQEIG  283 (565)
Q Consensus       216 e~i~~ll~~L~s~-----------~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~~~s~~~~~q~~A  283 (565)
                      +.+...+..|.+.           .+.+.+..|+..|..++. +.++...+.+.|+++.|+. +|.+    .++.+++.|
T Consensus        28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s----~~~~vr~~A  102 (296)
T 1xqr_A           28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEA----GAAGLRWRA  102 (296)
T ss_dssp             HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTC----SSHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcC----CCHHHHHHH
Confidence            4566777777753           134678899999999995 4568888899999999999 9987    689999999


Q ss_pred             HHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC-c--HHHHHHHHHHHhcCCC-CCchhhccCCchHHHHHHhcCCCCH
Q 008437          284 AMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS-N--SHGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEH  359 (565)
Q Consensus       284 ~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~-~--~~~~A~aaL~nLs~~~-~~k~~I~~~g~i~~Lv~lL~~~~~~  359 (565)
                      +++|.|++.+++.++..+++.|+++.|+.+|+++ +  .++.|+++|.+|+.+. .....+...|+++.|+.+|+++ +.
T Consensus       103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~  181 (296)
T 1xqr_A          103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQ  181 (296)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CH
T ss_pred             HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CH
Confidence            9999999987788899999999999999999853 3  3677999999998753 4566777789999999999998 99


Q ss_pred             HHHHHHHHHHHHhcc-CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCccc-HHHHhcCCCCHHHHH---
Q 008437          360 QCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG-KEEMNSTPGLVSGLA---  434 (565)
Q Consensus       360 ~~~~~Al~aL~nLs~-~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~-r~~i~~~~g~v~~Lv---  434 (565)
                      .+++.|+++|.+|+. +++.+..+++.|+++.|+.+|.+.+..+++.|+.+|.||+..... +.........+..++   
T Consensus       182 ~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~  261 (296)
T 1xqr_A          182 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR  261 (296)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH
Confidence            999999999999986 456889999999999999999988999999999999999987332 222222101122222   


Q ss_pred             -HHhhc-C-CHHHHHHHHHHHHHhhc
Q 008437          435 -TVLDT-G-ELIEQEQAVSCLFLLCN  457 (565)
Q Consensus       435 -~lL~~-~-s~~~~e~Av~~L~~Lc~  457 (565)
                       +-|.. . ..++.+.|..+|.+...
T Consensus       262 ~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          262 CQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHccchHHHHHHHHHHHHHHHHHcC
Confidence             12221 1 34566777777666553

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.78  E-value=3.2e-18  Score=191.31  Aligned_cols=280  Identities=14%  Similarity=0.112  Sum_probs=222.6

Q ss_pred             chhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437          213 NVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLA  291 (565)
Q Consensus       213 ~~~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa  291 (565)
                      .+.+....+.+.|... +.+.+..|++.|..++. +++.|..+++ .|+++.|+.+|.+.   .+..+.-.++.+|.||+
T Consensus       331 si~~La~~~~~~L~~~-~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~---~d~s~~Ygal~IL~NLt  405 (778)
T 3opb_A          331 NLKQLSEIFINAISRR-IVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQ---KMTHCLYGLLVIMANLS  405 (778)
T ss_dssp             CHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTT---CCTTHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhc
Confidence            3345556677778776 67779999999999984 6678888887 78899999999852   45567888889999987


Q ss_pred             ccCch--------------------------------------hhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhc
Q 008437          292 VNNNR--------------------------------------NKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLS  331 (565)
Q Consensus       292 ~~~~~--------------------------------------nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs  331 (565)
                      ...+.                                      ++..+.++|+++.|+.++.+++  .++.|+++|.+|+
T Consensus       406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS  485 (778)
T 3opb_A          406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT  485 (778)
T ss_dssp             CCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            63221                                      5677889999999999998764  4678999999999


Q ss_pred             CCCCCchhhccCCchHHHHHHhcCCCCHH---HHHHHHHHHHHhccCCCChHHHHH---cCchHHHhhccCC--CCh---
Q 008437          332 FLDDAKPIIGSSHAVPFLVELCKGKTEHQ---CKLDALHALYNLSTIPSNIPNLLS---AGIISGLQSLAVP--GDP---  400 (565)
Q Consensus       332 ~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~---~~~~Al~aL~nLs~~~~nk~~iv~---~G~v~~Lv~Ll~~--~~~---  400 (565)
                      .+.++|..+.+.|++++|+.+|.++ ...   ++..|+.||.+|....+....+-.   .|+|++|+.||..  +..   
T Consensus       486 ~d~~~R~~lvqqGal~~LL~lL~s~-~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~  564 (778)
T 3opb_A          486 RSKNFIPQLAQQGAVKIILEYLANK-QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNP  564 (778)
T ss_dssp             TSGGGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccc
Confidence            9999999999999999999999988 433   899999999999865554433211   3999999998762  211   


Q ss_pred             ---------HHHHHHHHHHHHHhcCc-----ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 008437          401 ---------MWTEKSLAVLLNLAASA-----AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMV  466 (565)
Q Consensus       401 ---------~~~e~al~~L~nLa~~~-----~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v  466 (565)
                               .-+..|+.+|.|||..+     +.|..|+.+.|+++.|..+|.+.+..+++.|+.++.||+.+.+...+.+
T Consensus       565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~  644 (778)
T 3opb_A          565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKF  644 (778)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGT
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence                     12678999999999986     3478888754899999999999999999999999999998665321233


Q ss_pred             HhC------CcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          467 LQE------GVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       467 ~~~------G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      ...      +.++.|+.|+..++..+|+.|.++|.++.
T Consensus       645 ~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt  682 (778)
T 3opb_A          645 FNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA  682 (778)
T ss_dssp             SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            222      23778999999999999999999999995

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.77  E-value=1.8e-19  Score=181.63  Aligned_cols=78  Identities=33%  Similarity=0.408  Sum_probs=72.8

Q ss_pred             CCCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 008437           65 QMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS  142 (565)
Q Consensus        65 ~~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  142 (565)
                      ....+|++|+||||+++|+|||+++|||||||.||++|+..+..+||.|++++...+|+||..|+++|+.|+..|++.
T Consensus       201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~  278 (281)
T 2c2l_A          201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV  278 (281)
T ss_dssp             SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred             cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence            345689999999999999999999999999999999999987777999999999889999999999999999999874

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=5.4e-19  Score=148.79  Aligned_cols=74  Identities=20%  Similarity=0.346  Sum_probs=65.4

Q ss_pred             CCCcccccccccccCCceecC-CCcccchHHHHHHHhcC-----CCCCCCCC--CC-CCCCCCcccHHHHHHHHHHHHHc
Q 008437           69 PPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDG-----HSTCPKTQ--QK-LPHLCLTPNYCVKGLIASWCEMN  139 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~~-----~~~cP~t~--~~-l~~~~l~pn~~l~~~i~~~~~~~  139 (565)
                      .+++|.||||+++|+|||+++ |||||||.||++||..+     ..+||+|+  +. +...+|+||..|+++|+.|+.++
T Consensus         4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~   83 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR   83 (94)
T ss_dssp             CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred             CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence            478999999999999999996 99999999999999863     46899944  44 88889999999999999999887


Q ss_pred             CCC
Q 008437          140 GVS  142 (565)
Q Consensus       140 ~~~  142 (565)
                      +-.
T Consensus        84 ~r~   86 (94)
T 2yu4_A           84 HRH   86 (94)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            743

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.74  E-value=1.5e-17  Score=169.11  Aligned_cols=179  Identities=15%  Similarity=0.042  Sum_probs=160.6

Q ss_pred             HHHHHHHHHHhcCCCCCchhhccCCchHHHHH-HhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCC
Q 008437          320 HGAATALYLNLSFLDDAKPIIGSSHAVPFLVE-LCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVP  397 (565)
Q Consensus       320 ~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~-lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~  397 (565)
                      +..|+..|.++....+++..+...|++++|+. +|.++ ++.++..|+++|.|++.+. .++..+++.|+++.|+.++.+
T Consensus        57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~  135 (296)
T 1xqr_A           57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR  135 (296)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence            45588888888887778888888999999999 99998 9999999999999999865 578889999999999998874


Q ss_pred             -CChHHHHHHHHHHHHHhcC-cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHH
Q 008437          398 -GDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPAL  475 (565)
Q Consensus       398 -~~~~~~e~al~~L~nLa~~-~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~L  475 (565)
                       .+..+++.|+++|.||+.+ +.....+... |+++.|+.+|.+++..++..|+++|.+|+..+.+.++.+.+.|+++.|
T Consensus       136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~-ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L  214 (296)
T 1xqr_A          136 DACDTVRVKALFAISCLVREQEAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL  214 (296)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence             4788999999999999975 4556677775 899999999999999999999999999999888889999999999999


Q ss_pred             HHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          476 VSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       476 v~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      +.|+...+..+++.|..+|..|...
T Consensus       215 v~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          215 VALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHhC
Confidence            9999999999999999999998754

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.70  E-value=3.1e-18  Score=193.25  Aligned_cols=106  Identities=22%  Similarity=0.222  Sum_probs=90.2

Q ss_pred             CCCCCchhhHHHHHhhhccC-CCCC--CCCC------------------CCCCCCCCCcccccccccccCCceecCCC-c
Q 008437           35 GVHNGNEHAFDRQLSKLCSF-NFRP--NNRR------------------SGQMPLPPEELRCPISLQLMYDPVIIASG-Q   92 (565)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~------------------~~~~~~~p~~f~CpI~~~~m~dPV~~~~g-~   92 (565)
                      .||+|+.+.|.++...++.. ..++  .-.+                  +.+..++|++|+|||++++|+|||++++| +
T Consensus       833 DgRSy~~elF~~a~~il~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~  912 (968)
T 3m62_A          833 DERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKM  912 (968)
T ss_dssp             CTTTCCHHHHHHHHHHHTTSTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSSEEECTTTCC
T ss_pred             cCCCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHhCCeEcCCCCE
Confidence            48999999999999887543 3432  1000                  12357899999999999999999999997 7


Q ss_pred             ccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 008437           93 TYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV  141 (565)
Q Consensus        93 ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~  141 (565)
                      ||||.+|++|+.. +.+||.|+++|++.+++||++||..|++||.+++-
T Consensus       913 TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~  960 (968)
T 3m62_A          913 NIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE  960 (968)
T ss_dssp             EEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             EECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence            9999999999986 67999999999999999999999999999998864

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.64  E-value=3.3e-17  Score=126.02  Aligned_cols=55  Identities=22%  Similarity=0.312  Sum_probs=50.3

Q ss_pred             cccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHH
Q 008437           72 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYC  127 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~  127 (565)
                      .|.||||+++|+|||++ +|||||||.+|++|+.+ +.+||+|+++|...+|+||+.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~   58 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP   58 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence            58999999999999999 89999999999999986 457999999999999999853

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.63  E-value=6.5e-16  Score=129.25  Aligned_cols=77  Identities=27%  Similarity=0.450  Sum_probs=69.2

Q ss_pred             CCCCCCcccccccccccCCceecC-CCcccchHHHHHHHhc-CCCCCCCCCCCC-CCCCCcccHHHHHHHHHHHHHcCCC
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSD-GHSTCPKTQQKL-PHLCLTPNYCVKGLIASWCEMNGVS  142 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~-~~~~cP~t~~~l-~~~~l~pn~~l~~~i~~~~~~~~~~  142 (565)
                      ...++++|.||||+++|.|||+++ |||+||+.||++|+.. +..+||.|++++ ....+.||..|+++|+.|...+++.
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~   86 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT   86 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred             cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence            456789999999999999999999 9999999999999975 457899999997 5678999999999999999988763

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.50  E-value=1.6e-14  Score=127.72  Aligned_cols=69  Identities=13%  Similarity=0.333  Sum_probs=63.4

Q ss_pred             CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHH
Q 008437           69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH-LCLTPNYCVKGLIASWCE  137 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~-~~l~pn~~l~~~i~~~~~  137 (565)
                      ++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..|+.+|+.|..
T Consensus        49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p  118 (124)
T 3fl2_A           49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP  118 (124)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred             CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence            467899999999999999999999999999999999766799999999987 789999999999998854

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.49  E-value=6.2e-15  Score=143.71  Aligned_cols=70  Identities=19%  Similarity=0.256  Sum_probs=63.7

Q ss_pred             CCCcccccccccccCCceec-CCCcccchHHHHHHHhc-CCCCCCC--CCCCCCCCCCcccHHHHHHHHHHHHH
Q 008437           69 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPK--TQQKLPHLCLTPNYCVKGLIASWCEM  138 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~-~~~~cP~--t~~~l~~~~l~pn~~l~~~i~~~~~~  138 (565)
                      ...+|.||||+++|+|||++ .|||+|||.||++||.. +..+||+  |++.+...+|+||..|+++|+.|..+
T Consensus       178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            35789999999999999985 99999999999999986 4568999  98999999999999999999999774

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.47  E-value=1.3e-12  Score=142.72  Aligned_cols=274  Identities=16%  Similarity=0.195  Sum_probs=210.7

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      |.+..|+.+|++..-.+.|+.|+..|+.+++   +++..++ .++++.|+..|...  ..|.++-..++.+|.++...++
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk---~y~~~Vg-~~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVG-IQAMEHLIHVLQTD--RSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT---TTTTHHH-HHTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHCCC-
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHH---HhHHHhh-hhhHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCCC
Confidence            6899999999987678999999999999986   3566555 55699999999874  3688888889999988754332


Q ss_pred             h-----------------hhHHH-HhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC--CCchhhcc-CCchHHHHHH
Q 008437          296 R-----------------NKELM-LAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD--DAKPIIGS-SHAVPFLVEL  352 (565)
Q Consensus       296 ~-----------------nk~~i-~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~--~~k~~I~~-~g~i~~Lv~l  352 (565)
                      .                 +...+ .+.+.|+.|+.+|++.+.  +..++.+|..|+...  .++..|.. .++|+.||.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l  174 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL  174 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence            2                 11233 345789999999998754  566888888887553  36777774 6999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHhccCCCChHHHHH-cCchHHHhhccCCC----ChHHHHHHHHHHHHHhcCc-ccHHHHhcC
Q 008437          353 CKGKTEHQCKLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVPG----DPMWTEKSLAVLLNLAASA-AGKEEMNST  426 (565)
Q Consensus       353 L~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~-~G~v~~Lv~Ll~~~----~~~~~e~al~~L~nLa~~~-~~r~~i~~~  426 (565)
                      |.+. ...++..|+..|.+|+.+..+..+++. +|+++.|+.++...    ...+.+.|+.+|.||.... .++..+.+.
T Consensus       175 L~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt  253 (651)
T 3grl_A          175 LADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEG  253 (651)
T ss_dssp             GGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence            9988 888999999999999998888777777 69999999977542    3478899999999999854 477788886


Q ss_pred             CCCHHHHHHHhhcCCH------HHHHH---HHHHHHHhhcCC------hHHHHHHHhCCcHHHHHHhhhcC--ChhHHHH
Q 008437          427 PGLVSGLATVLDTGEL------IEQEQ---AVSCLFLLCNGN------EKCCQMVLQEGVIPALVSISVNG--STRGRDK  489 (565)
Q Consensus       427 ~g~v~~Lv~lL~~~s~------~~~e~---Av~~L~~Lc~~~------~~~~~~v~~~G~v~~Lv~L~~~~--s~~~k~~  489 (565)
                       ++++.|+.+|....+      ....+   ++.++..|+..+      ..++..+.+.|+++.|+.++...  ...++..
T Consensus       254 -~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~  332 (651)
T 3grl_A          254 -SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTE  332 (651)
T ss_dssp             -TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred             -CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence             999999999975322      12233   566667777653      24567888999999999877654  5666766


Q ss_pred             HHHHHHHH
Q 008437          490 AQRLLMLF  497 (565)
Q Consensus       490 A~~lL~~L  497 (565)
                      |..++..+
T Consensus       333 Al~tla~~  340 (651)
T 3grl_A          333 TINTVSEV  340 (651)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665553

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.47  E-value=2.4e-14  Score=130.77  Aligned_cols=69  Identities=17%  Similarity=0.369  Sum_probs=63.7

Q ss_pred             CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC-CCcccHHHHHHHHHHHH
Q 008437           69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL-CLTPNYCVKGLIASWCE  137 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-~l~pn~~l~~~i~~~~~  137 (565)
                      ++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++... .+.+|..|+.+|+.|..
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            4678999999999999999999999999999999997677899999999877 89999999999998863

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.41  E-value=1.3e-13  Score=116.89  Aligned_cols=70  Identities=26%  Similarity=0.412  Sum_probs=64.2

Q ss_pred             CCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 008437           69 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN  139 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~  139 (565)
                      +++++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++...++.+|..++++|+.|....
T Consensus        19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~   89 (99)
T 2y43_A           19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR   89 (99)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence            45679999999999999988 89999999999999985 578999999998888999999999999998765

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.37  E-value=2.3e-14  Score=116.12  Aligned_cols=67  Identities=25%  Similarity=0.477  Sum_probs=58.6

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcC------CCCCCCCCCCCCCCCCcccHHHHHHH
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDG------HSTCPKTQQKLPHLCLTPNYCVKGLI  132 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~------~~~cP~t~~~l~~~~l~pn~~l~~~i  132 (565)
                      ...+.+++.||||++.|.|||+++|||+||+.||.+|+...      ..+||.|++++...++.+|+.|+++|
T Consensus         6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv   78 (79)
T 2egp_A            6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV   78 (79)
T ss_dssp             SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred             HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence            34567899999999999999999999999999999999853      67899999999888899998776543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.37  E-value=1.2e-13  Score=113.16  Aligned_cols=67  Identities=30%  Similarity=0.617  Sum_probs=58.9

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD-----GHSTCPKTQQKLPHLCLTPNYCVKGLI  132 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~-----~~~~cP~t~~~l~~~~l~pn~~l~~~i  132 (565)
                      ...+.++|.||||++.|.|||+++|||+||+.||.+|+..     +...||.|++++...++.||..|+++|
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecw_A           13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV   84 (85)
T ss_dssp             CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred             HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence            4456789999999999999999999999999999999986     367899999999988999998766543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.36  E-value=8.1e-13  Score=105.76  Aligned_cols=62  Identities=32%  Similarity=0.512  Sum_probs=52.3

Q ss_pred             CCCCCCCCcccccccccccCCceecC-CCcccchHHHHHHHhc-CCCCCCCCCCCCC-CCCCccc
Q 008437           64 GQMPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSD-GHSTCPKTQQKLP-HLCLTPN  125 (565)
Q Consensus        64 ~~~~~~p~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~-~~~l~pn  125 (565)
                      .....+++++.||||+++|.|||+++ |||+||+.||++|+.. +..+||.|++++. ...+.+|
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A            7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            34566789999999999999999999 9999999999999985 3478999999854 4456666

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.36  E-value=3.1e-13  Score=116.47  Aligned_cols=68  Identities=13%  Similarity=0.308  Sum_probs=61.2

Q ss_pred             CCCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHH
Q 008437           68 LPPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHL----CLTPNYCVKGLIASWC  136 (565)
Q Consensus        68 ~~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~----~l~pn~~l~~~i~~~~  136 (565)
                      .+++++.||||+++|.|||++ +|||+||+.||.+|+.. ..+||.|++++...    .+.+|..+.++|+.|.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~   83 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV   83 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence            356789999999999999998 99999999999999986 48899999998765    7899999999998874

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=2.8e-13  Score=110.38  Aligned_cols=66  Identities=15%  Similarity=0.201  Sum_probs=56.4

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIA  133 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~  133 (565)
                      .....+++.||||++.|.|||+++|||+||+.||.+|+.. ..+||.|++++. ..+.||..+...++
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~~   74 (81)
T 2csy_A            9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKLQ   74 (81)
T ss_dssp             SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHHS
T ss_pred             cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHHH
Confidence            3445678999999999999999999999999999999975 678999999986 67889966655543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.8e-13  Score=112.16  Aligned_cols=67  Identities=25%  Similarity=0.557  Sum_probs=58.8

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD-----GHSTCPKTQQKLPHLCLTPNYCVKGLI  132 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~-----~~~~cP~t~~~l~~~~l~pn~~l~~~i  132 (565)
                      ...+.+++.||||++.|.|||+++|||+||+.||.+|+..     +..+||.|++++...++.||+.|+++|
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecv_A           13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV   84 (85)
T ss_dssp             CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred             HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence            4456789999999999999999999999999999999975     467899999999988899998766543

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.35  E-value=3.6e-13  Score=114.44  Aligned_cols=71  Identities=18%  Similarity=0.348  Sum_probs=63.9

Q ss_pred             CCCcccccccccccCCcee-cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 008437           69 PPEELRCPISLQLMYDPVI-IASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN  139 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~-~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~  139 (565)
                      +.++|.||||+++|.|||+ ++|||+||+.||.+|+.....+||.|+.++...++++|..+..+++......
T Consensus        19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~   90 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ   90 (100)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred             CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence            4568999999999999999 9999999999999999976579999999999899999999999888776544

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.34  E-value=4.4e-13  Score=117.42  Aligned_cols=69  Identities=28%  Similarity=0.449  Sum_probs=62.9

Q ss_pred             CCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 008437           67 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW  135 (565)
Q Consensus        67 ~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~  135 (565)
                      ..++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++...++.||..+++.|..+
T Consensus        13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l   81 (118)
T 3hct_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (118)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence            356789999999999999999999999999999999987666999999999988899999999998764

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.34  E-value=4e-13  Score=117.48  Aligned_cols=68  Identities=16%  Similarity=0.310  Sum_probs=62.6

Q ss_pred             CCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 008437           69 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN  139 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~  139 (565)
                      +.++|.||||+++|.|||++ +|||+||+.||.+|+.   ..||.|++++...++.+|..|+++|+.|....
T Consensus        19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~   87 (117)
T 1jm7_B           19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (117)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence            35689999999999999999 9999999999999997   67999999998889999999999999997754

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.6e-12  Score=101.53  Aligned_cols=57  Identities=14%  Similarity=0.341  Sum_probs=50.3

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL  122 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l  122 (565)
                      ...+++++.||||++.|.|||+++|||+||+.||++|+..+..+||.|++++...++
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A            9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            344578999999999999999999999999999999997667899999999876554

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.33  E-value=3.1e-13  Score=117.78  Aligned_cols=69  Identities=16%  Similarity=0.335  Sum_probs=61.8

Q ss_pred             CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC-------CCCcccHHHHHHHHHHHH
Q 008437           69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH-------LCLTPNYCVKGLIASWCE  137 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~-------~~l~pn~~l~~~i~~~~~  137 (565)
                      ..++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++..       ..+.+|..|..+|+.|..
T Consensus        12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p   87 (115)
T 3l11_A           12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP   87 (115)
T ss_dssp             CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred             CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence            347899999999999999999999999999999998778899999999863       567889999999998853

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2.1e-12  Score=102.67  Aligned_cols=61  Identities=18%  Similarity=0.309  Sum_probs=54.0

Q ss_pred             CCCCCCCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437           64 GQMPLPPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN  125 (565)
Q Consensus        64 ~~~~~~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn  125 (565)
                      .....+.+++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++...++.+|
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A            7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            3455677899999999999999997 99999999999999986 6789999999988777766

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.32  E-value=5.8e-13  Score=123.69  Aligned_cols=70  Identities=26%  Similarity=0.441  Sum_probs=62.5

Q ss_pred             CCCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCC-CCCCcccHHHHHHHHHHHH
Q 008437           68 LPPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLP-HLCLTPNYCVKGLIASWCE  137 (565)
Q Consensus        68 ~~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~-~~~l~pn~~l~~~i~~~~~  137 (565)
                      .+.+++.||||++.|.|||++ +|||+||+.||.+|+..+..+||.|+.++. ...+.||..|.++|..|..
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            456789999999999999987 999999999999999987889999999985 4569999999999998844

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.31  E-value=1.8e-10  Score=125.98  Aligned_cols=278  Identities=16%  Similarity=0.131  Sum_probs=208.4

Q ss_pred             hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCcc-----------------chhh-hhccCCHHHHHHHhcccccCCC
Q 008437          216 ERYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEE-----------------ARVF-TGANGFVVALLRFLESAVCERN  276 (565)
Q Consensus       216 e~i~~ll~~L~s~-~~~~~q~~Al~~L~~La~~~~~-----------------~r~~-i~~~G~i~~Lv~lL~s~~~s~~  276 (565)
                      .+++.|+..|+.. .|.+.-..+++.|..+...+++                 +... +.+.+.|+.|+.+|.+    .+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~----~d  135 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE----FD  135 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC----CC
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC----cc
Confidence            5688899999764 4778888889999887654432                 1122 3457899999999987    78


Q ss_pred             HHHHHHHHHHHHHhhccCch-hhHHHHhc-CchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC-CchhhccCCchHHHHH
Q 008437          277 SYAQEIGAMALFNLAVNNNR-NKELMLAA-GVIPLLEKMISNSNS--HGAATALYLNLSFLDD-AKPIIGSSHAVPFLVE  351 (565)
Q Consensus       277 ~~~q~~A~~aL~nLa~~~~~-nk~~i~~~-G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~-~k~~I~~~g~i~~Lv~  351 (565)
                      ..++..+++.|..|+...+. +.+.|..+ ++|+.|+.+|+....  +-.|+.+|.+|+.+.. .+..+.-.|+++.|+.
T Consensus       136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~  215 (651)
T 3grl_A          136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLD  215 (651)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHH
Confidence            99999999999999876655 67888855 999999999997643  4558888999988754 4555555799999999


Q ss_pred             HhcCCC---CHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCCCChH------HHH---HHHHHHHHHhcCc-
Q 008437          352 LCKGKT---EHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPM------WTE---KSLAVLLNLAASA-  417 (565)
Q Consensus       352 lL~~~~---~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~------~~e---~al~~L~nLa~~~-  417 (565)
                      +++.+.   ...+..+++.+|.||..+. .|+..+.+.|+++.|..++..++..      ...   .++.++..|+... 
T Consensus       216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~  295 (651)
T 3grl_A          216 IITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN  295 (651)
T ss_dssp             HHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred             HHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence            998641   2368899999999999765 5999999999999999987543211      122   3777788887742 


Q ss_pred             ------ccHHHHhcCCCCHHHHHHHhhcC--CHHHHHHHHHHHHHhhcCChHHHHHHHhCC-----cHHHHHH----hhh
Q 008437          418 ------AGKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVSCLFLLCNGNEKCCQMVLQEG-----VIPALVS----ISV  480 (565)
Q Consensus       418 ------~~r~~i~~~~g~v~~Lv~lL~~~--s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G-----~v~~Lv~----L~~  480 (565)
                            .++.++.++ |++..|++++...  ...++..|+.++..+.+++......+.+.-     ..|.++.    +..
T Consensus       296 ~~~~t~~nQ~~~~~~-g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~  374 (651)
T 3grl_A          296 PPGATSSCQKAMFQC-GLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVN  374 (651)
T ss_dssp             CHHHHHHHHHHHHHT-THHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHC-CCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhc
Confidence                  356677886 9999999998764  678999999999999999987777766542     2334433    333


Q ss_pred             c-CChhHHHHHHHHHHHHH
Q 008437          481 N-GSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       481 ~-~s~~~k~~A~~lL~~L~  498 (565)
                      + .....|-.|...++.+-
T Consensus       375 ~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          375 ERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             TTSCHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHH
Confidence            3 35677777777777754

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.28  E-value=1.5e-12  Score=112.61  Aligned_cols=68  Identities=24%  Similarity=0.488  Sum_probs=60.1

Q ss_pred             CCcccccccccccCCceecCCCcccchHHHHHHHhcC--CCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 008437           70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDG--HSTCPKTQQKLPHLCLTPNYCVKGLIASWCE  137 (565)
Q Consensus        70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~  137 (565)
                      .+++.||||++.|.|||+++|||+||+.||.+|+...  ..+||.|++++...++.+|..+..+++.+..
T Consensus        19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999853  3689999999999899999887777777754

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.23  E-value=3.6e-12  Score=114.73  Aligned_cols=64  Identities=19%  Similarity=0.486  Sum_probs=53.1

Q ss_pred             CCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 008437           70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWC  136 (565)
Q Consensus        70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~  136 (565)
                      .++|.||||++.|.|||+++|||+||+.||.+|+.. ..+||.|++++...  .+|..+...|..+.
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV  114 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence            467899999999999999999999999999999985 67899999988643  34566666666554

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.1e-11  Score=98.58  Aligned_cols=57  Identities=26%  Similarity=0.528  Sum_probs=49.8

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhc--CCCCCCCCCCCCCCCCC
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKTQQKLPHLCL  122 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~t~~~l~~~~l  122 (565)
                      ...+.+++.||||++.|.|||+++|||+||+.||.+|+..  +..+||.|++++...++
T Consensus        14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            3456789999999999999999999999999999999973  56789999999876554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.20  E-value=6.7e-12  Score=117.01  Aligned_cols=69  Identities=28%  Similarity=0.449  Sum_probs=62.8

Q ss_pred             CCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 008437           67 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW  135 (565)
Q Consensus        67 ~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~  135 (565)
                      ..++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++...++.||..+++.|..+
T Consensus        13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            356789999999999999999999999999999999987667999999999988899999999988753

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.19  E-value=9.4e-12  Score=96.79  Aligned_cols=55  Identities=18%  Similarity=0.436  Sum_probs=50.1

Q ss_pred             Cccccccccc-ccCCc----eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437           71 EELRCPISLQ-LMYDP----VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN  125 (565)
Q Consensus        71 ~~f~CpI~~~-~m~dP----V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn  125 (565)
                      +++.||||++ .+.+|    |+++|||+||+.||++|+..+...||.|++++...++.|+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            5789999999 99999    5789999999999999998777889999999988888776

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.19  E-value=8.7e-12  Score=108.70  Aligned_cols=66  Identities=24%  Similarity=0.355  Sum_probs=56.7

Q ss_pred             CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 008437           69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT-PNYCVKGLIAS  134 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~-pn~~l~~~i~~  134 (565)
                      ++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++...++. ++..+.++|..
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~   86 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS   86 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence            4578999999999999999999999999999999997678899999999877765 55666666643

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.19  E-value=2.2e-12  Score=116.47  Aligned_cols=66  Identities=15%  Similarity=0.305  Sum_probs=56.7

Q ss_pred             CCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC---------CCCCcccHHHHHHHH
Q 008437           68 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP---------HLCLTPNYCVKGLIA  133 (565)
Q Consensus        68 ~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~---------~~~l~pn~~l~~~i~  133 (565)
                      .+.++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.         ...+.|+..+++.|.
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~  101 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE  101 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence            356899999999999999999999999999999999877779999988643         234668888888885

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=2.6e-11  Score=93.59  Aligned_cols=48  Identities=31%  Similarity=0.602  Sum_probs=42.8

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhc--CCCCCCCC
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKT  113 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~t  113 (565)
                      ...+.+++.||||++.|.|||+++|||+||+.||++|+..  +..+||.|
T Consensus        14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            3456789999999999999999999999999999999985  46789987

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=6.9e-11  Score=89.41  Aligned_cols=48  Identities=29%  Similarity=0.714  Sum_probs=42.7

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhc--CCCCCCCC
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKT  113 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~t  113 (565)
                      ...+.+++.||||++.|.|||+++|||+||+.||.+|+..  +..+||.|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            4456688999999999999999999999999999999865  56889987

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.09  E-value=5e-09  Score=99.88  Aligned_cols=188  Identities=17%  Similarity=0.135  Sum_probs=152.5

Q ss_pred             ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC
Q 008437          257 ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD  334 (565)
Q Consensus       257 ~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~  334 (565)
                      ..+.++.|+.+|.+    .+..++..|+.+|..+.  .         .++++.|+.+|.+++.  +..|+.+|..+.   
T Consensus        17 ~~~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---   78 (211)
T 3ltm_A           17 DPEKVEMYIKNLQD----DSYYVRRAAAYALGKIG--D---------ERAVEPLIKALKDEDAWVRRAAADALGQIG---   78 (211)
T ss_dssp             CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---
T ss_pred             CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHhC--C---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---
Confidence            46789999999987    78999999999998764  1         3578999999988754  455777776553   


Q ss_pred             CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437          335 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA  414 (565)
Q Consensus       335 ~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa  414 (565)
                             ..++++.|+++|.+. ++.++..|+.+|..+..          .++++.|+.++.+.+..++..++.+|..+.
T Consensus        79 -------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  140 (211)
T 3ltm_A           79 -------DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG  140 (211)
T ss_dssp             -------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             -------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence                   356889999999988 99999999999998853          358899999888899999999999999884


Q ss_pred             cCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHH
Q 008437          415 ASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL  494 (565)
Q Consensus       415 ~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL  494 (565)
                      .           +..++.|..++.+.++.++..|+.+|..+..           ..+++.|..++.+.++.+|..|...|
T Consensus       141 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL  198 (211)
T 3ltm_A          141 D-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL  198 (211)
T ss_dssp             C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            3           3578999999998999999999999998843           24577888888899999999999999


Q ss_pred             HHHHhhcc
Q 008437          495 MLFREQRQ  502 (565)
Q Consensus       495 ~~L~~~r~  502 (565)
                      ..+.....
T Consensus       199 ~~~~~~~~  206 (211)
T 3ltm_A          199 ETHKSFNH  206 (211)
T ss_dssp             HC------
T ss_pred             HhcCCCCC
Confidence            98875533

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.09  E-value=3.5e-11  Score=95.08  Aligned_cols=57  Identities=26%  Similarity=0.583  Sum_probs=51.0

Q ss_pred             CCCcccccccccccCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 008437           69 PPEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY  126 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~  126 (565)
                      ..+++.||||++.|.+|       ++++|||+|++.||.+|+.. ..+||.|++++...++.|++
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence            34789999999999999       89999999999999999986 57899999999988887763

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=5.4e-11  Score=94.16  Aligned_cols=51  Identities=20%  Similarity=0.346  Sum_probs=45.8

Q ss_pred             CCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           68 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        68 ~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      ...+++.||||++.|.|||+++|||+||+.||.+|+.. ..+||+|++++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE   61 (71)
T ss_dssp             SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred             cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence            34578999999999999999999999999999999986 5789999998764

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.7e-10  Score=95.07  Aligned_cols=56  Identities=27%  Similarity=0.511  Sum_probs=48.7

Q ss_pred             CCCCCCCcccccccccccCC----ceecCCCcccchHHHHHHHhcC--CCCCCCCCCCCCCC
Q 008437           65 QMPLPPEELRCPISLQLMYD----PVIIASGQTYERICIEKWLSDG--HSTCPKTQQKLPHL  120 (565)
Q Consensus        65 ~~~~~p~~f~CpI~~~~m~d----PV~~~~g~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~  120 (565)
                      ....+.+++.||||++.|.|    |++++|||+||+.||.+|+...  ..+||.|++++...
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A            8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            34456788999999999999    9999999999999999999864  57899999987653

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.07  E-value=7.6e-09  Score=98.62  Aligned_cols=186  Identities=15%  Similarity=0.163  Sum_probs=150.2

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.+..|+..|.+. ++.+|..|+..|..+..           .++++.|+.+|.+    .+..++..|+.+|..+.  + 
T Consensus        19 ~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~--~-   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKD----EDAWVRRAAADALGQIG--D-   79 (211)
T ss_dssp             GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC----SCHHHHHHHHHHHHHHC--C-
T ss_pred             hHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcC----CCHHHHHHHHHHHHhhC--C-
Confidence            4578899999987 99999999999987642           4679999999987    68999999999998874  1 


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS  373 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs  373 (565)
                              .++++.|+.+|.+++.  +..|+.+|..+.          ..++++.|+.+|.++ ++.++..|+.+|..+.
T Consensus        80 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~  140 (211)
T 3ltm_A           80 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDE-DWFVRIAAAFALGEIG  140 (211)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC
Confidence                    3568999999987754  455777776653          346889999999988 9999999999999984


Q ss_pred             cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437          374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF  453 (565)
Q Consensus       374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~  453 (565)
                      .          ..+++.|+.++.+.++.++..++.+|..+..           +.+++.|..++.+.++.++..|+.+|.
T Consensus       141 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~  199 (211)
T 3ltm_A          141 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE  199 (211)
T ss_dssp             C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3          3578999998888899999999999999843           356788999999999999999999999


Q ss_pred             HhhcCCh
Q 008437          454 LLCNGNE  460 (565)
Q Consensus       454 ~Lc~~~~  460 (565)
                      .+.....
T Consensus       200 ~~~~~~~  206 (211)
T 3ltm_A          200 THKSFNH  206 (211)
T ss_dssp             C------
T ss_pred             hcCCCCC
Confidence            8876554

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.07  E-value=5.8e-09  Score=103.96  Aligned_cols=222  Identities=12%  Similarity=0.070  Sum_probs=160.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .+..|+..|.+. ++.+|..|+..|..+.           ..++++.|+.+|.+    .+..++..|+.+|..+.. ...
T Consensus        24 ~i~~L~~~L~~~-~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d----~~~~vR~~A~~aL~~l~~-~~~   86 (280)
T 1oyz_A           24 NDDELFRLLDDH-NSLKRISSARVLQLRG-----------GQDAVRLAIEFCSD----KNYIRRDIGAFILGQIKI-CKK   86 (280)
T ss_dssp             CHHHHHHHTTCS-SHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCC-CTT
T ss_pred             hHHHHHHHHHcC-CHHHHHHHHHHHHccC-----------CchHHHHHHHHHcC----CCHHHHHHHHHHHHHhcc-ccc
Confidence            467889999887 8999999999998875           23468899999987    688999999999998853 221


Q ss_pred             hhHHHHhcCchHHHHH-HhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437          297 NKELMLAAGVIPLLEK-MISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS  373 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~-lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs  373 (565)
                      ...     ..++.|.. ++..++  .+..|+.+|..+.....    .....+++.|+.+|.++ ++.++..|+.+|.++.
T Consensus        87 ~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~-~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           87 CED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK-STNVRRATAFAISVIN  156 (280)
T ss_dssp             THH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC-
T ss_pred             cch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCC-CHHHHHHHHHHHHhcC
Confidence            111     13344443 344443  35667888877642210    11235789999999988 8999999999998875


Q ss_pred             cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437          374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF  453 (565)
Q Consensus       374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~  453 (565)
                      .          .++++.|+.++.+.+..++..++.+|..+....         +..++.|+.+|.+.++.++..|+.+|.
T Consensus       157 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~  217 (280)
T 1oyz_A          157 D----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLS  217 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            3          358899999888888999999999998874321         246788889998889999999999998


Q ss_pred             HhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437          454 LLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF  497 (565)
Q Consensus       454 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L  497 (565)
                      .+.           ...+++.|+.++.+.+  ++..|...|..+
T Consensus       218 ~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i  248 (280)
T 1oyz_A          218 YRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGEL  248 (280)
T ss_dssp             HTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred             HhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence            876           2356777777766543  666666666655

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.05  E-value=1.4e-08  Score=95.89  Aligned_cols=182  Identities=14%  Similarity=0.167  Sum_probs=150.8

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      .....++..|.+. ++.+|..|+..|..+..           .++++.|+.+|.+    .+..++..|+.+|..+.  + 
T Consensus        14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~--~-   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKD----EDAWVRRAAADALGQIG--D-   74 (201)
T ss_dssp             HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC--C-
T ss_pred             cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcC----CCHHHHHHHHHHHHhhC--C-
Confidence            4668899999998 99999999999987652           3578999999976    68899999999998874  2 


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS  373 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs  373 (565)
                              .++++.|+.+|.+++.  +..|+.+|..+.          ...+++.|+.+|.+. ++.++..|+.+|..+.
T Consensus        75 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~  135 (201)
T 3ltj_A           75 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDE-DWFVRIAAAFALGEIG  135 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHT
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence                    2568999999987754  456777776653          346899999999988 9999999999999885


Q ss_pred             cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437          374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF  453 (565)
Q Consensus       374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~  453 (565)
                      .          .++++.|+.++.+.+..++..|+.+|..+..           +.+++.|..++.+.++.+++.|+.+|.
T Consensus       136 ~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~  194 (201)
T 3ltj_A          136 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE  194 (201)
T ss_dssp             C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3          4688999998888899999999999999832           256788999999999999999999998


Q ss_pred             Hhh
Q 008437          454 LLC  456 (565)
Q Consensus       454 ~Lc  456 (565)
                      .|-
T Consensus       195 ~l~  197 (201)
T 3ltj_A          195 THK  197 (201)
T ss_dssp             HCC
T ss_pred             HHH
Confidence            764

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=2.5e-10  Score=89.47  Aligned_cols=53  Identities=25%  Similarity=0.527  Sum_probs=46.8

Q ss_pred             CCCCCCcccccccccccCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           66 MPLPPEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      ....++++.||||++.|.+|       |+++|||+|++.||.+|+.. +.+||.|++++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A            9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            34456889999999999999       89999999999999999986 6789999988753

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.00  E-value=8.4e-11  Score=90.72  Aligned_cols=54  Identities=24%  Similarity=0.512  Sum_probs=48.9

Q ss_pred             CcccccccccccCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437           71 EELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN  125 (565)
Q Consensus        71 ~~f~CpI~~~~m~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn  125 (565)
                      +++.||||++.|.+|       ++++|||+|++.||.+|+.. +.+||.|++++...++.|+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   62 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   62 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence            468899999999998       88999999999999999986 6789999999988887765

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.99  E-value=1.5e-08  Score=95.78  Aligned_cols=185  Identities=18%  Similarity=0.148  Sum_probs=152.3

Q ss_pred             hccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC
Q 008437          256 GANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL  333 (565)
Q Consensus       256 ~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~  333 (565)
                      ...+..+.++.+|.+    .++.++..|+.+|..+.  +         .+.++.|+.+|.+++.  +..|+.+|..+   
T Consensus        11 ~~~~~~~~~i~~L~~----~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~---   72 (201)
T 3ltj_A           11 TDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIG--D---------ERAVEPLIKALKDEDAWVRRAAADALGQI---   72 (201)
T ss_dssp             CCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---
T ss_pred             cCCcchHHHHHHhcC----CCHHHHHHHHHHHHhcC--C---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh---
Confidence            345678899999988    78999999999998874  1         2568999999987754  45567677554   


Q ss_pred             CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH
Q 008437          334 DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL  413 (565)
Q Consensus       334 ~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL  413 (565)
                             +...+++.|+.+|.+. ++.++..|+.+|..+..          ..+++.|+.++.+.++.++..|+.+|..+
T Consensus        73 -------~~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  134 (201)
T 3ltj_A           73 -------GDERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI  134 (201)
T ss_dssp             -------CCGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             -------CCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence                   2346899999999988 99999999999998753          35889999988888999999999999988


Q ss_pred             hcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHH
Q 008437          414 AASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL  493 (565)
Q Consensus       414 a~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~l  493 (565)
                      ..           +..++.|+.++.+.++.++..|+.+|..+..           ..+++.|..++.+.++.+|..|...
T Consensus       135 ~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~a  192 (201)
T 3ltj_A          135 GD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY  192 (201)
T ss_dssp             TC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence            53           3688999999999999999999999998832           2357788888899999999999999


Q ss_pred             HHHHH
Q 008437          494 LMLFR  498 (565)
Q Consensus       494 L~~L~  498 (565)
                      |..+.
T Consensus       193 L~~l~  197 (201)
T 3ltj_A          193 LETHK  197 (201)
T ss_dssp             HHHCC
T ss_pred             HHHHH
Confidence            98764

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.99  E-value=4.4e-10  Score=90.47  Aligned_cols=58  Identities=21%  Similarity=0.425  Sum_probs=49.2

Q ss_pred             CCCCCcccccccccccCCce---ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437           67 PLPPEELRCPISLQLMYDPV---IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN  125 (565)
Q Consensus        67 ~~~p~~f~CpI~~~~m~dPV---~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn  125 (565)
                      ....+++.||||++.|.+|.   +++|||+|++.||.+|+.. +.+||.|++++....+.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred             ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence            34457899999999999874   5699999999999999975 5799999999988777665

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.94  E-value=7.2e-10  Score=89.33  Aligned_cols=55  Identities=18%  Similarity=0.427  Sum_probs=46.9

Q ss_pred             CCCCccccccccccc--CCceecC--CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 008437           68 LPPEELRCPISLQLM--YDPVIIA--SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL  122 (565)
Q Consensus        68 ~~p~~f~CpI~~~~m--~dPV~~~--~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l  122 (565)
                      ...+++.||||++.|  .||++.+  |||+||+.||.+|+..+...||.|++++....+
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            456789999999998  5777776  999999999999998777899999999876543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.81  E-value=1.7e-07  Score=93.25  Aligned_cols=198  Identities=13%  Similarity=0.029  Sum_probs=148.6

Q ss_pred             hccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC
Q 008437          256 GANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL  333 (565)
Q Consensus       256 ~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~  333 (565)
                      ...+.++.|+..|.+    .+..++..|+.+|.++.  +         .++++.|+.+|.+++.  +..|+.+|..+...
T Consensus        20 ~~~~~i~~L~~~L~~----~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~   84 (280)
T 1oyz_A           20 CKKLNDDELFRLLDD----HNSLKRISSARVLQLRG--G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC   84 (280)
T ss_dssp             HHTSCHHHHHHHTTC----SSHHHHHHHHHHHHHHC--C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred             HHHhhHHHHHHHHHc----CCHHHHHHHHHHHHccC--C---------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence            346789999999987    68899999999999875  1         2468899999988754  45677788776532


Q ss_pred             CCCchhhccCCchHHHHH-HhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHH
Q 008437          334 DDAKPIIGSSHAVPFLVE-LCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLN  412 (565)
Q Consensus       334 ~~~k~~I~~~g~i~~Lv~-lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~n  412 (565)
                      ...   +  ...++.|.+ ++.+. ++.++..|+.+|.++......    ....+++.|+.++.+.++.++..++.+|.+
T Consensus        85 ~~~---~--~~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~  154 (280)
T 1oyz_A           85 KKC---E--DNVFNILNNMALNDK-SACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISV  154 (280)
T ss_dssp             TTT---H--HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             ccc---c--hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence            211   0  012333432 34556 899999999999998742211    123467888888888999999999999987


Q ss_pred             HhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHH
Q 008437          413 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR  492 (565)
Q Consensus       413 La~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~  492 (565)
                      +..           +..++.|+.++.+.++.++..|+.+|..+...++         .+++.|+.++.+.++.+|..|..
T Consensus       155 ~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~  214 (280)
T 1oyz_A          155 IND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAII  214 (280)
T ss_dssp             C--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             cCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHH
Confidence            743           3689999999999999999999999998864433         35678888888999999999999


Q ss_pred             HHHHHH
Q 008437          493 LLMLFR  498 (565)
Q Consensus       493 lL~~L~  498 (565)
                      .|..+.
T Consensus       215 aL~~~~  220 (280)
T 1oyz_A          215 GLSYRK  220 (280)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            887764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=1.1e-09  Score=86.11  Aligned_cols=54  Identities=22%  Similarity=0.514  Sum_probs=47.1

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC  121 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~  121 (565)
                      .....+++.||||++.+.+ |+++|||+|++.||.+|+. ...+||.|++++...+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A            9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred             hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence            4455678999999999999 9999999999999999998 4789999998886543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.79  E-value=3.4e-09  Score=82.77  Aligned_cols=48  Identities=23%  Similarity=0.566  Sum_probs=42.5

Q ss_pred             CcccccccccccCCc-eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYDP-VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        71 ~~f~CpI~~~~m~dP-V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      ++..||||++.+.|| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence            467899999999998 68899999999999999986 5789999988753

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.79  E-value=1.6e-09  Score=96.14  Aligned_cols=55  Identities=24%  Similarity=0.512  Sum_probs=49.6

Q ss_pred             CCcccccccccccCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437           70 PEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN  125 (565)
Q Consensus        70 p~~f~CpI~~~~m~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn  125 (565)
                      ++++.||||++.|.||       |+++|||+|++.||.+|+.. ..+||.|++++....+.++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence            5789999999999999       99999999999999999986 5689999999987777665

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=7.2e-09  Score=82.37  Aligned_cols=53  Identities=17%  Similarity=0.353  Sum_probs=45.3

Q ss_pred             CCCCCCcccccccccccCCceec---CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           66 MPLPPEELRCPISLQLMYDPVII---ASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~---~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      .....++..||||++.|.+|+.+   +|||+|++.||.+|+.. +.+||.|++++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~   64 (74)
T 2ep4_A            9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred             cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence            34456788999999999988755   99999999999999986 4689999998754

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.78  E-value=4.1e-09  Score=78.59  Aligned_cols=47  Identities=26%  Similarity=0.542  Sum_probs=41.9

Q ss_pred             CcccccccccccCC----ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYD----PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        71 ~~f~CpI~~~~m~d----PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      +++.||||++.|.+    |++++|||+|++.||.+|+..+ .+||.|++++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            46789999999977    8889999999999999999874 88999998764

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.77  E-value=1.7e-09  Score=81.36  Aligned_cols=46  Identities=24%  Similarity=0.291  Sum_probs=40.7

Q ss_pred             CCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      .+++.||||++.|.|||+++|||+||+.||.+|    ...||.|++++..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence            367899999999999999999999999999873    5679999988753

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.74  E-value=1e-08  Score=80.25  Aligned_cols=51  Identities=20%  Similarity=0.559  Sum_probs=43.1

Q ss_pred             CCCCcccccccccccC---CceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           68 LPPEELRCPISLQLMY---DPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        68 ~~p~~f~CpI~~~~m~---dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      ...++..||||++.|.   ++++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA   63 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence            3456788999999884   5678999999999999999986 5679999988754

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.70  E-value=2.2e-07  Score=107.32  Aligned_cols=270  Identities=13%  Similarity=0.109  Sum_probs=184.5

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchh--hhh--ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARV--FTG--ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA  291 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~--~i~--~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa  291 (565)
                      +.++.++..+.+. ++..+..|+..|..+++..+....  .+.  -.+.++.|++++.+    .+..++..|+.+|.++.
T Consensus       128 ~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~----~~~~vR~~A~~aL~~~~  202 (852)
T 4fdd_A          128 DLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH----SSPKIRSHAVACVNQFI  202 (852)
T ss_dssp             THHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC----SSHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHH
Confidence            4678888888887 889999999999999865443211  110  12345555565554    68899999999998886


Q ss_pred             ccCchhhHHHHh--cCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCCCCHHHHHHH
Q 008437          292 VNNNRNKELMLA--AGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDA  365 (565)
Q Consensus       292 ~~~~~nk~~i~~--~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~~~~~A  365 (565)
                      ....   ..+..  .+.++.|..++..++  .+..|+.+|..++....  ..+..  .+.++.++.++.+. +..++..|
T Consensus       203 ~~~~---~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~--~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a  276 (852)
T 4fdd_A          203 ISRT---QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM--DRLLPHMHNIVEYMLQRTQDQ-DENVALEA  276 (852)
T ss_dssp             TTTC---HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH--HHHGGGHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred             hccc---HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHccCC-cHHHHHHH
Confidence            4322   11211  256788888887764  35668888887765321  11211  25778888888887 88999999


Q ss_pred             HHHHHHhccCCCChHHHHH--cCchHHHhhcc-----------CC-----------CChHHHHHHHHHHHHHhcCcccHH
Q 008437          366 LHALYNLSTIPSNIPNLLS--AGIISGLQSLA-----------VP-----------GDPMWTEKSLAVLLNLAASAAGKE  421 (565)
Q Consensus       366 l~aL~nLs~~~~nk~~iv~--~G~v~~Lv~Ll-----------~~-----------~~~~~~e~al~~L~nLa~~~~~r~  421 (565)
                      +..+..++.....+..+..  ...++.|+..+           .+           .+..++..+..+|..|+....  .
T Consensus       277 ~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~  354 (852)
T 4fdd_A          277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--D  354 (852)
T ss_dssp             HHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--G
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--H
Confidence            9999999876533332211  24566666644           22           122456778888888876432  1


Q ss_pred             HHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437          422 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       422 ~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      .++.  ..++.|.+++.+.+...++.|+.+|..|+....+.... .-.++++.|+.++.+.++.+|..|..+|..+.+.-
T Consensus       355 ~~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  431 (852)
T 4fdd_A          355 ELLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV  431 (852)
T ss_dssp             GGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred             HHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            2222  45677777788889999999999999999876542221 22467888999999999999999999999888753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.69  E-value=7.3e-08  Score=111.26  Aligned_cols=270  Identities=13%  Similarity=0.051  Sum_probs=179.7

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.++..+.+. +.++|..|++.|..++...++.-.... .++++.++.++.+    .+..++..|+.++..++. ..
T Consensus       215 ~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~----~~~~vr~~a~e~l~~l~~-~~  287 (852)
T 4fdd_A          215 SFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQD----QDENVALEACEFWLTLAE-QP  287 (852)
T ss_dssp             HHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTC----SSHHHHHHHHHHHHHHTT-ST
T ss_pred             HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccC----CcHHHHHHHHHHHHHHhc-ch
Confidence            4556677777776 899999999999999876543221111 2467777777765    678899999999999874 22


Q ss_pred             hhhHHHHh--cCchHHHHHHhc----------CC--------------cHHHHHHHHHHHhcCCCCCchhhccCCchHHH
Q 008437          296 RNKELMLA--AGVIPLLEKMIS----------NS--------------NSHGAATALYLNLSFLDDAKPIIGSSHAVPFL  349 (565)
Q Consensus       296 ~nk~~i~~--~G~i~~Lv~lL~----------s~--------------~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~L  349 (565)
                      ..+..+..  ...+|.|+..+.          ..              ..+..|+.+|..|+.... ...+  ...++.|
T Consensus       288 ~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~--~~l~~~l  364 (852)
T 4fdd_A          288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELL--PHILPLL  364 (852)
T ss_dssp             THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGH--HHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHH--HHHHHHH
Confidence            23332211  145677777662          11              124456667766664311 1111  2467888


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCccc--HHHHhcCC
Q 008437          350 VELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG--KEEMNSTP  427 (565)
Q Consensus       350 v~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~--r~~i~~~~  427 (565)
                      ..+|.+. +...++.|+.+|.+++........-.-.++++.|+.++.+.++.++..++.+|.+++..-..  .....  .
T Consensus       365 ~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~  441 (852)
T 4fdd_A          365 KELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--K  441 (852)
T ss_dssp             HHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--H
T ss_pred             HHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--H
Confidence            8888887 89999999999999986543211112256788888888888999999999999999863211  11111  1


Q ss_pred             CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          428 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      ..++.|++.|.+.++.+++.|+.+|.++|......... .-.++++.|+.++.....+....+..++..+..
T Consensus       442 ~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~-~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~  512 (852)
T 4fdd_A          442 PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD  512 (852)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh-HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            46778888888889999999999999999643321111 113567777777777666666666666666654

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.69  E-value=1.1e-08  Score=84.86  Aligned_cols=50  Identities=22%  Similarity=0.551  Sum_probs=44.1

Q ss_pred             CCCcccccccccccCC---ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           69 PPEELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~d---PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      ..++..||||++.|.+   +++++|||.|++.||.+|+.. +.+||.|++++..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            3567899999999988   888999999999999999985 6799999988754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.67  E-value=1.2e-08  Score=76.13  Aligned_cols=48  Identities=25%  Similarity=0.679  Sum_probs=42.2

Q ss_pred             CCcccccccccccCC---ceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           70 PEELRCPISLQLMYD---PVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        70 p~~f~CpI~~~~m~d---PV~~~-~g~ty~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      .++..||||++.|.+   +++++ |||.|++.||.+|+.. +.+||.|++++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence            356789999999999   88887 9999999999999976 678999998763

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.1e-08  Score=81.56  Aligned_cols=49  Identities=18%  Similarity=0.505  Sum_probs=43.5

Q ss_pred             CCcccccccccccCCc---eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           70 PEELRCPISLQLMYDP---VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        70 p~~f~CpI~~~~m~dP---V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      .++..||||++.|.++   ++++|||.|++.||.+|+.. +.+||.|++++..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence            4578899999999998   78899999999999999986 5789999988764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.65  E-value=9.8e-08  Score=107.80  Aligned_cols=191  Identities=16%  Similarity=0.097  Sum_probs=144.1

Q ss_pred             chHHHHHHhcCC--cHHHHHHHHHHHhcCCCCCchhhccCCchHHHH-HHhcCCCCHHHHHHHHHHHHHhccCC--CChH
Q 008437          306 VIPLLEKMISNS--NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLV-ELCKGKTEHQCKLDALHALYNLSTIP--SNIP  380 (565)
Q Consensus       306 ~i~~Lv~lL~s~--~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv-~lL~~~~~~~~~~~Al~aL~nLs~~~--~nk~  380 (565)
                      .|.+|+..|+++  +.+..|+++|.+|+.+...+..+...++|..++ .+|.+. +.+++..|+++|.||+.+.  +.+.
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHHH
Confidence            344566778876  457789999999998777888888888887765 466666 8999999999999999754  5788


Q ss_pred             HHHHcCchHHHhhccCCC--------------C-------hHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhh
Q 008437          381 NLLSAGIISGLQSLAVPG--------------D-------PMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLD  438 (565)
Q Consensus       381 ~iv~~G~v~~Lv~Ll~~~--------------~-------~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~  438 (565)
                      .+++.|++++|+.++...              .       ..+.+.++.+|++||... +....+... ++++.|+..|.
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~-~~l~~l~~~L~  192 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK-QTILRLLFRLI  192 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC-HHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc-ccHHHHHHHHH
Confidence            899999999999865320              0       134567889999999754 445566664 89999999885


Q ss_pred             c---CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHH---HHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          439 T---GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPA---LVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       439 ~---~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~---Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      .   ....++..|+.+|+.|+..+....+.+.+.|....   |+.+. ..+...+.-+..+|.++..
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~~  258 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVFT  258 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHhh
Confidence            4   34678999999999999999888888888775433   33333 3444456778888888653

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.65  E-value=5.7e-08  Score=109.74  Aligned_cols=155  Identities=12%  Similarity=0.030  Sum_probs=128.2

Q ss_pred             CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcC--cccH
Q 008437          344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAAS--AAGK  420 (565)
Q Consensus       344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~--~~~r  420 (565)
                      ..|.+|++.|++. ++..+..|+.+|.||+.+..++..++..|+|..++. ++.+.+..+++.|+++|.||+..  .+.+
T Consensus        34 ~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           34 DKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            3566788889998 899999999999999998889999999999998877 88889999999999999999974  4666


Q ss_pred             HHHhcCCCCHHHHHHHhhcCC---------------------HHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhh
Q 008437          421 EEMNSTPGLVSGLATVLDTGE---------------------LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS  479 (565)
Q Consensus       421 ~~i~~~~g~v~~Lv~lL~~~s---------------------~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~  479 (565)
                      ..++.. |+++.|..+|....                     ....++++.+|++||..+.+....+...|+++.|+.++
T Consensus       113 ~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          113 VHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            778886 89999999885311                     13456789999999998887777888899999998765


Q ss_pred             hcC---ChhHHHHHHHHHHHHHhh
Q 008437          480 VNG---STRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       480 ~~~---s~~~k~~A~~lL~~L~~~  500 (565)
                      .+.   ...++..|...|..|.+.
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~d  215 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSED  215 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhcc
Confidence            442   356888888888888754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.64  E-value=1.8e-08  Score=87.18  Aligned_cols=50  Identities=16%  Similarity=0.394  Sum_probs=42.6

Q ss_pred             CCcccccccccccCCce------------------ecCCCcccchHHHHHHHh----cCCCCCCCCCCCCCC
Q 008437           70 PEELRCPISLQLMYDPV------------------IIASGQTYERICIEKWLS----DGHSTCPKTQQKLPH  119 (565)
Q Consensus        70 p~~f~CpI~~~~m~dPV------------------~~~~g~ty~r~~I~~~~~----~~~~~cP~t~~~l~~  119 (565)
                      +.+..||||++.|.+|+                  +++|||.|++.||.+|+.    ..+.+||.|+..+..
T Consensus        23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            34568999999999886                  789999999999999996    346789999988753

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.59  E-value=7e-07  Score=94.40  Aligned_cols=278  Identities=14%  Similarity=0.083  Sum_probs=179.8

Q ss_pred             hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc
Q 008437          216 ERYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN  293 (565)
Q Consensus       216 e~i~~ll~~L~s~~-~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~  293 (565)
                      +.++.++..+.+.. ++..+..|+..|..+++.. .+.-... ...+++.++.+|.+.  ..+..++..|+.+|.++...
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~~  204 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEF  204 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHH
Confidence            56788888887743 6889999999999998643 2111111 134677778888662  11688999999999986421


Q ss_pred             Cchhh-HHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--CchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437          294 NNRNK-ELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA  368 (565)
Q Consensus       294 ~~~nk-~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a  368 (565)
                      -..+- ......-.++.|...+.+++.  +..++.+|..+.....  .+..+. .+.++.++..+++. +..++..|+..
T Consensus       205 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~-~~~v~~~a~~~  282 (462)
T 1ibr_B          205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD-IDEVALQGIEF  282 (462)
T ss_dssp             THHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCS-SHHHHHHHHHH
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHH
Confidence            11110 001111135566666655543  4557777776654321  111121 16778888888877 88999999999


Q ss_pred             HHHhccCC------------------CChHHHHH---cCchHHHhhccCC-------CChHHHHHHHHHHHHHhcCcccH
Q 008437          369 LYNLSTIP------------------SNIPNLLS---AGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAAGK  420 (565)
Q Consensus       369 L~nLs~~~------------------~nk~~iv~---~G~v~~Lv~Ll~~-------~~~~~~e~al~~L~nLa~~~~~r  420 (565)
                      +..++...                  .....+++   ..++|.|++.+.+       .+..++..|+.+|..|+..-.  
T Consensus       283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--  360 (462)
T 1ibr_B          283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--  360 (462)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--
Confidence            98887532                  01111121   3356667664422       234677888889988887432  


Q ss_pred             HHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          421 EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       421 ~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      ..+..  .+++.+...|.+.+...++.|+.+|..++.... +.... .-..++|.|+.++.+..+++|..|..+|..+.+
T Consensus       361 ~~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          361 DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            23332  466777778888889999999999999997442 11111 115789999999999999999999999999987


Q ss_pred             hccc
Q 008437          500 QRQR  503 (565)
Q Consensus       500 ~r~~  503 (565)
                      .-..
T Consensus       438 ~~~~  441 (462)
T 1ibr_B          438 LLPE  441 (462)
T ss_dssp             HGGG
T ss_pred             hccc
Confidence            7544

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.58  E-value=1.1e-08  Score=81.52  Aligned_cols=45  Identities=22%  Similarity=0.388  Sum_probs=40.8

Q ss_pred             CCcccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           70 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        70 p~~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      .+++.||||++.+.|||+++|||+ ||+.||.+|     .+||.|++++..
T Consensus        22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            357899999999999999999999 999999999     679999988753

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.55  E-value=4.7e-07  Score=98.89  Aligned_cols=259  Identities=11%  Similarity=0.002  Sum_probs=180.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN  297 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n  297 (565)
                      ++.+...+.+. ++.+|..++..|..++..-..   .......++.|..+|.+    .+..++..++.+|..+...-.  
T Consensus       326 ~p~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~--  395 (588)
T 1b3u_A          326 LPCIKELVSDA-NQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKD----ECPEVRLNIISNLDCVNEVIG--  395 (588)
T ss_dssp             HHHHHHHHTCS-CHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTC----SCHHHHHHHHTTCHHHHHHSC--
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHHHHhcC--
Confidence            34455566665 889999998888888643211   11123467888888876    678899999888887753211  


Q ss_pred             hHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437          298 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI  375 (565)
Q Consensus       298 k~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~  375 (565)
                      .. ......+|.|..++...+.  +..++.++..++..-..  .......++.++.+|.+. +..+++.|+.+|..++..
T Consensus       396 ~~-~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~  471 (588)
T 1b3u_A          396 IR-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEK  471 (588)
T ss_dssp             HH-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH
Confidence            11 1223568888888876643  45566677666531100  011234678899999888 889999999999999754


Q ss_pred             CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008437          376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL  455 (565)
Q Consensus       376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~L  455 (565)
                      -+..  .....++|.|+.++.+.+..++..++.+|..++..- +...+..  ..++.|+.++.+.++.++..++.+|..+
T Consensus       472 ~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~-~~~~~~~--~~~~~l~~~l~d~~~~Vr~~a~~~l~~l  546 (588)
T 1b3u_A          472 FGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-GQDITTK--HMLPTVLRMAGDPVANVRFNVAKSLQKI  546 (588)
T ss_dssp             HCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH-HHHHHHH--HTHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             hCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc-CHHHHHH--HHHHHHHhhCCCCCchHHHHHHHHHHHH
Confidence            3222  223457888888877788899999999999988632 2223333  5889999999988999999999999999


Q ss_pred             hcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          456 CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       456 c~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      +..-..   ......++|.|..+..+.+..+|..|..+|..+.
T Consensus       547 ~~~~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          547 GPILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             GGGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHhch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            864332   1233567788888888899999999999998765

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.54  E-value=2.4e-08  Score=103.43  Aligned_cols=49  Identities=18%  Similarity=0.297  Sum_probs=44.6

Q ss_pred             cccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 008437           72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL  120 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~  120 (565)
                      ...||||++.+.|||+++|||+||+.||..|+..+..+||.|++++...
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            4789999999999999999999999999999986678999999987653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.52  E-value=1.3e-06  Score=95.30  Aligned_cols=262  Identities=16%  Similarity=0.112  Sum_probs=171.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN  297 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n  297 (565)
                      ++.+...+.+. ++.+|..|+..|..++.....   .......++.|..++.+    ++..++..|+.+|..++...+. 
T Consensus       166 ~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d----~~~~vr~~a~~~l~~l~~~~~~-  236 (588)
T 1b3u_A          166 RQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASD----EQDSVRLLAVEACVNIAQLLPQ-  236 (588)
T ss_dssp             HHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTC----SCHHHHTTHHHHHHHHHHHSCH-
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHhCCH-
Confidence            34444555655 899999999999999854321   12235667888888876    6788999999999988743221 


Q ss_pred             hHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437          298 KELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI  375 (565)
Q Consensus       298 k~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~  375 (565)
                        ......++|.+..++...+  .+..|+.+|..+...-..  .......++.++.++.+. ++.++..|+.+|..++..
T Consensus       237 --~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~  311 (588)
T 1b3u_A          237 --EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             --HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHH
Confidence              1223357888888887664  356677777766532110  111235789999999988 899999999999999854


Q ss_pred             CC--ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437          376 PS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF  453 (565)
Q Consensus       376 ~~--nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~  453 (565)
                      -.  .+....-..+++.+..++.+.+..++..++.+|..++..- +......  ..++.+..++.+.++.++..|+.+|.
T Consensus       312 ~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~-~~~~~~~--~l~p~l~~~l~d~~~~Vr~~a~~~l~  388 (588)
T 1b3u_A          312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL-GKDNTIE--HLLPLFLAQLKDECPEVRLNIISNLD  388 (588)
T ss_dssp             SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH-CHHHHHH--HTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred             hChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-hHhHHHH--HHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            32  2222333467788888888888888898888888887532 1222222  46778888888778888888888777


Q ss_pred             HhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          454 LLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       454 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      .++..-...   .....++|.|..+..+.+.++|..+..+|..+..
T Consensus       389 ~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~  431 (588)
T 1b3u_A          389 CVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             HHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            766532110   1112345555555555555666666655555543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.51  E-value=3.2e-06  Score=93.73  Aligned_cols=262  Identities=12%  Similarity=0.057  Sum_probs=169.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .++.+...|.+. ++.+|.+|+.+|..+...+++   .+...++++.|..+|.+    .++.++..|+.+|..++..+++
T Consensus       122 l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d----~d~~V~~~A~~aL~~i~~~~~~  193 (591)
T 2vgl_B          122 LCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIAD----SNPMVVANAVAALSEISESHPN  193 (591)
T ss_dssp             HHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSC----SCHHHHHHHHHHHHHHTTSCCS
T ss_pred             HHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCC----CChhHHHHHHHHHHHHHhhCCC
Confidence            345577778776 999999999999999876654   23335788999999976    7899999999999999864432


Q ss_pred             hhHHHHhcCchHHHHHHhcCCcHH--HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437          297 NKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST  374 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~  374 (565)
                      ....-...+.+..|+..|...+..  ...+.+|..+...++  ..  ....++.|..+|++. +..++..|+++|.++..
T Consensus       194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~~--~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~  268 (591)
T 2vgl_B          194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD--RE--AQSICERVTPRLSHA-NSAVVLSAVKVLMKFLE  268 (591)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--HH--HHHHHHHHTTCSCSS-TTHHHHHHHHHHHHSCC
T ss_pred             ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--HH--HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhh
Confidence            211111223466667666554433  334444444432211  11  135678888888887 88999999999999874


Q ss_pred             ----CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC-cc------------------c-HHHH-----hc
Q 008437          375 ----IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AA------------------G-KEEM-----NS  425 (565)
Q Consensus       375 ----~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~-~~------------------~-r~~i-----~~  425 (565)
                          +++.... +-..+++.|+.++. .++.++..++..|..++.. ++                  - +.++     +.
T Consensus       269 ~~~~~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~  346 (591)
T 2vgl_B          269 LLPKDSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLA  346 (591)
T ss_dssp             SCCBTTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTC
T ss_pred             ccCCCHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHC
Confidence                2222222 22345566666553 5677777777777776641 00                  0 1111     11


Q ss_pred             CCC----CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          426 TPG----LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       426 ~~g----~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      +..    .+..|.+++...+...+..++.++..+|..-+...     ...++.|+.++....+.++..+...|+.+-
T Consensus       347 ~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii  418 (591)
T 2vgl_B          347 SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIF  418 (591)
T ss_dssp             CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            112    23445555666789999999999999998664322     345788888888777777777666666643

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.49  E-value=2.2e-08  Score=88.60  Aligned_cols=57  Identities=25%  Similarity=0.530  Sum_probs=50.7

Q ss_pred             CCCcccccccccccCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 008437           69 PPEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY  126 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~  126 (565)
                      .++.+.||||++.+.+|       |+++|||+|+..||.+|+.. ..+||.|+.++...++.|++
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence            35789999999999998       89999999999999999986 57999999999888877753

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.45  E-value=6.9e-06  Score=90.98  Aligned_cols=258  Identities=15%  Similarity=0.122  Sum_probs=173.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437          219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK  298 (565)
Q Consensus       219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk  298 (565)
                      ..+.+.|.+. ++.+|..|+..|..+.  .++..     ...++.+..+|.+    .++.++..|+.+|.++...+++  
T Consensus        89 n~l~kdL~~~-n~~ir~~AL~~L~~i~--~~~~~-----~~l~~~l~~~L~d----~~~~VRk~A~~al~~i~~~~p~--  154 (591)
T 2vgl_B           89 NSFVKDCEDP-NPLIRALAVRTMGCIR--VDKIT-----EYLCEPLRKCLKD----EDPYVRKTAAVCVAKLHDINAQ--  154 (591)
T ss_dssp             HHHGGGSSSS-SHHHHHHHHHHHHTCC--SGGGH-----HHHHHHHHHHSSC----SCHHHHHHHHHHHHHHHHSSCC--
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHcCC--hHHHH-----HHHHHHHHHHcCC----CChHHHHHHHHHHHHHHhhChh--
Confidence            4455556665 8999988888777764  22222     2235678888876    7899999999999999754332  


Q ss_pred             HHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhh-ccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437          299 ELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPII-GSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI  375 (565)
Q Consensus       299 ~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I-~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~  375 (565)
                       .+.+.+.++.|..+|...+.  +.+|+.+|..+...+.....+ ...+.+..|+..|.+. ++-.+...+.+|..++..
T Consensus       155 -~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~  232 (591)
T 2vgl_B          155 -MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPK  232 (591)
T ss_dssp             -CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCC
T ss_pred             -hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCC
Confidence             33345789999999987653  566888998887654321111 1135577888888777 788888888888888743


Q ss_pred             CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc----CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHH
Q 008437          376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC  451 (565)
Q Consensus       376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~----~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~  451 (565)
                      ++.  .  ...+++.+..++.+.+..+...|+.++..+..    .++....+..  ..++.|+.++. .++.++..|+.+
T Consensus       233 ~~~--~--~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~~-~d~~vr~~aL~~  305 (591)
T 2vgl_B          233 DDR--E--AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK--KLAPPLVTLLS-GEPEVQYVALRN  305 (591)
T ss_dssp             SHH--H--HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH--HTHHHHHHHTT-SCHHHHHHHHHH
T ss_pred             ChH--H--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH--HHHHHHHHHhc-CCccHHHHHHHH
Confidence            321  1  23467788888888889999999999999874    3444444443  45667776654 678888888888


Q ss_pred             HHHhhcCC------------------hHHHHHHH-------hC----CcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          452 LFLLCNGN------------------EKCCQMVL-------QE----GVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       452 L~~Lc~~~------------------~~~~~~v~-------~~----G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      |..+....                  ...+...+       .+    .+++.|...+.+.+...|..|...|..+..
T Consensus       306 l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~  382 (591)
T 2vgl_B          306 INLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAI  382 (591)
T ss_dssp             HHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            87776311                  11111111       12    234455566677888888888888877764

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=7.3e-08  Score=76.89  Aligned_cols=45  Identities=22%  Similarity=0.392  Sum_probs=39.7

Q ss_pred             CCcccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           70 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        70 p~~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      .+++.||||++.+.|||+++|||+ ||+.|+.+     ...||.|++++..
T Consensus        23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred             CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence            457889999999999999999999 99999964     3679999998765

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.39  E-value=5.6e-08  Score=81.10  Aligned_cols=66  Identities=11%  Similarity=0.267  Sum_probs=48.8

Q ss_pred             CcccccccccccCCceec---CCCcccchHHHHHHHhc----C---CCCCCC--CCCC--CCCCCCcccHHHHHHHHHHH
Q 008437           71 EELRCPISLQLMYDPVII---ASGQTYERICIEKWLSD----G---HSTCPK--TQQK--LPHLCLTPNYCVKGLIASWC  136 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~---~~g~ty~r~~I~~~~~~----~---~~~cP~--t~~~--l~~~~l~pn~~l~~~i~~~~  136 (565)
                      +.|.||||++.+.+|+++   +|||+||+.||.+|+..    |   ...||.  |+..  +.+.. +.+....++++.|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~-i~~ll~~~~~~ky~   82 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE-IECMVAAEIMQRYK   82 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH-HHHHSCHHHHHHHH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH-HHHHCCHHHHHHHH
Confidence            578999999999999875   69999999999999863    3   247999  9887  54322 22333355666665


Q ss_pred             H
Q 008437          137 E  137 (565)
Q Consensus       137 ~  137 (565)
                      .
T Consensus        83 ~   83 (94)
T 1wim_A           83 K   83 (94)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=3.2e-07  Score=74.29  Aligned_cols=48  Identities=23%  Similarity=0.506  Sum_probs=40.1

Q ss_pred             CcccccccccccCC--------------ceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYD--------------PVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        71 ~~f~CpI~~~~m~d--------------PV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      ++-.|+||++-|.+              ++++ +|||.|.+.||.+|+.. +.+||.|++++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence            45669999999988              4555 59999999999999986 5799999988753

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.22  E-value=2.9e-05  Score=86.54  Aligned_cols=249  Identities=14%  Similarity=0.110  Sum_probs=154.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .++.+...|.+. ++.+|.+|+..+..+...+++...     ++++.|..+|.+    .|+.++..|+.+|..++..+++
T Consensus       143 l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D----~d~~V~~~Al~~L~~i~~~~~~  212 (618)
T 1w63_A          143 LAGEVEKLLKTS-NSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNE----KNHGVLHTSVVLLTEMCERSPD  212 (618)
T ss_dssp             HHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTC----CCHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCC----CCHhHHHHHHHHHHHHHHhChH
Confidence            356677888887 999999999999999877664322     566677777765    7899999999999999743222


Q ss_pred             hhHHHHhcCchHHHHHHhcC---------------CcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC---
Q 008437          297 NKELMLAAGVIPLLEKMISN---------------SNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK---  356 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s---------------~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~---  356 (565)
                      ....+  ...++.|+.+|..               .+.  +...+.+|..+...+..   . ....++.|..++...   
T Consensus       213 ~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~---~-~~~~~~~L~~l~~~~~~~  286 (618)
T 1w63_A          213 MLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD---S-SEAMNDILAQVATNTETS  286 (618)
T ss_dssp             HHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH---H-HHTTHHHHHHHHHTSCCS
T ss_pred             HHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH---H-HHHHHHHHHHHHhccccc
Confidence            11122  2578888887753               122  34456666666543211   0 123455566655311   


Q ss_pred             --CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHH
Q 008437          357 --TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA  434 (565)
Q Consensus       357 --~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv  434 (565)
                        .+..+.-.|+.++.++...+    .+.. .++..|..++.+.++.++..|+.+|..++...   ..++.  .....++
T Consensus       287 ~~~~~aV~~ea~~~i~~l~~~~----~l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~--~~~~~i~  356 (618)
T 1w63_A          287 KNVGNAILYETVLTIMDIKSES----GLRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ--RHRSTIV  356 (618)
T ss_dssp             STHHHHHHHHHHHHHHHSCCCH----HHHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG--GGHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCH----HHHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH--HHHHHHH
Confidence              13467777888887775421    2222 46677777776677778888888888777632   22232  2456677


Q ss_pred             HHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          435 TVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       435 ~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      ..+.+.+..++..|+.+|..++....  ...     ++..|+..+.+.+...|+.+...|..+.
T Consensus       357 ~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la  413 (618)
T 1w63_A          357 DCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAA  413 (618)
T ss_dssp             HGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            77777777788888888888776542  111     1244444444555555655555555554

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.21  E-value=7.4e-07  Score=68.72  Aligned_cols=47  Identities=19%  Similarity=0.292  Sum_probs=42.4

Q ss_pred             CcccccccccccCCceec--CCCcc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYDPVII--ASGQT-YERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~--~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      ++..|+||++-+.|+|++  +|||. ||..|+.+|+.. +..||.|++++.
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence            567899999999999988  99999 899999999975 578999999875

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.15  E-value=1.1e-06  Score=67.48  Aligned_cols=47  Identities=17%  Similarity=0.284  Sum_probs=42.2

Q ss_pred             CcccccccccccCCceec--CCCcc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYDPVII--ASGQT-YERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~--~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      .+..|+||++-++|+|++  +|||. ||+.|+.+|+.. ...||.|++++.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence            456899999999999988  99998 999999999976 478999999875

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.11  E-value=1.7e-06  Score=73.63  Aligned_cols=46  Identities=20%  Similarity=0.469  Sum_probs=39.6

Q ss_pred             cccccccccccCCc------------------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           72 ELRCPISLQLMYDP------------------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        72 ~f~CpI~~~~m~dP------------------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      +-.|+||++-|.+|                  +.++|||.|.+.||.+|+.. +.+||.|++++.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            45699999999987                  34789999999999999986 789999998753

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.11  E-value=0.00012  Score=83.89  Aligned_cols=276  Identities=13%  Similarity=0.072  Sum_probs=175.5

Q ss_pred             hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCccchhhhhc--cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhc
Q 008437          216 ERYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV  292 (565)
Q Consensus       216 e~i~~ll~~L~s~~-~~~~q~~Al~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~  292 (565)
                      +.++.++..+.+.. ++.+|..++..|..++..-.  ...+..  ...++.|+..|.+.  ..+..++..|+.+|.++..
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~  203 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLE  203 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHH
Confidence            45677888887643 67889999999999986421  011111  34566666777652  1257899999999998763


Q ss_pred             cCchh-hHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--CchhhccCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437          293 NNNRN-KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGKTEHQCKLDALH  367 (565)
Q Consensus       293 ~~~~n-k~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~  367 (565)
                      .-..+ .........++.+...+...+.  +..++.+|..+.....  ....+ ....++.++..+.+. +..++..|+.
T Consensus       204 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~v~~~al~  281 (876)
T 1qgr_A          204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSD-IDEVALQGIE  281 (876)
T ss_dssp             GCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcCC-chHHHHHHHH
Confidence            21111 0011111256677777765543  4557777766653211  11111 126788888888777 8889999999


Q ss_pred             HHHHhccCC-------------------CChHHH--HHcCchHHHhhccC-------CCChHHHHHHHHHHHHHhcCccc
Q 008437          368 ALYNLSTIP-------------------SNIPNL--LSAGIISGLQSLAV-------PGDPMWTEKSLAVLLNLAASAAG  419 (565)
Q Consensus       368 aL~nLs~~~-------------------~nk~~i--v~~G~v~~Lv~Ll~-------~~~~~~~e~al~~L~nLa~~~~~  419 (565)
                      .+.+++...                   .....+  .-..+++.+++++.       +.+..++..|+.+|..|+..-. 
T Consensus       282 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-  360 (876)
T 1qgr_A          282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-  360 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-
T ss_pred             HHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-
Confidence            998887431                   000111  11345677777543       2345677788888888876332 


Q ss_pred             HHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          420 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       420 r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                       ..++.  ..++.+...+.+.+...++.|+.+|..++.... +..... -..++|.|+..+.+..+.+|..|..+|..+.
T Consensus       361 -~~~~~--~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~  436 (876)
T 1qgr_A          361 -DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRIC  436 (876)
T ss_dssp             -GGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             -HhhHH--HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence             12222  355666677777889999999999999997543 222222 2457888998888899999999999999988


Q ss_pred             hhcc
Q 008437          499 EQRQ  502 (565)
Q Consensus       499 ~~r~  502 (565)
                      +.-.
T Consensus       437 ~~~~  440 (876)
T 1qgr_A          437 ELLP  440 (876)
T ss_dssp             HHCG
T ss_pred             HhCc
Confidence            7643

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.10  E-value=4e-05  Score=73.40  Aligned_cols=211  Identities=14%  Similarity=0.113  Sum_probs=149.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.+..++..|... |..++.+|+..|..+.+.-+..-....-...++.++.++.+    .|..+...|+.+|..|-.+.+
T Consensus        33 ~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~----~dEkval~A~r~L~~LLe~vp  107 (265)
T 3b2a_A           33 RALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ----ENEKVTIKALRALGYLVKDVP  107 (265)
T ss_dssp             HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS----TTHHHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc----cchhHHHHHHHHHHHHHcCCC
Confidence            3556777888776 99999999999999998754433333335568999999987    789999999999998865444


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS  373 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs  373 (565)
                      -....+..  ++..|..++.+++.  ++.|+-.+..|......      .+++..|..++.+. +.+++..++.+|.|++
T Consensus       108 L~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia  178 (265)
T 3b2a_A          108 MGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSP-DLYTKVAGFCLFLNML  178 (265)
T ss_dssp             BCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHG
T ss_pred             CCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCC-ChhHHHHHHHHHHHhh
Confidence            33444433  46778888887754  57788888877333222      35668889999777 9999999999999999


Q ss_pred             cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhh--------cCCHHHH
Q 008437          374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD--------TGELIEQ  445 (565)
Q Consensus       374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~--------~~s~~~~  445 (565)
                      ...++...+  .+++..+-.++++.++.+++.|+.+|..+...+--       ...++.+..++.        .+.|..+
T Consensus       179 ~~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~-------~~~~~~~~~~~~~v~~l~~~~~~~~~~  249 (265)
T 3b2a_A          179 NSSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL-------ENVKIELLKISRIVDGLVYREGAPIIR  249 (265)
T ss_dssp             GGCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC-------SCCHHHHHHHHHHHHHGGGCSSCHHHH
T ss_pred             cccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc-------HhHHHHHHHHHHHHHHHHHhcCChhHH
Confidence            755433322  23444556677888999999999999999886422       244555544442        3566666


Q ss_pred             HHHH
Q 008437          446 EQAV  449 (565)
Q Consensus       446 e~Av  449 (565)
                      +.|-
T Consensus       250 ~ka~  253 (265)
T 3b2a_A          250 LKAK  253 (265)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.10  E-value=6.2e-07  Score=92.31  Aligned_cols=45  Identities=20%  Similarity=0.380  Sum_probs=40.8

Q ss_pred             CCcccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           70 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        70 p~~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      .+++.||||++.+.|||+++|||+ ||+.||.+|     ..||.|+.++..
T Consensus       293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            457899999999999999999999 999999988     679999988753

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.09  E-value=5e-06  Score=64.82  Aligned_cols=47  Identities=15%  Similarity=0.263  Sum_probs=41.0

Q ss_pred             CCCCcccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           68 LPPEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        68 ~~p~~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      .-.++..|+||++-..|+|+++|||. ||..|++.     ...||.|++++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            33467899999999999999999999 99999983     4689999998764

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.08  E-value=1.7e-05  Score=95.07  Aligned_cols=268  Identities=12%  Similarity=0.106  Sum_probs=177.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .+..++..+.+. +.++|..|...|.+..+.+...-..-.....++.|++.|.+    .+..+|..|+.+|.+++..-..
T Consensus         7 ~l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d----~~~~vR~~A~~~L~~l~~~~~~   81 (1230)
T 1u6g_C            7 HISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED----KNGEVQNLAVKCLGPLVSKVKE   81 (1230)
T ss_dssp             HHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhCCH
Confidence            467888999887 99999999999998775432110001113457778888865    6899999999999999743222


Q ss_pred             hhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCc----hhh--ccCCchHHHHHHhcC-CCCHHHHHHHHH
Q 008437          297 NKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAK----PII--GSSHAVPFLVELCKG-KTEHQCKLDALH  367 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k----~~I--~~~g~i~~Lv~lL~~-~~~~~~~~~Al~  367 (565)
                         ... ..+++.|+..|.+++  .+..|+.+|..++..-...    ...  .-...+|.|+..+.+ + +...+..|+.
T Consensus        82 ---~~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~al~  156 (1230)
T 1u6g_C           82 ---YQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE-DVSVQLEALD  156 (1230)
T ss_dssp             ---HHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHH
T ss_pred             ---HHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC-chHHHHHHHH
Confidence               111 235677777776553  3445555665554321110    011  113578999999984 6 8899999999


Q ss_pred             HHHHhccCCC--ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcC-CHHH
Q 008437          368 ALYNLSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG-ELIE  444 (565)
Q Consensus       368 aL~nLs~~~~--nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~-s~~~  444 (565)
                      +|..++....  ....  -..+++.|+..+.+.+..+++.|+.+|..++.....  .+.  ...++.|+..|... +...
T Consensus       157 ~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~  230 (1230)
T 1u6g_C          157 IMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMST  230 (1230)
T ss_dssp             HHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCS
T ss_pred             HHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhH
Confidence            9999984211  1111  134667788877778889999999999999975432  222  25688888888654 2456


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437          445 QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       445 ~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      +..++.+|..++..-+..... .-..+++.++..+.+.++.+|+.|..+|..+...-
T Consensus       231 r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~  286 (1230)
T 1u6g_C          231 TRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC  286 (1230)
T ss_dssp             CTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence            677888888877643321000 11468888888888888999999999988877643

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.07  E-value=6.8e-07  Score=72.00  Aligned_cols=45  Identities=18%  Similarity=0.437  Sum_probs=40.0

Q ss_pred             CCcccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           70 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        70 p~~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      .++..|+||++.+.|||+++|||. ||+.|+.+|.     .||.|++++..
T Consensus        16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~   61 (79)
T 2yho_A           16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH   61 (79)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred             CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence            456789999999999999999999 9999999773     79999998764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.05  E-value=3.6e-05  Score=88.22  Aligned_cols=275  Identities=8%  Similarity=0.033  Sum_probs=171.3

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCccc-hhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          217 RYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEA-RVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       217 ~i~~ll~~L~s~~-~~~~q~~Al~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      .+..++..|.... +.++|..|++.|..++..-... ........+++.+...+.+    .+..++..++.+|..+....
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~----~~~~vr~~a~~~l~~l~~~~  248 (876)
T 1qgr_A          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLY  248 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHh
Confidence            3455666676542 5889999999999987532111 0001111245666666544    67889999999999887533


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC-------------------CCchhhc--cCCchHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-------------------DAKPIIG--SSHAVPFLVE  351 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~-------------------~~k~~I~--~~g~i~~Lv~  351 (565)
                      ...-...+....++.++..+...+.  +..|+.++..++...                   .....+.  -...++.++.
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~  328 (876)
T 1qgr_A          249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ  328 (876)
T ss_dssp             GGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHH
Confidence            3221222333678888877765532  444555555554210                   0001110  0245677888


Q ss_pred             HhcCC------CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc--cHHHH
Q 008437          352 LCKGK------TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA--GKEEM  423 (565)
Q Consensus       352 lL~~~------~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~--~r~~i  423 (565)
                      +|...      .+...++.|+.+|..|+..-..  .++ ..+++.+...+.+.+..+++.++.+|..++....  .....
T Consensus       329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~  405 (876)
T 1qgr_A          329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL  405 (876)
T ss_dssp             HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred             HhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            87531      1456888899998888753221  112 2355556666677888999999999999987532  22233


Q ss_pred             hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHH-HHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437          424 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCC-QMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       424 ~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~-~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      ..  ..++.|+..|.+.++.++..|+.+|.+++..-.... ..-.-..+++.|+..+.+. +++++.|..+|..+...-
T Consensus       406 ~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~  481 (876)
T 1qgr_A          406 VI--QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAA  481 (876)
T ss_dssp             HH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence            32  578889999988899999999999999997533210 0000124567777766664 889999999999987653

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.03  E-value=7.7e-05  Score=85.28  Aligned_cols=270  Identities=11%  Similarity=0.041  Sum_probs=168.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch-
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR-  296 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~-  296 (565)
                      +..+...+.+. ++++|..|++.|..++...++.-.......+++.++..+.+    .+..++..|+.++..++..... 
T Consensus       226 l~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~vr~~a~~~l~~l~~~~~~~  300 (861)
T 2bpt_A          226 MQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS----PNDKVASMTVEFWSTICEEEIDI  300 (861)
T ss_dssp             HHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHHHHhh
Confidence            34444555555 89999999999999986544321111111455666666654    6788999999988888632100 


Q ss_pred             -------------hhHHHHh--cCchHHHHHHhcCC---------cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHH
Q 008437          297 -------------NKELMLA--AGVIPLLEKMISNS---------NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVEL  352 (565)
Q Consensus       297 -------------nk~~i~~--~G~i~~Lv~lL~s~---------~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~l  352 (565)
                                   .+..+..  ..+++.|+..|...         ..+..|..+|..++..-. ...+  ...++.+..+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~--~~l~~~l~~~  377 (861)
T 2bpt_A          301 AYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHIL--EPVLEFVEQN  377 (861)
T ss_dssp             HHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGH--HHHHHHHHHH
T ss_pred             hhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHH--HHHHHHHHHH
Confidence                         0001111  34678888887642         234557777777764211 1111  2355677777


Q ss_pred             hcCCCCHHHHHHHHHHHHHhccCCCChHHHHH--cCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccH---HHHhcCC
Q 008437          353 CKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGK---EEMNSTP  427 (565)
Q Consensus       353 L~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~--~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r---~~i~~~~  427 (565)
                      |.+. +...++.|+.+|..++.... ...+..  ..+++.|+..+.+.++.++..++.+|..++..-...   .....  
T Consensus       378 l~~~-~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--  453 (861)
T 2bpt_A          378 ITAD-NWRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP--  453 (861)
T ss_dssp             TTCS-SHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH--
T ss_pred             cCCC-ChhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH--
Confidence            7777 88999999999999985432 111111  257888888777888999999999999988632110   11111  


Q ss_pred             CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC-----hHHHHHHHhCCcHHHHHHhhhcC--ChhHHHHHHHHHHHHHhh
Q 008437          428 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGN-----EKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-----~~~~~~v~~~G~v~~Lv~L~~~~--s~~~k~~A~~lL~~L~~~  500 (565)
                      ..++.|++.|... +.++..|+.+|.+++..-     ......+  ..+++.|+.++.+.  ++.+|..|..+|..+...
T Consensus       454 ~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~  530 (861)
T 2bpt_A          454 GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEY  530 (861)
T ss_dssp             HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence            3567777777654 889999999999887531     1111111  24567777777643  378898898888887765


Q ss_pred             cc
Q 008437          501 RQ  502 (565)
Q Consensus       501 r~  502 (565)
                      ..
T Consensus       531 ~~  532 (861)
T 2bpt_A          531 AT  532 (861)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.96  E-value=7.5e-05  Score=75.57  Aligned_cols=151  Identities=15%  Similarity=0.089  Sum_probs=126.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHH-hccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhc
Q 008437          347 PFLVELCKGKTEHQCKLDALHALYN-LSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS  425 (565)
Q Consensus       347 ~~Lv~lL~~~~~~~~~~~Al~aL~n-Ls~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~  425 (565)
                      ..+++-|.++ +.+.++.++.-|.. ++.+..-...++..|++..|+.+..+++...+..++.+|.+|.....|...++.
T Consensus       121 ~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          121 NAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            3444555566 67788889988888 666778899999999999999988888999999999999999999999999998


Q ss_pred             CCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhC--------C--cHHHHHHhhh---cCChhHHHHHHH
Q 008437          426 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE--------G--VIPALVSISV---NGSTRGRDKAQR  492 (565)
Q Consensus       426 ~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~--------G--~v~~Lv~L~~---~~s~~~k~~A~~  492 (565)
                      ++..|..|+.++.+....+...|+.+|..+|..++.....+.++        |  -+..|+.++.   +++..++.+|..
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            88999999999998889999999999999998886555544443        1  2667888886   689999999999


Q ss_pred             HHHHHH
Q 008437          493 LLMLFR  498 (565)
Q Consensus       493 lL~~L~  498 (565)
                      |+..+-
T Consensus       280 LIN~lL  285 (339)
T 3dad_A          280 LINKTL  285 (339)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888743

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.94  E-value=1.2e-05  Score=64.68  Aligned_cols=50  Identities=14%  Similarity=0.339  Sum_probs=42.0

Q ss_pred             CCccccccccccc--CCceecCCC-----cccchHHHHHHHhcC-CCCCCCCCCCCCC
Q 008437           70 PEELRCPISLQLM--YDPVIIASG-----QTYERICIEKWLSDG-HSTCPKTQQKLPH  119 (565)
Q Consensus        70 p~~f~CpI~~~~m--~dPV~~~~g-----~ty~r~~I~~~~~~~-~~~cP~t~~~l~~  119 (565)
                      .++-.|+||++-+  .+|++++|+     |.|-+.||++|+... ..+||+|+.++..
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            3567899999766  579999996     999999999999863 4789999998764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.94  E-value=0.0003  Score=80.37  Aligned_cols=277  Identities=10%  Similarity=0.068  Sum_probs=172.5

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCc-cchhhhh--ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTG--ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV  292 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~-~~r~~i~--~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~  292 (565)
                      +.++.++..+.+..++..+..|+..|..+++.-. +.+ .+.  ....++.|+..|.+.  ..+..++..|+.+|.++..
T Consensus       134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~~~ll~~l~~~l~~~--~~~~~vr~~al~~l~~~~~  210 (861)
T 2bpt_A          134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ-ALVSSSNNILIAIVQGAQST--ETSKAVRLAALNALADSLI  210 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS-TTGGGHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh-HHHHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHH
Confidence            4567777877664378889999999999986432 211 011  123455556666541  1278899999999988642


Q ss_pred             cCchh-hHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--CchhhccCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437          293 NNNRN-KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGKTEHQCKLDALH  367 (565)
Q Consensus       293 ~~~~n-k~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~  367 (565)
                      .-..+ .........++.|...+.+++.  +..++.+|..+.....  ....+. ...++.++..+.+. +..++..|+.
T Consensus       211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~-~~~vr~~a~~  288 (861)
T 2bpt_A          211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSP-NDKVASMTVE  288 (861)
T ss_dssp             GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred             HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHH
Confidence            11111 0000112246666777766543  4556666666653211  111111 15666777777777 8899999999


Q ss_pred             HHHHhccCCC-----------------C-hHHHHHcCchHHHhhccCC-------CChHHHHHHHHHHHHHhcCcccHHH
Q 008437          368 ALYNLSTIPS-----------------N-IPNLLSAGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAAGKEE  422 (565)
Q Consensus       368 aL~nLs~~~~-----------------n-k~~iv~~G~v~~Lv~Ll~~-------~~~~~~e~al~~L~nLa~~~~~r~~  422 (565)
                      ++..++....                 + ....+ ..+++.|+..+..       .+..++..+..+|..|+..-.  ..
T Consensus       289 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~  365 (861)
T 2bpt_A          289 FWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NH  365 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GG
T ss_pred             HHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--Hh
Confidence            9998875421                 0 01111 4577788875542       234677888899988886322  11


Q ss_pred             HhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437          423 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       423 i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      ++.  ..++.+.+.+.+.+...++.|+.+|..++.... ......+ ..+++.|+..+.+.++.+|..|..+|..+...-
T Consensus       366 ~~~--~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  442 (861)
T 2bpt_A          366 ILE--PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSV  442 (861)
T ss_dssp             GHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence            121  345556666667788999999999999997642 2222222 257888888888889999999999999888765


Q ss_pred             cc
Q 008437          502 QR  503 (565)
Q Consensus       502 ~~  503 (565)
                      ..
T Consensus       443 ~~  444 (861)
T 2bpt_A          443 AE  444 (861)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.93  E-value=5.3e-05  Score=79.78  Aligned_cols=234  Identities=7%  Similarity=0.034  Sum_probs=145.4

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCccch-hhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          217 RYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEAR-VFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       217 ~i~~ll~~L~s~~-~~~~q~~Al~~L~~La~~~~~~r-~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      .++.++..|.... +..+|..|++.+..++..-.+.- ......-+++.|...+.+    .+..++..++.+|..++...
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~  248 (462)
T 1ibr_B          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLY  248 (462)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHH
Confidence            4456677777653 68999999999998763211100 000001124445454443    67889999999999987432


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCC------------CC------chhhcc---CCchHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLD------------DA------KPIIGS---SHAVPFLVE  351 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~------------~~------k~~I~~---~g~i~~Lv~  351 (565)
                      .+.-...+..+.++.++..+...+  .+..|+..+..++...            +.      ...+..   ...+|.|++
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~  328 (462)
T 1ibr_B          249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ  328 (462)
T ss_dssp             GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHH
Confidence            211011111266777777776553  2445666555554321            00      001111   235677777


Q ss_pred             HhcCC------CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCccc--HHHH
Q 008437          352 LCKGK------TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG--KEEM  423 (565)
Q Consensus       352 lL~~~------~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~--r~~i  423 (565)
                      .|...      .+...+..|+.+|..|+..-..  .++ ..+++.+...+.+.+..+++.|+.+|..++.....  -...
T Consensus       329 ~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~  405 (462)
T 1ibr_B          329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL  405 (462)
T ss_dssp             HTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT
T ss_pred             HHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            77432      1346788999999998864331  222 24666677777788899999999999999974321  1111


Q ss_pred             hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437          424 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN  459 (565)
Q Consensus       424 ~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~  459 (565)
                      +  +..++.|+..|.+.++.++..|+++|.+++..-
T Consensus       406 l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          406 V--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             T--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             H--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            2  468899999999999999999999999998643

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.92  E-value=0.00053  Score=76.25  Aligned_cols=254  Identities=13%  Similarity=0.081  Sum_probs=165.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN  297 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n  297 (565)
                      +..+-..|.+. +...|.+++..|-.+.-.+.+.      .-+....++++.+    .+...+..+..++..++..+++.
T Consensus        36 ~~~ir~~l~~~-~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s----~~~~~Krl~Yl~~~~~~~~~~e~  104 (618)
T 1w63_A           36 CAAIRSSFREE-DNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIAS----QKFTDKRIGYLGAMLLLDERQDV  104 (618)
T ss_dssp             HHHHHHHHTTT-CTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHS----SSHHHHHHHHHHHHHHCCCCHHH
T ss_pred             HHHHHHHhhCC-CHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcC----CchHHHHHHHHHHHHHhCCCcHH
Confidence            44555667666 5666777666665553333221      2245566677776    67888888888888887432211


Q ss_pred             hHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437          298 KELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI  375 (565)
Q Consensus       298 k~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~  375 (565)
                      ..     -++..|.+-|.+++  .+..|+.+|.++...    . +. ...++.+.++|.+. ++.+++.|+.+|.++...
T Consensus       105 ~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~----~-~~-~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~  172 (618)
T 1w63_A          105 HL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS----E-MC-RDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRK  172 (618)
T ss_dssp             HH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH----H-HH-HHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH----H-HH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHH
Confidence            11     13566777777664  356688888888621    1 21 35678899999988 999999999999999863


Q ss_pred             CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc---------------C
Q 008437          376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT---------------G  440 (565)
Q Consensus       376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~---------------~  440 (565)
                      ..   .+++ +.++.|..++.+.++.++..|+.+|..++...........  ..++.|+++|..               .
T Consensus       173 ~p---~~v~-~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~  246 (618)
T 1w63_A          173 VP---ELME-MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGIS  246 (618)
T ss_dssp             CG---GGGG-GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred             Ch---HHHH-HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCC
Confidence            22   1222 6788888888888999999999999999876433222222  568888887753               3


Q ss_pred             CHHHHHHHHHHHHHhhcCChHHHHH-------H----------------------Hh--------CCcHHHHHHhhhcCC
Q 008437          441 ELIEQEQAVSCLFLLCNGNEKCCQM-------V----------------------LQ--------EGVIPALVSISVNGS  483 (565)
Q Consensus       441 s~~~~e~Av~~L~~Lc~~~~~~~~~-------v----------------------~~--------~G~v~~Lv~L~~~~s  483 (565)
                      ++..+-..+.+|..++..+++....       +                      ..        ..++..|..++.+.+
T Consensus       247 ~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d  326 (618)
T 1w63_A          247 DPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNND  326 (618)
T ss_dssp             CHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSS
T ss_pred             CChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCC
Confidence            7888888888888888765431110       0                      00        024455666666667


Q ss_pred             hhHHHHHHHHHHHHHhh
Q 008437          484 TRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       484 ~~~k~~A~~lL~~L~~~  500 (565)
                      +.+|.-|...|..+...
T Consensus       327 ~~vr~~aL~~L~~i~~~  343 (618)
T 1w63_A          327 KNIRYVALTSLLKTVQT  343 (618)
T ss_dssp             TTTHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhh
Confidence            77777777666665543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.91  E-value=0.00011  Score=71.20  Aligned_cols=179  Identities=17%  Similarity=0.108  Sum_probs=128.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhc-ccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437          220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE-SAVCERNSYAQEIGAMALFNLAVNNNRNK  298 (565)
Q Consensus       220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~s~~~~~q~~A~~aL~nLa~~~~~nk  298 (565)
                      .++..+.+. +|..|..|+..|..++...+.....- -..+++.|...|. +    .+..++..|+.+|..|+..   .+
T Consensus        19 ~l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd----~~~~V~~~a~~~l~~la~~---l~   89 (242)
T 2qk2_A           19 DFYDKLEEK-KWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKD----SNVVLVAMAGKCLALLAKG---LA   89 (242)
T ss_dssp             THHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHH---HG
T ss_pred             HHHhhhccC-CHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHH---Hh
Confidence            477788776 99999999999999987633221100 1244666667773 4    6889999999999999842   22


Q ss_pred             HHHHh--cCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437          299 ELMLA--AGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST  374 (565)
Q Consensus       299 ~~i~~--~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~  374 (565)
                      ..+..  ...++.|+..+....  .+..|..+|..+.....    +  ...++.|...|++. ++.++..++..|..+..
T Consensus        90 ~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~--~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~  162 (242)
T 2qk2_A           90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----L--EAQQESIVESLSNK-NPSVKSETALFIARALT  162 (242)
T ss_dssp             GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----H--HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----H--HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHH
Confidence            22221  246888888887764  35668888887754321    1  24678899999988 89999999999999654


Q ss_pred             CCC----ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC
Q 008437          375 IPS----NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS  416 (565)
Q Consensus       375 ~~~----nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~  416 (565)
                      ...    ....+  ..+++.|+.++.+.+..++..|..+|..++..
T Consensus       163 ~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          163 RTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             TCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            322    12222  25889999988889999999999999988863

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.82  E-value=0.00054  Score=65.63  Aligned_cols=222  Identities=15%  Similarity=0.112  Sum_probs=155.0

Q ss_pred             CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHH--HHHHHHHHHhcCC-CCC
Q 008437          260 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFL-DDA  336 (565)
Q Consensus       260 ~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~-~~~  336 (565)
                      .+..|+.+|..    .|..++.+|+.+|-.+-..-+.......=...++.++.++.+.+.+  -.|+.+|..|-.. +-.
T Consensus        34 ~l~~L~~LL~d----kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~  109 (265)
T 3b2a_A           34 ALFLILELAGE----DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG  109 (265)
T ss_dssp             HHHHHHHHTTS----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred             HHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence            46778888866    7899999999999998654223333333346799999999887654  4477788766443 222


Q ss_pred             chhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC
Q 008437          337 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS  416 (565)
Q Consensus       337 k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~  416 (565)
                      .....  -.+..|..++.++ +.-....|+..|.-|......+      +++..|..|+.+.++.++..++.+|.+++..
T Consensus       110 ~~~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          110 SKTFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred             HHHHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence            22222  2568899999988 8889999999999994333222      3456677777889999999999999999985


Q ss_pred             cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHh-CCcHHHHH-Hhh-hcCChhHHHHHHHH
Q 008437          417 AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ-EGVIPALV-SIS-VNGSTRGRDKAQRL  493 (565)
Q Consensus       417 ~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~-~G~v~~Lv-~L~-~~~s~~~k~~A~~l  493 (565)
                      .+...-+-   ..+.-+-.+|.+.++..++.|+.+|..+....-.  +.+.. --.+-..+ .|. ..|.+..+.+|..+
T Consensus       181 S~D~~i~~---~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v  255 (265)
T 3b2a_A          181 SADSGHLT---LILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--ENVKIELLKISRIVDGLVYREGAPIIRLKAKKV  255 (265)
T ss_dssp             CSSCCCGG---GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred             cCCHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--HhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            54332221   3445567788889999999999999999886521  11111 11122333 355 67999999999988


Q ss_pred             HHHHHh
Q 008437          494 LMLFRE  499 (565)
Q Consensus       494 L~~L~~  499 (565)
                      -..+..
T Consensus       256 ~~~le~  261 (265)
T 3b2a_A          256 SDLIDS  261 (265)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.79  E-value=0.0014  Score=72.99  Aligned_cols=252  Identities=12%  Similarity=0.153  Sum_probs=156.1

Q ss_pred             HHHHHHHHH--hcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          217 RYQDFLNVL--NEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       217 ~i~~ll~~L--~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      .++.+.+.|  .+. ++-+|.+|+..+..+.+.+++.   +...++++.|..+|.+    .|+.++..|+.+|..++..+
T Consensus       147 l~~~v~~~l~~~d~-~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d----~d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          147 FAGEIPKILVAGDT-MDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLND----QHLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             HTTHHHHHHHCSSS-CHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCC----CCccHHHHHHHHHHHHHHhC
Confidence            345566777  555 8999999999999998766532   2236899999999976    68999999999999987543


Q ss_pred             chhhHHHHhcCchHHHHHHhc----CC-------------cH--HHHHHHHHHHhcCCCC--CchhhccCCchHHHHHHh
Q 008437          295 NRNKELMLAAGVIPLLEKMIS----NS-------------NS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELC  353 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~----s~-------------~~--~~~A~aaL~nLs~~~~--~k~~I~~~g~i~~Lv~lL  353 (565)
                      .   ..+  ...++.++..|.    .+             +.  +.....+|..+...++  .+..+.  ..++.++..+
T Consensus       219 ~---~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~  291 (621)
T 2vgl_A          219 P---EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKA  291 (621)
T ss_dssp             H---HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHH
T ss_pred             h---HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhh
Confidence            2   211  123455554442    22             12  2223334433332211  111111  2333333322


Q ss_pred             cCCC--------C--HHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437          354 KGKT--------E--HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM  423 (565)
Q Consensus       354 ~~~~--------~--~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i  423 (565)
                      .+..        +  ..+.-.|+.++..+...+    .++. .++..|..++.+.++.++..++..|..++........+
T Consensus       292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~  366 (621)
T 2vgl_A          292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV  366 (621)
T ss_dssp             HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH
T ss_pred             ccCcccccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH
Confidence            1110        1  256677888888886322    2222 36777888887788999999999999998865333333


Q ss_pred             hcCCCCHHHHHHHhh-cCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          424 NSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       424 ~~~~g~v~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      .   .....++..|. +.+..++..|+.+|..++..+  +...     ++..|...+...+...++.+...+..+.
T Consensus       367 ~---~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~--Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          367 K---THIETVINALKTERDVSVRQRAVDLLYAMCDRS--NAQQ-----IVAEMLSYLETADYSIREEIVLKVAILA  432 (621)
T ss_dssp             H---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH--HHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh--hHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            3   35777888888 788999999999999998543  3332     2334445455556666666665555554

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.71  E-value=0.00024  Score=68.91  Aligned_cols=183  Identities=10%  Similarity=-0.018  Sum_probs=126.6

Q ss_pred             HHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhcc-CCchHHHHHHhc-CCCCHHHHHHHHHHHHHhccCCCChHHHH
Q 008437          309 LLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGS-SHAVPFLVELCK-GKTEHQCKLDALHALYNLSTIPSNIPNLL  383 (565)
Q Consensus       309 ~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~-~g~i~~Lv~lL~-~~~~~~~~~~Al~aL~nLs~~~~nk~~iv  383 (565)
                      .+...+.+.+  .+..|+..|..+... +....  .. ...++.|..+|. +. +..++..|+.+|..|+..-...-.-.
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4566666554  344466666655432 22110  11 246788888884 76 89999999999999985322111111


Q ss_pred             HcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhh-cCChH-
Q 008437          384 SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC-NGNEK-  461 (565)
Q Consensus       384 ~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc-~~~~~-  461 (565)
                      -.-+++.|+..+.+....+++.+..+|..++.... -.      ..++.|...|.+.++.+++.++..|..+. ..+++ 
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            23478888888888889999999999999987542 11      35677888888889999999999999954 43332 


Q ss_pred             HHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcc
Q 008437          462 CCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ  502 (565)
Q Consensus       462 ~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~  502 (565)
                      .....+ ..++|.|+.++.+...++|..|...|..+...-.
T Consensus       169 ~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          169 LNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             CCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence            111122 2578899999999999999999999998776543

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.70  E-value=5.2e-06  Score=71.77  Aligned_cols=45  Identities=20%  Similarity=0.500  Sum_probs=0.0

Q ss_pred             ccccccccccCCce-----------------e-cCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           73 LRCPISLQLMYDPV-----------------I-IASGQTYERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        73 f~CpI~~~~m~dPV-----------------~-~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      =.|+||++-|.+|.                 + ++|||.|.+.||.+|+.. +.+||.|++++.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            36999999998853                 2 489999999999999986 789999998753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.0003  Score=69.02  Aligned_cols=187  Identities=12%  Similarity=0.106  Sum_probs=126.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHH-HhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437          220 DFLNVLNEGENLGQKCNIVEQIRL-LLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN  297 (565)
Q Consensus       220 ~ll~~L~s~~~~~~q~~Al~~L~~-La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n  297 (565)
                      .+...|.+. +|..|..|+..|.. ++.+.++....-.. ...+..|...|..   ..+..++..|+.+|..|+..   -
T Consensus        20 ~f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~---D~n~~v~~~A~~al~~la~~---l   92 (249)
T 2qk1_A           20 DFQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK---DANIQAVALAAQSVELICDK---L   92 (249)
T ss_dssp             THHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHH---H
T ss_pred             hHHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHh---c
Confidence            456677777 99999999999999 87543322210112 2446666677732   16788999999999999842   2


Q ss_pred             h-HHHH-h--cCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhc-cCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437          298 K-ELML-A--AGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIG-SSHAVPFLVELCKGKTEHQCKLDALHAL  369 (565)
Q Consensus       298 k-~~i~-~--~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~-~~g~i~~Lv~lL~~~~~~~~~~~Al~aL  369 (565)
                      + ..+. .  .-++|.|+..+....  .+..+..+|..+... +..... . -...++.|+..|++. ++.++..++.+|
T Consensus        93 ~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k-~~~vk~~al~~l  170 (249)
T 2qk1_A           93 KTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHK-TPQIRMECTQLF  170 (249)
T ss_dssp             CTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCS-SHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence            2 1222 1  236888888887653  345566666665432 111110 0 124678899999998 899999999999


Q ss_pred             HHhccCCCCh-HHH---HHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437          370 YNLSTIPSNI-PNL---LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA  415 (565)
Q Consensus       370 ~nLs~~~~nk-~~i---v~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~  415 (565)
                      ..+....... ..+   +...++|.|.+++.+.+..+++.|..+|..++.
T Consensus       171 ~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          171 NASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9988644321 222   225789999998888999999999999998875

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.55  E-value=0.0017  Score=77.73  Aligned_cols=269  Identities=13%  Similarity=0.105  Sum_probs=167.6

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.++..+.+..++.++..|+..|..++......-.. .-...++.|+..|.+    .+..++..|+.+|..++....
T Consensus       133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~----~~~~vR~~a~~al~~l~~~~~  207 (1230)
T 1u6g_C          133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTS----PRLAVRKRTIIALGHLVMSCG  207 (1230)
T ss_dssp             HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGC----SSHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHhcC
Confidence            466778888874238899999999999998543221100 012344455555544    678899999999999974322


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCc---HHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSN---SHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALY  370 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~---~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~~~~~Al~aL~  370 (565)
                         ..+ -...++.|+..|....   .+..++.++..++.... + .+..  ...++.++..+.+. +++++..++.++.
T Consensus       208 ---~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~-~~~~~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~  280 (1230)
T 1u6g_C          208 ---NIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-H-RIGEYLEKIIPLVVKFCNVD-DDELREYCIQAFE  280 (1230)
T ss_dssp             -------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-G-GGTTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHH
T ss_pred             ---HHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-H-HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence               112 2246888888885432   23345555555443211 1 2222  46889999999877 7888999999998


Q ss_pred             HhccCCC--ChHHHHHcCchHHHhhccCC-------------------------------------CChHHHHHHHHHHH
Q 008437          371 NLSTIPS--NIPNLLSAGIISGLQSLAVP-------------------------------------GDPMWTEKSLAVLL  411 (565)
Q Consensus       371 nLs~~~~--nk~~iv~~G~v~~Lv~Ll~~-------------------------------------~~~~~~e~al~~L~  411 (565)
                      .++..-.  .+..+  ..+++.++..+..                                     ....+++.|+.+|.
T Consensus       281 ~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~  358 (1230)
T 1u6g_C          281 SFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD  358 (1230)
T ss_dssp             HHHHCTTCCCHHHH--HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHH
T ss_pred             HHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHH
Confidence            8875322  22221  2356666663321                                     01235677888888


Q ss_pred             HHhcCcc-cHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh----------------HHHHHH--HhCCcH
Q 008437          412 NLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE----------------KCCQMV--LQEGVI  472 (565)
Q Consensus       412 nLa~~~~-~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~----------------~~~~~v--~~~G~v  472 (565)
                      .++.... .-..++.  ..++.|+..+...++.++..|+.+|..++..-.                +....+  .-..++
T Consensus       359 ~l~~~~~~~~~~~~~--~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll  436 (1230)
T 1u6g_C          359 AVVSTRHEMLPEFYK--TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIV  436 (1230)
T ss_dssp             HHHTTCCTTHHHHHT--TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHH
T ss_pred             HHHHhchhHHHHHHH--HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHH
Confidence            8887432 2344443  578888888877788899999999887764210                011111  123456


Q ss_pred             HHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          473 PALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       473 ~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      +.+...+.+.+.++|..+..+|..+...
T Consensus       437 ~~l~~~l~~~~~~vr~~~~~~L~~l~~~  464 (1230)
T 1u6g_C          437 KALHKQMKEKSVKTRQCCFNMLTELVNV  464 (1230)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            6666668888899998888888887655

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.53  E-value=9.2e-06  Score=71.38  Aligned_cols=118  Identities=15%  Similarity=0.062  Sum_probs=66.7

Q ss_pred             CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437          344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM  423 (565)
Q Consensus       344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i  423 (565)
                      ..++.|+.+|.++ ++.++..|+.+|..+-.           ..++.|+.++.+.++.++..|+.+|.++..        
T Consensus        12 ~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A           12 SGLVPRGSHMADE-NKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ---------CCSS-CCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence            4556666666665 56666666666554421           124666666666667777777777666542        


Q ss_pred             hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHH
Q 008437          424 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM  495 (565)
Q Consensus       424 ~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~  495 (565)
                         ...++.|+.+|.+.++.++..|+.+|..+..           ..+++.|+.++.+.++.++..|...|.
T Consensus        72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence               1346666667766677777777777766541           123566666666666677766666553

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.0016  Score=63.74  Aligned_cols=185  Identities=10%  Similarity=0.043  Sum_probs=125.6

Q ss_pred             HHHhcCCc--HHHHHHHHHHH-hcCCCCCchhh---cc-CCchHHHHHHh-cCCCCHHHHHHHHHHHHHhccCC---CCh
Q 008437          311 EKMISNSN--SHGAATALYLN-LSFLDDAKPII---GS-SHAVPFLVELC-KGKTEHQCKLDALHALYNLSTIP---SNI  379 (565)
Q Consensus       311 v~lL~s~~--~~~~A~aaL~n-Ls~~~~~k~~I---~~-~g~i~~Lv~lL-~~~~~~~~~~~Al~aL~nLs~~~---~nk  379 (565)
                      ...|.+.+  .+..|+..|.. +...  +...+   .. ...+..|.+.| ++. +..++..|+.+|..|+..-   .-.
T Consensus        22 ~~~l~s~~w~eRk~al~~L~~~~~~~--~~~i~~~~~~~~~~~~~L~~~l~~D~-n~~v~~~A~~al~~la~~l~~~~f~   98 (249)
T 2qk1_A           22 QERITSSKWKDRVEALEEFWDSVLSQ--TKKLKSTSQNYSNLLGIYGHIIQKDA-NIQAVALAAQSVELICDKLKTPGFS   98 (249)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTGGG--CCCBCCTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHhc--CCccccCcccHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhccccccc
Confidence            34455553  34456666666 5422  12222   22 24677888888 555 8899999999999998422   222


Q ss_pred             -HHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhc-CCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437          380 -PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS-TPGLVSGLATVLDTGELIEQEQAVSCLFLLCN  457 (565)
Q Consensus       380 -~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~-~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~  457 (565)
                       ..+.  -+++.|++.+.+....+++.+..+|..++..-.. ..... -+.+++.|...|.+.++.+++.++.+|..++.
T Consensus        99 ~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A           99 KDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             HHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence             2222  2788999988888888989988888888873211 00000 11356678888888899999999999999886


Q ss_pred             CChH---HHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437          458 GNEK---CCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       458 ~~~~---~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      ....   .-...+...++|.|..++.+.+..+|+.|...|..+...-
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v  222 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF  222 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            5442   1112223678999999999999999999999999876553

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.04  E-value=0.014  Score=67.72  Aligned_cols=262  Identities=14%  Similarity=0.145  Sum_probs=164.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc---chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE---ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~---~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      +..+.+.+... ...  ..|+..+..++.....   .-..+  .+.++.++..+.+    .+..++..|..++..+... 
T Consensus        56 ~~~~~~~~~~k-~~~--~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~d----k~~~v~~aa~~~~~~~~~~-  125 (986)
T 2iw3_A           56 FGELAKGIKDK-KTA--ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAGN----KDKEIQSVASETLISIVNA-  125 (986)
T ss_dssp             HHHHHHHHTSH-HHH--HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTTC----SSHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhcc-CCH--HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHh-
Confidence            34555555432 112  7888889998854421   11112  2456666666655    4567887777666666432 


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCcH---HHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHAL  369 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~~~~~Al~aL  369 (565)
                       -+...+  ..++|.|+..|.++..   +..|..++..|+...  ...++.  ...||.+-+.+.+- .+++++.|..++
T Consensus       126 -~~~~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~  199 (986)
T 2iw3_A          126 -VNPVAI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDT-KKEVKAAATAAM  199 (986)
T ss_dssp             -SCGGGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHH
T ss_pred             -CCHHHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccC-cHHHHHHHHHHH
Confidence             122222  4568999999976643   344666666666432  455544  46788888888776 899999999999


Q ss_pred             HHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437          370 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV  449 (565)
Q Consensus       370 ~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av  449 (565)
                      ..+|..-+|+..   ...||.|++-+.+++.  ...++..|..-....+--...+.  -.+|.|.+=|...+...+..++
T Consensus       200 ~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~  272 (986)
T 2iw3_A          200 TKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSA  272 (986)
T ss_dssp             HHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHH
T ss_pred             HHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeE
Confidence            999976666543   3468889984433322  34455544443333322222221  1345555556666888899999


Q ss_pred             HHHHHhhc--CChHHHHHHHhCCcHHHHHHhhhc-CChhHHHHHHHHHHHHHhhccc
Q 008437          450 SCLFLLCN--GNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFREQRQR  503 (565)
Q Consensus       450 ~~L~~Lc~--~~~~~~~~v~~~G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L~~~r~~  503 (565)
                      -+.-|+|+  +++..... .-...+|.|-....+ ..|++|+.|..++..|.+....
T Consensus       273 ~~~~n~~~lv~~~~~~~~-f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          273 VIIDNMCKLVEDPQVIAP-FLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HHHHHHHTTCCCHHHHHH-HHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEcchhhhcCCHHHHhh-hhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence            99999998  44432222 234667777665444 7899999999999999887554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=96.99  E-value=0.014  Score=64.87  Aligned_cols=258  Identities=14%  Similarity=0.134  Sum_probs=151.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      +....++.+++. +...|.-+--.+..+++.+++.-         -..++.+.....+.++.++-.|+.+|.++.  .++
T Consensus        75 ~~~~vvkl~~s~-~~~~Krl~YL~l~~~~~~~~e~~---------~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e  142 (621)
T 2vgl_A           75 GHMEAVNLLSSN-RYTEKQIGYLFISVLVNSNSELI---------RLINNAIKNDLASRNPTFMGLALHCIANVG--SRE  142 (621)
T ss_dssp             CHHHHHHGGGCS-CHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHH
T ss_pred             hHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCcHHH---------HHHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHH
Confidence            556777877776 88888888888888886654322         222333333333478999999999999985  222


Q ss_pred             hhHHHHhcCchHHHHHHh--cCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          297 NKELMLAAGVIPLLEKMI--SNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL--~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                          ++ ...++.+...|  .+.+  .+..|+-++..+....  ...+...+.++.|.++|.+. ++.++.+|+.+|..+
T Consensus       143 ----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i  214 (621)
T 2vgl_A          143 ----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--PDLVPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTL  214 (621)
T ss_dssp             ----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GGGCCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred             ----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hhhcCchhHHHHHHHHhCCC-CccHHHHHHHHHHHH
Confidence                22 24678888888  5443  3566777777665432  23333358999999999877 999999999999999


Q ss_pred             ccCCCC-----hH-------HHHHcCch----------------HHHhhcc----CCCChHHHHHHHHHHHHHhc----C
Q 008437          373 STIPSN-----IP-------NLLSAGII----------------SGLQSLA----VPGDPMWTEKSLAVLLNLAA----S  416 (565)
Q Consensus       373 s~~~~n-----k~-------~iv~~G~v----------------~~Lv~Ll----~~~~~~~~e~al~~L~nLa~----~  416 (565)
                      +.....     ..       .++..+..                -.+++++    ..+++...+....+|..+..    .
T Consensus       215 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~  294 (621)
T 2vgl_A          215 AQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEP  294 (621)
T ss_dssp             HHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence            864321     11       11111101                0111211    11233333332222222211    0


Q ss_pred             c-------ccH------------------HHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCc
Q 008437          417 A-------AGK------------------EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV  471 (565)
Q Consensus       417 ~-------~~r------------------~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~  471 (565)
                      +       .+.                  ..+..  .++..|..+|.+.++.++-.|+..|..++...+. ...+  ...
T Consensus       295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~--~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~  369 (621)
T 2vgl_A          295 PKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV--RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAV--KTH  369 (621)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTT
T ss_pred             cccccccccchHHHHHHHHHHHHHhcCCcHHHHH--HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH--HHH
Confidence            0       000                  01111  2456666777667788888888888888765431 1122  123


Q ss_pred             HHHHHHhhh-cCChhHHHHHHHHHHHHHh
Q 008437          472 IPALVSISV-NGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       472 v~~Lv~L~~-~~s~~~k~~A~~lL~~L~~  499 (565)
                      ...++..+. +.+..+|.+|..+|..|..
T Consensus       370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~  398 (621)
T 2vgl_A          370 IETVINALKTERDVSVRQRAVDLLYAMCD  398 (621)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence            556666666 7788888888888776653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.99  E-value=0.00066  Score=59.26  Aligned_cols=88  Identities=15%  Similarity=0.122  Sum_probs=74.9

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh
Q 008437          345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN  424 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~  424 (565)
                      .++.|+++|.+. ++.++..|+++|.++..          ..+++.|+.++.+.+..++..|+.+|.++..         
T Consensus        43 ~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------  102 (131)
T 1te4_A           43 AFEPLLESLSNE-DWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------  102 (131)
T ss_dssp             THHHHHHGGGCS-CHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------
T ss_pred             HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------
Confidence            479999999988 99999999999998853          2368899998888899999999999998852         


Q ss_pred             cCCCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008437          425 STPGLVSGLATVLDTGELIEQEQAVSCLFL  454 (565)
Q Consensus       425 ~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~  454 (565)
                        ..+++.|+.+|.+.++.++..|+.+|..
T Consensus       103 --~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A          103 --ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             --HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence              2467889999988899999999988864

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=96.96  E-value=0.065  Score=56.80  Aligned_cols=220  Identities=12%  Similarity=0.029  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHHHhhccCchhhHHHHhcC--chHHHHHHhcC----Cc-------------H--HHHHHHHHHHhcCCCC
Q 008437          277 SYAQEIGAMALFNLAVNNNRNKELMLAAG--VIPLLEKMISN----SN-------------S--HGAATALYLNLSFLDD  335 (565)
Q Consensus       277 ~~~q~~A~~aL~nLa~~~~~nk~~i~~~G--~i~~Lv~lL~s----~~-------------~--~~~A~aaL~nLs~~~~  335 (565)
                      ...+..++.+|..|.. .++.|..+.+.+  .++.++.++..    ..             .  .-+++-+++.|+..++
T Consensus       182 ~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~  260 (480)
T 1ho8_A          182 MDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV  260 (480)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred             CchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH
Confidence            3456667888888764 577888887653  37777665541    11             1  2347778888998876


Q ss_pred             CchhhccCCch--HHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChH-----HHHHcCchHHHhh-ccCC--CChHHHH
Q 008437          336 AKPIIGSSHAV--PFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIP-----NLLSAGIISGLQS-LAVP--GDPMWTE  404 (565)
Q Consensus       336 ~k~~I~~~g~i--~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~-----~iv~~G~v~~Lv~-Ll~~--~~~~~~e  404 (565)
                      ....+...+.+  +.|+.+++......+.+-++.+|.||.... ++..     .++..++ +.+++ |...  .|+.+.+
T Consensus       261 ~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e  339 (480)
T 1ho8_A          261 FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ  339 (480)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred             HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence            65666555543  678888887767889999999999998754 2222     2233444 45656 4333  4555554


Q ss_pred             HHHHHHHH-------HhcCcccHHHH------------------------hcC-CCCHHHHHHHhhc----------CCH
Q 008437          405 KSLAVLLN-------LAASAAGKEEM------------------------NST-PGLVSGLATVLDT----------GEL  442 (565)
Q Consensus       405 ~al~~L~n-------La~~~~~r~~i------------------------~~~-~g~v~~Lv~lL~~----------~s~  442 (565)
                      ..-.+...       |++.++.+.++                        .+. ...+..|+++|.+          .++
T Consensus       340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~  419 (480)
T 1ho8_A          340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK  419 (480)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence            33322222       22222222222                        111 1357889999974          245


Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          443 IEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       443 ~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      .+..-|+.=+..++++-++-+..+.+-|+=..++.|+.+.++.+|..|-.+++.+-
T Consensus       420 ~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          420 IIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             ceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            66667777778888877766777777898888899999999999999998887753

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.95  E-value=0.027  Score=64.73  Aligned_cols=220  Identities=11%  Similarity=0.001  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHH
Q 008437          231 LGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLL  310 (565)
Q Consensus       231 ~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~L  310 (565)
                      ..++..|+..|....-++.       ...+++.|..+|..    .+..+.+.|+.+|.-+-.+ ..|..      ++..|
T Consensus       451 ~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~d----d~~~~~~~AalALGli~vG-Tgn~~------ai~~L  512 (963)
T 4ady_A          451 DVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYN----DSATSGEAAALGMGLCMLG-TGKPE------AIHDM  512 (963)
T ss_dssp             HHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTT-CCCHH------HHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhc----CCHHHHHHHHHHHhhhhcc-cCCHH------HHHHH
Confidence            3455555555555432211       12246778888865    3455556666666654322 22222      34555


Q ss_pred             HHHhcCC-c--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCc
Q 008437          311 EKMISNS-N--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGI  387 (565)
Q Consensus       311 v~lL~s~-~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~  387 (565)
                      +..+... +  .+..++..|..+        .++....++.|+++|....++-++..++.++.--.....|..      +
T Consensus       513 L~~~~e~~~e~vrR~aalgLGll--------~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------a  578 (963)
T 4ady_A          513 FTYSQETQHGNITRGLAVGLALI--------NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------A  578 (963)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHH--------TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------H
T ss_pred             HHHHhccCcHHHHHHHHHHHHhh--------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------H
Confidence            5555332 2  223344444333        234556789999998765477788877777765555444532      4


Q ss_pred             hHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCChHHHHH
Q 008437          388 ISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL-DTGELIEQEQAVSCLFLLCNGNEKCCQM  465 (565)
Q Consensus       388 v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL-~~~s~~~~e~Av~~L~~Lc~~~~~~~~~  465 (565)
                      |+.|+. +..+.+..++..|+..|..++....         ..++.++.+| ...++.+|..|+.+|..+|..++.    
T Consensus       579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----  645 (963)
T 4ady_A          579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----  645 (963)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----
Confidence            566777 4555677788888888888766542         4566777655 457899999999999999876652    


Q ss_pred             HHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          466 VLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       466 v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                         ..++..|..++.+.++.++..|...|-++-
T Consensus       646 ---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          646 ---QSAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             ---HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence               123455566666667777766666665544

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=96.86  E-value=0.011  Score=59.78  Aligned_cols=151  Identities=13%  Similarity=0.065  Sum_probs=113.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .+..++..|.++ +.+.+..++..|+.+...+.+.-..++..+++..|+.+...    .+...|..++.+|.+|-. ...
T Consensus       119 ra~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~----~~gN~q~Y~L~AL~~LM~-~v~  192 (339)
T 3dad_A          119 RVNAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA----ADHNYQSYILRALGQLML-FVD  192 (339)
T ss_dssp             HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT----SCHHHHHHHHHHHHHHTT-SHH
T ss_pred             HHHHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh----cChHHHHHHHHHHHHHHh-ccc
Confidence            567888999887 88999999999999655777788888899999999999987    578899999999999964 444


Q ss_pred             hhHHHH-hcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC-Cchhhcc--------C--CchHHHHHHhc---CCCCH
Q 008437          297 NKELML-AAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD-AKPIIGS--------S--HAVPFLVELCK---GKTEH  359 (565)
Q Consensus       297 nk~~i~-~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~-~k~~I~~--------~--g~i~~Lv~lL~---~~~~~  359 (565)
                      .-..++ +...|..|..++.+...  ...|..+|..+....+ +...+..        .  -....|+.+|.   .+ +.
T Consensus       193 Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~-D~  271 (339)
T 3dad_A          193 GMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA-DP  271 (339)
T ss_dssp             HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC-CH
T ss_pred             cccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC-CH
Confidence            554555 45678888888886532  3558888888765543 3322221        1  13789999997   45 88


Q ss_pred             HHHHHHHHHHHHhcc
Q 008437          360 QCKLDALHALYNLST  374 (565)
Q Consensus       360 ~~~~~Al~aL~nLs~  374 (565)
                      +.+.+|+..|-.+-.
T Consensus       272 elq~~amtLIN~lL~  286 (339)
T 3dad_A          272 ELLVYTVTLINKTLA  286 (339)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999998887666543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.71  E-value=0.0016  Score=51.27  Aligned_cols=47  Identities=19%  Similarity=0.412  Sum_probs=37.1

Q ss_pred             cccccccccccCCcee-cCCCcccchHHHHHHHhc-CCCCCCCCCCCCC
Q 008437           72 ELRCPISLQLMYDPVI-IASGQTYERICIEKWLSD-GHSTCPKTQQKLP  118 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~-~~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~  118 (565)
                      .-.|.||.+++..=+. ..|||.|=..||.+||.. +..+||.|++++.
T Consensus        15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            3569999988864332 269999999999999975 2489999998765

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.62  E-value=0.25  Score=45.70  Aligned_cols=211  Identities=15%  Similarity=0.165  Sum_probs=137.6

Q ss_pred             cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH---HHHHHHHHHHhcCCC
Q 008437          258 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLD  334 (565)
Q Consensus       258 ~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~A~aaL~nLs~~~  334 (565)
                      ..++..++.+|.+    .--.+|.+|+..|.+++..-++....+     +..|+.+++.++.   ....+.++..++.. 
T Consensus        31 ~~~l~~lI~~LDD----DlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i-  100 (253)
T 2db0_A           31 ESVLKKLIELLDD----DLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-  100 (253)
T ss_dssp             HHHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhcc----HHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh-
Confidence            3467888899876    335699999999999985433333322     4455566654432   23333444444321 


Q ss_pred             CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH
Q 008437          335 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL  413 (565)
Q Consensus       335 ~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL  413 (565)
                        +..+. .+.+|.|..=.+-+ +++.+.+-..+|-.+.. +++--     .+++.-+..++.+.+..   .=+.+|.-+
T Consensus       101 --~Pe~v-~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~---Dkl~aLnFi  168 (253)
T 2db0_A          101 --KPELV-KSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNRE---DKLTALNFI  168 (253)
T ss_dssp             --CHHHH-HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHH---HHHHHHHHH
T ss_pred             --CHHHH-HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChH---HHHHHHHHH
Confidence              11111 24666676667778 99999999999988864 22222     24555667777766644   334455555


Q ss_pred             hcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHH
Q 008437          414 AASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL  493 (565)
Q Consensus       414 a~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~l  493 (565)
                      ..-.++.-..+.  -.++.|..+|.+.+..++..|+.+|.+|+.-++..+..+.      ..+.-+.+.++-++.+....
T Consensus       169 ~alGen~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~eg  240 (253)
T 2db0_A          169 EAMGENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEG  240 (253)
T ss_dssp             HTCCTTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHH
T ss_pred             HHHhccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHH
Confidence            555566666665  5899999999999999999999999999999887655432      23444556677777777777


Q ss_pred             HHHHH
Q 008437          494 LMLFR  498 (565)
Q Consensus       494 L~~L~  498 (565)
                      |..+.
T Consensus       241 L~rl~  245 (253)
T 2db0_A          241 ISRLL  245 (253)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.52  E-value=0.045  Score=56.30  Aligned_cols=248  Identities=13%  Similarity=0.057  Sum_probs=142.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .+...++.+.+. +...|.-.--.+..+++..++.-  ++    +..|.+=+.+    .++-++-.|+.+|.++..  ++
T Consensus        69 lf~~v~kl~~s~-d~~lKrLvYLyl~~~~~~~~e~i--Lv----~Nsl~kDl~~----~N~~iR~lALRtL~~I~~--~~  135 (355)
T 3tjz_B           69 AFFAMTKLFQSN-DPTLRRMCYLTIKEMSCIAEDVI--IV----TSSLTKDMTG----KEDSYRGPAVRALCQITD--ST  135 (355)
T ss_dssp             HHHHHHGGGGCC-CHHHHHHHHHHHHHHTTTSSCGG--GG----HHHHHHHHHS----SCHHHHHHHHHHHHHHCC--TT
T ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCHHHHH--HH----HHHHHhhcCC----CcHhHHHHHHHHHhcCCC--HH
Confidence            345556777776 88888888888888887644322  32    5556666655    788999999999999963  33


Q ss_pred             hhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437          297 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST  374 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~  374 (565)
                      .-..     ..+.+...|.+.+.  +..|+-+...|.  +.+.+.+  .++++.+-+++.+. ++.+.-+|+.+|+.++.
T Consensus       136 m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~--~~~pe~v--~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~  205 (355)
T 3tjz_B          136 MLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLL--KCSFDVV--KRWVNEAQEAASSD-NIMVQYHALGLLYHVRK  205 (355)
T ss_dssp             THHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHT--TTCHHHH--HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHh--ccCHHHH--HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHh
Confidence            3222     34556667766544  455555555554  3334444  26899999999888 89999999999999987


Q ss_pred             CCCChHHHHHcCchHHHhhccCCC---ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHH
Q 008437          375 IPSNIPNLLSAGIISGLQSLAVPG---DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC  451 (565)
Q Consensus       375 ~~~nk~~iv~~G~v~~Lv~Ll~~~---~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~  451 (565)
                      .+  +.      ++..|+.-+..+   ++-.+-..+.++..++..++..    .....+..|..+|++.++.+.-.|+.+
T Consensus       206 ~d--~~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~  273 (355)
T 3tjz_B          206 ND--RL------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASA  273 (355)
T ss_dssp             TC--HH------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHH
T ss_pred             hc--hH------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            54  21      344455522222   3333333444444443322111    112455666777788899999999999


Q ss_pred             HHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcccC
Q 008437          452 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD  504 (565)
Q Consensus       452 L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~~  504 (565)
                      +..|...+..    .. ..++..|..++.+.++.+|--|...|..+...++.-
T Consensus       274 I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~  321 (355)
T 3tjz_B          274 IVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA  321 (355)
T ss_dssp             HTC----------------CCCTHHHHHHSSSSSSHHHHHHCC----------
T ss_pred             HHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH
Confidence            9887653321    11 344667777788888899988888888777554433

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.52  E-value=0.027  Score=60.39  Aligned_cols=251  Identities=11%  Similarity=0.095  Sum_probs=153.8

Q ss_pred             ccchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc--chhhhhccCCHHHHHHHhccc-c----c-CCCHHHHHH
Q 008437          211 GNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESA-V----C-ERNSYAQEI  282 (565)
Q Consensus       211 ~~~~~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s~-~----~-s~~~~~q~~  282 (565)
                      +|.. +.+..|+..|-+. .|++|-.|+-.||.+.+....  .|..-......-.|+.+|.-. .    . .--..++|.
T Consensus       170 eWPf-qfcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRET  247 (800)
T 3oc3_A          170 ENVL-DFFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDA  247 (800)
T ss_dssp             CSGG-GTTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHH
T ss_pred             CCHH-HHHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHH
Confidence            4444 3778888888887 999999999999999876432  121111124445555555321 1    0 112468999


Q ss_pred             HHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhcc-CCchHHHHHHhcCCCCHHH
Q 008437          283 GAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQC  361 (565)
Q Consensus       283 A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~~  361 (565)
                      ++++|..+ .+-+..      ..++..|+..+... .++...+.|..|-..   +..+.. .++++.++.-|.+. +.++
T Consensus       248 aAQtLGaL-~hLp~e------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~DLL~~Ld~Vv~aVL~GL~D~-DDDV  315 (800)
T 3oc3_A          248 AAYLLSRI-YPLIGP------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KEFVEDKDGLCRKLVSLLSSP-DEDI  315 (800)
T ss_dssp             HHHHHHHH-TTTSCS------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GGGCCCHHHHHHHHHHHTTCS-SHHH
T ss_pred             HHHHHHHH-HhCChh------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HHHHHHHHHHHHHHHhhcCCc-ccHH
Confidence            99999888 553332      23444444433333 344433333332221   333332 46778888888888 8899


Q ss_pred             HHHHHHHHHHhccCCCChHHHHHcCchHHHhhccC--CCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc
Q 008437          362 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV--PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT  439 (565)
Q Consensus       362 ~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~--~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~  439 (565)
                      +..|+.+|.-++ .++....+     +..|-+.|.  ++-.......+.+|+.|+..+.   .....+..||.|...++.
T Consensus       316 RAVAAetLiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~---~a~~dp~LVPRL~PFLRH  386 (800)
T 3oc3_A          316 KLLSAELLCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENP---ELSIPPERLKDIFPCFTS  386 (800)
T ss_dssp             HHHHHHHHTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT---TCCCCSGGGGGTGGGGTC
T ss_pred             HHHHHHHhhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc---ccccChHHHHHHHhhhcC
Confidence            999999999998 22222222     222333221  1112334667788888888663   122335788889999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHH-HhhhcCChhHHHHHHHHHH
Q 008437          440 GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALV-SISVNGSTRGRDKAQRLLM  495 (565)
Q Consensus       440 ~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv-~L~~~~s~~~k~~A~~lL~  495 (565)
                      .-..+|..++.+|..+.  ..         .++..+. .++...++.+++.+..+.+
T Consensus       387 tITSVR~AVL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          387 PVPEVRTSILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             SSHHHHHHHHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            99999999999998877  11         2233332 4777888888888887775

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.46  E-value=0.4  Score=55.17  Aligned_cols=168  Identities=12%  Similarity=0.061  Sum_probs=112.4

Q ss_pred             CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC-cH-HHHHHHHHHHhcCCCCCc
Q 008437          260 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS-NS-HGAATALYLNLSFLDDAK  337 (565)
Q Consensus       260 ~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~-~~-~~~A~aaL~nLs~~~~~k  337 (565)
                      ++..|+..+...   .+..+++.++..|..+...++         ..++.+++.|... +. ...+++....++...   
T Consensus       508 ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaG---  572 (963)
T 4ady_A          508 AIHDMFTYSQET---QHGNITRGLAVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAG---  572 (963)
T ss_dssp             HHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT---
T ss_pred             HHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC---
Confidence            456677665432   456777778777777654433         3467777777542 22 233333333343321   


Q ss_pred             hhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcC
Q 008437          338 PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAAS  416 (565)
Q Consensus       338 ~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~  416 (565)
                        .+...+|..|++.+.+..+..++..|+.+|..+...++        ..++.++. |+.+.++.++..+..+|..++..
T Consensus       573 --TGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aG  642 (963)
T 4ady_A          573 --TGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAG  642 (963)
T ss_dssp             --SCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred             --CCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence              12234677788777655577899999999998775543        35777888 66778999999999999999875


Q ss_pred             cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437          417 AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN  459 (565)
Q Consensus       417 ~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~  459 (565)
                      ... .      .++..|..++.+.+..++..|+.+|..+-...
T Consensus       643 n~~-~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt  678 (963)
T 4ady_A          643 KGL-Q------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ  678 (963)
T ss_dssp             SCC-H------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred             CCc-H------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence            432 1      24556777777889999999999999887643

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=96.41  E-value=0.0029  Score=47.70  Aligned_cols=47  Identities=19%  Similarity=0.308  Sum_probs=39.0

Q ss_pred             cccccccccccCCceecCCCc-----ccchHHHHHHHhc-CCCCCCCCCCCCC
Q 008437           72 ELRCPISLQLMYDPVIIASGQ-----TYERICIEKWLSD-GHSTCPKTQQKLP  118 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~~~~g~-----ty~r~~I~~~~~~-~~~~cP~t~~~l~  118 (565)
                      .-.|.||++-..+|.+.||..     -|=+.||++|+.. ++.+||+|+.++.
T Consensus         6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            456999998888898888653     6889999999984 6789999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.25  E-value=0.41  Score=55.45  Aligned_cols=219  Identities=15%  Similarity=0.104  Sum_probs=143.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .++.++..+..- ...+|..|-.++..+.+.-+..-  +  ..++|.|+..|.+.   ..-..+..|+.+|..|+..   
T Consensus        96 ~~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~---~kw~~k~~~l~~~~~~~~~---  164 (986)
T 2iw3_A           96 LVPAICTNAGNK-DKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVET---NKWQEKIAILAAFSAMVDA---  164 (986)
T ss_dssp             THHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHH---
Confidence            445666666655 67888888888888875432211  1  45688999888652   3467888899999999742   


Q ss_pred             hhHHHHh--cCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          297 NKELMLA--AGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       297 nk~~i~~--~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      ....+..  ...||.+...+....  ....|..++..++..-+|+...   ..||.||+.+.++ +.  .-.++..|..-
T Consensus       165 ~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~---~~~~~~~~~~~~p-~~--~~~~~~~l~~~  238 (986)
T 2iw3_A          165 AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE---RFIPSLIQCIADP-TE--VPETVHLLGAT  238 (986)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG---GGHHHHHHHHHCT-TH--HHHHHHHHTTC
T ss_pred             hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh---hhHHHHHHHhcCh-hh--hHHHHHHhhcC
Confidence            2455543  367888888776553  3455777777776655555544   4799999999877 32  33344444433


Q ss_pred             ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC---cccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHH
Q 008437          373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS---AAGKEEMNSTPGLVSGLATVLDT-GELIEQEQA  448 (565)
Q Consensus       373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~---~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~A  448 (565)
                      ....+.-..... =.+|.|.+=|......++..++-++.|||.-   +.....++  +..+|.|-+..++ .+|++++.|
T Consensus       239 tfv~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~  315 (986)
T 2iw3_A          239 TFVAEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVT  315 (986)
T ss_dssp             CCCSCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHH
T ss_pred             eeEeeecchhHH-HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHH
Confidence            333332222111 1455555545666788889999999999983   33444444  4678888777766 789999988


Q ss_pred             HHHHHHh
Q 008437          449 VSCLFLL  455 (565)
Q Consensus       449 v~~L~~L  455 (565)
                      -.++..|
T Consensus       316 ~~a~~~l  322 (986)
T 2iw3_A          316 LRALKTL  322 (986)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877766

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.14  E-value=0.05  Score=55.94  Aligned_cols=211  Identities=11%  Similarity=0.046  Sum_probs=124.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN  297 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n  297 (565)
                      +..+.+-+.+. ++-+|..|++.|..+...           ..++.+...+..+..+.++-++..|+.+...|...   +
T Consensus       106 ~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~-----------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~---~  170 (355)
T 3tjz_B          106 TSSLTKDMTGK-EDSYRGPAVRALCQITDS-----------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC---S  170 (355)
T ss_dssp             HHHHHHHHHSS-CHHHHHHHHHHHHHHCCT-----------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT---C
T ss_pred             HHHHHhhcCCC-cHhHHHHHHHHHhcCCCH-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc---C
Confidence            45677888887 899999999988888632           23555555555544447899999999999988643   3


Q ss_pred             hHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC-C-CHHHHHHHHHHHHHhc
Q 008437          298 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-T-EHQCKLDALHALYNLS  373 (565)
Q Consensus       298 k~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~-~-~~~~~~~Al~aL~nLs  373 (565)
                      ...+ + +.+..+-+++.+.+.  ..+|.++|..+...+        ..++..|+.-|..+ . ++-++..-++.+..++
T Consensus       171 pe~v-~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~  240 (355)
T 3tjz_B          171 FDVV-K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQL  240 (355)
T ss_dssp             HHHH-H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-
T ss_pred             HHHH-H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhc
Confidence            3333 2 688889999977653  456888888886543        11456666666553 1 3545554555554544


Q ss_pred             cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437          374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF  453 (565)
Q Consensus       374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~  453 (565)
                      ..++.   -.....++.|...+++.+..+.-.|+.+|..|...+.   ....  .++..|..+|.+.++.+|--|+..|.
T Consensus       241 ~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~---~~~~--~a~~~L~~fLss~d~niryvaLr~L~  312 (355)
T 3tjz_B          241 EDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA---KELA--PAVSVLQLFCSSPKAALRYAAVRTLN  312 (355)
T ss_dssp             -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred             cccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH---HHHH--HHHHHHHHHHcCCCchHHHHHHHHHH
Confidence            43210   0123455666667888889999999999988865322   1222  45667777888889999999999998


Q ss_pred             HhhcCChH
Q 008437          454 LLCNGNEK  461 (565)
Q Consensus       454 ~Lc~~~~~  461 (565)
                      .|....++
T Consensus       313 ~l~~~~P~  320 (355)
T 3tjz_B          313 KVAMKHPS  320 (355)
T ss_dssp             --------
T ss_pred             HHHHHCcH
Confidence            88876653

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.0036  Score=64.02  Aligned_cols=62  Identities=21%  Similarity=0.274  Sum_probs=52.5

Q ss_pred             cccccccccccCCcee-cCCCcc--cchHHHHHHHh-cCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 008437           72 ELRCPISLQLMYDPVI-IASGQT--YERICIEKWLS-DGHSTCPKTQQKLPHLCLTPNYCVKGLIA  133 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~-~~~g~t--y~r~~I~~~~~-~~~~~cP~t~~~l~~~~l~pn~~l~~~i~  133 (565)
                      .+.|||++..|..||- ..|.|.  ||...+..... .+...||+|++.+...+|+.+.-+.+++.
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~  314 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ  314 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred             eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence            4899999999999995 569987  99888877654 45788999999999999999988877764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=96.02  E-value=0.0045  Score=50.98  Aligned_cols=46  Identities=13%  Similarity=0.158  Sum_probs=38.4

Q ss_pred             cccccccccCCce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           74 RCPISLQLMYDPV-IIASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        74 ~CpI~~~~m~dPV-~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      .|++|.-.+..=. ++||+|.||-.|+..|..++..+||.|+.++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            4888877555444 789999999999999998888999999988764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.091  Score=51.68  Aligned_cols=184  Identities=17%  Similarity=0.209  Sum_probs=112.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCccc--hhh-hhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc-
Q 008437          221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEA--RVF-TGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN-  295 (565)
Q Consensus       221 ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~--r~~-i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~-  295 (565)
                      |-..|.+. +|..|.+|++.|..+.......  ... +.. ...++.+-..+.+    .+..++..|+.+|..++..-. 
T Consensus        14 l~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D----sN~~v~~~al~~l~~~~~~~~~   88 (278)
T 4ffb_C           14 LEERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD----SNVVAQEQAIVALNSLIDAFAS   88 (278)
T ss_dssp             HHHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC----SSHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhhh
Confidence            55788887 9999999999999887543211  111 111 2234455566655    688999999999888763211 


Q ss_pred             ---hhhH-HHHhcCchHHHHHH-hcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437          296 ---RNKE-LMLAAGVIPLLEKM-ISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA  368 (565)
Q Consensus       296 ---~nk~-~i~~~G~i~~Lv~l-L~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a  368 (565)
                         .... ...-..+++.|+.= |.++.  .+..|..++..+.......     ...++.++..+.+. ++.++..++..
T Consensus        89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~K-npkv~~~~l~~  162 (278)
T 4ffb_C           89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKK-LPKLIAAAANC  162 (278)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCS-CHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhcc-CHHHHHHHHHH
Confidence               1111 11123457777654 55543  3455666665553221111     12356677778888 89999999999


Q ss_pred             HHHhccCC--C--ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC
Q 008437          369 LYNLSTIP--S--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS  416 (565)
Q Consensus       369 L~nLs~~~--~--nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~  416 (565)
                      |..+...-  .  +-...+ ..+++.+..++.+.++.+++.|..++..|-..
T Consensus       163 l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          163 VYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            98875321  1  111111 12455566677889999999999999887663

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=95.79  E-value=1.2  Score=41.22  Aligned_cols=212  Identities=15%  Similarity=0.140  Sum_probs=136.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHH-HHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYA-QEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~-q~~A~~aL~nLa~~~  294 (565)
                      +.+..++..|... -|.+|.+|+..|..+++.-++...-+     +..|+.+|+..   +...+ |+. +.++..++.-+
T Consensus        32 ~~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ks---EaIpltqeI-a~a~G~la~i~  101 (253)
T 2db0_A           32 SVLKKLIELLDDD-LWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKS---EAIPLTQEI-AKAFGQMAKEK  101 (253)
T ss_dssp             HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHC---CSHHHHHHH-HHHHHHHHHHC
T ss_pred             HHHHHHHHHhccH-HHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhc---ccCchHHHH-HHHHhHHHHhC
Confidence            4566778888776 79999999999999998777655443     44556666531   34444 444 46787777543


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      ++...     +.+|.|..-+.-++.  +.+...+|..++..  |-..+  .+++.-+..||.+. +..-+-.|+..|.  
T Consensus       102 Pe~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIara--nP~l~--~~v~rdi~smltsk-d~~Dkl~aLnFi~--  169 (253)
T 2db0_A          102 PELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKA--NPMLM--ASIVRDFMSMLSSK-NREDKLTALNFIE--  169 (253)
T ss_dssp             HHHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH--CHHHH--HHHHHHHHHHTSCS-SHHHHHHHHHHHH--
T ss_pred             HHHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHh--ChHHH--HHHHHHHHHHhcCC-ChHHHHHHHHHHH--
Confidence            32221     346666666666654  34555566555422  11111  24667888888877 6555555555444  


Q ss_pred             ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437          373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL  452 (565)
Q Consensus       373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L  452 (565)
                       .-.+|..+-+. -.+|.|+.||.+.+..++..+..+|.+|+.....-..+      |...++-+++.|..++......|
T Consensus       170 -alGen~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL  241 (253)
T 2db0_A          170 -AMGENSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGI  241 (253)
T ss_dssp             -TCCTTTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred             -HHhccCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHH
Confidence             44555555543 36889999999999999999999999999854333222      23345556777888888887777


Q ss_pred             HHhhc
Q 008437          453 FLLCN  457 (565)
Q Consensus       453 ~~Lc~  457 (565)
                      ..|..
T Consensus       242 ~rl~l  246 (253)
T 2db0_A          242 SRLLL  246 (253)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=95.57  E-value=0.0024  Score=64.39  Aligned_cols=47  Identities=30%  Similarity=0.675  Sum_probs=37.6

Q ss_pred             cccccccccccCC----cee----cCCCcccchHHHHHHHhcCC----------CCCCCCCCCCC
Q 008437           72 ELRCPISLQLMYD----PVI----IASGQTYERICIEKWLSDGH----------STCPKTQQKLP  118 (565)
Q Consensus        72 ~f~CpI~~~~m~d----PV~----~~~g~ty~r~~I~~~~~~~~----------~~cP~t~~~l~  118 (565)
                      ...|+||...+.+    |-.    ..|||.|-..||.+||....          .+||.|+++++
T Consensus       308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            4569999999887    543    36999999999999997421          46999998875

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=95.43  E-value=0.012  Score=59.97  Aligned_cols=63  Identities=13%  Similarity=0.194  Sum_probs=53.4

Q ss_pred             cccccccccccCCcee-cCCCcc--cchHHHHHHHh-cCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 008437           72 ELRCPISLQLMYDPVI-IASGQT--YERICIEKWLS-DGHSTCPKTQQKLPHLCLTPNYCVKGLIAS  134 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~-~~~g~t--y~r~~I~~~~~-~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~  134 (565)
                      .+.|||++..|+.||- ..|.|.  ||...+..... .+...||+|++.+...+|+.+.-+.+.+..
T Consensus       215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND  281 (360)
T ss_dssp             ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred             eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence            4799999999999995 569987  99998887765 456889999999998899999888887753

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=95.23  E-value=2.7  Score=44.49  Aligned_cols=237  Identities=13%  Similarity=0.095  Sum_probs=141.5

Q ss_pred             ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc--hhhHHH-HhcC-chHHHHH-HhcCCcH-HHHHHHHH-HH
Q 008437          257 ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN--RNKELM-LAAG-VIPLLEK-MISNSNS-HGAATALY-LN  329 (565)
Q Consensus       257 ~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~--~nk~~i-~~~G-~i~~Lv~-lL~s~~~-~~~A~aaL-~n  329 (565)
                      ...++..++.+|...   .+.++.+..+..+.-|...++  +.+..+ .+.. ....+.. ++..++. ...++..+ ..
T Consensus        75 ~~~~~~~~l~lL~~~---~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~l  151 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTS---DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSL  151 (480)
T ss_dssp             SSTTHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHH
Confidence            355778899999863   456676777666666654332  023233 2222 2222222 2222222 12233333 23


Q ss_pred             hcCCCCCchhhccCCchHH------HHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcC--chHHHhhccC-----
Q 008437          330 LSFLDDAKPIIGSSHAVPF------LVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAG--IISGLQSLAV-----  396 (565)
Q Consensus       330 Ls~~~~~k~~I~~~g~i~~------Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G--~v~~Lv~Ll~-----  396 (565)
                      ++.. ..+    ....++.      ++..|....+...+-.++.+|..|...++.|..+.+++  .++.++.++.     
T Consensus       152 l~~~-~~~----~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~  226 (480)
T 1ho8_A          152 LVQN-GLH----NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDS  226 (480)
T ss_dssp             HTST-TTC----CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred             Hhcc-CCc----cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence            3321 111    1223333      34445543234556678999999999999999988753  4666654321     


Q ss_pred             ----------CC--ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCH--HHHHHHhhc-CCHHHHHHHHHHHHHhhcCCh-
Q 008437          397 ----------PG--DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLV--SGLATVLDT-GELIEQEQAVSCLFLLCNGNE-  460 (565)
Q Consensus       397 ----------~~--~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v--~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~-  460 (565)
                                .+  ...++..++-+++.|+..++....+... +.+  ..|+.+++. .-+++..-++++|.|+...+. 
T Consensus       227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~  305 (480)
T 1ho8_A          227 QLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK  305 (480)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred             ccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence                      11  2456788999999999999888888764 433  566677765 468889999999999998662 


Q ss_pred             ---HH-HHHHHhCCcHHHHHHhhhc--CChhHHHHHHHHHHHHHhhcc
Q 008437          461 ---KC-CQMVLQEGVIPALVSISVN--GSTRGRDKAQRLLMLFREQRQ  502 (565)
Q Consensus       461 ---~~-~~~v~~~G~v~~Lv~L~~~--~s~~~k~~A~~lL~~L~~~r~  502 (565)
                         .. .++++..++++.|-.|...  .++...+--..+...|.+.-+
T Consensus       306 ~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~  353 (480)
T 1ho8_A          306 QHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQ  353 (480)
T ss_dssp             THHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence               22 2344455566655555554  588888888888888886644

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.70  E-value=0.12  Score=51.84  Aligned_cols=147  Identities=17%  Similarity=0.129  Sum_probs=98.6

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH--cCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc---cHHH
Q 008437          348 FLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA---GKEE  422 (565)
Q Consensus       348 ~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~--~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~---~r~~  422 (565)
                      .+...+.....+..+.-++++|+|+-.+...+..+..  .-+++.+..++...+..++-.++.++.|++....   ..+.
T Consensus       151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~  230 (304)
T 3ebb_A          151 HLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG  230 (304)
T ss_dssp             HHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence            3334444333566788899999999988887777765  2355555555555688888999999999987311   1111


Q ss_pred             HhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc-CChhHHHHHHHHHHHH
Q 008437          423 MNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLF  497 (565)
Q Consensus       423 i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L  497 (565)
                      ..   .++..+..++.. .+.+..-.++.+|.+|...+.+..+.+..-|+...+-.+... ...++.++|+.+|..|
T Consensus       231 ~~---~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l  304 (304)
T 3ebb_A          231 KA---QCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL  304 (304)
T ss_dssp             HH---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred             HH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence            11   134445555543 578888899999999998777666666666665555444443 5788999999888653

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=94.39  E-value=1.1  Score=43.38  Aligned_cols=172  Identities=15%  Similarity=0.143  Sum_probs=124.1

Q ss_pred             HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCC----CHHHHHHHHHHHHHhccCC--CChHHHHHcCchHHHhhc
Q 008437          321 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT----EHQCKLDALHALYNLSTIP--SNIPNLLSAGIISGLQSL  394 (565)
Q Consensus       321 ~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~----~~~~~~~Al~aL~nLs~~~--~nk~~iv~~G~v~~Lv~L  394 (565)
                      .+|.+.|..++.+++.|..+..+...-.|.-.|....    -+-.+-.+++++..|...+  +....+.+.++||..+++
T Consensus        74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri  153 (268)
T 2fv2_A           74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI  153 (268)
T ss_dssp             HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence            5588888899999999999988887766666666541    2347889999999998644  356667789999999999


Q ss_pred             cCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCC-------CHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 008437          395 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPG-------LVSGLATVL-DTGELIEQEQAVSCLFLLCNGNEKCCQMV  466 (565)
Q Consensus       395 l~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g-------~v~~Lv~lL-~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v  466 (565)
                      ++.|+...+..|.-++..+-.++.|-.-+..+..       ++..+|.-+ ...+++.-.+.+++-..|+.+.. .+.++
T Consensus       154 me~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r-ar~aL  232 (268)
T 2fv2_A          154 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR-AREAL  232 (268)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH-HHHHH
T ss_pred             HhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH-HHHHH
Confidence            9889988889999999998888877776654432       233333322 34789999999999999998765 34443


Q ss_pred             Hh-------CCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437          467 LQ-------EGVIPALVSISVNGSTRGRDKAQRLLMLF  497 (565)
Q Consensus       467 ~~-------~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L  497 (565)
                      .+       .|.+..++    .+++.+|+.-..+|.++
T Consensus       233 ~~~LP~~Lrd~tf~~~l----~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          233 RQCLPDQLKDTTFAQVL----KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HHHSCGGGTSSTTHHHH----TSCHHHHHHHHHHHHHS
T ss_pred             HHhCcHHhhChHHHHHH----hcCHHHHHHHHHHHHhc
Confidence            32       13333222    36777777766666554

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=94.23  E-value=0.3  Score=47.41  Aligned_cols=230  Identities=13%  Similarity=0.121  Sum_probs=145.5

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhh-hccCCHHHHHHHhcccc---cCC--C--HH-HHHHHHHH
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFT-GANGFVVALLRFLESAV---CER--N--SY-AQEIGAMA  286 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i-~~~G~i~~Lv~lL~s~~---~s~--~--~~-~q~~A~~a  286 (565)
                      +.+..++..|.   +++.|..|+.+|..--..-++.--.+ ...|.+..|++=+-+-.   ..+  .  .. -..+|+..
T Consensus         3 ~~i~qli~~L~---~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaL   79 (268)
T 2fv2_A            3 EKIYQWINELS---SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALAL   79 (268)
T ss_dssp             HHHHHHHHHTS---STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc---CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHH
Confidence            35566777775   44567777666655322222222222 24788877765332110   001  1  11 22555666


Q ss_pred             HHHhhccCchhhHHHHhcCchHHHHHHhcCCc---H----HHHHHHHHHHhcCCCCCchhh---ccCCchHHHHHHhcCC
Q 008437          287 LFNLAVNNNRNKELMLAAGVIPLLEKMISNSN---S----HGAATALYLNLSFLDDAKPII---GSSHAVPFLVELCKGK  356 (565)
Q Consensus       287 L~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~---~----~~~A~aaL~nLs~~~~~k~~I---~~~g~i~~Lv~lL~~~  356 (565)
                      |.-+| ++++.|..+.++...--|-.+|...+   .    +-.+.+++..|...++ .+.|   .+.+.||..++.++.|
T Consensus        80 lQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd-~eVi~fLL~tEiiplCLrime~G  157 (268)
T 2fv2_A           80 LQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDE-QEVINFLLTTEIIPLCLRIMESG  157 (268)
T ss_dssp             HHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCC-HHHHHHHHHTTHHHHHHHHHHHS
T ss_pred             HHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCc-HHHHHHHHhhhHHHHHHHHHhhc
Confidence            67777 47899999999998888888887652   1    2337888888876644 2333   3578999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccCCCChHHHHH--------cCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcC-
Q 008437          357 TEHQCKLDALHALYNLSTIPSNIPNLLS--------AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-  426 (565)
Q Consensus       357 ~~~~~~~~Al~aL~nLs~~~~nk~~iv~--------~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~-  426 (565)
                       +.-.+.-|.-++..+-.++.....+..        ..++..++. +..+.++.+.+..+.+-..|+.++.+|+++... 
T Consensus       158 -selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L  236 (268)
T 2fv2_A          158 -SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL  236 (268)
T ss_dssp             -CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred             -cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence             888899999888887665543333221        234555555 667788999999999999999999999887532 


Q ss_pred             -----CCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008437          427 -----PGLVSGLATVLDTGELIEQEQAVSCLFLL  455 (565)
Q Consensus       427 -----~g~v~~Lv~lL~~~s~~~~e~Av~~L~~L  455 (565)
                           +|...   .++ .+++..+..-...|.|+
T Consensus       237 P~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          237 PDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             CGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred             cHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence                 12211   122 35666666655555554

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.22  E-value=0.016  Score=48.16  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             Cccccccccc-ccCCcee--cCCCcccchHHHHHHHh
Q 008437           71 EELRCPISLQ-LMYDPVI--IASGQTYERICIEKWLS  104 (565)
Q Consensus        71 ~~f~CpI~~~-~m~dPV~--~~~g~ty~r~~I~~~~~  104 (565)
                      +++.|+||.+ .+.+||.  +.|||+||+.|++.|..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            4678999996 5899998  89999999999998543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=93.07  E-value=0.38  Score=47.13  Aligned_cols=149  Identities=12%  Similarity=0.108  Sum_probs=98.7

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC----ChHH--HHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCc
Q 008437          345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPS----NIPN--LLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASA  417 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~----nk~~--iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~  417 (565)
                      .++.+-+.+.+. +..+...++.+|..++..-.    .+..  ..-..+++.|++ .+.+....++..++.+|..++...
T Consensus        56 ~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~  134 (278)
T 4ffb_C           56 DPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD  134 (278)
T ss_dssp             CTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc
Confidence            445666777766 89999999999998874321    2222  223567888887 677788888888988888776533


Q ss_pred             ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcC-ChHH--HHHHHhCCcHHHHHHhhhcCChhHHHHHHHHH
Q 008437          418 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKC--CQMVLQEGVIPALVSISVNGSTRGRDKAQRLL  494 (565)
Q Consensus       418 ~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~--~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL  494 (565)
                      .....      ++..|+..+...++.++..++..|..+... +...  ....+ ..+++.|..++.+.++.+|+.|..++
T Consensus       135 ~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~  207 (278)
T 4ffb_C          135 TSITQ------SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLI  207 (278)
T ss_dssp             SSSHH------HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred             CcHHH------HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            21111      234455566778999999999998876532 1110  11111 12445567788899999999999998


Q ss_pred             HHHHhhc
Q 008437          495 MLFREQR  501 (565)
Q Consensus       495 ~~L~~~r  501 (565)
                      -.+-.+-
T Consensus       208 ~~ly~~~  214 (278)
T 4ffb_C          208 VEIYKVT  214 (278)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHHh
Confidence            8776543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=92.57  E-value=1  Score=45.03  Aligned_cols=190  Identities=17%  Similarity=0.130  Sum_probs=107.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHH-HhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLR-FLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      .+..+.+.++ = +.+.+.-++..+|.++. ++.....+.+.+.-..++. ++..-.....+..+..++++|.|+-. +.
T Consensus       104 ~l~~l~kil~-W-P~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~  179 (304)
T 3ebb_A          104 QLQILWKAIN-C-PEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQ  179 (304)
T ss_dssp             HHHHHHHHHT-S-CTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SH
T ss_pred             HHHHHHHHHc-C-CHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-Cc
Confidence            3445555553 2 45677788888888774 4444444544332233332 22211112456678999999999964 56


Q ss_pred             hhhHHHHhc--CchHHHHHHhcCCc--HHHHHHHHHHHhcCCCC-CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437          296 RNKELMLAA--GVIPLLEKMISNSN--SHGAATALYLNLSFLDD-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY  370 (565)
Q Consensus       296 ~nk~~i~~~--G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~-~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~  370 (565)
                      ..+..+...  .+++.+...+.+.+  .+..++.+++|++.... .+..=.....+..+..+++...+.++.-.++.||.
T Consensus       180 ~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALG  259 (304)
T 3ebb_A          180 AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALG  259 (304)
T ss_dssp             HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            677777653  24555555444333  34557778889886411 11100112245566667766558899999999999


Q ss_pred             HhccCCCChHHHHHc-CchHHHhhccCC-CChHHHHHHHHHH
Q 008437          371 NLSTIPSNIPNLLSA-GIISGLQSLAVP-GDPMWTEKSLAVL  410 (565)
Q Consensus       371 nLs~~~~nk~~iv~~-G~v~~Lv~Ll~~-~~~~~~e~al~~L  410 (565)
                      +|...+.....+.+. |+...+-.+... ....+.+.|-.+|
T Consensus       260 tL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~  301 (304)
T 3ebb_A          260 TLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL  301 (304)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred             HHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            999766555555553 444433335443 3445545444333

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=92.09  E-value=0.28  Score=52.83  Aligned_cols=164  Identities=13%  Similarity=0.145  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      ..+..++..+... .|++|-.++-.|+-+       ...+.+ .++++.++.-|.+    .|..++..|+.+|..++.  
T Consensus       263 ~IL~qLV~~l~~~-~WEVRHGGLLGLKYL-------~DLL~~Ld~Vv~aVL~GL~D----~DDDVRAVAAetLiPIA~--  328 (800)
T 3oc3_A          263 DIIEQLVGFLDSG-DWQVQFSGLIALGYL-------KEFVEDKDGLCRKLVSLLSS----PDEDIKLLSAELLCHFPI--  328 (800)
T ss_dssp             CHHHHHTTGGGCS-CHHHHHHHHHHHHHT-------GGGCCCHHHHHHHHHHHTTC----SSHHHHHHHHHHHTTSCC--
T ss_pred             HHHHHHHhhcCCC-CeeehhhhHHHHHHH-------HHHHHHHHHHHHHHHhhcCC----cccHHHHHHHHHhhhhcc--
Confidence            3445555555555 899999999999998       122222 5667777777766    688999999999999871  


Q ss_pred             chhhHHHHhcCchHHHHHHhcCC----cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNS----NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY  370 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~----~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~  370 (565)
                      .+...     .++..|...|..-    .+....+.+|..|...+..  +-.....+|.|...|++. -..++..++.+|.
T Consensus       329 p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~  400 (800)
T 3oc3_A          329 TDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP-VPEVRTSILNMVK  400 (800)
T ss_dssp             SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTT
T ss_pred             hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC-cHHHHHHHHHHHH
Confidence            21111     2344555555432    2234444444444333321  112247889999999998 7899999999998


Q ss_pred             HhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHH
Q 008437          371 NLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLL  411 (565)
Q Consensus       371 nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~  411 (565)
                      .+.          ...++..+.+ ++-+.+..+.+.+..+..
T Consensus       401 tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          401 NLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             TCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            887          2235566666 666677888888887774

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=92.00  E-value=3.2  Score=41.84  Aligned_cols=241  Identities=14%  Similarity=0.060  Sum_probs=154.6

Q ss_pred             hhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHH---hc--CchHHHHHHhcCCcHHHHHHHHHHH
Q 008437          255 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELML---AA--GVIPLLEKMISNSNSHGAATALYLN  329 (565)
Q Consensus       255 i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~---~~--G~i~~Lv~lL~s~~~~~~A~aaL~n  329 (565)
                      +...+.+..|+..|..    -+-+.+..+..+..++-......+-..+   ..  .++..|+.-...++..-.+-..|..
T Consensus        74 i~~~dll~~Li~~l~~----L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRe  149 (341)
T 1upk_A           74 LYNSGLLSTLVADLQL----IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHSHHHHHHHTGGG----SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHhccc----CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHH
Confidence            4556788888888876    6788999998888887654333332222   11  2333333333334433444555666


Q ss_pred             hcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHc---CchHHHhhccCCCChHHHHH
Q 008437          330 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSA---GIISGLQSLAVPGDPMWTEK  405 (565)
Q Consensus       330 Ls~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~---G~v~~Lv~Ll~~~~~~~~e~  405 (565)
                      ...++.....|-.++.+..+++.++.+ +-++..+|..++..|-..+ ......+..   -.....-.|+.+++-.++..
T Consensus       150 cir~e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ  228 (341)
T 1upk_A          150 CIRHEPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  228 (341)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHHhHHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence            666666556666677788899999988 8999999999999886543 233333332   23445555888999999999


Q ss_pred             HHHHHHHHhcCcccHHHH---hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC---hHHHHHHHhC--CcHHHHHH
Q 008437          406 SLAVLLNLAASAAGKEEM---NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN---EKCCQMVLQE--GVIPALVS  477 (565)
Q Consensus       406 al~~L~nLa~~~~~r~~i---~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~---~~~~~~v~~~--G~v~~Lv~  477 (565)
                      ++.+|..|-....+...|   +..+.-+..++.+|++.+..+|-.|..+.--...++   ......+...  ..+.-|-.
T Consensus       229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~  308 (341)
T 1upk_A          229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSK  308 (341)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHh
Confidence            999999999988887766   455566788888899999999999998875544433   2333333322  33444444


Q ss_pred             hhhcC--ChhHHHHHHHHHHHHHhh
Q 008437          478 ISVNG--STRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       478 L~~~~--s~~~k~~A~~lL~~L~~~  500 (565)
                      +..+.  ++.-.+-=.-+++.+...
T Consensus       309 f~~d~~eDeqF~dEK~~lI~~I~~L  333 (341)
T 1upk_A          309 FQNDRTEDEQFNDEKTYLVKQIRDL  333 (341)
T ss_dssp             TTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHhC
Confidence            44332  233333333455555544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=90.74  E-value=3.8  Score=39.06  Aligned_cols=180  Identities=19%  Similarity=0.121  Sum_probs=103.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-chhhhhccCCHHHHHHHhccccc-------CCCHHHHHHHHHHHHHhh
Q 008437          220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVC-------ERNSYAQEIGAMALFNLA  291 (565)
Q Consensus       220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~-------s~~~~~q~~A~~aL~nLa  291 (565)
                      .+++.|.+....+.-.+-+..|+...+.++- .-..+ ..||+..|+.+|.....       ..+...+...+.+|..+.
T Consensus         4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm   82 (233)
T 2f31_A            4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   82 (233)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence            3566666553333323456666665555443 22334 47889999998864321       124567788889999886


Q ss_pred             ccCchhhHHHHh-cCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--C-chhh----------ccCCchHHHHHHhcC
Q 008437          292 VNNNRNKELMLA-AGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--A-KPII----------GSSHAVPFLVELCKG  355 (565)
Q Consensus       292 ~~~~~nk~~i~~-~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~-k~~I----------~~~g~i~~Lv~lL~~  355 (565)
                       .+......+++ .+++..|+..|.+...  +..++.+|..++..++  + ...+          .+..-...+++.|++
T Consensus        83 -n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  161 (233)
T 2f31_A           83 -NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  161 (233)
T ss_dssp             -SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred             -CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Confidence             34444454554 5789999999887654  4456666666655433  3 2222          233466788888886


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCC-------hHHHHHcCchHHHhhccCCCChH
Q 008437          356 KTEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPM  401 (565)
Q Consensus       356 ~~~~~~~~~Al~aL~nLs~~~~n-------k~~iv~~G~v~~Lv~Ll~~~~~~  401 (565)
                      ..+.+.+..++..|-.|....++       |..+...|..+.|-.+-...++.
T Consensus       162 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~  214 (233)
T 2f31_A          162 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENED  214 (233)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHH
T ss_pred             CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHH
Confidence            53666666555555555554442       33344566666555453333443

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=90.59  E-value=3.2  Score=48.00  Aligned_cols=254  Identities=11%  Similarity=0.114  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc------cCCCHHHHHHHHHHHHHhhccCchhhHHHHhc-
Q 008437          232 GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV------CERNSYAQEIGAMALFNLAVNNNRNKELMLAA-  304 (565)
Q Consensus       232 ~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~------~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~-  304 (565)
                      ..|..|...|..++....   ..     .++.++.++....      .+.+-..++.|+.++..++.... ....-+.. 
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~-----v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~-~~~~~~~~~  446 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VL-----VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN-ITNAGVSST  446 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HH-----HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC-CBTTBCCCB
T ss_pred             CcHHHHHHHHHHHHHHcc---hh-----HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc-cccCCcccc
Confidence            456677777877775432   11     2444444432111      12456778889999999874211 01100000 


Q ss_pred             ----CchHHHH----HHhcCC---cH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437          305 ----GVIPLLE----KMISNS---NS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN  371 (565)
Q Consensus       305 ----G~i~~Lv----~lL~s~---~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n  371 (565)
                          ...+.++    ..|.++   ..  +..|++++..++..- .+..  -...++.+++.|.+. +..++..|+.||.+
T Consensus       447 ~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~  522 (960)
T 1wa5_C          447 NNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTD-EYVVYTYAAITIEK  522 (960)
T ss_dssp             CTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCC-ChhHHHHHHHHHHH
Confidence                2223332    334443   32  455788887776531 1111  135678888888877 89999999999999


Q ss_pred             hccCCC---------ChHHHHH--cCchHHHhhccCCCC---hH--HHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHH
Q 008437          372 LSTIPS---------NIPNLLS--AGIISGLQSLAVPGD---PM--WTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLA  434 (565)
Q Consensus       372 Ls~~~~---------nk~~iv~--~G~v~~Lv~Ll~~~~---~~--~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv  434 (565)
                      ++...+         .+..+..  ..+++.|+.++....   ..  ..+.++.+|..++..- +.-.....  ..++.|+
T Consensus       523 ~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~  600 (960)
T 1wa5_C          523 ILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFI  600 (960)
T ss_dssp             HTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHH
T ss_pred             HHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHH
Confidence            986421         2332321  235555555554431   01  1245555555544311 11111111  2334444


Q ss_pred             HHhhc-----CCHHHHHHHHHHHHHhhcC-ChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437          435 TVLDT-----GELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       435 ~lL~~-----~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      .++..     .++.....++.+|..++.. +++.. .-....++|.+..++.+......+.+..++..+-+..
T Consensus       601 ~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          601 EIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence            44432     3556677788888887775 33222 2334567788888777776677888888888877665

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=89.72  E-value=17  Score=41.89  Aligned_cols=218  Identities=9%  Similarity=0.036  Sum_probs=121.8

Q ss_pred             CHHHHHHHHHHHHHHhccCccchhhhh---c-cCCHHHHHH----HhcccccCCCHHHHHHHHHHHHHhhccCchhhHHH
Q 008437          230 NLGQKCNIVEQIRLLLKDDEEARVFTG---A-NGFVVALLR----FLESAVCERNSYAQEIGAMALFNLAVNNNRNKELM  301 (565)
Q Consensus       230 ~~~~q~~Al~~L~~La~~~~~~r~~i~---~-~G~i~~Lv~----lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i  301 (565)
                      +|..+..|+..+..++........-+.   . ....+.|+.    .|.+.. ..++.++..|+++|..++..-  .... 
T Consensus       418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~-~~~p~vr~~a~~~lg~~~~~~--~~~~-  493 (960)
T 1wa5_C          418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN-IPHIILRVDAIKYIYTFRNQL--TKAQ-  493 (960)
T ss_dssp             CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSS-CSCHHHHHHHHHHHHHTGGGS--CHHH-
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCC-CCCceehHHHHHHHHHHHhhC--CHHH-
Confidence            788999999999999854321111010   0 133343333    333311 127889999999999997421  2221 


Q ss_pred             HhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC---------Cchhhcc--CCchHHHHHHhcCCC-C-HH--HHHH
Q 008437          302 LAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD---------AKPIIGS--SHAVPFLVELCKGKT-E-HQ--CKLD  364 (565)
Q Consensus       302 ~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~---------~k~~I~~--~g~i~~Lv~lL~~~~-~-~~--~~~~  364 (565)
                       -..+++.++..|.+.+.  +..|+.+|.++....+         .+..+..  ...++.|+.++.... . ..  ..+.
T Consensus       494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~  572 (960)
T 1wa5_C          494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF  572 (960)
T ss_dssp             -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred             -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence             23467888888876653  5668999999876421         2344432  246667777777641 0 11  2245


Q ss_pred             HHHHHHHhcc--CCCChHHHHHcCchHHHhhcc----CC-CChHHHHHHHHHHHHHhcC--cccHHHHhcCCCCHHHHHH
Q 008437          365 ALHALYNLST--IPSNIPNLLSAGIISGLQSLA----VP-GDPMWTEKSLAVLLNLAAS--AAGKEEMNSTPGLVSGLAT  435 (565)
Q Consensus       365 Al~aL~nLs~--~~~nk~~iv~~G~v~~Lv~Ll----~~-~~~~~~e~al~~L~nLa~~--~~~r~~i~~~~g~v~~Lv~  435 (565)
                      ++.+|..++.  .++....+.  .+++.|+.++    ++ .++.....++.+|..++..  ++....+..  ..++.+..
T Consensus       573 l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~  648 (960)
T 1wa5_C          573 LMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--SMMPTFLT  648 (960)
T ss_dssp             HHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHH
Confidence            5566655542  122222211  2445555422    22 4566666677777777764  334444443  46777777


Q ss_pred             HhhcCCHHHHHHHHHHHHHhh
Q 008437          436 VLDTGELIEQEQAVSCLFLLC  456 (565)
Q Consensus       436 lL~~~s~~~~e~Av~~L~~Lc  456 (565)
                      +|........+.+..++..+.
T Consensus       649 iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          649 VFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHhhhHhhHHHHHHHHHHHH
Confidence            787655556666666655544

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=89.16  E-value=2.7  Score=41.07  Aligned_cols=179  Identities=13%  Similarity=0.090  Sum_probs=111.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc--Cchh
Q 008437          220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN--NNRN  297 (565)
Q Consensus       220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~--~~~n  297 (565)
                      .+...|-+. +...+.+|+..|......++  ...+..   +..|++.+.-...+.+..+...++.+|..+...  ..+.
T Consensus        50 ~~~~~lfs~-d~k~~~~ale~L~~~l~~~~--~~~~~~---lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           50 SLMSQLFHK-DFKQHLAALDSLVRLADTSP--RSLLSN---SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHTCS-CHHHHHHHHHHHHHHHHHCH--HHHHHT---HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHhhhCh--HHHHHH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            556667666 89999999999988775433  222222   223344332111125788888888777765311  1111


Q ss_pred             hHHHHhc-CchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437          298 KELMLAA-GVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST  374 (565)
Q Consensus       298 k~~i~~~-G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~  374 (565)
                      +..-.+. -.+|.|+.-|..+.  .++.+-.++..+..      ...-...++.|++-+++. +...+..++..|..+-.
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~------v~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD------VVGPLKMTPMLLDALKSK-NARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH------HHCHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence            1111122 25788888775543  34555555554431      112234678888888888 89999999999888864


Q ss_pred             CCCChHHHHHcCch---HHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437          375 IPSNIPNLLSAGII---SGLQSLAVPGDPMWTEKSLAVLLNLAA  415 (565)
Q Consensus       375 ~~~nk~~iv~~G~v---~~Lv~Ll~~~~~~~~e~al~~L~nLa~  415 (565)
                      .....    ...++   +.+..++.+.+..+++.|+.++..+-.
T Consensus       197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            33222    23467   889999999999999999999886554

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=88.73  E-value=1.8  Score=44.71  Aligned_cols=100  Identities=16%  Similarity=0.042  Sum_probs=73.0

Q ss_pred             ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HH-HHHHHh--------
Q 008437          399 DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KC-CQMVLQ--------  468 (565)
Q Consensus       399 ~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~-~~~v~~--------  468 (565)
                      +......++.+|..|.....|...++.++.+|..|+..|.+..+.++..|+.+|..+|..+. +. ...|++        
T Consensus       133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~  212 (383)
T 3eg5_B          133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  212 (383)
T ss_dssp             CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence            44667889999999999999999999999999999999999999999999999999998653 11 222322        


Q ss_pred             --CCcHHHHHHhhhc-CChhHHHHHHHHHHHHH
Q 008437          469 --EGVIPALVSISVN-GSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       469 --~G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L~  498 (565)
                        ..-+..|+..+.+ .+...+..+..++..+-
T Consensus       213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li  245 (383)
T 3eg5_B          213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALI  245 (383)
T ss_dssp             HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence              2446667765555 34444444444444443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=88.60  E-value=8.2  Score=39.73  Aligned_cols=182  Identities=19%  Similarity=0.120  Sum_probs=109.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-chhhhhccCCHHHHHHHhcccc-------cCCCHHHHHHHHHHHHHh
Q 008437          219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFNL  290 (565)
Q Consensus       219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~-------~s~~~~~q~~A~~aL~nL  290 (565)
                      ..++..|.+....+.-.+.+..|+...+..+- .-..++ .+|+..|+.+|..-.       ...+...+...+.+|..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            45677777653333334567777776655543 223444 778999999985321       123567888889999988


Q ss_pred             hccCchhhHHHHh-cCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--C-chh----------hccCCchHHHHHHhc
Q 008437          291 AVNNNRNKELMLA-AGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--A-KPI----------IGSSHAVPFLVELCK  354 (565)
Q Consensus       291 a~~~~~nk~~i~~-~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~-k~~----------I~~~g~i~~Lv~lL~  354 (565)
                      . .+......++. ..+|..|+..|.+...  +..|.-+|..++..++  + ...          .++..-...++..|+
T Consensus       148 m-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 M-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             T-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             h-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            6 34444455554 5789999999987653  4456666666655432  2 211          233456788999998


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCC-------hHHHHHcCchHHHhhccCCCChHH
Q 008437          355 GKTEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPMW  402 (565)
Q Consensus       355 ~~~~~~~~~~Al~aL~nLs~~~~n-------k~~iv~~G~v~~Lv~Ll~~~~~~~  402 (565)
                      ++.+.+.+..++..|-.|....++       |..+...|..+.+-.+-...++.+
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L  281 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  281 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhH
Confidence            754667666666555555554442       333445677776666533334443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=88.32  E-value=17  Score=41.57  Aligned_cols=138  Identities=10%  Similarity=0.066  Sum_probs=90.2

Q ss_pred             CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchH
Q 008437          229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP  308 (565)
Q Consensus       229 ~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~  308 (565)
                      .++..+..++..|..++..-..     .....++.++..|..- ..+++.++..++++|..++..-..+. ... ..+++
T Consensus       461 ~~w~~~eaal~al~~i~~~~~~-----~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~  532 (963)
T 2x19_B          461 YSWQHTEALLYGFQSIAETIDV-----NYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLP  532 (963)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCS-----SCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHH
T ss_pred             CchHHHHHHHHHHHHHHhhcCc-----hhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHH
Confidence            4889999999999999865332     1134566677666432 22467899999999998874211122 121 36788


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCC-CCHHHHHHHHHHHHHhccCC
Q 008437          309 LLEKMISNSNSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIP  376 (565)
Q Consensus       309 ~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~-~~~~~~~~Al~aL~nLs~~~  376 (565)
                      .|+..|..+..+..|+.++..++.  +.+..+.-  ...+..|..++..+ .+...+..+..++..++..-
T Consensus       533 ~l~~~l~~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          533 LVLHALGNPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence            888888775567778999988873  23333332  24455566666653 25678888889998887543

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=87.25  E-value=0.5  Score=45.64  Aligned_cols=48  Identities=21%  Similarity=0.456  Sum_probs=36.9

Q ss_pred             cccccccccccCCceec-CCCcccchHHHHHHHhc-CCCCCCCCCCCCCC
Q 008437           72 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPKTQQKLPH  119 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~~  119 (565)
                      -..|.||.++..-=+.= .||+.|-+.|+.+|+.. +...||.|+.+...
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            34699999877643322 28999999999999975 35789999987654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=87.21  E-value=6.6  Score=45.26  Aligned_cols=215  Identities=12%  Similarity=0.033  Sum_probs=121.0

Q ss_pred             CHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc-cCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchH
Q 008437          230 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-CERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP  308 (565)
Q Consensus       230 ~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~-~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~  308 (565)
                      +|..+..|+..|..++..-....     ...++.++.++..-. +..++.++..++++|..++..-..+...+  ..+++
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~  549 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN  549 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence            78889999999999975433211     234555655442211 11368899999999998874212222111  13566


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCC-CCHHHHHHHHHHHHHhccCC--CChHHHH
Q 008437          309 LLEKMISNSNSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIP--SNIPNLL  383 (565)
Q Consensus       309 ~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~-~~~~~~~~Al~aL~nLs~~~--~nk~~iv  383 (565)
                      .|+..|+ ...+..|+.++.+++.  +.+..+.-  ...+..|..++.++ .+...+..+..+|..++..-  +.+...+
T Consensus       550 ~l~~~l~-~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~  626 (971)
T 2x1g_F          550 LLVRGLN-SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL  626 (971)
T ss_dssp             HHHHHHH-SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             HHHHHhC-hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            7777774 5557788999988873  23344432  35666777778764 25678888888888886532  3333332


Q ss_pred             HcCchHHHhh----ccCCC--ChHHHHHHHHHHHHHhc---Ccc--------------cHHHHhcCCCCHHHHHHHhhc-
Q 008437          384 SAGIISGLQS----LAVPG--DPMWTEKSLAVLLNLAA---SAA--------------GKEEMNSTPGLVSGLATVLDT-  439 (565)
Q Consensus       384 ~~G~v~~Lv~----Ll~~~--~~~~~e~al~~L~nLa~---~~~--------------~r~~i~~~~g~v~~Lv~lL~~-  439 (565)
                      + ..+++++.    ++...  +..........|..|+.   .-.              ....+..  ..++.+..++.. 
T Consensus       627 ~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~  703 (971)
T 2x1g_F          627 D-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ--RTMPIFKRIAEMW  703 (971)
T ss_dssp             H-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHH--TTHHHHHHHHHHT
T ss_pred             H-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH--HHHHHHHHHHHhc
Confidence            2 23444444    22222  23233334444444432   100              1111222  467777777754 


Q ss_pred             -CCHHHHHHHHHHHHHhhc
Q 008437          440 -GELIEQEQAVSCLFLLCN  457 (565)
Q Consensus       440 -~s~~~~e~Av~~L~~Lc~  457 (565)
                       .++.+.+.++.++..++.
T Consensus       704 ~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          704 VEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHH
Confidence             377899999999988764

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=85.98  E-value=9.5  Score=38.42  Aligned_cols=195  Identities=11%  Similarity=0.012  Sum_probs=130.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc--cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      .+..|+..|..- +.+.|..+......+.+.....+...++  ..- +-++..|-.+.  +++++--.+-..|+... .+
T Consensus        79 ll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gY--e~~diAl~~G~mLReci-r~  153 (341)
T 1upk_A           79 LLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGY--ESPEIALNCGIMLRECI-RH  153 (341)
T ss_dssp             HHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGG--GSTTTHHHHHHHHHHHH-TS
T ss_pred             HHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhh--ccchhHhHHHHHHHHHH-Hh
Confidence            456677888877 8999999999999998766544432221  111 22333332222  12333333334455555 35


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHh-cCCCCCc-hhhcc--CCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNL-SFLDDAK-PIIGS--SHAVPFLVELCKGKTEHQCKLDALHA  368 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nL-s~~~~~k-~~I~~--~g~i~~Lv~lL~~~~~~~~~~~Al~a  368 (565)
                      +...+.|...+.+..+...+..+.-  ...|.+++..| ..+.... .-+..  ...+...-+||.++ +.-++..++..
T Consensus       154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKL  232 (341)
T 1upk_A          154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKL  232 (341)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHH
Confidence            6677777788888889998887754  34477777664 3332111 11111  23567777899999 99999999999


Q ss_pred             HHHhccCCCChHHHHH----cCchHHHhhccCCCChHHHHHHHHHHHHHhcCc
Q 008437          369 LYNLSTIPSNIPNLLS----AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA  417 (565)
Q Consensus       369 L~nLs~~~~nk~~iv~----~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~  417 (565)
                      |..|-.+..|...+..    ..-+..++.||++....++-.|..+......++
T Consensus       233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence            9999999988887765    356677777999999999999999998877654

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=85.85  E-value=16  Score=37.50  Aligned_cols=182  Identities=19%  Similarity=0.130  Sum_probs=105.2

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-chhhhhccCCHHHHHHHhccccc-------CCCHHHHHHHHHHHHHhh
Q 008437          220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVC-------ERNSYAQEIGAMALFNLA  291 (565)
Q Consensus       220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~-------s~~~~~q~~A~~aL~nLa  291 (565)
                      .+|+.|.+....+.-.+.+..|+...+.++- .-..|. .+|+..|+.+|.....       ..+...+...+.+|..+.
T Consensus         8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm   86 (386)
T 2bnx_A            8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   86 (386)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence            4567776652332223456666665555443 222333 6788899988864211       124567788889999886


Q ss_pred             ccCchhhHHHH-hcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--C-chhh----------ccCCchHHHHHHhcC
Q 008437          292 VNNNRNKELML-AAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--A-KPII----------GSSHAVPFLVELCKG  355 (565)
Q Consensus       292 ~~~~~nk~~i~-~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~-k~~I----------~~~g~i~~Lv~lL~~  355 (565)
                       .+......++ ..+++..|+..|.+...  +..++.+|..++..++  + ...+          .+..-...||+.|+.
T Consensus        87 -N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  165 (386)
T 2bnx_A           87 -NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  165 (386)
T ss_dssp             -SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             -CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence             3343444444 45789999999987644  3446656665655433  3 2111          233466789998886


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCC-------hHHHHHcCchHHHhhccCCCChHHH
Q 008437          356 KTEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPMWT  403 (565)
Q Consensus       356 ~~~~~~~~~Al~aL~nLs~~~~n-------k~~iv~~G~v~~Lv~Ll~~~~~~~~  403 (565)
                      ..+.+.+..++..|-.|....++       |..+...|..+.|-.+-...++.+.
T Consensus       166 ~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~  220 (386)
T 2bnx_A          166 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK  220 (386)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred             CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence            54666666555555555554442       3344556766666555444455443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=84.85  E-value=3.9  Score=43.17  Aligned_cols=118  Identities=17%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh
Q 008437          358 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL  437 (565)
Q Consensus       358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL  437 (565)
                      +...++-|+..|...-.+-...    +.-++..+++|..+.+..++..|+..|-.+|.. +....+      +..|+++|
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~l----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki------aDvL~QlL  109 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPEL----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV------ADILTQLL  109 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGGG----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH------HHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH------HHHHHHHH
Confidence            5666666666666554322211    122455677777777777777888888888876 444443      34577788


Q ss_pred             hcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHH
Q 008437          438 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL  494 (565)
Q Consensus       438 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL  494 (565)
                      .+.++......-.+|..|-..++.        |.+..|..-+.++++.+|+++..-|
T Consensus       110 qtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi  158 (507)
T 3u0r_A          110 QTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFL  158 (507)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHH
Confidence            777777777666677666665542        3344444444445666676654444

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=83.74  E-value=1.2  Score=43.09  Aligned_cols=44  Identities=16%  Similarity=0.076  Sum_probs=27.4

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHH
Q 008437          431 SGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL  493 (565)
Q Consensus       431 ~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~l  493 (565)
                      +.|..++.+.+..+++.++..|                 | .+.|..| .+.+..+++.|...
T Consensus       197 ~~L~~Ll~D~d~~VR~~aa~~l-----------------~-~~~L~~L-~D~~~~VR~aa~~~  240 (244)
T 1lrv_A          197 DDLLELLHDPDWTVRLAAVEHA-----------------S-LEALREL-DEPDPEVRLAIAGR  240 (244)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHS-----------------C-HHHHHHC-CCCCHHHHHHHHCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHcC-----------------C-HHHHHHc-cCCCHHHHHHHHHH
Confidence            3455555555666666555543                 2 4566667 78888888887654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=82.87  E-value=16  Score=35.57  Aligned_cols=103  Identities=12%  Similarity=0.070  Sum_probs=75.1

Q ss_pred             CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437          344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM  423 (565)
Q Consensus       344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i  423 (565)
                      -.+|.|+.-|.+. ...+++.+-.+|..|+..      .--..+++.+++-+++.+...++.++..|..+-..... .  
T Consensus       132 ~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~-~--  201 (266)
T 2of3_A          132 AFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI-S--  201 (266)
T ss_dssp             HHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS-G--
T ss_pred             HHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC-C--
Confidence            4679999888777 677888777777666531      01123556666755777889999999998888663322 1  


Q ss_pred             hcCCCCH---HHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 008437          424 NSTPGLV---SGLATVLDTGELIEQEQAVSCLFLLCNG  458 (565)
Q Consensus       424 ~~~~g~v---~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~  458 (565)
                       . ..++   +.+.+++.+.+..+++.|+.++..+...
T Consensus       202 -~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          202 -P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             -G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             -c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence             1 2578   9999999999999999999999876653

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=81.79  E-value=1.3  Score=42.35  Aligned_cols=61  Identities=16%  Similarity=0.051  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh
Q 008437          400 PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE  460 (565)
Q Consensus       400 ~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~  460 (565)
                      ......++.+|..|.....|...++.++.++..|+..|.+..+.++..|+.+|..+|..+.
T Consensus        68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~  128 (233)
T 2f31_A           68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ  128 (233)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCC
Confidence            4556789999999999999999999999999999999998999999999999999998653

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=80.01  E-value=15  Score=37.16  Aligned_cols=109  Identities=15%  Similarity=0.167  Sum_probs=78.6

Q ss_pred             HHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHHHH--HHHHHHHhcCCCCCchhh-c-cCCchHHHHHHhcCCCCHHH
Q 008437          286 ALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGA--ATALYLNLSFLDDAKPII-G-SSHAVPFLVELCKGKTEHQC  361 (565)
Q Consensus       286 aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~--A~aaL~nLs~~~~~k~~I-~-~~g~i~~Lv~lL~~~~~~~~  361 (565)
                      -|+||-.++...-.-+++.+++..+..++.-+++...  ....|+..|.   .|..- . -...+|.++..++-..+.++
T Consensus       265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSD---aksL~~t~L~e~LPFi~~~i~~h~eDdv  341 (619)
T 3c2g_A          265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSD---AKALAKTPLENILPFLLRLIEIHPDDEV  341 (619)
T ss_dssp             HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTT---CGGGGTSCCTTHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecc---hHHHhhccccccchHHHHHhccCCCcce
Confidence            3777777665556778999999999999987765432  3444544443   23322 2 24788999998874337888


Q ss_pred             HHHHHHHHHHhccCC-CChHHHHHcCchHHHhh-ccCC
Q 008437          362 KLDALHALYNLSTIP-SNIPNLLSAGIISGLQS-LAVP  397 (565)
Q Consensus       362 ~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~-Ll~~  397 (565)
                      .-...+.|.|...+. ..|..++..|+|+.|-. +.+.
T Consensus       342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky  379 (619)
T 3c2g_A          342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY  379 (619)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred             EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence            888999999998766 57888899999999988 5543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	565
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	5e-21
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	1e-15
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	8e-05
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-11
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	2e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-05
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-06
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	6e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	5e-05
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	6e-05
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	8e-04
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	0.002

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 85.1 bits (210), Expect = 5e-21
 Identities = 48/75 (64%), Positives = 57/75 (76%)

Query: 67  PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 126
           P  PE  RCPISL+LM DPVI+++GQTYER  I+KWL  GH TCPK+Q+ L H  LTPNY
Sbjct: 3   PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62

Query: 127 CVKGLIASWCEMNGV 141
            +K LIA WCE NG+
Sbjct: 63  VLKSLIALWCESNGI 77

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.3 bits (171), Expect = 1e-15
 Identities = 26/71 (36%), Positives = 36/71 (50%)

Query: 70  PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
           P+ L   IS +LM +P I  SG TY+R  IE+ L       P T+  L    L PN  +K
Sbjct: 5   PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMK 64

Query: 130 GLIASWCEMNG 140
            +I ++   NG
Sbjct: 65  EVIDAFISENG 75

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 1e-11
 Identities = 37/243 (15%), Positives = 73/243 (30%), Gaps = 36/243 (14%)

Query: 263 ALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--- 319
             +++L S    ++   Q IGA  + +    +   K+ +   G I  L  ++ + N    
Sbjct: 6   KAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 320 HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN 378
             AA AL  NL F     K      + +   V L +     + +      L+NLS+    
Sbjct: 62  QAAAGALR-NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 379 IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD 438
              L++  +      + +P                            +           +
Sbjct: 121 KEELIADALPVLADRVIIP---------------------------FSGWCDGNSNMSRE 153

Query: 439 TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498
             +      A  CL  L + +     M    G+I +L++   N     R   + +     
Sbjct: 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC 213

Query: 499 EQR 501
              
Sbjct: 214 VLH 216

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 19/163 (11%), Positives = 49/163 (30%), Gaps = 10/163 (6%)

Query: 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVA-LLRFLESAVCERNS 277
           + +LN++ + +           ++ L                +    L  +   +   NS
Sbjct: 286 RTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNS 345

Query: 278 YAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG--------AATALYLN 329
                GA  L N++  +     +M       +   + S++ +          A   +   
Sbjct: 346 DVVRSGASLLSNMS-RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL 404

Query: 330 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372
           ++          SS  +  ++ LC+     +    A   L ++
Sbjct: 405 MASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 3e-11
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWL--SDGHSTCPKTQQKLPHLCLTPNYCV 128
           + L CPI L+L+ +PV       + + C+ K L    G S CP  +  +    L  +   
Sbjct: 20  KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79

Query: 129 KGLI 132
             L+
Sbjct: 80  SQLV 83

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 69  PPEELRCPISLQLMYDPVIIASGQ-TYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYC 127
             +E   PI   LM DPV++ S + T +R  I +       T P  +  L    + PN  
Sbjct: 19  ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARH-LLSDQTDPFNRSPLTMDQIRPNTE 77

Query: 128 VKGLIASWCE 137
           +K  I  W  
Sbjct: 78  LKEKIQRWLA 87

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 3e-09
 Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 6/196 (3%)

Query: 286 ALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGS 342
           A+ NL    N   +  LA   IP L K++++ +    + AA  ++           I+ S
Sbjct: 1   AVVNL---INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 343 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMW 402
              V  +V   +   + +        L+NLS     +  +  +G I  L  +        
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 403 TEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKC 462
              ++  L NL     G +      G +  +  +L+   +        CL +L  GN++ 
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 463 CQMVLQEGVIPALVSI 478
             ++L  G   ALV+I
Sbjct: 178 KLIILASGGPQALVNI 193

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 4/144 (2%)

Query: 273 CERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP--LLEKMISNSNSHGAATALYLNL 330
                  ++     L  L V  +++ +   + G      +E +       G   AL+  L
Sbjct: 388 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH-IL 446

Query: 331 SFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISG 390
           +     + +I   + +P  V+L     E   +  A   L  L+        + + G  + 
Sbjct: 447 ARDVHNRIVIRGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQDKEAAEAIEAEGATAP 505

Query: 391 LQSLAVPGDPMWTEKSLAVLLNLA 414
           L  L    +      + AVL  ++
Sbjct: 506 LTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 4e-07
 Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 11/214 (5%)

Query: 257 ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISN 316
           A   +  L + L       +       A+ +  L+        +M +  ++  + + + N
Sbjct: 15  ATRAIPELTKLLNDE----DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70

Query: 317 SNS----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372
           +N        A  L+ NLS   +    I  S  +P LV++     +      A+  L+NL
Sbjct: 71  TNDVETARCTAGTLH-NLSHHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLHNL 128

Query: 373 STIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVS 431
                     +  AG +  + +L    +  +   +   L  LA      + +    G   
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188

Query: 432 GLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQM 465
            L  ++ T    +     S +  + +        
Sbjct: 189 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 222

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 9/90 (10%)

Query: 245 LKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA 304
           L  D   R+       +   ++ L S         Q + A  L  LA +     E + A 
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLYSP----IENIQRVAAGVLCELAQDKE-AAEAIEAE 500

Query: 305 GVIPLLEKMISNSNS---HGAATALYLNLS 331
           G    L +++ + N      AA  L+  +S
Sbjct: 501 GATAPLTELLHSRNEGVATYAAAVLF-RMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 2/126 (1%)

Query: 383 LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGEL 442
           L+   I  L  L    D +   K+  ++  L+   A +  +  +P +VS +   +     
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 443 IE-QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 501
           +E        L  L + + +    + + G IPALV +  +        A   L      +
Sbjct: 74  VETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

Query: 502 QRDHPP 507
           +     
Sbjct: 133 EGAKMA 138

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 9/43 (20%), Positives = 14/43 (32%)

Query: 75  CPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 117
           C I  +   D  I   G      C+  W       CP  + ++
Sbjct: 26  CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 117
           + + C I   ++ DPV  +    + RICI + L    S CP  +   
Sbjct: 22  KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 6e-06
 Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 4/48 (8%)

Query: 71  EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 118
           + LRC         P ++    T    C+E         CP  Q   P
Sbjct: 5   QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 4/66 (6%)

Query: 71  EELRCPISLQLM-YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 129
           + LRC     ++     +      +   C+   +  G   C           L  N  + 
Sbjct: 21  KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC---YTPAWIQDLKINRQLD 77

Query: 130 GLIASW 135
            +I   
Sbjct: 78  SMIQLC 83

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 6e-05
 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 5/52 (9%)

Query: 71  EELRCPISLQLMYDP-----VIIASGQTYERICIEKWLSDGHSTCPKTQQKL 117
           ++  CP      Y       ++   G T    C++     G   CP+    L
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 10/211 (4%)

Query: 276 NSYAQEIGAMALFNLA-VNNNRNKELMLAAGVIPLLEKMISNSNS----HGAATALYLNL 330
           N  +Q     A   L         + ++ AG+IP     +  ++       +A AL    
Sbjct: 26  NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA 85

Query: 331 SFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISG 390
           S   +    +    A+P  + L      H  +              +    ++  G I  
Sbjct: 86  SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDP 145

Query: 391 LQSLAVPGDPMWTEKSLAVLL-----NLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQ 445
           L +L    D           L     NL  +      +++   ++  L  +L   +    
Sbjct: 146 LLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 205

Query: 446 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALV 476
             +   +  L +G  +  +MV+++GV+P LV
Sbjct: 206 ADSCWAISYLTDGPNERIEMVVKKGVVPQLV 236

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (81), Expect = 8e-04
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 73  LRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 124
           + C IS ++   PV+   S   +E+  +E+++ D     P T + L    +  
Sbjct: 1   MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 52

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 74  RCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCPKTQQKLP 118
           RCPI L+   +  +       +  +CI +W+   + TCP  +  + 
Sbjct: 7   RCPICLEDPSNYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVE 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	565
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.89
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.89
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.88
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.88
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.87
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.87
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.84
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.73
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.67
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.52
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.49
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.49
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.42
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.05
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.96
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.86
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.7
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.56
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.32
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.17
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.15
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.14
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.14
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.05
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.04
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.99
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.85
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.72
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.53
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.43
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.32
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.25
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.24
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.21
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.17
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.1
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.09
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.04
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.88
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.69
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	96.59
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.44
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.02
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.68
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	93.02
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	91.5
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	88.73
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	86.41
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	86.12
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	81.51

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.2e-23  Score=220.76  Aligned_cols=275  Identities=21%  Similarity=0.174  Sum_probs=241.1

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.++..|....+.+.+..|+..|..++ .+++.+..+++.|+++.|+.+|.+    +++.++..|+.+|.||+.+++
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~a~~aL~~l~~~~~  133 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQE  133 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-CCchhHHHHHHCCCHHHHHHHhCC----CCHHHHHHHHHHHHHhhcccc
Confidence            457888999987658899999999999998 467889999999999999999987    789999999999999998777


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC-CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~-~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      ..+..+.+.|+|+.|+.+|++++.  +..++.+|.+|+..+ +.+..+...|+++.|+.+|++......+..++.+|.+|
T Consensus       134 ~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~l  213 (529)
T d1jdha_         134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL  213 (529)
T ss_dssp             THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence            788888899999999999998754  566889999998764 45667777899999999998765678999999999999


Q ss_pred             ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437          373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL  452 (565)
Q Consensus       373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L  452 (565)
                      +.+++++..+++.|+++.|+.++.+++..++..++++|.+++.......  .. .|+++.|++++..+++.+++.|+.+|
T Consensus       214 s~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~--~~-~~~i~~Lv~ll~~~~~~~~~~a~~~L  290 (529)
T d1jdha_         214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GM-EGLLGTLVQLLGSDDINVVTCAAGIL  290 (529)
T ss_dssp             TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CC-HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             hccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchh--hh-hhcchhhhhhcccccHHHHHHHHHHH
Confidence            9999999999999999999999988999999999999999987544322  22 37899999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHhCCcHHHHHHhhh--cCChhHHHHHHHHHHHHH
Q 008437          453 FLLCNGNEKCCQMVLQEGVIPALVSISV--NGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       453 ~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~--~~s~~~k~~A~~lL~~L~  498 (565)
                      ++|+..+...+..+.+.|+++.|+.++.  +..+.+++.|..+|+.|.
T Consensus       291 ~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~  338 (529)
T d1jdha_         291 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT  338 (529)
T ss_dssp             HHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhccc
Confidence            9999999888889999999999987553  466788999999999887

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.3e-21  Score=209.71  Aligned_cols=280  Identities=15%  Similarity=0.138  Sum_probs=245.7

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.|+..|....+.++|..|++.|.+++..+++....+...|+++.|+.+|.+    .+.++++.|+++|.||+..++
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s----~~~~i~~~a~~~L~nia~~~~  194 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVKEQAIWALGNVAGDST  194 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcC----CChhHHHHHHHHHHHHhhhhH
Confidence            3578889999876578899999999999998888888888999999999999987    688999999999999997777


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCC-chhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~-k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                      .++..+.+.|+++.|+.++.+...  ...++++|.+|+..... .......++++.|+.++.+. +.+.+..++++|.+|
T Consensus       195 ~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~-d~~~~~~~~~~l~~l  273 (503)
T d1wa5b_         195 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYL  273 (503)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhh
Confidence            889999999999999999988743  46699999999876443 33334468999999999998 899999999999999


Q ss_pred             ccCCC-ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHH
Q 008437          373 STIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC  451 (565)
Q Consensus       373 s~~~~-nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~  451 (565)
                      +.... ....+++.|+++.|+.++.+++..++..++.+|.|++.........+...|+++.|..++.+.++.++..++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~  353 (503)
T d1wa5b_         274 SDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT  353 (503)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             ccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHH
Confidence            97654 45678899999999999988999999999999999998766555444335999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          452 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       452 L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      |.+++..++.....+.+.|+++.|+.++.+++..++..|..+|.++...
T Consensus       354 l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~  402 (503)
T d1wa5b_         354 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG  402 (503)
T ss_dssp             HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhc
Confidence            9999999888888899999999999999999999999999999998754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=9.7e-22  Score=205.07  Aligned_cols=280  Identities=16%  Similarity=0.204  Sum_probs=241.7

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      +.++.|++.|++..++++|..|++.|.+++..+++.+..+.+.|+++.|+.+|.+    .+..+++.|+++|.|++.+++
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~----~~~~~~~~a~~~L~nl~~~~~  131 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGDGS  131 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhcccc----CCHHHHHHHHHHHHHHhccch
Confidence            4678899999765478899999999999998888889999999999999999987    689999999999999997667


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCcH-------HHHHHHHHHHhcCCCCC-chhhccCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKGKTEHQCKLDALH  367 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~~-------~~~A~aaL~nLs~~~~~-k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~  367 (565)
                      ..+..+.+.|+++.|+.+|.....       ...+++++.+++..... .......++++.|+.++.++ +++++..|++
T Consensus       132 ~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~a~~  210 (434)
T d1q1sc_         132 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCW  210 (434)
T ss_dssp             HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcc-ccchhhhHHh
Confidence            778889999999999999987532       23467778888766433 33334468899999999998 8999999999


Q ss_pred             HHHHhccCCC-ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhcCCHHHH
Q 008437          368 ALYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQ  445 (565)
Q Consensus       368 aL~nLs~~~~-nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~~s~~~~  445 (565)
                      +|.+|+.... ....+.+.|+++.|++++.+++..++..++.+|.+++... +.+..++.. |+++.|+.+|.+.++.++
T Consensus       211 ~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~v~  289 (434)
T d1q1sc_         211 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA-GALAVFPSLLTNPKTNIQ  289 (434)
T ss_dssp             HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TGGGGHHHHTTCSSHHHH
T ss_pred             hhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhc-cccchHHHhhcccchhhh
Confidence            9999998765 4555667899999999998899999999999999999855 455666665 999999999999999999


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437          446 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       446 e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      +.|+.+|.+|+....+....+.+.|+++.|+.++.+++..++..|..+|.++....
T Consensus       290 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~  345 (434)
T d1q1sc_         290 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG  345 (434)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcC
Confidence            99999999999988888888999999999999999999999999999999987553

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=6.1e-24  Score=170.85  Aligned_cols=77  Identities=62%  Similarity=1.124  Sum_probs=73.0

Q ss_pred             CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 008437           66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS  142 (565)
Q Consensus        66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  142 (565)
                      .+++|++|.||||+++|+|||+++|||||||.||++|+..+..+||.|+.++...+++||+.|+++|++|+.+||+.
T Consensus         2 ~peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~e   78 (78)
T d1t1ha_           2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE   78 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred             CCCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCcC
Confidence            45789999999999999999999999999999999999987888999999999999999999999999999999974

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.5e-21  Score=201.88  Aligned_cols=279  Identities=19%  Similarity=0.179  Sum_probs=239.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      .+..+++.|.++ +.+.|..|+..|++++..+.. ....+.+.|++|.|+++|.+.   .++.+|..|+++|.+++..++
T Consensus        14 ~i~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~la~~~~   89 (434)
T d1q1sc_          14 SVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTS   89 (434)
T ss_dssp             CHHHHHHHHTSS-CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCG---GGHHHHHHHHHHHHHHHTSCH
T ss_pred             hHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCh
Confidence            567899999998 999999999999998754433 356788899999999999753   467899999999999987677


Q ss_pred             hhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCC----CHHHHHHHHHH
Q 008437          296 RNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKT----EHQCKLDALHA  368 (565)
Q Consensus       296 ~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~----~~~~~~~Al~a  368 (565)
                      +.+..+++.|+++.|+.+|.+++  .++.|+++|.+++.. ++.+..+.+.|+++.|+.++....    .......++++
T Consensus        90 ~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  169 (434)
T d1q1sc_          90 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT  169 (434)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred             hhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHH
Confidence            78899999999999999999875  357799999999876 456777888999999999998652    23456778889


Q ss_pred             HHHhccCCC-ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHH
Q 008437          369 LYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ  447 (565)
Q Consensus       369 L~nLs~~~~-nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~  447 (565)
                      |.+++.... ........++++.|+.++.+.+..++..++.+|.+|+........++...|+++.|++++...++..++.
T Consensus       170 l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~  249 (434)
T d1q1sc_         170 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP  249 (434)
T ss_dssp             HHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred             HHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhc
Confidence            999987654 3444456789999999998899999999999999999887666666555699999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          448 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       448 Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      |+.+|.+++..+......+.+.|+++.|+.++.+.++.+++.|..+|..|..
T Consensus       250 al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  301 (434)
T d1q1sc_         250 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA  301 (434)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhcc
Confidence            9999999999888788889999999999999999999999999999999874

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-22  Score=215.58  Aligned_cols=272  Identities=17%  Similarity=0.105  Sum_probs=235.0

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhh-ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG-ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      ..++.|++.|.+. +..++.+|+..|..+++.+ ..|..+. ..|+++.|+.+|.+.   .+..+++.|+.+|.+|+. +
T Consensus        17 ~aip~L~~lL~~~-~~~v~~~A~~~l~~l~~~~-~~~~~~~~~~~~v~~l~~~L~~~---~~~~~~~~a~~~L~~l~~-~   90 (529)
T d1jdha_          17 RAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSH-H   90 (529)
T ss_dssp             CHHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTT-S
T ss_pred             HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcc-HHHHHHHHhhhHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhC-C
Confidence            3578999999887 9999999999999999654 4555444 478899999999763   578899999999999984 7


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC-CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN  371 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~-~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n  371 (565)
                      ++++..+++.|+++.|+.+|++++.  +..|+.+|.+|+.+. ..+..+.+.|+|+.|+.+|+++ ++.++..++.+|.+
T Consensus        91 ~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~  169 (529)
T d1jdha_          91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQI  169 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHHH
T ss_pred             chhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc-ChHHHHHHHHHHHH
Confidence            8899999999999999999998754  577999999998774 4567777899999999999998 89999999999999


Q ss_pred             hccCC-CChHHHHHcCchHHHhhccC-CCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437          372 LSTIP-SNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV  449 (565)
Q Consensus       372 Ls~~~-~nk~~iv~~G~v~~Lv~Ll~-~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av  449 (565)
                      |+..+ +++..+++.|+++.|+.++. .....++..++.+|.+++.+++++..+++. |+++.|+.++...+...+++|+
T Consensus       170 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~-g~~~~L~~ll~~~~~~~~~~a~  248 (529)
T d1jdha_         170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLTDPSQRLVQNCL  248 (529)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHT-THHHHHHTTTTSSCHHHHHHHH
T ss_pred             HhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhh-hhhhhHHHHhcccchhhhhhhh
Confidence            99754 56777888999999999664 456788899999999999999999999986 9999999999999999999999


Q ss_pred             HHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       450 ~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      ++|.+++.....   .....|+++.|+.++.+++..+++.|..+|..|.
T Consensus       249 ~~l~~ls~~~~~---~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~  294 (529)
T d1jdha_         249 WTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT  294 (529)
T ss_dssp             HHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             hHHHhccccccc---hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhc
Confidence            999999865432   1223588999999999999999999999999986

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.4e-21  Score=197.45  Aligned_cols=274  Identities=16%  Similarity=0.112  Sum_probs=224.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN  297 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n  297 (565)
                      ++.||+.|.++ ++++|..|+..|.+++.+++++|..+.+.|+||.|+++|.+    +++.+|+.|+.+|.||+..++++
T Consensus         4 ip~lv~~L~~~-~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~~L~~~~~~~   78 (457)
T d1xm9a1           4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTTN   78 (457)
T ss_dssp             HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCCHHH
Confidence            68999999998 99999999999999999899999999999999999999987    78999999999999999878889


Q ss_pred             hHHHHhcCchHHHHHHhcCCc---HHHHHHHHHHHhcCCCCC--------------------------------------
Q 008437          298 KELMLAAGVIPLLEKMISNSN---SHGAATALYLNLSFLDDA--------------------------------------  336 (565)
Q Consensus       298 k~~i~~~G~i~~Lv~lL~s~~---~~~~A~aaL~nLs~~~~~--------------------------------------  336 (565)
                      +..+.+.|+++.|+.++....   .+..|+++|.+|+..+..                                      
T Consensus        79 ~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            999999999999999997542   345577777766543321                                      


Q ss_pred             ------------------chhh-ccCCchHHHHHHhc-------------------------------------------
Q 008437          337 ------------------KPII-GSSHAVPFLVELCK-------------------------------------------  354 (565)
Q Consensus       337 ------------------k~~I-~~~g~i~~Lv~lL~-------------------------------------------  354 (565)
                                        +..+ ...|+++.|+.++.                                           
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence                              1111 12355666655542                                           


Q ss_pred             -------------------------------------------------------CCCCHHHHHHHHHHHHHhccCCC--
Q 008437          355 -------------------------------------------------------GKTEHQCKLDALHALYNLSTIPS--  377 (565)
Q Consensus       355 -------------------------------------------------------~~~~~~~~~~Al~aL~nLs~~~~--  377 (565)
                                                                             ...++..+..+..++.+++....  
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                                                   11123356677778888876554  


Q ss_pred             ----ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc------CCHHHHHH
Q 008437          378 ----NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT------GELIEQEQ  447 (565)
Q Consensus       378 ----nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~------~s~~~~e~  447 (565)
                          .+..+.+.|+++.|++++.+.+..++..++.+|.+|+.+++++..+..  ++++.|+.+|..      .++.+++.
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~--~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH--hhHHHHHHHHhccccCcCCcHHHHHH
Confidence                234455689999999999999999999999999999999999988875  689999999864      24578999


Q ss_pred             HHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc-CChhHHHHHHHHHHHHH
Q 008437          448 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       448 Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L~  498 (565)
                      |+.+|.+|+..+++.++.+.+.|+++.|+.++.+ +++.+++.|..+|..|.
T Consensus       397 a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~  448 (457)
T d1xm9a1         397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW  448 (457)
T ss_dssp             HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999888889999999999999998876 57889999999999984

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.2e-20  Score=201.88  Aligned_cols=278  Identities=16%  Similarity=0.152  Sum_probs=241.3

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      +.++.++..+.+. +.+.+..|+..++.+... .......+.+.|+++.|+.+|...   .+..+|..|+++|.|++..+
T Consensus        76 ~~l~~~~~~~~s~-~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~---~~~~iq~~a~~~L~ni~~~~  151 (503)
T d1wa5b_          76 QELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGT  151 (503)
T ss_dssp             CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCC
Confidence            4678889999887 999999999999998743 334566788999999999999863   56789999999999999766


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN  371 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n  371 (565)
                      +.....+.+.|+++.|+.+|.+++  .++.|+++|.||+.. .+++..+...|+++.|+.++.+. +...+..++++|.|
T Consensus       152 ~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~n  230 (503)
T d1wa5b_         152 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSN  230 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC-CHHHHHHHHHHHHH
Confidence            777788889999999999998774  467799999999876 57788888899999999999988 88999999999999


Q ss_pred             hccCCCC-hHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCccc-HHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437          372 LSTIPSN-IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG-KEEMNSTPGLVSGLATVLDTGELIEQEQAV  449 (565)
Q Consensus       372 Ls~~~~n-k~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~-r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av  449 (565)
                      |+..... .......|+++.|+.++.+.+..+...++++|.+|+..... ...+... |+++.|+.++.+.++.++..|+
T Consensus       231 l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~v~~~al  309 (503)
T d1wa5b_         231 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV-RIPKRLVELLSHESTLVQTPAL  309 (503)
T ss_dssp             HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHGGGCSCHHHHHHHH
T ss_pred             HhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhh-hhhhhhhhcccCCchhhhhhHH
Confidence            9976543 44455678999999988888999999999999999986544 4556664 9999999999999999999999


Q ss_pred             HHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       450 ~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      .+|.+|+.........+.+.|+++.|..++.+.++.++..|..+|.++..
T Consensus       310 ~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~  359 (503)
T d1wa5b_         310 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA  359 (503)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence            99999999888888888999999999999999999999999999999864

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=3.5e-23  Score=167.17  Aligned_cols=74  Identities=35%  Similarity=0.438  Sum_probs=70.8

Q ss_pred             CCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 008437           68 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV  141 (565)
Q Consensus        68 ~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~  141 (565)
                      ++|++|.||||+++|+|||+++|||||||.||++|+..++.+||.|++++...++.||..|+++|++|+.+||.
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~   76 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW   76 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCC
Confidence            58999999999999999999999999999999999998788999999999988999999999999999999874

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.2e-21  Score=162.23  Aligned_cols=77  Identities=27%  Similarity=0.324  Sum_probs=70.2

Q ss_pred             CCCCCCCCcccccccccccCCceecCCC-cccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 008437           64 GQMPLPPEELRCPISLQLMYDPVIIASG-QTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV  141 (565)
Q Consensus        64 ~~~~~~p~~f~CpI~~~~m~dPV~~~~g-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~  141 (565)
                      ....++|++|+||||+++|+|||+++|| |||||.||++||.. +.+||.|++++...+|+||..|++.|+.|+.++.-
T Consensus        14 ~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~   91 (98)
T d1wgma_          14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ   91 (98)
T ss_dssp             CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred             hhhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence            3466799999999999999999999865 69999999999986 66899999999999999999999999999998864

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.5e-16  Score=162.93  Aligned_cols=238  Identities=18%  Similarity=0.197  Sum_probs=192.6

Q ss_pred             CCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CC
Q 008437          259 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DD  335 (565)
Q Consensus       259 G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~  335 (565)
                      +.||.||++|.+    +++++|..|+.+|.||+..++++|..+.+.|+||.|+++|++++  .+..|+++|.+|+.. ++
T Consensus         2 ~~ip~lv~~L~~----~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~   77 (457)
T d1xm9a1           2 LTIPKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT   77 (457)
T ss_dssp             CCHHHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred             CCHHHHHHHhCC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            468999999988    78999999999999999888999999999999999999998875  467799999999865 67


Q ss_pred             CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhcc---------------CCCCh
Q 008437          336 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA---------------VPGDP  400 (565)
Q Consensus       336 ~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll---------------~~~~~  400 (565)
                      ++..+.+.|+++.|+.++.+..+..++..|+++|.+|+....++......|+.+.+..++               ...+.
T Consensus        78 ~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (457)
T d1xm9a1          78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence            888999999999999999876588999999999999999888888777765444333332               22467


Q ss_pred             HHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-----------------------------------------
Q 008437          401 MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-----------------------------------------  439 (565)
Q Consensus       401 ~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-----------------------------------------  439 (565)
                      .+++.++.+|.+++...+++..+....|+++.|+.++..                                         
T Consensus       158 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  237 (457)
T d1xm9a1         158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhh
Confidence            888999999999999888888777666667766655421                                         


Q ss_pred             ----------------------------------------------------------CCHHHHHHHHHHHHHhhcCChH
Q 008437          440 ----------------------------------------------------------GELIEQEQAVSCLFLLCNGNEK  461 (565)
Q Consensus       440 ----------------------------------------------------------~s~~~~e~Av~~L~~Lc~~~~~  461 (565)
                                                                                .++..++.++.++..++.....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~  317 (457)
T d1xm9a1         238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             hhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhcccc
Confidence                                                                      1234556677777777764431


Q ss_pred             -----HHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          462 -----CCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       462 -----~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                           .+..+.++|+++.|+.++.+.++.++..|..+|..|...
T Consensus       318 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~  361 (457)
T d1xm9a1         318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             chHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC
Confidence                 234455689999999999999999999999999999854

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.9e-17  Score=161.57  Aligned_cols=190  Identities=16%  Similarity=0.111  Sum_probs=164.1

Q ss_pred             CHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHH-HhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchH
Q 008437          230 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLR-FLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP  308 (565)
Q Consensus       230 ~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~  308 (565)
                      +.+.+..|+..|..|+ ++.+++..+...|+++.|+. +|.+    ++.+++..|+.+|.+++.+++..+..+.+.|+++
T Consensus        30 ~~~~~~~Al~~L~~L~-~~~d~a~~l~~~gg~~~ll~~ll~s----~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~  104 (264)
T d1xqra1          30 DQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEA----GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR  104 (264)
T ss_dssp             HHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTC----SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             CHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            6788999999999999 56678888999999999986 5555    6899999999999999987778888999999999


Q ss_pred             HHHHHhcCC-c--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCCChHHHH
Q 008437          309 LLEKMISNS-N--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLL  383 (565)
Q Consensus       309 ~Lv~lL~s~-~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~nk~~iv  383 (565)
                      .|+.+|.+. +  .+..|+++|.+|+.+ +.++..+...|+++.|+++|+++ +..++..++.+|.+|+. +++++..++
T Consensus       105 ~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~  183 (264)
T d1xqra1         105 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLC  183 (264)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC-chHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            999999753 2  357799999999866 45677888899999999999999 99999999999999985 567999999


Q ss_pred             HcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhc
Q 008437          384 SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNS  425 (565)
Q Consensus       384 ~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~  425 (565)
                      ++|+++.|+.++.+++..+++.|+.+|.+|+... +.+..+..
T Consensus       184 ~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         184 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999999999854 34444443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.8e-16  Score=154.30  Aligned_cols=193  Identities=18%  Similarity=0.086  Sum_probs=166.2

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHH-HhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHH
Q 008437          275 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEK-MISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLV  350 (565)
Q Consensus       275 ~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~-lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv  350 (565)
                      .+.+.++.|+.+|.+|+ .+.+|+..+...|+++.|+. +|.+++  .+..|+.+|.+++.+ +..+..+.+.|+++.|+
T Consensus        29 ~~~~~~~~Al~~L~~L~-~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          29 ADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            35678899999999998 46789999999999999886 666664  357799999999976 45677888899999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCC
Q 008437          351 ELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPG  428 (565)
Q Consensus       351 ~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g  428 (565)
                      .+|.++.++.++..|+.+|.+|+.+. .++..+++.|+++.|++++.+++..++..++.+|.+|+. .++.+..+... |
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~  186 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM-G  186 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT-T
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh-h
Confidence            99986557889999999999999765 567788899999999998888999999999999999986 56778888876 9


Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhC
Q 008437          429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE  469 (565)
Q Consensus       429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~  469 (565)
                      +++.|+.+|.+.++.+++.|+.+|.+|+..++.....+...
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            99999999999999999999999999999887666666543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1e-15  Score=113.84  Aligned_cols=52  Identities=23%  Similarity=0.354  Sum_probs=47.5

Q ss_pred             ccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437           73 LRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN  125 (565)
Q Consensus        73 f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn  125 (565)
                      +.||||+++|+|||++ .|||+|||.||++|+.+ +.+||.|+++++..+|+|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence            4799999999999987 59999999999999997 5689999999999888874

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=7.2e-15  Score=118.55  Aligned_cols=62  Identities=24%  Similarity=0.397  Sum_probs=54.4

Q ss_pred             CcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHH
Q 008437           71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT-PNYCVKGLI  132 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~-pn~~l~~~i  132 (565)
                      ++|.||||+++|.|||+++|||+||+.||++|+..+..+||.|+.++...++. |...+.+.+
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            44689999999999999999999999999999987778899999999877765 777766654

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.9e-15  Score=124.63  Aligned_cols=67  Identities=24%  Similarity=0.496  Sum_probs=59.8

Q ss_pred             CcccccccccccCCceecCCCcccchHHHHHHHhcC--CCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 008437           71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDG--HSTCPKTQQKLPHLCLTPNYCVKGLIASWCE  137 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~  137 (565)
                      ++|.||||+++|.|||+++|||+||+.||.+|+...  ...||.|++++...++.||..+.++|+.+..
T Consensus        20 ~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            468899999999999999999999999999999753  3689999999998999999988888887743

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.7e-14  Score=118.64  Aligned_cols=67  Identities=16%  Similarity=0.306  Sum_probs=59.8

Q ss_pred             CCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 008437           69 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEM  138 (565)
Q Consensus        69 ~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~  138 (565)
                      +.++|.||||.++|.|||++ +|||+||+.||.+|+..   .||.|+.++...++.||..|+.+|+.+...
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~   86 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCSKL   86 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred             hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHHHH
Confidence            35678999999999999986 79999999999999853   599999999989999999999999988553

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.6e-12  Score=102.12  Aligned_cols=50  Identities=18%  Similarity=0.272  Sum_probs=45.4

Q ss_pred             cccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 008437           72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC  121 (565)
Q Consensus        72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~  121 (565)
                      ...||||++.+.|||+++|||+||+.||.+|+..+..+||.|++++....
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            34699999999999999999999999999999877788999999987644

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.6e-11  Score=90.43  Aligned_cols=50  Identities=26%  Similarity=0.307  Sum_probs=42.8

Q ss_pred             CcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 008437           71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP  124 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p  124 (565)
                      +.+.||||++.|.|||+++|||+||+.||++|    ..+||.|++++....-.|
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~   54 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP   54 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence            35799999999999999999999999999865    567999999987655444

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.3e-10  Score=88.49  Aligned_cols=52  Identities=19%  Similarity=0.458  Sum_probs=43.1

Q ss_pred             CcccccccccccCCc-----eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYDP-----VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL  122 (565)
Q Consensus        71 ~~f~CpI~~~~m~dP-----V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l  122 (565)
                      ++..||||++.+..+     ++++|||+|++.||++||..+..+||.|++++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            567899999865332     5678999999999999998777789999999876554

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.86  E-value=6e-10  Score=85.48  Aligned_cols=43  Identities=23%  Similarity=0.638  Sum_probs=39.1

Q ss_pred             ccccccccCCcee-cCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           75 CPISLQLMYDPVI-IASGQTYERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        75 CpI~~~~m~dPV~-~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      ||||++.|.+|++ ++|||+|+..||++|+.. +.+||.|++++.
T Consensus         8 C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence            9999999999865 799999999999999987 678999998875

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4e-09  Score=76.19  Aligned_cols=47  Identities=19%  Similarity=0.491  Sum_probs=39.5

Q ss_pred             ccccccccccCCc----eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437           73 LRCPISLQLMYDP----VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH  119 (565)
Q Consensus        73 f~CpI~~~~m~dP----V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~  119 (565)
                      +.||||++-|.+.    ++++|||+|++.||.+|+..++.+||.|++++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            3599999988543    3458999999999999998767789999998864

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.56  E-value=1.7e-08  Score=73.60  Aligned_cols=47  Identities=26%  Similarity=0.687  Sum_probs=39.2

Q ss_pred             CCcccccccccccCCc---eec-CCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437           70 PEELRCPISLQLMYDP---VII-ASGQTYERICIEKWLSDGHSTCPKTQQKL  117 (565)
Q Consensus        70 p~~f~CpI~~~~m~dP---V~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l  117 (565)
                      -++..||||++-|.+.   +.+ .|||+|+..||.+|+.. +.+||.|++++
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence            3566799999999763   344 59999999999999986 77899999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=1.9e-07  Score=78.75  Aligned_cols=48  Identities=15%  Similarity=0.382  Sum_probs=39.3

Q ss_pred             CcccccccccccCCc------------------eecCCCcccchHHHHHHHhc----CCCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYDP------------------VIIASGQTYERICIEKWLSD----GHSTCPKTQQKLP  118 (565)
Q Consensus        71 ~~f~CpI~~~~m~dP------------------V~~~~g~ty~r~~I~~~~~~----~~~~cP~t~~~l~  118 (565)
                      .+..||||++-|.++                  ++++|||.|++.||.+||..    ++.+||.|+..+.
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            355799999988764                  35789999999999999974    3568999998764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=6.6e-05  Score=79.29  Aligned_cols=258  Identities=12%  Similarity=0.114  Sum_probs=171.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc--CccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKD--DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~--~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      .++.+...+..  +.+++..+++.|..+...  +++..     ...++.|..++..    ++..+++.|+.+|..+....
T Consensus        50 lip~l~~~~~~--~~ev~~~~~~~l~~~~~~~~~~~~~-----~~ll~~l~~l~~~----~~~~Vr~~a~~~l~~i~~~~  118 (588)
T d1b3ua_          50 LLPFLTDTIYD--EDEVLLALAEQLGTFTTLVGGPEYV-----HCLLPPLESLATV----EETVVRDKAVESLRAISHEH  118 (588)
T ss_dssp             HHHHHHHTCCC--CHHHHHHHHHHHTTCSGGGTSGGGG-----GGGHHHHHHHTTS----SCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhcC--cHHHHHHHHHHHHHHHHHcCChhHH-----HHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHhC
Confidence            44545555543  567777777777665432  11111     2345666666665    67889999999999987432


Q ss_pred             chhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437          295 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL  372 (565)
Q Consensus       295 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL  372 (565)
                        .... ++.-.+|.+..+..+...  +..|+.++..+...-..  .+ ....++.+.+++.+. ++.+++.|+.+|..+
T Consensus       119 --~~~~-~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~--~~-~~~l~~~~~~l~~D~-~~~VR~~a~~~l~~~  191 (588)
T d1b3ua_         119 --SPSD-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--AV-KAELRQYFRNLCSDD-TPMVRRAAASKLGEF  191 (588)
T ss_dssp             --CHHH-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--HH-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHH
T ss_pred             --CHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhH--HH-HHHHHHHHHHHhccC-CHHHHHHHHHHHHHH
Confidence              2222 233456666666665533  33344444444332111  11 123568888888888 999999999999999


Q ss_pred             ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437          373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL  452 (565)
Q Consensus       373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L  452 (565)
                      +..-+.  .......++.|..++.+.+..++..++.+|..++..-.. .....  ..++.+..++.+.+..++..++.+|
T Consensus       192 ~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~-~~~~~--~i~~~l~~~~~D~~~~Vr~~~~~~l  266 (588)
T d1b3ua_         192 AKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-EDLEA--LVMPTLRQAAEDKSWRVRYMVADKF  266 (588)
T ss_dssp             HHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-HHHHH--HTHHHHHHHHTCSSHHHHHHHHHTH
T ss_pred             HHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH-HHHHH--HHHHHHHHhcccccHHHHHHHHHhH
Confidence            875432  233455677777788888999999999999988763221 12221  3578888888888999999999999


Q ss_pred             HHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          453 FLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       453 ~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      ..++..-.   .......+++.+..++.+....+|..|...|..+...
T Consensus       267 ~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~  311 (588)
T d1b3ua_         267 TELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             HHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhh---hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            99885322   1233346788999999999999999999988876654

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.9e-05  Score=83.63  Aligned_cols=263  Identities=16%  Similarity=0.126  Sum_probs=172.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437          218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN  297 (565)
Q Consensus       218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n  297 (565)
                      ++.+...+.+. ++.+|..|+..+..+++.-..   .......++.|..++.+    .+..++..|+.+|..++..-+. 
T Consensus       166 ~~~~~~l~~D~-~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d----~~~~vr~~a~~~l~~i~~~~~~-  236 (588)
T d1b3ua_         166 RQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASD----EQDSVRLLAVEACVNIAQLLPQ-  236 (588)
T ss_dssp             HHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTC----SCHHHHTTHHHHHHHHHHHSCH-
T ss_pred             HHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcC----CchhhHHHHHHHHHHhhccCCH-
Confidence            34445555555 899999999999999864321   12234456777777765    6788999999999888643221 


Q ss_pred             hHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437          298 KELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI  375 (565)
Q Consensus       298 k~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~  375 (565)
                        .....-.++.+..++...+  .+..++.+|..+...-.  ..+.....++.+..++.+. +.+++..|+.+|..++..
T Consensus       237 --~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~-~~~vr~~a~~~l~~~~~~  311 (588)
T d1b3ua_         237 --EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             --HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence              1222336788888887664  34556666766642211  1122246789999999988 899999999999988753


Q ss_pred             --CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437          376 --PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF  453 (565)
Q Consensus       376 --~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~  453 (565)
                        ........-..+++.+..++.+.+..++..++.+|..++..- +......  ..++.+..++...++.++..++..+.
T Consensus       312 l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~-~~~~~~~--~l~p~l~~~l~d~~~~v~~~~~~~l~  388 (588)
T d1b3ua_         312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL-GKDNTIE--HLLPLFLAQLKDECPEVRLNIISNLD  388 (588)
T ss_dssp             SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH-CHHHHHH--HTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred             HhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc-chhHHHH--HHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence              333444444567788888777788888887777776665421 2223332  36777888887778888888877776


Q ss_pred             HhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          454 LLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       454 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      .+...-..   .-....++|.|..+..+.+.++|..+..+|..+...
T Consensus       389 ~~~~~~~~---~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~  432 (588)
T d1b3ua_         389 CVNEVIGI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ  432 (588)
T ss_dssp             HHHHHSCH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcch---hhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            65542210   011234566677777777777777777777776544

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.14  E-value=8.5e-07  Score=65.59  Aligned_cols=48  Identities=17%  Similarity=0.272  Sum_probs=41.2

Q ss_pred             CcccccccccccCCceecCC-----CcccchHHHHHHHhc-CCCCCCCCCCCCC
Q 008437           71 EELRCPISLQLMYDPVIIAS-----GQTYERICIEKWLSD-GHSTCPKTQQKLP  118 (565)
Q Consensus        71 ~~f~CpI~~~~m~dPV~~~~-----g~ty~r~~I~~~~~~-~~~~cP~t~~~l~  118 (565)
                      +...|+||++-+.++.+.+|     +|.|.+.||++|+.. ++.+||.|++++.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            45679999999999988765     499999999999964 6789999998875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=7.7e-05  Score=70.21  Aligned_cols=216  Identities=14%  Similarity=0.108  Sum_probs=131.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437          219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK  298 (565)
Q Consensus       219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk  298 (565)
                      ..|+..|.+. ++.+|..|+..|..+..           ..+++.|+.+|.+    .+..++..|+.+|..+... ....
T Consensus        22 ~~L~~~L~d~-~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d----~~~~vr~~a~~aL~~l~~~-~~~~   84 (276)
T d1oyza_          22 DELFRLLDDH-NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSD----KNYIRRDIGAFILGQIKIC-KKCE   84 (276)
T ss_dssp             HHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCCC-TTTH
T ss_pred             HHHHHHhcCC-CHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcC----CCHHHHHHHHHHHHHhccc-cccc
Confidence            4678889887 99999999999977642           3458999999987    7899999999999988532 2222


Q ss_pred             HHHHhcCchHHHHH-HhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437          299 ELMLAAGVIPLLEK-MISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI  375 (565)
Q Consensus       299 ~~i~~~G~i~~Lv~-lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~  375 (565)
                      ..     .++.|.. +++..+  .+..|+.+|..+.....    +.....++.+...+.+. ++.++..|+.++..... 
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK-STNVRRATAFAISVIND-  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC---
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCc-chHHHHHHHHHHhhcch-
Confidence            22     1333444 344443  34556666665543211    11123456666666666 66677666666654421 


Q ss_pred             CCChHHHHHcCchHHHhhc---------------------------------cCCCChHHHHHHHHHHHHHhcCcccHHH
Q 008437          376 PSNIPNLLSAGIISGLQSL---------------------------------AVPGDPMWTEKSLAVLLNLAASAAGKEE  422 (565)
Q Consensus       376 ~~nk~~iv~~G~v~~Lv~L---------------------------------l~~~~~~~~e~al~~L~nLa~~~~~r~~  422 (565)
                               ...++.++.+                                 +.+.+..+...++.++..+         
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---------  215 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR---------  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT---------
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchh---------
Confidence                     1233333333                                 3333444444444444332         


Q ss_pred             HhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc-CChhHHHHHHHHHH
Q 008437          423 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLM  495 (565)
Q Consensus       423 i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-~s~~~k~~A~~lL~  495 (565)
                        ....+++.|++.+.+  +.++..|+.+|..+.           +.++++.|..++.+ .+..++..|...|+
T Consensus       216 --~~~~~~~~L~~~l~d--~~vr~~a~~aL~~ig-----------~~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         216 --KDKRVLSVLCDELKK--NTVYDDIIEAAGELG-----------DKTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             --TCGGGHHHHHHHHTS--SSCCHHHHHHHHHHC-----------CGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             --hhhhhHHHHHHHhCC--hHHHHHHHHHHHHcC-----------CHHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence              123567777777764  346777888877664           23578888876665 56788888887764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.1e-06  Score=70.42  Aligned_cols=43  Identities=21%  Similarity=0.549  Sum_probs=35.2

Q ss_pred             ccccccccCC------------------ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437           75 CPISLQLMYD------------------PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP  118 (565)
Q Consensus        75 CpI~~~~m~d------------------PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~  118 (565)
                      |+||++-|.+                  +++++|||.|...||.+|+.. +.+||.|++++.
T Consensus        24 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             CSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            7777766665                  234689999999999999986 678999998864

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=6e-05  Score=86.41  Aligned_cols=272  Identities=12%  Similarity=0.126  Sum_probs=171.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437          217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR  296 (565)
Q Consensus       217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~  296 (565)
                      .+..+++.+.+. |++.|.-|+..|......+.-....-....+++.|++.|.+    .+.++|..|+.+|..|...-. 
T Consensus         4 ~~~~ll~k~~~~-D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D----~~~~Vq~~A~k~l~~l~~~~~-   77 (1207)
T d1u6gc_           4 HISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED----KNGEVQNLAVKCLGPLVSKVK-   77 (1207)
T ss_dssp             HHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTSC-
T ss_pred             hHHHHHHhcCCC-CHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHhCc-
Confidence            467889999987 99999999999988764432111111123468889998876    789999999999999874322 


Q ss_pred             hhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhc----CCCCCchhhc--cCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437          297 NKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLS----FLDDAKPIIG--SSHAVPFLVELCKGKTEHQCKLDALHA  368 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs----~~~~~k~~I~--~~g~i~~Lv~lL~~~~~~~~~~~Al~a  368 (565)
                        ...+ ...++.|+..+.++.  .+..+..+|..+.    ..........  ....++.|...+....+..++..|+.+
T Consensus        78 --~~~~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~  154 (1207)
T d1u6gc_          78 --EYQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI  154 (1207)
T ss_dssp             --HHHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred             --HhhH-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence              2221 234666766665443  2444444444332    1111111111  123445555555554477889999999


Q ss_pred             HHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHH
Q 008437          369 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQ  447 (565)
Q Consensus       369 L~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~  447 (565)
                      |..+....+.-..-....+++.|+..+.+.+..+++.|+.+|..|+..-..  ...  ...+..+++.+.. .+...+..
T Consensus       155 l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~~--~~~~~~ll~~l~~~~~~~~~~~  230 (1207)
T d1u6gc_         155 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRT  230 (1207)
T ss_dssp             HHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTT
T ss_pred             HHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HHH--HHHHHHHHHHHccCCCHHHHHH
Confidence            998865332211111224677788877788889999999999999874321  222  2467777776653 45556677


Q ss_pred             HHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcc
Q 008437          448 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ  502 (565)
Q Consensus       448 Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~  502 (565)
                      ++.+|..|++..+.... -.-..+++.++..+...++..|+.|..+|..+...-.
T Consensus       231 ~~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~  284 (1207)
T d1u6gc_         231 YIQCIAAISRQAGHRIG-EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP  284 (1207)
T ss_dssp             HHHHHHHHHHHSSGGGT-TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcchhhH-HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhCh
Confidence            88888888864432100 0114678888899999999999999999988775443

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=0.00079  Score=62.91  Aligned_cols=202  Identities=11%  Similarity=0.028  Sum_probs=128.0

Q ss_pred             cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC
Q 008437          258 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD  335 (565)
Q Consensus       258 ~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~  335 (565)
                      ....+.|+.+|.+    .++.++..|+.+|..+.  +         ..+++.|+.+|++++.  +..|+.+|..+.....
T Consensus        18 ~~~~~~L~~~L~d----~~~~vR~~A~~~L~~~~--~---------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~   82 (276)
T d1oyza_          18 KLNDDELFRLLDD----HNSLKRISSARVLQLRG--G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK   82 (276)
T ss_dssp             TSCHHHHHHHTTC----SSHHHHHHHHHHHHHHC--C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred             cCCHHHHHHHhcC----CCHHHHHHHHHHHHhhC--C---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence            4457788999987    78999999999998763  2         2358999999988754  4557777777654322


Q ss_pred             CchhhccCCchHHHHHHh-cCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437          336 AKPIIGSSHAVPFLVELC-KGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA  414 (565)
Q Consensus       336 ~k~~I~~~g~i~~Lv~lL-~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa  414 (565)
                      ...     ..++.|..++ .+. ++.++..|+.+|.+++.......    ..+++.+...+.+.+..++..++.++..+.
T Consensus        83 ~~~-----~~~~~l~~~~l~d~-~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~  152 (276)
T d1oyza_          83 CED-----NVFNILNNMALNDK-SACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIN  152 (276)
T ss_dssp             THH-----HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             ccc-----chHHHHHHHHhcCC-ChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcCcchHHHHHHHHHHhhcc
Confidence            211     2345555544 455 89999999999999876443221    235666777777777887777777665432


Q ss_pred             cCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHH----------------------HhCCcH
Q 008437          415 ASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMV----------------------LQEGVI  472 (565)
Q Consensus       415 ~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v----------------------~~~G~v  472 (565)
                      .           ...++.+..++...+...+..+..++..+..........+                      ....++
T Consensus       153 ~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~  221 (276)
T d1oyza_         153 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVL  221 (276)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGH
T ss_pred             h-----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhH
Confidence            2           2556667777766666666666666555444332211110                      112467


Q ss_pred             HHHHHhhhcCChhHHHHHHHHHHHH
Q 008437          473 PALVSISVNGSTRGRDKAQRLLMLF  497 (565)
Q Consensus       473 ~~Lv~L~~~~s~~~k~~A~~lL~~L  497 (565)
                      +.|+..+.+  +.+|..|..+|..+
T Consensus       222 ~~L~~~l~d--~~vr~~a~~aL~~i  244 (276)
T d1oyza_         222 SVLCDELKK--NTVYDDIIEAAGEL  244 (276)
T ss_dssp             HHHHHHHTS--SSCCHHHHHHHHHH
T ss_pred             HHHHHHhCC--hHHHHHHHHHHHHc
Confidence            777776654  34566677766655

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.0023  Score=63.56  Aligned_cols=278  Identities=13%  Similarity=0.074  Sum_probs=162.3

Q ss_pred             hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~-~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      +.+..++..+.+. .+...+..++..+..+..........-.....++.++..+.+.  ..+..++..|+.++.++....
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~--~~~~~v~~~a~~~l~~~~~~~  204 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFT  204 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHTTTT
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhccc--ccCHHHHHHHHHHHHHHHHhh
Confidence            4567788887654 2556677778888777644332222112244567777777652  245778999999998886432


Q ss_pred             chhh-HHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437          295 NRNK-ELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL  369 (565)
Q Consensus       295 ~~nk-~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL  369 (565)
                      .... .........+.+..++..++.  +..++.+|..+.....  ....+ .....+.+...+.+. +...+..|+..+
T Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~~-~~~~~~~a~~~l  282 (458)
T d1ibrb_         205 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSD-IDEVALQGIEFW  282 (458)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCS-SHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence            2111 111122345666666666543  3446666666543211  11111 122334445556666 788888899888


Q ss_pred             HHhccCC---------------------CChHHHHHcCchHHHhhccC-------CCChHHHHHHHHHHHHHhcCcccHH
Q 008437          370 YNLSTIP---------------------SNIPNLLSAGIISGLQSLAV-------PGDPMWTEKSLAVLLNLAASAAGKE  421 (565)
Q Consensus       370 ~nLs~~~---------------------~nk~~iv~~G~v~~Lv~Ll~-------~~~~~~~e~al~~L~nLa~~~~~r~  421 (565)
                      ..++...                     .......-...++.+...+.       +.+..++..+..++..++..-..  
T Consensus       283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--  360 (458)
T d1ibrb_         283 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--  360 (458)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--
T ss_pred             HHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--
Confidence            8775211                     01111111233444555322       12334566777777777653221  


Q ss_pred             HHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          422 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       422 ~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      .+..  ..++.+.+.+.+.+...++.|+.+|..++.... +.... .-..+++.|+..+.+.++++|..|..+|..+.+.
T Consensus       361 ~~~~--~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         361 DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             THHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhh--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            1221  345566677777889999999999999986432 11111 1236789999999999999999999999988766


Q ss_pred             cc
Q 008437          501 RQ  502 (565)
Q Consensus       501 r~  502 (565)
                      -.
T Consensus       438 ~~  439 (458)
T d1ibrb_         438 LP  439 (458)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=0.0028  Score=64.60  Aligned_cols=273  Identities=12%  Similarity=0.048  Sum_probs=171.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHH
Q 008437          221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL  300 (565)
Q Consensus       221 ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~  300 (565)
                      ++..|... +.-....+...+..++.........   .+.+..+..++..-....+...+..|+..|..|.. .++.|..
T Consensus       127 f~~~l~~~-d~~~~~~s~~i~~ll~~~~~~~~~~---~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~  201 (477)
T d1ho8a_         127 FDVSLKGD-FQTVLISGFNVVSLLVQNGLHNVKL---VEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDV  201 (477)
T ss_dssp             HHHCSCSS-HHHHHHHHHHHHHHHTSTTTCCHHH---HHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             HHHhccCc-hhHHHHHHHHHHHHHHhccccccch---HHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHH
Confidence            33444433 5555666677777777554333221   12232233333222223677888889998888874 5778888


Q ss_pred             HHhc--CchHHHHHHhcCC-----------------cH--HHHHHHHHHHhcCCCCCchhhccC--CchHHHHHHhcCCC
Q 008437          301 MLAA--GVIPLLEKMISNS-----------------NS--HGAATALYLNLSFLDDAKPIIGSS--HAVPFLVELCKGKT  357 (565)
Q Consensus       301 i~~~--G~i~~Lv~lL~s~-----------------~~--~~~A~aaL~nLs~~~~~k~~I~~~--g~i~~Lv~lL~~~~  357 (565)
                      +...  ..++.|+.+|+..                 ..  .-+++-+++.||...+....+...  +.|+.|+++++...
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~  281 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI  281 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence            7643  4577777777531                 00  233777888899876665555544  45899999998766


Q ss_pred             CHHHHHHHHHHHHHhccCCC--C----hHHHHHcCchHHHhhccCC--CChHHHHHHHHH-------HHHHhcCcccHHH
Q 008437          358 EHQCKLDALHALYNLSTIPS--N----IPNLLSAGIISGLQSLAVP--GDPMWTEKSLAV-------LLNLAASAAGKEE  422 (565)
Q Consensus       358 ~~~~~~~Al~aL~nLs~~~~--n----k~~iv~~G~v~~Lv~Ll~~--~~~~~~e~al~~-------L~nLa~~~~~r~~  422 (565)
                      ...+.+-++.+|.||+....  +    ...++..++++.+-.|...  .|+.+.+..-.+       +..|++.++...+
T Consensus       282 KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~E  361 (477)
T d1ho8a_         282 KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAE  361 (477)
T ss_dssp             SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            78899999999999986533  2    3345556666554445443  355554432222       1223322222222


Q ss_pred             H------------------------hcC-CCCHHHHHHHhhc----------CCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 008437          423 M------------------------NST-PGLVSGLATVLDT----------GELIEQEQAVSCLFLLCNGNEKCCQMVL  467 (565)
Q Consensus       423 i------------------------~~~-~g~v~~Lv~lL~~----------~s~~~~e~Av~~L~~Lc~~~~~~~~~v~  467 (565)
                      +                        -+. ...+..|+++|..          .++.+..-|+-=+..+|++-+.-+..+.
T Consensus       362 v~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~  441 (477)
T d1ho8a_         362 LDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLD  441 (477)
T ss_dssp             HHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred             HhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHH
Confidence            2                        111 1357889999862          2455566666677888987776677777


Q ss_pred             hCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          468 QEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       468 ~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      +-|+=..++.|+.+.++.+|..|-..++.|-
T Consensus       442 ~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         442 KTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            7898777899999999999999998888754

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=0.0046  Score=66.49  Aligned_cols=266  Identities=11%  Similarity=0.092  Sum_probs=158.5

Q ss_pred             HHHHHH-HHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437          217 RYQDFL-NVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN  295 (565)
Q Consensus       217 ~i~~ll-~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~  295 (565)
                      .+..++ ..+.+. |..+|..|-..|..+...+.        .+++..|+.++.+.  ..+..++..|+..|.|.-....
T Consensus         5 ~~~~~L~~~~~s~-d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~--~~~~~~r~~A~i~lkn~i~~~~   73 (861)
T d2bpta1           5 EFAQLLENSILSP-DQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDE--NTKLEGRILAALTLKNELVSKD   73 (861)
T ss_dssp             HHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCT--TSCHHHHHHHHHHHHTTTCCSS
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhccc
Confidence            344445 445666 89999999999998875432        35677888888762  2467788888888888753222


Q ss_pred             hhhHHH--------Hh----cCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhcc---CCchHHHHHHhcCCCC
Q 008437          296 RNKELM--------LA----AGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGS---SHAVPFLVELCKGKTE  358 (565)
Q Consensus       296 ~nk~~i--------~~----~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~---~g~i~~Lv~lL~~~~~  358 (565)
                      ......        +.    ..+...++..|.+++.  +..++.++..++..+     +..   ...++.|+..+.+..+
T Consensus        74 ~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~-----~p~~~wpeli~~L~~~~~s~~~  148 (861)
T d2bpta1          74 SVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIE-----LPHGAWPELMKIMVDNTGAEQP  148 (861)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-----GGGTCCHHHHHHHHHHTSTTSC
T ss_pred             chhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-----CCcCchHHHHHHHHHHhcCCCc
Confidence            111000        00    1123455666665543  333555555554221     111   2467888888887645


Q ss_pred             HHHHHHHHHHHHHhccCCCChHHHHH---cCchHHHhh-cc-CCCChHHHHHHHHHHHHHhcCcccHH---HHhcCCCCH
Q 008437          359 HQCKLDALHALYNLSTIPSNIPNLLS---AGIISGLQS-LA-VPGDPMWTEKSLAVLLNLAASAAGKE---EMNSTPGLV  430 (565)
Q Consensus       359 ~~~~~~Al~aL~nLs~~~~nk~~iv~---~G~v~~Lv~-Ll-~~~~~~~~e~al~~L~nLa~~~~~r~---~i~~~~g~v  430 (565)
                      ...+..|+.+|..++..-.......-   ...+..++. +. .+.+..++..++.+|.++...-....   ....  ..+
T Consensus       149 ~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~--~~~  226 (861)
T d2bpta1         149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERN--YLM  226 (861)
T ss_dssp             HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH--HHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhh--HHH
Confidence            67788899999998744332211111   123344444 22 33567888899999988876432111   1111  345


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          431 SGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       431 ~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      ..|...+...++..+..|+.+|..++....+.....+..-+...+.....+.++.++..|..++..+.+.
T Consensus       227 ~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~  296 (861)
T d2bpta1         227 QVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEE  296 (861)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            6677778888999999999999998864432222222222222334556667888888888887766543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0042  Score=68.58  Aligned_cols=273  Identities=14%  Similarity=0.071  Sum_probs=147.8

Q ss_pred             hHHHHHH-HHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFL-NVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll-~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      +.+..++ ..+.+. ++..|..|+.+|..++....+.-.... ...++.|+..|.+    .++.++..|+++|..++...
T Consensus       394 ~~~l~~l~~~l~s~-~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d----~~~~Vr~~a~~~l~~~~~~~  467 (888)
T d1qbkb_         394 PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSD----KKALVRSITCWTLSRYAHWV  467 (888)
T ss_dssp             HHHHHHHHHTTTSS-SHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTS----SCHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHhhccc-hhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccC----CCHHHHHHHHHHHHHHHHHh
Confidence            3444444 445555 899999999999998854332111111 2346667777765    78999999999999886321


Q ss_pred             c-hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC--CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437          295 N-RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL  369 (565)
Q Consensus       295 ~-~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~--~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL  369 (565)
                      . ...... -...++.|+..+.+++.  ++.|+.+|.++...  +.....+  ...++.|+..+... ....+..+..+|
T Consensus       468 ~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~-~~~~~~~~~~al  543 (888)
T d1qbkb_         468 VSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKY-QHKNLLILYDAI  543 (888)
T ss_dssp             HSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTC-CHHHHHHHHHHH
T ss_pred             hhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence            1 111111 23567778877766643  46688888777532  1211111  23556666666665 444444444444


Q ss_pred             HHhcc---CCCChHHHHHcCchHHHhhc------------------------c---------------------------
Q 008437          370 YNLST---IPSNIPNLLSAGIISGLQSL------------------------A---------------------------  395 (565)
Q Consensus       370 ~nLs~---~~~nk~~iv~~G~v~~Lv~L------------------------l---------------------------  395 (565)
                      ..++.   ..-++..+++ ..++.+++.                        +                           
T Consensus       544 ~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  622 (888)
T d1qbkb_         544 GTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAM  622 (888)
T ss_dssp             HHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44331   1111111110 011111110                        0                           


Q ss_pred             ---------CCCChHHHHHHHHHHHHHhcC-cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHH
Q 008437          396 ---------VPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQM  465 (565)
Q Consensus       396 ---------~~~~~~~~e~al~~L~nLa~~-~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~  465 (565)
                               ...+......++.++..++.. ...-..++.....++.+...+.+.++.+++.|..+|..|+.........
T Consensus       623 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~  702 (888)
T d1qbkb_         623 LNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKP  702 (888)
T ss_dssp             HHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred             HHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHH
Confidence                     011223333444444444431 1112233333356677777788888999999999998888654322111


Q ss_pred             HHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437          466 VLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ  500 (565)
Q Consensus       466 v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~  500 (565)
                      .+ ..+++.|+.-+.+....++..|..++-.+...
T Consensus       703 ~l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~  736 (888)
T d1qbkb_         703 CI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQ  736 (888)
T ss_dssp             GH-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence            11 12556666666667778888888888776644

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.21  E-value=2.2e-05  Score=64.69  Aligned_cols=105  Identities=17%  Similarity=0.103  Sum_probs=81.2

Q ss_pred             CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh
Q 008437          358 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL  437 (565)
Q Consensus       358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL  437 (565)
                      ++.++..|+.+|..+.           ..+++.|+.++.+.+..++..|+.+|.++..           .+.++.|+++|
T Consensus         5 ~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l   62 (111)
T d1te4a_           5 NKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLL   62 (111)
T ss_dssp             CCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhh
Confidence            4445555555554432           2467889998888999999999999876643           24678899999


Q ss_pred             hcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHH
Q 008437          438 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM  495 (565)
Q Consensus       438 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~  495 (565)
                      .+.++.++..|+.+|..+..           .++++.|..++.+.++.+|+.|...|.
T Consensus        63 ~d~~~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          63 EDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ccchhHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999987742           245788888999999999999988874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0027  Score=62.96  Aligned_cols=267  Identities=9%  Similarity=-0.005  Sum_probs=159.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437          219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK  298 (565)
Q Consensus       219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk  298 (565)
                      ..++..+.+. |.++|..|-..|..+...+.        .+++..|+.+|.+.  ..+..++..|+..|.|.-.......
T Consensus         3 ~~il~~~~s~-d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~--~~~~~~R~~A~i~lk~~l~~~~~~~   71 (458)
T d1ibrb_           3 ITILEKTVSP-DRLELEAAQKFLERAAVENL--------PTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDI   71 (458)
T ss_dssp             HHHHHHTTCS-CHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred             HHHHHHHhCc-CHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhccCchh
Confidence            4566666776 89999999999999986432        23577788887652  2456788888888887643222111


Q ss_pred             -HHHH----------hcCchHHHHHHhcCCcH-HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC-CCHHHHHHH
Q 008437          299 -ELML----------AAGVIPLLEKMISNSNS-HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-TEHQCKLDA  365 (565)
Q Consensus       299 -~~i~----------~~G~i~~Lv~lL~s~~~-~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~-~~~~~~~~A  365 (565)
                       ....          .......++..+.+... ...++.++..++..+...  -.-.+.++.|+..+.++ .+...+..+
T Consensus        72 ~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~  149 (458)
T d1ibrb_          72 KAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKEST  149 (458)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             hhHHhhhhccCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHhCCc--ccCcchhHHHHHHHHhhcchHHHHHHH
Confidence             1111          11234455666655432 112333333322110000  01146889999988764 256678888


Q ss_pred             HHHHHHhccCCC-ChHHHHHcCchHHHhhccCC--CChHHHHHHHHHHHHHhcCcccHH--HHhcCCCCHHHHHHHhhcC
Q 008437          366 LHALYNLSTIPS-NIPNLLSAGIISGLQSLAVP--GDPMWTEKSLAVLLNLAASAAGKE--EMNSTPGLVSGLATVLDTG  440 (565)
Q Consensus       366 l~aL~nLs~~~~-nk~~iv~~G~v~~Lv~Ll~~--~~~~~~e~al~~L~nLa~~~~~r~--~i~~~~g~v~~Lv~lL~~~  440 (565)
                      +.+|..++.... ....-.-..+++.++..+.+  .+..++..++.++.++........  .... ....+.|..++.+.
T Consensus       150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  228 (458)
T d1ibrb_         150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQCP  228 (458)
T ss_dssp             HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTTCS
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHhHhhHHHHhcCC
Confidence            898888874322 21111223356677774443  456788899999998876432211  1111 13455666677778


Q ss_pred             CHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437          441 ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE  499 (565)
Q Consensus       441 s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~  499 (565)
                      ++..+..++.+|..++..........+.....+.+.....+.++..+..|...+..+.+
T Consensus       229 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         229 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            99999999999999987554322112223334445566777888888888888877654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=8.4e-05  Score=59.58  Aligned_cols=43  Identities=16%  Similarity=0.416  Sum_probs=32.7

Q ss_pred             ccccccccccC--C-ceecCCCcccchHHHHHHHhc----CC---CCCCCCCC
Q 008437           73 LRCPISLQLMY--D-PVIIASGQTYERICIEKWLSD----GH---STCPKTQQ  115 (565)
Q Consensus        73 f~CpI~~~~m~--d-PV~~~~g~ty~r~~I~~~~~~----~~---~~cP~t~~  115 (565)
                      ..||||.+-+.  | |++.+|||.||+.||..|+..    +.   .+||.++-
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            45999998774  3 445689999999999999962    32   35998653

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.009  Score=67.66  Aligned_cols=270  Identities=12%  Similarity=0.075  Sum_probs=159.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437          219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK  298 (565)
Q Consensus       219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk  298 (565)
                      ..+...+....+..++..|+..|..++......-... ...+++.|+..|.+    .+..++..|+.+|..++...... 
T Consensus       133 ~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~-~~~il~~l~~~l~~----~~~~vR~~A~~~l~~l~~~~~~~-  206 (1207)
T d1u6gc_         133 GRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTS----PRLAVRKRTIIALGHLVMSCGNI-  206 (1207)
T ss_dssp             HHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGC----SSHHHHHHHHHHHHHHTTTC----
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH-HHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHCCHH-
Confidence            3445555555578899999999998876543211110 12234455555544    67889999999999987532211 


Q ss_pred             HHHHhcCchHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437          299 ELMLAAGVIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLS  373 (565)
Q Consensus       299 ~~i~~~G~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs  373 (565)
                       .  -...++.++..|...   ..+..++.++..++....  ..+..  ...++.+++.+... +.+.++.++.+|..+.
T Consensus       207 -~--~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~  280 (1207)
T d1u6gc_         207 -V--FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG--HRIGEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFV  280 (1207)
T ss_dssp             ----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS--GGGTTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHH
T ss_pred             -H--HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc--hhhHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHH
Confidence             1  123466666666432   223334444444432211  12222  46789999999988 7889999999988886


Q ss_pred             cCCCChHHHHHcCchHHHhhcc-------------------------------------CCCChHHHHHHHHHHHHHhcC
Q 008437          374 TIPSNIPNLLSAGIISGLQSLA-------------------------------------VPGDPMWTEKSLAVLLNLAAS  416 (565)
Q Consensus       374 ~~~~nk~~iv~~G~v~~Lv~Ll-------------------------------------~~~~~~~~e~al~~L~nLa~~  416 (565)
                      ........-.-..+++.++..+                                     .+....++..++.+|..+...
T Consensus       281 ~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~  360 (1207)
T d1u6gc_         281 RRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST  360 (1207)
T ss_dssp             HCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTT
T ss_pred             HhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHH
Confidence            4322111100111222222111                                     112345677888888888764


Q ss_pred             -cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChH----------------HHHHHH--hCCcHHHHHH
Q 008437          417 -AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEK----------------CCQMVL--QEGVIPALVS  477 (565)
Q Consensus       417 -~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~----------------~~~~v~--~~G~v~~Lv~  477 (565)
                       ++.-..+..  ..++.|+..+...++.++..++.++..+......                ....+.  -..+++.+..
T Consensus       361 ~~~~l~~~~~--~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~  438 (1207)
T d1u6gc_         361 RHEMLPEFYK--TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHK  438 (1207)
T ss_dssp             CCTTHHHHHT--TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHH
Confidence             333344443  5889999999888888999998888776531100                001111  1245666777


Q ss_pred             hhhcCChhHHHHHHHHHHHHHhhcc
Q 008437          478 ISVNGSTRGRDKAQRLLMLFREQRQ  502 (565)
Q Consensus       478 L~~~~s~~~k~~A~~lL~~L~~~r~  502 (565)
                      ...+.+..++..+..+|..|...-+
T Consensus       439 ~l~~~~~~~r~~~~~~l~~l~~~~~  463 (1207)
T d1u6gc_         439 QMKEKSVKTRQCCFNMLTELVNVLP  463 (1207)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred             HhcCCchhHHHHHHHHHHHHHHHcc
Confidence            7788899999999999988776543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.04  E-value=0.00035  Score=57.06  Aligned_cols=89  Identities=15%  Similarity=0.128  Sum_probs=74.5

Q ss_pred             CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHH
Q 008437          343 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE  422 (565)
Q Consensus       343 ~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~  422 (565)
                      ..+++.|+++|.++ ++.++..|+.+|.++..          .++++.|+.++.+.++.++..|+.+|..+..       
T Consensus        21 ~~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~-------   82 (111)
T d1te4a_          21 DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------   82 (111)
T ss_dssp             STTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc-------
Confidence            35789999999988 99999999999977642          2468889998888899999999999987632       


Q ss_pred             HhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437          423 MNSTPGLVSGLATVLDTGELIEQEQAVSCLF  453 (565)
Q Consensus       423 i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~  453 (565)
                          +..++.|..++.+.++.+++.|+.+|-
T Consensus        83 ----~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 ----ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             ----HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ----cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                256788888999999999999998873

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.011  Score=65.06  Aligned_cols=146  Identities=11%  Similarity=0.049  Sum_probs=88.9

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC--ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHH
Q 008437          345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKE  421 (565)
Q Consensus       345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~--nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~  421 (565)
                      .++.+...+.+. +..++..|..+|..|+..-.  ....+  ...++.|+.-+.+....++..++.++..|+..- +.-.
T Consensus       666 l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~  742 (888)
T d1qbkb_         666 ILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ  742 (888)
T ss_dssp             HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred             HHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345555666666 77888888888887764322  11111  135666777666677788899999998887632 1111


Q ss_pred             HHhcCCCCHHHHHHHhhc--CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHH-hhhcCChhHHHHHHHHHHH
Q 008437          422 EMNSTPGLVSGLATVLDT--GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS-ISVNGSTRGRDKAQRLLML  496 (565)
Q Consensus       422 ~i~~~~g~v~~Lv~lL~~--~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~-L~~~~s~~~k~~A~~lL~~  496 (565)
                      ..+  +..++.|+.+|.+  ....++++++.+|..|+...++...-.+ .-+++.++. |..-.+..-|+.|-.-|-.
T Consensus       743 py~--~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l-~~~~~~~~~~l~~~~d~~ek~~~~~g~~~  817 (888)
T d1qbkb_         743 PYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML-QQFIRPWCTSLRNIRDNEEKDSAFRGICT  817 (888)
T ss_dssp             GGS--HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGG-GGTHHHHHHHHTTSCCSHHHHHHHHHHHH
T ss_pred             hhH--HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhH-HHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence            112  2467788888875  3566899999999999876654221111 235566554 3333455555555544433

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.0083  Score=61.06  Aligned_cols=232  Identities=14%  Similarity=0.129  Sum_probs=149.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc--cCCHHHHHHHhcccccC-------------CCHHHHHHHH
Q 008437          220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCE-------------RNSYAQEIGA  284 (565)
Q Consensus       220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~s-------------~~~~~q~~A~  284 (565)
                      .++..|....+.+.+.-|+..+..+.+ .+++|..+..  ...++.|+.+|.....+             .+.+++-+++
T Consensus       168 ~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~l  246 (477)
T d1ho8a_         168 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  246 (477)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHH
Confidence            455556554578888888899998885 4678887743  55788888888654321             1346678888


Q ss_pred             HHHHHhhccCchhhHHHHhc--CchHHHHHHhcCCc---HHHHHHHHHHHhcCCCC--Cc----hhhccCCchHHHHHHh
Q 008437          285 MALFNLAVNNNRNKELMLAA--GVIPLLEKMISNSN---SHGAATALYLNLSFLDD--AK----PIIGSSHAVPFLVELC  353 (565)
Q Consensus       285 ~aL~nLa~~~~~nk~~i~~~--G~i~~Lv~lL~s~~---~~~~A~aaL~nLs~~~~--~k----~~I~~~g~i~~Lv~lL  353 (565)
                      .+|+-|+. +++....+.+.  +.|+.|+.+++...   ....++++|.|+.....  +.    ..+...++ .+++..|
T Consensus       247 l~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~-l~~l~~L  324 (477)
T d1ho8a_         247 LLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL  324 (477)
T ss_dssp             HHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred             HHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcch-hHHHHHH
Confidence            99999986 56667777765  45999999987542   23448899999875422  22    22233344 4556666


Q ss_pred             cCC--CCHHHHHHHHHHH--------HHhccCCC------------------------ChHHHHH--cCchHHHhhccC-
Q 008437          354 KGK--TEHQCKLDALHAL--------YNLSTIPS------------------------NIPNLLS--AGIISGLQSLAV-  396 (565)
Q Consensus       354 ~~~--~~~~~~~~Al~aL--------~nLs~~~~------------------------nk~~iv~--~G~v~~Lv~Ll~-  396 (565)
                      ...  .|++..++ +..|        ..|++.++                        |..++-+  -.++..|++++. 
T Consensus       325 ~~r~~~Dedl~ed-l~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~  403 (477)
T d1ho8a_         325 SERKYSDEELRQD-ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQA  403 (477)
T ss_dssp             HSSCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHH
T ss_pred             hcCCCCCHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhh
Confidence            543  35554432 2222        22332222                        2222222  135677888764 


Q ss_pred             ---------CCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 008437          397 ---------PGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC  456 (565)
Q Consensus       397 ---------~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc  456 (565)
                               +.++.+..-|+.=|..++. .++||..+-.. |+=..++++|.+.+++++.+|+.++..|-
T Consensus       404 ~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~l-g~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         404 KVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                     2245555566666777777 56777777665 88888999999999999999999987654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.032  Score=59.91  Aligned_cols=263  Identities=9%  Similarity=0.013  Sum_probs=160.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437          219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK  298 (565)
Q Consensus       219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk  298 (565)
                      ..++....+. |.++|..|-..|..+.+.+.        .|++..|+..+.+.  +.+..++..|+..|.|.-.......
T Consensus         4 ~~~L~~~~s~-d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~--~~~~~iR~~A~i~lKn~i~~~~~~~   72 (876)
T d1qgra_           4 ITILEKTVSP-DRLELEAAQKFLERAAVENL--------PTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDI   72 (876)
T ss_dssp             HHHHHGGGCS-CHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred             HHHHHHHhCc-CHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhccccch
Confidence            3455555565 89999999999998875432        35778888888652  2467788999988988753222111


Q ss_pred             HHH-------H----hcCchHHHHHHhcCCcH-HHHHHHHHHHhcCCCCCchhhcc-CCchHHHHHHhcCC-CCHHHHHH
Q 008437          299 ELM-------L----AAGVIPLLEKMISNSNS-HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGK-TEHQCKLD  364 (565)
Q Consensus       299 ~~i-------~----~~G~i~~Lv~lL~s~~~-~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~-~~~~~~~~  364 (565)
                      ..-       .    .......|+..|.+++. +..++.++..++..+-   -... .+.++.|++.+.++ .+...+..
T Consensus        73 ~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~~~~~~a~~i~~i~~~~~---p~~~Wpeli~~L~~~l~~~~~~~~~~~~  149 (876)
T d1qgra_          73 KAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEI---PVNQWPELIPQLVANVTNPNSTEHMKES  149 (876)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSSCHHHHHHHHHHHHHG---GGTCCTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred             hhhhhcccccCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHC---CccccHHHHHHHHHHhcCCCCcHHHHHH
Confidence            100       0    11234566677765532 2234445544442210   0011 46889999998765 24667888


Q ss_pred             HHHHHHHhccCCCChHHHHH--cCchHHHhhccCC--CChHHHHHHHHHHHHHhcCcccHH---HHhcCCCCHHHHHHHh
Q 008437          365 ALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVP--GDPMWTEKSLAVLLNLAASAAGKE---EMNSTPGLVSGLATVL  437 (565)
Q Consensus       365 Al~aL~nLs~~~~nk~~iv~--~G~v~~Lv~Ll~~--~~~~~~e~al~~L~nLa~~~~~r~---~i~~~~g~v~~Lv~lL  437 (565)
                      ++.+|..++..-... .+..  ..+++.++..+.+  .+..++..++.++.++........   ....  -.+..+...+
T Consensus       150 ~l~~l~~i~~~~~~~-~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~--~i~~~l~~~~  226 (876)
T d1qgra_         150 TLEAIGYICQDIDPE-QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH--FIMQVVCEAT  226 (876)
T ss_dssp             HHHHHHHHHHHSCHH-HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH--HHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--HHHHHHHHHh
Confidence            999999887532211 1111  3466777774433  356778888888887765322111   1111  2345566666


Q ss_pred             hcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437          438 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR  498 (565)
Q Consensus       438 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~  498 (565)
                      ...++..+..|+.+|..++....+.....+...+.+.+........+.++..|...+..+.
T Consensus       227 ~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~  287 (876)
T d1qgra_         227 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  287 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            7788999999999999998765544334444555556666666777777777776655544

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.34  Score=51.14  Aligned_cols=278  Identities=10%  Similarity=0.051  Sum_probs=154.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhh-c-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc
Q 008437          216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG-A-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN  293 (565)
Q Consensus       216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~-~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~  293 (565)
                      +-++.++..+.+..+...+..|+..|..++.........+. . ...+..++..+.+  ...+..++..|+.+|.++...
T Consensus       134 eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~--~~~~~~v~~~a~~~l~~~~~~  211 (861)
T d2bpta1         134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQS--TETSKAVRLAALNALADSLIF  211 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHHHHHHHHHH
Confidence            45677788887765677788889999888754332211111 1 2233444444433  125678899999999887643


Q ss_pred             CchhhH-HHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhcc--CCchHHHH-HHhcCCCCHHHHHHHHH
Q 008437          294 NNRNKE-LMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGS--SHAVPFLV-ELCKGKTEHQCKLDALH  367 (565)
Q Consensus       294 ~~~nk~-~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv-~lL~~~~~~~~~~~Al~  367 (565)
                      -..+-. .......++.|...+..++.  +..+..++..+....  ...+..  ...+..+. ...++. ++.++..++.
T Consensus       212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~  288 (861)
T d2bpta1         212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY--YTFMKPYMEQALYALTIATMKSP-NDKVASMTVE  288 (861)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH--GGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred             HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHH
Confidence            222111 11122356677777776643  444666666654321  011111  12333333 334455 7888988888


Q ss_pred             HHHHhccCCC-----------------ChHHHHHcCchHHHhhccCC-------CChHHHHHHHHHHHHHhcCcccHHHH
Q 008437          368 ALYNLSTIPS-----------------NIPNLLSAGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAAGKEEM  423 (565)
Q Consensus       368 aL~nLs~~~~-----------------nk~~iv~~G~v~~Lv~Ll~~-------~~~~~~e~al~~L~nLa~~~~~r~~i  423 (565)
                      .+..++....                 +...-.-...++.+...+..       .+......+..+|..++......  +
T Consensus       289 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~  366 (861)
T d2bpta1         289 FWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH--I  366 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG--G
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchh--h
Confidence            8877753211                 11111112345555553321       22344555566666655422111  1


Q ss_pred             hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcc
Q 008437          424 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ  502 (565)
Q Consensus       424 ~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~  502 (565)
                      ..  -..+.+...+...+...++.|+.++..+..........-.-..+++.|+.++.+.++.+|..|..+|..+...-.
T Consensus       367 ~~--~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  443 (861)
T d2bpta1         367 LE--PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA  443 (861)
T ss_dssp             HH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred             hh--hhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhc
Confidence            11  122333344556788899999999998887554222222223468888888999999999999999988776543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.27  Score=52.30  Aligned_cols=279  Identities=13%  Similarity=0.075  Sum_probs=155.6

Q ss_pred             hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437          216 ERYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN  294 (565)
Q Consensus       216 e~i~~ll~~L~s~-~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~  294 (565)
                      +.++.+++.+.+. .+...+..++..|..+++.-......-.....++.++..+.+.  ..+..++..|+.++.++....
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~--~~~~~v~~~a~~~l~~~~~~~  205 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFT  205 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCc--CccHHHHHHHHHHHHHHHHHh
Confidence            4577888888664 2466787888999888753221111111144677788877652  245678888888887765321


Q ss_pred             chhh-HHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC-C-CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437          295 NRNK-ELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-D-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL  369 (565)
Q Consensus       295 ~~nk-~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~-~-~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL  369 (565)
                      ...- ......-.++.+...+..++.  +..+..+|..+.... + ....+ .....+.+...+.+. +......++..+
T Consensus       206 ~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~~~~~~~~~~  283 (876)
T d1qgra_         206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSD-IDEVALQGIEFW  283 (876)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCS-SHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence            1110 011111235556666666643  345666666664321 1 11111 123345555666666 777777777776


Q ss_pred             HHhccCC---------------------CChHHHHHcCchHHHhhccCC-------CChHHHHHHHHHHHHHhcCcccHH
Q 008437          370 YNLSTIP---------------------SNIPNLLSAGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAAGKE  421 (565)
Q Consensus       370 ~nLs~~~---------------------~nk~~iv~~G~v~~Lv~Ll~~-------~~~~~~e~al~~L~nLa~~~~~r~  421 (565)
                      ..++...                     ..-........++.+...+..       .+..+...+..+|..++.....  
T Consensus       284 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--  361 (876)
T d1qgra_         284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--
Confidence            6665311                     111111122334444443221       2233556666666666543211  


Q ss_pred             HHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437          422 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR  501 (565)
Q Consensus       422 ~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r  501 (565)
                      .++.  ..++.+.+.+.+.+...++.++.+|..+..........-.-..+++.++..+.+.++.++..|..++..+.+.-
T Consensus       362 ~~~~--~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  439 (876)
T d1qgra_         362 DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (876)
T ss_dssp             GGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             hhhh--hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHc
Confidence            1111  23344455556678888999998888877643221111122356788888888999999999999999887664


Q ss_pred             c
Q 008437          502 Q  502 (565)
Q Consensus       502 ~  502 (565)
                      .
T Consensus       440 ~  440 (876)
T d1qgra_         440 P  440 (876)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=1.2  Score=42.31  Aligned_cols=199  Identities=14%  Similarity=0.029  Sum_probs=141.6

Q ss_pred             hhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHH----HHh-cCchHHHHHHhcCCcHHHHHHHHHHH
Q 008437          255 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL----MLA-AGVIPLLEKMISNSNSHGAATALYLN  329 (565)
Q Consensus       255 i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~----i~~-~G~i~~Lv~lL~s~~~~~~A~aaL~n  329 (565)
                      +...+.+..|+.-|..    -+-+.+..++.+..++-......+..    +.. ..++..|+.-...++..-.+-..|..
T Consensus        65 ~~~~d~l~~Li~~L~~----L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLRE  140 (330)
T d1upka_          65 LYNSGLLSTLVADLQL----IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHSHHHHHHHTGGG----SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCC----CCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHH
Confidence            4446778888887766    67889999998888886543333322    222 23444444444444444445556666


Q ss_pred             hcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHc---CchHHHhhccCCCChHHHHH
Q 008437          330 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSA---GIISGLQSLAVPGDPMWTEK  405 (565)
Q Consensus       330 Ls~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~---G~v~~Lv~Ll~~~~~~~~e~  405 (565)
                      ...++.....|..+..+..+++.+..+ +-++..+|..++..|-..+ ......+..   -.+...-.|+.+++-.++..
T Consensus       141 cik~e~lak~iL~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         141 CIRHEPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHhhHHHHHHHHccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            666666666777777888999999988 8999999999999887544 333333432   24445555888899999999


Q ss_pred             HHHHHHHHhcCcccHHHH---hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 008437          406 SLAVLLNLAASAAGKEEM---NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG  458 (565)
Q Consensus       406 al~~L~nLa~~~~~r~~i---~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~  458 (565)
                      ++.+|..|-....+...|   +..+.-+..++.+|++.+..++-.|-.++--...+
T Consensus       220 SlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVAN  275 (330)
T d1upka_         220 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  275 (330)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcC
Confidence            999999999988888876   45556678888889999999999999888554443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.50  E-value=1.5  Score=42.19  Aligned_cols=182  Identities=20%  Similarity=0.129  Sum_probs=109.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc-------cCCCHHHHHHHHHHHHHhhc
Q 008437          220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFNLAV  292 (565)
Q Consensus       220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~-------~s~~~~~q~~A~~aL~nLa~  292 (565)
                      ..|..|.+....+...+.+..|+.-.+.++-.+..=+..+|+..|+.+|..-.       ...+...+...+.+|..+..
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn   85 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   85 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHHHhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc
Confidence            45666665534444445566665555555433322224667888888885321       11235677788899998863


Q ss_pred             cCchhhHHHH-hcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCC---CCc----------hhhccCCchHHHHHHhcCC
Q 008437          293 NNNRNKELML-AAGVIPLLEKMISNSN--SHGAATALYLNLSFLD---DAK----------PIIGSSHAVPFLVELCKGK  356 (565)
Q Consensus       293 ~~~~nk~~i~-~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~---~~k----------~~I~~~g~i~~Lv~lL~~~  356 (565)
                       +......++ ..+++..|+..|.++.  ++..|..+|..++...   +.-          ....+.+-..++++.|+.+
T Consensus        86 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~  164 (343)
T d2bnxa1          86 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  164 (343)
T ss_dssp             -SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             -cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence             344444444 5688999999998874  3555777776665432   211          1223456778999999877


Q ss_pred             CCHHHHHHHHHHHHHhccCCCC-------hHHHHHcCchHHHhhccCCCChHH
Q 008437          357 TEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPMW  402 (565)
Q Consensus       357 ~~~~~~~~Al~aL~nLs~~~~n-------k~~iv~~G~v~~Lv~Ll~~~~~~~  402 (565)
                      .+.+.+..++..|-.|....++       |..+..+|..+.+-.+-...++.+
T Consensus       165 ~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L  217 (343)
T d2bnxa1         165 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  217 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHH
Confidence            5677777666666666655442       344556777666555544444444

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.73  E-value=0.083  Score=48.67  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=14.2

Q ss_pred             HHHHHHHhcccccCCCHHHHHHHHH
Q 008437          261 VVALLRFLESAVCERNSYAQEIGAM  285 (565)
Q Consensus       261 i~~Lv~lL~s~~~s~~~~~q~~A~~  285 (565)
                      ++.|..++..    .++.++..|+.
T Consensus        68 ~~~L~~Ll~D----~d~~VR~~AA~   88 (233)
T d1lrva_          68 VEALTPLIRD----SDEVVRRAVAY   88 (233)
T ss_dssp             GGGGGGGTTC----SSHHHHHHHHT
T ss_pred             HHHHHHHhcC----CCHHHHHHHHH
Confidence            4566667766    67777777764

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.41  E-value=0.32  Score=44.52  Aligned_cols=160  Identities=10%  Similarity=-0.003  Sum_probs=82.2

Q ss_pred             hhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH-----HH
Q 008437          297 NKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL-----YN  371 (565)
Q Consensus       297 nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL-----~n  371 (565)
                      .|......-.+..|..+++.++......++. +|              ..+.|..++.++ +..++..++..|     ..
T Consensus        58 ~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~-~L--------------p~~~L~~L~~D~-d~~VR~~aa~~l~~~~L~~  121 (233)
T d1lrva_          58 RRAIAVRYSPVEALTPLIRDSDEVVRRAVAY-RL--------------PREQLSALMFDE-DREVRITVADRLPLEQLEQ  121 (233)
T ss_dssp             HHHHHHTTSCGGGGGGGTTCSSHHHHHHHHT-TS--------------CSGGGGGTTTCS-CHHHHHHHHHHSCTGGGGG
T ss_pred             HHHHHHhcCCHHHHHHHhcCCCHHHHHHHHH-Hc--------------CHHHHHHHhcCC-ChhHHHHHHhccCHHHHHH
Confidence            3444444455777777777777666666543 22              124566666666 777777766543     12


Q ss_pred             hccCCC--ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437          372 LSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV  449 (565)
Q Consensus       372 Ls~~~~--nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av  449 (565)
                      |..+++  .|..+.+....+.|..++.+.+..++..++.                 . -..+.|..++...++.++..++
T Consensus       122 Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~-----------------~-~~~~~L~~l~~D~d~~VR~~aa  183 (233)
T d1lrva_         122 MAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAK-----------------R-LPEESLGLMTQDPEPEVRRIVA  183 (233)
T ss_dssp             GTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHH-----------------H-SCGGGGGGSTTCSSHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHH-----------------h-cCHHHHHHHccCCCHHHHHHHH
Confidence            222221  2222333333333444444444444433322                 1 2345566666677777777777


Q ss_pred             HHH-----HHhhcCC-hHHHHHHHhCCcHHHHHHhhhcCChhHHHHHH
Q 008437          450 SCL-----FLLCNGN-EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQ  491 (565)
Q Consensus       450 ~~L-----~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~  491 (565)
                      ..|     ..+.... ...+..+.+. +.+.++..+.+.++.+++.|.
T Consensus       184 ~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~d~~VR~aA~  230 (233)
T d1lrva_         184 SRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALRELDEPDPEVRLAIA  230 (233)
T ss_dssp             HHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHHCCCCCHHHHHHHH
T ss_pred             HhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHHhCCCCHHHHHHHH
Confidence            543     2333332 2334444433 334455556677777777765

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.12  E-value=14  Score=34.61  Aligned_cols=161  Identities=10%  Similarity=-0.013  Sum_probs=119.5

Q ss_pred             hhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHH-----cCchHHHhhccCCCChHHHHHHHHHHHH
Q 008437          339 IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLS-----AGIISGLQSLAVPGDPMWTEKSLAVLLN  412 (565)
Q Consensus       339 ~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~-----~G~v~~Lv~Ll~~~~~~~~e~al~~L~n  412 (565)
                      .+...+.+..|+..|..= +-++++++..+..+|-... +.+.-.++     -.++..|+.-.  +++.+.-.+-.+|+.
T Consensus        64 e~~~~d~l~~Li~~L~~L-~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLRE  140 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCC-CCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHH
Confidence            344567889999999887 8999999999999997543 34433332     23334444322  345566778888999


Q ss_pred             HhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhC---CcHHHHHHhhhcCChhHHHH
Q 008437          413 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE---GVIPALVSISVNGSTRGRDK  489 (565)
Q Consensus       413 La~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~---G~v~~Lv~L~~~~s~~~k~~  489 (565)
                      ....+.-...|+.. ..+..+.+.+..++=++...|..++..|-..........+..   -.+..+-.|+.+++-.+|+.
T Consensus       141 cik~e~lak~iL~s-~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         141 CIRHEPLAKIILWS-EQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HHTSHHHHHHHHHS-GGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHhhHHHHHHHHcc-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            99988888888876 778888999999999999999999988666555555555554   35566677999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 008437          490 AQRLLMLFREQRQR  503 (565)
Q Consensus       490 A~~lL~~L~~~r~~  503 (565)
                      +.++|..+--.|.+
T Consensus       220 SlKLLgelLldr~N  233 (330)
T d1upka_         220 SLKLLGELLLDRHN  233 (330)
T ss_dssp             HHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHhhhhH
Confidence            99999986655544

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.51  E-value=7.4  Score=36.92  Aligned_cols=59  Identities=17%  Similarity=0.048  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 008437          400 PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG  458 (565)
Q Consensus       400 ~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~  458 (565)
                      ....-.++.+|..|..+..|...++.++.++..|+..|.+..+.++..|+.+|..+|..
T Consensus        70 ~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~  128 (343)
T d2bnxa1          70 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL  128 (343)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhc
Confidence            44567899999999999999999999999999999999999999999999999999964