Citrus Sinensis ID: 008449

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-----
MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLPLDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
ccccEEEEcccEEccccccccccccHHHHHHccccccccccccEEEEEEcccccHHHHHHHHHccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccccEEEEEEccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccEEEEEccccEEccccEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEEcccccc
cccEEEEEEcEEEccccccEEEccccEEEEcccccccccccccEEEEEEcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHHccccccEEEEEcccccccEEEEEEccccccEEEEEEEEcccccccccccccccccccEEEEEEEcccccccccccccccccccccccEEEEEEcHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcEEEEEEccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcc
MPAKTVVFtnvrkfdgdkfrwissGEYIQMSgragrrgidergicilmvddkmepsTAKMMLKGSADSLNSAFHLSYNMLLnqirceegspenllrnsfyqfqadhaipDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLkkdvrdivfspkyclpflqpgrfvciectrgddnspsfstedhqVTWGVVIEFEKVkgvyeddankkpedsnytvnILTRCvvskdgagkktlkivplkesgeplvvsVPISQIIKlssarlpmpkdllplqtRENMLKSTSEFLArnasglpldpeanmgirssSYQKLVRRIEALESLFdkheisksplIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAkgskfyeimeitpVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
mpaktvvftnvrkfdgdkfrwissgeyiqmsgragrrgideRGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDNSpsfstedhqvtWGVVIEFEKVKGvyeddankkpedsnytvniltrcvvskdgagkktlkivplkesgeplvvSVPISQIiklssarlpmpKDLLPLQTRENMLKSTSEFLARNAsglpldpeanmgirSSSYQKLVRRIEALESlfdkheisksplieqKLKVLHMKQELTAKiksikrqmrsstelafkdelkaRKRVLRrlgyatsddvvelKGKVACEISsaeeltltelIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIdvegfvnsfrpDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAksigetelEAKFEEAVSKIKRDIVFAASLYL
MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLPLDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
****TVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVD******************LNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIP**********************SLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRG*********EDHQVTWGVVIEFEKVKGVYED*********NYTVNILTRCVVSKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLS**************************************************KLVRRIEALESLFDKH*I****LIEQKLKVLHM**************************LKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQ*******ELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASL**
MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAI*D**KQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEF***************EDSNYTVNILTRCVVSKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMP******************FLARNASGLPLDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQE*************LLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLPLDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
*PAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVK************DSNYTVNILTRCVVSKD*AGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLPLDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
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MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAxxxxxxxxxxxxxxxxxxxxxEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLPLDPEANMGIRSSSxxxxxxxxxxxxxxxxxxxxxKSPLIEQKLKVLHMxxxxxxxxxxxxxxxxxxxxxAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query565 2.2.26 [Sep-21-2011]
P422851042 Superkiller viralicidic a yes no 0.973 0.527 0.493 1e-151
Q9CZU31040 Superkiller viralicidic a yes no 0.973 0.528 0.488 1e-150
O142321117 ATP-dependent RNA helicas yes no 0.975 0.493 0.441 1e-126
P470471073 ATP-dependent RNA helicas yes no 0.968 0.509 0.414 1e-115
Q232231026 mRNA transport homolog 4 yes no 0.961 0.529 0.380 1e-104
O137991030 Uncharacterized helicase no no 0.969 0.532 0.366 1e-100
Q154771246 Helicase SKI2W OS=Homo sa no no 0.955 0.433 0.284 1e-53
O598011213 Putative ATP-dependent RN no no 0.438 0.204 0.35 6e-31
P352071287 Antiviral helicase SKI2 O no no 0.415 0.182 0.334 1e-26
Q10701906 Probable helicase HelY OS yes no 0.212 0.132 0.376 1e-15
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3 Back     alignment and function desciption
 Score =  536 bits (1382), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 280/567 (49%), Positives = 375/567 (66%), Gaps = 17/567 (2%)

Query: 1    MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
            MPA+TV+FTN RKFDG  FRWISSGEYIQMSGRAGRRG+D+RGI ILMVD+KM P+  K 
Sbjct: 491  MPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ 550

Query: 61   MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEE 120
            +LKGSAD LNSAFHL+YNM+LN +R EE +PE +L  SFYQFQ   AIP + ++ K  EE
Sbjct: 551  LLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEE 610

Query: 121  ERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDN 180
            + + +VI  E+S+  YY + QQ   L K++ + +  PKYCLPFLQPGR V ++   GDD 
Sbjct: 611  QYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVK-NEGDD- 668

Query: 181  SPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVV-SKDGAGKKTL 239
                        WGVV+ F K   V     N    D  Y V +L RC   S   +  +  
Sbjct: 669  ----------FGWGVVVNFSKKSNV---KPNSGELDPLYVVEVLLRCSKESLKNSATEAA 715

Query: 240  KIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP 299
            K     E GE  VV V +  +  +SS RL +PKDL P+  R+++LKS  E   R   G+P
Sbjct: 716  KPAKPDEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIP 775

Query: 300  L-DPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSI 358
            L DP  +MGI+    +K+++++EA E     H +   P +E    +   K ++   IKS 
Sbjct: 776  LLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSA 835

Query: 359  KRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNG 418
            KR+++ +  +   DELK RKRVLRRLG+ATS DV+E+KG+VACEISSA+EL LTE++FNG
Sbjct: 836  KRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNG 895

Query: 419  VLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDV 478
            +  D+  E+  +LLSCFV+QE   +  K  E+L     Q+Q+ A+R+AKV  E K++ID 
Sbjct: 896  LFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDE 955

Query: 479  EGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIG 538
            E +++SF+P +M+ VY WA G+ F  I ++T VFEGS+IR +RRLEE+L+Q+  AAK+IG
Sbjct: 956  ETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIG 1015

Query: 539  ETELEAKFEEAVSKIKRDIVFAASLYL 565
             TELE KF E ++KIKRDIVFAASLYL
Sbjct: 1016 NTELENKFAEGITKIKRDIVFAASLYL 1042
May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1 Back     alignment and function description
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1 Back     alignment and function description
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1 Back     alignment and function description
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1 Back     alignment and function description
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1 Back     alignment and function description
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3 Back     alignment and function description
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1 Back     alignment and function description
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI2 PE=1 SV=2 Back     alignment and function description
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query565
255573838 991 helicase, putative [Ricinus communis] gi 0.998 0.569 0.849 0.0
224129500 1012 predicted protein [Populus trichocarpa] 0.998 0.557 0.833 0.0
225435997 994 PREDICTED: superkiller viralicidic activ 0.996 0.566 0.825 0.0
449505096 993 PREDICTED: LOW QUALITY PROTEIN: superkil 0.998 0.567 0.805 0.0
449445443 994 PREDICTED: superkiller viralicidic activ 0.998 0.567 0.805 0.0
356527455 981 PREDICTED: superkiller viralicidic activ 0.998 0.574 0.797 0.0
15218905 988 RNA helicase [Arabidopsis thaliana] gi|5 0.998 0.570 0.784 0.0
297837559 988 hypothetical protein ARALYDRAFT_893587 [ 0.998 0.570 0.784 0.0
357507885 983 Helicase, putative [Medicago truncatula] 0.998 0.573 0.772 0.0
242091672 960 hypothetical protein SORBIDRAFT_10g00050 0.989 0.582 0.761 0.0
>gi|255573838|ref|XP_002527838.1| helicase, putative [Ricinus communis] gi|223532762|gb|EEF34541.1| helicase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  992 bits (2565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/565 (84%), Positives = 526/565 (93%), Gaps = 1/565 (0%)

Query: 1   MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
           MPAKTVVF+NVRKFDGDKFRW+SSGEYIQMSGRAGRRGIDERGICILMVD+K+EPSTAKM
Sbjct: 428 MPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICILMVDEKLEPSTAKM 487

Query: 61  MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEE 120
           MLKGSADSLNSAFHLSYNMLLNQ+RCE+G PENLLRNSFYQFQAD AIPDLEKQ KVLE+
Sbjct: 488 MLKGSADSLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFYQFQADRAIPDLEKQVKVLED 547

Query: 121 ERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDN 180
           ER+SM+IEEEDSLKNYY+L+QQYKSLKKD RDIVFSPKYCLPFLQPGR VCI+C+  D+N
Sbjct: 548 ERNSMIIEEEDSLKNYYDLIQQYKSLKKDARDIVFSPKYCLPFLQPGRIVCIQCSGVDEN 607

Query: 181 SPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDGAGKKTLK 240
           SPSFS EDH VTWGVVI F++VK   EDDA++KPEDSNYTV++LTRCVVS+DG  +K+ K
Sbjct: 608 SPSFSVEDH-VTWGVVISFDRVKSFSEDDASRKPEDSNYTVDVLTRCVVSRDGVAEKSFK 666

Query: 241 IVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLPL 300
           IVPLKE GEPLVVS+PIS+I  LSSARL M KDLLPL+ REN LK   EFL+R  +GLPL
Sbjct: 667 IVPLKEPGEPLVVSIPISEITSLSSARLYMAKDLLPLEVRENTLKQVIEFLSRKPTGLPL 726

Query: 301 DPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKR 360
           DPEA+M I+SSSY+K V RIEALE+LF+KHEI+KSPLI+QKLKVLH KQELTAKIKS+K+
Sbjct: 727 DPEADMKIKSSSYKKAVWRIEALENLFEKHEIAKSPLIDQKLKVLHKKQELTAKIKSVKK 786

Query: 361 QMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVL 420
            +RSST LAFKDELKARKRVLRRLGY TSDDV+ELKGKVACEISSA+ELTLTEL+FNGVL
Sbjct: 787 TLRSSTALAFKDELKARKRVLRRLGYVTSDDVLELKGKVACEISSADELTLTELMFNGVL 846

Query: 421 KDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEG 480
           KD+KVEEMVSLLSCFVWQEKLQDA KPREEL++LFTQLQDTARRVAK+QLECKVQIDVE 
Sbjct: 847 KDIKVEEMVSLLSCFVWQEKLQDAGKPREELDMLFTQLQDTARRVAKLQLECKVQIDVED 906

Query: 481 FVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGET 540
           FV+SFRPDIMEAVYAWAKGSKFYEIMEIT VFEGSLIRAIRRLEEVLQQLI AAKSIGET
Sbjct: 907 FVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIQAAKSIGET 966

Query: 541 ELEAKFEEAVSKIKRDIVFAASLYL 565
           ELEAKFEEAVSKIKRDIVFAASLYL
Sbjct: 967 ELEAKFEEAVSKIKRDIVFAASLYL 991

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224129500|ref|XP_002328732.1| predicted protein [Populus trichocarpa] gi|222839030|gb|EEE77381.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225435997|ref|XP_002273102.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449505096|ref|XP_004162375.1| PREDICTED: LOW QUALITY PROTEIN: superkiller viralicidic activity 2-like 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445443|ref|XP_004140482.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356527455|ref|XP_003532326.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|15218905|ref|NP_176185.1| RNA helicase [Arabidopsis thaliana] gi|5080810|gb|AAD39319.1|AC007258_8 Very similar to helicases [Arabidopsis thaliana] gi|51971869|dbj|BAD44599.1| hypothetical protein [Arabidopsis thaliana] gi|332195495|gb|AEE33616.1| RNA helicase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297837559|ref|XP_002886661.1| hypothetical protein ARALYDRAFT_893587 [Arabidopsis lyrata subsp. lyrata] gi|297332502|gb|EFH62920.1| hypothetical protein ARALYDRAFT_893587 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357507885|ref|XP_003624231.1| Helicase, putative [Medicago truncatula] gi|355499246|gb|AES80449.1| Helicase, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|242091672|ref|XP_002436326.1| hypothetical protein SORBIDRAFT_10g000500 [Sorghum bicolor] gi|241914549|gb|EER87693.1| hypothetical protein SORBIDRAFT_10g000500 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query565
TAIR|locus:2026001988 MTR4 "homolog of yeast MTR4" [ 0.998 0.570 0.784 1.1e-238
UNIPROTKB|E2RCI51042 SKIV2L2 "Uncharacterized prote 0.969 0.525 0.500 5.6e-139
UNIPROTKB|F5H7E2941 SKIV2L2 "Superkiller viralicid 0.969 0.582 0.497 1.9e-138
UNIPROTKB|P422851042 SKIV2L2 "Superkiller viralicid 0.969 0.525 0.497 1.9e-138
MGI|MGI:19194481040 Skiv2l2 "superkiller viralicid 0.969 0.526 0.492 3.6e-137
UNIPROTKB|F1SLL61046 SKIV2L2 "Uncharacterized prote 0.973 0.525 0.494 4.6e-137
ZFIN|ZDB-GENE-040426-28541034 skiv2l2 "superkiller viralicid 0.968 0.529 0.483 1.1e-135
UNIPROTKB|F1N9931031 F1N993 "Uncharacterized protei 0.973 0.533 0.467 6.4e-131
FB|FBgn00019861055 l(2)35Df "lethal (2) 35Df" [Dr 0.966 0.517 0.429 8.8e-118
POMBASE|SPAC6F12.16c1117 mtr4 "ATP-dependent RNA helica 0.975 0.493 0.445 9.1e-116
TAIR|locus:2026001 MTR4 "homolog of yeast MTR4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2301 (815.1 bits), Expect = 1.1e-238, P = 1.1e-238
 Identities = 443/565 (78%), Positives = 510/565 (90%)

Query:     1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
             MPAKTVVFTNVRKFDGDKFRW+SSGEYIQMSGRAGRRGID+RGICILMVD+KMEP+ AK 
Sbjct:   425 MPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPAVAKS 484

Query:    61 MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEE 120
             MLKGSADSLNSAFHLSYNMLLNQ+RCEEG PENLLRNSF+QFQAD AIPDLEKQ K LEE
Sbjct:   485 MLKGSADSLNSAFHLSYNMLLNQLRCEEGDPENLLRNSFFQFQADRAIPDLEKQIKSLEE 544

Query:   121 ERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDN 180
             ERDS+VIEEE+SLKNYYNL+ QYKSLKKD+R+IVF+PKYCLPFL P R VC++CT  D+ 
Sbjct:   545 ERDSLVIEEEESLKNYYNLILQYKSLKKDIREIVFTPKYCLPFLLPNRAVCLDCTNDDEE 604

Query:   181 SPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDGAGKKTLK 240
               SFS ED Q TWGV+++F KVK + EDD +++PED+NYTV++LTRC+VSKDG GKK +K
Sbjct:   605 PQSFSIED-QDTWGVIMKFNKVKSLSEDDDSRRPEDANYTVDVLTRCMVSKDGVGKKKVK 663

Query:   241 IVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLPL 300
              VP+KE GEP+VV+VP+SQI  LSSA + +PKDL+PL+ REN LK  SE L+R+  G+PL
Sbjct:   664 AVPIKERGEPVVVTVPLSQIKSLSSAIMNIPKDLVPLEARENALKKVSELLSRHPDGIPL 723

Query:   301 DPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKR 360
             DPE +M I+SSSY+K VRR+EALE+LF+KH+I+KSPLI +KLKVL MK+EL AKIKS+K+
Sbjct:   724 DPEVDMKIKSSSYKKTVRRLEALENLFEKHKIAKSPLITEKLKVLQMKEELIAKIKSLKK 783

Query:   361 QMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVL 420
              +RSST LAFKDELKARKRVLRRLGY TSD+VVELKGKVACEISSAEELTLTEL+F+G+ 
Sbjct:   784 TVRSSTALAFKDELKARKRVLRRLGYITSDNVVELKGKVACEISSAEELTLTELMFSGIF 843

Query:   421 KDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEG 480
             KD KVEE+VSLLSCFVW+E+L DA+KPREEL+LLF QLQDTARRVA+VQL+CKV+IDVE 
Sbjct:   844 KDAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAEVQLDCKVEIDVES 903

Query:   481 FVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGET 540
             FV SFRPDIMEAVYAWAKGSKFYE+MEI  VFEGSLIRAIRR+EEVLQQLI+AAKSIGET
Sbjct:   904 FVQSFRPDIMEAVYAWAKGSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAAKSIGET 963

Query:   541 ELEAKFEEAVSKIKRDIVFAASLYL 565
             +LEAK EEAVSKIKRDIVFAASLYL
Sbjct:   964 QLEAKLEEAVSKIKRDIVFAASLYL 988
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA
GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA
GO:0006364 "rRNA processing" evidence=IMP
GO:0031125 "rRNA 3'-end processing" evidence=IMP
GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0000741 "karyogamy" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0006606 "protein import into nucleus" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
GO:0010212 "response to ionizing radiation" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
UNIPROTKB|E2RCI5 SKIV2L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F5H7E2 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P42285 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1919448 Skiv2l2 "superkiller viralicidic activity 2-like 2 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SLL6 SKIV2L2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2854 skiv2l2 "superkiller viralicidic activity 2-like 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N993 F1N993 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0001986 l(2)35Df "lethal (2) 35Df" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
POMBASE|SPAC6F12.16c mtr4 "ATP-dependent RNA helicase, TRAMP complex subunit Mtr4" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.86.170.1
hypothetical protein (934 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.86.17.1
hypothetical protein (573 aa)
   •    0.424
gw1.I.4832.1
hypothetical protein (422 aa)
   •  • 0.405
estExt_Genewise1_v1.C_LG_VII2715
hypothetical protein (380 aa)
   •    0.403
eugene3.00640202
hypothetical protein (1181 aa)
   •    0.402

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query565
COG45811041 COG4581, COG4581, Superfamily II RNA helicase [DNA 1e-104
pfam13234266 pfam13234, rRNA_proc-arch, rRNA-processing arch do 9e-95
pfam08148178 pfam08148, DSHCT, DSHCT (NUC185) domain 1e-70
cd13154129 cd13154, KOW_Mtr4, KOW_Mtr4 is an inserted domain 2e-16
COG1204766 COG1204, COG1204, Superfamily II helicase [General 1e-06
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 5e-04
PRK01172674 PRK01172, PRK01172, ski2-like helicase; Provisiona 0.001
PRK02362737 PRK02362, PRK02362, ski2-like helicase; Provisiona 0.002
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  336 bits (864), Expect = e-104
 Identities = 185/581 (31%), Positives = 289/581 (49%), Gaps = 41/581 (7%)

Query: 1    MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMV-DDKMEPSTAK 59
            MPA+TVVFT++ KFDG+  RW+S GEY QMSGRAGRRG+D  G  I++    + EPS A 
Sbjct: 486  MPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAA 545

Query: 60   MMLKGSADSLNSAFHLSYNMLLNQIRCEEGS-PENLLRNSFYQFQADHAIPDLEKQAKVL 118
             +  G  D L S F LSYNM+LN +R E     E+LL  SF QFQ   ++P++ ++ + L
Sbjct: 546  GLASGKLDPLRSQFRLSYNMILNLLRVEGLQTAEDLLERSFAQFQNSRSLPEIVEKLERL 605

Query: 119  EEERDSMVIEEEDS-LKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRG 177
            E+E + +  E   +   +   L   Y+ L+K + + +      L  L+ GR V I+   G
Sbjct: 606  EKELNDIATELFGTDENDAPKLSLDYEKLRKKLNEEMRLQAAGLRALRKGRVVQIK--DG 663

Query: 178  DDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNI----LTRCVVSKDG 233
                           WG +++    K       + +   +            R +V    
Sbjct: 664  LAAL----------FWGRLLK--LTKRYTTKLTDHELYLAVLVEPNADFSFPRPLVK--- 708

Query: 234  AGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLAR 293
            A     +           +  V +    ++    L MP+ LL  Q +    +        
Sbjct: 709  AMPHMNRESRWLVKILFRISFVYLLNATEILELILTMPRRLLSRQGKLRRGE---PSNEA 765

Query: 294  NASGLP-----LDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMK 348
             A+GL      L+    M I+       + ++        ++ +      E+ ++   + 
Sbjct: 766  IAAGLDGNEKILENVVEMKIQVPELTVSLLKLRFGRYHLSENPLMNFDGAERLIENELLL 825

Query: 349  QELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEE 408
             +L A+I+ +   + +   L+F D+ K  + VL++LG+   + VV +KG+VA EISS +E
Sbjct: 826  SDLQAEIEDLSSSIEA---LSFLDDYKTLQEVLKKLGFIEDNAVVLIKGRVAAEISSEDE 882

Query: 409  LTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREEL-ELLF---TQLQDTARR 464
            L LTELIF+G   D++ EE+ +LLS FV++EK  D +    E+   L     +L + AR+
Sbjct: 883  LLLTELIFSGEFNDLEPEELAALLSAFVFEEKTDDGTAEAPEITPALRDALLRLLELARK 942

Query: 465  VAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLE 524
            + K Q   +++I  E  +N F   +ME VY WA+G  F +I  +T + EGS +R  RRL 
Sbjct: 943  LNKDQNSSQIEIYPE--LNDFSVGLMEVVYEWARGLSFADICGLTSLLEGSFVRIFRRLR 1000

Query: 525  EVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 565
            E+L+QL  AA  IG  ELE K   A+ +I+RDIVF  SLYL
Sbjct: 1001 ELLRQLRKAASVIGNPELEEKAYRAIQEIRRDIVFVDSLYL 1041

Length = 1041
>gnl|CDD|221998 pfam13234, rRNA_proc-arch, rRNA-processing arch domain Back     alignment and domain information
>gnl|CDD|219729 pfam08148, DSHCT, DSHCT (NUC185) domain Back     alignment and domain information
>gnl|CDD|240518 cd13154, KOW_Mtr4, KOW_Mtr4 is an inserted domain in Mtr4 globular domain Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 565
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 100.0
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 100.0
COG45811041 Superfamily II RNA helicase [DNA replication, reco 100.0
PF08148180 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 100.0
PF13234268 rRNA_proc-arch: rRNA-processing arch domain; PDB: 100.0
PRK02362737 ski2-like helicase; Provisional 99.45
PRK01172674 ski2-like helicase; Provisional 99.4
PRK00254720 ski2-like helicase; Provisional 99.37
COG1204766 Superfamily II helicase [General function predicti 99.25
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 99.06
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 98.91
COG1202830 Superfamily II helicase, archaea-specific [General 98.87
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 98.74
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 98.72
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 98.18
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 96.99
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 96.07
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 95.68
smart0049082 HELICc helicase superfamily c-terminal domain. 95.63
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 95.34
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 95.09
PRK13767876 ATP-dependent helicase; Provisional 94.88
PTZ00424401 helicase 45; Provisional 94.58
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 94.51
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 94.5
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 93.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 92.83
TIGR00643630 recG ATP-dependent DNA helicase RecG. 92.11
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 92.03
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 91.68
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 91.66
PF12029461 DUF3516: Domain of unknown function (DUF3516); Int 91.45
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 91.37
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 91.25
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 91.19
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 91.11
PTZ00110545 helicase; Provisional 90.53
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 90.0
PRK05298652 excinuclease ABC subunit B; Provisional 89.56
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 88.57
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 88.57
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 88.18
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 87.59
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 87.07
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 87.0
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 86.17
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 85.64
PHA02653675 RNA helicase NPH-II; Provisional 84.55
COG1202830 Superfamily II helicase, archaea-specific [General 84.54
PRK106891147 transcription-repair coupling factor; Provisional 80.7
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=8.4e-143  Score=1142.90  Aligned_cols=552  Identities=56%  Similarity=0.865  Sum_probs=526.4

Q ss_pred             CCccEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHhcCCCCcccccCCCChHHH
Q 008449            1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNML   80 (565)
Q Consensus         1 mPAr~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~~~~~~~l~S~f~~~~~~i   80 (565)
                      ||||||||++.+||||+.|||+++|||+||+|||||||+|+.|.||+|.+..++++.++.|+.|.++||+|+||+||||+
T Consensus       488 MPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMi  567 (1041)
T KOG0948|consen  488 MPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMI  567 (1041)
T ss_pred             CcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 008449           81 LNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYC  160 (565)
Q Consensus        81 L~l~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~e~~i~~Y~~l~~~l~~~~~~~~~~~~~~~~~  160 (565)
                      |||+|++++++++|+++||+|||+.+.+|.+++++.+++++++.+.+++|..+.+|++++.++.++++++++.+.+|++|
T Consensus       568 LNLlRvEei~pe~~l~~SF~QFQ~~~~~P~i~~kl~~~~~~~~~i~i~~E~~v~~yh~l~~ql~~~~k~i~~~~~~P~~~  647 (1041)
T KOG0948|consen  568 LNLLRVEEISPEYMLERSFHQFQNYKALPDIEEKLKQLEEELDSINIPNEEEVKEYHDLELQLEKYGKDIREVITHPKYC  647 (1041)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcEEEEecCCCCCCCCCCCCCCccceEEEEEeeeeccCcCCCCCCCCCCCCCceEEEEeeccccCC-CCCCCcc
Q 008449          161 LPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKD-GAGKKTL  239 (565)
Q Consensus       161 ~~~L~~GRlV~i~~~~~~~~~~~~~~~~~~~~~gvvv~~~~~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~-~~~~~~~  239 (565)
                      ++||+|||+|.|..+            +.+|+|||++++.+.++..+++. ...+.+.|+|+++++|..... .......
T Consensus       648 l~fLq~GRlV~v~~g------------~~d~~WGvvv~f~k~~~~~~~~~-~~~p~e~Y~vdvll~~~~~~~~~~~~~~~  714 (1041)
T KOG0948|consen  648 LPFLQPGRLVKVKVG------------GDDFFWGVVVNFIKRKNSSKNSD-QVGPHESYIVDVLLHCSTESSPVGAKKVN  714 (1041)
T ss_pred             cccccCCceEEEecC------------CCCCceeEEEEEEeccCCCCCcc-ccCCCcceEEEEEeeeeccccccccCcCC
Confidence            999999999999998            67899999999988765443321 122334899999999962211 1112223


Q ss_pred             cccCCCCCCCeEEEeecccceecccceeeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCC-CCcccccCCCChHHHHHHH
Q 008449          240 KIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRSSSYQKLVR  318 (565)
Q Consensus       240 ~p~~~~~~~~~~~~~v~~~~i~~is~~~~~~~~~~~~~~~r~~~~~~l~e~~~~~~~~~p-l~~~~~~~i~~~~~~~~~~  318 (565)
                      .|+.+++.+.|.++|+.++.|..||++|+++|+++++.++|..+.+.++++.++||+|+| +||++||+|.+.++.++.+
T Consensus       715 ~p~~~~ek~~~~vvpv~l~~i~~is~~r~~iP~dl~~~d~r~~~~k~v~e~~~rfp~gip~LdPv~dM~I~~~~~~~~~~  794 (1041)
T KOG0948|consen  715 VPPRPNEKGEMEVVPVLLTLIDAISSIRLYIPKDLRSVDARLSVLKAVQEVKSRFPDGIPLLDPVKDMNIKDVEFKKLVK  794 (1041)
T ss_pred             CCCCCCCCCceEEEeeeHHHHhhhhHHHhcCcccccCcchHHHHHHHHHHHHHhcCCCCCCcChhhccCccchHHHHHHH
Confidence            455577899999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhchhcchhHHHHHHHHHHHhHhCCccCCCccchhhh
Q 008449          319 RIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGK  398 (565)
Q Consensus       319 ~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~~~~e~~~~~~VL~~Lgyid~~~~vt~KGr  398 (565)
                      +++.|+.++.+||.|+.|+.++.|+.+.++..|..++++++.++++++...+++|+++|++|||||||++.+++|.+|||
T Consensus       795 k~e~lE~~l~~hp~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~ddvie~KGr  874 (1041)
T KOG0948|consen  795 KIESLEARLESHPLHKSSELEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDDVIELKGR  874 (1041)
T ss_pred             HHHHHHHhhccCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCchhHHHHHHHhCCCCCCChHHHHHhhhcceeeccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Q 008449          399 VACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDV  478 (565)
Q Consensus       399 vAceI~s~dELllTEllf~g~f~~L~p~eiaAlLS~fV~qek~~~~~~l~~~L~~~~~~l~~ia~~I~~v~~~~~l~~~~  478 (565)
                      |||||+|+|||++|||||+|.|++|+|+|+||||||||||+|+++.+++.++|+.++.+|++.|++|++|+.+|++++++
T Consensus       875 vACEIsSgDELlLTEliFnG~Fndl~~eq~aaLLSCfVf~eks~e~~~l~~el~~~l~~lqe~ArrIAkVs~ecKlEide  954 (1041)
T KOG0948|consen  875 VACEISSGDELLLTELIFNGIFNDLPVEQAAALLSCFVFQEKSSEAPKLKEELAGPLRQLQESARRIAKVSKECKLEIDE  954 (1041)
T ss_pred             EEEEecccchHHHHHHHHhccccCCCHHHHHHHHhheeehhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccccCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCcc
Q 008449          479 EGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIV  558 (565)
Q Consensus       479 ~~~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrqv~~Aa~~iGn~~L~~k~e~a~~~IkRDIV  558 (565)
                      ++|+++|+|+||+|||+||+|++|++||++||+||||||||+|||+||||||++||++|||++|++||++|+.+||||||
T Consensus       955 ~~Yv~sFkp~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnteLe~Kf~~~~~~ikRDIV 1034 (1041)
T KOG0948|consen  955 EDYVESFKPELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNTELENKFEEAIKKIKRDIV 1034 (1041)
T ss_pred             HHHHHhcChHHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCC
Q 008449          559 FAASLYL  565 (565)
Q Consensus       559 fa~SLYl  565 (565)
                      ||+||||
T Consensus      1035 FAaSLYL 1041 (1041)
T KOG0948|consen 1035 FAASLYL 1041 (1041)
T ss_pred             ehhhccC
Confidence            9999997

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [] Back     alignment and domain information
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query565
2xgj_A1010 Structure Of Mtr4, A Dexh Helicase Involved In Nucl 1e-117
3l9o_A1108 Crystal Structure Of Mtr4, A Co-Factor Of The Nucle 1e-117
4a4z_A997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 4e-50
2p6r_A702 Crystal Structure Of Superfamily 2 Helicase Hel308 6e-07
2va8_A715 Dna Repair Helicase Hel308 Length = 715 2e-04
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 Back     alignment and structure 
Iteration: 1

 Score =  417 bits (1073), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/581 (41%), Positives = 357/581 (61%), Gaps = 34/581 (5%)
Query: 1    MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
            MPAKTVVFT+VRK+DG +FRW+S GEYIQMSGRAGRRG+D+RGI I+M+D+KMEP  AK 
Sbjct: 448  MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507
Query: 61   MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEE 120
            M+KG AD L+SAFHL YNM+LN +R E  SPE +L +SF+QFQ   ++P +EK+   L++
Sbjct: 508  MVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKK 567
Query: 121  ERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDN 180
            + D + +E+E+++K Y+ + Q  K  ++DVR +V  P   L FLQPGR V I    G DN
Sbjct: 568  DFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVN-GKDN 626
Query: 181  SPSFSTEDHQVTWGVVIEFEK------VKGVYEDDANKKPEDSNYTVNILTRCVVSKDGA 234
                        WG V++F K         VY D         +Y VN++   +      
Sbjct: 627  ----------YGWGAVVDFAKRINKRNPSAVYTDH-------ESYIVNVVVNTMYIDSPV 669
Query: 235  G-----KKTLK--IVPLKESGEPLVVSVPIS--QIIKLSSARLPMPKDLLPLQTRENMLK 285
                    TL   I P +E  + +   +PI+   I  + + RL MPKD+     +E + K
Sbjct: 670  NLLKPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGK 729
Query: 286  STSEFLARNASGLP-LDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKV 344
            S  E   R   G+P LDP  NM I    + KL+++I+ L +    + ++ S  +E+    
Sbjct: 730  SLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGK 789
Query: 345  LHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEIS 404
               K +L   +K +KR++  S  +   D+L+ RKRVLRRLG+ T +D++ELKG+VACEIS
Sbjct: 790  YSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEIS 849
Query: 405  SAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARR 464
            S +EL LTELIFNG   ++K E+  +LLSCF +QE+ ++A + + EL      +++ A +
Sbjct: 850  SGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAK 909
Query: 465  VAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLE 524
            +AK+  + K+++  + +V SFR ++ME VY W +G+ F +I ++T V+EGSLIR  +RLE
Sbjct: 910  IAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLE 969
Query: 525  EVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 565
            E++++L+  A +IG + L+ K E  +  I RDIV A SLYL
Sbjct: 970  ELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1010
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 Back     alignment and structure
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 Back     alignment and structure
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query565
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 1e-175
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 1e-171
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 1e-164
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 3e-24
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 4e-20
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 6e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 7e-06
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure
 Score =  521 bits (1343), Expect = e-175
 Identities = 231/575 (40%), Positives = 352/575 (61%), Gaps = 22/575 (3%)

Query: 1    MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
            MPAKTVVFT+VRK+DG +FRW+S GEYIQMSGRAGRRG+D+RGI I+M+D+KMEP  AK 
Sbjct: 448  MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507

Query: 61   MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEE 120
            M+KG AD L+SAFHL YNM+LN +R E  SPE +L +SF+QFQ   ++P +EK+   L++
Sbjct: 508  MVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKK 567

Query: 121  ERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDN 180
            + D + +E+E+++K Y+ + Q  K  ++DVR +V  P   L FLQPGR V I     D+ 
Sbjct: 568  DFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDNY 627

Query: 181  SPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDGAGKKT-- 238
                        WG V++F K +    + +    +  +Y VN++   +            
Sbjct: 628  -----------GWGAVVDFAK-RINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPF 675

Query: 239  -------LKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFL 291
                   ++     E     V+ + +  I  + + RL MPKD+     +E + KS  E  
Sbjct: 676  NPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVN 735

Query: 292  ARNASGLP-LDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQE 350
             R   G+P LDP  NM I    + KL+++I+ L +    + ++ S  +E+       K +
Sbjct: 736  RRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHD 795

Query: 351  LTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELT 410
            L   +K +KR++  S  +   D+L+ RKRVLRRLG+ T +D++ELKG+VACEISS +EL 
Sbjct: 796  LHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELL 855

Query: 411  LTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQL 470
            LTELIFNG   ++K E+  +LLSCF +QE+ ++A + + EL      +++ A ++AK+  
Sbjct: 856  LTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMK 915

Query: 471  ECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQL 530
            + K+++  + +V SFR ++ME VY W +G+ F +I ++T V+EGSLIR  +RLEE++++L
Sbjct: 916  DSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKEL 975

Query: 531  ILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 565
            +  A +IG + L+ K E  +  I RDIV A SLYL
Sbjct: 976  VDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1010
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query565
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.33
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.25
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 99.12
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.05
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 98.99
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 98.19
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 96.59
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 96.53
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 96.4
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 96.16
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 96.03
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 95.89
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 95.89
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 95.84
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 95.8
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 95.66
1yks_A440 Genome polyprotein [contains: flavivirin protease 95.65
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 95.57
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 95.51
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 95.38
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 95.32
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 95.28
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 95.14
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 94.78
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 94.61
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 94.55
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 93.55
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 94.52
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 94.41
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 94.33
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 94.31
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 94.27
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 94.02
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 93.92
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 93.79
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 93.32
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 93.07
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 92.96
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 92.87
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 92.85
4ddu_A1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 92.32
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 92.29
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 92.16
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 91.73
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 91.24
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 90.97
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 89.86
1gku_B1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 88.56
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 88.22
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 87.24
3h1t_A590 Type I site-specific restriction-modification syst 86.2
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 85.91
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 85.78
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 83.01
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 82.01
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 81.57
4gl2_A699 Interferon-induced helicase C domain-containing P; 81.47
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=5.1e-112  Score=1004.78  Aligned_cols=553  Identities=42%  Similarity=0.711  Sum_probs=479.1

Q ss_pred             CCccEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHhcCCCCcccccCCCChHHH
Q 008449            1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNML   80 (565)
Q Consensus         1 mPAr~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~~~~~~~l~S~f~~~~~~i   80 (565)
                      ||+.+|||....+|||.+++++++++|.||+|||||+|.|..|.||+++++..++..+.+++.+.++|+.|+|+++|||+
T Consensus       546 iP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~i  625 (1108)
T 3l9o_A          546 MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMI  625 (1108)
T ss_dssp             C--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_pred             CCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHH
Confidence            79999999999999999999999999999999999999999999999999887889999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 008449           81 LNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYC  160 (565)
Q Consensus        81 L~l~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~e~~i~~Y~~l~~~l~~~~~~~~~~~~~~~~~  160 (565)
                      ||+++++++++++|+++||++||+...++.+++++++++++++.+....+.++.+|+++++++...++.++..+.++.++
T Consensus       626 lnll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~  705 (1108)
T 3l9o_A          626 LNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANA  705 (1108)
T ss_dssp             HHHHHSTTCCHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            99999999999999999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             cCCCCCCcEEEEecCCCCCCCCCCCCCCccceEEEEEeeeeccCcCCCCCCCCCCCCCceEEEEeeccccCCCC------
Q 008449          161 LPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDGA------  234 (565)
Q Consensus       161 ~~~L~~GRlV~i~~~~~~~~~~~~~~~~~~~~~gvvv~~~~~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~------  234 (565)
                      ++||+|||||.|+.+.           +.+||||||+++.+..+..++ .+..+....|+++||+.|....+..      
T Consensus       706 ~~~l~~G~~v~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  773 (1108)
T 3l9o_A          706 LSFLQPGRLVEISVNG-----------KDNYGWGAVVDFAKRINKRNP-SAVYTDHESYIVNVVVNTMYIDSPVNLLKPF  773 (1108)
T ss_dssp             HHHCCTTEEEEECCTT-----------CCEEEEEEEEEECCCC------CCSSSSEEEEEECCCSTTCCSCCCSSCTTTT
T ss_pred             HhhCCCCCEEEEecCC-----------CcccceEEEEecccccccccc-cccCCCCCceeEEEEeccccccccccccccc
Confidence            9999999999998752           367999999998654211110 0011223458899998885211000      


Q ss_pred             ---CCCcccccCCCCCCCeEEEeecccceecccceeeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCC-CCcccccCCCC
Q 008449          235 ---GKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRS  310 (565)
Q Consensus       235 ---~~~~~~p~~~~~~~~~~~~~v~~~~i~~is~~~~~~~~~~~~~~~r~~~~~~l~e~~~~~~~~~p-l~~~~~~~i~~  310 (565)
                         .+..+.|+..+..+.+.++++++++|..||++++++|+++++...|+.+.+++.++.++||+++| ++|+++|++.+
T Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  853 (1108)
T 3l9o_A          774 NPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIED  853 (1108)
T ss_dssp             CCSGGGSSCCSCC---CCCCCCCEESSCEEEEEEEECCCCTTTTSHHHHHHHHHHHHHHHHHCSSCCTTHHHHHHHCCCC
T ss_pred             cccCCccccCCCcccCCceEEEEechhheeeccceEEecCCCcCCHHHHHHHHHHHHHHHHhcCCCCcccChhhhcccCC
Confidence               11122344456778999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhchhcchhHHHHHHHHHHHhHhCCccCC
Q 008449          311 SSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSD  390 (565)
Q Consensus       311 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~~~~e~~~~~~VL~~Lgyid~~  390 (565)
                      .+|.+...+++.|+++|.+||||+||++++||++++++.+|+++++++++++++++++.+++||++|++||++|||||++
T Consensus       854 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~  933 (1108)
T 3l9o_A          854 EDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPN  933 (1108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             CccchhhhhhhhhccCchhHHHHHHHhCCCCCCChHHHHHhhhcceeeccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 008449          391 DVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQL  470 (565)
Q Consensus       391 ~~vt~KGrvAceI~s~dELllTEllf~g~f~~L~p~eiaAlLS~fV~qek~~~~~~l~~~L~~~~~~l~~ia~~I~~v~~  470 (565)
                      ++||+||||||||+|+||||+|||||+|+|++|+|+||||||||||||+|+++.|.++++|++++++++++|++|+++|.
T Consensus       934 ~~v~~kgr~a~~i~~~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ 1013 (1108)
T 3l9o_A          934 DIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMK 1013 (1108)
T ss_dssp             CCCSHHHHHHHC-CCTTHHHHHHHHHHHCCCSSCCTHHHHHTCC------------------CHHHHHHHHHHHHHHHHH
T ss_pred             CcCcHHhHHHHHhcCccHHHHHHHHHhCcccCCCHHHHHHHHhheeeecccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             HcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 008449          471 ECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAV  550 (565)
Q Consensus       471 ~~~l~~~~~~~~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdv~EGsIVR~irRLdEllrqv~~Aa~~iGn~~L~~k~e~a~  550 (565)
                      +|||++++++|+++|+||||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||++|+
T Consensus      1014 ~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~~~l~~k~~~a~ 1093 (1108)
T 3l9o_A         1014 DSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVL 1093 (1108)
T ss_dssp             HTTCSCHHHHHHHHHCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCCHHHHHHHHHHH
T ss_pred             HhCCCCChHHhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCcccccCCCC
Q 008449          551 SKIKRDIVFAASLYL  565 (565)
Q Consensus       551 ~~IkRDIVfa~SLYl  565 (565)
                      ++|||||||++||||
T Consensus      1094 ~~i~r~iv~~~slyl 1108 (1108)
T 3l9o_A         1094 KLIHRDIVSAGSLYL 1108 (1108)
T ss_dssp             HHHHHHTCCCCCCC-
T ss_pred             HHhcCCEEeeccccC
Confidence            999999999999997
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 565
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 5e-13
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 66.1 bits (160), Expect = 5e-13
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 1   MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 60
           +PA+ V+  ++ +FDG   + I   EY QM+GRAGR G+DERG  I++V  +      K 
Sbjct: 136 LPARRVIVRSLYRFDG-YSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKR 194

Query: 61  MLKG 64
            + G
Sbjct: 195 YIFG 198

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query565
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.29
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 96.4
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 95.81
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 95.7
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 95.35
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 94.92
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 94.5
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 93.73
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 92.52
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 90.45
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 87.51
d2p6ra2198 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 86.28
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 85.82
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 83.85
d2p6ra185 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 82.67
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.29  E-value=1e-12  Score=124.69  Aligned_cols=66  Identities=38%  Similarity=0.656  Sum_probs=57.9

Q ss_pred             CCccEEEEcCCeeecCCcceecCHHHHHHhhccCCCCCCCCceEEEEEccCCCCHHHHHHHhcCCCC
Q 008449            1 MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSAD   67 (565)
Q Consensus         1 mPAr~Vv~~~~~k~dg~~~r~l~~~E~~QM~GRAGRrg~D~~G~~ii~~~~~~~~~~~~~~~~~~~~   67 (565)
                      +||.+|||.++.+|||.+. +++..+|.||+|||||+|.|+.|.+++++.+......+++|+.|+|+
T Consensus       136 ~p~~~vvi~~~~~~d~~~~-~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~~~~~k~~~~~~pe  201 (201)
T d2p6ra4         136 LPARRVIVRSLYRFDGYSK-RIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPE  201 (201)
T ss_dssp             CCBSEEEECCSEEESSSEE-ECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCC
T ss_pred             CCCceEEEecceeccCCcC-CCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCChHHHHHHHhccCCC
Confidence            6999999999999998764 68999999999999999999999999999876323457889999875
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure