Citrus Sinensis ID: 008450

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-----
Protein Sequence
MSWAVADAVDYKGSPADPSKTGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEcccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccHEEHccEEEEEcccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHcccccccccHHccc
Coil and Loop (DISEMBL)
MSWAVADAvdykgspadpsktgIELCERLSTMGIAVNLVTYLVGtmhlpsatsaniVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLrqlrprpcketathtceqasgfQMGVLYIALYLIALGtgglkssvsgfgtdqfdekdekEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKryrykkssgspiVHIFQVIVAAIKKRkmdlpcnvgmlyedtpeasrihhteqfhfLDKAAIvaegdfeagstpnpwklcsvtSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERsigrfqipagslTVFFVSAILITLAVYDRLIMPlwkkwkgkpgftnlQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFflvgageafiytgqldffitkspkgmktmsTGLFLTTLSLGFFVSSFLVAVVKKVtgskggggwladninrgRLDLFYGLLAILSIINLVIYLICAvwykpkkpkagiqmetyvkgssaeekc
Flexible Loop (DISEMBL)
mswavadavdykgspadpsktGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKkssgspivHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDfeagstpnpwKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVtgskggggwladniNRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGIQMEtyvkgssaeekc
Low Complexity Region (SEG)
MSWAVADAVDYKGSPADPSKTGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYffsrffffISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKtmstglflttlslgffvssflvavvkkvtgskggggWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC
Disordered region (IsUnstruct)
*********************GIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGF**************QMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPK*********************
Disordered Region (DISOPRED)
*SWAVADAVDYKGSPADPSKTGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK*******EQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEK*****TQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNV********************************************CSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYK***********************
Disordered Region (DISEMBL)
********VDYKGSPADPSKTGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP*********TCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGIQMETY**********
Disordered Region (DISPRO)
*SWAVADAVDYKGSPADPSKTGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKP*******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSWAVADAVDYKGSPADPSKTGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	565	2.2.26 [Sep-21-2011]
Q9SZY4	577	Nitrate transporter 1.4 O	yes	no	0.985	0.965	0.730	0.0
Q05085	590	Nitrate transporter 1.1 O	no	no	0.959	0.918	0.546	1e-165
Q9LVE0	590	Nitrate transporter 1.3 O	no	no	0.923	0.884	0.491	1e-138
Q9M390	570	Peptide transporter PTR1	no	no	0.943	0.935	0.426	1e-124
P46032	585	Peptide transporter PTR2	no	no	0.955	0.923	0.416	1e-123
Q9LFB8	570	Peptide transporter PTR5	no	no	0.941	0.933	0.415	1e-122
Q93Z20	590	Probable peptide/nitrate	no	no	0.941	0.901	0.390	1e-116
Q9SX20	596	Probable nitrite transpor	no	no	0.916	0.869	0.428	1e-110
Q9LQL2	614	Nitrate transporter 1.5 O	no	no	0.962	0.885	0.379	1e-109
Q93VV5	591	Probable peptide/nitrate	no	no	0.939	0.898	0.385	1e-105

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/576 (73%), Positives = 480/576 (83%), Gaps = 19/576 (3%)

Query: 2   SWAVADAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPSA 51
           SW VADAVDYKG PAD SKTG          IE+ ERLSTMGIAVNLVTYL+ TMHLPS+
Sbjct: 6   SWTVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSS 65

Query: 52  TSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR 111
           TSANIVTDFMGTSFLLCLLGGFLAD+FLGR+KTI IF+ +Q LGTG LA+ TKL +LRP 
Sbjct: 66  TSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPP 125

Query: 112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 171
            C       C  A+ FQM +LY++LYLIALGTGGLKSS+SGFG+DQFD+KD KEK  MA+
Sbjct: 126 TCHHG--EACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAF 183

Query: 172 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSS 231
           FF+RFFFFIS+GTL+AVTVLVY+QDE+ RS  YGIC+V+M +AI+IFL GTKRYRYKKS 
Sbjct: 184 FFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQ 243

Query: 232 GSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFE 291
           GSP+V IFQVI AA +KRKM+LP ++  LYED PE  RI HT+QFH LDKAAIVAEGDFE
Sbjct: 244 GSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGIRIEHTDQFHLLDKAAIVAEGDFE 303

Query: 292 AG----STPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERS 347
                 + PNPWKL SVT VEEVKM+ RLLPIWATTIIFWTTYAQMITFSVEQA+TM R+
Sbjct: 304 QTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRN 363

Query: 348 IGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGM 407
           IG F+IPAGSLTVFFV+AILITLAVYDR IMP WKKWKGKPGF++LQR+AIGLVLS  GM
Sbjct: 364 IGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKPGFSSLQRIAIGLVLSTAGM 423

Query: 408 AAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKG 467
           AAAALVE+KRLSVA++   +  TLP+SVFLL+PQFFLVGAGEAFIYTGQLDFFIT+SPKG
Sbjct: 424 AAAALVEQKRLSVAKSS--SQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKG 481

Query: 468 MKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILS 527
           MKTMSTGLFLTTLSLGFFVSSFLV++VK+VT +    GWLADNIN GRLD FY LL ILS
Sbjct: 482 MKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYFYWLLVILS 541

Query: 528 IINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEE 563
            IN V+Y+ICA+W+KP K K  ++ E   KG S E+
Sbjct: 542 GINFVVYIICALWFKPTKGKDSVEKENG-KGFSVED 576

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q05085|PTR7_ARATH Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1

 Score =  581 bits (1498), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 313/573 (54%), Positives = 406/573 (70%), Gaps = 31/573 (5%)

Query: 7   DAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPSATSANI 56
           DA D++G PAD SKTG          IE  ERL+T+GI VNLVTYL GTMHL +AT+AN 
Sbjct: 14  DAWDFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANT 73

Query: 57  VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET 116
           VT+F+GTSF+LCLLGGF+ADTFLGRY TIAIFAA+Q  G  +L + T +  LRP  C  T
Sbjct: 74  VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPT 133

Query: 117 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 176
            +  CEQASG Q+ VLY+ALYL ALGTGG+K+SVSGFG+DQFDE + KE+++M YFF+RF
Sbjct: 134 TSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRF 193

Query: 177 FFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIV 236
           FF I++G+L+AVTVLVY+QD++ R  GYGIC+ A+ +A+ +FLAGT RYR+KK  GSP+ 
Sbjct: 194 FFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMT 253

Query: 237 HIFQVIVAAIKKRKMDLPCNVGMLY--EDTPEAS-------RIHHTEQFHFLDKAAIVAE 287
            +  VIVAA + RK++LP +   LY  +D   A        ++ HTEQF  LDKAAI   
Sbjct: 254 QVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAI--- 310

Query: 288 GDFEAGSTP---NPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTM 344
            D EAG T    N W L ++T VEEVK + R+LPIWAT I+FWT +AQ+ T SV Q+ T+
Sbjct: 311 RDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETL 370

Query: 345 ERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLS 403
           +RSIG F+IP  S+ VF+V  +L+T AVYDR+ + L KK    P G   LQR+ +GL   
Sbjct: 371 DRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFG 430

Query: 404 IVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK 463
            + MA AALVE KRL  A A G T  TLP+  +LLIPQ+ +VG GEA IYTGQLDFF+ +
Sbjct: 431 SMAMAVAALVELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRE 490

Query: 464 SPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLL 523
            PKGMK MSTGL L+TL+LGFF SS LV +V+K TG      W+AD++N+GRL  FY L+
Sbjct: 491 CPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGK--AHPWIADDLNKGRLYNFYWLV 548

Query: 524 AILSIINLVIYLICAVWYKPKKPK---AGIQME 553
           A+L  +N +I+L+ + WY  K+ +    GI+++
Sbjct: 549 AVLVALNFLIFLVFSKWYVYKEKRLAEVGIELD 581

Dual affinity nitrate transporter. Involved in proton-dependent nitrate uptake and in the regulation of the nitrate transporter NRT2.1. Acts also as a nitrate sensor that trigger a specific signaling pathway stimulating lateral root growth and seed germination. The uptake activity is not required for sensor function. Displays an auxin transport facilitation inhibited by high nitrate concentration. Required to prevent auxin accumulation in preemerged lateral root primordia and young lateral roots when external nitrate concentration is low or null. May be involved in the basipetal transport of auxin out of the lateral root tips.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVE0|PTR33_ARATH Nitrate transporter 1.3 OS=Arabidopsis thaliana GN=NRT1.3 PE=1 SV=1

 Score =  491 bits (1265), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 275/559 (49%), Positives = 373/559 (66%), Gaps = 37/559 (6%)

Query: 7   DAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPSATSANI 56
           +A DY+G+P D SKTG           EL ER+  MGI++NLVTYLVG +H+ SA SA I
Sbjct: 16  EAYDYRGNPPDKSKTGGWLGAGLILGSELSERICVMGISMNLVTYLVGDLHISSAKSATI 75

Query: 57  VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE- 115
           VT+FMGT  LL LLGGFLAD  LGRYK +AI A+V  LG  +L + T +  +RP  C + 
Sbjct: 76  VTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTALGVLLLTVATTISSMRPPICDDF 135

Query: 116 -TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 174
               H C +A+G Q+ +LY+ALY IALG GG+KS+VSGFG+DQFD  D KE+ QM +FF+
Sbjct: 136 RRLHHQCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFFFN 195

Query: 175 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSP 234
           RF+F IS+G+L AV  LVY+QD + R  GYGI +  M +A I+ L GTKRYR+KK  GSP
Sbjct: 196 RFYFSISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKGSP 255

Query: 235 IVHIFQVIVAAIKKRKMDLPCNVGML--YEDTPEASRIHHTEQFHFLDKAAIV------A 286
              I++V   A KKRK   P +  +L  Y++T     + HTE    LDKAAI       +
Sbjct: 256 FTTIWRVGFLAWKKRKESYPAHPSLLNGYDNTT----VPHTEMLKCLDKAAISKNESSPS 311

Query: 287 EGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 346
             DFE     +PW + +VT VEEVK+V +L+PIWAT I+FWT Y+QM TF+VEQAT M+R
Sbjct: 312 SKDFEE---KDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATFMDR 368

Query: 347 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLSIV 405
            +G F +PAGS + F +  IL+  ++ +R+ +PL ++   KP G T+LQR+ +GLV S+ 
Sbjct: 369 KLGSFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVFSMA 428

Query: 406 GMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP 465
            MA AA++E  R   A           +S F L+PQ+FLVGAGEAF Y GQL+FFI ++P
Sbjct: 429 AMAVAAVIENARREAA-----VNNDKKISAFWLVPQYFLVGAGEAFAYVGQLEFFIREAP 483

Query: 466 KGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAI 525
           + MK+MSTGLFL+T+S+GFFVSS LV++V +VT       WL  N+N+ RL+ FY LL +
Sbjct: 484 ERMKSMSTGLFLSTISMGFFVSSLLVSLVDRVTDK----SWLRSNLNKARLNYFYWLLVV 539

Query: 526 LSIINLVIYLICAVWYKPK 544
           L  +N +I+++ A+ ++ K
Sbjct: 540 LGALNFLIFIVFAMKHQYK 558

Low-affinity nitrate transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  445 bits (1145), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/556 (42%), Positives = 342/556 (61%), Gaps = 23/556 (4%)

Query: 9   VDYKGSPADPSKTGI----------ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVT 58
           VD   +PA+  KTG           E CERL+  G+  NLV YL   ++  +AT+AN VT
Sbjct: 13  VDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVT 72

Query: 59  DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT 118
           ++ GT ++  L+G F+AD +LGRY TIA F  +   G  +L +   +  L+P  C     
Sbjct: 73  NWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCN---A 129

Query: 119 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 178
            TC   S  Q  V ++ALY+IALGTGG+K  VS FG DQFDE DE EK + + FF+ F+F
Sbjct: 130 DTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYF 188

Query: 179 FISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHI 238
            I++G L+A TVLV+IQ  +    G+G+ +VAM +A+  F  G++ YR ++  GSP+  I
Sbjct: 189 SINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRI 248

Query: 239 FQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIH------HTEQFHFLDKAAIVAEGDFEA 292
           FQVIVAA +K  + +P +  +L+E   + S I       HT+   F DKAA+ ++ D   
Sbjct: 249 FQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK 308

Query: 293 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGR-F 351
               NPW+LCSVT VEE+K +  LLP+WAT I+F T Y+QM T  V Q  TM++ +G+ F
Sbjct: 309 DGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNF 368

Query: 352 QIPAGSLTVFFVSAILITLAVYDRLIMPLWKKW-KGKPGFTNLQRMAIGLVLSIVGMAAA 410
           +IP+ SL++F   ++L    VYD+ I+PL +K+ + + GFT LQRM IGLV+SI  M  A
Sbjct: 369 EIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITA 428

Query: 411 ALVERKRLS-VARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 469
            ++E  RL  V          + +S+F  IPQ+ L+G  E F + GQL+FF  ++P  M+
Sbjct: 429 GVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMR 488

Query: 470 TMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSII 529
           ++ + L LTT++LG ++S+ LV VV K+T   G  GW+ DN+NRG LD F+ LLA LS +
Sbjct: 489 SLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFL 548

Query: 530 NLVIYLICAVWYKPKK 545
           N ++YL  +  YK KK
Sbjct: 549 NFLVYLWISKRYKYKK 564

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  444 bits (1141), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/562 (41%), Positives = 348/562 (61%), Gaps = 22/562 (3%)

Query: 3   WAVADAVDYKGSPADPSKTGI----------ELCERLSTMGIAVNLVTYLVGTMHLPSAT 52
           +A   +VD+ G+P    KTG           E CERL+  GIA NL+TYL   +H  + +
Sbjct: 24  YAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVS 83

Query: 53  SANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP 112
           +A  VT + GT +L  L+G  LAD + GRY TIA F+ +  +G   L +   +  L+P  
Sbjct: 84  AATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE 143

Query: 113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 172
           C       C  A+  Q  + +  LYLIALGTGG+K  VS FG DQFD+ D +E+ + A F
Sbjct: 144 C---IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASF 200

Query: 173 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSG 232
           F+ F+F I++G L++ ++LV+IQ+     +G+GI +V M +AI  F  GT  YR++K  G
Sbjct: 201 FNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGG 260

Query: 233 SPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS------RIHHTEQFHFLDKAAIVA 286
           SPI  I QV+VA+ +K  + +P +  +LYE   + S      +I HT+   +LDKAA+++
Sbjct: 261 SPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query: 287 EGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 346
           E + ++G   N W+LC+VT VEE+K++ R+ PIWA+ IIF   YAQM T  V+Q   M  
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query: 347 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKG-KPGFTNLQRMAIGLVLSIV 405
            IG FQ+P  +L  F  ++++I + +YDR I+PL +K+ G   GFT +QRM IGL +S++
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440

Query: 406 GMAAAALVERKRLSVARAVGL--TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK 463
            MAAAA+VE  RL +A  +GL  + A +P+SV   IPQ+F++GA E F + GQL+FF  +
Sbjct: 441 CMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQ 500

Query: 464 SPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLL 523
           SP  M+++ + L L T +LG ++SS ++ +V   T   G  GW++DN+N G LD F+ LL
Sbjct: 501 SPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLL 560

Query: 524 AILSIINLVIYLICAVWYKPKK 545
           A LS++N+ +Y   A  YK KK
Sbjct: 561 AGLSLVNMAVYFFSAARYKQKK 582

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  440 bits (1131), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/556 (41%), Positives = 346/556 (62%), Gaps = 24/556 (4%)

Query: 9   VDYKGSPADPSKTGI----------ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVT 58
           +D    PA+ +KTG           E CERL+  G++ NL+ YL   M++ + +++  V+
Sbjct: 14  LDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVS 73

Query: 59  DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT 118
           ++ GT +   L+G F+AD +LGRY TIA F  +   G  +L +   +  L P    ET  
Sbjct: 74  NWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGET-- 131

Query: 119 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 178
             C   +G Q  + +IALYLIALGTGG+K  VS FG DQFD+ DEKEK   + FF+ F+F
Sbjct: 132 --CHATAG-QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYF 188

Query: 179 FISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHI 238
            I++G ++A +VLV+IQ  +    G G+ +VAM +A++ F AG+  YR +K  GSP+  +
Sbjct: 189 VINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRM 248

Query: 239 FQVIVAAIKKRKMDLPCNVGMLYEDTPEAS------RIHHTEQFHFLDKAAIVAEGDFEA 292
            QVIVA+ +K K+ +P +  +LYE+    S      ++ HT+   F DKAA+  E D + 
Sbjct: 249 LQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKG 308

Query: 293 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG-RF 351
            +  + WKLC+VT VEE+K + RLLPIWAT I+F + Y+QM T  V Q  T+++ +G  F
Sbjct: 309 AAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNF 368

Query: 352 QIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLSIVGMAAA 410
           +IP+ SL++F   ++L    VYD+LI+P  +K+ G   GFT LQR+ IGLV+SI  M +A
Sbjct: 369 KIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSA 428

Query: 411 ALVERKRLSVARAVGL-TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 469
            ++E  RL+  +   L    T+P+++F  +PQ+FLVG  E F + GQL+FF  ++P  M+
Sbjct: 429 GILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMR 488

Query: 470 TMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSII 529
           ++ + L LT ++ G ++S+FLV +V KVT S G  GW+A N+N G LD F+ LLA LS +
Sbjct: 489 SLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFL 548

Query: 530 NLVIYLICAVWYKPKK 545
           N ++YL  A WY  KK
Sbjct: 549 NFLVYLWIAKWYTYKK 564

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  419 bits (1078), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/555 (39%), Positives = 343/555 (61%), Gaps = 23/555 (4%)

Query: 8   AVDYKGSPADPSKTGI----------ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIV 57
           ++D  G+P    KTG           E CERL+  GIA NL+TY    +H  + ++A+ V
Sbjct: 40  SIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDV 99

Query: 58  TDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETA 117
             + GT ++  L+G  +AD++ GRY TIA F+A+  +G  +L +   L  L+P  C   A
Sbjct: 100 MIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVA 159

Query: 118 THTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 177
              C  A+  Q  V +  LYLIALGTGG+K  VS FG DQFD+ D +E+ + A FF+ F+
Sbjct: 160 AALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFY 219

Query: 178 FFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVH 237
           F I++G+ ++ T+LV++Q+ +   +G+ I +V M ++I  F  GT  YR++K  GSPI  
Sbjct: 220 FSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITR 279

Query: 238 IFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS------RIHHTEQFHFLDKAAIVAEGDFE 291
           + QV+VAA +K K++LP ++  LYE   + S      +I HT+ + FLDKAA+++E + +
Sbjct: 280 VCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESK 339

Query: 292 AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRF 351
           +G+  NPWKLC+VT VEEVK + R+ PIWA+ I++   Y+Q+ T  V+Q  +M R I  F
Sbjct: 340 SGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRSF 399

Query: 352 QIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLSIVGMAAA 410
           +IP  S  VF    +LI++ +YDR ++P  +++ G P G T+LQRM IGL LS++ +AAA
Sbjct: 400 EIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAA 459

Query: 411 ALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKT 470
           A+VE  RL +A+        + +S+F  IPQ+ L+G  E F + G+++FF  +SP  M++
Sbjct: 460 AIVETVRLQLAQDF------VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRS 513

Query: 471 MSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIIN 530
           + + L L   ++G ++SS ++ +V   T   G  GW+ D++N+G LD F+ LL  L ++N
Sbjct: 514 VCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSLGLVN 573

Query: 531 LVIYLICAVWYKPKK 545
           + +Y +  V +  KK
Sbjct: 574 IPVYALICVKHTKKK 588

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/535 (42%), Positives = 328/535 (61%), Gaps = 17/535 (3%)

Query: 24  ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYK 83
           E+CE+L+ +G   N+++YL   +HLP   +AN +T+F GTS L  LLG F+AD+F GR+ 
Sbjct: 37  EICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFW 96

Query: 84  TIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGT 143
           TI   + +  +G  +L +   +  LRP PCK      C  A   Q+ +LY+AL L ALG+
Sbjct: 97  TITFASIIYQIGMTLLTISAIIPTLRPPPCK--GEEVCVVADTAQLSILYVALLLGALGS 154

Query: 144 GGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVG 203
           GG++  V  FG DQFDE D  + T+   +F+ ++F +    L+AVTVLV+IQD +   +G
Sbjct: 155 GGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLG 214

Query: 204 YGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLY-E 262
            GI +VAMF+++I F+ G + YR+   +GSP   + QV VAA +KRK+ +  +  +LY  
Sbjct: 215 LGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFN 274

Query: 263 DTPEAS-----RIHHTEQFHFLDKAAIVAEGD-FEAGSTPNPWKLCSVTSVEEVKMVARL 316
           D  +A      ++ HT+   FLDKAAIV E D  + G  PN W+L +V  VEE+K V R+
Sbjct: 275 DEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEELKSVIRM 334

Query: 317 LPIWATTIIFWTTYAQMITFSVEQATTMERSI-GRFQIPAGSLTVFFVSAILITLAVYDR 375
            PI A+ I+  T YAQ  TFS++QA TM R +   FQIPAGS++VF   A+L T+  YDR
Sbjct: 335 GPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDR 394

Query: 376 LIMPLWKKWKG-KPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGL---TTATL 431
           + + + +K+ G + G T L RM IG V+SI+    A  VE KR SVA   GL       +
Sbjct: 395 VFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIV 454

Query: 432 PVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLV 491
           P+S   LIPQ+ L G  EAF+  G L+FF  ++P+ M++ +T LF   +S+G +VS+ LV
Sbjct: 455 PISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLV 514

Query: 492 AVVKKVTGSKGGGGWLAD-NINRGRLDLFYGLLAILSIINLVIYLICA--VWYKP 543
            +V K +    G  WL D N+NRGRL+ FY L+ +L  +NLV YL CA    YKP
Sbjct: 515 TLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYKP 569

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/569 (37%), Positives = 338/569 (59%), Gaps = 25/569 (4%)

Query: 9   VDYKGSPADPSKTG-------IELCERLSTM---GIAVNLVTYLVGTMHLPSATSANIVT 58
           VDY G P+  S +G       I L + L+T+   G+ VNLV +L   +   +A +AN V+
Sbjct: 26  VDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFGVGVNLVLFLTRVLQQNNADAANNVS 85

Query: 59  DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT 118
            + GT ++  L+G FL+D++ GRYKT AIF  +  +G   L++ + +  +RPR C +  T
Sbjct: 86  KWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLSSLSLSSYMFLIRPRGCGDEVT 145

Query: 119 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 178
             C   S  ++ + Y ++YLIALG GG + +++  G DQFDE+  KE      FFS F+ 
Sbjct: 146 -PCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYSKIAFFSYFYL 204

Query: 179 FISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHI 238
            ++LG+L + T+L Y +DE   ++G+   + +  + +I+FL GT RYRY K +G+P+   
Sbjct: 205 ALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYFKPTGNPLSRF 264

Query: 239 FQVIVAAIKKRKMDLPCN-VGMLYEDTPEAS--------RIHHTEQFHFLDKAAIVAEGD 289
            QV+VAA KK  ++ P      +Y+   E          RI HT++F FLDKAA +   D
Sbjct: 265 CQVLVAATKKSSVEAPLRGREEMYDGDSEGKNASVNTGRRIVHTDEFKFLDKAAYITARD 324

Query: 290 FE--AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERS 347
            +     + NPW+LC VT VEEVK + RL+PIW  TII+   + QM +  VEQ   M  S
Sbjct: 325 LDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQMASLFVEQGAAMNTS 384

Query: 348 IGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWK--GKPGFTNLQRMAIGLVLSIV 405
           +  F+IP  S++ F + ++ + + +Y R++ P+  ++K  G  G T L RM IGLV++++
Sbjct: 385 VSDFKIPPASMSSFDILSVALFIFLYRRVLEPVANRFKKNGSKGITELHRMGIGLVIAVI 444

Query: 406 GMAAAALVERKRLSVA-RAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKS 464
            M AA +VE  RL  A ++      +  +S+F   PQ+ L+GA E F+Y GQL+FF  ++
Sbjct: 445 AMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAPQYSLIGASEVFMYVGQLEFFNAQT 504

Query: 465 PKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLA 524
           P G+K+  + L + ++S+G FVSS LV +V K++      GW+  N+N+G LD FY LLA
Sbjct: 505 PDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTEDHMPGWIPRNLNKGHLDRFYFLLA 564

Query: 525 ILSIINLVIYLICAVWYKPKKPKAGIQME 553
            L+ I+LV+Y+ CA WYKP + +   +M+
Sbjct: 565 ALTSIDLVVYIACAKWYKPIQLEGKDEMQ 593

Low-affinity proton-dependent bidirectional nitrate transporter. Involved in nitrate loading into xylem and not in nitrate uptake. Not involved in histidine or dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1

 Score =  384 bits (986), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 331/561 (59%), Gaps = 30/561 (5%)

Query: 2   SWAVAD--AVDYKGSPADPSKTG-------IELCERLSTMGIAV---NLVTYLVGTMHLP 49
           +W +A+  +VD++G P++P+K G       +   +    MGIA    NL+TY++  MH P
Sbjct: 21  NWELAEEESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFP 80

Query: 50  SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLR 109
            + +ANIVT+F+GT F+  LLGG+L+D FLG + TI IF  V+  G  +L++   L QL+
Sbjct: 81  LSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLK 140

Query: 110 PRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 169
           P  C      TCE+A GF+  + ++ALYL+ALG+G +K ++   G DQF +   K+  ++
Sbjct: 141 PPKCNPLIDQTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRL 200

Query: 170 AYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKK 229
           + +F+  +F  S+G L+A+T+LV++Q      +G+G+ + AM M II  ++GT  +R K+
Sbjct: 201 SSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKR 260

Query: 230 SSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLY------EDTPEASRIHHTEQFHFLDKAA 283
              S    I  VIVAAI KRK+  P +  ML+       D   +S + HT +F FLDKA 
Sbjct: 261 PRRSIFTPIAHVIVAAILKRKLASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFLDKAC 320

Query: 284 IVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATT 343
           I  +   +  +  +PW+LC+VT VE+VK +  L+PI+A+TI+F T  AQ+ TFSV+Q ++
Sbjct: 321 IKIQ---DTNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSS 377

Query: 344 ME-RSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKG-KPGFTNLQRMAIGLV 401
           M  R    F IP  SL       ++  + +YD  ++P  +K  G   G   L R+ IGL 
Sbjct: 378 MNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLF 437

Query: 402 LSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFI 461
           LS   M +AA++E+KR   +   G       +S+F + PQF + G  E F   G ++FF 
Sbjct: 438 LSTFSMVSAAMLEKKRRDSSVLDGRI-----LSIFWITPQFLIFGISEMFTAVGLIEFFY 492

Query: 462 TKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTG-SKGGGGWLADN-INRGRLDLF 519
            +S KGM++    L   + S GF+ SS LV+VV K+T  S    GWL +N +N+ RLDLF
Sbjct: 493 KQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLNKDRLDLF 552

Query: 520 YGLLAILSIINLVIYLICAVW 540
           Y LLA+LS++N + YL  + W
Sbjct: 553 YWLLAVLSLLNFLSYLFWSRW 573

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	565
449493693	623	PREDICTED: nitrate transporter 1.4-like	0.992	0.900	0.776	0.0
449443301	623	PREDICTED: nitrate transporter 1.4-like	0.992	0.900	0.776	0.0
402810586	581	nitrate transporter [Cucumis sativus]	0.992	0.965	0.776	0.0
255566995	581	oligopeptide transporter, putative [Rici	0.996	0.969	0.808	0.0
297738942	576	unnamed protein product [Vitis vinifera]	1.0	0.980	0.795	0.0
225445474	580	PREDICTED: nitrate transporter 1.4-like	1.0	0.974	0.795	0.0
356563024	581	PREDICTED: nitrate transporter 1.4-like	0.996	0.969	0.768	0.0
356548591	581	PREDICTED: nitrate transporter 1.4-like	0.985	0.958	0.764	0.0
430736183	580	nitrate transporter NRT1.4B [Cucumis sat	0.992	0.967	0.778	0.0
449466528	599	PREDICTED: nitrate transporter 1.4-like	0.992	0.936	0.778	0.0

>gi|449493693|ref|XP_004159415.1| PREDICTED: nitrate transporter 1.4-like [Cucumis sativus]

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/573 (77%), Positives = 493/573 (86%), Gaps = 12/573 (2%)

Query: 5   VADAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPSATSA 54
           VADAVDYKG PA+ SKTG          IELCERLSTMGIAVNLVTYLVGT+HLPSA SA
Sbjct: 51  VADAVDYKGCPANRSKTGGWVPAALIVGIELCERLSTMGIAVNLVTYLVGTLHLPSANSA 110

Query: 55  NIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK 114
           NIVTDFMGT FLL +LGGFLAD+FLGRYKTIAIFA++QTLGTG LA++TKL QL P PC 
Sbjct: 111 NIVTDFMGTCFLLSMLGGFLADSFLGRYKTIAIFASIQTLGTGTLAVITKLPQLHPPPCH 170

Query: 115 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 174
             A+  C+QA+GFQMG++Y+ LY+IALGTGG+KSSVSGFGTDQFDEKD+KEK QMAYFF+
Sbjct: 171 PIASKNCKQANGFQMGMIYLPLYIIALGTGGIKSSVSGFGTDQFDEKDDKEKAQMAYFFN 230

Query: 175 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSP 234
           RFF F+S GTL+AVTVLVY+QDE+ RS  YGICSV+MF AI+IFL GTKRYRYK S GSP
Sbjct: 231 RFFLFVSSGTLLAVTVLVYLQDEVGRSWAYGICSVSMFTAILIFLCGTKRYRYKISMGSP 290

Query: 235 IVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFE--A 292
           IVHIFQV+VAAI KRKM+L  N  +LYED+   SRI HT QF FLDKAAIVA+GDFE   
Sbjct: 291 IVHIFQVLVAAINKRKMELQLNATLLYEDSAATSRIDHTNQFQFLDKAAIVADGDFEKSV 350

Query: 293 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQ 352
            S PNPWKLCSVT VEEVKM+ RLLPIWATTIIFWTTYAQMITFSV QA+TMERS+G F+
Sbjct: 351 SSAPNPWKLCSVTRVEEVKMMMRLLPIWATTIIFWTTYAQMITFSVVQASTMERSLGNFK 410

Query: 353 IPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL 412
           IPAGSL VFFV+AILITLA YDRLIMPLWKKWKG+PGFTNLQR+AIGL+LS  GMAAAAL
Sbjct: 411 IPAGSLPVFFVAAILITLAFYDRLIMPLWKKWKGQPGFTNLQRIAIGLILSTFGMAAAAL 470

Query: 413 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMS 472
           VE KRLSVA+AVG +TATLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+SPKGMKTMS
Sbjct: 471 VEIKRLSVAKAVGRSTATLPLSVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMKTMS 530

Query: 473 TGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLV 532
           TGLFLTTLSLGFFVSSFLVAVVK VTGS  G GWLADNIN  RLD FYGLL ILS IN V
Sbjct: 531 TGLFLTTLSLGFFVSSFLVAVVKSVTGSMDGQGWLADNINYARLDCFYGLLTILSAINFV 590

Query: 533 IYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 565
            +L+CA+WYKP+KPK  ++MET   G S  EKC
Sbjct: 591 AFLVCAIWYKPQKPKQLLEMETSTNGGSGAEKC 623

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443301|ref|XP_004139418.1| PREDICTED: nitrate transporter 1.4-like [Cucumis sativus]

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/573 (77%), Positives = 493/573 (86%), Gaps = 12/573 (2%)

Query: 5   VADAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPSATSA 54
           VADAVDYKG PA+ SKTG          IELCERLSTMGIAVNLVTYLVGT+HLPSA SA
Sbjct: 51  VADAVDYKGCPANRSKTGGWVPAALVVGIELCERLSTMGIAVNLVTYLVGTLHLPSANSA 110

Query: 55  NIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK 114
           NIVTDFMGT FLL +LGGFLAD+FLGRYKTIAIFA++QTLGTG LA++TKL QL P PC 
Sbjct: 111 NIVTDFMGTCFLLSMLGGFLADSFLGRYKTIAIFASIQTLGTGTLAVITKLPQLHPPPCH 170

Query: 115 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 174
             A+  C+QA+GFQMG++Y+ LY+IALGTGG+KSSVSGFGTDQFDEKD+KEK QMAYFF+
Sbjct: 171 PIASKNCKQANGFQMGMIYLPLYIIALGTGGIKSSVSGFGTDQFDEKDDKEKAQMAYFFN 230

Query: 175 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSP 234
           RFF F+S GTL+AVTVLVY+QDE+ RS  YGICSV+MF AI+IFL GTKRYRYK S GSP
Sbjct: 231 RFFLFVSSGTLLAVTVLVYLQDEVGRSWAYGICSVSMFTAILIFLCGTKRYRYKISMGSP 290

Query: 235 IVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFE--A 292
           IVHIFQV+VAAI KRKM+L  N  +LYED+   SRI HT QF FLDKAAIVA+GDFE   
Sbjct: 291 IVHIFQVLVAAINKRKMELQLNATLLYEDSAATSRIDHTNQFQFLDKAAIVADGDFEKSV 350

Query: 293 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQ 352
            S PNPWKLCSVT VEEVKM+ RLLPIWATTIIFWTTYAQMITFSV QA+TMERS+G F+
Sbjct: 351 SSAPNPWKLCSVTRVEEVKMMMRLLPIWATTIIFWTTYAQMITFSVVQASTMERSLGNFK 410

Query: 353 IPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL 412
           IPAGSL VFFV+AILITLA YDRLIMPLWKKWKG+PGFTNLQR+AIGL+LS  GMAAAAL
Sbjct: 411 IPAGSLPVFFVAAILITLAFYDRLIMPLWKKWKGQPGFTNLQRIAIGLILSTFGMAAAAL 470

Query: 413 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMS 472
           VE KRLSVA+AVG +TATLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+SPKGMKTMS
Sbjct: 471 VEMKRLSVAKAVGRSTATLPLSVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMKTMS 530

Query: 473 TGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLV 532
           TGLFLTTLSLGFFVSSFLVAVVK VTGS  G GWLADNIN  RLD FYGLL ILS IN V
Sbjct: 531 TGLFLTTLSLGFFVSSFLVAVVKSVTGSMDGQGWLADNINYARLDCFYGLLTILSTINFV 590

Query: 533 IYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 565
            +L+CA+WYKP+KPK  ++MET   G S  EKC
Sbjct: 591 AFLVCAIWYKPQKPKQLLEMETSTNGGSGAEKC 623

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402810586|gb|AFR11354.1| nitrate transporter [Cucumis sativus]

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/573 (77%), Positives = 493/573 (86%), Gaps = 12/573 (2%)

Query: 5   VADAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPSATSA 54
           VADAVDYKG PA+ SKTG          IELCERLSTMGIAVNLVTYLVGT+HLPSA SA
Sbjct: 9   VADAVDYKGCPANRSKTGGWVPAALIVGIELCERLSTMGIAVNLVTYLVGTLHLPSANSA 68

Query: 55  NIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK 114
           NIVTDFMGT FLL +LGGFLAD+FLGRYKTIAIFA++QTLGTG LA++TKL QL P PC 
Sbjct: 69  NIVTDFMGTCFLLSMLGGFLADSFLGRYKTIAIFASIQTLGTGTLAVITKLPQLHPPPCH 128

Query: 115 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 174
             A+  C+QA+GFQMG++Y+ LY+IALGTGG+KSSVSGFGTDQFDEKD+KEK QMAYFF+
Sbjct: 129 PIASKNCKQANGFQMGMIYLPLYIIALGTGGIKSSVSGFGTDQFDEKDDKEKAQMAYFFN 188

Query: 175 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSP 234
           RFF F+S GTL+AVTVLVY+QDE+ RS  YGICSV+MF AI+IFL GTKRYRYK S GSP
Sbjct: 189 RFFLFVSSGTLLAVTVLVYLQDEVGRSWAYGICSVSMFTAILIFLCGTKRYRYKISMGSP 248

Query: 235 IVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFE--A 292
           IVHIFQV+VAAI KRKM+L  N  +LYED+   SRI HT QF FLDKAAIVA+GDFE   
Sbjct: 249 IVHIFQVLVAAINKRKMELQLNATLLYEDSAATSRIDHTNQFQFLDKAAIVADGDFEKSV 308

Query: 293 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQ 352
            S PNPWKLCSVT VEEVKM+ RLLPIWATTIIFWTTYAQMITFSV QA+TMERS+G F+
Sbjct: 309 SSAPNPWKLCSVTRVEEVKMMMRLLPIWATTIIFWTTYAQMITFSVVQASTMERSLGNFK 368

Query: 353 IPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL 412
           IPAGSL VFFV+AILITLA YDRLIMPLWKKWKG+PGFTNLQR+AIGL+LS  GMAAAAL
Sbjct: 369 IPAGSLPVFFVAAILITLAFYDRLIMPLWKKWKGQPGFTNLQRIAIGLILSTFGMAAAAL 428

Query: 413 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMS 472
           VE KRLSVA+AVG +TATLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+SPKGMKTMS
Sbjct: 429 VEIKRLSVAKAVGRSTATLPLSVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMKTMS 488

Query: 473 TGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLV 532
           TGLFLTTLSLGFFVSSFLVAVVK VTGS  G GWLADNIN  RLD FYGLL ILS IN V
Sbjct: 489 TGLFLTTLSLGFFVSSFLVAVVKSVTGSMDGQGWLADNINYARLDCFYGLLTILSAINFV 548

Query: 533 IYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 565
            +L+CA+WYKP+KPK  ++MET   G S  EKC
Sbjct: 549 AFLVCAIWYKPQKPKQLLEMETSTNGGSGAEKC 581

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566995|ref|XP_002524480.1| oligopeptide transporter, putative [Ricinus communis] gi|223536268|gb|EEF37920.1| oligopeptide transporter, putative [Ricinus communis]

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/579 (80%), Positives = 514/579 (88%), Gaps = 16/579 (2%)

Query: 1   MSWAVADAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPS 50
           MSWAVADAVDYKG PAD SKTG          IE+CERLSTMGI VNLVTYL+GTMHLPS
Sbjct: 5   MSWAVADAVDYKGFPADRSKTGGWLPAALVLGIEVCERLSTMGIGVNLVTYLIGTMHLPS 64

Query: 51  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 110
           ATSAN+VTDFMGTSFLLCLLGGFLAD+FLGRYKTIAIFA VQTLGTGMLA +TK+ QLRP
Sbjct: 65  ATSANVVTDFMGTSFLLCLLGGFLADSFLGRYKTIAIFALVQTLGTGMLAAITKIPQLRP 124

Query: 111 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
            PC     ++C QA+GFQMG+LY+ALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK+QM 
Sbjct: 125 PPCN--TNNSCVQANGFQMGILYLALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKSQMN 182

Query: 171 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 230
           YFF RFFFFIS+GTLMAVTVLVY+QDE+ RS GYGICSV+MF+AI+IFL+GTKRYRYKKS
Sbjct: 183 YFFHRFFFFISIGTLMAVTVLVYVQDEVGRSWGYGICSVSMFVAILIFLSGTKRYRYKKS 242

Query: 231 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDF 290
           SGSPIVHIFQVI AA+KKR MDLP NV +LYE+T EA+RI HT+QFHFLDKAAIVAEGDF
Sbjct: 243 SGSPIVHIFQVIAAAVKKRHMDLPYNVSLLYENTLEAARIQHTDQFHFLDKAAIVAEGDF 302

Query: 291 -EAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG 349
              G+TPNPWKLC VT VEEVKM+  +LPIWATTI+FWTTYAQMITFSVEQA+TMERSIG
Sbjct: 303 ANGGTTPNPWKLCPVTRVEEVKMMVSMLPIWATTILFWTTYAQMITFSVEQASTMERSIG 362

Query: 350 RFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAA 409
            FQIPAGSLTVFFV+AILI+LA YDR+IMPLWK WKGKPGFTNLQR++IGLVLS +GMAA
Sbjct: 363 SFQIPAGSLTVFFVAAILISLAAYDRIIMPLWKTWKGKPGFTNLQRISIGLVLSTLGMAA 422

Query: 410 AALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 469
           AALVERKRLSVA+AVG  T TLP+SVFLLIPQFFLVGAGEAFIYTGQLDFFIT+SPKGMK
Sbjct: 423 AALVERKRLSVAKAVGGDTLTLPISVFLLIPQFFLVGAGEAFIYTGQLDFFITQSPKGMK 482

Query: 470 TMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGG-GWLADNINRGRLDLFYGLLAILSI 528
           TMSTGLFLTTLSLGFFVSSFLV VVK+VTGS GGG GWLADNIN GRLD FYGLLA+L +
Sbjct: 483 TMSTGLFLTTLSLGFFVSSFLVMVVKRVTGSNGGGQGWLADNINYGRLDCFYGLLAVLGV 542

Query: 529 INLVIYLICAVWYKPKKP--KAGIQMETYVKGSSAEEKC 565
           +N V+YLICA+WYKP+     A +QME    GS AEEKC
Sbjct: 543 VNFVVYLICALWYKPRNSAKSAALQMENVGNGSLAEEKC 581

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738942|emb|CBI28187.3| unnamed protein product [Vitis vinifera]

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/576 (79%), Positives = 512/576 (88%), Gaps = 11/576 (1%)

Query: 1   MSWAVADAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPS 50
           MSW VADAVDYKG PAD SKTG          IE+CERLSTMGIAVNLVTYLV TMHLPS
Sbjct: 1   MSWTVADAVDYKGFPADRSKTGGWVPAALILGIEICERLSTMGIAVNLVTYLVSTMHLPS 60

Query: 51  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 110
           ATSAN VTDFMGTSFLLCLLGGFLAD+FLGR++TIAIFA VQ +GTGMLA++T+L QL+P
Sbjct: 61  ATSANTVTDFMGTSFLLCLLGGFLADSFLGRFRTIAIFATVQAMGTGMLAIITRLPQLQP 120

Query: 111 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
            PCK T T TC+QA+GFQMG+LY+ALYLIALGTGGLKSSVSGFGTDQFD+KDEKE++QM 
Sbjct: 121 PPCKNTPTQTCKQANGFQMGILYLALYLIALGTGGLKSSVSGFGTDQFDDKDEKEQSQMI 180

Query: 171 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 230
           YFFSRFFFFIS GTLMAVTVLVYIQDE+SRS+GYGIC V+M +AI+++ +GTKRYRYKKS
Sbjct: 181 YFFSRFFFFISTGTLMAVTVLVYIQDEVSRSLGYGICCVSMLIAILVYFSGTKRYRYKKS 240

Query: 231 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVA-EGD 289
            GSPIVHI QVIVAA++KRKMDLP N  +LYED+ E SRI HT+QF  LDKAAI+A E D
Sbjct: 241 VGSPIVHISQVIVAAMRKRKMDLPFNASLLYEDSAEGSRIQHTDQFRCLDKAAILAGEFD 300

Query: 290 FEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG 349
             A S PNPWKLCSVT VEEVKM+ARLLPIWATTIIFWTTYAQMITFSVEQA+TMERSIG
Sbjct: 301 KTASSDPNPWKLCSVTRVEEVKMMARLLPIWATTIIFWTTYAQMITFSVEQASTMERSIG 360

Query: 350 RFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAA 409
            FQIPAGSLTVFFV+AILITLAVYDR IMP+WKKW+GKPGF++LQR+A+GL+LSIVGM A
Sbjct: 361 NFQIPAGSLTVFFVAAILITLAVYDRFIMPMWKKWRGKPGFSSLQRIALGLILSIVGMTA 420

Query: 410 AALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 469
           AAL ER+RLSVA+AVG  TATLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+SPKGMK
Sbjct: 421 AALAERRRLSVAKAVGDNTATLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMK 480

Query: 470 TMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSII 529
           TMSTGLFL+TLSLGFFVSSFLV+VVK+VTGS+ G GWLADNIN GRLD FYGLLAILS I
Sbjct: 481 TMSTGLFLSTLSLGFFVSSFLVSVVKRVTGSRDGQGWLADNINYGRLDCFYGLLAILSFI 540

Query: 530 NLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 565
           N  ++L+CAVWYKP+KP  G+QMET   GS  EEKC
Sbjct: 541 NFAVFLVCAVWYKPQKPNDGMQMETMANGSCPEEKC 576

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445474|ref|XP_002281975.1| PREDICTED: nitrate transporter 1.4-like [Vitis vinifera]

 Score =  882 bits (2279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/576 (79%), Positives = 512/576 (88%), Gaps = 11/576 (1%)

Query: 1   MSWAVADAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPS 50
           MSW VADAVDYKG PAD SKTG          IE+CERLSTMGIAVNLVTYLV TMHLPS
Sbjct: 5   MSWTVADAVDYKGFPADRSKTGGWVPAALILGIEICERLSTMGIAVNLVTYLVSTMHLPS 64

Query: 51  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 110
           ATSAN VTDFMGTSFLLCLLGGFLAD+FLGR++TIAIFA VQ +GTGMLA++T+L QL+P
Sbjct: 65  ATSANTVTDFMGTSFLLCLLGGFLADSFLGRFRTIAIFATVQAMGTGMLAIITRLPQLQP 124

Query: 111 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
            PCK T T TC+QA+GFQMG+LY+ALYLIALGTGGLKSSVSGFGTDQFD+KDEKE++QM 
Sbjct: 125 PPCKNTPTQTCKQANGFQMGILYLALYLIALGTGGLKSSVSGFGTDQFDDKDEKEQSQMI 184

Query: 171 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 230
           YFFSRFFFFIS GTLMAVTVLVYIQDE+SRS+GYGIC V+M +AI+++ +GTKRYRYKKS
Sbjct: 185 YFFSRFFFFISTGTLMAVTVLVYIQDEVSRSLGYGICCVSMLIAILVYFSGTKRYRYKKS 244

Query: 231 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVA-EGD 289
            GSPIVHI QVIVAA++KRKMDLP N  +LYED+ E SRI HT+QF  LDKAAI+A E D
Sbjct: 245 VGSPIVHISQVIVAAMRKRKMDLPFNASLLYEDSAEGSRIQHTDQFRCLDKAAILAGEFD 304

Query: 290 FEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG 349
             A S PNPWKLCSVT VEEVKM+ARLLPIWATTIIFWTTYAQMITFSVEQA+TMERSIG
Sbjct: 305 KTASSDPNPWKLCSVTRVEEVKMMARLLPIWATTIIFWTTYAQMITFSVEQASTMERSIG 364

Query: 350 RFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAA 409
            FQIPAGSLTVFFV+AILITLAVYDR IMP+WKKW+GKPGF++LQR+A+GL+LSIVGM A
Sbjct: 365 NFQIPAGSLTVFFVAAILITLAVYDRFIMPMWKKWRGKPGFSSLQRIALGLILSIVGMTA 424

Query: 410 AALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 469
           AAL ER+RLSVA+AVG  TATLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+SPKGMK
Sbjct: 425 AALAERRRLSVAKAVGDNTATLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMK 484

Query: 470 TMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSII 529
           TMSTGLFL+TLSLGFFVSSFLV+VVK+VTGS+ G GWLADNIN GRLD FYGLLAILS I
Sbjct: 485 TMSTGLFLSTLSLGFFVSSFLVSVVKRVTGSRDGQGWLADNINYGRLDCFYGLLAILSFI 544

Query: 530 NLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 565
           N  ++L+CAVWYKP+KP  G+QMET   GS  EEKC
Sbjct: 545 NFAVFLVCAVWYKPQKPNDGMQMETMANGSCPEEKC 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563024|ref|XP_003549766.1| PREDICTED: nitrate transporter 1.4-like [Glycine max]

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/583 (76%), Positives = 505/583 (86%), Gaps = 20/583 (3%)

Query: 1   MSWAVADAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPS 50
           MSW VADAVDYKG PAD SKTG          IE+ ERLSTMGIAVNLVTY++  MHLPS
Sbjct: 1   MSWTVADAVDYKGFPADRSKTGGWVPAALILGIEIVERLSTMGIAVNLVTYMISIMHLPS 60

Query: 51  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 110
           +T+AN VTDFMGTSFLLCLLGGFLAD+FLGRYKTI IFA++QTLGT  LA+ TKL  LRP
Sbjct: 61  STAANTVTDFMGTSFLLCLLGGFLADSFLGRYKTIGIFASIQTLGTATLAISTKLPGLRP 120

Query: 111 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
            PC    + +C+QA+GFQMG+LY++LYLIALGTGGLKSSVSGFG+DQFDEKDEKEK+QMA
Sbjct: 121 PPCHAN-SDSCKQANGFQMGILYLSLYLIALGTGGLKSSVSGFGSDQFDEKDEKEKSQMA 179

Query: 171 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 230
           YFF+RFFFFIS GTL AVTVLVY+QDE+SRS+ YGICSV+M +AII+FL+GTKRYRYK+S
Sbjct: 180 YFFNRFFFFISFGTLAAVTVLVYLQDEVSRSLAYGICSVSMIIAIIVFLSGTKRYRYKRS 239

Query: 231 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDF 290
            GSPIVHIFQVI A+IKKRKM LP NVG LYEDTPEASRI HTEQF FL+KAAIVAE DF
Sbjct: 240 LGSPIVHIFQVIAASIKKRKMQLPYNVGSLYEDTPEASRIEHTEQFRFLEKAAIVAEDDF 299

Query: 291 E---AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERS 347
           E    GS PNPWKLCS+T VEEVKM+ RLLP+WATTIIFWT YAQ+ITFSVEQA+TMER+
Sbjct: 300 ETNLCGSGPNPWKLCSLTRVEEVKMMVRLLPVWATTIIFWTIYAQLITFSVEQASTMERN 359

Query: 348 IGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGM 407
           IG FQIPAGS+TVFFV+AILITLAVYDRLIMPLWKKW GKPGFT+LQR+AIGLV SI GM
Sbjct: 360 IGSFQIPAGSVTVFFVAAILITLAVYDRLIMPLWKKWNGKPGFTDLQRIAIGLVFSIFGM 419

Query: 408 AAAALVERKRLSVARAV---GLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKS 464
           AAA++ ERKRLSVA++V      T TLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+S
Sbjct: 420 AAASVCERKRLSVAKSVSGGNQATTTLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITRS 479

Query: 465 PKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLA 524
           PKGMKTMSTGLFLTTLSLGFF SSFLV+VVKKVTG++ G GWLAD+IN+GRLDLFY LL 
Sbjct: 480 PKGMKTMSTGLFLTTLSLGFFFSSFLVSVVKKVTGTRDGQGWLADSINKGRLDLFYALLT 539

Query: 525 ILSIINLVIYLICAVWYKPKKPK--AGIQMETYVKGSSAEEKC 565
           ILS +N   + +CAVW+KPKKPK  A +QM   V GS+AEEKC
Sbjct: 540 ILSFVNFAAFAVCAVWFKPKKPKQPAAMQMGP-VNGSTAEEKC 581

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548591|ref|XP_003542684.1| PREDICTED: nitrate transporter 1.4-like [Glycine max]

 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/578 (76%), Positives = 497/578 (85%), Gaps = 21/578 (3%)

Query: 1   MSWAVADAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPS 50
           MSW VADAV+YKG PAD SKTG          IE+ ERLSTMGIAVNLVTY++  MHLPS
Sbjct: 5   MSWTVADAVNYKGFPADRSKTGGWVPAALILGIEIVERLSTMGIAVNLVTYMISIMHLPS 64

Query: 51  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 110
           +T+AN VTDFMGTSFLLCLLGGFLAD+FLGRYKTI IFA++QTLGT  LA+ TKL  LRP
Sbjct: 65  STAANTVTDFMGTSFLLCLLGGFLADSFLGRYKTIGIFASIQTLGTATLAISTKLPGLRP 124

Query: 111 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
            PC    + +C+QA+GFQMG+LY++LYLIALGTGGLKSSVSGFG+DQFDEKDEKEK+QMA
Sbjct: 125 PPCHAN-SDSCKQANGFQMGILYLSLYLIALGTGGLKSSVSGFGSDQFDEKDEKEKSQMA 183

Query: 171 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 230
           YFF+RFFFFIS GTL AVTVLVY+QDE+SRS+ YGICSV+M +AII+FL+GTKRYRYK+S
Sbjct: 184 YFFNRFFFFISFGTLAAVTVLVYLQDEVSRSLAYGICSVSMIIAIIVFLSGTKRYRYKRS 243

Query: 231 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDF 290
            GSPIVHIFQVI A+IKKRK  LP NVG LYEDTPEASRI HTEQF FL+KAAIVAEGDF
Sbjct: 244 LGSPIVHIFQVIAASIKKRKRQLPYNVGSLYEDTPEASRIEHTEQFRFLEKAAIVAEGDF 303

Query: 291 E---AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERS 347
           E    GS  NPWKLCS+T VEEVKM+ RLLP+WATTIIFWT YAQMITFSVEQA+TMER+
Sbjct: 304 ETNVCGSESNPWKLCSLTRVEEVKMMVRLLPVWATTIIFWTIYAQMITFSVEQASTMERN 363

Query: 348 IGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGM 407
           IG FQIPAGSLTVFFV+AILITLAVYDRLIMPLWKKW GKPGFT+LQR+AIGLV SI GM
Sbjct: 364 IGSFQIPAGSLTVFFVAAILITLAVYDRLIMPLWKKWNGKPGFTDLQRIAIGLVFSIFGM 423

Query: 408 AAAALVERKRLSVARAV--GLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP 465
           AAA++ ERKRLS A++V  G    TLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+SP
Sbjct: 424 AAASVCERKRLSAAKSVSGGNQATTLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITRSP 483

Query: 466 KGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAI 525
           KGMKTMSTGLFLTTLSLGFF+SSFLV+VVKKVTG++ G GWLADNIN+GRLDLFY LL I
Sbjct: 484 KGMKTMSTGLFLTTLSLGFFISSFLVSVVKKVTGTRDGQGWLADNINKGRLDLFYALLTI 543

Query: 526 LSIINLVIYLICAVWYKPKKPKA-----GIQMETYVKG 558
           LS IN V + +CA+W+KPKKPK      G Q    V+G
Sbjct: 544 LSFINFVAFAVCALWFKPKKPKQPAMQMGPQQRKSVEG 581

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|430736183|gb|AGA60121.1| nitrate transporter NRT1.4B [Cucumis sativus]

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/579 (77%), Positives = 496/579 (85%), Gaps = 18/579 (3%)

Query: 1   MSWAVADAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPS 50
           +SW VADAVDYKG PAD SKTG          IE+CERLSTMGIAVNLVTYL G MHLPS
Sbjct: 6   LSWTVADAVDYKGFPADKSKTGGWIPAALILGIEICERLSTMGIAVNLVTYLGGVMHLPS 65

Query: 51  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 110
           A SANIVTDFMGT FLLCLLGGFLAD+FLGRY TI I A +QTLGT  LA+ TKL QLRP
Sbjct: 66  AASANIVTDFMGTCFLLCLLGGFLADSFLGRYYTILISALIQTLGTAALAVSTKLPQLRP 125

Query: 111 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
            PC    T TC++A+GFQMG+LY+ALYLIALGTGGLKSS+SGFGTDQFD+ DEKEK +MA
Sbjct: 126 PPCD--GTKTCKEANGFQMGILYLALYLIALGTGGLKSSISGFGTDQFDDTDEKEKAKMA 183

Query: 171 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 230
           YFF+RFFFFIS GTLMAVTVLVYIQDE+ RS  YGICSV+M  AI++FL+GTKRYRYKKS
Sbjct: 184 YFFNRFFFFISTGTLMAVTVLVYIQDEVGRSWAYGICSVSMLGAILLFLSGTKRYRYKKS 243

Query: 231 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPE-ASRIHHTEQFHFLDKAAIVAEGD 289
            GSP+VHI QVI AAIKKRK++LP NVG+LYED+P+ ASRI HT+QF FLDKAAIVAEGD
Sbjct: 244 MGSPVVHILQVIAAAIKKRKLELPQNVGLLYEDSPDQASRIEHTKQFQFLDKAAIVAEGD 303

Query: 290 FE---AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 346
           FE   A S  NPWKL SVT VEEVKM+ARLLPIWATTIIFWTTYAQMITFSV+QA+TMER
Sbjct: 304 FEKHGAVSALNPWKLSSVTRVEEVKMMARLLPIWATTIIFWTTYAQMITFSVQQASTMER 363

Query: 347 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVG 406
           SIG FQIPAGSLTVFFV+AILITL VYDRLIMPLWKKWKGK GFTN+QRMAIGLVLSI+G
Sbjct: 364 SIGSFQIPAGSLTVFFVAAILITLGVYDRLIMPLWKKWKGKQGFTNIQRMAIGLVLSILG 423

Query: 407 MAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK 466
           MAAAAL E KRL VA+AVG  T TLP+SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK
Sbjct: 424 MAAAALAESKRLGVAKAVGGDTTTLPISVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK 483

Query: 467 GMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAIL 526
           GMKTMSTGLFL+TLSLGFF+SSFLV+VVK+VTG+  G GWLADN+N GRLD FYGLL IL
Sbjct: 484 GMKTMSTGLFLSTLSLGFFISSFLVSVVKRVTGND-GEGWLADNVNYGRLDCFYGLLTIL 542

Query: 527 SIINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 565
           SIIN V +L+C +WY P+K K   Q    V G+ AEEKC
Sbjct: 543 SIINFVAFLVCVIWYMPQKRK-DFQKNGIVNGNLAEEKC 580

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466528|ref|XP_004150978.1| PREDICTED: nitrate transporter 1.4-like [Cucumis sativus] gi|449522758|ref|XP_004168393.1| PREDICTED: nitrate transporter 1.4-like [Cucumis sativus]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/579 (77%), Positives = 496/579 (85%), Gaps = 18/579 (3%)

Query: 1   MSWAVADAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPS 50
           +SW VADAVDYKG PAD SKTG          IE+CERLSTMGIAVNLVTYL G MHLPS
Sbjct: 25  LSWTVADAVDYKGFPADKSKTGGWIPAALILGIEICERLSTMGIAVNLVTYLGGVMHLPS 84

Query: 51  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 110
           A SANIVTDFMGT FLLCLLGGFLAD+FLGRY TI I A +QTLGT  LA+ TKL QLRP
Sbjct: 85  AASANIVTDFMGTCFLLCLLGGFLADSFLGRYYTILISALIQTLGTAALAVSTKLPQLRP 144

Query: 111 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 170
            PC    T TC++A+GFQMG+LY+ALYLIALGTGGLKSS+SGFGTDQFD+ DEKEK +MA
Sbjct: 145 PPCD--GTKTCKEANGFQMGILYLALYLIALGTGGLKSSISGFGTDQFDDTDEKEKAKMA 202

Query: 171 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 230
           YFF+RFFFFIS GTLMAVTVLVYIQDE+ RS  YGICSV+M  AI++FL+GTKRYRYKKS
Sbjct: 203 YFFNRFFFFISTGTLMAVTVLVYIQDEVGRSWAYGICSVSMLGAILLFLSGTKRYRYKKS 262

Query: 231 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPE-ASRIHHTEQFHFLDKAAIVAEGD 289
            GSP+VHI QVI AAIKKRK++LP NVG+LYED+P+ ASRI HT+QF FLDKAAIVAEGD
Sbjct: 263 MGSPVVHILQVIAAAIKKRKLELPQNVGLLYEDSPDQASRIEHTKQFQFLDKAAIVAEGD 322

Query: 290 FE---AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 346
           FE   A S  NPWKL SVT VEEVKM+ARLLPIWATTIIFWTTYAQMITFSV+QA+TMER
Sbjct: 323 FEKHGAVSALNPWKLSSVTRVEEVKMMARLLPIWATTIIFWTTYAQMITFSVQQASTMER 382

Query: 347 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVG 406
           SIG FQIPAGSLTVFFV+AILITL VYDRLIMPLWKKWKGK GFTN+QRMAIGLVLSI+G
Sbjct: 383 SIGSFQIPAGSLTVFFVAAILITLGVYDRLIMPLWKKWKGKQGFTNIQRMAIGLVLSILG 442

Query: 407 MAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK 466
           MAAAAL E KRL VA+AVG  T TLP+SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK
Sbjct: 443 MAAAALAESKRLGVAKAVGGDTTTLPISVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK 502

Query: 467 GMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAIL 526
           GMKTMSTGLFL+TLSLGFF+SSFLV+VVK+VTG+  G GWLADN+N GRLD FYGLL IL
Sbjct: 503 GMKTMSTGLFLSTLSLGFFISSFLVSVVKRVTGND-GEGWLADNVNYGRLDCFYGLLTIL 561

Query: 527 SIINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 565
           SIIN V +L+C +WY P+K K   Q    V G+ AEEKC
Sbjct: 562 SIINFVAFLVCVIWYMPQKRK-DFQKNGIVNGNLAEEKC 599

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	565
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.985	0.965	0.673	1.6e-198
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.959	0.918	0.504	7.2e-139
TAIR|locus:2089935	590	AT3G21670 [Arabidopsis thalian	0.923	0.884	0.447	5.6e-116
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.955	0.923	0.389	1.1e-101
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.943	0.935	0.390	5e-99
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.918	0.910	0.390	2.2e-98
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.950	0.910	0.370	2.8e-98
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.916	0.869	0.403	3.3e-95
TAIR|locus:2033776	614	NRT1.5 "nitrate transporter 1.	0.943	0.868	0.360	4e-90
TAIR|locus:2025886	591	AT1G59740 [Arabidopsis thalian	0.939	0.898	0.354	2.3e-87

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 1922 (681.6 bits), Expect = 1.6e-198, P = 1.6e-198
 Identities = 388/576 (67%), Positives = 442/576 (76%)

Query:     2 SWAVADAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPSA 51
             SW VADAVDYKG PAD SKTG          IE+ ERLSTMGIAVNLVTYL+ TMHLPS+
Sbjct:     6 SWTVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSS 65

Query:    52 TSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR 111
             TSANIVTDFMGTSFLLCLLGGFLAD+FLGR+KTI IF+ +Q LGTG LA+ TKL +LRP 
Sbjct:    66 TSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPP 125

Query:   112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 171
              C       C  A+ FQM +LY++LYLIALGTGGLKSS+SGFG+DQFD+KD KEK  MA+
Sbjct:   126 TCHHG--EACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAF 183

Query:   172 XXXXXXXXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSS 231
                     IS+GTL+AVTVLVY+QDE+ RS  YGIC+V+M +AI+IFL GTKRYRYKKS 
Sbjct:   184 FFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQ 243

Query:   232 GSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFE 291
             GSP+V IFQVI AA +KRKM+LP ++  LYED PE  RI HT+QFH LDKAAIVAEGDFE
Sbjct:   244 GSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGIRIEHTDQFHLLDKAAIVAEGDFE 303

Query:   292 A---G-STPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERS 347
                 G + PNPWKL SVT VEEVKM+ RLLPIWATTIIFWTTYAQMITFSVEQA+TM R+
Sbjct:   304 QTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRN 363

Query:   348 IGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGM 407
             IG F+IPAGSLTVFFV+AILITLAVYDR IMP WKKWKGKPGF++LQR+AIGLVLS  GM
Sbjct:   364 IGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKPGFSSLQRIAIGLVLSTAGM 423

Query:   408 AAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKG 467
             AAAALVE+KRLSVA++   +  TLP+SVFLL+PQFFLVGAGEAFIYTGQLDFFIT+SPKG
Sbjct:   424 AAAALVEQKRLSVAKSS--SQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKG 481

Query:   468 MKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLLAILS 527
             MK                                    WLADNIN GRLD FY LL ILS
Sbjct:   482 MKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYFYWLLVILS 541

Query:   528 IINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEE 563
              IN V+Y+ICA+W+KP K K  ++ E   KG S E+
Sbjct:   542 GINFVVYIICALWFKPTKGKDSVEKENG-KGFSVED 576

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1359 (483.5 bits), Expect = 7.2e-139, P = 7.2e-139
 Identities = 289/573 (50%), Positives = 377/573 (65%)

Query:     7 DAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPSATSANI 56
             DA D++G PAD SKTG          IE  ERL+T+GI VNLVTYL GTMHL +AT+AN 
Sbjct:    14 DAWDFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANT 73

Query:    57 VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET 116
             VT+F+GTSF+LCLLGGF+ADTFLGRY TIAIFAA+Q  G  +L + T +  LRP  C  T
Sbjct:    74 VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPT 133

Query:   117 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXX 176
              +  CEQASG Q+ VLY+ALYL ALGTGG+K+SVSGFG+DQFDE + KE+++M Y     
Sbjct:   134 TSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRF 193

Query:   177 XXXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIV 236
                I++G+L+AVTVLVY+QD++ R  GYGIC+ A+ +A+ +FLAGT RYR+KK  GSP+ 
Sbjct:   194 FFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMT 253

Query:   237 HIFQVIVAAIKKRKMDLPCNVGMLYE-D---TPEAS-----RIHHTEQFHFLDKAAIVAE 287
              +  VIVAA + RK++LP +   LY+ D     E S     ++ HTEQF  LDKAAI   
Sbjct:   254 QVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAI--- 310

Query:   288 GDFEAGSTPN---PWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTM 344
              D EAG T N    W L ++T VEEVK + R+LPIWAT I+FWT +AQ+ T SV Q+ T+
Sbjct:   311 RDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETL 370

Query:   345 ERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLS 403
             +RSIG F+IP  S+ VF+V  +L+T AVYDR+ + L KK    P G   LQR+ +GL   
Sbjct:   371 DRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFG 430

Query:   404 IVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK 463
              + MA AALVE KRL  A A G T  TLP+  +LLIPQ+ +VG GEA IYTGQLDFF+ +
Sbjct:   431 SMAMAVAALVELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRE 490

Query:   464 SPKGMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLL 523
              PKGMK                                    W+AD++N+GRL  FY L+
Sbjct:   491 CPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHP--WIADDLNKGRLYNFYWLV 548

Query:   524 AILSIINLVIYLICAVWY--KPKK-PKAGIQME 553
             A+L  +N +I+L+ + WY  K K+  + GI+++
Sbjct:   549 AVLVALNFLIFLVFSKWYVYKEKRLAEVGIELD 581

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2089935 AT3G21670 [Arabidopsis thaliana (taxid:3702)]

 Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
 Identities = 250/559 (44%), Positives = 339/559 (60%)

Query:     7 DAVDYKGSPADPSKTG----------IELCERLSTMGIAVNLVTYLVGTMHLPSATSANI 56
             +A DY+G+P D SKTG           EL ER+  MGI++NLVTYLVG +H+ SA SA I
Sbjct:    16 EAYDYRGNPPDKSKTGGWLGAGLILGSELSERICVMGISMNLVTYLVGDLHISSAKSATI 75

Query:    57 VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET 116
             VT+FMGT  LL LLGGFLAD  LGRYK +AI A+V  LG  +L + T +  +RP  C + 
Sbjct:    76 VTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTALGVLLLTVATTISSMRPPICDDF 135

Query:   117 AT--HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXX 174
                 H C +A+G Q+ +LY+ALY IALG GG+KS+VSGFG+DQFD  D KE+ QM +   
Sbjct:   136 RRLHHQCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFFFN 195

Query:   175 XXXXXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSP 234
                  IS+G+L AV  LVY+QD + R  GYGI +  M +A I+ L GTKRYR+KK  GSP
Sbjct:   196 RFYFSISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKGSP 255

Query:   235 IVHIFQVIVAAIKKRKMDLPCNVGML--YEDTPEASRIHHTEQFHFLDKAAIV------A 286
                I++V   A KKRK   P +  +L  Y++T     + HTE    LDKAAI       +
Sbjct:   256 FTTIWRVGFLAWKKRKESYPAHPSLLNGYDNTT----VPHTEMLKCLDKAAISKNESSPS 311

Query:   287 EGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 346
               DFE     +PW + +VT VEEVK+V +L+PIWAT I+FWT Y+QM TF+VEQAT M+R
Sbjct:   312 SKDFEE---KDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATFMDR 368

Query:   347 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLSIV 405
              +G F +PAGS + F +  IL+  ++ +R+ +PL ++   KP G T+LQR+ +GLV S+ 
Sbjct:   369 KLGSFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVFSMA 428

Query:   406 GMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP 465
              MA AA++E  R   A           +S F L+PQ+FLVGAGEAF Y GQL+FFI ++P
Sbjct:   429 AMAVAAVIENARREAA-----VNNDKKISAFWLVPQYFLVGAGEAFAYVGQLEFFIREAP 483

Query:   466 KGMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLLAI 525
             + MK                                    WL  N+N+ RL+ FY LL +
Sbjct:   484 ERMKSMSTGLFLSTISMGFFVSSLLVSLVDRVTDKS----WLRSNLNKARLNYFYWLLVV 539

Query:   526 LSIINLVIYLICAVWYKPK 544
             L  +N +I+++ A+ ++ K
Sbjct:   540 LGALNFLIFIVFAMKHQYK 558

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 219/562 (38%), Positives = 321/562 (57%)

Query:     3 WAVADAVDYKGSPADPSKTGI----------ELCERLSTMGIAVNLVTYLVGTMHLPSAT 52
             +A   +VD+ G+P    KTG           E CERL+  GIA NL+TYL   +H  + +
Sbjct:    24 YAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVS 83

Query:    53 SANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP 112
             +A  VT + GT +L  L+G  LAD + GRY TIA F+ +  +G   L +   +  L+P  
Sbjct:    84 AATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE 143

Query:   113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYX 172
             C       C  A+  Q  + +  LYLIALGTGG+K  VS FG DQFD+ D +E+ + A  
Sbjct:   144 C---IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASF 200

Query:   173 XXXXXXXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSG 232
                    I++G L++ ++LV+IQ+     +G+GI +V M +AI  F  GT  YR++K  G
Sbjct:   201 FNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGG 260

Query:   233 SPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS------RIHHTEQFHFLDKAAIVA 286
             SPI  I QV+VA+ +K  + +P +  +LYE   + S      +I HT+   +LDKAA+++
Sbjct:   261 SPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query:   287 EGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 346
             E + ++G   N W+LC+VT VEE+K++ R+ PIWA+ IIF   YAQM T  V+Q   M  
Sbjct:   321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query:   347 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKG-KPGFTNLQRMAIGLVLSIV 405
              IG FQ+P  +L  F  ++++I + +YDR I+PL +K+ G   GFT +QRM IGL +S++
Sbjct:   381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440

Query:   406 GMAAAALVERKRLSVARAVGLTT--ATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK 463
              MAAAA+VE  RL +A  +GL    A +P+SV   IPQ+F++GA E F + GQL+FF  +
Sbjct:   441 CMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQ 500

Query:   464 SPKGMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLL 523
             SP  M+                                    W++DN+N G LD F+ LL
Sbjct:   501 SPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLL 560

Query:   524 AILSIINLVIYLICAVWYKPKK 545
             A LS++N+ +Y   A  YK KK
Sbjct:   561 AGLSLVNMAVYFFSAARYKQKK 582

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
 Identities = 217/556 (39%), Positives = 312/556 (56%)

Query:     9 VDYKGSPADPSKTGI----------ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVT 58
             VD   +PA+  KTG           E CERL+  G+  NLV YL   ++  +AT+AN VT
Sbjct:    13 VDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVT 72

Query:    59 DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT 118
             ++ GT ++  L+G F+AD +LGRY TIA F  +   G  +L +   +  L+P  C     
Sbjct:    73 NWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCN---A 129

Query:   119 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXX 178
              TC   S  Q  V ++ALY+IALGTGG+K  VS FG DQFDE DE EK + +        
Sbjct:   130 DTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYF 188

Query:   179 XISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHI 238
              I++G L+A TVLV+IQ  +    G+G+ +VAM +A+  F  G++ YR ++  GSP+  I
Sbjct:   189 SINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRI 248

Query:   239 FQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIH------HTEQFHFLDKAAIVAEGDFEA 292
             FQVIVAA +K  + +P +  +L+E   + S I       HT+   F DKAA+ ++ D   
Sbjct:   249 FQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK 308

Query:   293 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGR-F 351
                 NPW+LCSVT VEE+K +  LLP+WAT I+F T Y+QM T  V Q  TM++ +G+ F
Sbjct:   309 DGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNF 368

Query:   352 QIPAGSLTVFFVSAILITLAVYDRLIMPLWKKW-KGKPGFTNLQRMAIGLVLSIVGMAAA 410
             +IP+ SL++F   ++L    VYD+ I+PL +K+ + + GFT LQRM IGLV+SI  M  A
Sbjct:   369 EIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITA 428

Query:   411 ALVERKRLSVARAVGL-TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 469
              ++E  RL   +         + +S+F  IPQ+ L+G  E F + GQL+FF  ++P  M+
Sbjct:   429 GVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMR 488

Query:   470 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLLAILSII 529
                                                 W+ DN+NRG LD F+ LLA LS +
Sbjct:   489 SLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFL 548

Query:   530 NLVIYLICAVWYKPKK 545
             N ++YL  +  YK KK
Sbjct:   549 NFLVYLWISKRYKYKK 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
 Identities = 208/533 (39%), Positives = 312/533 (58%)

Query:    22 GIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGR 81
             G E CERL+  G++ NL+ YL   M++ + +++  V+++ GT +   L+G F+AD +LGR
Sbjct:    37 GTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGR 96

Query:    82 YKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIAL 141
             Y TIA F  +   G  +L +   +  L P  C   +  TC   +G Q  + +IALYLIAL
Sbjct:    97 YWTIASFVVIYIAGMTLLTISASVPGLTPT-C---SGETCHATAG-QTAITFIALYLIAL 151

Query:   142 GTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXXXISLGTLMAVTVLVYIQDEISRS 201
             GTGG+K  VS FG DQFD+ DEKEK   +         I++G ++A +VLV+IQ  +   
Sbjct:   152 GTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWG 211

Query:   202 VGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLY 261
              G G+ +VAM +A++ F AG+  YR +K  GSP+  + QVIVA+ +K K+ +P +  +LY
Sbjct:   212 WGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLY 271

Query:   262 EDTP-EAS-----RIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVAR 315
             E+   E+S     ++ HT+   F DKAA+  E D +  +  + WKLC+VT VEE+K + R
Sbjct:   272 ENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIR 331

Query:   316 LLPIWATTIIFWTTYAQMITFSVEQATTMERSIG-RFQIPAGSLTVFFVSAILITLAVYD 374
             LLPIWAT I+F + Y+QM T  V Q  T+++ +G  F+IP+ SL++F   ++L    VYD
Sbjct:   332 LLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYD 391

Query:   375 RLIMPLWKKWKG-KPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGL-TTATLP 432
             +LI+P  +K+ G + GFT LQR+ IGLV+SI  M +A ++E  RL+  +   L    T+P
Sbjct:   392 KLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIP 451

Query:   433 VSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKXXXXXXXXXXXXXXXXXXXXXXX 492
             +++F  +PQ+FLVG  E F + GQL+FF  ++P  M+                       
Sbjct:   452 MTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVT 511

Query:   493 XXXXXXXXXXXXXWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKK 545
                          W+A N+N G LD F+ LLA LS +N ++YL  A WY  KK
Sbjct:   512 LVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKK 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 208/561 (37%), Positives = 320/561 (57%)

Query:     2 SWAVADAVDYKGSPADPSKTGI----------ELCERLSTMGIAVNLVTYLVGTMHLPSA 51
             S A   ++D  G+P    KTG           E CERL+  GIA NL+TY    +H  + 
Sbjct:    34 STAEDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNV 93

Query:    52 TSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR 111
             ++A+ V  + GT ++  L+G  +AD++ GRY TIA F+A+  +G  +L +   L  L+P 
Sbjct:    94 SAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPA 153

Query:   112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 171
              C   A   C  A+  Q  V +  LYLIALGTGG+K  VS FG DQFD+ D +E+ + A 
Sbjct:   154 ACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKAS 213

Query:   172 XXXXXXXXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSS 231
                     I++G+ ++ T+LV++Q+ +   +G+ I +V M ++I  F  GT  YR++K  
Sbjct:   214 FFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPG 273

Query:   232 GSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS------RIHHTEQFHFLDKAAIV 285
             GSPI  + QV+VAA +K K++LP ++  LYE   + S      +I HT+ + FLDKAA++
Sbjct:   274 GSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVI 333

Query:   286 AEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTME 345
             +E + ++G+  NPWKLC+VT VEEVK + R+ PIWA+ I++   Y+Q+ T  V+Q  +M 
Sbjct:   334 SEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMN 393

Query:   346 RSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLSI 404
             R I  F+IP  S  VF    +LI++ +YDR ++P  +++ G P G T+LQRM IGL LS+
Sbjct:   394 RIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSV 453

Query:   405 VGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKS 464
             + +AAAA+VE  RL +A+        + +S+F  IPQ+ L+G  E F + G+++FF  +S
Sbjct:   454 LSIAAAAIVETVRLQLAQDF------VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDES 507

Query:   465 PKGMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLLA 524
             P  M+                                    W+ D++N+G LD F+ LL 
Sbjct:   508 PDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLV 567

Query:   525 ILSIINLVIY-LICAVWYKPK 544
              L ++N+ +Y LIC    K K
Sbjct:   568 SLGLVNIPVYALICVKHTKKK 588

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 216/535 (40%), Positives = 305/535 (57%)

Query:    24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYK 83
             E+CE+L+ +G   N+++YL   +HLP   +AN +T+F GTS L  LLG F+AD+F GR+ 
Sbjct:    37 EICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFW 96

Query:    84 TIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGT 143
             TI   + +  +G  +L +   +  LRP PCK      C  A   Q+ +LY+AL L ALG+
Sbjct:    97 TITFASIIYQIGMTLLTISAIIPTLRPPPCK--GEEVCVVADTAQLSILYVALLLGALGS 154

Query:   144 GGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXXXISLGTLMAVTVLVYIQDEISRSVG 203
             GG++  V  FG DQFDE D  + T+           +    L+AVTVLV+IQD +   +G
Sbjct:   155 GGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLG 214

Query:   204 YGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLY-- 261
              GI +VAMF+++I F+ G + YR+   +GSP   + QV VAA +KRK+ +  +  +LY  
Sbjct:   215 LGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFN 274

Query:   262 -E-DTPEA--SRIHHTEQFHFLDKAAIVAEGD-FEAGSTPNPWKLCSVTSVEEVKMVARL 316
              E D P +   ++ HT+   FLDKAAIV E D  + G  PN W+L +V  VEE+K V R+
Sbjct:   275 DEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEELKSVIRM 334

Query:   317 LPIWATTIIFWTTYAQMITFSVEQATTMERSI-GRFQIPAGSLTVFFVSAILITLAVYDR 375
              PI A+ I+  T YAQ  TFS++QA TM R +   FQIPAGS++VF   A+L T+  YDR
Sbjct:   335 GPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDR 394

Query:   376 LIMPLWKKWKG-KPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTT---ATL 431
             + + + +K+ G + G T L RM IG V+SI+    A  VE KR SVA   GL       +
Sbjct:   395 VFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIV 454

Query:   432 PVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKXXXXXXXXXXXXXXXXXXXXXX 491
             P+S   LIPQ+ L G  EAF+  G L+FF  ++P+ M+                      
Sbjct:   455 PISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLV 514

Query:   492 XXXXXXXXXXXXXXWLADN-INRGRLDLFYGLLAILSIINLVIYLICA-VW-YKP 543
                           WL DN +NRGRL+ FY L+ +L  +NLV YL CA ++ YKP
Sbjct:   515 TLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYKP 569

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 202/560 (36%), Positives = 310/560 (55%)

Query:     9 VDYKGSPADPSKTG-------IELCERLSTM---GIAVNLVTYLVGTMHLPSATSANIVT 58
             VDY G P+  S +G       I L + L+T+   G+ VNLV +L   +   +A +AN V+
Sbjct:    26 VDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFGVGVNLVLFLTRVLQQNNADAANNVS 85

Query:    59 DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT 118
              + GT ++  L+G FL+D++ GRYKT AIF  +  +G   L++ + +  +RPR C +  T
Sbjct:    86 KWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLSSLSLSSYMFLIRPRGCGDEVT 145

Query:   119 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXX 178
               C   S  ++ + Y ++YLIALG GG + +++  G DQFDE+  KE             
Sbjct:   146 -PCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYSKIAFFSYFYL 204

Query:   179 XISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHI 238
              ++LG+L + T+L Y +DE   ++G+   + +  + +I+FL GT RYRY K +G+P+   
Sbjct:   205 ALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYFKPTGNPLSRF 264

Query:   239 FQVIVAAIKKRKMDLPCNVGM--LYEDTPE---AS-----RIHHTEQFHFLDKAAIVAEG 288
              QV+VAA KK  ++ P   G   +Y+   E   AS     RI HT++F FLDKAA +   
Sbjct:   265 CQVLVAATKKSSVEAPLR-GREEMYDGDSEGKNASVNTGRRIVHTDEFKFLDKAAYITAR 323

Query:   289 DFE--AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 346
             D +     + NPW+LC VT VEEVK + RL+PIW  TII+   + QM +  VEQ   M  
Sbjct:   324 DLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQMASLFVEQGAAMNT 383

Query:   347 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWK--GKPGFTNLQRMAIGLVLSI 404
             S+  F+IP  S++ F + ++ + + +Y R++ P+  ++K  G  G T L RM IGLV+++
Sbjct:   384 SVSDFKIPPASMSSFDILSVALFIFLYRRVLEPVANRFKKNGSKGITELHRMGIGLVIAV 443

Query:   405 VGMAAAALVERKRLSVA-RAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK 463
             + M AA +VE  RL  A ++      +  +S+F   PQ+ L+GA E F+Y GQL+FF  +
Sbjct:   444 IAMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAPQYSLIGASEVFMYVGQLEFFNAQ 503

Query:   464 SPKGMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLL 523
             +P G+K                                    W+  N+N+G LD FY LL
Sbjct:   504 TPDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTEDHMPGWIPRNLNKGHLDRFYFLL 563

Query:   524 AILSIINLVIYLICAVWYKP 543
             A L+ I+LV+Y+ CA WYKP
Sbjct:   564 AALTSIDLVVYIACAKWYKP 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010167 "response to nitrate" evidence=IEP;RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA;IMP

GO:0042128 "nitrate assimilation" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009734 "auxin mediated signaling pathway" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 199/561 (35%), Positives = 308/561 (54%)

Query:     2 SWAVAD--AVDYKGSPADPSKTG-------IELCERLSTMGIAV---NLVTYLVGTMHLP 49
             +W +A+  +VD++G P++P+K G       +   +    MGIA    NL+TY++  MH P
Sbjct:    21 NWELAEEESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFP 80

Query:    50 SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLR 109
              + +ANIVT+F+GT F+  LLGG+L+D FLG + TI IF  V+  G  +L++   L QL+
Sbjct:    81 LSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLK 140

Query:   110 PRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 169
             P  C      TCE+A GF+  + ++ALYL+ALG+G +K ++   G DQF +   K+  ++
Sbjct:   141 PPKCNPLIDQTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRL 200

Query:   170 AYXXXXXXXXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKK 229
             +          S+G L+A+T+LV++Q      +G+G+ + AM M II  ++GT  +R K+
Sbjct:   201 SSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKR 260

Query:   230 SSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLY------EDTPEASRIHHTEQFHFLDKAA 283
                S    I  VIVAAI KRK+  P +  ML+       D   +S + HT +F FLDKA 
Sbjct:   261 PRRSIFTPIAHVIVAAILKRKLASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFLDKAC 320

Query:   284 IVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATT 343
             I  +   +  +  +PW+LC+VT VE+VK +  L+PI+A+TI+F T  AQ+ TFSV+Q ++
Sbjct:   321 IKIQ---DTNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSS 377

Query:   344 MERSIGR-FQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKG-KPGFTNLQRMAIGLV 401
             M   +   F IP  SL       ++  + +YD  ++P  +K  G   G   L R+ IGL 
Sbjct:   378 MNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLF 437

Query:   402 LSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFI 461
             LS   M +AA++E+KR    R   +    + +S+F + PQF + G  E F   G ++FF 
Sbjct:   438 LSTFSMVSAAMLEKKR----RDSSVLDGRI-LSIFWITPQFLIFGISEMFTAVGLIEFFY 492

Query:   462 TKSPKGMKXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADN-INRGRLDLF 519
              +S KGM+                                     WL +N +N+ RLDLF
Sbjct:   493 KQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLNKDRLDLF 552

Query:   520 YGLLAILSIINLVIYLICAVW 540
             Y LLA+LS++N + YL  + W
Sbjct:   553 YWLLAVLSLLNFLSYLFWSRW 573

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SZY4	PTR27_ARATH	No assigned EC number	0.7309	0.9858	0.9653	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016880001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (576 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	565
pfam00854	372	pfam00854, PTR2, POT family	1e-79
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	2e-34
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	4e-28
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	9e-18
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	4e-08
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	3e-07
PRK10207	489	PRK10207, PRK10207, dipeptide/tripeptide permease	1e-06

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  254 bits (652), Expect = 1e-79
 Identities = 130/404 (32%), Positives = 196/404 (48%), Gaps = 39/404 (9%)

Query: 82  YKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIAL 141
           +KTI + + +  +G  +L +                       S  Q+ + YI LYLIAL
Sbjct: 1   FKTILLGSIIYAIGHVLLTL----------------GAIPPSLSPVQVALFYIGLYLIAL 44

Query: 142 GTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRS 201
           GTGG+K +VS FG DQFDE  +    +   FFS F+F I+ G+L+A  +  Y+Q  +   
Sbjct: 45  GTGGIKPNVSAFGADQFDETQDP---RRDGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101

Query: 202 VGYGICSVAMFMAIIIFLAGTKRYRYKKSSGS--PIVHIFQVIVAAIKKRKMDLPCNVGM 259
           +G+G+ +V M +A+++FL G++RY+ K   G     V I  +I AA K RK+ LP +   
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW 161

Query: 260 LYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKL-CSVTSVEEVKMVARLLP 318
           LY    + ++   ++       A I              W L     SV  ++ +  +LP
Sbjct: 162 LYWALEKYNKRSISQTKVHTRVAVIFIPLPKF-------WALFDQQGSVWLLQAILLMLP 214

Query: 319 IWATTIIFWTTYAQMITFSVEQATTMERSIGR-FQIPAGSLTVFFVSAILITLAVYDRLI 377
           IWA  I+    + Q+ T  V Q  TM+R I   F+IP  S   F   A+LI L + D L+
Sbjct: 215 IWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLV 274

Query: 378 MPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLT--TATLPVSV 435
            PL    + K G T  QR  +G+ + IV    AA+VE KR   A A+GLT    T+P+ +
Sbjct: 275 YPL---LRLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLFI 331

Query: 436 FLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTT 479
              +P+ F+ G G A    G L+F     P  M ++ T L    
Sbjct: 332 LWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  136 bits (344), Expect = 2e-34
 Identities = 100/478 (20%), Positives = 181/478 (37%), Gaps = 59/478 (12%)

Query: 23  IELCERLSTMGIAVNLVTYLV----GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF 78
           +EL ER S  G+   L+ YL       +      +  + + +    +L  ++GG+LAD  
Sbjct: 29  VELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRV 88

Query: 79  LGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYL 138
           LG  +TI + A +  +G  +LA+                      +S    G LYI L L
Sbjct: 89  LGTRRTIVLGAILMAIGHLVLAI----------------------SSVSGPGGLYIGLAL 126

Query: 139 IALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEI 198
           I +GTG  K ++S    + + + D     +    F+ F+  I++G+L+A  +   +    
Sbjct: 127 IIVGTGLFKPNISSLLGELYPKDD----PRRDGGFTLFYMGINIGSLIAPIITGLLAINY 182

Query: 199 SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVG 258
              VG+G+ +V M + ++IFL G +     K  G            +       L   V 
Sbjct: 183 GWHVGFGLAAVGMIIGLVIFLLGRRHV---KGIGGVPDPNPL----SFNFLLPVLGGLVV 235

Query: 259 MLYEDTPEASRIHHTEQFHF-LDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLL 317
           M+       + + +   F   L   +I+    + A               +E + +   +
Sbjct: 236 MILAAL--LTLLLNQNTFSGVLLVISILIAIIYFA--EAFRSPKVF----DERRRLLAAI 287

Query: 318 PIWATTIIFWTTYAQMITFSVEQATTME-RSIGRFQIPAGSLTVFFVSAILITLAVYDRL 376
           P++   +IFW  Y QM +     A     R I  F++P           I++   +   L
Sbjct: 288 PLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAAL 347

Query: 377 IMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVF 436
              L +  K         + A+GL+L+ +G     L            GL      VSV+
Sbjct: 348 WTKLGRGNKQPSTPI---KFALGLILAGLGFLILLLAGIWF---GGPSGL------VSVW 395

Query: 437 LLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVV 494
            L+  + L   GE FI    L      +P  +K+    ++  T++ G  +   +  + 
Sbjct: 396 WLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLT 453

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  118 bits (298), Expect = 4e-28
 Identities = 103/386 (26%), Positives = 175/386 (45%), Gaps = 60/386 (15%)

Query: 38  LVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG 97
           LV YL+  +     T+ NI   F    +L  L+G  +AD++LG++KTI   + V  +G  
Sbjct: 10  LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGH- 68

Query: 98  MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQ 157
            LA +  +  L          H    A         + L LIALGTGG+K  VS FG DQ
Sbjct: 69  ALASLGAVPSL---------GHPLHDALSL------VGLALIALGTGGIKPCVSAFGGDQ 113

Query: 158 FDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTV-------LVYIQDEISRSVGYGICSVA 210
           F+E+    + +   FFS F+F I+ G+L +  +       +     +    + +G+  + 
Sbjct: 114 FEERQLSLRFR---FFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGIL 170

Query: 211 MFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRI 270
           M +A+I+F  G+K Y+ K   G+ +  + + IV A+KKR                  +R 
Sbjct: 171 MTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR----------------FRTRS 214

Query: 271 HHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTY 330
               + H+LD AA                       +   K + R+L ++    +FW  +
Sbjct: 215 EDWPRLHWLDWAAPKYLIRM----------------IRSTKRLLRVLFLFIPLPMFWALF 258

Query: 331 AQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGF 390
            Q  +    QAT M+  +G F I    +       +LI + ++D ++ P   K   +  F
Sbjct: 259 DQQGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIFDYVVYPALAKCGTR--F 316

Query: 391 TNLQRMAIGLVLSIVGMAAAALVERK 416
           T+L++MA+G++L+ +  A AAL++ K
Sbjct: 317 TSLRKMAVGMLLAALAFAVAALLQNK 342

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 85.7 bits (212), Expect = 9e-18
 Identities = 92/477 (19%), Positives = 174/477 (36%), Gaps = 67/477 (14%)

Query: 23  IELCERLSTMGIAVNLVTYLV--GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLG 80
           +EL ER S  G+   L  YLV    +      +  I   +    +LL  +G +  D   G
Sbjct: 18  VELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWG 77

Query: 81  RYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIA 140
             KT+ +   V  LG  MLAM                             +++  L  IA
Sbjct: 78  TKKTMVLGGIVLMLGHFMLAMSIYP------------------------DLIFYGLGTIA 113

Query: 141 LGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISR 200
           +G+G  K++ S     +  E+ +  +      F+ F+  I++G+ ++  +   I +    
Sbjct: 114 VGSGLFKANPSSM-VGKLYERGDMPRRDGG--FTLFYMSINIGSFISPLLAGVIAENYGY 170

Query: 201 SVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQ----VIVAAIKKRKMDLPCN 256
            VG+ + +V M + ++ F AG    R   S   P+    +    +++A +    +   C 
Sbjct: 171 HVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCA 230

Query: 257 VGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARL 316
             M           HH    + L     +A   F       P     + +V   KM A  
Sbjct: 231 WLM-----------HHVVIANILLMTVTLAVIIFFFRLAFKP----RLDAVARNKMYA-Y 274

Query: 317 LPIWATTIIFWTTYAQMIT-FSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDR 375
           + ++   ++FW  YAQM T  +      M   +    +P       F S     + V   
Sbjct: 275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIW----FQSLNPFWVVVGSP 330

Query: 376 LIMPLWKKW--KGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPV 433
           ++  +W +   KGK   T L +  +G++                L+ A ++    A    
Sbjct: 331 VLAMIWTRLGRKGKDPTTPL-KFTLGMLFCGASF----------LTFAASIWFADAGGLT 379

Query: 434 SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFL 490
           S + ++  +     GE  I    L ++   +P+ +     G++    ++G  +  +L
Sbjct: 380 SPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYL 436

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 27/215 (12%)

Query: 23  IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRY 82
           +++ E  S  G+   L+ YL   +      +  + + +    ++  +LGGFLAD  LG  
Sbjct: 17  LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR 76

Query: 83  KTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALG 142
             + + A +  +G                       H    AS      LY++L +I  G
Sbjct: 77  MAVMLGALLMAIG-----------------------HVVLGASEIHPSFLYLSLAIIVCG 113

Query: 143 TGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSV 202
            G  KS+VS    + ++  D +        FS  +   ++G+++A     Y Q+E S ++
Sbjct: 114 YGLFKSNVSCLLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEEYSWAM 169

Query: 203 GYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVH 237
           G+G+ +V M   ++IFL G + + + +     ++ 
Sbjct: 170 GFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLR 204

Length = 493

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 27/197 (13%)

Query: 23  IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRY 82
           IEL ER    G+   +  YLV  + +  A S  + + F    + L  +GG+L D  LG  
Sbjct: 29  IELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK 88

Query: 83  KTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALG 142
           + I + A V  +G  ++A                        SG   G++Y+ +  IA+G
Sbjct: 89  RVIMLGAIVLAIGYALVA-----------------------WSGHDAGIVYMGMATIAVG 125

Query: 143 TGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSV 202
            G  K++ S   +  +++ D     ++   F+ ++  I++G+  ++    ++  +   SV
Sbjct: 126 NGLFKANPSSLLSTCYEKDD----PRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSV 181

Query: 203 GYGICSVAMFMAIIIFL 219
            + +  V M + ++ F 
Sbjct: 182 AFALSVVGMLITVVNFA 198

Length = 500

>gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 27/198 (13%)

Query: 23  IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRY 82
           +EL ER    G+   L  + V  +      +      F    + L  +GG++ D  LG  
Sbjct: 22  VELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK 81

Query: 83  KTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALG 142
           +TI + A V  +G  M  M                       S  +  +++IAL  IA+G
Sbjct: 82  RTIVLGAIVLAIGYFMTGM-----------------------SLLKPDLIFIALGTIAVG 118

Query: 143 TGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSV 202
            G  K++ +   +  +  KD +    +   F+ F+  I++G+L+++++   I D+   SV
Sbjct: 119 NGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSV 174

Query: 203 GYGICSVAMFMAIIIFLA 220
            Y +C   + +A++++ A
Sbjct: 175 TYNLCGAGLIIALLVYFA 192

Length = 489

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	565
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	99.94
PRK03545	390	putative arabinose transporter; Provisional	99.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.94
PRK12382	392	putative transporter; Provisional	99.94
TIGR00893	399	2A0114 d-galactonate transporter.	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.93
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
PRK10054	395	putative transporter; Provisional	99.93
PRK09705	393	cynX putative cyanate transporter; Provisional	99.93
PRK10504	471	putative transporter; Provisional	99.93
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.92
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.92
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.92
PRK09874	408	drug efflux system protein MdtG; Provisional	99.92
PRK11663	434	regulatory protein UhpC; Provisional	99.92
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.92
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.92
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.92
PRK10642	490	proline/glycine betaine transporter; Provisional	99.91
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.91
PRK12307	426	putative sialic acid transporter; Provisional	99.91
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.91
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.91
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.91
PRK10091	382	MFS transport protein AraJ; Provisional	99.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.91
KOG2532	466	consensus Permease of the major facilitator superf	99.91
TIGR00891	405	2A0112 putative sialic acid transporter.	99.91
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.9
TIGR00898	505	2A0119 cation transport protein.	99.9
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.9
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.9
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.9
PRK09952	438	shikimate transporter; Provisional	99.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.9
TIGR00895	398	2A0115 benzoate transport.	99.9
PRK03699	394	putative transporter; Provisional	99.9
PRK15011	393	sugar efflux transporter B; Provisional	99.89
PLN00028	476	nitrate transmembrane transporter; Provisional	99.89
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.89
PRK03893	496	putative sialic acid transporter; Provisional	99.89
PRK09528	420	lacY galactoside permease; Reviewed	99.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.89
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.89
PRK03633	381	putative MFS family transporter protein; Provision	99.89
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.89
PRK11043	401	putative transporter; Provisional	99.89
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.89
PRK15075	434	citrate-proton symporter; Provisional	99.88
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.88
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.88
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.88
KOG0569	485	consensus Permease of the major facilitator superf	99.87
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.87
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.87
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.87
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.87
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.86
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.86
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.86
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.86
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.86
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.86
PRK10133	438	L-fucose transporter; Provisional	99.86
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.85
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.85
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.84
KOG0254	513	consensus Predicted transporter (major facilitator	99.84
TIGR00901	356	2A0125 AmpG-related permease.	99.83
PRK11010	491	ampG muropeptide transporter; Validated	99.83
PRK11902	402	ampG muropeptide transporter; Reviewed	99.81
KOG2615	451	consensus Permease of the major facilitator superf	99.79
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.78
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.78
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.77
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.77
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.76
PRK10429	473	melibiose:sodium symporter; Provisional	99.75
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.75
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.75
PRK09669	444	putative symporter YagG; Provisional	99.74
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.73
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.73
PRK09848	448	glucuronide transporter; Provisional	99.73
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.73
TIGR00805	633	oat sodium-independent organic anion transporter.	99.72
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.7
PF13347	428	MFS_2: MFS/sugar transport protein	99.7
KOG2533	495	consensus Permease of the major facilitator superf	99.67
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.67
PTZ00207	591	hypothetical protein; Provisional	99.66
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.64
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.64
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.63
PRK11462	460	putative transporter; Provisional	99.63
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.56
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.56
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.55
COG2211	467	MelB Na+/melibiose symporter and related transport	99.49
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.35
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.35
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.33
PRK05122	399	major facilitator superfamily transporter; Provisi	99.32
PRK10642	490	proline/glycine betaine transporter; Provisional	99.32
PRK15011	393	sugar efflux transporter B; Provisional	99.31
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.3
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.29
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.29
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.28
PRK09874	408	drug efflux system protein MdtG; Provisional	99.27
KOG2563	480	consensus Permease of the major facilitator superf	99.26
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.24
PRK03545	390	putative arabinose transporter; Provisional	99.24
PRK03633	381	putative MFS family transporter protein; Provision	99.23
PRK09528	420	lacY galactoside permease; Reviewed	99.23
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.22
PRK03699	394	putative transporter; Provisional	99.22
PRK03893	496	putative sialic acid transporter; Provisional	99.22
PRK09705	393	cynX putative cyanate transporter; Provisional	99.2
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.2
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.2
PRK09952	438	shikimate transporter; Provisional	99.2
PRK12382	392	putative transporter; Provisional	99.19
PRK10489	417	enterobactin exporter EntS; Provisional	99.19
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.17
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.16
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.16
TIGR00893	399	2A0114 d-galactonate transporter.	99.14
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.12
PRK11663	434	regulatory protein UhpC; Provisional	99.12
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.11
PRK11010	491	ampG muropeptide transporter; Validated	99.11
TIGR00891	405	2A0112 putative sialic acid transporter.	99.11
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.11
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.1
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.1
KOG3626	735	consensus Organic anion transporter [Secondary met	99.1
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.09
PRK15075	434	citrate-proton symporter; Provisional	99.08
PRK10504	471	putative transporter; Provisional	99.06
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.06
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.05
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.01
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.01
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.01
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.01
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.99
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.98
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.98
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.98
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.98
PRK12307	426	putative sialic acid transporter; Provisional	98.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.96
PRK11902	402	ampG muropeptide transporter; Reviewed	98.96
KOG3762	618	consensus Predicted transporter [General function	98.94
PRK10091	382	MFS transport protein AraJ; Provisional	98.94
TIGR00900	365	2A0121 H+ Antiporter protein.	98.93
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.93
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.92
PRK10054	395	putative transporter; Provisional	98.91
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.89
PLN00028	476	nitrate transmembrane transporter; Provisional	98.89
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.87
PRK10133	438	L-fucose transporter; Provisional	98.85
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.83
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.83
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.81
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.81
TIGR00895	398	2A0115 benzoate transport.	98.81
PRK09848	448	glucuronide transporter; Provisional	98.8
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.8
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.79
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.78
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.77
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.74
PF13347	428	MFS_2: MFS/sugar transport protein	98.74
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.74
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.73
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.73
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.69
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.68
PRK11043	401	putative transporter; Provisional	98.63
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.62
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.61
TIGR00901	356	2A0125 AmpG-related permease.	98.6
TIGR00898	505	2A0119 cation transport protein.	98.58
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.57
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.57
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.56
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.56
PRK09669	444	putative symporter YagG; Provisional	98.5
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.47
KOG0569	485	consensus Permease of the major facilitator superf	98.43
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.41
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.38
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.38
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.36
COG0477	338	ProP Permeases of the major facilitator superfamil	98.34
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.33
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.33
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.31
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.3
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.29
PRK10429	473	melibiose:sodium symporter; Provisional	98.27
KOG2532	466	consensus Permease of the major facilitator superf	98.23
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.21
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.17
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.16
TIGR00805	633	oat sodium-independent organic anion transporter.	98.14
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.13
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.12
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.11
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.08
COG2211	467	MelB Na+/melibiose symporter and related transport	98.07
PRK11462	460	putative transporter; Provisional	98.05
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.02
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.99
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.97
KOG3762	618	consensus Predicted transporter [General function	97.97
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.93
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.85
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.79
PF12832	77	MFS_1_like: MFS_1 like family	97.78
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.74
KOG2533	495	consensus Permease of the major facilitator superf	97.72
PTZ00207	591	hypothetical protein; Provisional	97.66
KOG2615	451	consensus Permease of the major facilitator superf	97.63
KOG0637	498	consensus Sucrose transporter and related proteins	97.6
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.35
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.34
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.31
KOG0254	513	consensus Predicted transporter (major facilitator	97.3
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.15
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.09
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.86
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.76
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.71
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	96.54
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.91
KOG3626	735	consensus Organic anion transporter [Secondary met	95.79
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.79
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.75
PRK03612	521	spermidine synthase; Provisional	95.75
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.71
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.59
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.31
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	95.17
KOG2563	480	consensus Permease of the major facilitator superf	95.07
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.02
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.98
KOG0637	498	consensus Sucrose transporter and related proteins	92.96
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.4
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.22
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	91.65
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	91.05
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	90.58
KOG3810	433	consensus Micronutrient transporters (folate trans	90.47
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	88.44
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	86.26
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	85.66
KOG3880	409	consensus Predicted small molecule transporter inv	84.88
COG0477	338	ProP Permeases of the major facilitator superfamil	83.86
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	81.69

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-45  Score=400.87  Aligned_cols=537  Identities=49%  Similarity=0.784  Sum_probs=481.8

Q ss_pred             CcccccCCCCCCC---chh----------hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHH
Q 008450            7 DAVDYKGSPADPS---KTG----------IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGF   73 (565)
Q Consensus         7 ~~~~~~~~~~~~~---~~~----------~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~   73 (565)
                      +.+|+.+.+...+   ++.          .|.+||+++||+..|+..|++.++|.+..++...++.+...+...++++++
T Consensus        16 ~~~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~   95 (571)
T KOG1237|consen   16 TSVDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAF   95 (571)
T ss_pred             ceeeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4567777777775   444          899999999999999999999999999999999999999999999999999


Q ss_pred             HhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCC-CCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhh
Q 008450           74 LADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC-KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSG  152 (565)
Q Consensus        74 laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~  152 (565)
                      ++|.|+||.+++.++.++..+|..+...+..+|.+.+..| -.+++..|+.+...+...++.++.+.++|.|+..|+..+
T Consensus        96 laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~  175 (571)
T KOG1237|consen   96 LADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLA  175 (571)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchh
Confidence            9999999999999999999999999999999999998887 344455799999999999999999999999999999999


Q ss_pred             hhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCC
Q 008450          153 FGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSG  232 (565)
Q Consensus       153 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (565)
                      +.+|++++.++++++.+.+.++|++...++|..++..+..++++..||.+.|.++.+..++++++++...+.+++++|.+
T Consensus       176 fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~g  255 (571)
T KOG1237|consen  176 FGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRG  255 (571)
T ss_pred             hcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCC
Confidence            99999998887788888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhH
Q 008450          233 SPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKM  312 (565)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (565)
                      +|...+.+++..+.++++...+.+++............+++++.++++++++..+.+...+....+|+.|..+++++.|.
T Consensus       256 sp~t~i~~Vlvaa~~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~  335 (571)
T KOG1237|consen  256 SPKTRIGQVLVAAAFKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKA  335 (571)
T ss_pred             CchhHHHHHHHHHHHHHhccCCCcchhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhh
Confidence            99999999999999998887776644431111112334557788999999888766554455678899999999999999


Q ss_pred             HHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccc-cccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCC-CC
Q 008450          313 VARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGR-FQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GF  390 (565)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~-~~  390 (565)
                      .++.++++...++++..+.|..+.++.|...++...++ +.+|+..+..+..+..++..|++++++.|+.+|..+++ ..
T Consensus       336 ~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~  415 (571)
T KOG1237|consen  336 VLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGI  415 (571)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCC
Confidence            99999999999999999999999999999999999987 99999999999999999999999999999999998876 78


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhH
Q 008450          391 TNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKT  470 (565)
Q Consensus       391 ~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg  470 (565)
                      +.++++.+|+.+..+++...+..+..|.+....  ..+.+++++..|.++++++.|++|.+...+..++..+.+|++||+
T Consensus       416 t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~--~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS  493 (571)
T KOG1237|consen  416 TPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVS--LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKS  493 (571)
T ss_pred             ChhheeeccchHHHHHHHHHHHHHHHHhhhhhh--ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHH
Confidence            999999999999999999999999888776543  113346899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccc-cccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCc
Q 008450          471 MSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLA-DNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPK  547 (565)
Q Consensus       471 ~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~~~  547 (565)
                      .+++++.....+|+.++..+.+.+...+++  ..+|++ +++|.++...+||+++.+..++.+.++++.++++.++.+
T Consensus       494 ~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  494 VATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK  569 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence            999999999999999999999998766543  468999 999999999999999999999999999999888776643

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=5.1e-38  Score=326.64  Aligned_cols=461  Identities=21%  Similarity=0.307  Sum_probs=349.9

Q ss_pred             ccCCCCCCCchh-hHHHHHHHhHHHHHHHHHHhhhcCC----CCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHH
Q 008450           11 YKGSPADPSKTG-IELCERLSTMGIAVNLVTYLVGTMH----LPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTI   85 (565)
Q Consensus        11 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~yl~~~l~----~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~   85 (565)
                      .++||+...--+ +|+|||++|||+...+..|+...++    ++.+++.-+.+.|.....++++++||+|||++|+|+++
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI   95 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI   95 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            355666555444 9999999999999999999999888    99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHh
Q 008450           86 AIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKE  165 (565)
Q Consensus        86 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  165 (565)
                      ..+.+++++|.++++...                      ......++++.++.++|+|.++|+..++++|++|++|++ 
T Consensus        96 ~lGail~~iGh~~L~~~~----------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr-  152 (498)
T COG3104          96 VLGAILMAIGHLVLAISS----------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-  152 (498)
T ss_pred             HHHHHHHHHHHHHHhccc----------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc-
Confidence            999999999999998872                      013667999999999999999999999999999999976 


Q ss_pred             hhhhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccC--CCCCchH------H
Q 008450          166 KTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKK--SSGSPIV------H  237 (565)
Q Consensus       166 ~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~  237 (565)
                         |...++++|+..|+|++++|++.+++.+.+||...|.+.++-+..+++.++..+++...+.  ++..+..      .
T Consensus       153 ---rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~  229 (498)
T COG3104         153 ---RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPV  229 (498)
T ss_pred             ---cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhh
Confidence               8999999999999999999999999999999999999999999999999888876654433  2211211      1


Q ss_pred             HHHHHHHHHHhccccCCCCcCccccCCccccccCCCcchhHHhHHHHh-hcCCCCCCCCCCCCccccchhhHhHhHHHhH
Q 008450          238 IFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIV-AEGDFEAGSTPNPWKLCSVTSVEEVKMVARL  316 (565)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (565)
                      ...++....+.-          ++       .....+..+.......+ ......  .+...+   .+.. .+||+++..
T Consensus       230 ~~~~~~~~~~~~----------~~-------~~l~~~~~~~~~~~~~i~~~~~~~--~~~~~~---~~~~-~er~r~~~~  286 (498)
T COG3104         230 LGGLVVMILAAL----------LT-------LLLNQNTFSGVLLVISILIAIIYF--AEAFRS---PKVF-DERRRLLAA  286 (498)
T ss_pred             HHHHHHHHHHHH----------HH-------HHHHHHHHHHHHHHHHHHHHHHHH--HHHhcc---CccH-HHHHHHHHH
Confidence            111111111100          00       00000000000000000 000000  000011   1222 688999999


Q ss_pred             HHHHHHHHHHHhhhcccchhhhhhh-hcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhH
Q 008450          317 LPIWATTIIFWTTYAQMITFSVEQA-TTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQR  395 (565)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~  395 (565)
                      +++++...++|+.+.|..+.+..+. ...+.+..++.+++++++++|.+.+++++|+..++..|+.++.+   .++...+
T Consensus       287 ~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~---~ps~~~K  363 (498)
T COG3104         287 IPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNK---QPSTPIK  363 (498)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCC---CCCcchH
Confidence            9999999999999999998765554 33444445688999999999999999999999999999777642   5788889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHH
Q 008450          396 MAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL  475 (565)
Q Consensus       396 l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl  475 (565)
                      +.+|++++..+++.+........         +.+...|.+|+++.+++.++||.+..|...+++++.+|+.+++..+|+
T Consensus       364 FalGl~l~g~~fl~l~~~~~~~~---------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~  434 (498)
T COG3104         364 FALGLILAGLGFLILLLAGIWFG---------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAM  434 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc---------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHH
Confidence            99999999999998877632210         113368999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 008450          476 FLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYK  542 (565)
Q Consensus       476 ~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~  542 (565)
                      +.+.+..|..++..+.+.-.. +.         +.........+|+..+..+++.....+...++.+
T Consensus       435 wfLt~a~~~~l~g~va~~~~~-~~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~  491 (498)
T COG3104         435 WFLTVAAGQTLGGQVAGLTAV-TD---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLN  491 (498)
T ss_pred             HHHHHHHHHHhhceecccccc-cc---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999998888873211 00         0001122345688888888777777666666543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=2.4e-35  Score=320.41  Aligned_cols=464  Identities=19%  Similarity=0.274  Sum_probs=329.0

Q ss_pred             ccccCCCCCCCch-hhHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHH
Q 008450            9 VDYKGSPADPSKT-GIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAI   87 (565)
Q Consensus         9 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~   87 (565)
                      .+.++||...-.. ++|++||+++|++..++++|+++++|++..+.+++.+.|.....+..+++|+++||++||||++++
T Consensus         7 ~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~   86 (489)
T PRK10207          7 MGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVL   86 (489)
T ss_pred             cchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHH
Confidence            4455677665554 399999999999999999999999999999999999999999999999999999993399999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhh
Q 008450           88 FAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT  167 (565)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  167 (565)
                      +.+++.+++++++++.+                       ....++++|+++|+|.|...|+..++++|++|+++++   
T Consensus        87 g~~~~~~g~~~~~~~~~-----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~---  140 (489)
T PRK10207         87 GAIVLAIGYFMTGMSLL-----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR---  140 (489)
T ss_pred             HHHHHHHHHHHHHHhcc-----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh---
Confidence            99999999999988732                       1234668999999999999999999999999987632   


Q ss_pred             hhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhcccccccc--CCCCCchHHHHHHH---
Q 008450          168 QMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYK--KSSGSPIVHIFQVI---  242 (565)
Q Consensus       168 ~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---  242 (565)
                       |+++++++++..|+|.++||.+++++.++.|||+.|++.++..+++++.+...+++.+++  +|++++.+.....+   
T Consensus       141 -~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~  219 (489)
T PRK10207        141 -LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLL  219 (489)
T ss_pred             -hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHH
Confidence             688999999999999999999999999999999999998766666665555555444332  22222221111000   


Q ss_pred             ----HHHHHhccccCCCCcCccccCCccccccCCCcchhH-HhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHH
Q 008450          243 ----VAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHF-LDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLL  317 (565)
Q Consensus       243 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (565)
                          .........                   +....... ......+....+...+.       +.++ .++++.+..+
T Consensus       220 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~i~~~~f~~~~~-------~~~~-~~r~r~~~~~  272 (489)
T PRK10207        220 GSVVMIFVCAWLM-------------------HNVEVANLVLIVLSIVVTIIFFREAF-------KLDK-TGRNKMFVAF  272 (489)
T ss_pred             HHHHHHHHHHHHH-------------------hhhhHHHHHHHHHHHHHHHHHHHHHh-------cCCH-HHHHHHHHHH
Confidence                000000000                   00000000 00000000000000000       1112 2344555556


Q ss_pred             HHHHHHHHHHhhhcccchhhhhhhh-cccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHH
Q 008450          318 PIWATTIIFWTTYAQMITFSVEQAT-TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRM  396 (565)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l  396 (565)
                      .++....++|+.+.|..+.+..+.. ..+....++.+++.+++.+|.+..++..|+.+++.+++.+|..   .++...++
T Consensus       273 ~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~---~~~~~~k~  349 (489)
T PRK10207        273 VLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGK---DLSMPMKF  349 (489)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCC---CCCcHHHH
Confidence            6677788889999988665443332 3455555778888899999999999999999998777766633   46788889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHH
Q 008450          397 AIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLF  476 (565)
Q Consensus       397 ~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~  476 (565)
                      .+|+++.+++++.+.......   .      +.+...+.+|+++.+++.++||.+..|..++++.+.+|++++|.++|++
T Consensus       350 ~~G~~l~~~~~~~~~~~~~~~---~------~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~  420 (489)
T PRK10207        350 TLGMFLCSLGFLTAAAAGMWF---A------DAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMW  420 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh---c------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHH
Confidence            999999999987664332100   0      0011456788899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 008450          477 LTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPK  544 (565)
Q Consensus       477 ~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~  544 (565)
                      ++..++|+.+|..++..... .. ...++.    ...+.+.++|...++.+++..+++++..++.++.
T Consensus       421 ~l~~~ig~~lg~~l~~~~~~-~~-~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        421 FLTQAAAFLLGGYVATFTAV-PD-NITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhcc-cc-ccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998875531 00 000010    0112356788888888888888887777665433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=5.7e-34  Score=309.21  Aligned_cols=451  Identities=19%  Similarity=0.269  Sum_probs=324.8

Q ss_pred             ccCCCCCCCch-hhHHHHHHHhHHHHHHHHHHhhhc--CCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHH
Q 008450           11 YKGSPADPSKT-GIELCERLSTMGIAVNLVTYLVGT--MHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAI   87 (565)
Q Consensus        11 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~   87 (565)
                      ++++|.....- ..|++||+++|++.++++.|++++  +|++..+++++.+.+.++..++++++|+++||++|||+++.+
T Consensus         5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~   84 (475)
T TIGR00924         5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL   84 (475)
T ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence            34555544332 289999999999999999999987  999999999999999999999999999999993399999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhh
Q 008450           88 FAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT  167 (565)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  167 (565)
                      +.++.+++.++++++++                        .+.++++|++.|+|.|+..|+..++++|++|++++   .
T Consensus        85 ~~~~~~~g~~~~~~~~~------------------------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~  137 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSIY------------------------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---P  137 (475)
T ss_pred             HHHHHHHHHHHHHhccc------------------------HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---c
Confidence            99999999998887622                        56788899999999999999999999999987652   1


Q ss_pred             hhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchH----HHHHH--
Q 008450          168 QMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIV----HIFQV--  241 (565)
Q Consensus       168 ~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--  241 (565)
                      +|+++++++++..|+|.++||.+++++.+.+||++.|.+.++..+++++.+...++.+++.++++++.+    +..+.  
T Consensus       138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (475)
T TIGR00924       138 RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLL  217 (475)
T ss_pred             cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHH
Confidence            288899999999999999999999999999999999999887766666665555544433222221111    00000  


Q ss_pred             -----HHHHHHhccccCCCCcCccccCCccccccCCCcchhH-HhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHh
Q 008450          242 -----IVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHF-LDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVAR  315 (565)
Q Consensus       242 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (565)
                           +....+......+..               ..+.... ...+..+... .   ....+    +.+. .++++...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~-~---~~~~~----~~~~-~~~~~~~~  273 (475)
T TIGR00924       218 ALLAALALVFFCAWLMHHVV---------------IANILLMTVTLAVIIFFF-R---LAFKP----RLDA-VARNKMYA  273 (475)
T ss_pred             HHHHHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHH-H---HHHhc----cCCH-HHHhHHHH
Confidence                 000000000000000               0000000 0000000000 0   00000    1111 22344445


Q ss_pred             HHHHHHHHHHHHhhhcccchhh-hhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchh
Q 008450          316 LLPIWATTIIFWTTYAQMITFS-VEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQ  394 (565)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~  394 (565)
                      .+++++...++|+.+.|..+.+ ..+...++...+++.+++++++++|.+..++..|+.+++..++.+|..   .++...
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~---~~~~~~  350 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK---DPTTPL  350 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC---CCCcHH
Confidence            6778888899999999988754 344455677777888999999999999999999999887666555421   346666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHH
Q 008450          395 RMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTG  474 (565)
Q Consensus       395 ~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g  474 (565)
                      ++.+|+++.+++++.+++....    .      +.+...+++|+++++++.++||.+..|..++++.+.+|+++||+++|
T Consensus       351 k~~~G~~l~~~~~~~~~~~~~~----~------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g  420 (475)
T TIGR00924       351 KFTLGMLFCGASFLTFAASIWF----A------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLG  420 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh----c------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHH
Confidence            7899999999999888765211    0      11125789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 008450          475 LFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWY  541 (565)
Q Consensus       475 l~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~  541 (565)
                      ++.....+|..+++.+.......      .+          ....|...++++++..++++...+..
T Consensus       421 ~~~l~~~~g~~l~~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (475)
T TIGR00924       421 MWFLAQAMGSLLGGYLATFGAVP------QG----------VTGVFGKIGLVTLLVGVVMALMVPWL  471 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc------cc----------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888754210      11          24567777777777777776666554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=7.4e-33  Score=297.66  Aligned_cols=450  Identities=18%  Similarity=0.249  Sum_probs=317.0

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      .|++||+++|++...++.|+++.+|++..+.+.+.+.+.....++++++|+++||++||||++.++.++.+++.++++..
T Consensus        17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~   96 (493)
T PRK15462         17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS   96 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999998899999999999999998777643


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      ..                       ....++++..+.++|.|...++.+++++|++|+++++    |.++++++++..|+
T Consensus        97 ~~-----------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nl  149 (493)
T PRK15462         97 EI-----------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNV  149 (493)
T ss_pred             hc-----------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHH
Confidence            11                       1233555666677888999999999999999987533    89999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhcccccccc---CCCCCchHHHHH-----HHHH-----HHHhc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYK---KSSGSPIVHIFQ-----VIVA-----AIKKR  249 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~-----~~~~~  249 (565)
                      |+.++|.+.+++.+.+||++.|.+.++..+++++.++..+++..+.   +|+..+.++...     +...     .+...
T Consensus       150 G~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (493)
T PRK15462        150 GSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITV  229 (493)
T ss_pred             HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998877777766666555443321   111111011000     0000     00000


Q ss_pred             cccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhh
Q 008450          250 KMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTT  329 (565)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (565)
                      ..                   ........+-...........   +   ....+ ...++||++..++.++....+||+.
T Consensus       230 ~~-------------------~~~~~~~~~~~~~~~~~~~~~---~---~~~~~-~~~~er~r~~~~~~l~~~~~~Fw~~  283 (493)
T PRK15462        230 LF-------------------WKEWSVYALIVATIIGLGVLA---K---IYRKA-ENQKQRKELGLIVTLTFFSMLFWAF  283 (493)
T ss_pred             HH-------------------HHHHHHHHHHHHHHHHHHHHH---H---HHHhc-CCHHHHhhHHHHHHHHHHHHHHHHH
Confidence            00                   000000000000000000000   0   00001 1235678888889999999999999


Q ss_pred             hcccchhhh-hhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHH
Q 008450          330 YAQMITFSV-EQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMA  408 (565)
Q Consensus       330 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~  408 (565)
                      +.|.++.+. ....+.+.++.++.+|+++++++|.+.+++.+|+..++..++.+|.+   .++...++.+|+++.+++++
T Consensus       284 ~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~---~~s~~~Kfa~g~~~~g~~f~  360 (493)
T PRK15462        284 AQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNR---TVRIWGKFALGLGLMSAGFC  360 (493)
T ss_pred             HHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCC---CCCcHHHHHHHHHHHHHHHH
Confidence            999987553 33466788888999999999999999999999999998666544311   46788889999999999999


Q ss_pred             HHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHH-HHHHHHh
Q 008450          409 AAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTL-SLGFFVS  487 (565)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~-~lg~~ig  487 (565)
                      ++.+.....    +.++      ..+++|++..+++.++||.+..|...+++++.+|++.||+.+|++.... .+|..++
T Consensus       361 ~l~~~~~~~----~~~~------~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~  430 (493)
T PRK15462        361 ILTLSARWS----AMYG------HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLA  430 (493)
T ss_pred             HHHHHHhhc----CCCC------CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887654321    1111      4788999999999999999999999999999999999999999997744 6777777


Q ss_pred             hHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHH--HHHHhhhhhhcC
Q 008450          488 SFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIIN--LVIYLICAVWYK  542 (565)
Q Consensus       488 ~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~--~~~~~~~~~~~~  542 (565)
                      +.+.+.......+    +-...+-....+...|...+..+++.  ++++.+.++..|
T Consensus       431 g~~~~~~~~~~~~----~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  483 (493)
T PRK15462        431 GVIADQTSQASFD----ASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALK  483 (493)
T ss_pred             HHHHHHhccccCC----ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766654211000    00000001123556677766666554  444444554443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=1.8e-32  Score=299.21  Aligned_cols=457  Identities=19%  Similarity=0.264  Sum_probs=320.2

Q ss_pred             cccCCCC-CCCchhhHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHH
Q 008450           10 DYKGSPA-DPSKTGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIF   88 (565)
Q Consensus        10 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~   88 (565)
                      +.+++|. ...-...|+|||+++|++..+++.|+++++|++..+.+++.+.+........+++|+++||++|||+++.++
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g   94 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLG   94 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            3345554 333334999999999999999999999999999999999999988888888889999999933999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhh
Q 008450           89 AAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ  168 (565)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  168 (565)
                      .++..++..+++++.+                       ....++++|+++|+|.|...|+..++++|++|+++++    
T Consensus        95 ~~~~~ig~~l~~~~~~-----------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----  147 (500)
T PRK09584         95 AIVLAIGYALVAWSGH-----------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----  147 (500)
T ss_pred             HHHHHHHHHHHHHhcc-----------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----
Confidence            9999999888887621                       2456778999999999999999999999999876532    


Q ss_pred             hcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhcccccccc--CCCCCchHH--HHH----
Q 008450          169 MAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYK--KSSGSPIVH--IFQ----  240 (565)
Q Consensus       169 r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~----  240 (565)
                      |+.+++++++..|+|.++||+++|++.+++|||+.|.+.++..+++++.+....+..+++  +|++++.+.  ...    
T Consensus       148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (500)
T PRK09584        148 LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVG  227 (500)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHH
Confidence            667899999999999999999999999999999999998876666555544443333222  222222111  100    


Q ss_pred             H-HHHHHHhccccCCCCcCccccCCccccccCCCcchh-HHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHH
Q 008450          241 V-IVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFH-FLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLP  318 (565)
Q Consensus       241 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (565)
                      . ...........                   ..+... ..............    ..   ..+.+ ..++++....+.
T Consensus       228 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~-~~~~~~~~~~~~  280 (500)
T PRK09584        228 VVALIAIATWLLH-------------------NQEIARMALGVVALGIVVIFG----KE---AFAMK-GAARRKMIVAFI  280 (500)
T ss_pred             HHHHHHHHHHHHh-------------------cchHHHHHHHHHHHHHHHHHH----HH---HhhcC-HHHHHHHHHHHH
Confidence            0 00001000000                   000000 00000000000000    00   00111 234555556677


Q ss_pred             HHHHHHHHHhhhcccchhhhhhhh-cccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHH
Q 008450          319 IWATTIIFWTTYAQMITFSVEQAT-TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMA  397 (565)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~  397 (565)
                      +++...++|+.+.|.++.+..+.. ..+..+.++.+++++++++|.+..++..|+.+++..++.+|      .+..+++.
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r------~~~~~~~~  354 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR------LPMPHKFA  354 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC------CCcHHHHH
Confidence            778889999999999887765543 34555667788899999999999999999998875444333      45678899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHH
Q 008450          398 IGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFL  477 (565)
Q Consensus       398 ~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~  477 (565)
                      +|+++++++++.+.......          +.....+.+|+++.+++.++||.+..|...+++.+.+|+++||+++|++.
T Consensus       355 ~G~~l~~l~f~~l~~~~~~~----------~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~  424 (500)
T PRK09584        355 IGMVLCSGAFLVLPLGAKFA----------NDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWF  424 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhc----------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            99999999999887653210          01124677799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHhhhhhhcccCCCCCCcccccc-ccchhhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 008450          478 TTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNI-NRGRLDLFYGLLAILSIINLVIYLICAVWYKP  543 (565)
Q Consensus       478 ~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~-~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~  543 (565)
                      +...+|+.+++.+.+.... ..      -..+.. ..+.+...|..+++++++..++.+...++.++
T Consensus       425 l~~a~g~~~~g~~~~~~~~-~~------~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k  484 (500)
T PRK09584        425 LTTAGAALIAGYVANLMAV-PD------NVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR  484 (500)
T ss_pred             HHHHHHHHHHHHHHHHhcc-cc------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888764321 00      000000 11235677888888887777776666665443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.94  E-value=3.3e-24  Score=227.42  Aligned_cols=368  Identities=13%  Similarity=0.072  Sum_probs=243.8

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..+...++.....+.++.|+.+++|.|..+.+++.+++.++..++.++.|+++||+ ||||++.++.++..++.+.++++
T Consensus        23 ~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~  101 (399)
T PRK05122         23 FTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCALSGLLYLLA  101 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHHHHHHHHHh
Confidence            45555566666777888899999999999999999999999999999999999999 99999999999988887776654


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      ...++                ....+...+++.|+++|+|.+...+....++.|+.|+++      |++++++.....++
T Consensus       102 ~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~  159 (399)
T PRK05122        102 GLLAA----------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYG  159 (399)
T ss_pred             hhhhc----------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhH
Confidence            21111                011246789999999999999999999999999999988      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYE  262 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (565)
                      |.++|+.+++++.+..||++.+++..+..++.++.. ...+   ++++++++..+                         
T Consensus       160 g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~-------------------------  210 (399)
T PRK05122        160 ALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRP---AVPPVKGERLP-------------------------  210 (399)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCC---CCCCCCccchh-------------------------
Confidence            999999999999999999998887665544332221 1111   11110000000                         


Q ss_pred             CCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhh
Q 008450          263 DTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQAT  342 (565)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (565)
                                     +.+                         ..++.+...  .........+..... ....+..+ .
T Consensus       211 ---------------~~~-------------------------~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~-~  246 (399)
T PRK05122        211 ---------------FRR-------------------------VLGRVWPYG--MGLALASIGFGTIAT-FITLYYAA-R  246 (399)
T ss_pred             ---------------HHH-------------------------HHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHH-c
Confidence                           000                         000000000  001111111111111 11111111 1


Q ss_pred             cccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008450          343 TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVAR  422 (565)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~  422 (565)
                      +.+        ..........+..++...+.+++.|+..+|          +.+..+.++..+++..+...         
T Consensus       247 ~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~----------~~~~~~~~~~~~~~~~~~~~---------  299 (399)
T PRK05122        247 GWD--------GAALALTLFGVAFVGARLLFGNLINRLGGL----------RVAIVSLLVEILGLLLLWLA---------  299 (399)
T ss_pred             ccc--------cchHHHHHHHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHHHHHHh---------
Confidence            110        112222333444455556666665554332          23556666666666555432         


Q ss_pred             hcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCC
Q 008450          423 AVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKG  502 (565)
Q Consensus       423 ~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~  502 (565)
                                .+.+..++..++.+++.+..++.......+..|++.||+++|+++....+|..+++.+.+.+.+..    
T Consensus       300 ----------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----  365 (399)
T PRK05122        300 ----------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF----  365 (399)
T ss_pred             ----------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence                      234455667788999998888888888889999999999999999999999999999888775321    


Q ss_pred             CCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008450          503 GGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAV  539 (565)
Q Consensus       503 ~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~  539 (565)
                                  ++...|++.+++.+++.++.+...+
T Consensus       366 ------------g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        366 ------------GYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             ------------CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                        1456777888877777766555433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=2.2e-24  Score=228.30  Aligned_cols=351  Identities=15%  Similarity=0.086  Sum_probs=237.2

Q ss_pred             HHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 008450           38 LVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETA  117 (565)
Q Consensus        38 l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  117 (565)
                      +.+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..+++++++++++             
T Consensus        31 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~-------------   96 (390)
T PRK03545         31 LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIASHVLSALAWN-------------   96 (390)
T ss_pred             chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence            34667889999999999999999999999999999999999 9999999999999999999988733             


Q ss_pred             cccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccc
Q 008450          118 THTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE  197 (565)
Q Consensus       118 ~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~  197 (565)
                                 ++.++++|+++|++.+...+...+++.|++|+++      |++++++.....++|.++||.+++.+.+.
T Consensus        97 -----------~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~  159 (390)
T PRK03545         97 -----------FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQY  159 (390)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                       7889999999999999999999999999999888      99999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcchh
Q 008450          198 ISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFH  277 (565)
Q Consensus       198 ~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (565)
                      +|||+.|++.+++.++..+..+...|+.++++  +++.++    ...                                 
T Consensus       160 ~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~----~~~---------------------------------  200 (390)
T PRK03545        160 LGWRTTFLAIGGGALITLLLLIKLLPLLPSEH--SGSLKS----LPL---------------------------------  200 (390)
T ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cchHHH----HHH---------------------------------
Confidence            99999999988776655444443322211100  000000    000                                 


Q ss_pred             HHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccccCcch
Q 008450          278 FLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGS  357 (565)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (565)
                                                  ..++++........+......+......+ .+.....+.+.      ...+.
T Consensus       201 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~g~s~------~~~~~  245 (390)
T PRK03545        201 ----------------------------LFRRPALVSLYLLTVVVVTAHFTAYSYIE-PFVQQVAGLSE------NFATL  245 (390)
T ss_pred             ----------------------------HHhCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCc------cHHHH
Confidence                                        00111111111111111111122111111 11111111111      11233


Q ss_pred             hhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehh
Q 008450          358 LTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFL  437 (565)
Q Consensus       358 ~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  437 (565)
                      ......+..++...+.+++.||..+|           .+..+..+..++...+...                  ..+.+.
T Consensus       246 ~~~~~~~~~~~g~~~~g~l~dr~~~~-----------~~~~~~~~~~~~~~~l~~~------------------~~~~~~  296 (390)
T PRK03545        246 LLLLFGGAGIIGSVLFSRLGNRHPSG-----------FLLIAIALLLVCLLLLLPA------------------ANSEWH  296 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchh-----------HHHHHHHHHHHHHHHHHHH------------------hchHHH
Confidence            33444455566666666665543322           2444444444444333221                  223445


Q ss_pred             hHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhh
Q 008450          438 LIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLD  517 (565)
Q Consensus       438 li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~  517 (565)
                      +++..++.|++.....+.....+.+..| +.|++++|+++....+|..+|+.+.+.+.+..                ++.
T Consensus       297 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~----------------g~~  359 (390)
T PRK03545        297 LSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL----------------GLS  359 (390)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------Chh
Confidence            5667788888887777777888888877 57899999999999999999999999886422                135


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhh
Q 008450          518 LFYGLLAILSIINLVIYLICAV  539 (565)
Q Consensus       518 ~~f~~~a~l~lv~~~~~~~~~~  539 (565)
                      ..|++.+++.+++++.++...+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        360 SIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc
Confidence            6678888888888877666653

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=3.9e-24  Score=220.86  Aligned_cols=356  Identities=14%  Similarity=0.141  Sum_probs=253.8

Q ss_pred             HHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008450           37 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  116 (565)
Q Consensus        37 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (565)
                      -+.+-+.+++|.|..++|++++.|.++..++.|+...+.||+ .||++++..+.+++++.++++++   |+         
T Consensus        34 gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~lFi~~n~l~alA---p~---------  100 (394)
T COG2814          34 GLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLALFIVSNLLSALA---PS---------  100 (394)
T ss_pred             hchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHHHHHh---cc---------
Confidence            344567899999999999999999999999999999999999 99999999999999999999999   33         


Q ss_pred             CcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcc
Q 008450          117 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  196 (565)
Q Consensus       117 ~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~  196 (565)
                                  ++.++++|++.|+..|.+.+...++.++..|+++      |+++.++...+..++.++|.++|.++.+
T Consensus       101 ------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~  162 (394)
T COG2814         101 ------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQ  162 (394)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence                        8999999999999999999999999999999999      9999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHhccc-cccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcc
Q 008450          197 EISRSVGYGICSVAMFMAIIIFLAGTK-RYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQ  275 (565)
Q Consensus       197 ~~gw~~~f~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (565)
                      .+|||..|++.+++.+++++..+...| +...+++ +.+..+..+.                                  
T Consensus       163 ~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~-~~~~~~~~~~----------------------------------  207 (394)
T COG2814         163 LFGWRATFLAIAVLALLALLLLWKLLPPSEISGSL-PGPLRTLLRL----------------------------------  207 (394)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCC-CcchhHHHHH----------------------------------
Confidence            999999999999888888777777666 1111111 0111110000                                  


Q ss_pred             hhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccccCc
Q 008450          276 FHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPA  355 (565)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (565)
                                                     .++.+....+....+....+++.|.+..+ +..+...++.      ...
T Consensus       208 -------------------------------l~~p~v~~~l~~t~l~~~g~F~~ftYi~P-~L~~v~g~s~------~~v  249 (394)
T COG2814         208 -------------------------------LRRPGVLLGLLATFLFMTGHFALYTYIRP-FLESVAGFSV------SAV  249 (394)
T ss_pred             -------------------------------hcCchHHHHHHHHHHHHcchhhhHHhHHH-HHHHccCCCH------hHH
Confidence                                           01112222222222333333333332222 2222222221      123


Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceee
Q 008450          356 GSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSV  435 (565)
Q Consensus       356 ~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  435 (565)
                      ++......+...+...+.+++.|+ ..          .+.+.....+..+.++.+.+.                  ..+.
T Consensus       250 s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~----------~~~l~~~~~l~a~~~l~l~~~------------------~~~~  300 (394)
T COG2814         250 SLVLLAFGIAGFIGNLLGGRLADR-GP----------RRALIAALLLLALALLALTFT------------------GASP  300 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccc-cc----------hhHHHHHHHHHHHHHHHHHHh------------------cchH
Confidence            445555666667777777777555 21          233555656666666665554                  3344


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccch
Q 008450          436 FLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGR  515 (565)
Q Consensus       436 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~  515 (565)
                      +..+...++.+++........+.-..+..| +.+..+++++....++|..+|..+++.+.+.                .+
T Consensus       301 ~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~----------------~g  363 (394)
T COG2814         301 ALALALLFLWGFAFSPALQGLQTRLARLAP-DAADLAGSLNVAAFNLGIALGAALGGLVLDA----------------LG  363 (394)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHhcccCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hc
Confidence            455555666666655555555555555444 5599999999999999999999999998642                12


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 008450          516 LDLFYGLLAILSIINLVIYLICAVWYK  542 (565)
Q Consensus       516 ~~~~f~~~a~l~lv~~~~~~~~~~~~~  542 (565)
                      +....++.+++.++++++.+...+..+
T Consensus       364 ~~~~~~~~a~l~~~a~~~~~~~~~~~~  390 (394)
T COG2814         364 YAATGWVGAALLLLALLLALLSARKDR  390 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            466788888888888888777665543

>PRK12382 putative transporter; Provisional

Probab=99.94  E-value=1.1e-23  Score=222.88  Aligned_cols=366  Identities=11%  Similarity=0.096  Sum_probs=238.2

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++..++.....+.++.|+.+++|.|..+.+++.+.+.++..+++++.|+++||+ ||||++.++.+...++.+.....
T Consensus        23 ~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~  101 (392)
T PRK12382         23 AVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLAGLAYLLA  101 (392)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHHHHHHHhh
Confidence            44444445455556677788999999999999999999999999999999999999 99999999988777765544332


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      ...+.                ....+++.++++|+++|+|.+...+...+++.|.+|+++      |++++++.....++
T Consensus       102 ~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~  159 (392)
T PRK12382        102 AILPV----------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYG  159 (392)
T ss_pred             hcccc----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHH
Confidence            11111                011357889999999999999999999999999999888      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYE  262 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (565)
                      |.++||.+++++.+.+||++.+.+..+..++.+..   . ++.++++++++...+                         
T Consensus       160 g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~-------------------------  210 (392)
T PRK12382        160 ALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF---N-GTVRKVPAHAGERPS-------------------------  210 (392)
T ss_pred             HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH---H-HhccCCCCCcccCch-------------------------
Confidence            99999999999999899998777654443322221   1 111111110000000                         


Q ss_pred             CCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhh
Q 008450          263 DTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQAT  342 (565)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (565)
                                     ..+.                      .+.... ..+.    .......+... ......+..+. 
T Consensus       211 ---------------~~~~----------------------~~~~~~-~~~~----~~l~~~~~~~~-~~~~~~~~~~~-  246 (392)
T PRK12382        211 ---------------LWSV----------------------VGLIWK-PGLG----LALQGVGFAVI-GTFVSLYFASK-  246 (392)
T ss_pred             ---------------HHHH----------------------HHHHHH-hHHH----HHHHHHHHhHH-HHHHHHHHHhc-
Confidence                           0000                      000000 0000    00111111111 11111111110 


Q ss_pred             cccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008450          343 TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVAR  422 (565)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~  422 (565)
                      ..       . ..........+..++..++.+++.|++.+|          +.+..+..+..+++....+.         
T Consensus       247 ~~-------~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~----------~~~~~~~~~~~~~~~~~~~~---------  299 (392)
T PRK12382        247 GW-------A-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV----------KVAIVSLLVETVGLLLLWLA---------  299 (392)
T ss_pred             CC-------c-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------eehHHHHHHHHHHHHHHHHc---------
Confidence            00       0 112222333444555667777776655543          22455666666666554432         


Q ss_pred             hcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCC
Q 008450          423 AVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKG  502 (565)
Q Consensus       423 ~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~  502 (565)
                                .+.+...+..++.+++.+...+.......+..|++.||++.|++++...+|..+++.+.+.+.+..    
T Consensus       300 ----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~----  365 (392)
T PRK12382        300 ----------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF----  365 (392)
T ss_pred             ----------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence                      233445567788888888888888888889999999999999999999999999999999876421    


Q ss_pred             CCCccccccccchhhHHHHHHHHHHHHHHHHHhhh
Q 008450          503 GGGWLADNINRGRLDLFYGLLAILSIINLVIYLIC  537 (565)
Q Consensus       503 ~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~  537 (565)
                        +          +...|.+.+++.+++.++.+..
T Consensus       366 --g----------~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        366 --G----------YPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             --C----------chHHHHHHHHHHHHHHHHHHhh
Confidence              2          3567788888888877766544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.93  E-value=7.4e-24  Score=221.73  Aligned_cols=384  Identities=16%  Similarity=0.118  Sum_probs=237.6

Q ss_pred             HHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           33 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      ...+...+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++..+++++.         
T Consensus        11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~---------   80 (399)
T TIGR00893        11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG---------   80 (399)
T ss_pred             HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc---------
Confidence            3445566778899999999999999999999999999999999999 999999999999999999988873         


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                                     +++.++++|++.|++.+...+....++.|++|+++      |++++++.....++|.++++.+++
T Consensus        81 ---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~  139 (399)
T TIGR00893        81 ---------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVG  139 (399)
T ss_pred             ---------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHH
Confidence                           27889999999999999999999999999999988      999999999999999999999999


Q ss_pred             HhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCC
Q 008450          193 YIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHH  272 (565)
Q Consensus       193 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (565)
                      ++.+..+||+.|++.++..++..+..+...++.+++ ++..+.++         ++...  +.....        .....
T Consensus       140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~--~~~~~~--------~~~~~  199 (399)
T TIGR00893       140 WILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQK-AKWLTEEE---------KYIVV--GGLLAE--------QQGKG  199 (399)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCc-cccCCHHH---------Hhhcc--hhhccc--------ccccc
Confidence            999999999999988777665554444433322111 11111000         00000  000000        00000


Q ss_pred             CcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccc
Q 008450          273 TEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQ  352 (565)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (565)
                                           +....+.. ..+..++++........+...... ..+....+.+..+....+      .
T Consensus       200 ---------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~  250 (399)
T TIGR00893       200 ---------------------PSTPKKYQ-IKELLKDRRVWGLALGQFLVNIGL-GFFLTWFPTYLVQERGLS------I  250 (399)
T ss_pred             ---------------------ccCCCccc-hHHHhcCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhccc------H
Confidence                                 00000000 001111222221111111111111 111111112222211111      1


Q ss_pred             cCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhcCCCCC
Q 008450          353 IPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVG---MAAAALVERKRLSVARAVGLTTA  429 (565)
Q Consensus       353 ~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~  429 (565)
                      ...+.......+..++..++.+++.|++.+|...         +........++   .........              
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--------------  307 (399)
T TIGR00893       251 LEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS---------LVFARKTAIIAGLVLSLLMFATN--------------  307 (399)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------hhHHHHHHHHHHHHHHHHHHHhc--------------
Confidence            1234455555666677778888887777766211         11111111111   111111100              


Q ss_pred             CcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCcccc
Q 008450          430 TLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLAD  509 (565)
Q Consensus       430 ~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~  509 (565)
                        ..+..+......+.+.+.....+..+.+..|.+|++.||+++|+.+.+..+|..+++.+.+.+.+..           
T Consensus       308 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~-----------  374 (399)
T TIGR00893       308 --YVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT-----------  374 (399)
T ss_pred             --cchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC-----------
Confidence              0112222333333333333367899999999999999999999999999999999999999875321           


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHhh
Q 008450          510 NINRGRLDLFYGLLAILSIINLVIYLI  536 (565)
Q Consensus       510 ~~~~~~~~~~f~~~a~l~lv~~~~~~~  536 (565)
                          +.+...|++.+++.+++.+..+.
T Consensus       375 ----g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       375 ----GSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             ----CchhHHHHHHHHHHHHHHHHHHH
Confidence                11356677777777777666543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=5.6e-24  Score=226.24  Aligned_cols=368  Identities=14%  Similarity=0.129  Sum_probs=243.4

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++..++++.+.+.++.|+++++|++..+.|.+.+.+.+...+..+++|+++||+ |||+++.++.++..++.+++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~~~~~~   96 (400)
T PRK11646         18 DNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFATMAIA   96 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHHHHHHh
Confidence            67788889999999999999999999999999999999999999999999999999 99999999999999999988776


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      +                        +++.++++|+++|++.+...|...+++.|.+|+++      |++++++.+...++
T Consensus        97 ~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~  146 (400)
T PRK11646         97 H------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSA  146 (400)
T ss_pred             c------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence            2                        27778999999999999999999999999999888      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYE  262 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (565)
                      |..+||.+++++. .++|++.|++.++..++..++.....++.+. ++..++..+                         
T Consensus       147 g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~-------------------------  199 (400)
T PRK11646        147 GAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVRE-------------------------  199 (400)
T ss_pred             HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhHH-------------------------
Confidence            9999999999998 6899999998877665544333332222100 000000000                         


Q ss_pred             CCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhh
Q 008450          263 DTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQAT  342 (565)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (565)
                                    ++                         ....++++.................... ..+.+..+..
T Consensus       200 --------------~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~  239 (400)
T PRK11646        200 --------------GM-------------------------TRVLRDKRFVTYVLTLTGYYMLAVQVML-MLPIMVNDIA  239 (400)
T ss_pred             --------------HH-------------------------HHHHcCchHHHHHHHHHHHHHHHHHHHH-hhhhhHHhhc
Confidence                          00                         0001111211111111111111111111 1111211111


Q ss_pred             cccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008450          343 TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVAR  422 (565)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~  422 (565)
                      + .      ....+.+..+..+.........+++.+    |     +.+..+.+..+.++..+++..++..         
T Consensus       240 ~-~------~~~~g~l~~~~~~~~~~~~~~~~~~~~----~-----r~~~~~~~~~~~~~~~~~~~~l~~~---------  294 (400)
T PRK11646        240 G-S------PSAVKWMYAIEACLSLTLLYPIARWSE----K-----RFRLEHRLMAGLLIMSLSMFPIGMV---------  294 (400)
T ss_pred             C-C------chHHHHHHHHHHHHHHHHHHHHHHHHH----H-----hcchhHHHHHHHHHHHHHHHHHHHh---------
Confidence            1 0      111222333333333322222233322    2     1122234566766677666655442         


Q ss_pred             hcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCC
Q 008450          423 AVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKG  502 (565)
Q Consensus       423 ~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~  502 (565)
                                .+.+++++..++.+++.....|...+++.+.+|++.||+++|++++...+|..+|+.+.+.+.+..+.. 
T Consensus       295 ----------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~-  363 (400)
T PRK11646        295 ----------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL-  363 (400)
T ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc-
Confidence                      123344555667788888888999999999999999999999999999999999999999987543210 


Q ss_pred             CCCccccccccchhhHHHHHHHHHHHHHHHHHh
Q 008450          503 GGGWLADNINRGRLDLFYGLLAILSIINLVIYL  535 (565)
Q Consensus       503 ~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~  535 (565)
                                 +.....|++.+++.+++.+...
T Consensus       364 -----------~~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        364 -----------NQPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             -----------CCcchHHHHHHHHHHHHHHHHH
Confidence                       0112345566666666655543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.93  E-value=3.1e-24  Score=238.41  Aligned_cols=335  Identities=30%  Similarity=0.503  Sum_probs=271.3

Q ss_pred             HHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008450           29 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQL  108 (565)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~  108 (565)
                      ++|||+..++.+|+.+.+|++.+++..+...+.....+.++++|+++|+++||++++.++.++..+|..+.++++. |..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence            4789999999999999999999999999999999999999999999999999999999999999999998887532 220


Q ss_pred             CCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHH
Q 008450          109 RPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV  188 (565)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~  188 (565)
                                     .+..+....+++.++.++|.|+..|+..++.+|++++++   +++|.++++++++++|+|+++++
T Consensus        80 ---------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~  141 (654)
T TIGR00926        80 ---------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLIST  141 (654)
T ss_pred             ---------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHH
Confidence                           011234557889999999999999999999999998654   23488899999999999999999


Q ss_pred             HHHHHhcccc-------cchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccc
Q 008450          189 TVLVYIQDEI-------SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLY  261 (565)
Q Consensus       189 ~i~g~l~~~~-------gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (565)
                      ++.+++.+..       +|.++|.++++.++++++++....+++++++|.+++..+..+.+....+++....+..     
T Consensus       142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~-----  216 (654)
T TIGR00926       142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH-----  216 (654)
T ss_pred             HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-----
Confidence            9999997443       6999999999999999888888888777777777766666666666665432211100     


Q ss_pred             cCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhh
Q 008450          262 EDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQA  341 (565)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (565)
                                  ...++.+.+...                ...+.++++|++++++++++...++|..+.|..+.+..|.
T Consensus       217 ------------~~~~~ld~a~~~----------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa  268 (654)
T TIGR00926       217 ------------WPLHWLDYAKDK----------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQA  268 (654)
T ss_pred             ------------cchhHHHHhccc----------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence                        012233322110                0223467889999999999999999999999999988888


Q ss_pred             hcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008450          342 TTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKR  417 (565)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~  417 (565)
                      ..++..++++.+++.+++.++.+.+++..|+++..+.|..+|...  .+++..++.+|++++.++++++...+...
T Consensus       269 ~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~--~ls~l~k~~iG~~la~la~~va~~ve~~~  342 (654)
T TIGR00926       269 TRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT--RFTSLRKMAVGGLLAALSFFVAALVQLKV  342 (654)
T ss_pred             HHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777778889999999999999999999999877777766543  46788999999999999999998887554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=7.7e-24  Score=226.18  Aligned_cols=394  Identities=13%  Similarity=0.047  Sum_probs=244.2

Q ss_pred             CCCCCCchhhHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHH
Q 008450           14 SPADPSKTGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT   93 (565)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~   93 (565)
                      ++....-...+++..++.......++.+ .++++.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~   93 (417)
T PRK10489         16 HPAFRAVFIARFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCG   93 (417)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHH
Confidence            4444433345666666644444444444 567788999999999999999999999999999999 99999999888888


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhccee
Q 008450           94 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  173 (565)
Q Consensus        94 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (565)
                      ++.++.+...-.+.                   .+.+.+++.|++.|++.+...+...+++.|..|+++      |+++.
T Consensus        94 ~~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  148 (417)
T PRK10489         94 LGFIGLALNAFLPE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAG  148 (417)
T ss_pred             HHHHHHHHHHHcCC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHH
Confidence            77766554211010                   136778899999999999888999999999999887      99999


Q ss_pred             ehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccC-CCCCchHHHHHHHHHHHHhcccc
Q 008450          174 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKK-SSGSPIVHIFQVIVAAIKKRKMD  252 (565)
Q Consensus       174 ~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  252 (565)
                      ++.....++|..+||.+++++.+..+|++.|++.++..+++.++.+..++ .++++ ++.++..+..             
T Consensus       149 ~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~-------------  214 (417)
T PRK10489        149 AITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPA-LPPPPQPREHPLRSLL-------------  214 (417)
T ss_pred             HHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC-CCCCCcccccchHHHH-------------
Confidence            99999999999999999999998889999999877666655444433221 11100 0000000000             


Q ss_pred             CCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcc
Q 008450          253 LPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQ  332 (565)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (565)
                                                 +..                      ......+.+............... ...
T Consensus       215 ---------------------------~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~  244 (417)
T PRK10489        215 ---------------------------AGF----------------------RFLLASPVVGGIALLGGLLTMASA-VRV  244 (417)
T ss_pred             ---------------------------HHH----------------------HHHHcChHHHHHHHHHHHHHHHHh-HHH
Confidence                                       000                      000011111111101011111111 111


Q ss_pred             cchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 008450          333 MITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL  412 (565)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~  412 (565)
                      ....+..+..+.+      ....+.+.....+..++...+.+++.+    |.      .+.+.+..+.++..++++.+..
T Consensus       245 ~~p~~~~~~~g~~------~~~~g~~~~~~~~g~~ig~~~~~~l~~----~~------~~~~~l~~~~~~~~~~~~~~~~  308 (417)
T PRK10489        245 LYPALADEVWQMG------AAQIGLLYAAVPLGAALGALTSGWLAH----SA------RPGLLMLLSTLGSFLAVGLFGL  308 (417)
T ss_pred             hhHHHHHhccCCC------hhHhHHHHHHHHHHHHHHHHHHHHhhh----cc------CcchHHHHHHHHHHHHHHHHHc
Confidence            1111222111111      111233344444455555555554432    21      1123355666666666655443


Q ss_pred             HHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhh
Q 008450          413 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVA  492 (565)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~  492 (565)
                                         ..+++...+..++.+++.+...+..++++.+..|++.||+++|+++....+|..+|+.+.+
T Consensus       309 -------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G  369 (417)
T PRK10489        309 -------------------MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLG  369 (417)
T ss_pred             -------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence                               1233445667777888888777888899999999999999999999999999999999999


Q ss_pred             hhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccc
Q 008450          493 VVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAG  549 (565)
Q Consensus       493 ~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~~~~~  549 (565)
                      .+.+..+                ....+...+++.++..++.+...+++|+++++|.
T Consensus       370 ~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (417)
T PRK10489        370 GLGAMMT----------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPP  410 (417)
T ss_pred             HHHHHhc----------------hhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence            8864221                2334555555555555555555566665554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=1.7e-23  Score=222.33  Aligned_cols=362  Identities=13%  Similarity=0.070  Sum_probs=235.2

Q ss_pred             HHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008450           35 AVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK  114 (565)
Q Consensus        35 ~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  114 (565)
                      .....+.+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++++++.           
T Consensus        34 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-----------  101 (406)
T PRK11551         34 AGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFGLFSLATAQAW-----------  101 (406)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhc-----------
Confidence            34455667789999999999999999999999999999999999 999999999999988888887763           


Q ss_pred             CCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHh
Q 008450          115 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI  194 (565)
Q Consensus       115 ~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l  194 (565)
                                   +++.+++.|++.|++.+...+...+++.|++|+++      |++++++.+...++|..+++.+++.+
T Consensus       102 -------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~  162 (406)
T PRK11551        102 -------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLA  162 (406)
T ss_pred             -------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         27779999999999999999999999999999988      99999999999999999999999999


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCc
Q 008450          195 QDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTE  274 (565)
Q Consensus       195 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (565)
                      .+..+|++.|++.+++.++..++.....++.+++++++...+                                     +
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------------------------~  205 (406)
T PRK11551        163 AGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK-------------------------------------Q  205 (406)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch-------------------------------------h
Confidence            888999999998776555444333332222111000000000                                     0


Q ss_pred             chhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccccC
Q 008450          275 QFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIP  354 (565)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (565)
                      .....+..  .                 +.  .+.++........+......+....+.+ .+... .+.+      ...
T Consensus       206 ~~~~~~~~--~-----------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~-~g~s------~~~  256 (406)
T PRK11551        206 RAPVLRAL--F-----------------GE--GRATATLLLWISYFFTLIVLYFLLNWLP-SLLVG-QGLS------RSQ  256 (406)
T ss_pred             hhhhHHHH--h-----------------hh--hhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-CCCC------hhh
Confidence            00000000  0                 00  0001111111111111111111111111 11111 1111      112


Q ss_pred             cchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCccee
Q 008450          355 AGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVS  434 (565)
Q Consensus       355 ~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  434 (565)
                      .+.......+..++...+.+++.|++.+|          +.+..+.+...+++..+.+                   ..+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~----------~~~~~~~~~~~~~~~~~~~-------------------~~~  307 (406)
T PRK11551        257 AGLVQIAFNIGGALGSLLIGALMDRLRPR----------RVVLLIYAGILASLAALAA-------------------APS  307 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHh-------------------cCc
Confidence            33444455556666777777777665544          2233344444444433332                   123


Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccc
Q 008450          435 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRG  514 (565)
Q Consensus       435 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~  514 (565)
                      .+.+.+..++.+++.....+..+++..|.+|++.||++.|+.+....+|..+|+.+.+.+.+..               +
T Consensus       308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~---------------~  372 (406)
T PRK11551        308 FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG---------------R  372 (406)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC---------------C
Confidence            3344556667777777778888899999999999999999999999999999999999875321               1


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhh
Q 008450          515 RLDLFYGLLAILSIINLVIYLIC  537 (565)
Q Consensus       515 ~~~~~f~~~a~l~lv~~~~~~~~  537 (565)
                      .+...++..+.+.+++.+..+..
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        373 STVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH
Confidence            13455666666666666555544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.93  E-value=1.4e-23  Score=227.96  Aligned_cols=403  Identities=11%  Similarity=0.038  Sum_probs=233.3

Q ss_pred             CCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCc
Q 008450           46 MHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQAS  125 (565)
Q Consensus        46 l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  125 (565)
                      +|.+..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++... .           .+...+.
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~-~-----------~~~~~~~  116 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFG-F-----------TSIGPDN  116 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccc-c-----------ccccccc
Confidence            488999999999999999999999999999999 99999999999999988887764100 0           0000011


Q ss_pred             chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhc--------cc
Q 008450          126 GFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ--------DE  197 (565)
Q Consensus       126 ~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~--------~~  197 (565)
                      ...+..++++|+++|++.|+..|...++++|++|+++      |+++++.......+|.++++.+++.+.        +.
T Consensus       117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  190 (479)
T PRK10077        117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT  190 (479)
T ss_pred             hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence            1236678899999999999999999999999999998      999999999999999999887766543        45


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcchh
Q 008450          198 ISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFH  277 (565)
Q Consensus       198 ~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (565)
                      +|||++|++.++..++..+..++. ++.++....+.+.++..+.... ..  +.                     .+...
T Consensus       191 ~gWr~~f~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~~~~~~~~~~-~~--~~---------------------~~~~~  245 (479)
T PRK10077        191 DGWRYMFASEAIPALLFLMLLYFV-PETPRYLMSRGKQEQAEGILRK-IM--GN---------------------TLATQ  245 (479)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHcCCHHHHHHHHHH-Hc--CC---------------------hhHHH
Confidence            799999998776665554443332 3211100000111111000000 00  00                     00000


Q ss_pred             HHhHH-HHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccch---hhhhhhhccccccccccc
Q 008450          278 FLDKA-AIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMIT---FSVEQATTMERSIGRFQI  353 (565)
Q Consensus       278 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  353 (565)
                      ..+.. ......                 ....++ .................+.+...   .....+...+ .. +...
T Consensus       246 ~~~~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~-g~~~  305 (479)
T PRK10077        246 ALQEIKHSLDHG-----------------RKTGGK-LLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFK-TL-GAST  305 (479)
T ss_pred             HHHHHHHHHHHh-----------------hhhhhh-hcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH-Hc-CCCC
Confidence            00000 000000                 000000 00000000000000001111100   0000000000 00 0011


Q ss_pred             -CcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcc
Q 008450          354 -PAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLP  432 (565)
Q Consensus       354 -~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (565)
                       ..........+..++..++.+++.|++.+|          ..+..+.+++.++++.+......               .
T Consensus       306 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r----------~~~i~~~~~~~v~~~~l~~~~~~---------------~  360 (479)
T PRK10077        306 DIALLQTIIVGVINLTFTVLAIMTVDKFGRK----------PLQIIGALGMAIGMFSLGTAFYT---------------Q  360 (479)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----------HHHHHhHHHHHHHHHHHHHHHhc---------------C
Confidence             112233334445556666777776665554          33677777777777666543210               1


Q ss_pred             eeehhhHHHHHHHHHHHHHh-hhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCcccccc
Q 008450          433 VSVFLLIPQFFLVGAGEAFI-YTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNI  511 (565)
Q Consensus       433 ~s~~~li~~~~l~g~g~~~~-~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~  511 (565)
                      ....+.....++.+.+.... .|..+.++.|.+|++.|++++|+.+...+++..+++.+.+.+..       .+|..++.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~-------~~~~~~~~  433 (479)
T PRK10077        361 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDK-------NSWLVAHF  433 (479)
T ss_pred             cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-------ccchhhhc
Confidence            12223334445555555443 36778999999999999999999999999999999888876541       12322211


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCc
Q 008450          512 NRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPK  547 (565)
Q Consensus       512 ~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~~~  547 (565)
                      .   ....|++.++++++++++.+.+.+|+|+++.+
T Consensus       434 ~---~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  466 (479)
T PRK10077        434 H---NGFSYWIYGCMGVLAALFMWKFVPETKGKTLE  466 (479)
T ss_pred             c---CccHHHHHHHHHHHHHHHHHhccccCCCCCHH
Confidence            1   13456777778888877777777776665543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.93  E-value=2e-23  Score=219.39  Aligned_cols=356  Identities=15%  Similarity=0.057  Sum_probs=217.8

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      +.......+.+.+++|+|..|.+++.+.+.+++.+++++.|+++||+ |||+++..++.....+.+.....   +     
T Consensus         7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~---~-----   77 (368)
T TIGR00903         7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP---F-----   77 (368)
T ss_pred             HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh---c-----
Confidence            44556666677889999999999999999999999999999999999 99998765555444443222221   1     


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                      ++..++++|+++|+|.+.. +.....++|++|+++      |++++++.....++|.++++.++
T Consensus        78 ----------------~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~  134 (368)
T TIGR00903        78 ----------------NYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAG  134 (368)
T ss_pred             ----------------cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                            3788999999999999964 555666799999888      99999999999999999999999


Q ss_pred             HHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccC
Q 008450          192 VYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIH  271 (565)
Q Consensus       192 g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (565)
                      +++.+..|||+.|.+.+++.++..++.+...|+.++++++..+..+..       +                        
T Consensus       135 ~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~-------~------------------------  183 (368)
T TIGR00903       135 LKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAV-------K------------------------  183 (368)
T ss_pred             HHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHH-------H------------------------
Confidence            999999999999998777665554444443332111110000000000       0                        


Q ss_pred             CCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhccccccccc
Q 008450          272 HTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRF  351 (565)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (565)
                           ++   .                      +..++++........+.....++....+.++.+ .+. .++      
T Consensus       184 -----~~---~----------------------~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L-~~~-g~s------  225 (368)
T TIGR00903       184 -----EF---G----------------------ALAGRKDLWIIGAILGFGVALFDNLAIWLEAAL-RPA-GLE------  225 (368)
T ss_pred             -----HH---H----------------------HHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC-CCC------
Confidence                 00   0                      001122222222223333333334444444433 211 111      


Q ss_pred             ccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCc
Q 008450          352 QIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATL  431 (565)
Q Consensus       352 ~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (565)
                       ...+....+......+.   ...+.|+..||. +     +...+....++.++....+..                   
T Consensus       226 -~~~~~~~~l~~~~g~~g---~~~~~d~~~r~~-~-----r~~~~~~~~~~~a~~~~~~~~-------------------  276 (368)
T TIGR00903       226 -DIAGDAVALAILAGLIG---VAVIPDRVARAG-L-----RSIYIRAAALLIAAFFLALAF-------------------  276 (368)
T ss_pred             -hHHHHHHHHHHHHHHHH---HHHhhHHhhhhh-h-----HHHHHHHHHHHHHHHHHHHHH-------------------
Confidence             11122222222222222   234444433331 1     111122223333333333222                   


Q ss_pred             ceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCcccccc
Q 008450          432 PVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNI  511 (565)
Q Consensus       432 ~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~  511 (565)
                      ..+....+....+.+++....++..+++..|..|++.||+++|+.+...++++.+++.+.+.+..               
T Consensus       277 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~---------------  341 (368)
T TIGR00903       277 ELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS---------------  341 (368)
T ss_pred             ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc---------------
Confidence            11222333444555555666667788999999999999999999999999999999998876641               


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHh
Q 008450          512 NRGRLDLFYGLLAILSIINLVIYL  535 (565)
Q Consensus       512 ~~~~~~~~f~~~a~l~lv~~~~~~  535 (565)
                         +....|.++++..+++.+..+
T Consensus       342 ---~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       342 ---SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHH
Confidence               134567777888888776654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.93  E-value=1.7e-23  Score=217.39  Aligned_cols=353  Identities=13%  Similarity=0.103  Sum_probs=232.9

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++..++.......++.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++..+.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         7 AQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555566666654 6899999999999999999999999999999999 99999999999988888888777


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      ...+                   ..+.+.++++|++.|++.+...+...+++.|++|+++      |++++++.+...++
T Consensus        85 ~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  139 (365)
T TIGR00900        85 ALLG-------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSL  139 (365)
T ss_pred             HHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHH
Confidence            4211                   0247889999999999999999999999999999887      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchH-HHHHHHHHHHHhccccCCCCcCccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIV-HIFQVIVAAIKKRKMDLPCNVGMLY  261 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  261 (565)
                      |.++||.+++++.+..+||+.|++.++..+++.+..+..+.+.+++++ .++.+ +..+                     
T Consensus       140 g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------------  197 (365)
T TIGR00900       140 FYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASE-IQALSNAVLR---------------------  197 (365)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcc-ccccchhHHH---------------------
Confidence            999999999999999999999998877666554444433221111100 00000 0000                     


Q ss_pred             cCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHH-HHHHHHHHhhhcccchhhhhh
Q 008450          262 EDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPI-WATTIIFWTTYAQMITFSVEQ  340 (565)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  340 (565)
                                     +..+..                      +...+.+.+...... ...............+.+..+
T Consensus       198 ---------------~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (365)
T TIGR00900       198 ---------------DTREGI----------------------KFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSK  240 (365)
T ss_pred             ---------------HHHhHH----------------------HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence                           000000                      000111111111111 111111111111111222221


Q ss_pred             hhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008450          341 ATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSV  420 (565)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~  420 (565)
                      ..+.+      ....+.+.....+..++...+.+++.++..+|          +.+..+.++..+++..+.+..      
T Consensus       241 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~------  298 (365)
T TIGR00900       241 YLGRG------STHYGWVLAAFGLGALLGALLLGLLGRYFKRM----------ALMTGAIFVIGLAILVVGLTP------  298 (365)
T ss_pred             HhCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh----------HHHHHHHHHHHHHHHHHHhhc------
Confidence            11111      11123344444555555556666554333222          334455555555555544321      


Q ss_pred             hhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 008450          421 ARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK  495 (565)
Q Consensus       421 ~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~  495 (565)
                                 + +.+...+..++.+++.+...+...++..|.+|++.||++.|+.++...++..+++.+.+.+.
T Consensus       299 -----------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       299 -----------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             -----------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       1 24556677888999999999999999999999999999999999999999999999998875

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=8.3e-24  Score=231.19  Aligned_cols=382  Identities=12%  Similarity=0.056  Sum_probs=239.6

Q ss_pred             HHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 008450           34 IAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC  113 (565)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  113 (565)
                      +.....+.+.+++|.+..+.+|+.+.|.++..++.++.|+++||+ |||+++.++.+++.+++++++++++         
T Consensus        24 iv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~~~~~~~a~~---------   93 (495)
T PRK14995         24 VLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLASLAAAFSPT---------   93 (495)
T ss_pred             HHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHcCC---------
Confidence            445556777889999999999999999999999999999999999 9999999999999999999998833         


Q ss_pred             CCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccC-CCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450          114 KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQF-DEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                                     ++.++++|+++|+|.++..|.....+.+.+ |+++      |+++++++....++|..+||.+++
T Consensus        94 ---------------~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g~~~~~~~~g~~~gp~lgg  152 (495)
T PRK14995         94 ---------------ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALGVWAAVGSGGAAFGPLVGG  152 (495)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           788999999999999999998888888877 4555      999999999999999999999999


Q ss_pred             HhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHH------HHHHHHhccccCCCCcCccccCCcc
Q 008450          193 YIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQV------IVAAIKKRKMDLPCNVGMLYEDTPE  266 (565)
Q Consensus       193 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  266 (565)
                      ++.++.|||+.|++...+.++.+++.....|+.+.++.++.+.......      +....+.  .  . +          
T Consensus       153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~--~--~-~----------  217 (495)
T PRK14995        153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKT--A--L-K----------  217 (495)
T ss_pred             HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHh--c--c-c----------
Confidence            9999999999999987766665555444444322111111111111000      0011110  0  0 0          


Q ss_pred             ccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccc
Q 008450          267 ASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER  346 (565)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (565)
                       .++.........-.+... ...+...+.+...+....+..+++.........+....... ......+.+.+.....+ 
T Consensus       218 -~~~~~~~~~~~~~~~~~~-l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lq~v~g~s-  293 (495)
T PRK14995        218 -GFLSLWVTSLTLLTGALL-LGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLV-GFELLMAQELQFVHGLS-  293 (495)
T ss_pred             -cCCchHHHHHHHHHHHHH-HHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCC-
Confidence             000000000000000000 00000000000001111111222221111111111111111 11111111222111111 


Q ss_pred             cccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 008450          347 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGL  426 (565)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~  426 (565)
                           ....+.......+...+..++.+++.+++.+|          +.+..|.++..+++..+.....           
T Consensus       294 -----~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~----------~~~~~g~~~~~~~~~~l~~~~~-----------  347 (495)
T PRK14995        294 -----PLEAGMFMLPVMVASGFSGPIAGILVSRLGLR----------LVATGGMALSALSFYGLAMTDF-----------  347 (495)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch----------HHHHHHHHHHHHHHHHHHHhcC-----------
Confidence                 12234444445566667777778776655443          2356777777777765544311           


Q ss_pred             CCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 008450          427 TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKK  496 (565)
Q Consensus       427 ~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~  496 (565)
                           ..+.+......++.|+|.+...+.....+.+.+|++.+|.+++++++.+.+|..+|+.+.+.+..
T Consensus       348 -----~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        348 -----STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             -----CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 22334456678889999999999889999999999999999999999999999999999998753

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=1.4e-23  Score=222.79  Aligned_cols=345  Identities=11%  Similarity=0.095  Sum_probs=228.0

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++...+++...+.+++|+++++|++..+.+++.+.+.+++.+.+++.|+++||+ |||+++.++.++..++.++.+++
T Consensus        15 ~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         15 SSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHHHHHHHHHHH
Confidence            67888888888899999999999999999999999999999999999999999999 99999999999998888888877


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      ++                        ++.++++|.+.|.+.+...+....+..|..|+++      |++++++.+...++
T Consensus        94 ~~------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~l  143 (395)
T PRK10054         94 NN------------------------VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNI  143 (395)
T ss_pred             hH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHH
Confidence            33                        6667778888888888888889999999999888      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYE  262 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (565)
                      |.++||.+++++.. .+|+.+|++.+++.++.++...+..++.+  ++++++....        +               
T Consensus       144 g~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~--~~~~~~~~~~--------~---------------  197 (395)
T PRK10054        144 GWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE--KAIATETGSV--------W---------------  197 (395)
T ss_pred             HHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc--cccccchhhh--------h---------------
Confidence            99999999998875 79999999887776665444333222211  1110000000        0               


Q ss_pred             CCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhh
Q 008450          263 DTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQAT  342 (565)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (565)
                                       +..                      ...++++........+............. ..+.....
T Consensus       198 -----------------~~~----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~  237 (395)
T PRK10054        198 -----------------SPS----------------------VLLQDKALLWFTCSGFLASFVSGAFASCI-SQYVMVVA  237 (395)
T ss_pred             -----------------hhh----------------------hhccCceehHHHHHHHHHHHHHHHhhhhH-HHHHHHhc
Confidence                             000                      00011111111111111111111111111 11111100


Q ss_pred             cccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008450          343 TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVAR  422 (565)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~  422 (565)
                      ..+..    ....+.+...+........+..+++.|+.          +++..+..+.++..+++..+.+.         
T Consensus       238 ~~~~~----~~~~g~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~---------  294 (395)
T PRK10054        238 DSDFA----EKVVAVVLPVNAAMVVSLQYSVGRRLNAA----------NIRPLMTAGTLCFVIGLVGFIFS---------  294 (395)
T ss_pred             ccchH----HHHHHHHHHhhhhheeeehhHHHHHHccC----------CchhHHHHHHHHHHHHHHHHHHc---------
Confidence            00000    00111222223233333333444443322          22234566776777766555432         


Q ss_pred             hcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhc
Q 008450          423 AVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKV  497 (565)
Q Consensus       423 ~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~  497 (565)
                               ..+.+.+.+..++.++|+....|..++.+.+.+|++.||++.+..+ ..++|..+||.+.+.+.+.
T Consensus       295 ---------~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~  359 (395)
T PRK10054        295 ---------GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT  359 (395)
T ss_pred             ---------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH
Confidence                     1123344557788999999888999999999999999999998765 5668999999999998653

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.93  E-value=3.2e-23  Score=219.89  Aligned_cols=356  Identities=13%  Similarity=0.110  Sum_probs=232.6

Q ss_pred             HHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008450           37 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  116 (565)
Q Consensus        37 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (565)
                      ...+.+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..++.+.+++.++++++++            
T Consensus        30 ~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~~------------   96 (393)
T PRK09705         30 PLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYPQ------------   96 (393)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCcc------------
Confidence            445567789999999999999999999999999999999999 9999999999999999999999843            


Q ss_pred             CcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcc
Q 008450          117 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  196 (565)
Q Consensus       117 ~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~  196 (565)
                                  ++.++++|+++|+|.+...+..+.++.|++| ++      |+++++.+....++|..+|+.+++++.+
T Consensus        97 ------------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~  157 (393)
T PRK09705         97 ------------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQ  157 (393)
T ss_pred             ------------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        6778999999999999999999999999987 66      9999999999999999999999999888


Q ss_pred             cc-cchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcc
Q 008450          197 EI-SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQ  275 (565)
Q Consensus       197 ~~-gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (565)
                      +. +||..+.+.++..++++...+...++    +|++++.+                   +.                  
T Consensus       158 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------------------~~------------------  196 (393)
T PRK09705        158 HSETWYQTLAWWALPAVVALFAWWWQSAR----EVASSHKT-------------------TT------------------  196 (393)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCccccCC-------------------Cc------------------
Confidence            75 89998876655544433333222111    11100000                   00                  


Q ss_pred             hhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccccCc
Q 008450          276 FHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPA  355 (565)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (565)
                                           ...   +  ..++++..............+.....+.+..+ .+ ...+      ....
T Consensus       197 ---------------------~~~---~--~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l-~~-~g~s------~~~a  242 (393)
T PRK09705        197 ---------------------TPV---R--VVFTPRAWTLGVYFGLINGGYASLIAWLPAFY-IE-IGAS------AQYS  242 (393)
T ss_pred             ---------------------CCc---c--cccCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCC------hhhh
Confidence                                 000   0  00111111111111111112222222222222 21 1111      1122


Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceee
Q 008450          356 GSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSV  435 (565)
Q Consensus       356 ~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  435 (565)
                      +....+..+..++...+.+++.++..+|          +.+.++..+..++...+...                  +.+.
T Consensus       243 g~~~~~~~i~~i~g~~~~g~l~~r~~~~----------~~~~~~~~l~~~~~~~~~~~------------------~~~~  294 (393)
T PRK09705        243 GSLLALMTLGQAAGALLMPAMARHQDRR----------KLLMLALVLQLVGFCGFIWL------------------PLQL  294 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccch----------HHHHHHHHHHHHHHHHHHHc------------------cchH
Confidence            3344455566666666666664443332          33555666666665544332                  1111


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhHhhhhccC-CchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccc
Q 008450          436 FLLIPQFFLVGAGEAFIYTGQLDFFITKS-PKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRG  514 (565)
Q Consensus       436 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~  514 (565)
                      ..+  ..++.+++.+...|.......+.. |++.+|+.+|+.+....++..++|.+.+++.+..+               
T Consensus       295 ~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g---------------  357 (393)
T PRK09705        295 PVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG---------------  357 (393)
T ss_pred             HHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------
Confidence            111  233456676677777766666676 46789999999999999999999999998865322               


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 008450          515 RLDLFYGLLAILSIINLVIYLICAVWYKPK  544 (565)
Q Consensus       515 ~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~  544 (565)
                      ++...|.+.++++++..+..+...+|++.+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK09705        358 NYLMDWAFHALCVVGLMIITLRFAPARFPQ  387 (393)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            235567777777777777777776665433

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=7e-23  Score=222.24  Aligned_cols=392  Identities=11%  Similarity=0.050  Sum_probs=236.5

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++..+..+.+...++.+. +++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++.++++++
T Consensus        18 ~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~   95 (471)
T PRK10504         18 GFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTLGSLFCALS   95 (471)
T ss_pred             HHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHh
Confidence            44555555565666666654 57999999999999999999999999999999999 99999999999999888887776


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      .                        +++.++++|+++|+|.+...|....++.|.+|+++      |++++++.....++
T Consensus        96 ~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  145 (471)
T PRK10504         96 G------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQV  145 (471)
T ss_pred             C------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHH
Confidence            2                        26778999999999999999999999999999887      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHH-HHHHHhccccCCCCcCccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVI-VAAIKKRKMDLPCNVGMLY  261 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  261 (565)
                      |..+||.+++++.+..|||+.|++..+..++..++.....++.+.++++.+......... ...... ..  .....   
T Consensus       146 g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~--~~~~~---  219 (471)
T PRK10504        146 GPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTL-AL--DGSKG---  219 (471)
T ss_pred             HHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHH-HH--hcCCc---
Confidence            999999999999999999999998876665555444444333222111111111100000 000000 00  00000   


Q ss_pred             cCCccccccCCCcchhHHhHHH------HhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccch
Q 008450          262 EDTPEASRIHHTEQFHFLDKAA------IVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMIT  335 (565)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (565)
                            ..+.............      ..++..     ...+  ....+..++ |.+...+.................+
T Consensus       220 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~  285 (471)
T PRK10504        220 ------LGLSPLAIAGLVAVGVVALLLYLLHARN-----NNRA--LFSLKLFRT-RTFSLGLAGSFAGRIGSGMLPFMTP  285 (471)
T ss_pred             ------CCcchHHHHHHHHHHHHHHHHHHHHHhc-----CCCC--ccCHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0000000000000000      000110     0000  111111122 2222221111111111111111112


Q ss_pred             hhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008450          336 FSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVER  415 (565)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~  415 (565)
                      .+.+...+.+      ....+.......+..++..++.+++.+|+.+|          +.+..+.++..++..++.+...
T Consensus       286 ~~~~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~----------~~~~~~~~~~~~~~~~~~~~~~  349 (471)
T PRK10504        286 VFLQIGLGFS------PFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR----------RVLVATTLGLALVSLLFMLVAL  349 (471)
T ss_pred             HHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch----------HHHHHHHHHHHHHHHHHHhccc
Confidence            2222111111      11122333333444444556666665554433          3356666666666555443210


Q ss_pred             HHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 008450          416 KRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK  495 (565)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~  495 (565)
                                      ..+.+.+.+..++.+++.+..++..+.++.+.+|++.+|+++|+.++...+|..+|+.+.+.+.
T Consensus       350 ----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll  413 (471)
T PRK10504        350 ----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLL  413 (471)
T ss_pred             ----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            1122233445677788888888899999999999999999999999999999999999999876


Q ss_pred             hcc
Q 008450          496 KVT  498 (565)
Q Consensus       496 ~~~  498 (565)
                      ...
T Consensus       414 ~~~  416 (471)
T PRK10504        414 GLF  416 (471)
T ss_pred             HHh
Confidence            543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=1.5e-22  Score=215.38  Aligned_cols=343  Identities=13%  Similarity=0.081  Sum_probs=221.0

Q ss_pred             HHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008450           29 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQL  108 (565)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~  108 (565)
                      ++.....+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||++.++.++..++.+++.++.     
T Consensus        27 ~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~-----   99 (406)
T PRK15402         27 IANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ-----   99 (406)
T ss_pred             hhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc-----
Confidence            333334444443 5678999999999999999999999999999999999 999999999999999988887773     


Q ss_pred             CCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHH
Q 008450          109 RPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV  188 (565)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~  188 (565)
                                         +++.+++.|+++|++.+...+...+++.|.+|+++      |.++.++......+|..+||
T Consensus       100 -------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~  154 (406)
T PRK15402        100 -------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGP  154 (406)
T ss_pred             -------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHH
Confidence                               26778999999999999988999999999999887      88888888888889999999


Q ss_pred             HHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCcccc
Q 008450          189 TVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS  268 (565)
Q Consensus       189 ~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (565)
                      .+++++.+..+||+.|++.+++.+++.+..+...|+.+++++++.+..+..                             
T Consensus       155 ~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  205 (406)
T PRK15402        155 LVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELG-----------------------------  205 (406)
T ss_pred             HHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHH-----------------------------
Confidence            999999998999999998877766655544433332111100000000000                             


Q ss_pred             ccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccc
Q 008450          269 RIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSI  348 (565)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (565)
                                 +..                     ....++++............... ..+....+.+..+....+   
T Consensus       206 -----------~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~---  249 (406)
T PRK15402        206 -----------RDY---------------------KLVLKNRRFVAGALALGLVSLPL-LAWIALSPVILISGEQLS---  249 (406)
T ss_pred             -----------HHH---------------------HHHHcCcHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhCCC---
Confidence                       000                     00011111111111111111111 111111111211111111   


Q ss_pred             cccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 008450          349 GRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTT  428 (565)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (565)
                         ....+.......+..++..++.+++.|+..+|          +.+.++.++..++...+.+....            
T Consensus       250 ---~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~----------~~~~~~~~~~~~g~~~~~~~~~~------------  304 (406)
T PRK15402        250 ---SYEYGLLQVPVFGALIAGNLTLARLTSRRPLR----------SLIRMGLWPMVAGLLLAALATVI------------  304 (406)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHHHHHHHHHc------------
Confidence               11112222222333444555556654443332          34667777777777766553210            


Q ss_pred             CCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 008450          429 ATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKK  496 (565)
Q Consensus       429 ~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~  496 (565)
                        ...+++++++..++.++|.+...+..+...... +++.||+..+++++.+.++..+|+.+.+.+..
T Consensus       305 --~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        305 --SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             --ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence              023455667788889999988887777766544 45889999999999999999999999988753

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.92  E-value=7.1e-23  Score=230.27  Aligned_cols=155  Identities=17%  Similarity=0.165  Sum_probs=134.6

Q ss_pred             HHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008450           35 AVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK  114 (565)
Q Consensus        35 ~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  114 (565)
                      +..+.+++.+++|++..+.+++.+++.++.+++.+++|+++||+ |||+++++++++.+++.++++++++          
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~s----------  254 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQG----------  254 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhh----------
Confidence            55567778889999999999999999999999999999999999 9999999999999999999888733          


Q ss_pred             CCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHh
Q 008450          115 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI  194 (565)
Q Consensus       115 ~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l  194 (565)
                                    ++.++++|+++|+|.|+..|....++.|.+|++.      |++.+++..+...+|.++++.++..+
T Consensus       255 --------------~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       255 --------------YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          7789999999999999999999999999999998      99999999999999999998877665


Q ss_pred             ccc-------------ccchhhHHHHHHHHHHHHHHHHh
Q 008450          195 QDE-------------ISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       195 ~~~-------------~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      ...             .+||+.|++.++..++++++.++
T Consensus       315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~  353 (742)
T TIGR01299       315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF  353 (742)
T ss_pred             HHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            432             36899888877666655544443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.92  E-value=1.8e-23  Score=216.37  Aligned_cols=348  Identities=20%  Similarity=0.282  Sum_probs=225.8

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++..+......+.++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~   82 (352)
T PF07690_consen    4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAFA   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhhh
Confidence            34555566555555666588999999999999999999999999999999999999 99999999999999996666665


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      +                        +.+.++++|++.|++.+...+...+++.|++|+++      |++++++.....++
T Consensus        83 ~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~  132 (352)
T PF07690_consen   83 S------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSL  132 (352)
T ss_dssp             C------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHH
T ss_pred             h------------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhh
Confidence            2                        25589999999999999999999999999999988      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYE  262 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (565)
                      |.++||.+++++.+..+||+.|++.+++.++..++.....++.+++++..++.++.                        
T Consensus       133 g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------  188 (352)
T PF07690_consen  133 GSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE------------------------  188 (352)
T ss_dssp             HHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT------------------------
T ss_pred             hhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc------------------------
Confidence            99999999999999999999999998887776654333332211111110000000                        


Q ss_pred             CCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHH-HHHHHHHHHHhhhcccchhhhhhh
Q 008450          263 DTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLL-PIWATTIIFWTTYAQMITFSVEQA  341 (565)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  341 (565)
                               ..                     .+.++.. ..+...+++.+.... ..+........ .....+.+..+.
T Consensus       189 ---------~~---------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~  236 (352)
T PF07690_consen  189 ---------SK---------------------KPKPLKP-GFKSLFKNPVLWILLIAFFLFFFVFSG-FSFFLPLYLQEV  236 (352)
T ss_dssp             --------------------------------HHHCCCH--CTHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHCCHH
T ss_pred             ---------cc---------------------ccccccc-ccccccccchhhhhhhhhhHHHHHHHH-hhcccchhhhhc
Confidence                     00                     0000000 001112222221111 11111111111 111111221221


Q ss_pred             hcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008450          342 TTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVA  421 (565)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~  421 (565)
                      .+.+ .    ....+.+..+..+...+...+.+++.+|+.++          +..........+....+.+...      
T Consensus       237 ~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~------  295 (352)
T PF07690_consen  237 LGFS-G----PSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR----------RRLLIAILLLILGALGLLLLPF------  295 (352)
T ss_dssp             HHCC-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHCCSHH------
T ss_pred             cCCC-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH----------HHHHHHHHHHHHHHHHHHHHHH------
Confidence            1221 0    01222334445555555666777776554432          1223333333333332222111      


Q ss_pred             hhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhh
Q 008450          422 RAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSS  488 (565)
Q Consensus       422 ~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~  488 (565)
                                ..+..+.+...++.+++.+...+...++..+.+|++.||++.|+.++..++|..+||
T Consensus       296 ----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  296 ----------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             ----------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence                      123455666888899999999999999999999999999999999999999999886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.92  E-value=1.1e-22  Score=213.00  Aligned_cols=366  Identities=11%  Similarity=0.043  Sum_probs=229.2

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHH-HHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAI-FAAVQTLGTGMLAM  101 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~-~~~~~~~~~~~~a~  101 (565)
                      ..++..++.....+.++.|+++++|.+..+.+++.+.+.+...+..++.|+++||+ ||||.+++ +.....++.+++++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHHh
Confidence            45667777788888899999999999999999999999999999999999999999 99887655 55555566677776


Q ss_pred             HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcce--eehhhHH
Q 008450          102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF--FSRFFFF  179 (565)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~  179 (565)
                      ++                        +++.+++.|+++|.+.+...|...++..|..|+++      |++.  .+.....
T Consensus        84 ~~------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~  133 (375)
T TIGR00899        84 NR------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQ  133 (375)
T ss_pred             cc------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHH
Confidence            62                        26778888999888888888888888888876655      5543  5677777


Q ss_pred             HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCc
Q 008450          180 ISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGM  259 (565)
Q Consensus       180 ~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (565)
                      .++|.++||.+++++.+..+||+.|++.+++.++..++.++..|+.++++++.+..                        
T Consensus       134 ~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  189 (375)
T TIGR00899       134 ISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALTR------------------------  189 (375)
T ss_pred             HhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccCc------------------------
Confidence            89999999999999999899999999988776655554444333221111000000                        


Q ss_pred             cccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhh
Q 008450          260 LYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVE  339 (565)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (565)
                                    .  +.                        + +..++++........+.............+ .+..
T Consensus       190 --------------~--~~------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  227 (375)
T TIGR00899       190 --------------L--EV------------------------R-GLLASRDTRLLFVACTLMWGCNILYIINMP-LLII  227 (375)
T ss_pred             --------------c--hh------------------------h-hhhcCcchHHHHHHHHHHHHHHHHHHhhhH-HHHH
Confidence                          0  00                        0 000011110000111111111111111111 2222


Q ss_pred             hhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008450          340 QATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLS  419 (565)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~  419 (565)
                      +....+..      ..+..........++...+.+++.||+.+|          +.+.++.++..+.+......      
T Consensus       228 ~~~g~~~~------~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~----------~~~~~~~~~~~~~~~~~~~~------  285 (375)
T TIGR00899       228 HELGLPDK------LAGLMMGTAAGLEIPFMLLAGYLIKRFGKR----------RLMLLAALAGVAFYTGLAAD------  285 (375)
T ss_pred             HHcCCCHH------HHHHHHHHHHHHHHHHHHhHHHHHHHhcch----------hHHHHHHHHHHHHHHHHHHH------
Confidence            11111111      112222233333344445566665554443          22344444444333332221      


Q ss_pred             hhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhccc
Q 008450          420 VARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTG  499 (565)
Q Consensus       420 ~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~  499 (565)
                                   .+.+.++...++.+++.+...+..+.+..|..|++ +++++++++....+|..+++.+.+.+.+.. 
T Consensus       286 -------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-  350 (375)
T TIGR00899       286 -------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERW-  350 (375)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence                         12334455666777877777888888888988875 679999999999999999999999875421 


Q ss_pred             CCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhh
Q 008450          500 SKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLIC  537 (565)
Q Consensus       500 ~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~  537 (565)
                           +          +...|++.+++.+++.++.+.+
T Consensus       351 -----g----------~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       351 -----S----------YHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             -----c----------chhHHHHHHHHHHHHHHHHhee
Confidence                 1          3556778888877777765443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.92  E-value=3.5e-23  Score=219.74  Aligned_cols=372  Identities=13%  Similarity=0.083  Sum_probs=238.9

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchh-----hhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSAT-----SANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG   97 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~   97 (565)
                      ..++..+++....+.++.|.+ ++|.+..+     .+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   99 (408)
T PRK09874         22 GCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALGMGIVMV   99 (408)
T ss_pred             HHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHHHHHHHH
Confidence            556666666666677777764 68888655     48889999999999999999999999 999999999999888888


Q ss_pred             HHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhh
Q 008450           98 MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  177 (565)
Q Consensus        98 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (565)
                      ++++.+                        +++.+++.|++.|++.+ ..+....++.|++|+++      |+++.++..
T Consensus       100 ~~~~~~------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~  148 (408)
T PRK09874        100 LMGLAQ------------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLS  148 (408)
T ss_pred             HHHHHh------------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHH
Confidence            877763                        27779999999999865 56778889999998888      999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCc
Q 008450          178 FFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNV  257 (565)
Q Consensus       178 ~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (565)
                      ...++|.+++|.+++++.+..+|++.|++.+++.++..+..+...++.+  ++..++.....       +          
T Consensus       149 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~----------  209 (408)
T PRK09874        149 TGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF--QPVSKKEMLHM-------R----------  209 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc--ccccchhhhHH-------H----------
Confidence            9999999999999999999899999999888776655444433322211  11000000000       0          


Q ss_pred             CccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhh
Q 008450          258 GMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFS  337 (565)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (565)
                                            +..                      +..++++.........................+
T Consensus       210 ----------------------~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (408)
T PRK09874        210 ----------------------EVV----------------------TSLKNPKLVLSLFVTTLIIQVATGSIAPILTLY  245 (408)
T ss_pred             ----------------------HHH----------------------HhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  000                      000011111111111111000000111111111


Q ss_pred             hhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008450          338 VEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKR  417 (565)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~  417 (565)
                      ..........   .....+.+..+..+..++..+..+++.||+.+|          +.+..+.++..++++...+.    
T Consensus       246 ~~~~~~~~~~---~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~----------~~~~~~~~~~~~~~~~~~~~----  308 (408)
T PRK09874        246 VRELAGNVSN---IAFISGMIASVPGVAALLSAPRLGKLGDRIGPE----------KILITALIFSVLLLIPMSFV----  308 (408)
T ss_pred             HHHHhccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------hhHHHHHHHHHHHHHHHHHh----
Confidence            1110000000   000011222333444455566666776555443          22445555555444443321    


Q ss_pred             hhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhc
Q 008450          418 LSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKV  497 (565)
Q Consensus       418 ~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~  497 (565)
                                     .+.+.+.+..++.+++.+...|...+...+..|++.+|+..++++....+|..+|+.+.+.+.+.
T Consensus       309 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~  373 (408)
T PRK09874        309 ---------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN  373 (408)
T ss_pred             ---------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh
Confidence                           23444556777889999988999999999999999999999999999999999999999987531


Q ss_pred             ccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhh
Q 008450          498 TGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICA  538 (565)
Q Consensus       498 ~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~  538 (565)
                      .                ++...|++.+++.+++.+..+...
T Consensus       374 ~----------------g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        374 Y----------------GFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             c----------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence            1                135678888888888777665543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.92  E-value=1e-22  Score=218.96  Aligned_cols=147  Identities=11%  Similarity=0.038  Sum_probs=132.6

Q ss_pred             HHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 008450           38 LVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETA  117 (565)
Q Consensus        38 l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  117 (565)
                      ..+.+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..+++++++++++             
T Consensus        45 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~-------------  110 (434)
T PRK11663         45 AMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFGFSSS-------------  110 (434)
T ss_pred             hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHHHHhH-------------
Confidence            34455668999999999999999999999999999999999 9999999999999999998888733             


Q ss_pred             cccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccc
Q 008450          118 THTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE  197 (565)
Q Consensus       118 ~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~  197 (565)
                                 ++.+++.|++.|++.|...+....++.|++|+++      |++++++++...++|.++++.+.+++.+.
T Consensus       111 -----------~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  173 (434)
T PRK11663        111 -----------LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALH  173 (434)
T ss_pred             -----------HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                       7778899999999999999999999999999988      99999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHH
Q 008450          198 ISRSVGYGICSVAMFMAI  215 (565)
Q Consensus       198 ~gw~~~f~i~~~~~~~~~  215 (565)
                      +|||+.|++.++..++..
T Consensus       174 ~gw~~~f~~~~i~~~~~~  191 (434)
T PRK11663        174 YGWRYGMMIAGIIAIVVG  191 (434)
T ss_pred             ccHHHHHHHHHHHHHHHH
Confidence            999999998776655443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.92  E-value=1.8e-23  Score=227.27  Aligned_cols=380  Identities=13%  Similarity=0.120  Sum_probs=240.5

Q ss_pred             HHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           33 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      .+.....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++++        
T Consensus        19 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~--------   89 (485)
T TIGR00711        19 TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLCGVAPN--------   89 (485)
T ss_pred             HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHHhCcCC--------
Confidence            4455566777889999999999999999999999999999999999 9999999999999999999988732        


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                                      +..++++|+++|++.+...+...+++.|.+|+++      |+++++++.....+|..+||.+++
T Consensus        90 ----------------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~  147 (485)
T TIGR00711        90 ----------------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGG  147 (485)
T ss_pred             ----------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHh
Confidence                            7779999999999999999999999999999888      999999999999999999999999


Q ss_pred             HhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHH----HHHhccccCCCCcCccccCCcccc
Q 008450          193 YIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVA----AIKKRKMDLPCNVGMLYEDTPEAS  268 (565)
Q Consensus       193 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  268 (565)
                      ++.++++||+.|++.++..+++.++..+..++.++++.  ++.+.....+..    .... .......           .
T Consensus       148 ~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~g~~l~~~~~~~~~~-~~~~~~~-----------~  213 (485)
T TIGR00711       148 WIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAAS--ENFDFLGLLLLSVGLGSLLY-GLSEGPE-----------R  213 (485)
T ss_pred             HhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccccc--CCCcHHHHHHHHHHHHHHHH-HHhhCCC-----------C
Confidence            99999999999998877666555544443332211111  111111110000    0000 0000000           0


Q ss_pred             ccCCC-cchhHHhHHH------HhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhh
Q 008450          269 RIHHT-EQFHFLDKAA------IVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQA  341 (565)
Q Consensus       269 ~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (565)
                      .+... +.......+.      ...+.     ..+.+.  ...+..++++........+.....++...... +.+..+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~  285 (485)
T TIGR00711       214 GWFDSNEILILSITGLVAIIAFVVWEL-----TDDNPL--VDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLL-PLYLQQV  285 (485)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHH-----cCCCCc--cCHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence            00000 0000000000      00000     000111  01111122222222221222222222211111 1222211


Q ss_pred             hcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008450          342 TTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVA  421 (565)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~  421 (565)
                      ...+      ....+.......+..++..++.+++.+|+.+|          +.+.+|.++..++..++.+..       
T Consensus       286 ~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~----------~~~~~g~~~~~~~~~~~~~~~-------  342 (485)
T TIGR00711       286 LGYT------ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR----------KLVTIGLILYAVGFYWRAFTF-------  342 (485)
T ss_pred             cCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH----------HHHHHHHHHHHHHHHHHhccC-------
Confidence            1111      11233444555566667777777776554443          335667777777776654211       


Q ss_pred             hhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 008450          422 RAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKK  496 (565)
Q Consensus       422 ~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~  496 (565)
                              +...+.+......++.++|.+...+.......+..|++.+|+++|+.++.+.+|+.+|+.+.+.+..
T Consensus       343 --------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       343 --------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             --------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    0023444556678889999998888888888889999999999999999999999999999988753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.92  E-value=6.5e-23  Score=222.53  Aligned_cols=156  Identities=13%  Similarity=0.006  Sum_probs=130.5

Q ss_pred             HHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCc
Q 008450           39 VTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT  118 (565)
Q Consensus        39 ~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  118 (565)
                      .+.+.+++|++..+.|++.+.+.+++.++.+++|+++||+ |||+++.+++++.+++..+.++...              
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------  116 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG--------------  116 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh--------------
Confidence            5667789999999999999999999999999999999999 9999999988888877776665310              


Q ss_pred             ccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccc
Q 008450          119 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEI  198 (565)
Q Consensus       119 ~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~  198 (565)
                           ....+.+.+++.|+++|++.+...|....+++|++|+++      |+++++++....++|.++++.+..++.+..
T Consensus       117 -----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~  185 (467)
T PRK09556        117 -----SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYF  185 (467)
T ss_pred             -----cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence                 000248889999999999999999999999999999999      999999999999999999998887766543


Q ss_pred             ---cchhhHHHHHHHHHHHHHHHHh
Q 008450          199 ---SRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       199 ---gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                         +|+..|.+.++..++..++.++
T Consensus       186 ~~~~~~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        186 FDGHVIGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             ccCcchhHHHHHHHHHHHHHHHHHH
Confidence               6999888877665544444333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=1.2e-22  Score=215.73  Aligned_cols=152  Identities=14%  Similarity=0.163  Sum_probs=135.8

Q ss_pred             HHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           33 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      .....+++ +.+++|.++.+.++..+.+.++..+++++.|+++||+ |||+++..+.++.+++.+++++++         
T Consensus        38 ~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~---------  106 (394)
T PRK10213         38 LPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVLLTLSCLLVSFAN---------  106 (394)
T ss_pred             HHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHHHHHHHHHHHC---------
Confidence            33344444 5679999999999999999999999999999999999 999999999999999998888873         


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                                     +++.++++|+++|++.|...|...+++.|++|+++      |+++.++.....++|.++||.+++
T Consensus       107 ---------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~  165 (394)
T PRK10213        107 ---------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGS  165 (394)
T ss_pred             ---------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           37889999999999999999999999999999888      999999999999999999999999


Q ss_pred             HhcccccchhhHHHHHHHHHHHHH
Q 008450          193 YIQDEISRSVGYGICSVAMFMAII  216 (565)
Q Consensus       193 ~l~~~~gw~~~f~i~~~~~~~~~~  216 (565)
                      ++.+.+|||+.|++.+++.+++.+
T Consensus       166 ~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        166 FLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHH
Confidence            999999999999988766554433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.92  E-value=4.3e-23  Score=215.20  Aligned_cols=355  Identities=12%  Similarity=0.042  Sum_probs=230.1

Q ss_pred             HHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 008450           34 IAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC  113 (565)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  113 (565)
                      ..+.+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++++         
T Consensus        21 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~~---------   90 (377)
T TIGR00890        21 TWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIADS---------   90 (377)
T ss_pred             hhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHHH---------
Confidence            345677888999999999999999999999999999999999999 9999999999999999999988843         


Q ss_pred             CCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHH
Q 008450          114 KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVY  193 (565)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~  193 (565)
                                     ++.++++|++.|++.+...+.....+.+++| ++      |+++.++.....++|.++++.+.+.
T Consensus        91 ---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~  148 (377)
T TIGR00890        91 ---------------LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITS  148 (377)
T ss_pred             ---------------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHH
Confidence                           7789999999999999988888888888886 45      8999999999999998877777777


Q ss_pred             hcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCC
Q 008450          194 IQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHT  273 (565)
Q Consensus       194 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (565)
                      +.+..|||+.|++.++..++..+..++..++.++++++++.               +.                    ..
T Consensus       149 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~--------------------~~  193 (377)
T TIGR00890       149 VINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI---------------EV--------------------SV  193 (377)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc---------------cc--------------------ch
Confidence            77778999999988877665544444332211110000000               00                    00


Q ss_pred             cchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhccccccccccc
Q 008450          274 EQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQI  353 (565)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (565)
                      ++.+.   .                      +..++++........+..... ..........+. +....+      ..
T Consensus       194 ~~~~~---~----------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~------~~  240 (377)
T TIGR00890       194 KDYTV---W----------------------EMLRTPQFWVLYLSFFLNAVS-GLLLIGLYKPYG-QSLGLS------DG  240 (377)
T ss_pred             hhhhH---H----------------------HHHcCccHHHHHHHHHHHhHH-HHHHHHHHHHHH-HHcCCC------HH
Confidence            00000   0                      000111111111111111110 000010111111 111111      11


Q ss_pred             CcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcce
Q 008450          354 PAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPV  433 (565)
Q Consensus       354 ~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (565)
                      ..+.+..+..+..++..++.+++.||+.+|          +.+.++.++..++...+.+..                 ..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~----------~~~~~~~~~~~~~~~~~~~~~-----------------~~  293 (377)
T TIGR00890       241 FLVLAVSISSIFNGGGRPFLGALSDKIGRQ----------KTMSIVFGISAVGMAAMLFIP-----------------ML  293 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhHHHHHHHHHHHHHHHcc-----------------cc
Confidence            123344555666667777778887766554          124556666666665544321                 11


Q ss_pred             eehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCcccccccc
Q 008450          434 SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINR  513 (565)
Q Consensus       434 s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~  513 (565)
                      .....+...++.+++.+...+....+..|..|++.|+++.|+.+....+|..+++.+.+.+.+..      +        
T Consensus       294 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~------g--------  359 (377)
T TIGR00890       294 NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI------G--------  359 (377)
T ss_pred             hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh------c--------
Confidence            22223334455666666666777788899999999999999999999999999999999875321      1        


Q ss_pred             chhhHHHHHHHHHHHHHH
Q 008450          514 GRLDLFYGLLAILSIINL  531 (565)
Q Consensus       514 ~~~~~~f~~~a~l~lv~~  531 (565)
                        +...|.+.+++.+++.
T Consensus       360 --~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       360 --FEYTFIVTGAFALTSL  375 (377)
T ss_pred             --hhhHHHHHHHHHHHhc
Confidence              3456677776666654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.92  E-value=3.4e-22  Score=214.72  Aligned_cols=160  Identities=18%  Similarity=0.212  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHhhhcCC---CCchhhhhHHHHH---HHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008450           32 MGIAVNLVTYLVGTMH---LPSATSANIVTDF---MGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKL  105 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~---~s~~~~~~~~~~~---~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~  105 (565)
                      +...+.+.+++.++++   .+..+.+...+.+   .++..++++++|+++||+ ||||++..+.+++.++++++++++++
T Consensus        38 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~  116 (432)
T PRK10406         38 FYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSLVIACLPGY  116 (432)
T ss_pred             HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            4446777788888874   4555444444444   455559999999999999 99999999999999999999987331


Q ss_pred             cccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHH
Q 008450          106 RQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTL  185 (565)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  185 (565)
                      ..                .....+..++++|+++|+|.|+..|...+++.|++|+++      |+++.+..+...+.|.+
T Consensus       117 ~~----------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~  174 (432)
T PRK10406        117 ET----------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQL  174 (432)
T ss_pred             hh----------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHH
Confidence            10                011234579999999999999999999999999999998      99999998888888888


Q ss_pred             HHHHHHHHhc--------ccccchhhHHHHHHHHHHH
Q 008450          186 MAVTVLVYIQ--------DEISRSVGYGICSVAMFMA  214 (565)
Q Consensus       186 lg~~i~g~l~--------~~~gw~~~f~i~~~~~~~~  214 (565)
                      +++.+...+.        ..+|||++|++.++..++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        175 LALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            8877665543        2579999999877665543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.91  E-value=4.6e-22  Score=217.18  Aligned_cols=160  Identities=16%  Similarity=0.138  Sum_probs=125.3

Q ss_pred             hHHHHHHHHHHhhhcCCCCchh-hhhH-----HHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 008450           31 TMGIAVNLVTYLVGTMHLPSAT-SANI-----VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTK  104 (565)
Q Consensus        31 ~~~~~~~l~~yl~~~l~~s~~~-~~~~-----~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~  104 (565)
                      -+++.....+++.++++.+..+ .+++     .++..++..+++++.|+++||+ |||+++.++++++++++++++++++
T Consensus        31 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~i~~~~~a~~~~  109 (490)
T PRK10642         31 DFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAITIVIMSISTFCIGLIPS  109 (490)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHhccc
Confidence            3556667788888888654432 1222     4667788999999999999999 9999999999999999999999844


Q ss_pred             hcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHH
Q 008450          105 LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGT  184 (565)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~  184 (565)
                      +..                .....+.+++++|+++|+|.|+..+....+++|++|+++      |+++.++...+.++|.
T Consensus       110 ~~~----------------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~  167 (490)
T PRK10642        110 YAT----------------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGF  167 (490)
T ss_pred             HHH----------------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHH
Confidence            211                111123458999999999999999999999999999998      9999999888888888


Q ss_pred             HHHHHHHHHhc--------ccccchhhHHHHHHHHHH
Q 008450          185 LMAVTVLVYIQ--------DEISRSVGYGICSVAMFM  213 (565)
Q Consensus       185 ~lg~~i~g~l~--------~~~gw~~~f~i~~~~~~~  213 (565)
                      .+|+.+..++.        ..+|||++|++.++..++
T Consensus       168 ~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        168 VLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             HHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence            88876654432        258999999987655443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.91  E-value=1.4e-21  Score=208.82  Aligned_cols=171  Identities=15%  Similarity=0.116  Sum_probs=148.9

Q ss_pred             CchhhHHHHHHHhHHHHHHHHHH--------hhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHH
Q 008450           19 SKTGIELCERLSTMGIAVNLVTY--------LVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA   90 (565)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~l~~y--------l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~   90 (565)
                      .+..+-+|..+.+++++..++..        +.+++|.+..+.++..+.+.++..++.+++|+++||+ |||+++..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~   89 (413)
T PRK15403         11 HAATLFFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGAL   89 (413)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHH
Confidence            66667788888888877776553        4567899999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhc
Q 008450           91 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  170 (565)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  170 (565)
                      +..+++++++++++                        ++.++++|+++|++.+...+....++.|.+|+++      |+
T Consensus        90 ~~~~~~~~~~~a~~------------------------~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~  139 (413)
T PRK15403         90 IFTLACAATLFTTS------------------------MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GI  139 (413)
T ss_pred             HHHHHHHHHHHcCC------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HH
Confidence            99999999988732                        7789999999999998777777888999999888      99


Q ss_pred             ceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          171 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       171 ~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      ++++++....++|..+||.+++++.+..|||+.|++.++..+++.+..++
T Consensus       140 ~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  189 (413)
T PRK15403        140 KLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL  189 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998899999999988776666554444

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.91  E-value=2.1e-22  Score=215.39  Aligned_cols=146  Identities=14%  Similarity=0.209  Sum_probs=133.6

Q ss_pred             HHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 008450           34 IAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC  113 (565)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  113 (565)
                      ....+.+++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++++         
T Consensus        36 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~---------  105 (426)
T PRK12307         36 LIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYSVGTGLSGLASG---------  105 (426)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHhH---------
Confidence            345566777889999999999999999999999999999999999 9999999999999999999888833         


Q ss_pred             CCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHH
Q 008450          114 KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVY  193 (565)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~  193 (565)
                                     .+.++++|+++|+|.|...+....++.|.+|+++      |+++.++...+.++|.++++.+.+.
T Consensus       106 ---------------~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307        106 ---------------VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             ---------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHH
Confidence                           7789999999999999999999999999999998      9999999999999999999999999


Q ss_pred             hcccccchhhHHHHHHH
Q 008450          194 IQDEISRSVGYGICSVA  210 (565)
Q Consensus       194 l~~~~gw~~~f~i~~~~  210 (565)
                      +.+..+||+.|++..+.
T Consensus       165 l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        165 FAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             HcccCCHHHHHHHHHHH
Confidence            99989999999875443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.91  E-value=2.8e-22  Score=214.01  Aligned_cols=159  Identities=11%  Similarity=0.004  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      ........+.+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+++++.+++++++++++       
T Consensus        24 ~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~-------   95 (412)
T TIGR02332        24 RINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWGIASTATMFATG-------   95 (412)
T ss_pred             hhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence            34445566788999999999999999999999999999999999999 9999999999999999999998733       


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                       ++.++++|+++|++.++..|....++.|++|+++      |+++++++....++|.++++.++
T Consensus        96 -----------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~  152 (412)
T TIGR02332        96 -----------------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILS  152 (412)
T ss_pred             -----------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                             7789999999999999999999999999999988      99999999999999999999999


Q ss_pred             HHhcc------cccchhhHHHHHHHHHHHHHHHHhc
Q 008450          192 VYIQD------EISRSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       192 g~l~~------~~gw~~~f~i~~~~~~~~~~~~~~~  221 (565)
                      +++.+      ..|||+.|++.++..++..++.++.
T Consensus       153 ~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~  188 (412)
T TIGR02332       153 GYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFW  188 (412)
T ss_pred             HHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence            98863      4699999999877665544444433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.91  E-value=1.5e-22  Score=219.36  Aligned_cols=380  Identities=12%  Similarity=0.081  Sum_probs=231.9

Q ss_pred             cCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCC
Q 008450           45 TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQA  124 (565)
Q Consensus        45 ~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  124 (565)
                      +++++..+.|++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+++.++.+ +                  
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-~------------------  129 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-G------------------  129 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH-c------------------
Confidence            6889999999999999999999999999999999 9999999999998888888765422 1                  


Q ss_pred             cchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccc-cchhh
Q 008450          125 SGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEI-SRSVG  203 (565)
Q Consensus       125 ~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~-gw~~~  203 (565)
                         ....+++.|+++|++.+...|....++.|++|+++      |+++.++...+.++|.++++.+++++.+.. |||+.
T Consensus       130 ---~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~  200 (465)
T TIGR00894       130 ---GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI  200 (465)
T ss_pred             ---CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence               25679999999999999999999999999999998      999999999999999999999999999884 99999


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcchhHHhHHH
Q 008450          204 YGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAA  283 (565)
Q Consensus       204 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (565)
                      |++.++..++..++.+...++.+++++..++.+.  +.    .++ ..+  +.                           
T Consensus       201 f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~----i~~-~~~--~~---------------------------  244 (465)
T TIGR00894       201 FYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK--KY----INS-SLQ--GQ---------------------------  244 (465)
T ss_pred             hhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH--HH----HHh-hcc--cc---------------------------
Confidence            9998877665554444433322211111111100  00    000 000  00                           


Q ss_pred             HhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccccCcchhhhhhh
Q 008450          284 IVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFV  363 (565)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (565)
                          .  .+.+.+.+|+    +..+++......+..+.....++....+++. +..+..+.+      ....+....+..
T Consensus       245 ----~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-~l~~~~g~s------~~~~g~~~~~~~  307 (465)
T TIGR00894       245 ----K--GSTRQSLPIK----AIPKSLPVWAIWFAIFGHFWLYTILPTYLPT-FISWVLRVS------GKENGLLSSLPY  307 (465)
T ss_pred             ----c--CCCCCCCCHH----HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCcC------hHHhHHHHHHHH
Confidence                0  0000001110    0111111111111112222222222222222 222222222      112345556667


Q ss_pred             HHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHH
Q 008450          364 SAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFF  443 (565)
Q Consensus       364 ~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~  443 (565)
                      +..++...+.+++.|++.+|...+  ....+++..+..+...+...+.....                ..+....++.+.
T Consensus       308 ~~~~i~~~~~g~l~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~  369 (465)
T TIGR00894       308 LFAWLCSIFAGYLADFLKSSKTLS--LTAARKIFNGIGGLGPGIFAYALPYL----------------SAAFYLTIIILT  369 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHc----------------CCchHHHHHHHH
Confidence            777788888888888776542211  11111122222211111111111100                112233334444


Q ss_pred             HHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHH
Q 008450          444 LVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLL  523 (565)
Q Consensus       444 l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~  523 (565)
                      +.+.+.....+..+....+..|+ .+|+.+|+.++...+|+.+++.+.+.+.+..      +|       +.+...|.+.
T Consensus       370 l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~------~~-------~~~~~~f~~~  435 (465)
T TIGR00894       370 LANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQD------SK-------NVWLIVFLIM  435 (465)
T ss_pred             HHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCC------Cc-------hHHHHHHHHH
Confidence            44455555556666667777776 7999999999999999999999988764211      01       2246678888


Q ss_pred             HHHHHHHHHHHhhhh
Q 008450          524 AILSIINLVIYLICA  538 (565)
Q Consensus       524 a~l~lv~~~~~~~~~  538 (565)
                      +++.+++.+++....
T Consensus       436 ~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       436 AFVNILCVIFYLIFG  450 (465)
T ss_pred             HHHHHHHHHHeeeee
Confidence            888888877766543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.91  E-value=5.7e-22  Score=213.23  Aligned_cols=409  Identities=12%  Similarity=0.140  Sum_probs=233.3

Q ss_pred             HHhhhcCCCC--------chhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           40 TYLVGTMHLP--------SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        40 ~yl~~~l~~s--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      +.+..+++.+        ..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.+..+.      
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~------  124 (481)
T TIGR00879        52 ALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA------  124 (481)
T ss_pred             hcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc------
Confidence            3444455555        89999999999999999999999999999 99999999999999999988775321      


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                     .+.+.++++|+++|+|.+...+....+++|++|+++      |++++++.+...++|.++++.++
T Consensus       125 ---------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       125 ---------------LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             ---------------cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHH
Confidence                           235689999999999999999999999999999998      99999999999999999999998


Q ss_pred             ---HHhcccccchhhHHHHHHHHHHHHHHHHhcccccccc-CCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccc
Q 008450          192 ---VYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYK-KSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEA  267 (565)
Q Consensus       192 ---g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (565)
                         +.+.+..+||+.|++.++..++.++..++. ++.+.. ..++ +.++..+.... .+  +...++.  ..       
T Consensus       184 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l-~~~~~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~--~~-------  249 (481)
T TIGR00879       184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFL-PESPRWLVGKG-RVEEARKSLAR-LR--GTSGEDK--EL-------  249 (481)
T ss_pred             HHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHcC-ChHHHHHHHHH-Hh--CCCCCcH--HH-------
Confidence               777777899999999666555444443333 221110 0011 11111000000 00  0000000  00       


Q ss_pred             cccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhH-HHhHHH-HHHHHHHHHhhhcccchh--hhhhhhc
Q 008450          268 SRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKM-VARLLP-IWATTIIFWTTYAQMITF--SVEQATT  343 (565)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~  343 (565)
                           .......+.... .+..    ..+..|..    .....+. ...... ..................  +..+...
T Consensus       250 -----~~~~~~~~~~~~-~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  315 (481)
T TIGR00879       250 -----LDELELIDIKRS-IEKR----SVQPSWGS----LFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAG  315 (481)
T ss_pred             -----HHHHHHHHHHHH-HHHh----hccccHHH----HHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcC
Confidence                 000000000000 0000    00000100    0000000 000000 111111111111111111  1111111


Q ss_pred             ccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008450          344 MERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARA  423 (565)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~  423 (565)
                      .+      ............+..++...+.+++.|++.+|          +.+.++.++..+++.++.+......+    
T Consensus       316 ~~------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~----  375 (481)
T TIGR00879       316 VS------TDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR----------PLLLIGAAGMAICLFVLGILGASFVT----  375 (481)
T ss_pred             CC------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHHHHHhhcccC----
Confidence            11      11123344445555566666777776665554          23556667777776666532110000    


Q ss_pred             cCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCC
Q 008450          424 VGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGG  503 (565)
Q Consensus       424 ~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~  503 (565)
                          +.+...+..++....++.+.......+....+..|..|++.|++++|+.+++..+|.++++.+.+.+....     
T Consensus       376 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-----  446 (481)
T TIGR00879       376 ----GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-----  446 (481)
T ss_pred             ----CcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence                00000122222222222222222334666778899999999999999999999999999999988775321     


Q ss_pred             CCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 008450          504 GGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPK  544 (565)
Q Consensus       504 ~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~  544 (565)
                       +          +...|++.+++++++.++.++..++.+++
T Consensus       447 -~----------~~~~f~~~~~~~~~~~i~~~~~~~~~~~~  476 (481)
T TIGR00879       447 -G----------VGGVFIFFGGLNVLGLIFVYFFLPETKGR  476 (481)
T ss_pred             -C----------ccceehhHHHHHHHHHHHHheecccCCCC
Confidence             1          24567888888888888777766665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.91  E-value=5.5e-22  Score=209.56  Aligned_cols=164  Identities=10%  Similarity=0.139  Sum_probs=140.2

Q ss_pred             HHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 008450           25 LCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTK  104 (565)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~  104 (565)
                      ++.....+...+.+ +.+.+++|.+..+.+++.+.+.+++.+++++.|+++||+ |||+++.++.++.+++.++++++++
T Consensus        13 ~~~~~~~~~~~~~l-~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~l~~~~~~   90 (382)
T PRK10091         13 FGLGMAEFGIMGVL-TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIGNAMFTLSSS   90 (382)
T ss_pred             HHHHhhHHHHHhCh-HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHHHHHHHhCc
Confidence            33434444444444 456789999999999999999999999999999999999 9999999999999999999988833


Q ss_pred             hcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHH
Q 008450          105 LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGT  184 (565)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~  184 (565)
                                              ++.+++.|++.|++.+...+....++.|++|+++      |+++++......++|.
T Consensus        91 ------------------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~  140 (382)
T PRK10091         91 ------------------------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVAN  140 (382)
T ss_pred             ------------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHH
Confidence                                    7889999999999999988888899999998887      9999999999999999


Q ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          185 LMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       185 ~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      .+||.+++++.+..+||+.|++.++..++..+..+.
T Consensus       141 ~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091        141 LLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             HHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999899999999988766555444333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.91  E-value=1.7e-21  Score=204.66  Aligned_cols=331  Identities=16%  Similarity=0.140  Sum_probs=217.1

Q ss_pred             HHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 008450           38 LVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETA  117 (565)
Q Consensus        38 l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  117 (565)
                      ..+++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++++             
T Consensus        27 ~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~-------------   92 (385)
T TIGR00710        27 AFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFALSSLGLALSNN-------------   92 (385)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence            34556789999999999999999999999999999999999 9999999999999999998887732             


Q ss_pred             cccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccc
Q 008450          118 THTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE  197 (565)
Q Consensus       118 ~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~  197 (565)
                                 .+.++++|++.|++.+...+...+++.|.+|+++      |++++++.+...++|..+|+.+++++.+.
T Consensus        93 -----------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  155 (385)
T TIGR00710        93 -----------IETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVW  155 (385)
T ss_pred             -----------HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       7779999999999999999999999999999888      99999999999999999999999999998


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcchh
Q 008450          198 ISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFH  277 (565)
Q Consensus       198 ~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (565)
                      .+||+.|++.++..++..+..+...++.++++. +++..+..+..                                   
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------------------------------  199 (385)
T TIGR00710       156 LSWHAIFAFLSLAGILLSALIFFILPETLPYEA-RIQISTYFETF-----------------------------------  199 (385)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc-cCCHHHHHHHH-----------------------------------
Confidence            999999998877666555444443332111100 00000000000                                   


Q ss_pred             HHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccccCcch
Q 008450          278 FLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGS  357 (565)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (565)
                          .                      ...++++................. +....+.+..+....+      ....+.
T Consensus       200 ----~----------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~------~~~~g~  246 (385)
T TIGR00710       200 ----L----------------------LLLKSKMFWGYALIYGASFGGFFA-FFSGAPFVYIDIMGVS------PSVFGL  246 (385)
T ss_pred             ----H----------------------HHHcCchhHHHHHHHHHHHHHHHH-HHHcChHHHHHHcCCC------HHHHHH
Confidence                0                      000111111111111111111111 1111112222111111      111233


Q ss_pred             hhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehh
Q 008450          358 LTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFL  437 (565)
Q Consensus       358 ~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  437 (565)
                      +.....+..++..++.+++.+++.+|          +.+..+.++..++..++......              ...+...
T Consensus       247 ~~~~~~~~~~~~~~~~g~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~  302 (385)
T TIGR00710       247 LFALNIIAMIFGGFLNGRFIKKWGAK----------SLLRMGLILFAVSAVLLEITAIL--------------GLGSWAM  302 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHHHHHHHHHh--------------ccchHHH
Confidence            44455566667777777776655443          23455666666665554433210              0122334


Q ss_pred             hHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhh
Q 008450          438 LIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAV  493 (565)
Q Consensus       438 li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~  493 (565)
                      ++...++.+++.....+.......|..| +.+++++++.+.....++.+.+.+.+.
T Consensus       303 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~  357 (385)
T TIGR00710       303 IIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSL  357 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556677888888888888888888887 569999999998887655555555553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.5e-22  Score=217.07  Aligned_cols=379  Identities=17%  Similarity=0.206  Sum_probs=254.1

Q ss_pred             hcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccC
Q 008450           44 GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQ  123 (565)
Q Consensus        44 ~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  123 (565)
                      .+++++..|.+++.+++..|+.++..++|+++||+ |-|+++..+.++.++++++..++.+.                  
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~------------------  126 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASI------------------  126 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence            35788999999999999999999999999999999 99999999999999999999998652                  


Q ss_pred             CcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccc-ccchh
Q 008450          124 ASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE-ISRSV  202 (565)
Q Consensus       124 ~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~-~gw~~  202 (565)
                          .++.+++.|+++|++.|...|+...+.+.+.|++|      |+++.++...+..+|.+++.++.|++.+. .||+.
T Consensus       127 ----~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s  196 (466)
T KOG2532|consen  127 ----GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS  196 (466)
T ss_pred             ----cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence                34578999999999999999999999999999999      99999999999999999999999999998 99999


Q ss_pred             hHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcchhHHhHH
Q 008450          203 GYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKA  282 (565)
Q Consensus       203 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (565)
                      +|++.+++.++..++++......+.++|.-++.+                                       .+.+++.
T Consensus       197 ifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~E---------------------------------------l~~I~~~  237 (466)
T KOG2532|consen  197 IFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKE---------------------------------------LKYIEKG  237 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHH---------------------------------------HHHHHhc
Confidence            9999998877766665554332222222111100                                       0000000


Q ss_pred             HHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccccCcchhhhhh
Q 008450          283 AIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFF  362 (565)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (565)
                         +.........+.||           |.++.-.++++.....+.-...+..+..+.+.++...++-....++++.+++
T Consensus       238 ---k~~~~~~~~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP  303 (466)
T KOG2532|consen  238 ---KSEAHVKKKPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALP  303 (466)
T ss_pred             ---ccccccCCCCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHH
Confidence               00000000012333           3333333444443333333332222233333333323222233678888999


Q ss_pred             hHHHHHHHHHhhhhhhhccccccCCCCCCchhHH--HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHH
Q 008450          363 VSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRM--AIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIP  440 (565)
Q Consensus       363 ~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l--~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  440 (565)
                      .+...+...+.+.+.|++.+| .-  .....+++  .++....++.++.+++..                  ....+..+
T Consensus       304 ~l~~~~~k~~~g~lsD~l~~~-~l--s~t~~rkifn~i~~~~~ai~l~~l~~~~------------------~~~~~~a~  362 (466)
T KOG2532|consen  304 FLAMAIVKFVAGQLSDRLTFR-IL--SETTVRKIFNTIAFGGPAVFLLVLAFTS------------------DEHRLLAV  362 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc-cC--chHhHHHHHHhHHHHHHHHHHHeeeecC------------------CCcchHHH
Confidence            999999999999999988886 22  23333444  445555555555555541                  11112222


Q ss_pred             HHHHHHHHHHHhh-hhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHH
Q 008450          441 QFFLVGAGEAFIY-TGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLF  519 (565)
Q Consensus       441 ~~~l~g~g~~~~~-~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~  519 (565)
                      .....+.+..... +..+.-..+.+| +..+..+|+.+++..+..+++|.+.+.+-.   ++...+|          ..+
T Consensus       363 ~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~---~~t~~eW----------~~V  428 (466)
T KOG2532|consen  363 ILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT---DNTREEW----------RIV  428 (466)
T ss_pred             HHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC---CCCHHHH----------HHH
Confidence            2222223333333 333333333355 669999999999999999999999998742   1122334          788


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 008450          520 YGLLAILSIINLVIYLICAV  539 (565)
Q Consensus       520 f~~~a~l~lv~~~~~~~~~~  539 (565)
                      |.+.+++.+++.+++.++..
T Consensus       429 F~i~a~i~~~~~i~f~~f~s  448 (466)
T KOG2532|consen  429 FLIAAGILIVGNIIFLFFGS  448 (466)
T ss_pred             HHHHHHHHHHhchheeEeec
Confidence            99999999999988877753

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.91  E-value=7.3e-22  Score=208.59  Aligned_cols=161  Identities=14%  Similarity=0.208  Sum_probs=138.3

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      .+++..+..+ +.....+.+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.++++++++++
T Consensus        20 ~~~~~~~~~~-~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~   97 (405)
T TIGR00891        20 GWLLDAFDFF-LVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVLFSAGTLACGFA   97 (405)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444333 445555677889999999999999999999999999999999999 99999999999999999888877


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      .+                        ++.++++|++.|++.+...+...+++.|++|+++      |+++.++.....++
T Consensus        98 ~~------------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~  147 (405)
T TIGR00891        98 PG------------------------YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAV  147 (405)
T ss_pred             cc------------------------HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHH
Confidence            32                        7779999999999999999999999999999988      99999999999999


Q ss_pred             HHHHHHHHHHHhccccc--chhhHHHHHHHHHHHH
Q 008450          183 GTLMAVTVLVYIQDEIS--RSVGYGICSVAMFMAI  215 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~g--w~~~f~i~~~~~~~~~  215 (565)
                      |.++++.+++.+.+..+  ||+.|.+.++..++.+
T Consensus       148 g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       148 GAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            99999999998887766  9999987665544433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.90  E-value=3.2e-21  Score=211.18  Aligned_cols=149  Identities=18%  Similarity=0.206  Sum_probs=123.6

Q ss_pred             CCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcc
Q 008450           47 HLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASG  126 (565)
Q Consensus        47 ~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (565)
                      +.++.+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++++++.+.                  ...
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~------------------~~~  112 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGS------------------SPK  112 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCc------------------ccc
Confidence            45667789999999999999999999999999 99999999999999999888876210                  001


Q ss_pred             hhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcc----------
Q 008450          127 FQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD----------  196 (565)
Q Consensus       127 ~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~----------  196 (565)
                      .++..++++|+++|++.|+..+..+.+++|.+|+++      |+++.++.+....+|.++++.++.++..          
T Consensus       113 ~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~  186 (502)
T TIGR00887       113 SVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAA  186 (502)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            236789999999999999999999999999999999      9999999999999999999888765431          


Q ss_pred             -------------cccchhhHHHHHHHHHHHHHHHHh
Q 008450          197 -------------EISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       197 -------------~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                                   .++||+.|.+.++..++..+..++
T Consensus       187 ~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~  223 (502)
T TIGR00887       187 DEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT  223 (502)
T ss_pred             ccccccccccchhcccHHHHHHHHHHHHHHHHHHHHh
Confidence                         247999998777666555444333

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.90  E-value=1.9e-21  Score=200.32  Aligned_cols=344  Identities=20%  Similarity=0.286  Sum_probs=254.6

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++..+.+.......+.|. +++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++..+..++.++....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~~~~   84 (352)
T cd06174           7 GFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLLAFA   84 (352)
T ss_pred             HHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHHHHh
Confidence            45666666666666666665 57799999999999999999999999999999999 99999999999999999988877


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      +                        +.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.+...++
T Consensus        85 ~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  134 (352)
T cd06174          85 S------------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGL  134 (352)
T ss_pred             c------------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHH
Confidence            2                        27789999999999999999999999999999988      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYE  262 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (565)
                      |..++|.+++.+.+..+|++.|++.++..++..+......+             .                         
T Consensus       135 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-------------------------  176 (352)
T cd06174         135 GALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR-------------L-------------------------  176 (352)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------------H-------------------------
Confidence            99999999999999889999999887776655544333210             0                         


Q ss_pred             CCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhh
Q 008450          263 DTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQAT  342 (565)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (565)
                                                                       ............... ..+....+.+..+..
T Consensus       177 -------------------------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  206 (352)
T cd06174         177 -------------------------------------------------LLLLALAFFLLSFGY-YGLLTYLPLYLQEVL  206 (352)
T ss_pred             -------------------------------------------------HHHHHHHHHHHHhHH-HHHHHHHHHHHHHhc
Confidence                                                             000000001111111 111111111111110


Q ss_pred             cccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008450          343 TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVAR  422 (565)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~  422 (565)
                      +.+      ....+.......+..++..++.+++.+|..+|.         ..+..+.++..++.......         
T Consensus       207 ~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~---------  262 (352)
T cd06174         207 GLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR---------LLLLIGLLLAALGLLLLALA---------  262 (352)
T ss_pred             CCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHh---------
Confidence            111      112344555666777777777777766655541         03677777777777766542         


Q ss_pred             hcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCC
Q 008450          423 AVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKG  502 (565)
Q Consensus       423 ~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~  502 (565)
                                .+.+...+..++.+++.+...+...++..|..|++.|++.+|+.+....+|..+++.+.+.+.+.     
T Consensus       263 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-----  327 (352)
T cd06174         263 ----------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-----  327 (352)
T ss_pred             ----------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence                      23556777889999999999999999999999999999999999999999999999999987531     


Q ss_pred             CCCccccccccchhhHHHHHHHHHHHHHHHHHhh
Q 008450          503 GGGWLADNINRGRLDLFYGLLAILSIINLVIYLI  536 (565)
Q Consensus       503 ~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~  536 (565)
                       .+          +...+.+.+++.+++.+..+.
T Consensus       328 -~~----------~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         328 -GG----------YGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             -cC----------cchHHHHHHHHHHHHHHHhee
Confidence             12          345677888888877766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.90  E-value=2e-21  Score=206.23  Aligned_cols=157  Identities=14%  Similarity=0.210  Sum_probs=131.2

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      .+++..++.......++. +.+++|.++.+.+++.+.+.+.+.+..+++|+++||+ ||||+++++.++.++++++++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~~~~~~~   88 (393)
T PRK11195         11 AQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGCLLMLFG   88 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHHHHHHHH
Confidence            455655554444444444 4678999999999999999999999999999999999 99999999999999988887665


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      .+                           .++.|+++|++.+...|+..+++.|++|+++      |+++.++.....++
T Consensus        89 ~~---------------------------~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~  135 (393)
T PRK11195         89 IH---------------------------PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIA  135 (393)
T ss_pred             HH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHH
Confidence            21                           2678999999999999999999999999988      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAI  215 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~  215 (565)
                      |.++||.++|++.+. .|+..+.+.+.+.+++.
T Consensus       136 ~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~  167 (393)
T PRK11195        136 AILLGTVLGGALADP-HAEAALAVCALIYLLAA  167 (393)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            999999999999874 47777776655544443

>TIGR00898 2A0119 cation transport protein

Probab=99.90  E-value=6.5e-22  Score=216.54  Aligned_cols=388  Identities=18%  Similarity=0.148  Sum_probs=233.4

Q ss_pred             HHHhhhcCCCC---chhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008450           39 VTYLVGTMHLP---SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE  115 (565)
Q Consensus        39 ~~yl~~~l~~s---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  115 (565)
                      .+.+.+++|++   ..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.+++.+           
T Consensus       112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~~-----------  179 (505)
T TIGR00898       112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSPN-----------  179 (505)
T ss_pred             cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHccc-----------
Confidence            34567789998   89999999999999999999999999999 9999999999999999998888732           


Q ss_pred             CCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhc
Q 008450          116 TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  195 (565)
Q Consensus       116 ~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~  195 (565)
                                   ++.++++|++.|++.++..+....++.|++|+++      |+++.++......+|.++++.+++++.
T Consensus       180 -------------~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~  240 (505)
T TIGR00898       180 -------------YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIP  240 (505)
T ss_pred             -------------HHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                         7889999999999999999999999999999998      999999998889999999998877664


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcc
Q 008450          196 DEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQ  275 (565)
Q Consensus       196 ~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (565)
                      +   ||+.|++.++..++..+..++.++..+....++ ..++..+.+....+..+...+..   ...          .+ 
T Consensus       241 ~---wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~---~~~----------~~-  302 (505)
T TIGR00898       241 D---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQG-RIEEALKILQRIAKINGKKLPAE---VLS----------LS-  302 (505)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCC-CHHHHHHHHHHHHHHcCCCCCHH---HHh----------hh-
Confidence            3   999999888776655555443321110000111 11222222222222211110000   000          00 


Q ss_pred             hhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccccCc
Q 008450          276 FHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPA  355 (565)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (565)
                         .+.     +...  ......+    .+..++++........+.........+...  .+     ..+ ..   ....
T Consensus       303 ---~~~-----~~~~--~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~-~~---~~~~  357 (505)
T TIGR00898       303 ---LEK-----DLSS--SKKQYSF----LDLFRTPNLRKTTLCLMMLWFTTAFSYYGL--VL-----DLG-NL---GGNI  357 (505)
T ss_pred             ---hhh-----hhhh--ccCCCcH----HHHhCChHHHHHHHHHHHHHHHHHHHHHHH--hc-----ccc-cc---CCCh
Confidence               000     0000  0000000    000111111111111111111110110000  00     000 00   1111


Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceee
Q 008450          356 GSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSV  435 (565)
Q Consensus       356 ~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  435 (565)
                      .....+..+..+....+...+.|++.||          ..+.++.++.+++.+.+.+..                 ....
T Consensus       358 ~~~~~~~~~~~i~~~~~~~~l~dr~grr----------~~~~~~~~~~~~~~l~~~~~~-----------------~~~~  410 (505)
T TIGR00898       358 YLDLFISGLVELPAKLITLLLIDRLGRR----------YTMAASLLLAGVALLLLLFVP-----------------VDLY  410 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHHHHHcC-----------------CCch
Confidence            1222233334444455556666655554          235666666666666554431                 1122


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccch
Q 008450          436 FLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGR  515 (565)
Q Consensus       436 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~  515 (565)
                      ++.+...++.+++....++..+.+..|.+|++.|++++|+.++...+|++++|.+.+ +...                 +
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~-----------------~  472 (505)
T TIGR00898       411 FLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK-----------------W  472 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-----------------H
Confidence            334445556667777778888999999999999999999999999999999999887 4211                 1


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhcCCCCC
Q 008450          516 LDLFYGLLAILSIINLVIYLICAVWYKPKKP  546 (565)
Q Consensus       516 ~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~~  546 (565)
                      ....+++++++.+++.++.++ .+|+++++.
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~~-lpet~~~~l  502 (505)
T TIGR00898       473 LFLPLVLFGGLALLAGILTLF-LPETKGVPL  502 (505)
T ss_pred             HhhHHHHHHHHHHHHHHHHHc-CcCCCCCCC
Confidence            133466677777766655443 456555443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.90  E-value=5.8e-22  Score=214.36  Aligned_cols=374  Identities=9%  Similarity=0.010  Sum_probs=225.0

Q ss_pred             HHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 008450           38 LVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETA  117 (565)
Q Consensus        38 l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  117 (565)
                      ..+.+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..+++++++++++             
T Consensus        41 ~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------  106 (455)
T TIGR00892        41 FFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSSN-------------  106 (455)
T ss_pred             hHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhhh-------------
Confidence            34556789999999999999999999999999999999999 9999999999999999999888733             


Q ss_pred             cccccCCcchhHHHHH-HHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcc
Q 008450          118 THTCEQASGFQMGVLY-IALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  196 (565)
Q Consensus       118 ~~~~~~~~~~~~~~l~-i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~  196 (565)
                                 .+.++ ..|++.|++.+...+....++.++++ ++      |+++.++.+...++|..++|.+++++.+
T Consensus       107 -----------~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~  168 (455)
T TIGR00892       107 -----------VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFE  168 (455)
T ss_pred             -----------HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence                       44454 45788999999877777788889885 55      9999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcch
Q 008450          197 EISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQF  276 (565)
Q Consensus       197 ~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (565)
                      .+|||++|++.+++.+++.+..++..+..+.++...++..           . .. .+.            .........
T Consensus       169 ~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----------~-~~-~~~------------~~~~~~~~~  223 (455)
T TIGR00892       169 SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK-----------E-GL-PPD------------GSTKKLSKK  223 (455)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc-----------c-cC-CCC------------Ccccccccc
Confidence            9999999999887766555444443322111000000000           0 00 000            000000000


Q ss_pred             hHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccccCcc
Q 008450          277 HFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAG  356 (565)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (565)
                      ...+              ...++.  ..+..++++........+.....+......++ .+..+ ...+      ....+
T Consensus       224 ~~~~--------------~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~~-~g~s------~~~~g  279 (455)
T TIGR00892       224 STAE--------------KINRFL--DFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLV-PYAKD-KGVD------EYEAA  279 (455)
T ss_pred             chhh--------------hhhhhc--chHHhcCchHHHHHHHHHHHHHHccchHHHHH-HHHHH-cCCC------HHHHH
Confidence            0000              000000  00011111111111111111111111111111 11111 1111      11223


Q ss_pred             hhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeeh
Q 008450          357 SLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVF  436 (565)
Q Consensus       357 ~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  436 (565)
                      .+..+..+..++..++.+++.|+...+      ......+..+.++..+++++...                   ..+.+
T Consensus       280 ~~~~~~~~~~~~~~~~~g~l~d~~~~~------~~~~~~~~~~~~~~~l~~ll~~~-------------------~~~~~  334 (455)
T TIGR00892       280 FLLSIIGFVDIFARPSCGLIAGLKWIR------PHVQYLFSFALLFNGLTHLLCAL-------------------AGDYT  334 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccC------HHHHHHHHHHHHHHHHHHHHHHH-------------------hchHH
Confidence            344445555566666666665531111      01111222333333333333222                   12345


Q ss_pred             hhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchh
Q 008450          437 LLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRL  516 (565)
Q Consensus       437 ~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~  516 (565)
                      ++++..++.|++.+...+..++++.|.+|++.+|++.|+++....+|..+|+.+.+.+.+..               +++
T Consensus       335 ~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~---------------g~~  399 (455)
T TIGR00892       335 GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT---------------KNY  399 (455)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc---------------CCc
Confidence            56667788888888888999999999999999999999999999999999999998775321               113


Q ss_pred             hHHHHHHHHHHHHHHH
Q 008450          517 DLFYGLLAILSIINLV  532 (565)
Q Consensus       517 ~~~f~~~a~l~lv~~~  532 (565)
                      ...|++.+++.+++.+
T Consensus       400 ~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       400 KYIFYASGSIVVSAGL  415 (455)
T ss_pred             chHHHHhhHHHHHHHH
Confidence            4556666666666554

>TIGR00897 2A0118 polyol permease family

Probab=99.90  E-value=5.6e-21  Score=203.28  Aligned_cols=395  Identities=12%  Similarity=0.021  Sum_probs=238.1

Q ss_pred             CcccccCCCCCCCchh-hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHH
Q 008450            7 DAVDYKGSPADPSKTG-IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTI   85 (565)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~   85 (565)
                      ||.+--|.|+...... .+++..++.+....++++++ +++|.+..+.+++.+.+.++..++.++.|+++||+ ||||++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l   81 (402)
T TIGR00897         4 NNLQKIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTM   81 (402)
T ss_pred             ccHHHcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHH
Confidence            5556566555444433 66777777676777888887 57899999999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHh
Q 008450           86 AIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKE  165 (565)
Q Consensus        86 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  165 (565)
                      ..+..+..++.+++..... ..                   .+.+.+++.|++.|+|.+...+...+.+.+.+|+++   
T Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~-------------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~---  138 (402)
T TIGR00897        82 MIGLLLWCVGHAAFIVFGL-GH-------------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN---  138 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhc-cC-------------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH---
Confidence            9999999888776543211 00                   136778899999999998888888888999999888   


Q ss_pred             hhhhcceeehhhHHHHHHH-HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHH
Q 008450          166 KTQMAYFFSRFFFFISLGT-LMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVA  244 (565)
Q Consensus       166 ~~~r~~~~~~~~~~~~lg~-~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (565)
                         |++++++.....++|. ++||.+++++.+.+||+..++......+++.++..+..++. + +|+..+.++       
T Consensus       139 ---~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~-------  206 (402)
T TIGR00897       139 ---LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDI-F-TPQHMQTRE-------  206 (402)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCC-C-CcccccCCc-------
Confidence               9999999999999996 68999999999888977666654433333333333322211 0 111000000       


Q ss_pred             HHHhccccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHH
Q 008450          245 AIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTI  324 (565)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (565)
                                 +               ..+   ..+.-                     ....++++........+....
T Consensus       207 -----------~---------------~~~---~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~  236 (402)
T TIGR00897       207 -----------K---------------FSE---LGKAA---------------------TILFTNPNVLLGGMVRIINTI  236 (402)
T ss_pred             -----------c---------------hhh---HHHHH---------------------HHHHcChhHHHHHHHHHHHHH
Confidence                       0               000   00000                     000111111111111111111


Q ss_pred             HHHhhhcccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHH
Q 008450          325 IFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSI  404 (565)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~  404 (565)
                      ..+....+.+ .+... ...+.      ...+.+.....+..++..++.+++.||+.+|..       .  +..+.+...
T Consensus       237 ~~~~~~~~~p-~~~~~-~g~s~------~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~-------~--~~~~~l~~~  299 (402)
T TIGR00897       237 GLFGFAVFLP-MFVAE-LGFST------SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT-------V--RWFGGVGCG  299 (402)
T ss_pred             HHHHHHHHHH-HHHHH-cCCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-------H--HHHHHHHHH
Confidence            1111111121 22211 11111      112233344455666777777888776654411       1  122222222


Q ss_pred             HHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHH
Q 008450          405 VGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGF  484 (565)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~  484 (565)
                      ++...+......              ...+.+..++..++.+++.....+. .....+..| +.||++.|+.+....+|+
T Consensus       300 ~~~~~l~~~~~~--------------~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~  363 (402)
T TIGR00897       300 IFTLALYYIPQH--------------FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSA  363 (402)
T ss_pred             HHHHHHHHHHHc--------------cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHH
Confidence            222222211100              0123344556677777777665443 455566655 579999999999999999


Q ss_pred             HHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhh
Q 008450          485 FVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLIC  537 (565)
Q Consensus       485 ~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~  537 (565)
                      .++|.+.+.+.+..      +          +...|++.+++.+++.++..+.
T Consensus       364 ~~gp~i~g~l~~~~------g----------~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       364 FLAPAIAVLFIGFF------G----------AIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHhhc------c----------hHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999886432      1          3456778888877777665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.90  E-value=4e-21  Score=207.61  Aligned_cols=157  Identities=11%  Similarity=0.031  Sum_probs=128.0

Q ss_pred             HHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008450           36 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE  115 (565)
Q Consensus        36 ~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  115 (565)
                      +...+|+.++ |++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.++++++....         
T Consensus        49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~~---------  117 (452)
T PRK11273         49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT---------  117 (452)
T ss_pred             HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhccc---------
Confidence            3456788877 99999999999999999999999999999999 999999999999999988887762100         


Q ss_pred             CCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHH-HHHHHHHHHh
Q 008450          116 TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGT-LMAVTVLVYI  194 (565)
Q Consensus       116 ~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~-~lg~~i~g~l  194 (565)
                                 .+...+++.|++.|++.|...|.....+.|++|+++      |++++++++...++|. +.+|+++..+
T Consensus       118 -----------~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~  180 (452)
T PRK11273        118 -----------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGM  180 (452)
T ss_pred             -----------ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence                       136778899999999999998988899999999888      9999999999988886 4566554444


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHh
Q 008450          195 QDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       195 ~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      ....+||+.|++.+++.++..++.+.
T Consensus       181 ~~~~gw~~~f~i~~~~~~~~~~l~~~  206 (452)
T PRK11273        181 AWFNDWHAALYMPAFAAILVALFAFA  206 (452)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            34459999999987766554444333

>PRK09952 shikimate transporter; Provisional

Probab=99.90  E-value=5.2e-21  Score=205.93  Aligned_cols=369  Identities=10%  Similarity=0.129  Sum_probs=212.2

Q ss_pred             HHhhhcC--CCCchhhhhHH-----HHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           40 TYLVGTM--HLPSATSANIV-----TDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        40 ~yl~~~l--~~s~~~~~~~~-----~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      .++.+++  +.++. .+++.     +...++..+++++.|+++||+ |||+++.++.++++++++++++++++..     
T Consensus        47 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~-----  119 (438)
T PRK09952         47 LVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLMLTVWMMGIATALIGLLPSFST-----  119 (438)
T ss_pred             HHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHhcCCcHHH-----
Confidence            3455554  56665 35543     234456778889999999999 9999999999999999999999844221     


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                                 .....+..++++|+++|++.|+..|....++.|++|+++      |++..+....+..+|.+++..+..
T Consensus       120 -----------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~  182 (438)
T PRK09952        120 -----------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVS  182 (438)
T ss_pred             -----------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence                       001123368899999999999999999999999999998      999999888888888888877766


Q ss_pred             Hhc--------ccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCC
Q 008450          193 YIQ--------DEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDT  264 (565)
Q Consensus       193 ~l~--------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (565)
                      ++.        ..+|||++|++.++..++++.+    +... ++.|+   ..+        .+.+..+ . +        
T Consensus       183 ~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l----~~~~-~es~~---~~~--------~~~~~~~-~-~--------  236 (438)
T PRK09952        183 LISMMTTDEQFLSWGWRIPFLFSIVLVLIALWV----RNGM-EESAE---FEQ--------QQHEQAA-A-K--------  236 (438)
T ss_pred             HHHHhCCHHHhhccChHHHHHHHHHHHHHHHHH----HHhC-CCChh---HHH--------HHhhccc-c-c--------
Confidence            654        3579999999877654432211    1111 11110   000        0000000 0 0        


Q ss_pred             ccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHH-HHHHHHHhhhcccchhhhhhhhc
Q 008450          265 PEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIW-ATTIIFWTTYAQMITFSVEQATT  343 (565)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  343 (565)
                               +                     +.++   .....++++......... ......+....+.+. +..+..+
T Consensus       237 ---------~---------------------~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~g  282 (438)
T PRK09952        237 ---------K---------------------RIPV---IEALLRHPGAFLKIIALRLCELLTMYIVTAFALN-YSTQNLG  282 (438)
T ss_pred             ---------c---------------------cCCH---HHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcC
Confidence                     0                     0000   000011222222111111 111112221111111 1111111


Q ss_pred             ccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008450          344 MERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARA  423 (565)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~  423 (565)
                      .+..      .......+......+..++.+++.|++.+|          +.+..+.++..++...+......       
T Consensus       283 ~s~~------~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr----------~~~~~~~~~~~~~~~~~~~~~~~-------  339 (438)
T PRK09952        283 LPRE------LFLNIGLLVGGLSCLTIPCFAWLADRFGRR----------RVYITGALIGTLSAFPFFMALEA-------  339 (438)
T ss_pred             CCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCch----------HHHHHHHHHHHHHHHHHHHHHHc-------
Confidence            1111      001122233344455667778887776655          12344444444433322221100       


Q ss_pred             cCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHH-HHHHHHHhhHHhhhhhhcccCCC
Q 008450          424 VGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTT-LSLGFFVSSFLVAVVKKVTGSKG  502 (565)
Q Consensus       424 ~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~-~~lg~~ig~~l~~~l~~~~~~~~  502 (565)
                              ......++...++.+++.+...+..+.++.|.+|++.|+++.|+.+.. +.+++.++|.+.+.+.+.++   
T Consensus       340 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~---  408 (438)
T PRK09952        340 --------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG---  408 (438)
T ss_pred             --------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence                    112223344556667777777888899999999999999999996554 45889999999888754221   


Q ss_pred             CCCccccccccchhhHHHHHHHHHHHHHHHHHhhh
Q 008450          503 GGGWLADNINRGRLDLFYGLLAILSIINLVIYLIC  537 (565)
Q Consensus       503 ~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~  537 (565)
                       ++|          ...+...+++++++++..+..
T Consensus       409 -~~~----------~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        409 -GSW----------HSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             -CCc----------hHHHHHHHHHHHHHHHHHHHc
Confidence             122          345666777777777666544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.90  E-value=1.2e-21  Score=204.44  Aligned_cols=156  Identities=13%  Similarity=0.044  Sum_probs=137.5

Q ss_pred             HHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 008450           34 IAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC  113 (565)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  113 (565)
                      ......+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++.+         
T Consensus        13 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~---------   82 (379)
T TIGR00881        13 NFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFSTS---------   82 (379)
T ss_pred             hhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhhh---------
Confidence            344556678899999999999999999999999999999999999 9999999999999999999988732         


Q ss_pred             CCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHH-HHHH
Q 008450          114 KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV-TVLV  192 (565)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~-~i~g  192 (565)
                                     .+.++++|++.|++.+...+...+++.|++|+++      |++++++.....++|..+++ .+++
T Consensus        83 ---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~  141 (379)
T TIGR00881        83 ---------------LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLF  141 (379)
T ss_pred             ---------------HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHH
Confidence                           7789999999999999999999999999999988      99999999999999999999 5777


Q ss_pred             HhcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          193 YIQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       193 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      .+.+..+|++.|++.+++.++..++.+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (379)
T TIGR00881       142 GIAELYSWHWVFIVPGIIAIIVSLICFL  169 (379)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence            7778889999999887666554444333

>TIGR00895 2A0115 benzoate transport

Probab=99.90  E-value=3.4e-21  Score=202.64  Aligned_cols=363  Identities=14%  Similarity=0.061  Sum_probs=221.0

Q ss_pred             HHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 008450           34 IAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC  113 (565)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  113 (565)
                      ......+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++++++.          
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~----------  103 (398)
T TIGR00895        35 AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVFTLLCALAT----------  103 (398)
T ss_pred             HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHcc----------
Confidence            445566777889999999999999999999999999999999999 999999999999998888887763          


Q ss_pred             CCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHH
Q 008450          114 KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVY  193 (565)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~  193 (565)
                                    +.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++.....++|..+++.++++
T Consensus       104 --------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~  163 (398)
T TIGR00895       104 --------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGW  163 (398)
T ss_pred             --------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHH
Confidence                          26778999999999999999999999999999888      9999999999999999999999999


Q ss_pred             hcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCC
Q 008450          194 IQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHT  273 (565)
Q Consensus       194 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (565)
                      +.+..+|++.|++.++..++..++.+...++.++...++++ ++..+... ....+..  .+..+..       .. ...
T Consensus       164 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~-------~~-~~~  231 (398)
T TIGR00895       164 LIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRRIVN-AIAPQMQ--AEAQSAL-------PE-QKA  231 (398)
T ss_pred             HhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCH-HHHHHHHH-HHHHhcc--ccccccc-------cc-ccc
Confidence            99999999999988655444433333332221110000111 11000000 0000000  0000000       00 000


Q ss_pred             cchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhccccccccccc
Q 008450          274 EQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQI  353 (565)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (565)
                      +....                 +..++.... ....++......................+  +..+....+      ..
T Consensus       232 ~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~------~~  285 (398)
T TIGR00895       232 TQGTK-----------------RSVFKALFQ-GKTARITVLLWLLYFMLLVGVYFLTNWLP--KLMVELGFS------LS  285 (398)
T ss_pred             ccchh-----------------hHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCC------HH
Confidence            00000                 000000000 00001111111111111111111111111  111111111      11


Q ss_pred             CcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcce
Q 008450          354 PAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPV  433 (565)
Q Consensus       354 ~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (565)
                      ..+.......+..++..++.+++.|++.+|           .+..+..+..+....+...                  ..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~------------------~~  336 (398)
T TIGR00895       286 LAATGGALFNFGGVIGSIIFGWLADRLGPR-----------VTALLLLLGAVFAVLVGST------------------LF  336 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchH-----------HHHHHHHHHHHHHHHHHHH------------------hh
Confidence            223344445555666667777776554433           1333333333332222221                  11


Q ss_pred             eehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhh
Q 008450          434 SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVV  494 (565)
Q Consensus       434 s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l  494 (565)
                      +.....+..++.+++.+...+..+++..|.+|++.||++.|+.+....+|..+|+.+.+.+
T Consensus       337 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       337 SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            3334556777888888888999999999999999999999999999999999999988754

>PRK03699 putative transporter; Provisional

Probab=99.90  E-value=5e-21  Score=203.06  Aligned_cols=355  Identities=13%  Similarity=0.117  Sum_probs=225.4

Q ss_pred             HHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008450           35 AVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK  114 (565)
Q Consensus        35 ~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  114 (565)
                      ...+.+.+.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++.+++++++           
T Consensus        26 ~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~l~~~~~-----------   93 (394)
T PRK03699         26 TGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALMILAVAGLMFSH-----------   93 (394)
T ss_pred             HhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHcc-----------
Confidence            33445557789999999999999999999999999999999999 999999999999999999888873           


Q ss_pred             CCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHh
Q 008450          115 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI  194 (565)
Q Consensus       115 ~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l  194 (565)
                                   +.+.+++.|+++|++.|...+...+++.|++|+++      |+++.+..+...++|..++|.+.+++
T Consensus        94 -------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699         94 -------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             -------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         37779999999999999999999999999998887      99999888888889999999988877


Q ss_pred             c-ccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCC
Q 008450          195 Q-DEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHT  273 (565)
Q Consensus       195 ~-~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (565)
                      . +..|||+.|.+.++..++..++.+...  .++ ++++++ +              .    .               . 
T Consensus       155 ~~~~~gw~~~f~~~~~~~~~~~~~~~~~~--~p~-~~~~~~-~--------------~----~---------------~-  196 (394)
T PRK03699        155 LARSIEWYWVYACIGLVYVAIFILTLFSE--FPA-LGKHAP-K--------------A----D---------------K-  196 (394)
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhcC--Ccc-ccccCc-c--------------c----c---------------C-
Confidence            5 457999999987776555444333211  111 000000 0              0    0               0 


Q ss_pred             cchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhccccccccccc
Q 008450          274 EQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQI  353 (565)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (565)
                      +                   +.+..|         +++........+...........+.+ .+..+....+..      
T Consensus       197 ~-------------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p-~~l~~~~g~s~~------  241 (394)
T PRK03699        197 P-------------------VAKEKW---------GIGVLFLAIAALLYILAQLTFISWVP-EYAQKKFGMSLE------  241 (394)
T ss_pred             c-------------------cccccC---------ChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCChH------
Confidence            0                   000001         01111111111111111112212222 222221122111      


Q ss_pred             CcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcce
Q 008450          354 PAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPV  433 (565)
Q Consensus       354 ~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (565)
                      ..+.+.....+...+...+.+++.||+.+|          +.+..+..+..+.+.++..                   ..
T Consensus       242 ~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~----------~~l~~~~~~~~~~~~~~~~-------------------~~  292 (394)
T PRK03699        242 DAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ----------RILTVLAGLALVLMYLFVN-------------------TD  292 (394)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhchh----------hHHHHHHHHHHHHHHHHHH-------------------cC
Confidence            123333444455566666777776655443          1233333343333333322                   12


Q ss_pred             eehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCcccccccc
Q 008450          434 SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINR  513 (565)
Q Consensus       434 s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~  513 (565)
                      +..++.+..++.|++....++...++..+..|++ +++..+.......+|..++|.+.+.+.+..      +        
T Consensus       293 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~------g--------  357 (394)
T PRK03699        293 DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHF------G--------  357 (394)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHh------C--------
Confidence            3344555666777777777788888888877755 677888888888999999999999886422      1        


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhhhh
Q 008450          514 GRLDLFYGLLAILSIINLVIYLICAV  539 (565)
Q Consensus       514 ~~~~~~f~~~a~l~lv~~~~~~~~~~  539 (565)
                        +...+++.+++.++..+..++..+
T Consensus       358 --~~~~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        358 --LQAALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             --chhhhhhhHHHHHHHHHHHHHHHH
Confidence              244566666666666655444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.89  E-value=1e-20  Score=200.65  Aligned_cols=371  Identities=14%  Similarity=0.109  Sum_probs=217.0

Q ss_pred             CCCCchh--hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHH-HHHHHHhhhHHHhhccccchhHHH-HHHHH
Q 008450           16 ADPSKTG--IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMG-TSFLLCLLGGFLADTFLGRYKTIA-IFAAV   91 (565)
Q Consensus        16 ~~~~~~~--~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~-~~~~~   91 (565)
                      ++|.-++  ..++.+++.....+.++.|+.+++|.+.++.|++.+.+.+ +..+.++++|+ +||+ ||||.++ .+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~   91 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLL   91 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHH
Confidence            4444443  6778888888888999999999999999999999887655 55555555666 9999 8888754 55555


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHH-HHHHHHhccccccchhhhhhccCCCCChHhhhhhc
Q 008450           92 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIA-LYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  170 (565)
Q Consensus        92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  170 (565)
                      ..++..+.+++++                        .+.+++. +++.+.+ +...|....+..|+.++++.    ..+
T Consensus        92 ~~~~~~~~~~~~~------------------------~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~  142 (393)
T PRK15011         92 GVLACTLFAWNRN------------------------YFVLLFVGVFLSSFG-STANPQMFALAREHADKTGR----EAV  142 (393)
T ss_pred             HHHHHHHHHHhhH------------------------HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhccc----hHH
Confidence            5566666666632                        4555444 4444444 46677888888887655440    023


Q ss_pred             ceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhcc
Q 008450          171 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRK  250 (565)
Q Consensus       171 ~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (565)
                      ...++.+...++|.++||.+++++.+++|||..|++.++..++..+..+...|+.++++++...                
T Consensus       143 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  206 (393)
T PRK15011        143 MFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG----------------  206 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc----------------
Confidence            4457788889999999999999999989999999988776665544444333322111110000                


Q ss_pred             ccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHH-HHHHHHHHhh
Q 008450          251 MDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPI-WATTIIFWTT  329 (565)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  329 (565)
                           +.+.                                   .       +    ++++........ ......+.. 
T Consensus       207 -----~~~~-----------------------------------~-------~----~~~~~~~~~~~~~~~~~~~~~~-  234 (393)
T PRK15011        207 -----TLEA-----------------------------------P-------R----RNRRDTLLLFVICTLMWGTNSL-  234 (393)
T ss_pred             -----cccc-----------------------------------c-------c----cccccHHHHHHHHHHHHHHHHH-
Confidence                 0000                                   0       0    000101101001 111111111 


Q ss_pred             hcccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHH
Q 008450          330 YAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAA  409 (565)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~  409 (565)
                      +....+.+..+..+.+.      ...+.+.....+..++...+.+++.||+.+|          +.+..+.+...+.+..
T Consensus       235 ~~~~~p~~l~~~~~~~~------~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~----------~~~~~~~~~~~~~~~~  298 (393)
T PRK15011        235 YIINMPLFIINELHLPE------KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR----------FLMRVAAVAGVCFYAG  298 (393)
T ss_pred             HHHHHHHHHHHHcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhChH----------HHHHHHHHHHHHHHHH
Confidence            11111122222111111      1122333333444455667778887776554          1234444444433332


Q ss_pred             HHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhH
Q 008450          410 AALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSF  489 (565)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~  489 (565)
                      ....                   .++++.+...++.+++.+...+....+..|..|++ ||+++++++....+|..+++.
T Consensus       299 ~~~~-------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~  358 (393)
T PRK15011        299 MLMA-------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGS  358 (393)
T ss_pred             HHHH-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHH
Confidence            2211                   12333444555565666666666667778888865 999999999989999999999


Q ss_pred             HhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhh
Q 008450          490 LVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLIC  537 (565)
Q Consensus       490 l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~  537 (565)
                      +++.+.+..                ++...|++.+++.++++++++..
T Consensus       359 l~G~i~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        359 LAGIVAEIW----------------NYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHh----------------hhHHHHHHHHHHHHHHHHHHHhh
Confidence            999875321                13556777777777776665544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.89  E-value=4.5e-21  Score=208.54  Aligned_cols=152  Identities=13%  Similarity=0.109  Sum_probs=124.4

Q ss_pred             HHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008450           37 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  116 (565)
Q Consensus        37 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (565)
                      .+.+++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++.++++++++            
T Consensus        57 ~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~s------------  123 (476)
T PLN00028         57 PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAPAVFCMSLVSS------------  123 (476)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHhcC------------
Confidence            344577889999999999999999999999999999999999 9999999999999999888887733            


Q ss_pred             CcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhc-
Q 008450          117 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ-  195 (565)
Q Consensus       117 ~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~-  195 (565)
                                  ...++++|++.|++.+... ....+++|++|+++      |++++++.....++|..+++.+.+.+. 
T Consensus       124 ------------~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~  184 (476)
T PLN00028        124 ------------ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFP  184 (476)
T ss_pred             ------------HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        6678899999999988764 45567899999998      999999988877888877766665442 


Q ss_pred             ---c-----cccchhhHHHHHHHHHHHHHHHHh
Q 008450          196 ---D-----EISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       196 ---~-----~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                         +     ..|||+.|++.+++.++..+..++
T Consensus       185 ~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        185 LIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence               1     258999999988776655444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.89  E-value=1.4e-20  Score=197.85  Aligned_cols=155  Identities=15%  Similarity=0.169  Sum_probs=136.3

Q ss_pred             HHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 008450           34 IAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC  113 (565)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  113 (565)
                      ..+.++.+ .+++|+++.+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++..++.+++          
T Consensus        10 ~~p~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~----------   77 (377)
T PRK11102         10 YLPALPVI-AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ----------   77 (377)
T ss_pred             HhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc----------
Confidence            34555555 467999999999999999999999999999999999 999999999999999999988773          


Q ss_pred             CCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHH
Q 008450          114 KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVY  193 (565)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~  193 (565)
                                    +.+.+.+.|++.|++.+...+...+++.|.+|+++      |++++++.+...++|..++|.++++
T Consensus        78 --------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~  137 (377)
T PRK11102         78 --------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGW  137 (377)
T ss_pred             --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          26778999999999999999999999999999888      9999999999999999999999999


Q ss_pred             hcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          194 IQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       194 l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      +.+..+|++.|++.++..++..++...
T Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102        138 LLVWFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            999899999999877766655444333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.89  E-value=3.3e-21  Score=210.37  Aligned_cols=151  Identities=17%  Similarity=0.207  Sum_probs=135.2

Q ss_pred             hHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 008450           31 TMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP  110 (565)
Q Consensus        31 ~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~  110 (565)
                      .+.....+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++.+      
T Consensus        35 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~------  107 (496)
T PRK03893         35 DFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLFSVGTLACGFAPG------  107 (496)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhH------
Confidence            344555566778889999999999999999999999999999999999 9999999999999999999888733      


Q ss_pred             CCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHH
Q 008450          111 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTV  190 (565)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i  190 (565)
                                        .+.++++|++.|++.++..+....++.|.+|+++      |++++++.....++|..+++.+
T Consensus       108 ------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~  163 (496)
T PRK03893        108 ------------------YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQV  163 (496)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                              7779999999999999999999999999999988      9999999999999999999999


Q ss_pred             HHHhcccccchhhHHHHHHHHH
Q 008450          191 LVYIQDEISRSVGYGICSVAMF  212 (565)
Q Consensus       191 ~g~l~~~~gw~~~f~i~~~~~~  212 (565)
                      .+++.+.++||+.|++..+..+
T Consensus       164 ~~~l~~~~~w~~~f~~~~~~~~  185 (496)
T PRK03893        164 YSLVVPVWGWRALFFIGILPII  185 (496)
T ss_pred             HHHHhccCCHHHHHHHHHHHHH
Confidence            9999999999999987544433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.89  E-value=3.6e-21  Score=205.89  Aligned_cols=399  Identities=11%  Similarity=0.041  Sum_probs=232.3

Q ss_pred             cccCCCCCCCchhhHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHH
Q 008450           10 DYKGSPADPSKTGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFA   89 (565)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~   89 (565)
                      +++.+|.+-.-....++..+++....+.++.|+.+++|++..+.|++.+.+.++..+++++.|+++||+ |||+++.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~   83 (420)
T PRK09528          5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWII   83 (420)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHH
Confidence            344455555555577888888888899999999999999999999999999999999999999999999 9999998876


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhh
Q 008450           90 AVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  169 (565)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  169 (565)
                      .+..++..........+.                   . ......+..+.++..+...+...+.+.++.++..    +++
T Consensus        84 ~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  139 (420)
T PRK09528         84 SGLLVLFGPFFIYVFAPL-------------------L-QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRS  139 (420)
T ss_pred             HHHHHHHHHHHHHHHHHH-------------------H-HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhc
Confidence            665554432211100000                   0 0001122222233333333333333333332111    127


Q ss_pred             cceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhc
Q 008450          170 AYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKR  249 (565)
Q Consensus       170 ~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (565)
                      +..++..+...++|.+++|.+++++.+ .+|+++|++.++..++++++.+...++.+++ ++.++.+             
T Consensus       140 g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------  204 (420)
T PRK09528        140 GFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST-AKVANAL-------------  204 (420)
T ss_pred             cccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch-hhhccch-------------
Confidence            778888888899999999999999876 5899999988777666555554433321110 0000000             


Q ss_pred             cccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhh
Q 008450          250 KMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTT  329 (565)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (565)
                       .  +                 ..+...+.+...                      ..++++.....+........+...
T Consensus       205 -~--~-----------------~~~~~~~~~~~~----------------------~l~~~~~~~l~l~~~~~~~~~~~~  242 (420)
T PRK09528        205 -G--A-----------------NASAVSLKDALA----------------------LLKLPKFWFLVLYVIGVACFYDVF  242 (420)
T ss_pred             -h--c-----------------ccccccHHHHHH----------------------HccCCCeEeehHHHHHHHHHHHHH
Confidence             0  0                 000000000000                      001111111111111111111111


Q ss_pred             hcccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHH
Q 008450          330 YAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAA  409 (565)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~  409 (565)
                      ..+.+. +..+. ..+....  ....+.+..+..+...+..++.+++.||+.+|          +.+..+.++..++...
T Consensus       243 ~~~~~~-~~~~~-~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~----------~~~~~~~~l~~~~~~l  308 (420)
T PRK09528        243 DQQFPN-FFASF-FATPEQG--TRVFGYLNSFQVFLEALIMFFAPFIINRIGAK----------NALLLAGTIMAVRIIG  308 (420)
T ss_pred             HHHHHH-HHHHH-HhccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----------hhhHHHHHHHHHHHHH
Confidence            122222 21111 0010100  01123344445555667777778887766655          2256666666666666


Q ss_pred             HHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHH-HHHHHHHHHHHhh
Q 008450          410 AALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL-FLTTLSLGFFVSS  488 (565)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~lg~~ig~  488 (565)
                      +.+.                   .++++++...++.+++.....+....++.+..|++.+++..++ +++...+|..+++
T Consensus       309 ~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~  369 (420)
T PRK09528        309 SGFA-------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLS  369 (420)
T ss_pred             HHhc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHH
Confidence            5542                   2445566677888888877777888899999999999988766 6777889999999


Q ss_pred             HHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008450          489 FLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAV  539 (565)
Q Consensus       489 ~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~  539 (565)
                      .+.+.+.+..      |          +...|.+.+++.++..++.+...+
T Consensus       370 ~~~G~l~~~~------G----------~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        370 TLAGNLYDSI------G----------FQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHHhh------C----------chHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999886421      1          356778778877777666555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.89  E-value=7.8e-21  Score=201.29  Aligned_cols=148  Identities=17%  Similarity=0.125  Sum_probs=130.4

Q ss_pred             HHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCc
Q 008450           39 VTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT  118 (565)
Q Consensus        39 ~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  118 (565)
                      .+++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.+++               
T Consensus        31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~---------------   94 (394)
T PRK11652         31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFILGTLVALFAH---------------   94 (394)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHHHHc---------------
Confidence            4556789999999999999999999999999999999999 999999999999999888887762               


Q ss_pred             ccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccc
Q 008450          119 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEI  198 (565)
Q Consensus       119 ~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~  198 (565)
                               +.+.+++.|++.|++.+...+....+..|.+++++      ++++.++...+..+|..+||.+++++.+..
T Consensus        95 ---------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  159 (394)
T PRK11652         95 ---------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLF  159 (394)
T ss_pred             ---------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                     27779999999999999888888889999888877      899999998999999999999999999989


Q ss_pred             cchhhHHHHHHHHHHHHHH
Q 008450          199 SRSVGYGICSVAMFMAIII  217 (565)
Q Consensus       199 gw~~~f~i~~~~~~~~~~~  217 (565)
                      |||+.|++.++..++..+.
T Consensus       160 g~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        160 GWRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             ChHHHHHHHHHHHHHHHHH
Confidence            9999999877665544333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.7e-21  Score=197.62  Aligned_cols=378  Identities=15%  Similarity=0.067  Sum_probs=242.1

Q ss_pred             HHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 008450           38 LVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETA  117 (565)
Q Consensus        38 l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  117 (565)
                      ..+++.++.++|..|.|++.+++.+++.++-.+.|.++||. +.|+.+-+++++.++..+++.++++             
T Consensus        51 a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai~nil~Gfs~s-------------  116 (448)
T COG2271          51 AMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAIVNILFGFSPS-------------  116 (448)
T ss_pred             ccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHHHHHHHhhhhH-------------
Confidence            45666677889999999999999999999999999999999 9999999999999999999999854             


Q ss_pred             cccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH--HHhc
Q 008450          118 THTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL--VYIQ  195 (565)
Q Consensus       118 ~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~--g~l~  195 (565)
                                 ...+.+.-++.|...|.-.|.....++.++|.++      ||+..++.+.+-|+|..+.|++.  +++.
T Consensus       117 -----------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         117 -----------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             -----------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHH
Confidence                       7779999999999999999999999999999999      99999999999999999999999  9999


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCc-hHHHHHHHHHHHHhccccCCCCcCccccCCccccc--cCC
Q 008450          196 DEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSP-IVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASR--IHH  272 (565)
Q Consensus       196 ~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  272 (565)
                      .+.+||..|++++++.++..++.++..+..+.+  .+-| .++                       +..|+.+..  ...
T Consensus       180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs--~GLP~ie~-----------------------~~~d~~e~~~~~~~  234 (448)
T COG2271         180 FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS--EGLPPIEE-----------------------YRGDPLEIYEEEKE  234 (448)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhCCCccc--cCCCCHHH-----------------------hhcCchhhhhhhcc
Confidence            999999999999988765544444433322111  1111 111                       110110000  000


Q ss_pred             CcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccc
Q 008450          273 TEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQ  352 (565)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (565)
                      .+..+..+..                     .+-+...|.+..+.......-+.-.......+.+..+..+++..     
T Consensus       235 ~~~ls~~~i~---------------------~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~-----  288 (448)
T COG2271         235 NEGLTAWQIF---------------------VKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLV-----  288 (448)
T ss_pred             CCCccHHHHH---------------------HHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH-----
Confidence            0000000000                     00111112222111111110011111122223455555444433     


Q ss_pred             cCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcc
Q 008450          353 IPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLP  432 (565)
Q Consensus       353 ~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (565)
                       ...+...+.....+....+.+++.|++.+..+     .+.  -.+.+++..++++.+-..                 .+
T Consensus       289 -~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR-----~p~--~~i~~~~i~~~~~~~w~~-----------------~~  343 (448)
T COG2271         289 -KANWAISLFEVAGLPGTLLAGWLSDKLFKGRR-----GPM--ALIFMLLITASLVLYWLA-----------------PN  343 (448)
T ss_pred             -HHHHHHHHHHHHhhHHHHHHHHHHHHhccccc-----chH--HHHHHHHHHHHHHHHHcC-----------------CC
Confidence             34455566677788888889999988875421     111  122222233333322211                 01


Q ss_pred             eeehhhHHHHHHHHHHHHHhhhh--hHhhhhccCCchhhHHHHHHHHHHHHH-HHHHhhHHhhhhhhcccCCCCCCcccc
Q 008450          433 VSVFLLIPQFFLVGAGEAFIYTG--QLDFFITKSPKGMKTMSTGLFLTTLSL-GFFVSSFLVAVVKKVTGSKGGGGWLAD  509 (565)
Q Consensus       433 ~s~~~li~~~~l~g~g~~~~~~~--~~~~~~~~~P~~~rg~~~gl~~~~~~l-g~~ig~~l~~~l~~~~~~~~~~~w~~~  509 (565)
                      .++....++++..|+  ....|-  .-....|.+|++..|+++|+...+..+ |.+.+....+++.+.      -||   
T Consensus       344 ~~~~l~~~~l~~iGf--~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~------~gW---  412 (448)
T COG2271         344 GSYLLDAILLFIIGF--LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT------WGW---  412 (448)
T ss_pred             ccHHHHHHHHHHHHH--HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec------CCC---
Confidence            233444444444443  332332  233567999999999999999999888 888888777766432      355   


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHhhhhhh
Q 008450          510 NINRGRLDLFYGLLAILSIINLVIYLICAVW  540 (565)
Q Consensus       510 ~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~  540 (565)
                             ...|.++.+.++++.++++.....
T Consensus       413 -------~g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         413 -------DGGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             -------cchHHHHHHHHHHHHHHHHHHHhh
Confidence                   456788888888887777666544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.89  E-value=1.6e-20  Score=198.31  Aligned_cols=147  Identities=12%  Similarity=0.179  Sum_probs=127.4

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++..+....+.+.++.|+. ++|.|..+.|++.+.+.++..+++++.|+++||+ |||+++.++.++.+++..+++++
T Consensus        14 ~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~~~~~~~~~   91 (381)
T PRK03633         14 GLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAAGCAGLGLM   91 (381)
T ss_pred             HHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            455665665556666776654 7899999999999999999999999999999999 99999999999999999988887


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      ++                        ++.++++|+++|++.+...|...+.+.|..++++      |+++++++....++
T Consensus        92 ~~------------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  141 (381)
T PRK03633         92 VG------------------------FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYL  141 (381)
T ss_pred             cc------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHH
Confidence            32                        7789999999999999998888888888888877      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccch
Q 008450          183 GTLMAVTVLVYIQDEISRS  201 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~  201 (565)
                      |..+|+.+++++.+...|.
T Consensus       142 g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        142 GTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHhcccccccch
Confidence            9999999999987754333

>TIGR00889 2A0110 nucleoside transporter

Probab=99.89  E-value=2.6e-20  Score=199.25  Aligned_cols=382  Identities=14%  Similarity=0.088  Sum_probs=224.4

Q ss_pred             HHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           33 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      ...+.+++|+.+++|++..|.|++.+.+.++..++++++|+++||+.+||+++.++.++..++..+..+.++        
T Consensus        20 ~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~--------   91 (418)
T TIGR00889        20 SWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTT--------   91 (418)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence            344889999999999999999999999999999999999999999834577888888777777777766532        


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCC-h-HhhhhhcceeehhhHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKD-E-KEKTQMAYFFSRFFFFISLGTLMAVTV  190 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~-~-~~~~~r~~~~~~~~~~~~lg~~lg~~i  190 (565)
                                      ++.+++.|++.|++.+...+...++..+...+.. + .+.-.|.+.++      ++|.++||.+
T Consensus        92 ----------------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l  149 (418)
T TIGR00889        92 ----------------PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWA  149 (418)
T ss_pred             ----------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHH
Confidence                            6678888999999888777776665543332110 0 00001444443      5789999999


Q ss_pred             HHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCcccccc
Q 008450          191 LVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRI  270 (565)
Q Consensus       191 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (565)
                      +|.+.....|+ +|++.++..++..++.+ ..++.++ ++++++ .+.        +                       
T Consensus       150 ~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~-~~~~~~-~~~--------~-----------------------  194 (418)
T TIGR00889       150 VSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPV-AKSTAK-MSI--------K-----------------------  194 (418)
T ss_pred             HHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCC-Cccccc-cCH--------H-----------------------
Confidence            99884433344 45555555444433322 2222111 000000 000        0                       


Q ss_pred             CCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhccccccc-
Q 008450          271 HHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG-  349 (565)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  349 (565)
                       +....+.   .                      ...++++........+.......... .....+..+. ..+.... 
T Consensus       195 -~~~~~~~---~----------------------~~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-g~~~~~~~  246 (418)
T TIGR00889       195 -VMLGLDA---F----------------------ILFKNKRMAIFFFFSMLLGAPLQITN-IFGNGFLHEF-GRNPEFAD  246 (418)
T ss_pred             -HHhhhhH---H----------------------HHhcCCCeeeHHHHHHHHHhHHHHHH-HhHHHHHHHh-cccccccc
Confidence             0000000   0                      00011111111111111111111111 1111121111 1010000 


Q ss_pred             ccc-cCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 008450          350 RFQ-IPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTT  428 (565)
Q Consensus       350 ~~~-~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (565)
                      ++. ...+....+..+..++...+.+++.|++.+|          +.+.++.++..+++..+.....             
T Consensus       247 ~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r----------~~l~~~~~~~~v~~~l~~~~~~-------------  303 (418)
T TIGR00889       247 SFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK----------KVMLLSLVAWALRFGFFAYGDP-------------  303 (418)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHHHHHcCc-------------
Confidence            000 1123344555556666667777776666554          3467777777777665544210             


Q ss_pred             CCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHH-HHHHHHHHHhhHHhhhhhhcccCCCCCCcc
Q 008450          429 ATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFL-TTLSLGFFVSSFLVAVVKKVTGSKGGGGWL  507 (565)
Q Consensus       429 ~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~  507 (565)
                        .....+.+++..++.+++++...+....++.|.+|++.||+++|+.+ ....+|..+|+.+.+.+.+..+..+..+  
T Consensus       304 --~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~--  379 (418)
T TIGR00889       304 --EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFD--  379 (418)
T ss_pred             --chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCc--
Confidence              01123345567888999998888998999999999999999999997 5678999999999998875432111112  


Q ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 008450          508 ADNINRGRLDLFYGLLAILSIINLVIYLICAVWYK  542 (565)
Q Consensus       508 ~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~  542 (565)
                              +...|.+.+++.++..++++++.++..
T Consensus       380 --------~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       380 --------WQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence                    356788888888888888777776653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11043 putative transporter; Provisional

Probab=99.89  E-value=2.7e-20  Score=197.60  Aligned_cols=148  Identities=14%  Similarity=0.195  Sum_probs=130.8

Q ss_pred             hhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccc
Q 008450           42 LVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTC  121 (565)
Q Consensus        42 l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  121 (565)
                      +.+++|.++.+.+++.+.+.++..++.+++|+++||+ |||+++..+..+..++.++++++.                  
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------   92 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE------------------   92 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc------------------
Confidence            6789999999999999999999999999999999999 999999999999998888888773                  


Q ss_pred             cCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccch
Q 008450          122 EQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRS  201 (565)
Q Consensus       122 ~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~  201 (565)
                            +.+.+++.|+++|++.+...+...+++.|++|+++      +++.++......++|..++|.+++++.+..|||
T Consensus        93 ------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~  160 (401)
T PRK11043         93 ------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQ  160 (401)
T ss_pred             ------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence                  27778999999999998888888899999999887      888888888888999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHh
Q 008450          202 VGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       202 ~~f~i~~~~~~~~~~~~~~  220 (565)
                      +.|++.++..++..+..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        161 AIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999887766655544443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.89  E-value=5.1e-20  Score=194.54  Aligned_cols=360  Identities=10%  Similarity=0.025  Sum_probs=224.1

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHH-HHHHH-HHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV-QTLGT-GMLA  100 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~~~~-~~~a  100 (565)
                      ..++...++-...+.++.|+ +++|.|..+++++.+.+.+...+++++.|+++||+ ||++.....+.+ ..+.. .++.
T Consensus        12 ~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~~~~~   89 (382)
T TIGR00902        12 GFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAAAFSA   89 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence            34445444444556777777 57899999999999999999999999999999999 885433222211 11111 1222


Q ss_pred             HHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHH
Q 008450          101 MVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFI  180 (565)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (565)
                      .++                        +++.+++.|++++.+.+...|...++..+.  .++      |++.++......
T Consensus        90 ~~~------------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~~~  137 (382)
T TIGR00902        90 GAH------------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRLIG  137 (382)
T ss_pred             hhh------------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHHHH
Confidence            331                        378899999999999999888888886553  234      899999999999


Q ss_pred             HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcc
Q 008450          181 SLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGML  260 (565)
Q Consensus       181 ~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (565)
                      ++|.++||.+++++.+.+|||..|++..+..++.+ +.+...++.   +|++++.++                  .    
T Consensus       138 slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~------------------~----  191 (382)
T TIGR00902       138 SAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTI---PPKDAIPED------------------E----  191 (382)
T ss_pred             HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCC---CCCcccccc------------------c----
Confidence            99999999999999999999999987655433222 222222211   111000000                  0    


Q ss_pred             ccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhh
Q 008450          261 YEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQ  340 (565)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (565)
                                 ..+..++                         .+..++++........+.....+...+. ..+.+...
T Consensus       192 -----------~~~~~~~-------------------------~~~l~~~~~~~~l~~~~l~~~~~~~~~~-~~~~~l~~  234 (382)
T TIGR00902       192 -----------SQGDSAF-------------------------IALLKNPMNLRFLAAVCLIQGAHAAYYG-FSAIYWQA  234 (382)
T ss_pred             -----------cccchhH-------------------------HHHHcChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence                       0000000                         0011222222222112222222222222 11122221


Q ss_pred             hhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008450          341 ATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSV  420 (565)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~  420 (565)
                       .+.+      ....+.+..+..+..++...+.+++.+|+          +..+.+.++.++..+....+.+.       
T Consensus       235 -~g~s------~~~~g~l~~~~~~~~i~~~~~~~~l~~r~----------g~~~~l~~~~~~~~~~~~~~~~~-------  290 (382)
T TIGR00902       235 -AGIS------ASATGLLWGIGVLAEIIIFAFSNKLFQNC----------SARDLLLISAIACVGRWAIIGAI-------  290 (382)
T ss_pred             -CCCC------HhHHHHHHHHHHHHHHHHHHHhHHHHhhC----------CHHHHHHHHHHHHHHHHHHHHhH-------
Confidence             1111      11122333344455555555555553333          33455788888888888777653       


Q ss_pred             hhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHH-HHHHHHHHhhHHhhhhhhccc
Q 008450          421 ARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLT-TLSLGFFVSSFLVAVVKKVTG  499 (565)
Q Consensus       421 ~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~-~~~lg~~ig~~l~~~l~~~~~  499 (565)
                                  .+++.+++..++.++..+...+....++.+. |++.|++++++++. ...+|..+++.++|.+.+..+
T Consensus       291 ------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g  357 (382)
T TIGR00902       291 ------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG  357 (382)
T ss_pred             ------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                        3456677788999999999999999999988 99999999999874 567999999999998864221


Q ss_pred             CCCCCCccccccccchhhHHHHHHHHHHHHHHHH
Q 008450          500 SKGGGGWLADNINRGRLDLFYGLLAILSIINLVI  533 (565)
Q Consensus       500 ~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~  533 (565)
                                       ...|++.++++++++++
T Consensus       358 -----------------~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       358 -----------------AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             -----------------HHHHHHHHHHHHHHHHH
Confidence                             24577777777766544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.88  E-value=2.1e-20  Score=200.89  Aligned_cols=157  Identities=14%  Similarity=0.063  Sum_probs=122.1

Q ss_pred             HhHHHHHHHHHHhhhcCCCCchhhhhHH-HHH-----HHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 008450           30 STMGIAVNLVTYLVGTMHLPSATSANIV-TDF-----MGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVT  103 (565)
Q Consensus        30 ~~~~~~~~l~~yl~~~l~~s~~~~~~~~-~~~-----~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~  103 (565)
                      ..........+.+.++++.+..+.+++. +..     .+...+++++.|+++||+ |||++++.+.+++.++++++++++
T Consensus        29 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~l~~~~~  107 (434)
T PRK15075         29 FDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVTLSIMASGTLLIAFVP  107 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHHHHHHHHHHHHHHhCC
Confidence            3344566777888999999888765543 222     222246789999999999 999999999999999999999884


Q ss_pred             hhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHH
Q 008450          104 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLG  183 (565)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg  183 (565)
                      +...                ........++++|+++|++.|...+....+++|++|+++      |+++.++.....++|
T Consensus       108 ~~~~----------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g  165 (434)
T PRK15075        108 GYAT----------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVA  165 (434)
T ss_pred             cHHH----------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHH
Confidence            3211                000012357899999999999999999999999999999      999999999888888


Q ss_pred             HHHHHHHHHHhc--------ccccchhhHHHHHH
Q 008450          184 TLMAVTVLVYIQ--------DEISRSVGYGICSV  209 (565)
Q Consensus       184 ~~lg~~i~g~l~--------~~~gw~~~f~i~~~  209 (565)
                      ..+|+.+++.+.        +.+|||++|++..+
T Consensus       166 ~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        166 VVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            888888877652        46899999987543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.88  E-value=7.8e-20  Score=193.53  Aligned_cols=152  Identities=13%  Similarity=0.105  Sum_probs=134.1

Q ss_pred             HHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008450           37 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  116 (565)
Q Consensus        37 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (565)
                      ...+.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.++..++..++..+++            
T Consensus        24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~~~~------------   90 (392)
T PRK10473         24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLAET------------   90 (392)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHHhCc------------
Confidence            345556788999999999999999999999999999999999 9999999999999999888887632            


Q ss_pred             CcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcc
Q 008450          117 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  196 (565)
Q Consensus       117 ~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~  196 (565)
                                  ...++++|+++|++.+...+...+++.|.+|+++      |+++.++.+...++|..++|.+++++.+
T Consensus        91 ------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~  152 (392)
T PRK10473         91 ------------SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIML  152 (392)
T ss_pred             ------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                        6678899999999999999999999999999988      9999999999999999999999999888


Q ss_pred             cccchhhHHHHHHHHHHHHHHHH
Q 008450          197 EISRSVGYGICSVAMFMAIIIFL  219 (565)
Q Consensus       197 ~~gw~~~f~i~~~~~~~~~~~~~  219 (565)
                      ..+|++.|++.+++.++..++..
T Consensus       153 ~~g~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473        153 KFPWQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             CcChHHHHHHHHHHHHHHHHHHH
Confidence            89999999988776655544433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.88  E-value=2.1e-20  Score=201.19  Aligned_cols=157  Identities=8%  Similarity=0.010  Sum_probs=130.4

Q ss_pred             HHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008450           37 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  116 (565)
Q Consensus        37 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (565)
                      ...+++++ +|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++++..+..          
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~----------  115 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT----------  115 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc----------
Confidence            34566665 599999999999999999999999999999999 999999999999998888876652111          


Q ss_pred             CcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHH-hc
Q 008450          117 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVY-IQ  195 (565)
Q Consensus       117 ~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~-l~  195 (565)
                                .+...+.+.|++.|++.|...+.....+.|++|+++      |++++++++...++|..+++.+.+. +.
T Consensus       116 ----------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~  179 (438)
T TIGR00712       116 ----------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMA  179 (438)
T ss_pred             ----------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence                      136678889999999999999999999999999999      9999999999999999998877765 44


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHhc
Q 008450          196 DEISRSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       196 ~~~gw~~~f~i~~~~~~~~~~~~~~~  221 (565)
                      ...+||+.|++.+++.++..+..++.
T Consensus       180 ~~~~w~~~f~~~~~~~~i~~~~~~~~  205 (438)
T TIGR00712       180 WFNDWHAALYFPAICAIIVALFAFAM  205 (438)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            45789999999887766654444443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.88  E-value=6.9e-20  Score=199.66  Aligned_cols=351  Identities=14%  Similarity=0.156  Sum_probs=235.8

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      .++.++++.+.-..-++-++. ++.-|+...+++..+..+..++..+++|.++||+ .|||+++.+-++..+..+..++.
T Consensus        18 a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~~l   95 (524)
T PF05977_consen   18 AQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLAVL   95 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHH
Confidence            677777776655555555544 5677889999999999999999999999999999 99999999998887766665554


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      .....                   .+.+.+++.-++.|++.+...|+.++++.|..|+++      ..++.++.....|+
T Consensus        96 ~~~~~-------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~ni  150 (524)
T PF05977_consen   96 AFFGL-------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNI  150 (524)
T ss_pred             HHhCc-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHH
Confidence            22121                   357889999999999999999999999999999998      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYE  262 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (565)
                      ..++||.++|.+....|-.++|.+.++..++++..+...+++.   +++..+.+...+.+...++               
T Consensus       151 ar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~r---------------  212 (524)
T PF05977_consen  151 ARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP---PPSSLPRERFFSALREGLR---------------  212 (524)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHHH---------------
Confidence            9999999999999889999999998887776655544443321   1111111111111111110               


Q ss_pred             CCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhh
Q 008450          263 DTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQAT  342 (565)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (565)
                                                                 .+...+.+...+.......++...+..+...+..+..
T Consensus       213 -------------------------------------------yv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l  249 (524)
T PF05977_consen  213 -------------------------------------------YVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVL  249 (524)
T ss_pred             -------------------------------------------HHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHh
Confidence                                                       0011111111111111111111111111222322221


Q ss_pred             cccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008450          343 TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVAR  422 (565)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~  422 (565)
                      +.+      ....+.+.....++.++.+.+..++    .+|      .+..+.+..+.++.+++++.+++.         
T Consensus       250 ~~~------a~~yGll~a~~gvGai~Gal~~~~l----~~~------~~~~~lv~~~~~~~a~~~~~lal~---------  304 (524)
T PF05977_consen  250 GGG------ASGYGLLLAAFGVGAILGALLLPRL----RRR------LSSRRLVLLASLLFALALLLLALS---------  304 (524)
T ss_pred             CCc------HHHHHHHHHHHHHHHHHHHHHHHHh----hcc------cCcchhhHHHHHHHHHHHHHHhcc---------
Confidence            111      1112333344444444444443333    222      233344666777777777666552         


Q ss_pred             hcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 008450          423 AVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKK  496 (565)
Q Consensus       423 ~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~  496 (565)
                                .+.+..++.+++.|++.....+..++.+.+.+|+++||+..+++++....+..+|+.+.|.+.+
T Consensus       305 ----------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  305 ----------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      3455667788899999999999999999999999999999999999999999999999998864

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.2e-19  Score=192.94  Aligned_cols=399  Identities=14%  Similarity=0.082  Sum_probs=244.6

Q ss_pred             hhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHH
Q 008450           53 SANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVL  132 (565)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (565)
                      .+.+++++.++.++++.++|+++||+ |||..+.++.++..++.+++.++...+.                     +.++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~~---------------------~e~l  119 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAPS---------------------FEML  119 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhhh---------------------HHHH
Confidence            46778899999999999999999999 9999999999999999998888865555                     8899


Q ss_pred             HHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH--HhcccccchhhHHHHHHH
Q 008450          133 YIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV--YIQDEISRSVGYGICSVA  210 (565)
Q Consensus       133 ~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g--~l~~~~gw~~~f~i~~~~  210 (565)
                      .++|++.|+..|......+-++.|..|.+.      ||........+.++|..+|..++.  .+.....|.+.+.+..+.
T Consensus       120 i~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~  193 (485)
T KOG0569|consen  120 ILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIP  193 (485)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHH
Confidence            999999999999999999999999999999      999999999999999999966653  445666799999888877


Q ss_pred             HHHHHHHHHhcc--cccccc-CCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcchhHHhHHHHhhc
Q 008450          211 MFMAIIIFLAGT--KRYRYK-KSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAE  287 (565)
Q Consensus       211 ~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (565)
                      .++.++...+.+  |++-.. +.+.++.++..+   ....+   +   +.              .++.+.   .....+.
T Consensus       194 ~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~---~y~G~---~---~~--------------~~~~e~---~~~e~~~  247 (485)
T KOG0569|consen  194 ALLQLALLPFLPESPKYLLIKKGDEEEARKALK---FYRGK---E---DV--------------EAEIEE---MLREIEE  247 (485)
T ss_pred             HHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHH---HHhCC---C---cc--------------hhHHHH---HHHHHHH
Confidence            776666655543  333222 222122221111   11100   0   00              000000   0000000


Q ss_pred             CCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccccCcchhhhhhhHHHH
Q 008450          288 GDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAIL  367 (565)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  367 (565)
                      ....+.+..+.+..++.+  ..|+.....+.+...+...........+........+...      ...+.+....+..+
T Consensus       248 ~~~~~~~~~sl~~~~~~~--~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~------~a~~an~~~g~v~~  319 (485)
T KOG0569|consen  248 EELEKKKQISLRQLLKNP--TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE------EAQYANLGIGIVNL  319 (485)
T ss_pred             hccccccCCcHHHHhcCc--chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH------HHHHHHHHHHHHHH
Confidence            000000001111111111  1122222222221221111111111111111111111111      12233444444445


Q ss_pred             HHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHH
Q 008450          368 ITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGA  447 (565)
Q Consensus       368 i~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~  447 (565)
                      +.......++|+++||          ..+.++..++.+...++.......+...          +.-.+..+.+.++..+
T Consensus       320 ~~t~~~~~lid~~gRR----------pLll~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~y~~i~~~~~~~~  379 (485)
T KOG0569|consen  320 LSTLVSPFLIDRLGRR----------PLLLISLSLMAVALLLMSIALFLSNSFG----------SWLSYLCIAAIFLFII  379 (485)
T ss_pred             HHHHHHHHHHHhcCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHH
Confidence            5555555666666766          2366677777776666655433221110          0111223444444444


Q ss_pred             HHHH-hhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHH
Q 008450          448 GEAF-IYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAIL  526 (565)
Q Consensus       448 g~~~-~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l  526 (565)
                      +..+ ..|..+-+.+|++|++.|..++++..+++++..++-....+.+.+..+                 ..+|..+++.
T Consensus       380 ~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF~i~  442 (485)
T KOG0569|consen  380 SFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILFVIP  442 (485)
T ss_pred             hhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHHHHH
Confidence            4443 479999999999999999999999999999999999998888865432                 2568889999


Q ss_pred             HHHHHHHHhhhhhhcCCCCCccch
Q 008450          527 SIINLVIYLICAVWYKPKKPKAGI  550 (565)
Q Consensus       527 ~lv~~~~~~~~~~~~~~~~~~~~~  550 (565)
                      +++..+..+...||+|+|+..|..
T Consensus       443 ~~~~~i~~~~~lPETkgr~~~eI~  466 (485)
T KOG0569|consen  443 LAIFLIYLYRYLPETKGRTPYEII  466 (485)
T ss_pred             HHHHHHHHHHhCcccCCCCHHHHH
Confidence            999999999999999999876654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.87  E-value=7.1e-20  Score=219.54  Aligned_cols=337  Identities=11%  Similarity=0.024  Sum_probs=198.3

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHH--HHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchh
Q 008450           51 ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV--QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQ  128 (565)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (565)
                      ...++..+++.+.+.++.+++|+++||+ |||+++......  ......+.++.  .+                     +
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~--~~---------------------s  107 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFH--LN---------------------S  107 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHH--Hh---------------------h
Confidence            4567888899999999999999999999 999986442222  22221222221  01                     3


Q ss_pred             HHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHH
Q 008450          129 MGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICS  208 (565)
Q Consensus       129 ~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~  208 (565)
                      ++.++++|+++|++.+...|+..+++.|++|+++      |++++++..++.++|.++||+++|++.+..+|++.|.+.+
T Consensus       108 ~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~  181 (1140)
T PRK06814        108 VPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLM  181 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            7889999999999999999999999999999998      9999999999999999999999999999999999995554


Q ss_pred             HHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcC
Q 008450          209 VAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEG  288 (565)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (565)
                      ++.++++++.+...+ .+..++.........+.....+                                          
T Consensus       182 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------------------------------  218 (1140)
T PRK06814        182 GIAVLGWLASLFIPK-TGNAAPDLKIDRNIIRSTITLL------------------------------------------  218 (1140)
T ss_pred             HHHHHHHHHHhhCCC-CCCCCCCCeeccchHHHHHHHH------------------------------------------
Confidence            444444433333222 1111110000000000000000                                          


Q ss_pred             CCCCCCCCCCCccccchhhHhHhHHHh-HHHHHHHHHHHHhhhcccchhhhhhhhcccccccccccCcchhhhhhhHHHH
Q 008450          289 DFEAGSTPNPWKLCSVTSVEEVKMVAR-LLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAIL  367 (565)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  367 (565)
                                      ......+.+.. .+..............+++ .+..+....+      ....+.+.....+..+
T Consensus       219 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~------~~~~g~~~~~~~~g~~  275 (1140)
T PRK06814        219 ----------------KYAKADKRIWLAILGISWFWLVGAVVLSQLP-LLAKETLGGD------ENVATLFLAVFSVGVA  275 (1140)
T ss_pred             ----------------HHHhcCchHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHcCCc------hHHHHHHHHHHHHHHH
Confidence                            00011111111 1111111111111112222 2222211111      1123344555566666


Q ss_pred             HHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC---CCCCcceeehhhHHHHHH
Q 008450          368 ITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGL---TTATLPVSVFLLIPQFFL  444 (565)
Q Consensus       368 i~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~li~~~~l  444 (565)
                      +...+.+++.++..++          +.+..+.++.++..+.+.+.....  ......+   ---....+.+.+++..++
T Consensus       276 ig~~~~g~l~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (1140)
T PRK06814        276 VGSFLASKLSEGRITL----------LYVPIGALLMGLFGLDLAFASSSV--PAEPAQLKSILVFLSKRHGWRILIDLFG  343 (1140)
T ss_pred             HHHHHHHHHhCCceee----------eeehHHHHHHHHHHHHHHhccccc--ccccccccchhhhhcccccHHHHHHHHH
Confidence            6667666664432222          112333333333333222210000  0000000   000001344566678888


Q ss_pred             HHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 008450          445 VGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK  495 (565)
Q Consensus       445 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~  495 (565)
                      .|++.++..+..++++.+.+|++.||+++|+.++...++..+++.+.+.+.
T Consensus       344 ~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        344 LAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999988875

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.87  E-value=5e-22  Score=209.27  Aligned_cols=366  Identities=35%  Similarity=0.564  Sum_probs=239.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCC
Q 008450           82 YKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEK  161 (565)
Q Consensus        82 r~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~  161 (565)
                      .|++.++.+++.+|.+++.+++. |..              .++..+.+.++++.++.++|+|+.+|+..++++|+++++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~-~~~--------------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~   65 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAI-PPS--------------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED   65 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHT-SSS--------------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHh-cch--------------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc
Confidence            37899999999999999888754 321              123446788999999999999999999999999999987


Q ss_pred             ChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhcccccccc-CCCCCchHH-HH
Q 008450          162 DEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYK-KSSGSPIVH-IF  239 (565)
Q Consensus       162 ~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~  239 (565)
                      ++   .+|.++++++|+++|+|..+++.+.+++.+++||.+.|.++++..+++++.++..+++++++ +|.+.+..+ ..
T Consensus        66 ~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~  142 (372)
T PF00854_consen   66 DD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIK  142 (372)
T ss_dssp             TT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SH
T ss_pred             ch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHH
Confidence            41   23889999999999999999999999999999999999999999999999999988888776 566666555 44


Q ss_pred             HHHHHHHHhccccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCcc-ccchhhHhHhHHHhHHH
Q 008450          240 QVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKL-CSVTSVEEVKMVARLLP  318 (565)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  318 (565)
                      .++....+++....+....+..................... ........      ...|.. ++.++++..+.+.+.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~k~~~~~~~  215 (372)
T PF00854_consen  143 LVLVAAFKKRKLAVPKGSSWLDWALFQYSERSIFGIIVFIR-AAVIFFPE------IFFWALFCQVQRVEELKALIRFLP  215 (372)
T ss_dssp             HHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHHCCC------HHHHTTTSSTTTHHHCCHHHCHHH
T ss_pred             HHHHHHHHHhhcccccchHHHHHhhhhhhhhhhhhhhhhcc-chhhhhhh------hhhcccCCccceeeeeeeeeeccc
Confidence            55555555544443322211111000000000000001111 11111110      000100 12345566777777778


Q ss_pred             HHHHHHHHHhhhcccchhhhhhhhcccccccc-cccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHH
Q 008450          319 IWATTIIFWTTYAQMITFSVEQATTMERSIGR-FQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMA  397 (565)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~  397 (565)
                      .+...+.+.+...+.......+...++....+ +.+|+.+++.++.+..++..|+.++++.|+.++ .+  ..+...++.
T Consensus       216 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~--~~~~~~k~~  292 (372)
T PF00854_consen  216 IFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GI--QPSPPQKFG  292 (372)
T ss_dssp             CCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT---------HHHHH
T ss_pred             cCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-cc--cchhhhhhh
Confidence            88888888888888877777777777766777 899999999999999999999999999999883 22  578888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHH
Q 008450          398 IGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFL  477 (565)
Q Consensus       398 ~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~  477 (565)
                      +|++++.+++.+....+..+....+.++      ..+..|.+..++++.++|.+..+...+...|.+|++..+..+|+++
T Consensus       293 ~G~~~~~~~~~~~~~v~~~r~~~~~~~~------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~  366 (372)
T PF00854_consen  293 IGMVFAILAMFVAAIVEIRRLCYAQPCG------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWF  366 (372)
T ss_dssp             HH-HHHHHHHHTTTHHHH---HH----T------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccccC------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHH
Confidence            9999999999988877664443333222      4555777899999999999999999998888888877777777776


Q ss_pred             HHHH
Q 008450          478 TTLS  481 (565)
Q Consensus       478 ~~~~  481 (565)
                      ....
T Consensus       367 ~~~~  370 (372)
T PF00854_consen  367 ALSA  370 (372)
T ss_dssp             HHH-
T ss_pred             HHhc
Confidence            5543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.87  E-value=1.1e-19  Score=218.03  Aligned_cols=354  Identities=12%  Similarity=0.077  Sum_probs=217.2

Q ss_pred             hhHHHHHHHhHHHHHHHHHHhhhcCCCCc--hhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHH
Q 008450           22 GIELCERLSTMGIAVNLVTYLVGTMHLPS--ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGML   99 (565)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~   99 (565)
                      ..+++..+...+....+.+++..+++.+.  ...+++.+++.++..++.+++|+++||+ |||++++++.++.+++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~~~~~~~   94 (1146)
T PRK08633         16 LTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEVGLTLLI   94 (1146)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHHHHHHHH
Confidence            35666666655666666677766666654  4468999999999999999999999999 99999999988777766665


Q ss_pred             HHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHH
Q 008450          100 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  179 (565)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (565)
                      .+....+                     +++.++++|+++|++.+...++..+++.|++|+++      |++++++...+
T Consensus        95 ~~~~~~~---------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~  147 (1146)
T PRK08633         95 VLAYYLG---------------------WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAF  147 (1146)
T ss_pred             HHHHHHc---------------------cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHH
Confidence            5442212                     37889999999999999999999999999999998      99999999999


Q ss_pred             HHHHHHHHHHHHHHhccc--------c-cchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhcc
Q 008450          180 ISLGTLMAVTVLVYIQDE--------I-SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRK  250 (565)
Q Consensus       180 ~~lg~~lg~~i~g~l~~~--------~-gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (565)
                      .++|.++|+.+++++.+.        + +|.+.+.+..+...+..++..+..++.+...+.......             
T Consensus       148 ~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  214 (1146)
T PRK08633        148 TIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKK-------------  214 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccc-------------
Confidence            999999999999998775        2 344444333332222222222222221111000000000             


Q ss_pred             ccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhH-HHHHHHHHHHHhh
Q 008450          251 MDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARL-LPIWATTIIFWTT  329 (565)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  329 (565)
                                           ........+..                      ..+...+.+... +............
T Consensus       215 ---------------------~~~~~~~~~~~----------------------~~l~~~~~~~~~~~~~~~~~~~~~~~  251 (1146)
T PRK08633        215 ---------------------YLFPKLLWRNL----------------------KLLRSDRVLWLAIIGLSYFWFISQLA  251 (1146)
T ss_pred             ---------------------cccHHHHHHHH----------------------HHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence                                 00000000000                      000011111111 1111111111111


Q ss_pred             hcccchhhhhhhhccccccccccc-CcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHH
Q 008450          330 YAQMITFSVEQATTMERSIGRFQI-PAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMA  408 (565)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~  408 (565)
                      ...++ .+.......+      .. ..+++.....+..++...+.+++.++..++          ..+.++.++.+++++
T Consensus       252 ~~~~~-~~~~~~~g~s------~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~----------~~~~~~~~~~~~~~~  314 (1146)
T PRK08633        252 QANFP-AYAKEVLGLD------NTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL----------GLVPLGALGLALSLF  314 (1146)
T ss_pred             HHhhH-HHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc----------cchhHHHHHHHHHHH
Confidence            11111 1211111111      11 123344445555556666666665443332          224556666666655


Q ss_pred             HHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhh
Q 008450          409 AAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSS  488 (565)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~  488 (565)
                      .+.+.                   .+.+++++..++.+++.++..+..++++.+.+|++.||+++|+.++...+|..+++
T Consensus       315 ~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~  375 (1146)
T PRK08633        315 LLPTA-------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFL  375 (1146)
T ss_pred             HHHHh-------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHH
Confidence            55432                   24455667788889999888889999999999999999999999999999998887


Q ss_pred             HHhhhhh
Q 008450          489 FLVAVVK  495 (565)
Q Consensus       489 ~l~~~l~  495 (565)
                      .+.+.+.
T Consensus       376 ~~~~~l~  382 (1146)
T PRK08633        376 ALTTLFS  382 (1146)
T ss_pred             HHHHHHH
Confidence            7776553

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.5e-21  Score=201.06  Aligned_cols=151  Identities=14%  Similarity=0.185  Sum_probs=139.2

Q ss_pred             hhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccc
Q 008450           42 LVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTC  121 (565)
Q Consensus        42 l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  121 (565)
                      ++..+|.+++..|++.+.+.+...+..|+.|+|+||+ .||+++.+|..++.++.++++++.                  
T Consensus        59 v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~~Av~~~~fs~------------------  119 (493)
T KOG1330|consen   59 VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWTLAVFASGFSN------------------  119 (493)
T ss_pred             HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHHHHHHHHHHHH------------------
Confidence            3446899999999999999999999999999999999 999999999999999999999983                  


Q ss_pred             cCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccccc-c
Q 008450          122 EQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEIS-R  200 (565)
Q Consensus       122 ~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~g-w  200 (565)
                            .++++.++|.+.|+|.+.+.|.++++++|.+|+.+      |++.++++|+.+++|..+|.+++.++....+ |
T Consensus       120 ------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W  187 (493)
T KOG1330|consen  120 ------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW  187 (493)
T ss_pred             ------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence                  49999999999999999999999999999999999      9999999999999999999999999988777 9


Q ss_pred             hhhHHHHHHHHHHHHHHHHhccc
Q 008450          201 SVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       201 ~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      ||.|+..+++.+++.++.++..+
T Consensus       188 r~af~~~avl~vi~~~L~~~f~~  210 (493)
T KOG1330|consen  188 RWAFRGSAVLGVIVGLLVFLFVR  210 (493)
T ss_pred             EEEEEeehHHHHHHHHHHHhhcc
Confidence            99999999888777666555443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.86  E-value=1.2e-19  Score=193.70  Aligned_cols=377  Identities=13%  Similarity=0.023  Sum_probs=233.0

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhh-cCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVG-TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAM  101 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~  101 (565)
                      ..+.-.+..+.+.+.+.+.+.+ ++|+|..|.+++.+++.++..+++++.|++.||+ |.|+++.++.++..+.+++.++
T Consensus        41 ~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~~~~~~~  119 (462)
T PRK15034         41 SCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIPCVWLGI  119 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHH
Confidence            4455555666666777777765 8999999999999999999999999999999999 9999999999999999988887


Q ss_pred             HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHH
Q 008450          102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS  181 (565)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (565)
                      +..-+                   ..+++.+++.|++.|++ |+..+.....+++++|+++      ||+++++.....|
T Consensus       120 a~~~~-------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~  173 (462)
T PRK15034        120 AVQNP-------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGN  173 (462)
T ss_pred             HHccc-------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHh
Confidence            51100                   02488899999999998 7788999999999999999      9999999976667


Q ss_pred             HHHHHHHHHHHHhc-----c-------------cccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHH
Q 008450          182 LGTLMAVTVLVYIQ-----D-------------EISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIV  243 (565)
Q Consensus       182 lg~~lg~~i~g~l~-----~-------------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (565)
                      +|..+++.+...+.     .             ..+||.++++..+..+++.++.++..+..+   +++...++..    
T Consensus       174 ~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~---~~~~~~~~~~----  246 (462)
T PRK15034        174 LGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIA---SSRASIADQL----  246 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---ccccCHHHHH----
Confidence            77766555444322     1             334777776666665555555554432211   1111111110    


Q ss_pred             HHHHhccccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHH
Q 008450          244 AAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATT  323 (565)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (565)
                      ..+                                                             ++++.....+..+...
T Consensus       247 ~vl-------------------------------------------------------------k~~~~Wllslly~~tF  265 (462)
T PRK15034        247 PVL-------------------------------------------------------------QRLHLWLLSLLYLATF  265 (462)
T ss_pred             HHh-------------------------------------------------------------CCCchhHHHHHHHHHH
Confidence            011                                                             1111111111111111


Q ss_pred             HHHHhhhcccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHH
Q 008450          324 IIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLS  403 (565)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~  403 (565)
                      ..+......++.+...+   .+      .........+..+...+..|+.+++.||+.++          +.+.++.+.+
T Consensus       266 G~fvg~s~~lp~~~~~~---~~------~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~----------~vl~~~~i~~  326 (462)
T PRK15034        266 GSFIGFSAGFAMLAKTQ---FP------DVNILRLAFFGPFIGAIARSVGGAISDKFGGV----------RVTLINFIFM  326 (462)
T ss_pred             HHHHHHHHHHHHHHHHH---cC------hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch----------HHHHHHHHHH
Confidence            12211211222221111   11      00111112233455667778888888876665          2245555555


Q ss_pred             HHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCc-----------------
Q 008450          404 IVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK-----------------  466 (565)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~-----------------  466 (565)
                      .++..........             +...+.+.....++...++.++.+...+.++.+.+|+                 
T Consensus       327 ~i~~~~~~l~lp~-------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~  393 (462)
T PRK15034        327 AIFSALLFLTLPG-------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQ  393 (462)
T ss_pred             HHHHHHHHHHhcc-------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHh
Confidence            5544332222110             0012333444444555555566666666677667764                 


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 008450          467 ----GMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWY  541 (565)
Q Consensus       467 ----~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~  541 (565)
                          +..|.++|+......+|+++-|.+.+.....+               +.+...|+.+.+..+++.++.|.++.|+
T Consensus       394 ~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~---------------g~~~~~~~~~~~~~~~~~~~~w~~y~r~  457 (462)
T PRK15034        394 REAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT---------------GSPVGAMKVFLIFYIVCVLLTWLVYGRR  457 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc---------------CCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                25778888888888999999898877765332               1245668899999999999988887664

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.86  E-value=2.9e-19  Score=188.79  Aligned_cols=337  Identities=10%  Similarity=0.015  Sum_probs=204.9

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchh----HHHHHHHHHHHHHHHH
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYK----TIAIFAAVQTLGTGML   99 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~----~~~~~~~~~~~~~~~~   99 (565)
                      .++..+++..+.+.++.|++ ++|.|..++|++.+++.+...++.+++|+++||+ ||++    .+.++..+.  .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHHH
Confidence            45555555566677888885 6899999999999999999999999999999999 9843    222221111  11111


Q ss_pred             HHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHH
Q 008450          100 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  179 (565)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (565)
                      ...                        .+.+.+++.|++.|++.+...|...++..|+  .++      |+++++..+..
T Consensus        89 ~~~------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~  136 (382)
T PRK11128         89 FGA------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLW  136 (382)
T ss_pred             Hhc------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHH
Confidence            111                        1378888999999999999999888888776  334      78889999999


Q ss_pred             HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCc
Q 008450          180 ISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGM  259 (565)
Q Consensus       180 ~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (565)
                      .++|.++||.+++++.+++|||..|++.++..++..+.. +..++   ++|++++.++                 .    
T Consensus       137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~-----------------~----  191 (382)
T PRK11128        137 GSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQ-LLRPT---IMPQGESRQQ-----------------E----  191 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HccCC---CCCccccccc-----------------c----
Confidence            999999999999999999999999988775544433322 22221   1111100000                 0    


Q ss_pred             cccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhh
Q 008450          260 LYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVE  339 (565)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (565)
                                  .....++                         .+..++++........+.....+....... ..+..
T Consensus       192 ------------~~~~~~~-------------------------~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~  233 (382)
T PRK11128        192 ------------SAGWPAW-------------------------KALLKEPTVWRFLLCVSLLQGSHAAYYGFS-AIYWQ  233 (382)
T ss_pred             ------------ccccchH-------------------------HHHHcChhHHHHHHHHHHHHHHhHhHHHHH-HHHHH
Confidence                        0000000                         000112222211111122222211111111 12221


Q ss_pred             hhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008450          340 QATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLS  419 (565)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~  419 (565)
                      + .+.+      ....+.+..+..+..++...+.+++.+|..          ..+.+..+.++..+++..+...      
T Consensus       234 ~-~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~----------~~~~l~~~~~~~~~~~~~~~~~------  290 (382)
T PRK11128        234 A-AGYS------ASTIGYLWSLGVVAEVLIFAFSNRLFRRWS----------ARDLLLLSAICGVVRWGLMGST------  290 (382)
T ss_pred             H-CCCC------HhHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHHHHHHHhh------
Confidence            1 1111      111223333444444444455555543332          3344667777777776655442      


Q ss_pred             hhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHH-HHHHHHHHHhhHHhhhhhh
Q 008450          420 VARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFL-TTLSLGFFVSSFLVAVVKK  496 (565)
Q Consensus       420 ~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~ig~~l~~~l~~  496 (565)
                                   .+++.+++..++.+++++...+....+..+. |++.+++..++.+ ....+|..+|+.+.|.+.+
T Consensus       291 -------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        291 -------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             -------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         2455567788889999999899999988887 5555789999887 5457788999999998864

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.86  E-value=3e-19  Score=189.49  Aligned_cols=383  Identities=9%  Similarity=0.041  Sum_probs=228.5

Q ss_pred             hhHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHH
Q 008450           22 GIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAM  101 (565)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~  101 (565)
                      ..+++...++....+.++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+.++.+.....++......
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~   87 (396)
T TIGR00882         9 LFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVLFAPFFI   87 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHH
Confidence            356677777777888999999999999999999999999999999999999999999 9999998877766554433221


Q ss_pred             HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHH
Q 008450          102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS  181 (565)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (565)
                      ....+..                .......+.+++++.|++.+...+....+..|..  ++      ++..++......+
T Consensus        88 ~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~------~~~~~g~~~~~~~  143 (396)
T TIGR00882        88 YVFGPLL----------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RN------SNFEYGKARMFGC  143 (396)
T ss_pred             HHhhhHH----------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hh------cccccchhhhhcc
Confidence            1000100                0001334567788889998888888877776642  22      4456777888889


Q ss_pred             HHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccc
Q 008450          182 LGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLY  261 (565)
Q Consensus       182 lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (565)
                      +|.++||.++|.+.+ .+|+.+|++.+++.++..++.+...++    +|++++..+            ..+ ...     
T Consensus       144 ~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------------~~~-~~~-----  200 (396)
T TIGR00882       144 VGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPK----APSSATVAN------------ALG-ANA-----  200 (396)
T ss_pred             cHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCC----Cchhhhhhc------------ccc-ccc-----
Confidence            999999999998865 699999998877766554444332221    111000000            000 000     


Q ss_pred             cCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhh
Q 008450          262 EDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQA  341 (565)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (565)
                                ..++.+  +..                      +..++++........+.....+.....+. ..+....
T Consensus       201 ----------~~~~~~--~~~----------------------~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-~~y~~~~  245 (396)
T TIGR00882       201 ----------SAFSLK--LAL----------------------ELFRQRKFWMFVLYVVGVACVYDVFDQQF-ANFFTSF  245 (396)
T ss_pred             ----------CCCCHH--HHH----------------------HHHcCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence                      000000  000                      00112221111111111111111111111 1221111


Q ss_pred             hcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008450          342 TTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVA  421 (565)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~  421 (565)
                        .... +......+....+..+...+.....+++.|++.+|          +.+.++.++.++++.....         
T Consensus       246 --~~~~-~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~----------~~l~~~~~l~~l~~~~~~~---------  303 (396)
T TIGR00882       246 --FATP-QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK----------NALLIAGTIMSVRIIGSSF---------  303 (396)
T ss_pred             --cccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------hhHHHHHHHHHHHHHHHHh---------
Confidence              1100 00000112334444455555556666665555544          2256666666666655433         


Q ss_pred             hhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHH-HHHHHHHHHHHhhHHhhhhhhcccC
Q 008450          422 RAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL-FLTTLSLGFFVSSFLVAVVKKVTGS  500 (565)
Q Consensus       422 ~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~lg~~ig~~l~~~l~~~~~~  500 (565)
                                ..+.+++.+..++.+++..........+..+..|++.+++..+. ++....+|+.+++.+.+.+.+..  
T Consensus       304 ----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~--  371 (396)
T TIGR00882       304 ----------ATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI--  371 (396)
T ss_pred             ----------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc--
Confidence                      23455566677888888777766777788888899999887776 67888999999999999886421  


Q ss_pred             CCCCCccccccccchhhHHHHHHHHHHHHHHHHHh
Q 008450          501 KGGGGWLADNINRGRLDLFYGLLAILSIINLVIYL  535 (565)
Q Consensus       501 ~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~  535 (565)
                                    ++...|.+.+++.++..++..
T Consensus       372 --------------G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       372 --------------GFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             --------------ccHHHHHHHHHHHHHHHHHHH
Confidence                          145677777777777666543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.86  E-value=1.2e-19  Score=194.53  Aligned_cols=356  Identities=13%  Similarity=0.105  Sum_probs=222.6

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcc---ccchh-HHHHHHHHHHHHHHHH
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF---LGRYK-TIAIFAAVQTLGTGML   99 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~~~~~~~~~~~~~~~~   99 (565)
                      ++..+..+..+..++++|+++++|+++.++|++.+...+...+..|+.|+++||.   +|||| .++++....+++.+++
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792         8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            4555666667778899999999999999999999999999999999999999983   27754 5667778888887777


Q ss_pred             HHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHH
Q 008450          100 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  179 (565)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (565)
                      .+..+.+                  .......+++.+++.+++.+.......++..|..++.++     |+++.++....
T Consensus        88 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----R~~~~~~~~~~  144 (437)
T TIGR00792        88 FTTPDFS------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE-----RESLSTFRRFG  144 (437)
T ss_pred             HhCCCCC------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH-----HHHHHHHHHHH
Confidence            6652111                  112356677788888999988888888899988754332     88888888888


Q ss_pred             HHHHHHHHHHHHHHhc-------ccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhcccc
Q 008450          180 ISLGTLMAVTVLVYIQ-------DEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMD  252 (565)
Q Consensus       180 ~~lg~~lg~~i~g~l~-------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (565)
                      .++|.+++..+.+.+.       +..+|++.+.+.+++.++..++.+...++.++++++.++                  
T Consensus       145 ~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~------------------  206 (437)
T TIGR00792       145 ATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE------------------  206 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc------------------
Confidence            8888777766655443       246899999888777665554444433321111010000                  


Q ss_pred             CCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcc
Q 008450          253 LPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQ  332 (565)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (565)
                                           ++.+..+..                      +.....|.+...................
T Consensus       207 ---------------------~~~~~~~~~----------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~  243 (437)
T TIGR00792       207 ---------------------KKLSLKQIF----------------------KALFKNDQLLILCLAYLFYNLAFNIKNG  243 (437)
T ss_pred             ---------------------cCCCHHHHH----------------------HHHhCCHHHHHHHHHHHHHHHHHHHHcc
Confidence                                 000000000                      0011112222111111111111111111


Q ss_pred             cchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 008450          333 MITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL  412 (565)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~  412 (565)
                      ....+...      ..+ .....+.+..+..+..++..++.+++.+++.+|          +.+..+.++..++++.+.+
T Consensus       244 ~~~~~~~~------~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~----------~~~~~~~~~~~~~~~~~~~  306 (437)
T TIGR00792       244 VQVYYFTY------VLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK----------ILFAGGILLMVLGYLIFFF  306 (437)
T ss_pred             hhheeEee------ecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHHHHH
Confidence            11111111      000 011122334445666667777777776655543          3356677777776665543


Q ss_pred             HHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCC-------chhhHHHHHHHHHHHHHHHH
Q 008450          413 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP-------KGMKTMSTGLFLTTLSLGFF  485 (565)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gl~~~~~~lg~~  485 (565)
                      .                  ..+.+..++..++.+++.+...+..++++.|..|       ++.+|++.|++++...+|..
T Consensus       307 ~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~  368 (437)
T TIGR00792       307 A------------------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQA  368 (437)
T ss_pred             c------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHH
Confidence            2                  1123345566777888888888888999888865       56789999999999999999


Q ss_pred             HhhHHhhhhhhcc
Q 008450          486 VSSFLVAVVKKVT  498 (565)
Q Consensus       486 ig~~l~~~l~~~~  498 (565)
                      +++.+.+.+.+..
T Consensus       369 lg~~i~g~ll~~~  381 (437)
T TIGR00792       369 LAGFLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999886543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.86  E-value=1e-19  Score=190.94  Aligned_cols=342  Identities=12%  Similarity=0.098  Sum_probs=201.6

Q ss_pred             HHHHHhhhcCC--CCchhhhhHHHH--H---HHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccC
Q 008450           37 NLVTYLVGTMH--LPSATSANIVTD--F---MGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLR  109 (565)
Q Consensus        37 ~l~~yl~~~l~--~s~~~~~~~~~~--~---~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~  109 (565)
                      ...+++.++..  .++++.+.+.+.  +   .++..+++++.|+++||+ |||+++.++.++..++.++++++.+.+.  
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~--   90 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT--   90 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh--
Confidence            44555555543  445666555543  2   233356889999999999 9999999999999999999988743221  


Q ss_pred             CCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHH
Q 008450          110 PRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVT  189 (565)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~  189 (565)
                                    ........++++|+++|++.+...+..+.++.|++|+++      |++..++......+|.++++.
T Consensus        91 --------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~  150 (394)
T TIGR00883        91 --------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAAL  150 (394)
T ss_pred             --------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHH
Confidence                          111223468899999999999999999999999999998      999999999999999999988


Q ss_pred             HHHHhc--------ccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccc
Q 008450          190 VLVYIQ--------DEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLY  261 (565)
Q Consensus       190 i~g~l~--------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (565)
                      +++.+.        +.++||+.|.+.+++.+++.+..... ++    +++.++ .          +++ .+   .     
T Consensus       151 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~-~----------~~~-~~---~-----  205 (394)
T TIGR00883       151 TVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNL-EE----TPVFEK-A----------QEK-HK---K-----  205 (394)
T ss_pred             HHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhc-CC----ChhHHH-H----------Hhc-cc---c-----
Confidence            876653        35789999988776655443332221 11    110000 0          000 00   0     


Q ss_pred             cCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHh-HHHhHHHHH-HHHHHHHhhhcccchhhhh
Q 008450          262 EDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVK-MVARLLPIW-ATTIIFWTTYAQMITFSVE  339 (565)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  339 (565)
                                  .                     +.++    .+..++++ .+....... ......... ....+.+..
T Consensus       206 ------------~---------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  247 (394)
T TIGR00883       206 ------------K---------------------RGPI----RETLTKHRKPFLLGLGLVIATTTTFYLI-TTYLPTYLT  247 (394)
T ss_pred             ------------c---------------------cCCH----HHHHHhchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence                        0                     0000    00011111 121111111 111111111 111112221


Q ss_pred             hhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHH-HHHHHHHHHHHHHHHHHHHHh
Q 008450          340 QATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMA-IGLVLSIVGMAAAALVERKRL  418 (565)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~-~G~~l~~~~~~~~~~~~~~~~  418 (565)
                      +....+      ....+.......+...+..++.+++.||+.+|.          .+. .+.+....++........   
T Consensus       248 ~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~----------~~~~~~~~~~~~~~~~~~~~~~---  308 (394)
T TIGR00883       248 QTLGLS------ANSALLVLMLSLILFFITIPLSGALSDRIGRRP----------VLIIFTVLAALLAVPLLMALLD---  308 (394)
T ss_pred             HhcCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH----------HHHHHHHHHHHHHHHHHHHHhc---
Confidence            111111      111223344455566666777777766655441          122 222222222222211110   


Q ss_pred             hhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHH-HHHHHHHHHHHhhHHhhhhhh
Q 008450          419 SVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL-FLTTLSLGFFVSSFLVAVVKK  496 (565)
Q Consensus       419 ~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~lg~~ig~~l~~~l~~  496 (565)
                                   ..+.+..+...++.+++.....+..++++.|.+|++.|+++.++ +++.+.+|..++|.+.+.+.+
T Consensus       309 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~  374 (394)
T TIGR00883       309 -------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA  374 (394)
T ss_pred             -------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence                         12344455666777888878888899999999999999999998 456667888899999998864

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.86  E-value=8.2e-20  Score=187.07  Aligned_cols=390  Identities=17%  Similarity=0.077  Sum_probs=263.7

Q ss_pred             CCCCCCchhhHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHH
Q 008450           14 SPADPSKTGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT   93 (565)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~   93 (565)
                      +++-+.-+...+.-.++.|.+.+.+.+++.+++|+|+.|.++++..-.+...+.+++-|.+.||| |.|++..++.++..
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~~   90 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLLL   90 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHHH
Confidence            44444445566777788888999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhccee
Q 008450           94 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  173 (565)
Q Consensus        94 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (565)
                      +-++..+++.+.|+                     .+.+++.+++.|++ |+.+++..++++.++|+++      +|.+.
T Consensus        91 IP~~~~~~a~~~~~---------------------~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~------qG~Al  142 (417)
T COG2223          91 IPCLGLAFAVTYPS---------------------TWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK------QGLAL  142 (417)
T ss_pred             HHHHHHHHHccCCc---------------------hHHHHHHHHHHhcc-cceehcccccccccCChhh------hhHHH
Confidence            99999999865444                     57899999999998 5566888999999999999      99999


Q ss_pred             ehhhHHHHHHHHHHHHHHHHhccccc---chhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhcc
Q 008450          174 SRFFFFISLGTLMAVTVLVYIQDEIS---RSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRK  250 (565)
Q Consensus       174 ~~~~~~~~lg~~lg~~i~g~l~~~~g---w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (565)
                      +++. ..|+|..+...++.++....+   |+.+..+..+..+++.+..++..+..++++++..+...  .          
T Consensus       143 GI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~----------  209 (417)
T COG2223         143 GIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--A----------  209 (417)
T ss_pred             HHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--h----------
Confidence            9999 889999999999999888888   99999888887777666666655443332222111110  0          


Q ss_pred             ccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHH-HHHHHHHhh
Q 008450          251 MDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIW-ATTIIFWTT  329 (565)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  329 (565)
                                                                          ..+.+..++....+..+. .....+...
T Consensus       210 ----------------------------------------------------~~~~v~~~~~~W~lsllY~~tFG~Fvgf  237 (417)
T COG2223         210 ----------------------------------------------------QLKAVFSNKDTWLLSLLYFATFGGFVGF  237 (417)
T ss_pred             ----------------------------------------------------HHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence                                                                000001011111111111 111111122


Q ss_pred             hcccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHH
Q 008450          330 YAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAA  409 (565)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~  409 (565)
                      ..+++.++..+.   ...    ....+...........+.-|+.+++.||+..+          +...+.+..++++...
T Consensus       238 s~~l~~~~~~~f---g~~----~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~----------rv~~~~f~~~~~~~~~  300 (417)
T COG2223         238 SAYLPMYLVTQF---GLS----PVTAGLIAFLFPLIGALARPLGGWLSDRIGGR----------RVTLAVFVGMALAAAL  300 (417)
T ss_pred             HHHHHHHHHHhc---CCC----hhhHHHHHHHHHHHHHHHHhccchhhhhccch----------hHHHHHHHHHHHHHHH
Confidence            222222222221   111    12233444445555556666666666665554          4466677777777766


Q ss_pred             HHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhH
Q 008450          410 AALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSF  489 (565)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~  489 (565)
                      +.+....            .+...+....+..++...+..++-+...+.++...+|+ +.|...|+...+..+|++.-|.
T Consensus       301 l~~~~~~------------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~  367 (417)
T COG2223         301 LSLFLTG------------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPL  367 (417)
T ss_pred             HHccccc------------cccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhH
Confidence            6654211            00012333344444555555555556666677767765 5888999999999999988888


Q ss_pred             HhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 008450          490 LVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYK  542 (565)
Q Consensus       490 l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~  542 (565)
                      ..+...+.++               .+...|+++..+.+++.+..+..+.+.+
T Consensus       368 ~~g~~~~~tg---------------~~~~~f~~~~~~~~~a~v~~~~~y~r~~  405 (417)
T COG2223         368 AFGVSLDLTG---------------SYTGAFMLLLAFYLVALVLTWALYARRR  405 (417)
T ss_pred             HHHHHHHhcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8887764332               2466789999999999998888876643

>PRK10133 L-fucose transporter; Provisional

Probab=99.86  E-value=1.1e-18  Score=187.91  Aligned_cols=131  Identities=18%  Similarity=0.219  Sum_probs=112.1

Q ss_pred             HHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008450           37 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  116 (565)
Q Consensus        37 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (565)
                      .+.+.+++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..++.++.++++++.....-+          
T Consensus        47 ~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~~~~~~a~----------  115 (438)
T PRK10133         47 ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEIM----------  115 (438)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhcC----------
Confidence            345566889999999999999999999999999999999999 999999999999999998864321102          


Q ss_pred             CcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhc
Q 008450          117 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  195 (565)
Q Consensus       117 ~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~  195 (565)
                                 ++..++++|+++|+|.|...+..++++.|+.|+++      |...++.......+|..+|+.+++.+.
T Consensus       116 -----------~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        116 -----------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             -----------CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       37889999999999999999999999999766655      666688888889999999998887654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.85  E-value=1.7e-19  Score=188.51  Aligned_cols=158  Identities=16%  Similarity=0.124  Sum_probs=129.2

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVT  103 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~  103 (565)
                      .++....++...+.++.++++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++++++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~~~~~~~   88 (366)
T TIGR00886        10 FFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPCLWAGLAV   88 (366)
T ss_pred             HHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHh
Confidence            3444445555555555579999999999999999999999999999999999999 999999999999999999988873


Q ss_pred             hhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHH
Q 008450          104 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLG  183 (565)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg  183 (565)
                      .                       +++.++++|+++|++.+.. +...++++|++|+++      |+++.++.....++|
T Consensus        89 ~-----------------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g  138 (366)
T TIGR00886        89 Q-----------------------SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMG  138 (366)
T ss_pred             h-----------------------hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHH
Confidence            0                       2777899999999996654 667899999999988      999999999888888


Q ss_pred             HHHHHHHHHHhcc----------cccchhhHHH-HHHHHH
Q 008450          184 TLMAVTVLVYIQD----------EISRSVGYGI-CSVAMF  212 (565)
Q Consensus       184 ~~lg~~i~g~l~~----------~~gw~~~f~i-~~~~~~  212 (565)
                      ..+++.+++.+..          ..+||+.|++ .++...
T Consensus       139 ~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  178 (366)
T TIGR00886       139 GGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL  178 (366)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence            8888877776554          3489999944 344433

>TIGR00896 CynX cyanate transporter

Probab=99.85  E-value=2.5e-19  Score=187.05  Aligned_cols=331  Identities=12%  Similarity=0.111  Sum_probs=211.1

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      +.......+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+.+ ..   +     
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~---~-----   85 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA---P-----   85 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh---c-----
Confidence            34445556677889999999999999999999999999999999999 99999999988888777665 33   2     


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                      +.+.+++.|++.|+|.+...+..+.++.|.+| ++      |++++++++...++|..+++.++
T Consensus        86 ----------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~  142 (355)
T TIGR00896        86 ----------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAAT  142 (355)
T ss_pred             ----------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHH
Confidence                            26778899999999999988888888888886 45      99999999999999999999999


Q ss_pred             HHhcccc--cchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccc
Q 008450          192 VYIQDEI--SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASR  269 (565)
Q Consensus       192 g~l~~~~--gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (565)
                      +.+.+..  +||+.|.+.++..++......   ++.++++++..+.                    .             
T Consensus       143 ~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------------------~-------------  186 (355)
T TIGR00896       143 VPLAQHSGGHWQQALAWWALPALLALLAWI---PQVRRRVAANQTT--------------------T-------------  186 (355)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHh---hhhccccCCCCCC--------------------C-------------
Confidence            9887765  399998876654433322211   1111111000000                    0             


Q ss_pred             cCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhccccccc
Q 008450          270 IHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG  349 (565)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (565)
                                                +..+    .+..++++..............++....+++ .+... ...+    
T Consensus       187 --------------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-~~~~~-~g~~----  230 (355)
T TIGR00896       187 --------------------------RLTP----VRIWRSPLAWQVTVFFGLQSGLYYSLIGWLP-AILIS-HGAS----  230 (355)
T ss_pred             --------------------------CCCC----chhhcCHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-cCCC----
Confidence                                      0000    0001111111111111111111222111121 12111 1111    


Q ss_pred             ccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCC
Q 008450          350 RFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTA  429 (565)
Q Consensus       350 ~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (565)
                        ....+.......+..++..++.+++.||+.+|         ++.+.++.++..++...+.+..               
T Consensus       231 --~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~---------~~~~~~~~~~~~~~~~~~~~~~---------------  284 (355)
T TIGR00896       231 --AATAGSLLALMQLAQAASALLIPALARRVKDQ---------RGIVAVLAVLQLVGLCGLLFAP---------------  284 (355)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc---------hHHHHHHHHHHHHHHHHHHHhh---------------
Confidence              11233445555666677777777776654322         1234566666666666554431               


Q ss_pred             CcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccC-CchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcc
Q 008450          430 TLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKS-PKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVT  498 (565)
Q Consensus       430 ~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~  498 (565)
                         ...  .....++.+++.+..+|...+.+.+.. +++.++..+++.+....++..++|.+.+.+.+.+
T Consensus       285 ---~~~--~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       285 ---MHG--LWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             ---hhH--HHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               111  112356778898888888777766554 4577899999999888999999999999886543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.84  E-value=3.9e-18  Score=182.01  Aligned_cols=157  Identities=13%  Similarity=0.190  Sum_probs=134.6

Q ss_pred             HHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           33 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      ++...+.+.+++++|++..|.+++.+.+.++..+++++.|++.||+ |||+++.+++++++++.+++..+...+      
T Consensus        20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~~~~~~~~------   92 (410)
T TIGR00885        20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLFWPAAEIM------   92 (410)
T ss_pred             HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHhhc------
Confidence            4556677888999999999999999999999999999999999999 999999999999999988876552212      


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                                     +++.++++|++.|+|.|...+..++++.+..|+++      |++..++.+...++|..+||.+++
T Consensus        93 ---------------~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~  151 (410)
T TIGR00885        93 ---------------NYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQ  151 (410)
T ss_pred             ---------------cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           37889999999999999999999999999998887      888899999999999999999988


Q ss_pred             Hhcc--------------------------cccchhhHHHHHHHHHHHHHH
Q 008450          193 YIQD--------------------------EISRSVGYGICSVAMFMAIII  217 (565)
Q Consensus       193 ~l~~--------------------------~~gw~~~f~i~~~~~~~~~~~  217 (565)
                      .+..                          ..+||++|.+.+++.++..++
T Consensus       152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       152 QLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7742                          246999998877765544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.84  E-value=1.3e-18  Score=191.07  Aligned_cols=422  Identities=12%  Similarity=0.124  Sum_probs=240.7

Q ss_pred             HHHHHHHHHhhhcC-----CCCc--hhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008450           33 GIAVNLVTYLVGTM-----HLPS--ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKL  105 (565)
Q Consensus        33 ~~~~~l~~yl~~~l-----~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~  105 (565)
                      +..+.+..++.+..     ..+.  .+.+|+.+.+.++..++++++|+++|++ |||++++++.+++.+|.++++++.+ 
T Consensus        64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~~-  141 (513)
T KOG0254|consen   64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAPS-  141 (513)
T ss_pred             ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhh-
Confidence            56666666666532     1112  3458999999999999999999999999 9999999999999999999999943 


Q ss_pred             cccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHH
Q 008450          106 RQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTL  185 (565)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  185 (565)
                                             ...+.++|+++|+|.|+.....+.+++|..|.+.      ||...+.++...++|..
T Consensus       142 -----------------------~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~  192 (513)
T KOG0254|consen  142 -----------------------WYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGIL  192 (513)
T ss_pred             -----------------------HHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHH
Confidence                                   8889999999999999999999999999999999      99999999999999999


Q ss_pred             HHHHHHHHhccc-ccchhhHHHHHHHHHHHHHHHHhc--cccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcccc
Q 008450          186 MAVTVLVYIQDE-ISRSVGYGICSVAMFMAIIIFLAG--TKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYE  262 (565)
Q Consensus       186 lg~~i~g~l~~~-~gw~~~f~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (565)
                      ++..++....+. ++||..+.+..+.+++..+.+++.  .|++..+..   ...+..+.+.....   .. +.+      
T Consensus       193 ~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g---~~~~a~~~l~~l~g---~~-~~~------  259 (513)
T KOG0254|consen  193 LGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG---RLEEAKRSLKRLRG---LS-PED------  259 (513)
T ss_pred             HHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC---ChHHHHHHHHHHhC---CC-Ccc------
Confidence            995544444332 489998888776665544443332  222211111   11111111111111   00 000      


Q ss_pred             CCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhh
Q 008450          263 DTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQAT  342 (565)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (565)
                               ..+....+. .....+...  .+....|.  ...+...+|+......+...+................+..
T Consensus       260 ---------~~~~~~~~~-~~~~~~~~~--~~~~~~~~--~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~  325 (513)
T KOG0254|consen  260 ---------VEVELELLK-IKLLVEAEV--AEGKASWG--ELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA  325 (513)
T ss_pred             ---------hHHHHHHHH-HHHHHhhhc--ccccccHH--HhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc
Confidence                     000000000 000000000  00000010  0000112222222222222222211111111111112211


Q ss_pred             cccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008450          343 TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVAR  422 (565)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~  422 (565)
                      ..+..       ......+..+...+...+...++|+++||          ..+..|...+.+++++++...........
T Consensus       326 g~~~~-------~~~~~~~~~~v~~~~t~~~~~lvd~~gRr----------~lll~s~~~m~~~~~~~~~~~~~~~~~~~  388 (513)
T KOG0254|consen  326 GLKSD-------TFLASIILGVVNFLGTLVATYLVDRFGRR----------KLLLFGAAGMSICLVILAVVGVFALYYPN  388 (513)
T ss_pred             CCCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHhccH----------HHHHHhHHHHHHHHHHHHHHHHHhccCCC
Confidence            11111       11122222222223333334555665665          34788888888888877755332110000


Q ss_pred             hcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCC
Q 008450          423 AVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKG  502 (565)
Q Consensus       423 ~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~  502 (565)
                      .      .....+..+....+..........|..+.+..|.+|.+.|+++.++...++++.+.+-...........+   
T Consensus       389 ~------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~---  459 (513)
T KOG0254|consen  389 S------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG---  459 (513)
T ss_pred             c------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence            0      0011122222233333334444457778899999999999999999999999888777666555432110   


Q ss_pred             CCCccccccccchhhHHHHHHHHHHHHHHH-HHhhhhhhcCCCCCccchh
Q 008450          503 GGGWLADNINRGRLDLFYGLLAILSIINLV-IYLICAVWYKPKKPKAGIQ  551 (565)
Q Consensus       503 ~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~-~~~~~~~~~~~~~~~~~~~  551 (565)
                                   ....|..+++++.+... ..+++.+|+|+++.++..+
T Consensus       460 -------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~  496 (513)
T KOG0254|consen  460 -------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE  496 (513)
T ss_pred             -------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence                         13456777777777777 6788899999988776543

>TIGR00901 2A0125 AmpG-related permease

Probab=99.83  E-value=2.4e-18  Score=179.70  Aligned_cols=160  Identities=13%  Similarity=0.135  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcc----ccchhHH-HHHHHHHHHHHHHHHHHhhhc
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF----LGRYKTI-AIFAAVQTLGTGMLAMVTKLR  106 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~~~-~~~~~~~~~~~~~~a~~~~~~  106 (565)
                      +++.....+.+.+++|+|.+|.+++... .+...+ .+++|+++||+    +||||.+ +.+.++.++...++++...  
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~--   79 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP--   79 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc--
Confidence            3455666666777899999999999655 444444 89999999997    3899875 5666667666666665521  


Q ss_pred             ccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHH
Q 008450          107 QLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLM  186 (565)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l  186 (565)
                                         ..+.+.+.+..++.+++.+...+...+++.|++|+++      |+++.++...+.++|.++
T Consensus        80 -------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~  134 (356)
T TIGR00901        80 -------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLL  134 (356)
T ss_pred             -------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHH
Confidence                               1246667777778888889899999999999999888      999999999999999999


Q ss_pred             HHHHHHHhccccc--------chhhHHHHHHHHHHHHHHHHh
Q 008450          187 AVTVLVYIQDEIS--------RSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       187 g~~i~g~l~~~~g--------w~~~f~i~~~~~~~~~~~~~~  220 (565)
                      ++.+++++....+        ||..|++.+++.+++.+..++
T Consensus       135 ~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901       135 SGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             HHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888        999999988776665555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.83  E-value=1.7e-17  Score=181.11  Aligned_cols=377  Identities=12%  Similarity=0.077  Sum_probs=224.6

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcc----ccchhH-HHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF----LGRYKT-IAIFAAVQTLGTG   97 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~~-~~~~~~~~~~~~~   97 (565)
                      ..+..-+..+.....++.+++ +.|.+..+++.+ +...... +..+++|+++||+    +||||. +.++.+...++..
T Consensus        20 l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~   96 (491)
T PRK11010         20 LGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIA   96 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHH
Confidence            334444555555566777765 569999999886 3333332 6899999999996    277775 6677777777777


Q ss_pred             HHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhh
Q 008450           98 MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  177 (565)
Q Consensus        98 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (565)
                      ++++..  |                   ..+.+.+.+.+++.+++.+...+...++..|++|+++      |+++.++..
T Consensus        97 ~~a~~~--~-------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~  149 (491)
T PRK11010         97 AMGFLE--P-------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISV  149 (491)
T ss_pred             HHHHcC--C-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHH
Confidence            776652  1                   1247788899999999999999999999999999888      999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCC
Q 008450          178 FFISLGTLMAVTVLVYIQD-EISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCN  256 (565)
Q Consensus       178 ~~~~lg~~lg~~i~g~l~~-~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (565)
                      .+.++|.++++.+++++.+ ..|||..|++.+++.++..+..+.. ++.++++++++...+                   
T Consensus       150 ~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~-~e~~~~~~~~~~~~~-------------------  209 (491)
T PRK11010        150 LGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA-PEPTDTIPVPKTLEQ-------------------  209 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCCccccccccchhh-------------------
Confidence            9999999999999999988 5799999999887666554443332 211000000000000                   


Q ss_pred             cCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchh
Q 008450          257 VGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITF  336 (565)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (565)
                                      ....++   .                      +..++++........+.............+ .
T Consensus       210 ----------------~~~~~l---~----------------------~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~-~  247 (491)
T PRK11010        210 ----------------AVVAPL---R----------------------DFFGRNNAWLILLLIVLYKLGDAFAMSLTT-T  247 (491)
T ss_pred             ----------------hHHHHH---H----------------------HHHcCcCHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence                            000000   0                      000011111111111111111111111111 2


Q ss_pred             hhhhhhcccccccccccCcchhh-hhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008450          337 SVEQATTMERSIGRFQIPAGSLT-VFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVER  415 (565)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~  415 (565)
                      +..+..+.+..      ..+... ....+..++...+.+++.+|+.+|          +.+.++.++..++...+.....
T Consensus       248 ~l~~~~G~s~~------~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~----------~~l~i~~~l~~l~~l~~~~l~~  311 (491)
T PRK11010        248 FLIRGVGFDAG------EVGLVNKTLGLLATIVGALYGGILMQRLSLF----------RALMIFGILQGVSNAGYWLLSI  311 (491)
T ss_pred             HHHHhcCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHh
Confidence            22211111111      122222 233445566667777776666544          1233344443333322211110


Q ss_pred             HHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 008450          416 KRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK  495 (565)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~  495 (565)
                      .               ..+...+....++..+..++..+..+++..+..|++.+++..|+.+....+|..+++.+.+.+.
T Consensus       312 ~---------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~  376 (491)
T PRK11010        312 T---------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFV  376 (491)
T ss_pred             c---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0               1122333444555555555556667888888999999999999999999999998888888876


Q ss_pred             hcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhh
Q 008450          496 KVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICA  538 (565)
Q Consensus       496 ~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~  538 (565)
                      +..      |          +...|.+.+++++++++..+...
T Consensus       377 ~~~------G----------~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        377 EAH------G----------WPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHh------C----------hHHHHHHHHHHHHHHHHHHHHHH
Confidence            421      1          35678888888888877776653

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.81  E-value=7.4e-17  Score=171.59  Aligned_cols=163  Identities=12%  Similarity=0.081  Sum_probs=128.4

Q ss_pred             HHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccc----cch-hHHHHHHHHHHHHHHHH
Q 008450           25 LCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFL----GRY-KTIAIFAAVQTLGTGML   99 (565)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~----Grr-~~~~~~~~~~~~~~~~~   99 (565)
                      +.+-+.+.-....+|.|++ +.|++..|+|++......  .+..+++|+++||+.    ||| +.+.++.++.+++..++
T Consensus         9 ~~~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l   85 (402)
T PRK11902          9 FASGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM   85 (402)
T ss_pred             HHHhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence            3444444445566778876 569999999999766665  689999999999982    565 47888888888777777


Q ss_pred             HHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHH
Q 008450          100 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  179 (565)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (565)
                      ++...                     ..+.+.+++..++.++..+...+...+++.|++|+++      |+++.++...+
T Consensus        86 ~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g  138 (402)
T PRK11902         86 AFCPP---------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLG  138 (402)
T ss_pred             HhcCc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHH
Confidence            66521                     1246667777777888889899999999999999998      99999999999


Q ss_pred             HHHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHHHHHH
Q 008450          180 ISLGTLMAVTVLVYIQDE-ISRSVGYGICSVAMFMAIII  217 (565)
Q Consensus       180 ~~lg~~lg~~i~g~l~~~-~gw~~~f~i~~~~~~~~~~~  217 (565)
                      .++|.++++.+++++.+. .|||..|++.++..++..+.
T Consensus       139 ~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        139 YRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999988885 59999999988766554443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.79  E-value=3.3e-17  Score=164.88  Aligned_cols=119  Identities=18%  Similarity=0.167  Sum_probs=107.5

Q ss_pred             CCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCc
Q 008450           46 MHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQAS  125 (565)
Q Consensus        46 l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  125 (565)
                      .+-+..-.|.+-+.|.+.++++++.+|.++||+ |||+++.+|.+..++...+.+.+.+                     
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~~---------------------  120 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSRN---------------------  120 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            334556678899999999999999999999999 9999999999999999888888854                     


Q ss_pred             chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcc
Q 008450          126 GFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  196 (565)
Q Consensus       126 ~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~  196 (565)
                         +..++.+|++.|+.-|-. ..+.++++|++++++      |+..++.......+|.++||.+||++.+
T Consensus       121 ---F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  121 ---FAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ---HHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence               666778899999999887 567799999999998      9999999999999999999999999988

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=5.3e-18  Score=171.56  Aligned_cols=148  Identities=18%  Similarity=0.149  Sum_probs=136.5

Q ss_pred             cCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCC
Q 008450           45 TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQA  124 (565)
Q Consensus        45 ~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  124 (565)
                      +.+-...++|++.+++.+.+.+..++.|.+.||+ |+|-.+++|++++.+.++++++.++                    
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~s--------------------  158 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGNS--------------------  158 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcch--------------------
Confidence            4566789999999999999999999999999998 9999999999999999999999955                    


Q ss_pred             cchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhH
Q 008450          125 SGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGY  204 (565)
Q Consensus       125 ~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f  204 (565)
                          +++++++|.+||+|.++...+..++++|.+|++.+     |+++++.......+|-++||.+||.+.+..|++.+|
T Consensus       159 ----y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF  229 (464)
T KOG3764|consen  159 ----YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF  229 (464)
T ss_pred             ----hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence                67799999999999999999999999999998874     999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 008450          205 GICSVAMFMAIIIFLAGT  222 (565)
Q Consensus       205 ~i~~~~~~~~~~~~~~~~  222 (565)
                      .+.++.+++...+-++..
T Consensus       230 lVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  230 LVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             HHHHHHHHHHHHHHHhee
Confidence            999988887666655543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=1.6e-16  Score=174.86  Aligned_cols=140  Identities=17%  Similarity=0.102  Sum_probs=126.9

Q ss_pred             hcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccC
Q 008450           44 GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQ  123 (565)
Q Consensus        44 ~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  123 (565)
                      +.++.+.....+..+.+.++..+++++.|+++||+ |||++++.++++.+++.++.+++.+                   
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~~-------------------  170 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAPN-------------------  170 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhCc-------------------
Confidence            45677788889999999999999999999999997 9999999999999999999999943                   


Q ss_pred             CcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccchhh
Q 008450          124 ASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVG  203 (565)
Q Consensus       124 ~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~  203 (565)
                           ++.+.+.|++.|++.++...+...+++|.+++++      |+.+.++ ......++.+++++++++..  +||+.
T Consensus       171 -----~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~  236 (521)
T KOG0255|consen  171 -----YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL  236 (521)
T ss_pred             -----HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence                 8889999999999999999999999999999999      9999999 88888888889999999877  89999


Q ss_pred             HHHHHHHHHHHHHH
Q 008450          204 YGICSVAMFMAIII  217 (565)
Q Consensus       204 f~i~~~~~~~~~~~  217 (565)
                      +++..+..++.++.
T Consensus       237 ~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  237 FWIISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99987776655554

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.77  E-value=2.5e-16  Score=165.75  Aligned_cols=154  Identities=10%  Similarity=0.015  Sum_probs=136.0

Q ss_pred             HHHHHHhhhcCCCCchh-hhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008450           36 VNLVTYLVGTMHLPSAT-SANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK  114 (565)
Q Consensus        36 ~~l~~yl~~~l~~s~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  114 (565)
                      +.+.+|+.+++|++..| .|.+.+++..++.++.+++|+++||+ |.|+++.++++...+.+++.+++++          
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~S----------  114 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGTS----------  114 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            44788999999999999 99999999999999999999999999 9999999999999999999999855          


Q ss_pred             CCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHh
Q 008450          115 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI  194 (565)
Q Consensus       115 ~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l  194 (565)
                                    ...+.+.|++.|++.|+.. +...++..++|+++      |+++.++...+.++|.++++++++++
T Consensus       115 --------------l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       115 --------------VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          7779999999999999999 99999999999999      99999999999999999999999994


Q ss_pred             cccccchhhHH---HHHHHHHHHHHHHHhcc
Q 008450          195 QDEISRSVGYG---ICSVAMFMAIIIFLAGT  222 (565)
Q Consensus       195 ~~~~gw~~~f~---i~~~~~~~~~~~~~~~~  222 (565)
                       ..+|||+-+.   |......+++++.++++
T Consensus       174 -~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       174 -VTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             -HhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence             4678887554   44444455555555543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.77  E-value=1.1e-15  Score=161.89  Aligned_cols=369  Identities=15%  Similarity=0.151  Sum_probs=218.3

Q ss_pred             HHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 008450           34 IAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC  113 (565)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  113 (565)
                      ..++++.|+. +.|+|..|+|.+.+...+..+++++++|+++||...+||.+.+..++.++...+....+          
T Consensus        21 ~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~----------   89 (400)
T PF03825_consen   21 FLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS----------   89 (400)
T ss_pred             HHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence            4567888886 56899999999999999999999999999999985677877776666555544444432          


Q ss_pred             CCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHH-HH
Q 008450          114 KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTV-LV  192 (565)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i-~g  192 (565)
                                    +++.+++..++..+......|...++..+...+        +++-++......++|.+++... ++
T Consensus        90 --------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iRlwGSiGf~~~~~~~~~  147 (400)
T PF03825_consen   90 --------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIRLWGSIGFIVAALAFGG  147 (400)
T ss_pred             --------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcchhhhhHHHHHHHHHHHH
Confidence                          266677777778888888888888887777653        4445777777888888777443 23


Q ss_pred             Hhccccc---chhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccc
Q 008450          193 YIQDEIS---RSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASR  269 (565)
Q Consensus       193 ~l~~~~g---w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (565)
                      ++....+   ..+.+++.++..++.. .+.+..|+.+.++..+++.++                                
T Consensus       148 ~~~~~~~~~~~~~~~~i~~~~~~ll~-~~~l~lp~~~~~~~~~~~~~~--------------------------------  194 (400)
T PF03825_consen  148 LLGGYLGISGTSLIFYIAAILSLLLA-GFALFLPKTPPKRSAKESVKK--------------------------------  194 (400)
T ss_pred             HHHhhhccccccHHHHHHHHHHHHHH-HHHHhCCCCccccccCCCccc--------------------------------
Confidence            3332222   2344555544332222 222222322211100000000                                


Q ss_pred             cCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhccccccc
Q 008450          270 IHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG  349 (565)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (565)
                            ....+.                      .+..++++.....+..+.....+.. +..+.+.+..+.......  
T Consensus       195 ------~~~~~~----------------------~~llk~~~~~~Fll~~~l~~~~~~~-~~~f~~~yl~~~gg~~~~--  243 (400)
T PF03825_consen  195 ------LLGLDA----------------------LKLLKNPRFLVFLLAAFLIGISHAA-YYTFFSIYLQELGGYSGS--  243 (400)
T ss_pred             ------ccchHH----------------------HHHhcCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccchhh--
Confidence                  000000                      0011222222222222222222222 222223333321111101  


Q ss_pred             ccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCC
Q 008450          350 RFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTA  429 (565)
Q Consensus       350 ~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (565)
                          ..+....+..+.-+....+.+++    .+|      ++..+.+.++.+..++-..++++..               
T Consensus       244 ----~~g~~~~l~~~aEi~~f~~~~~~----~~r------~g~~~ll~~a~~~~~vR~~l~a~~~---------------  294 (400)
T PF03825_consen  244 ----TIGILWALGVVAEIPFFFFSGRF----LKR------FGIKWLLLLALVAYAVRWLLYAYFS---------------  294 (400)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHH----HHh------cCHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence                11222233334444444444444    343      3445668888888888888877641               


Q ss_pred             Ccceeehh----hHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHH-HHHHHHHhhHHhhhhhhcccCCCCC
Q 008450          430 TLPVSVFL----LIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTT-LSLGFFVSSFLVAVVKKVTGSKGGG  504 (565)
Q Consensus       430 ~~~~s~~~----li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~-~~lg~~ig~~l~~~l~~~~~~~~~~  504 (565)
                         .+.+.    ..+...+.|+..++...+...++.+.+|++.|++++++++.. ..+|..+|+.++|.+.+..+.++. 
T Consensus       295 ---~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~-  370 (400)
T PF03825_consen  295 ---DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM-  370 (400)
T ss_pred             ---CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh-
Confidence               12222    233456799999999999999999999999999999999876 479999999999998764432211 


Q ss_pred             CccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 008450          505 GWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWY  541 (565)
Q Consensus       505 ~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~  541 (565)
                               -.+..++.+.+++.++..+++++..+++
T Consensus       371 ---------~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  371 ---------FDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence                     1134567778888888887777776553

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.76  E-value=1.5e-15  Score=163.19  Aligned_cols=431  Identities=14%  Similarity=0.102  Sum_probs=247.9

Q ss_pred             HHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhc----cccchhHHHHH-HHHHHHHHHHHHH
Q 008450           27 ERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADT----FLGRYKTIAIF-AAVQTLGTGMLAM  101 (565)
Q Consensus        27 ~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Grr~~~~~~-~~~~~~~~~~~a~  101 (565)
                      -++++-...+++++|+ +++|.+..+.+++..+..+...+..|+.|+++||    + ||||.++++ .+...++..++++
T Consensus        16 iq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~~~~~l~ll~~   93 (477)
T TIGR01301        16 VQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAALVAFAVILIGF   93 (477)
T ss_pred             HHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHHHHHHHHHHHh
Confidence            3445444556667765 5899999999999999999999999999999995    7 999998875 5556666677766


Q ss_pred             HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHH
Q 008450          102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS  181 (565)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (565)
                      +.++..+...+       ............+.++..+..++.....+...++++|..|+++++    ++.+.++...+.+
T Consensus        94 ~~~~~~~~~~~-------~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~  162 (477)
T TIGR01301        94 AADIGHLFGDN-------LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMA  162 (477)
T ss_pred             Cchhhhhcccc-------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHH
Confidence            63321100000       000000111234455555566688888888899999999988721    4678999999999


Q ss_pred             HHHHHHHHHHHHh--ccc-------------ccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHH
Q 008450          182 LGTLMAVTVLVYI--QDE-------------ISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAI  246 (565)
Q Consensus       182 lg~~lg~~i~g~l--~~~-------------~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (565)
                      +|.++|+.++++.  .+.             .+.+..|++.+++.++..++..+..++.+..++++.+.+          
T Consensus       163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~----------  232 (477)
T TIGR01301       163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS----------  232 (477)
T ss_pred             HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh----------
Confidence            9999999999875  221             157889998887777666665554444321111100000          


Q ss_pred             HhccccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHH
Q 008450          247 KKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIF  326 (565)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (565)
                                   .++..   .  +......+.+.                     ......-.|.+...+.+-....+.
T Consensus       233 -------------~~~~~---~--~~~~~~~~~~i---------------------~~~~~~mP~~m~~l~~vqffsW~a  273 (477)
T TIGR01301       233 -------------EAAPP---S--KHGEEAFFGEL---------------------FGAFKYLPRPVWILLLVTCLNWIA  273 (477)
T ss_pred             -------------hcccc---c--ccchhhhHHHH---------------------HHHHHHCCHHHHHHHHHHHHHHHH
Confidence                         00000   0  00000000000                     000011123444455555556666


Q ss_pred             Hhhhcccchhhhhhhhccccc--ccccccC---cchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHH
Q 008450          327 WTTYAQMITFSVEQATTMERS--IGRFQIP---AGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLV  401 (565)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~  401 (565)
                      |..+..+.+.++-+..+-...  ...+...   ..+....+.+...+    ...++.++.+|...     +...-.++.+
T Consensus       274 ~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i----~s~~l~~l~~~~g~-----~k~~~~~s~~  344 (477)
T TIGR01301       274 WFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGI----TSIGMEKLCRGWGA-----GKRLWGIVNI  344 (477)
T ss_pred             HHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcc-----chhHHHHHHH
Confidence            666666665554432221111  0001000   11112223333333    33333444444321     1122377888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcCCCC-CCccee-ehhhHHHHHHHHHHHHHhhhhhHhhhhccCCc--hhhHHHHHHHH
Q 008450          402 LSIVGMAAAALVERKRLSVARAVGLTT-ATLPVS-VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK--GMKTMSTGLFL  477 (565)
Q Consensus       402 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s-~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~--~~rg~~~gl~~  477 (565)
                      +.+++++...+...-..+....++..+ -..+.. .+..++.+.+.|+..+..+..-++++++..|+  +..|..+|+.|
T Consensus       345 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN  424 (477)
T TIGR01301       345 ILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLN  424 (477)
T ss_pred             HHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHH
Confidence            888888877665321000000000000 000011 25567788899999999999999999999995  45599999999


Q ss_pred             HHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 008450          478 TTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYK  542 (565)
Q Consensus       478 ~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~  542 (565)
                      ++--+...+.+...+.+....++              +....+.+.++..+++.+..+...++.+
T Consensus       425 ~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       425 LAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999988877765433221              1244677888888888888877776643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.75  E-value=4.7e-16  Score=169.10  Aligned_cols=361  Identities=12%  Similarity=0.079  Sum_probs=207.6

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhh----ccccc-hhHHHHHHHHHHHHHHH
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLAD----TFLGR-YKTIAIFAAVQTLGTGM   98 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Gr-r~~~~~~~~~~~~~~~~   98 (565)
                      ++...+.+..+..+++.|+++.+|+++.++|.+.....+.-++..|+.|+++|    |+ || |+.++.+.+..+++..+
T Consensus        15 ~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~~l   93 (473)
T PRK10429         15 AFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVLFL   93 (473)
T ss_pred             hhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHHHH
Confidence            34455666667788999999999999999999999999999999999999999    66 77 55666677777776655


Q ss_pred             HHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhH
Q 008450           99 LAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  178 (565)
Q Consensus        99 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (565)
                      +-..   |++               ++...+..+++.-.+.+++.........+++.|..++.+|     |.+..++-..
T Consensus        94 lf~~---p~~---------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e-----R~~l~~~~~~  150 (473)
T PRK10429         94 LFSA---HLF---------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE-----REQLVPYPRF  150 (473)
T ss_pred             HHcC---CCC---------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH-----HHHHHHHHHH
Confidence            5332   210               1112344566666677888888888899999998854433     8888888677


Q ss_pred             HHHHHHHHHHHHHHHhcc-------cccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccc
Q 008450          179 FISLGTLMAVTVLVYIQD-------EISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKM  251 (565)
Q Consensus       179 ~~~lg~~lg~~i~g~l~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (565)
                      ..++|..+++.+...+..       ..+|+....+.+++.++..++.+...++.. +++..++..               
T Consensus       151 ~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~---------------  214 (473)
T PRK10429        151 FASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY-SSDNQVSAE---------------  214 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC-Ccccccccc---------------
Confidence            777776665544443211       224666666655555544433333222210 000000000               


Q ss_pred             cCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhc
Q 008450          252 DLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYA  331 (565)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (565)
                                           .+..++.+..                      +.....|.+...+..............
T Consensus       215 ---------------------~~~~~~~~~~----------------------~~~~~n~~~~~ll~~~~~~~~~~~~~~  251 (473)
T PRK10429        215 ---------------------GSHLTLKDIV----------------------ALIYKNDQLSCLLGMALAYNIASNIIN  251 (473)
T ss_pred             ---------------------ccCCCHHHHH----------------------HHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence                                 0000000000                      001111222222222111112111111


Q ss_pred             ccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 008450          332 QMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAA  411 (565)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~  411 (565)
                      .....+....  ...     ....+.+..+..+..++..++.+++.+++.+|          +.+.++.++..++.+.+.
T Consensus       252 ~~~~y~~~y~--~~~-----~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk----------~~~~~~~~~~~~~~~~~~  314 (473)
T PRK10429        252 GFAIYYFTYV--IGD-----ADLFPYYLSYAGAANLVTLILFPRLVKSLSRR----------ILWAGASIFPVLSCGVLL  314 (473)
T ss_pred             hheeeEEEEE--CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH----------HHHHHHHHHHHHHHHHHH
Confidence            1111111110  000     00112233344455666677777775555444          334555555555544433


Q ss_pred             HHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCC-------chhhHHHHHHHHHHHHHHH
Q 008450          412 LVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP-------KGMKTMSTGLFLTTLSLGF  484 (565)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gl~~~~~~lg~  484 (565)
                      +....              .+.+.+.+++..++.+++.+...+..+++..|..+       .+..|...|...+...+|.
T Consensus       315 ~~~~~--------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~  380 (473)
T PRK10429        315 LMGLA--------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGS  380 (473)
T ss_pred             HHhcc--------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHH
Confidence            21000              01234455667778889999999999999999976       4456778999999999999


Q ss_pred             HHhhHHhhhhhhcc
Q 008450          485 FVSSFLVAVVKKVT  498 (565)
Q Consensus       485 ~ig~~l~~~l~~~~  498 (565)
                      .+++.+.+.+....
T Consensus       381 al~~~i~g~~l~~~  394 (473)
T PRK10429        381 AFAAFFIGVVLGLI  394 (473)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999876544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.75  E-value=6.9e-16  Score=168.32  Aligned_cols=389  Identities=13%  Similarity=0.015  Sum_probs=213.5

Q ss_pred             HHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008450           36 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE  115 (565)
Q Consensus        36 ~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  115 (565)
                      .....++..++|-+ ....|+.+...++..+..++.|+|+|.| |||.+++.+.++..+|+++++.+++           
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~~-----------  130 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQN-----------  130 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCCc-----------
Confidence            34557888889875 6678999999999999999999999999 9999999999999999999998854           


Q ss_pred             CCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhc
Q 008450          116 TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  195 (565)
Q Consensus       116 ~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~  195 (565)
                                   +..+..+-.+.|+|.|... .....++|..|.+.      |.....+.....-.....++.++..+.
T Consensus       131 -------------~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~  190 (599)
T PF06609_consen  131 -------------MNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFA  190 (599)
T ss_pred             -------------HHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence                         6669999999999987765 45666899999887      876555444433344445666666666


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHH-hcc-ccccccCCCCCchHHH-------HHHHHHHHHhccccCCCCcCccccCCcc
Q 008450          196 DEISRSVGYGICSVAMFMAIIIFL-AGT-KRYRYKKSSGSPIVHI-------FQVIVAAIKKRKMDLPCNVGMLYEDTPE  266 (565)
Q Consensus       196 ~~~gw~~~f~i~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (565)
                      ...+|||.|++.++...+++++.+ +.. |+++..+.++.+..+.       ...+....-. ....    ...|.- ..
T Consensus       191 ~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~-LfLl----gl~wgG-~~  264 (599)
T PF06609_consen  191 AHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLA-LFLL----GLSWGG-YP  264 (599)
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHH-HHHH----HHhccC-CC
Confidence            667999999998876555544333 222 2221111211111111       0000000000 0000    000000 00


Q ss_pred             ccccCCCcchhHHhHHHHhhcCCCCCCCCCC-CCccccchhhHhHhHHHhHH-HHHHHHHHHHhhhcccchhhhhhhhcc
Q 008450          267 ASRIHHTEQFHFLDKAAIVAEGDFEAGSTPN-PWKLCSVTSVEEVKMVARLL-PIWATTIIFWTTYAQMITFSVEQATTM  344 (565)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (565)
                      +..|.++.....+-.+........-.+.+.. ..+.+..+..+++|.+...+ ..+.....++.    ...++..+..++
T Consensus       265 ~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s----~~~l~p~~~~~v  340 (599)
T PF06609_consen  265 YYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFS----VNILWPQQVVNV  340 (599)
T ss_pred             CCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhh
Confidence            0123333333222221111000000000000 01112222333433333222 11222222222    222222222111


Q ss_pred             -cccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008450          345 -ERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARA  423 (565)
Q Consensus       345 -~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~  423 (565)
                       +...-+. ....+......+...+.+.+.+.+.    ++.+     ..++.+.++.+++.+.+..+.....        
T Consensus       341 f~~d~~~~-~~~~~~s~~~~fg~~~g~~i~g~l~----~~ir-----~~Kw~li~~~~~~ta~~Gama~~~~--------  402 (599)
T PF06609_consen  341 FGSDPISI-TEIGWISSPVGFGSCAGAVILGLLF----SKIR-----HIKWQLIFGSVLMTAFCGAMAAVRP--------  402 (599)
T ss_pred             ccCCCccc-ceeehhhhhHHHHHHHHHHHHHHHH----HHcc-----chhHHHHHHHHHHHHHHHHHHHccC--------
Confidence             1110000 0122333333444444444444442    2211     1223456777777776666654421        


Q ss_pred             cCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhh
Q 008450          424 VGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVV  494 (565)
Q Consensus       424 ~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l  494 (565)
                            + ..+  ..+...++.++|.+...........-..|++.-|+++|+....+.+|+.+|..+...+
T Consensus       403 ------~-n~~--~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  403 ------D-NKN--AAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             ------C-Ccc--hHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                  1 112  2234566777777777777777788889999999999999999999999999988654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00788 fbt folate/biopterin transporter

Probab=99.75  E-value=1.2e-15  Score=165.67  Aligned_cols=372  Identities=12%  Similarity=0.109  Sum_probs=215.9

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcccc-----chhHHHHHHHHHH-HHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLG-----RYKTIAIFAAVQT-LGT   96 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~~~~~~~~~~-~~~   96 (565)
                      .++++-+. +.+...+.+++.+++|++.++.+...+...+...+-.+ +|.++||+ +     ||+.++++.++.. ++.
T Consensus        34 ~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~~~~~~  110 (468)
T TIGR00788        34 VLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLGSAILY  110 (468)
T ss_pred             HHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHHHHHHH
Confidence            57777777 77777888899989999999999999999998888666 99999999 7     6777776665542 222


Q ss_pred             HHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehh
Q 008450           97 GMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  176 (565)
Q Consensus        97 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (565)
                      ..++..   ++                    ......+.+++.+++.+......-++..|..+ +++   +.++...++.
T Consensus       111 ~~l~~~---~~--------------------~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~  163 (468)
T TIGR00788       111 GLLPGK---VS--------------------SAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWM  163 (468)
T ss_pred             Hhcccc---cc--------------------hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHH
Confidence            222211   11                    23334457888999999999999999999998 331   1255677777


Q ss_pred             hHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCC
Q 008450          177 FFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCN  256 (565)
Q Consensus       177 ~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (565)
                      +...++|.++|+.++|++.+.++|+..|++.+++.++..+...+.+++.....|+..+.....     ..+         
T Consensus       164 ~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~-----~~~---------  229 (468)
T TIGR00788       164 WGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMN-----MAL---------  229 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhh-----hhh---------
Confidence            888889999999999999999999999998877766654433333221000111100000000     000         


Q ss_pred             cCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccc-h
Q 008450          257 VGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMI-T  335 (565)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  335 (565)
                                   ...+......+..   +                .......++.+...+.+   ..+.+....... .
T Consensus       230 -------------~~~~~~~~~~~~~---~----------------~l~~~l~~~~i~~~l~f---ifl~~~~~~~~~~~  274 (468)
T TIGR00788       230 -------------LTLGVLANVKVQI---L----------------GLRGAIQLLEIAKPLIF---IFLSYANLPGASGS  274 (468)
T ss_pred             -------------hhhhHHHHHHHHH---H----------------HHHHHHhcHHHHHHHHH---HHHHHhhcCCCCce
Confidence                         0000000000000   0                00000011112111111   111011111111 1


Q ss_pred             hhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008450          336 FSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVER  415 (565)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~  415 (565)
                      .+..+..    .++......+.+.....+..++...+.+++    .+|      .+.++.+.++.++..++.....+...
T Consensus       275 ~f~~~~~----~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~----~~~------~~~r~~l~~~~~l~~~~~~~~~~l~~  340 (468)
T TIGR00788       275 VFCATTQ----CLPGGPSFSGMSKVVGNLGSLCGVGGYDRF----LKT------FPYRLLFGVTTLLYTLSSLFDLILVK  340 (468)
T ss_pred             eEEEEcc----cCCCCcchhhhHHHHHHHHHHHHHHHHHHH----Hhh------CCHHHHHHHHHHHHHHHHhCceeeee
Confidence            1111111    111111223334444445555555555544    332      34455567777777766644321100


Q ss_pred             HHhhhhhhcCCCCCCc-ceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhh
Q 008450          416 KRLSVARAVGLTTATL-PVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVV  494 (565)
Q Consensus       416 ~~~~~~~~~~~~~~~~-~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l  494 (565)
                      . .         +... ....++++...++.+++.++.+.+...++.+..|++.+|+..|+.+...++|..+++.+++.+
T Consensus       341 ~-~---------~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l  410 (468)
T TIGR00788       341 R-W---------NLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL  410 (468)
T ss_pred             c-c---------ccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 0         0000 012334555677888888888888899999999999999999999999999999999999888


Q ss_pred             hhc
Q 008450          495 KKV  497 (565)
Q Consensus       495 ~~~  497 (565)
                      .+.
T Consensus       411 ~~~  413 (468)
T TIGR00788       411 MET  413 (468)
T ss_pred             HHH
Confidence            654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09669 putative symporter YagG; Provisional

Probab=99.74  E-value=4.4e-16  Score=167.96  Aligned_cols=353  Identities=12%  Similarity=0.076  Sum_probs=204.0

Q ss_pred             HHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhc----cccch-hHHHHHHHHHHHHHHHH
Q 008450           25 LCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADT----FLGRY-KTIAIFAAVQTLGTGML   99 (565)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Grr-~~~~~~~~~~~~~~~~~   99 (565)
                      +...+.+..+..+++.|+++.+|+++.++|.+.++..+...+..|+.|+++||    + ||| +.++.+.+..+++..++
T Consensus        19 ~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~~l~   97 (444)
T PRK09669         19 TACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVCLLT   97 (444)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHHHHH
Confidence            33444556667889999999999999999999999999999999999999999    5 775 55556667777766555


Q ss_pred             HHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHH
Q 008450          100 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  179 (565)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (565)
                      ...   |+.               ........+++...+.+++.........++.+|..++.++     |++..++....
T Consensus        98 f~~---p~~---------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R~~l~~~r~~~  154 (444)
T PRK09669         98 FYT---PDF---------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----RHSLQSWRFAL  154 (444)
T ss_pred             HhC---CCC---------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----HHHHHHHHHHH
Confidence            433   220               0112355566666666777777777788999998855432     88888888888


Q ss_pred             HHHHHHHHHHHHHHhcc-------cccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhcccc
Q 008450          180 ISLGTLMAVTVLVYIQD-------EISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMD  252 (565)
Q Consensus       180 ~~lg~~lg~~i~g~l~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (565)
                      .++|..+++.+...+..       ..+|+..+.+.+++.++..++.++..++. .++++.++ .+..+.+..        
T Consensus       155 ~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~-~~~~~~~~-~~~~~~~~~--------  224 (444)
T PRK09669        155 SFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER-YTPEVDNS-SSVWKDLKL--------  224 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe-cCCCCcCC-CCHHHHHHH--------
Confidence            88887777654443322       34688777777766555544433332221 11110000 000000000        


Q ss_pred             CCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcc
Q 008450          253 LPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQ  332 (565)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (565)
                                                                            ....|.+...+...+...........
T Consensus       225 ------------------------------------------------------~~~n~~~~~l~~~~~~~~~~~~~~~~  250 (444)
T PRK09669        225 ------------------------------------------------------LLGNSQWRIMFIFNVVLLTAVVTRGG  250 (444)
T ss_pred             ------------------------------------------------------HhCCchHHHHHHHHHHHHHHHHHHhh
Confidence                                                                  00111111111111111111111111


Q ss_pred             cchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 008450          333 MITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL  412 (565)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~  412 (565)
                      ....+...  ..+..    . ....+.....+..++..++.+++.+++.+|          +.+..+.++..+....+.+
T Consensus       251 ~~~y~~~~--~~~~~----~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~----------~~~~~~~~~~~~~~~~~~~  313 (444)
T PRK09669        251 ATLYYVNY--VLLRP----D-LATLFLVTGMIAGLFGALLSERLLGKFDRV----------RAFKWTIVAFVILSALIFF  313 (444)
T ss_pred             hhheeeee--ecCCH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHhChH----------HHHHHHHHHHHHHHHHHHH
Confidence            11111110  01100    0 011222233444455566666665554433          2344455444433322222


Q ss_pred             HHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCC-------chhhHHHHHHHHHHHHHHHH
Q 008450          413 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP-------KGMKTMSTGLFLTTLSLGFF  485 (565)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gl~~~~~~lg~~  485 (565)
                      ..                 ..+.+.+++..++.+++.+...+..+++..|..+       ++..|...|+++++..+|..
T Consensus       314 ~~-----------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~a  376 (444)
T PRK09669        314 IP-----------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLA  376 (444)
T ss_pred             hC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHH
Confidence            21                 1234445666788999999999999999998886       34567788999999999999


Q ss_pred             HhhHHhhhhhhccc
Q 008450          486 VSSFLVAVVKKVTG  499 (565)
Q Consensus       486 ig~~l~~~l~~~~~  499 (565)
                      +|+.+.+.+....+
T Consensus       377 lg~~i~g~ll~~~G  390 (444)
T PRK09669        377 IGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999998876543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.73  E-value=1.8e-15  Score=154.39  Aligned_cols=169  Identities=18%  Similarity=0.205  Sum_probs=139.3

Q ss_pred             CCchhhHHHHHHHhHHHHHH----HHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHH
Q 008450           18 PSKTGIELCERLSTMGIAVN----LVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT   93 (565)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~----l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~   93 (565)
                      +.-..+-.+.-+..||+...    +.+.+++.++++..|++.+..+++.++++++++.|++.+|+ |+|+.+++++.+++
T Consensus        11 ~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~a   89 (422)
T COG0738          11 VKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYA   89 (422)
T ss_pred             ceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHH
Confidence            33344566666667777654    67788889999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhccee
Q 008450           94 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  173 (565)
Q Consensus        94 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (565)
                      +|+.++.=+++                     ...+..++++.++.|.|.+....+.+++++...++++      -..-+
T Consensus        90 vg~~lF~pAa~---------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rl  142 (422)
T COG0738          90 VGAALFWPAAS---------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRL  142 (422)
T ss_pred             HHHHHHhhhhh---------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHH
Confidence            99999864432                     2458999999999999999999999999999999976      44447


Q ss_pred             ehhhHHHHHHHHHHHHHHHHhccc-------------------ccchhhHHHHHHHHHHH
Q 008450          174 SRFFFFISLGTLMAVTVLVYIQDE-------------------ISRSVGYGICSVAMFMA  214 (565)
Q Consensus       174 ~~~~~~~~lg~~lg~~i~g~l~~~-------------------~gw~~~f~i~~~~~~~~  214 (565)
                      ++.+....+|+++||.+++++..+                   ..++.+|.+.+...++.
T Consensus       143 nl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll  202 (422)
T COG0738         143 NLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLL  202 (422)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            777888999999999999988762                   23777777655444433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.73  E-value=2.5e-17  Score=169.38  Aligned_cols=404  Identities=14%  Similarity=0.092  Sum_probs=223.8

Q ss_pred             CCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcch
Q 008450           48 LPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGF  127 (565)
Q Consensus        48 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (565)
                      +++...+.+..+-.++.++++++.||++||+ |||+++-..++++++++++++++...++                 ...
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~~~-----------------~~~  142 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGTTS-----------------PLG  142 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCCCC-----------------Ccc
Confidence            6677778888999999999999999999999 9999999999999999997777633221                 224


Q ss_pred             hHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcc-----------
Q 008450          128 QMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD-----------  196 (565)
Q Consensus       128 ~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~-----------  196 (565)
                      -+..+...|++.|+|.|+-+|...+..+|..-.+.      ||...++..++...|.+.|.++.-.+..           
T Consensus       143 ~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~  216 (538)
T KOG0252|consen  143 VMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPST  216 (538)
T ss_pred             hhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCC
Confidence            58889999999999999999999999999877777      9999999888888777776555543321           


Q ss_pred             ----cccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCC
Q 008450          197 ----EISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHH  272 (565)
Q Consensus       197 ----~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (565)
                          +.=||..|.+.++..++.+..-+.++..-+++.-.....       ..+.+.  .+.+...  -.+          
T Consensus       217 ~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~-------~~a~~d--~~k~~~~--~~~----------  275 (538)
T KOG0252|consen  217 YPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKL-------KQAAGD--MKKVLSV--DIE----------  275 (538)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCH-------hhhhhc--ccccccc--ccc----------
Confidence                123998888776554443322222111111110000000       000000  0000000  000          


Q ss_pred             CcchhHHhHHHHhhcCCCCCCCCCCCC-ccccc-hhhHhHhHHHhHHHHHHH-HHHHHhhhcccchhhhhhhhccccccc
Q 008450          273 TEQFHFLDKAAIVAEGDFEAGSTPNPW-KLCSV-TSVEEVKMVARLLPIWAT-TIIFWTTYAQMITFSVEQATTMERSIG  349 (565)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (565)
                             +.. ...+..    +.++.+ ..+.. ....+-|.++.....|.. -+.++. .....+............  
T Consensus       276 -------~~~-~~~~~~----~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~-~nL~~s~I~~~ig~~~~~--  340 (538)
T KOG0252|consen  276 -------AES-TAESDV----PPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYG-QNLFQSVIFSAIGVIPSA--  340 (538)
T ss_pred             -------hhh-ccccCC----CCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-cccHHHHHHHhhccCCCc--
Confidence                   000 000000    011111 11111 001122333222222211 111111 010000011100000000  


Q ss_pred             ccccCcchhhhhhhHHHHHHH-----HHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 008450          350 RFQIPAGSLTVFFVSAILITL-----AVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAV  424 (565)
Q Consensus       350 ~~~~~~~~~~~~~~~~~li~~-----~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~  424 (565)
                       .....-.-.+.....+...+     ++...++|.++||          ..-..|++++++-+++++....         
T Consensus       341 -~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk----------~iq~~GF~~~~i~~~~~~~~y~---------  400 (538)
T KOG0252|consen  341 -NTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK----------YIQLMGFFIMTIFFFVIAGPYN---------  400 (538)
T ss_pred             -chHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH----------HHHHhhHHHHHHHHHHHcCCcc---------
Confidence             00000000111112222222     2223345555555          3357788888888877765321         


Q ss_pred             CCCCCCcceeehhhHHHHHHH-HHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCC
Q 008450          425 GLTTATLPVSVFLLIPQFFLV-GAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGG  503 (565)
Q Consensus       425 ~~~~~~~~~s~~~li~~~~l~-g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~  503 (565)
                          +  ..+..-.++.+.+. -++...-..+...+..|.+|.+.||+.-|+...+.-+|+.+|......+.+.      
T Consensus       401 ----~--~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~------  468 (538)
T KOG0252|consen  401 ----Q--LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH------  468 (538)
T ss_pred             ----c--ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc------
Confidence                0  11222223333222 2344444567778899999999999999999999999999999988776421      


Q ss_pred             CCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccc
Q 008450          504 GGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAG  549 (565)
Q Consensus       504 ~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~~~~~  549 (565)
                       . .|.+..   ..+.+++++++++++.++.+++- |+++++.++.
T Consensus       469 -~-yp~~~g---~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~leei  508 (538)
T KOG0252|consen  469 -N-YPPNIG---VRNVFIILAGCMLLGILFTLLIP-ETKGKSLEEI  508 (538)
T ss_pred             -c-CCcccc---chHHHHHHHHHHHHhHheeEEee-cccccCHHHh
Confidence             1 233322   46779999999999998877765 8888776654

>PRK09848 glucuronide transporter; Provisional

Probab=99.73  E-value=2.9e-15  Score=161.75  Aligned_cols=354  Identities=11%  Similarity=0.081  Sum_probs=191.7

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcc---ccchhHH-HHHHHHHHHHHHHH
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF---LGRYKTI-AIFAAVQTLGTGML   99 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~-~~~~~~~~~~~~~~   99 (565)
                      ++...+.+....++++.|+++.+|+++.++|.+.+...+..++..++.|+++||.   .||||.. ..+.+...+...++
T Consensus        17 ~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~   96 (448)
T PRK09848         17 DVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLV   96 (448)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHH
Confidence            4445566666677888999999999999999999999999999999999999995   2666654 55555555444443


Q ss_pred             HHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHH
Q 008450          100 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  179 (565)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (565)
                      ...   |.              ...+.......++...+.+++.+...+...++..+..++.++     |.+..++-...
T Consensus        97 ~~~---~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~~~~~r~~~  154 (448)
T PRK09848         97 FWV---PT--------------DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RARLGAARGIA  154 (448)
T ss_pred             HhC---cC--------------CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHHHHHHHHHH
Confidence            211   10              000111234455566677888888888888887777665442     66655554332


Q ss_pred             -----HHHHHHHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhcccc
Q 008450          180 -----ISLGTLMAVTVLVYIQDEI--SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMD  252 (565)
Q Consensus       180 -----~~lg~~lg~~i~g~l~~~~--gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (565)
                           .+++..++|.+.+......  +|.....+.+++.++..++.....++   ..+.+.+.....+.+..        
T Consensus       155 ~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~~~--------  223 (448)
T PRK09848        155 ASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRE---NVVRIVAQPSLKISLQT--------  223 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEe---ccCCCccCCCHHHHHHH--------
Confidence                 3456666666665432211  11111111122222221122111111   10000000000000000        


Q ss_pred             CCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcc
Q 008450          253 LPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQ  332 (565)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (565)
                                                                           ..+++.........+.....+. ....
T Consensus       224 -----------------------------------------------------l~~n~~f~~~~~~~~~~~~~~~-~~~~  249 (448)
T PRK09848        224 -----------------------------------------------------LKRNRPLFMLCIGALCVLISTF-AVSA  249 (448)
T ss_pred             -----------------------------------------------------HhCCchHHHHHHHHHHHHHHHH-HHhh
Confidence                                                                 0111111111111111111111 1111


Q ss_pred             cchhhhhhhhcccccccccccCcchhhhhh-hHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 008450          333 MITFSVEQATTMERSIGRFQIPAGSLTVFF-VSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAA  411 (565)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~  411 (565)
                      ....+...      ..+.... .+.+...+ .+..++..++.+++.+++.+          .+.+.+|.++..++.+.+.
T Consensus       250 ~~~~~~~~------~~g~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~r~g~----------~~~~~~g~~~~~i~~~~~~  312 (448)
T PRK09848        250 SSLFYVRY------VLNDTGL-FTVLVLVQNLVGTVASAPLVPGMVARIGK----------KNTFLIGALLGTCGYLLFF  312 (448)
T ss_pred             hheeeEee------ecCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------HHHHHHHHHHHHHHHHHHH
Confidence            11112111      1110000 11111222 33345556666666544333          2446778877777766554


Q ss_pred             HHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCch-------hhHHHHHHHHHHHHHHH
Q 008450          412 LVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKG-------MKTMSTGLFLTTLSLGF  484 (565)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~-------~rg~~~gl~~~~~~lg~  484 (565)
                      +..                 ..+.+.+++..++.++|++...+..+++..|..|.+       .+|.++|++++.+.+|.
T Consensus       313 ~~~-----------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~  375 (448)
T PRK09848        313 WVS-----------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQ  375 (448)
T ss_pred             HcC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHH
Confidence            321                 123445566778899999999999999999988754       46999999999999999


Q ss_pred             HHhhHHhhhhhhcc
Q 008450          485 FVSSFLVAVVKKVT  498 (565)
Q Consensus       485 ~ig~~l~~~l~~~~  498 (565)
                      .+|+.+.+.+....
T Consensus       376 aig~~i~g~~l~~~  389 (448)
T PRK09848        376 AIGGSIPAFILGLS  389 (448)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999998876543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.73  E-value=2.3e-21  Score=209.01  Aligned_cols=140  Identities=21%  Similarity=0.306  Sum_probs=119.2

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHH
Q 008450           51 ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMG  130 (565)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (565)
                      .+.+++.+...++..++++++|+++||+ |||++++++.++..++.++.++++..                     .+++
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~  103 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY---------------------NNFW  103 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc---------------------cccc
Confidence            3568899999999999999999999999 99999999999999999999998411                     1378


Q ss_pred             HHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccc---ccchhhHHHH
Q 008450          131 VLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE---ISRSVGYGIC  207 (565)
Q Consensus       131 ~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~---~gw~~~f~i~  207 (565)
                      .+.++|+++|+|.|+..+....++.|..|++.      |++..++.+....+|.+++..++-.+.+.   .+||+.+.+.
T Consensus       104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~  177 (451)
T PF00083_consen  104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG  177 (451)
T ss_pred             cccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999      99999999999999998887666544332   4599999887


Q ss_pred             HHHHHHHHHHH
Q 008450          208 SVAMFMAIIIF  218 (565)
Q Consensus       208 ~~~~~~~~~~~  218 (565)
                      .+..++.++..
T Consensus       178 ~~~~l~~~~~~  188 (451)
T PF00083_consen  178 AIPSLLVLLLR  188 (451)
T ss_pred             ccccccccccc
Confidence            77665444433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.72  E-value=1.5e-15  Score=170.16  Aligned_cols=188  Identities=16%  Similarity=0.212  Sum_probs=146.2

Q ss_pred             HHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008450           28 RLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQ  107 (565)
Q Consensus        28 ~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~  107 (565)
                      +....+......+.+.++++++..+.|++.+.+.++..++.++.|+++||+ ||||.+.++++++++|++++++.+.+..
T Consensus        45 ~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~lg~ll~alphf~~~  123 (633)
T TIGR00805        45 GLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMGLGSFLLSLPHFLSG  123 (633)
T ss_pred             HHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHHHHHHHHhChHHhcC
Confidence            334456777777888899999999999999999999999999999999999 9999999999999999999988642110


Q ss_pred             ----------------cCCCCCCCCCcc---------cccCCc--chhHHHHHHHHHHHHHhccccccchhhhhhccCCC
Q 008450          108 ----------------LRPRPCKETATH---------TCEQAS--GFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDE  160 (565)
Q Consensus       108 ----------------~~~~~~~~~~~~---------~~~~~~--~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~  160 (565)
                                      ...+-|.++.+-         .|++.+  ...+..++++|+++|+|.+...+...+++.|++|+
T Consensus       124 ~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~  203 (633)
T TIGR00805       124 RYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS  203 (633)
T ss_pred             CccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc
Confidence                            001123211000         111111  12366788999999999999999999999999999


Q ss_pred             CChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccc----------------------cchhhHHHHHHHHHHHHHHH
Q 008450          161 KDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEI----------------------SRSVGYGICSVAMFMAIIIF  218 (565)
Q Consensus       161 ~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~----------------------gw~~~f~i~~~~~~~~~~~~  218 (565)
                      ++      |+.++++++....+|.++|+++++++.+.+                      +|+..|++.+++.++..+.+
T Consensus       204 ~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l  277 (633)
T TIGR00805       204 KN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF  277 (633)
T ss_pred             cc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99      999999999999999999999999887532                      27778888777666554444


Q ss_pred             Hhcc
Q 008450          219 LAGT  222 (565)
Q Consensus       219 ~~~~  222 (565)
                      +...
T Consensus       278 ~~~p  281 (633)
T TIGR00805       278 FFFP  281 (633)
T ss_pred             HhCc
Confidence            4443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.70  E-value=2.6e-14  Score=151.32  Aligned_cols=171  Identities=13%  Similarity=0.064  Sum_probs=112.8

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhH--HHHHHHHHHHHHhhh-HHHhhccccchhHHHHHHHHH-HHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANI--VTDFMGTSFLLCLLG-GFLADTFLGRYKTIAIFAAVQ-TLGTGM   98 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~--~~~~~~~~~~~~~~~-G~laDr~~Grr~~~~~~~~~~-~~~~~~   98 (565)
                      .++.+-+.+--..+.++.|++ +.|.+..++|.+  ........++.+|+. ++.+||+ ||||.+++.+.+. .+....
T Consensus         9 ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~~~~~~~   86 (390)
T TIGR02718         9 LYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLVSACLAS   86 (390)
T ss_pred             HHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHHHHHHH
Confidence            445555554555566777765 679999999997  456678887888887 6689998 9999876665332 222222


Q ss_pred             HHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhH
Q 008450           99 LAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  178 (565)
Q Consensus        99 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (565)
                      .+...  +.                  ......+.....+.++..+...+...++..|..++++      ++...+....
T Consensus        87 ~~~~~--~~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~  140 (390)
T TIGR02718        87 LALVG--PD------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIA  140 (390)
T ss_pred             HHcCC--cc------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHH
Confidence            22110  10                  0112233344444556666666666666667666665      7777777777


Q ss_pred             HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhc
Q 008450          179 FISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       179 ~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~  221 (565)
                      +..+|.++|+...+++.+.+|||..|++.+++.++..+..++.
T Consensus       141 g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       141 GVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            7788999998888899999999999999887766555554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.70  E-value=2.3e-15  Score=161.54  Aligned_cols=357  Identities=15%  Similarity=0.130  Sum_probs=229.7

Q ss_pred             HHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhh----ccccchhHH-HHHHHHHHHHHHHH
Q 008450           25 LCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLAD----TFLGRYKTI-AIFAAVQTLGTGML   99 (565)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr~~~-~~~~~~~~~~~~~~   99 (565)
                      +...+.+.....++..|.++.+|+++...+.+.....+..++..|+.|+++|    |+ ||||.. +++.++.+++..++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence            4444555556678899999999999999999999999999999999999999    77 766554 46777777776666


Q ss_pred             HHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHH
Q 008450          100 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  179 (565)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (565)
                      ....  |.              +.........+.+..++..++.........+++.|..++.++     |.+..++-...
T Consensus        90 f~~~--p~--------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~  148 (428)
T PF13347_consen   90 FSPP--PA--------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIF  148 (428)
T ss_pred             hccc--cc--------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHH
Confidence            5430  10              000111334456777777999999999999999999986543     89999998888


Q ss_pred             HHHHHHHHHHHHHHhcccc-------cchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhcccc
Q 008450          180 ISLGTLMAVTVLVYIQDEI-------SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMD  252 (565)
Q Consensus       180 ~~lg~~lg~~i~g~l~~~~-------gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (565)
                      ..+|.++...+.+.+.+..       +|++...+.+++.++..++..+..++.+++.+++++.....             
T Consensus       149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~-------------  215 (428)
T PF13347_consen  149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLR-------------  215 (428)
T ss_pred             HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccc-------------
Confidence            8888866655555544221       68888888777766666555554443111111100000000             


Q ss_pred             CCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcc
Q 008450          253 LPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQ  332 (565)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (565)
                                                                  ..     .+...+.|.+...+.........+.....
T Consensus       216 --------------------------------------------~~-----~~~~~~nr~~~~l~~~~~~~~~~~~~~~~  246 (428)
T PF13347_consen  216 --------------------------------------------DS-----LRSLFRNRPFRILLLAFFLQWLAFALMNT  246 (428)
T ss_pred             --------------------------------------------cc-----hhhhcccchHHHHHHHHHHHHhhhhhhhh
Confidence                                                        00     00011112222222222222222222111


Q ss_pred             cchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 008450          333 MITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL  412 (565)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~  412 (565)
                      ....+.......+ .      ..+.+..+..+..++..++..++.+|+.+|          +.+..+.++..++.+++.+
T Consensus       247 ~~~y~~~~vl~~~-~------~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~----------~~~~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  247 FLPYYFTYVLGNE-G------LISIFMLIFFVASIVGSPLWGRLSKRFGKK----------KVYIIGLLLAALGFLLLFF  309 (428)
T ss_pred             HHHHHHHHHhcCc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHccce----------eehhhhHHHHHHHHHHHHH
Confidence            1112222111111 1      123344556677777888888886666554          2367788888888877766


Q ss_pred             HHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCc-------hhhHHHHHHHHHHHHHHHH
Q 008450          413 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK-------GMKTMSTGLFLTTLSLGFF  485 (565)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~gl~~~~~~lg~~  485 (565)
                      ..                 ..+.+++.+..++.+++.+..++..+++..|..+.       +..|...|++++...++..
T Consensus       310 ~~-----------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~  372 (428)
T PF13347_consen  310 LG-----------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQG  372 (428)
T ss_pred             HH-----------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHH
Confidence            52                 24677888899999999999999999999998873       4579999999999999999


Q ss_pred             HhhHHhhhhhhccc
Q 008450          486 VSSFLVAVVKKVTG  499 (565)
Q Consensus       486 ig~~l~~~l~~~~~  499 (565)
                      +++.+.+.+....+
T Consensus       373 la~~i~g~~l~~~G  386 (428)
T PF13347_consen  373 LAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999998765543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.67  E-value=4.1e-14  Score=152.60  Aligned_cols=150  Identities=15%  Similarity=0.076  Sum_probs=125.6

Q ss_pred             cCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCC
Q 008450           45 TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQA  124 (565)
Q Consensus        45 ~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  124 (565)
                      ++|+...+.+++.++|.++++++.+++|+|.||+ .-.+.+....+...+-.++.+...                     
T Consensus        75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~---------------------  132 (495)
T KOG2533|consen   75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH---------------------  132 (495)
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            4667778999999999999999999999999999 866766666666665555555553                     


Q ss_pred             cchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHh------cccc
Q 008450          125 SGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI------QDEI  198 (565)
Q Consensus       125 ~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l------~~~~  198 (565)
                         +++.+.+.|++.|+..++..|....+++.++.+++      |+..+++++...++|.++|.++...+      ....
T Consensus       133 ---s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~  203 (495)
T KOG2533|consen  133 ---SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA  203 (495)
T ss_pred             ---hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence               37779999999999999999999999999999999      99999999999999999999888775      3457


Q ss_pred             cchhhHHHHHHHHHHHHHHHHhccccc
Q 008450          199 SRSVGYGICSVAMFMAIIIFLAGTKRY  225 (565)
Q Consensus       199 gw~~~f~i~~~~~~~~~~~~~~~~~~~  225 (565)
                      ||||.|++.+++.+...++.++..|..
T Consensus       204 gW~~~FiI~G~i~~~~gi~~f~~lp~~  230 (495)
T KOG2533|consen  204 GWRWLFIIEGVITLVLGIVVFFFLPDN  230 (495)
T ss_pred             CceeehhHHHHHHHHHHheEEEEecCC
Confidence            999999999988776666655555543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.67  E-value=1.9e-14  Score=144.18  Aligned_cols=424  Identities=13%  Similarity=0.074  Sum_probs=234.6

Q ss_pred             HHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008450           29 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQL  108 (565)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~  108 (565)
                      .+.....+.+.+-+...-|.+..|..++......+..+++..+|.++|++ |||+...+..+...+...+.+.+   |  
T Consensus        91 ~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s---p--  164 (528)
T KOG0253|consen   91 AMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS---P--  164 (528)
T ss_pred             HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC---C--
Confidence            34444555566666667788999999999999999999999999999999 99999888777766666666555   3  


Q ss_pred             CCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHH
Q 008450          109 RPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV  188 (565)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~  188 (565)
                                         ++..+.+.|.+.|.|.|+ .|...++-.|..|..+      |....-.. ....+|.+..-
T Consensus       165 -------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea  217 (528)
T KOG0253|consen  165 -------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEA  217 (528)
T ss_pred             -------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHH
Confidence                               377799999999999999 8999999999999998      88777666 77789998888


Q ss_pred             HHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCcccc
Q 008450          189 TVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS  268 (565)
Q Consensus       189 ~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (565)
                      .+.-.+....||||..........+.....+.....-++.--++++.+ ....+....+-++.+.|--....+..|+-+ 
T Consensus       218 ~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k-AletL~kiArmNg~qlplgvl~~s~~~~~e-  295 (528)
T KOG0253|consen  218 LLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYK-ALETLHKIARMNGKQLPLGVLESSAIDRQE-  295 (528)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHH-HHHHHHHHHHhcCCCCCcceeeeehhhhhh-
Confidence            777777788999998776664333332222222211112222333322 223333333434444443222222111100 


Q ss_pred             ccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhh---------
Q 008450          269 RIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVE---------  339 (565)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  339 (565)
                           ++..-+++...-.++     |.+..-  .......-+|..+.....++.....+.....+.+-..+         
T Consensus       296 -----~e~~~~~~~~~~a~k-----e~rg~~--~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~  363 (528)
T KOG0253|consen  296 -----QEESDLDDSKSSAAK-----EVRGGT--TNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYN  363 (528)
T ss_pred             -----hhhhchhhhhhcccc-----ccccch--HhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccch
Confidence                 011111111110001     000000  00001112233222222222222111111111110000         


Q ss_pred             --hhhccccccc-ccccCcchhhhhhh-HHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008450          340 --QATTMERSIG-RFQIPAGSLTVFFV-SAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVER  415 (565)
Q Consensus       340 --~~~~~~~~~~-~~~~~~~~~~~~~~-~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~  415 (565)
                        .+...+.... ...........+.. ..-.-...+.+.++++++||.          .|+..+++.++..+.+..-..
T Consensus       364 r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKk----------TMal~l~~f~iflfll~~c~~  433 (528)
T KOG0253|consen  364 RFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKK----------TMALSLILFGIFLFLLTTCKT  433 (528)
T ss_pred             hcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchh----------HHHHHHHHHHHHHHHHHHhcC
Confidence              0000111000 00000011111111 111111122344556667772          277777777776665543210


Q ss_pred             HHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 008450          416 KRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK  495 (565)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~  495 (565)
                                     ......+++.+-    +.....+...+.|..|..|+..|+++.|.....+.+|+++.|.+. +..
T Consensus       434 ---------------rn~~tvllf~ar----afisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~  493 (528)
T KOG0253|consen  434 ---------------RNAYTVLLFTAR----AFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRA  493 (528)
T ss_pred             ---------------cchhHHHHHHHH----HHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHh
Confidence                           012222233333    333345677899999999999999999999999999999999887 332


Q ss_pred             hcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCCC
Q 008450          496 KVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKP  546 (565)
Q Consensus       496 ~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~~  546 (565)
                      +.+                 ....-.+++++++++.+...++--|+|+|+.
T Consensus       494 e~s-----------------~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  494 ELS-----------------TSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             ccc-----------------eeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            211                 1223467777777777777777777776653

>PTZ00207 hypothetical protein; Provisional

Probab=99.66  E-value=1.1e-13  Score=151.84  Aligned_cols=152  Identities=15%  Similarity=0.071  Sum_probs=120.6

Q ss_pred             HHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008450           37 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  116 (565)
Q Consensus        37 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (565)
                      ...+.+.+++|++..|.+++.+... ......+++|+++||+ |||+++.++.++..+|+++++++.+- .         
T Consensus        48 v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~-~---------  115 (591)
T PTZ00207         48 LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQE-V---------  115 (591)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcc-c---------
Confidence            4556778899999999999987643 4456777899999999 99999999999999999999886210 0         


Q ss_pred             CcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHH-HHHHHHHhc
Q 008450          117 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLM-AVTVLVYIQ  195 (565)
Q Consensus       117 ~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l-g~~i~g~l~  195 (565)
                              -..+++.+++.|++.|+|.+...+.....+.++|| ++      ||.+.++.....++|+++ +++..+++.
T Consensus       116 --------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        116 --------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             --------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    01248889999999999999998999999999997 45      999999999999999875 666666654


Q ss_pred             ccccchhhHHHHHHHHHHHHHH
Q 008450          196 DEISRSVGYGICSVAMFMAIII  217 (565)
Q Consensus       196 ~~~gw~~~f~i~~~~~~~~~~~  217 (565)
                        .+|+..|++.++..++..++
T Consensus       181 --~~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        181 --DNTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             --HhHHHHHHHHHHHHHHHHHH
Confidence              35777787776665544333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.64  E-value=9.2e-14  Score=145.50  Aligned_cols=384  Identities=11%  Similarity=0.078  Sum_probs=215.8

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHH--HHHHH-H
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL--GTGML-A  100 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~--~~~~~-a  100 (565)
                      .++.-+.+=...++.+.+++++.|++..|+|.+.++..+...+.+|+.|.++||. |.||-++..+.+..+  +-... .
T Consensus        16 ~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l~~pff~~v   94 (412)
T PF01306_consen   16 YFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLLFGPFFIYV   94 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHTCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344445568899999988999999999999999999999999999999999 866655443332221  22221 2


Q ss_pred             HHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHH
Q 008450          101 MVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFI  180 (565)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (565)
                      +.   |-+                    -.-+.++-++.++..+.......+.. |.+-   +|..|+.+.=+|...+..
T Consensus        95 ~~---pll--------------------~~n~~lg~iig~i~l~~~f~~~~~~~-Ea~~---er~sr~~~feYG~~R~wG  147 (412)
T PF01306_consen   95 FG---PLL--------------------QSNFWLGAIIGGIYLGLVFNAGVPLS-EAYA---ERVSRRNGFEYGRARMWG  147 (412)
T ss_dssp             HH---HHH--------------------HTT-HHHHHHTTTTTTTTTTTHHHHH-HHHH---HHHHHHHSS-HHHHHHHH
T ss_pred             HH---HHH--------------------HHHHHHHHHHHHHHHHHHHcccchHH-HHHH---HHHHHHhcCCcchHHHHh
Confidence            22   110                    00023333333444444333333333 2221   222333555567778889


Q ss_pred             HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcc
Q 008450          181 SLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGML  260 (565)
Q Consensus       181 ~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (565)
                      ++|.+++..++|++.+ .+-+..||+.....++.+++.+..++..+++.+..+...                        
T Consensus       148 Sig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~------------------------  202 (412)
T PF01306_consen  148 SIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG------------------------  202 (412)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS------------------------
T ss_pred             hHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc------------------------
Confidence            9999999999999886 566788887665555444444444432211111100000                        


Q ss_pred             ccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhh
Q 008450          261 YEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQ  340 (565)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (565)
                                ...++.+..+.                      .+..++++.....+.+......+....+|++..+...
T Consensus       203 ----------~~~~~~~~~~~----------------------~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~  250 (412)
T PF01306_consen  203 ----------AKKDKVSLKDV----------------------LSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASF  250 (412)
T ss_dssp             ----------S------HHHH----------------------HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----------cCCCCCcHHHH----------------------HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      00000000000                      0112233333322222223333333334433332211


Q ss_pred             hhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008450          341 ATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSV  420 (565)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~  420 (565)
                         .+..-.+.. -.+.++++..+.-.+...+..+++.|++.|          +.+.++..++.+-....++.       
T Consensus       251 ---f~~~~~g~~-~~G~l~s~~v~~E~~~m~~~p~li~rig~k----------~~Lllag~i~~iRi~~~~~~-------  309 (412)
T PF01306_consen  251 ---FQSAGQGNQ-MYGYLWSVQVFLEALMMFFSPWLINRIGAK----------NLLLLAGVIMAIRIIGSGFA-------  309 (412)
T ss_dssp             ---SSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----------HHHHHHHHHHHHHHHHHHT--------
T ss_pred             ---hcccccChh-HHhHHHHHHHHHHHHHHHHHHHHHHhcChH----------hHHHHHHHHHHHHHHHHhhh-------
Confidence               211100000 122334444444445555555554444443          45777777788887777653       


Q ss_pred             hhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHH-HHHHHHHHHHhhHHhhhhhhccc
Q 008450          421 ARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLF-LTTLSLGFFVSSFLVAVVKKVTG  499 (565)
Q Consensus       421 ~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~lg~~ig~~l~~~l~~~~~  499 (565)
                                  .+++++.+...+.++-..+......-|+.+.+|++..++...+. ++..++|..+.+.+.|.+++.. 
T Consensus       310 ------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-  376 (412)
T PF01306_consen  310 ------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-  376 (412)
T ss_dssp             -------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-
T ss_pred             ------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-
Confidence                        46677888999999999999999999999999999999998885 6778999999999999887532 


Q ss_pred             CCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 008450          500 SKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWY  541 (565)
Q Consensus       500 ~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~  541 (565)
                                     ++...|++++++.+...++..+..++.
T Consensus       377 ---------------G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  377 ---------------GFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             ---------------CcHHHHHHHHHHHHHHHHHheeeecCC
Confidence                           245678888888877777766665443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.64  E-value=8.6e-14  Score=140.19  Aligned_cols=365  Identities=16%  Similarity=0.217  Sum_probs=243.3

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      +.+..|...- ....+.+-+++++|+|.+++|.+++.-.+...+.+++..+|+.|+ |..+.+..++++..+|.++=...
T Consensus        20 ia~NLR~~it-svgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~   97 (395)
T COG2807          20 IAFNLRPAIT-SVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG   97 (395)
T ss_pred             HHhccchhhh-hhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc
Confidence            4444454433 345566778899999999999999999999999999999999999 99999999999999998876543


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                                               +...++.+-.+.|.|.+......++++.+.||++       .+..+++|.+..++
T Consensus        98 -------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~  145 (395)
T COG2807          98 -------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGA  145 (395)
T ss_pred             -------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHH
Confidence                                     2567899999999999999999999999999887       58889999999999


Q ss_pred             HHHHHHHHHHHhcccc-cchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccc
Q 008450          183 GTLMAVTVLVYIQDEI-SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLY  261 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~-gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (565)
                      |+++++.+...+.++. |||....+=+...++++++++....|.  +.++.....                   .     
T Consensus       146 ~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~--~~~~~~~~~-------------------~-----  199 (395)
T COG2807         146 GAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALRE--QAASIATKL-------------------V-----  199 (395)
T ss_pred             HHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhcccc--ccccccccc-------------------c-----
Confidence            9999999999888877 799999888888888877766643221  111100000                   0     


Q ss_pred             cCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhh
Q 008450          262 EDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQA  341 (565)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (565)
                                                      +.++-|        +++......+.+-.-+..++..+.+++..+..+.
T Consensus       200 --------------------------------~~~~vw--------~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G  239 (395)
T COG2807         200 --------------------------------SVRKVW--------RSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRG  239 (395)
T ss_pred             --------------------------------cccccc--------cCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence                                            000011        1111121222233444555666666666554432


Q ss_pred             hcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008450          342 TTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVA  421 (565)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~  421 (565)
                        ++..      ..+++.++..+..+....+...+    .+|.+     +.+.......+++.+++.-+.+.        
T Consensus       240 --~sa~------~aG~llsl~~l~~~~~~ll~P~l----a~R~~-----n~r~~~~~~~~~~l~G~~G~~~~--------  294 (395)
T COG2807         240 --LSAA------EAGSLLSLMQLAQLPTALLIPLL----ARRSK-----NQRPLVVLALLLMLVGLVGLLLA--------  294 (395)
T ss_pred             --CCHH------HhhhHHHHHHHHHHHHHHHHHHH----HHHhc-----ccchHHHHHHHHHHHHHHHHHHh--------
Confidence              2222      23444444444444444333334    33311     23344566666666666655443        


Q ss_pred             hhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCc-hhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccC
Q 008450          422 RAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK-GMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGS  500 (565)
Q Consensus       422 ~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~  500 (565)
                                +.+.+++-  .++.|+|.+..+|....++...+.+ +..++-+|+.+....+=.++||.+.|.+.+.++ 
T Consensus       295 ----------P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g-  361 (395)
T COG2807         295 ----------PGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG-  361 (395)
T ss_pred             ----------hhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC-
Confidence                      11211111  4889999999999988888777644 556677888888888888999999999876553 


Q ss_pred             CCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008450          501 KGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAV  539 (565)
Q Consensus       501 ~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~  539 (565)
                          +|          ...+..++.+.++..+..+...|
T Consensus       362 ----sw----------~~~~~~l~~~~i~m~i~Gl~a~r  386 (395)
T COG2807         362 ----SW----------SAPLVLLALATLLMLIFGLRAGR  386 (395)
T ss_pred             ----Ch----------HHHHHHHHHHHHHHHHHHhhcch
Confidence                44          34455555555555555444433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.63  E-value=4.7e-14  Score=153.40  Aligned_cols=419  Identities=15%  Similarity=0.089  Sum_probs=254.6

Q ss_pred             hHHHHHHHhHHHHHH---HHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVN---LVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGML   99 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~---l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~   99 (565)
                      ..|...+..+|+...   +-..+.++++-+..+++|+.++......+..|+.+.+.||+ |.|++.+.|.++..+|.++.
T Consensus        50 a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~~ls  128 (509)
T KOG2504|consen   50 ASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGLLLS  128 (509)
T ss_pred             hHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHHHHH
Confidence            455555666665543   45667788999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHhhhcccCCCCCCCCCcccccCCcchhHHHHH-HHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhH
Q 008450          100 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLY-IALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  178 (565)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (565)
                      +++++                        .+.++ ..=++.|+|.|+.+......+..+|+.+       |+.+.++-..
T Consensus       129 sF~~~------------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~  177 (509)
T KOG2504|consen  129 SFATS------------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVS  177 (509)
T ss_pred             HHHhh------------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhc
Confidence            99955                        44444 4455579999999999999999877544       8999999888


Q ss_pred             HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcC
Q 008450          179 FISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVG  258 (565)
Q Consensus       179 ~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (565)
                      +..+|.++=|.+.-++.+.+|||+.+++.+.+.+-........+|...++++.++  ++.        ++.....+....
T Consensus       178 GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~--~~~--------~~~~~~~~~~~~  247 (509)
T KOG2504|consen  178 GTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEE--KDL--------RNSAASVESTPK  247 (509)
T ss_pred             cCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhh--hhh--------cccccccccccc
Confidence            8899988888999999999999999999887776666666665553333222200  000        000000000000


Q ss_pred             ccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCc-c---ccchhhHhHhHHHhHHHHHHHHHHHHhhhcccc
Q 008450          259 MLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWK-L---CSVTSVEEVKMVARLLPIWATTIIFWTTYAQMI  334 (565)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (565)
                      . .+.+..+....+.. ......... ....  +..+..+-+ .   ...+..+++..+...+...+....+......+ 
T Consensus       248 ~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l-  321 (509)
T KOG2504|consen  248 P-VELRISERDSGLKK-LSLSNLATL-KRGP--DKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYL-  321 (509)
T ss_pred             c-cccccccCCCCCCc-ccccchhhh-hhCC--ccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-
Confidence            0 00000000000000 000000000 0000  000000000 0   01222333222222111111111111111111 


Q ss_pred             hhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008450          335 TFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVE  414 (565)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~  414 (565)
                      ..+.. ....+      ....+...++..+..+++-++.+.+.|+...        +......++++..+++..+..+  
T Consensus       322 ~~~~~-~~g~~------~~~aa~l~Siigi~~i~gRi~~G~laD~~~~--------~~~~~~~~~ll~~gl~~~~~p~--  384 (509)
T KOG2504|consen  322 PSYAK-SLGLS------SNDAAFLLSIIGVSDIIGRIILGLLADKPGI--------RALVLFLLTLLIAGLARLFLPF--  384 (509)
T ss_pred             HHHHh-hcCCC------hhhhHHHHHHHHHhhhhhhhhhhhhcCcccc--------chHHHHHHHHHHHHHHHHHHHH--
Confidence            11111 11111      1123344555556666666666666443331        2233455666666666655444  


Q ss_pred             HHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhh
Q 008450          415 RKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVV  494 (565)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l  494 (565)
                                       ..++..++...++.|+..+...........+..+.+.-..+.|+..++..++..+|+.+.+.+
T Consensus       385 -----------------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~  447 (509)
T KOG2504|consen  385 -----------------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLL  447 (509)
T ss_pred             -----------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceee
Confidence                             234566777888888888888777778889999999999999999999999999999999977


Q ss_pred             hhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhh
Q 008450          495 KKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICA  538 (565)
Q Consensus       495 ~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~  538 (565)
                      .+.++               +|...|...+++.+++.+..+...
T Consensus       448 ~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  448 YDITG---------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeccC---------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            64432               245567888888888877766665

>PRK11462 putative transporter; Provisional

Probab=99.63  E-value=1.9e-13  Score=148.04  Aligned_cols=175  Identities=12%  Similarity=0.115  Sum_probs=124.0

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcc---ccchhHHH-HHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF---LGRYKTIA-IFAAVQTLGTGM   98 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~-~~~~~~~~~~~~   98 (565)
                      -++...+.+..+..++..|.++.+|+++..+|.+....-+.-++.-|+.|+++||.   +||||..+ ++.+..+++..+
T Consensus        17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l   96 (460)
T PRK11462         17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL   96 (460)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence            44455566666677899999999999999999999999999999999999999973   37765555 566777777665


Q ss_pred             HHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhH
Q 008450           99 LAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  178 (565)
Q Consensus        99 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (565)
                      +-..   |..               ........+++.-.+..++.........++.+|..++.+|     |+++.++...
T Consensus        97 lf~~---p~~---------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s~r~~  153 (460)
T PRK11462         97 AYST---PDL---------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQSWRFV  153 (460)
T ss_pred             HHhC---CCC---------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHHHHHH
Confidence            5433   210               1112344455666667888888888888999999876553     9999999988


Q ss_pred             HHHHHHHHHHHHHHHhccc-------ccchhhHHHHHHHHHHHHHHHHh
Q 008450          179 FISLGTLMAVTVLVYIQDE-------ISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       179 ~~~lg~~lg~~i~g~l~~~-------~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      ..++|..+++.+...+...       .+|+....+.+++.+++..+.+.
T Consensus       154 ~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~  202 (460)
T PRK11462        154 LATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF  202 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            8888887776665444332       25666666655554444434333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.56  E-value=8.3e-12  Score=135.06  Aligned_cols=367  Identities=17%  Similarity=0.115  Sum_probs=201.4

Q ss_pred             hhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHH-HHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHH
Q 008450           53 SANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAI-FAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGV  131 (565)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (565)
                      .+...++..+..++..|+-|-++|+- |+||-++. ...+..+.+.++.+. + |                    .++..
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v-~-~--------------------~~~~~  128 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFV-S-P--------------------GQWWL  128 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHh-C-c--------------------chHHH
Confidence            35667888899999999999999998 66655554 444555566666665 1 1                    13444


Q ss_pred             HHHHHHHHHHhccccccchhhhhhccCCCCChH--------------------hhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          132 LYIALYLIALGTGGLKSSVSGFGTDQFDEKDEK--------------------EKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       132 l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~--------------------~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                      ..+.-++.-++.+......++++.|..++++..                    +...|++..+.-+...++|.++..++.
T Consensus       129 ~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~  208 (477)
T PF11700_consen  129 ALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLIS  208 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHH
Confidence            444444555677777788899999998877620                    111128888888888888888876554


Q ss_pred             HHhcc--------cccchhhHHHHHHHHHHHHHH-HHhcccccc-ccCCCCCc-hHHHHHHHHHHHHhccccCCCCcCcc
Q 008450          192 VYIQD--------EISRSVGYGICSVAMFMAIII-FLAGTKRYR-YKKSSGSP-IVHIFQVIVAAIKKRKMDLPCNVGML  260 (565)
Q Consensus       192 g~l~~--------~~gw~~~f~i~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (565)
                      -.+..        ..+.|..+.+.++-.++..+- ++..+++-+ +..|.+.. .....+.+...+|+            
T Consensus       209 l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~------------  276 (477)
T PF11700_consen  209 LLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKE------------  276 (477)
T ss_pred             HHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHH------------
Confidence            43321        123477777776654443333 333333211 11111111 11112222222211            


Q ss_pred             ccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhh
Q 008450          261 YEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQ  340 (565)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (565)
                                                                    .++.|.+...+..+....-.......+...+..+
T Consensus       277 ----------------------------------------------~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~  310 (477)
T PF11700_consen  277 ----------------------------------------------IRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATE  310 (477)
T ss_pred             ----------------------------------------------HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                          1111222211111111111111111122222222


Q ss_pred             hhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008450          341 ATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSV  420 (565)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~  420 (565)
                      ...++..      ....+..+..+..++...+++++.+++..|.+        +.+.++.++. ....+.+++.....  
T Consensus       311 ~lg~s~~------~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~--------~~l~~~l~~~-~~i~~~g~~G~~~~--  373 (477)
T PF11700_consen  311 VLGMSTT------QLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK--------RTLLISLILW-IIIPLYGLFGFWPS--  373 (477)
T ss_pred             hcCcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--------HHHHHHHHHH-HHHHHHHHHHhhhc--
Confidence            2222211      11223333445555555666666444444311        2222222222 22222222210000  


Q ss_pred             hhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccC
Q 008450          421 ARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGS  500 (565)
Q Consensus       421 ~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~  500 (565)
                        .-|      ..+.+.+.+..++.|+..+...+.+-++..++.|++..+...|++.+.....+.+||.+.+.+...+++
T Consensus       374 --~~g------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~  445 (477)
T PF11700_consen  374 --FFG------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS  445 (477)
T ss_pred             --ccC------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence              000      223444566677889999999999999999999999999999999999999999999999998765532


Q ss_pred             CCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhh
Q 008450          501 KGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVW  540 (565)
Q Consensus       501 ~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~  540 (565)
                                     ....+..+.++.++++++.+.+..+
T Consensus       446 ---------------~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  446 ---------------QRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             ---------------chhHHHHHHHHHHHHHHHHhhccch
Confidence                           2344677777888887777666444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.56  E-value=8.3e-12  Score=128.85  Aligned_cols=379  Identities=16%  Similarity=0.196  Sum_probs=224.9

Q ss_pred             hhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcccc-----ch-hHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008450           42 LVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLG-----RY-KTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE  115 (565)
Q Consensus        42 l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  115 (565)
                      +..|++++..-.+.+++...+.+. .++..|+.+|+. +     || +-+..+..++..+..+.+++.-+-.        
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--------   75 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--------   75 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--------
Confidence            456899998888888888777776 588999999998 7     66 4455567777777777766522111        


Q ss_pred             CCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhc
Q 008450          116 TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  195 (565)
Q Consensus       116 ~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~  195 (565)
                      +.-.-.+.+.........++.++.|+|.+....+..++++|..||++      |+++.++.+.+.-+|.+++.++.|.+.
T Consensus        76 ~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL  149 (403)
T PF03209_consen   76 ESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLL  149 (403)
T ss_pred             ccccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            00000122222344556677778999999999999999999999999      999999999999999999999999888


Q ss_pred             ccccchhhHHH----HHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccC
Q 008450          196 DEISRSVGYGI----CSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIH  271 (565)
Q Consensus       196 ~~~gw~~~f~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (565)
                      +.++..-..-+    ..+..++.++..+-..++.++..+..++                                     
T Consensus       150 ~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~-------------------------------------  192 (403)
T PF03209_consen  150 DPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAER-------------------------------------  192 (403)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCC-------------------------------------
Confidence            87763322222    2222222233333333332221100000                                     


Q ss_pred             CCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhccccccccc
Q 008450          272 HTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRF  351 (565)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (565)
                        ++..+.+...... .                  ..+-++++..  ++.....+++.-..+ -.|--+...++..    
T Consensus       193 --~~~~f~~a~~~~~-~------------------~~~a~~f~~f--l~l~t~a~~~QD~iL-EPygg~Vfgmsv~----  244 (403)
T PF03209_consen  193 --PRPPFREAWRQVW-A------------------SPQARRFFVF--LFLGTLAFFMQDVIL-EPYGGEVFGMSVG----  244 (403)
T ss_pred             --CCccHHHHHHHHH-h------------------CCChhHHHHH--HHHHHHHHHhhHHHc-CCchhHHcCCCHH----
Confidence              0001111100000 0                  0011222211  222222222211111 1121111111111    


Q ss_pred             ccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCc
Q 008450          352 QIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATL  431 (565)
Q Consensus       352 ~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (565)
                        .+..++.......++...+.+++..|   |      .++.+.-.+|...+.+++..+.+...                
T Consensus       245 --eTT~Lta~~~~G~L~G~~~~g~~l~~---~------~~~~~~a~~G~~~~~~~f~lii~a~~----------------  297 (403)
T PF03209_consen  245 --ETTRLTAFWGGGTLLGMLLAGFLLSR---R------LGKKRTAALGCLLGALAFALIILAGP----------------  297 (403)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhcC---C------CCchHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence              12345555566666666666666432   2      22233456677777777776655422                


Q ss_pred             ceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCcccccc
Q 008450          432 PVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNI  511 (565)
Q Consensus       432 ~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~  511 (565)
                      ..+.+.+....++.|++.+.......+...+..+++..|+.+|.+...+.++..++..+++.+.+....     +.+ +-
T Consensus       298 ~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~-----~~~-~~  371 (403)
T PF03209_consen  298 LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA-----LFG-NS  371 (403)
T ss_pred             cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc-CC
Confidence            335667778999999999999999999999999999999999999999999999999998887654431     111 10


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHH
Q 008450          512 NRGRLDLFYGLLAILSIINLVIY  534 (565)
Q Consensus       512 ~~~~~~~~f~~~a~l~lv~~~~~  534 (565)
                      ....|...|.+=+++.++++.+.
T Consensus       372 ~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  372 PALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHH
Confidence            11235555555555555555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.55  E-value=5.9e-14  Score=135.95  Aligned_cols=363  Identities=14%  Similarity=0.234  Sum_probs=227.5

Q ss_pred             HHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 008450           38 LVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETA  117 (565)
Q Consensus        38 l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  117 (565)
                      +..+...+.+.+.++..++.+.|..-..+.+.++||+.||.+|-|..-++-.....+|.+.++...-.+           
T Consensus        66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~-----------  134 (459)
T KOG4686|consen   66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISH-----------  134 (459)
T ss_pred             hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHH-----------
Confidence            578888889999999999999999999999999999999988988766666667777888777652222           


Q ss_pred             cccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccc
Q 008450          118 THTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE  197 (565)
Q Consensus       118 ~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~  197 (565)
                                .++.+..+|++.|+|.--...+.+.+...+|..++      .+.+++++.....+|..+-..+-+++.+.
T Consensus       135 ----------aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  135 ----------AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             ----------HHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence                      48999999999999988888899999999999999      99999999988888887776666666654


Q ss_pred             ccchh--------hH--HHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccc
Q 008450          198 ISRSV--------GY--GICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEA  267 (565)
Q Consensus       198 ~gw~~--------~f--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (565)
                      .+--.        ..  .+....+...++.......  .++     ..+.+            +.               
T Consensus       199 ~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~--~D~-----rAeri------------lh---------------  244 (459)
T KOG4686|consen  199 MGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGL--SDD-----RAERI------------LH---------------  244 (459)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhh-----HHHHH------------Hh---------------
Confidence            33100        00  1111122222222111100  000     00000            00               


Q ss_pred             cccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHH------HHHhhhcccchhhhhhh
Q 008450          268 SRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTI------IFWTTYAQMITFSVEQA  341 (565)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  341 (565)
                          ..             ++..+  |         ..+..+++.+.  .+++...+      +.|.-+......+.   
T Consensus       245 ----~e-------------~g~~G--e---------~pkLtdv~~f~--ppfw~~~iicv~yyva~fPFi~lg~~fF---  291 (459)
T KOG4686|consen  245 ----LE-------------EGFLG--E---------EPKLTDVNTFY--PPFWVLVIICVLYYVAWFPFITLGPMFF---  291 (459)
T ss_pred             ----hh-------------cCccc--C---------CcccccccccC--ccHHHHHHHHHHHHHHHHHHhhhhHHHH---
Confidence                00             00000  0         00011111111  11111111      11112222222221   


Q ss_pred             hcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008450          342 TTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVA  421 (565)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~  421 (565)
                         ..+.+-.....+-+.+.-..+..+..|+++.++|+.+++...         ++.+.+....+-..+.+..       
T Consensus       292 ---~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~w---------v~~a~~~tl~~H~~l~Ft~-------  352 (459)
T KOG4686|consen  292 ---QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWW---------VASACILTLLGHSGLFFTF-------  352 (459)
T ss_pred             ---HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehh---------HHHHHHHHHHHhhhHHhhh-------
Confidence               112221122333445555566778889999999998887542         5666666666666555432       


Q ss_pred             hhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCC
Q 008450          422 RAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSK  501 (565)
Q Consensus       422 ~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~  501 (565)
                                 .++   -.+..+.|....+.....|-.+...+|++.-|++-|..+...++|-++.+.+.+.+.+..+  
T Consensus       353 -----------lsP---y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g--  416 (459)
T KOG4686|consen  353 -----------LSP---YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG--  416 (459)
T ss_pred             -----------ccH---HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC--
Confidence                       222   3456677888888888889999999999999999999999999999999999998754221  


Q ss_pred             CCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008450          502 GGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAV  539 (565)
Q Consensus       502 ~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~  539 (565)
                         ++       .+...+|.....+++++..+.+.+-+
T Consensus       417 ---~y-------~~le~ffl~~~~~aL~svgil~~~N~  444 (459)
T KOG4686|consen  417 ---SY-------DNLEAFFLIIGLMALTSVGILFYLNK  444 (459)
T ss_pred             ---ch-------hhHHHHHHHHHHHHHHHHHHHhheec
Confidence               11       22456666777777776666555533

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.49  E-value=2e-11  Score=129.34  Aligned_cols=358  Identities=15%  Similarity=0.156  Sum_probs=223.0

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcc---ccchh-HHHHHHHHHHHHHHHH
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF---LGRYK-TIAIFAAVQTLGTGML   99 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~~~~~~~~~~~~~~~~   99 (565)
                      .+...+.+.-+..++..|.++..|+++..+|.+...--+.=++.-|+.|.+.||.   .||+| -++.+.+.+++.+.++
T Consensus        21 d~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~  100 (467)
T COG2211          21 DFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLL  100 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHH
Confidence            3445567777888999999999999999999999999999999999999999974   26554 4555667788887777


Q ss_pred             HHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHH
Q 008450          100 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  179 (565)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (565)
                      -.+..                .+  ...+....++.-.+.+++.....-...++.++.-++.+|     |.+..++-...
T Consensus       101 F~~p~----------------~~--~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R~~l~s~R~~~  157 (467)
T COG2211         101 FITPD----------------FS--MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----RASLTSWRMVF  157 (467)
T ss_pred             HcCCC----------------cc--cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----HHHHHHHHHHH
Confidence            66621                00  113455566777778899999988889999998876654     99999999988


Q ss_pred             HHHHHHHHHHHHHHhcc-------cccchhhHHHHHHHHHHHHHHHHhccccccc-cCCCCCchHHHHHHHHHHHHhccc
Q 008450          180 ISLGTLMAVTVLVYIQD-------EISRSVGYGICSVAMFMAIIIFLAGTKRYRY-KKSSGSPIVHIFQVIVAAIKKRKM  251 (565)
Q Consensus       180 ~~lg~~lg~~i~g~l~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  251 (565)
                      .++|.++...+.+.+..       ..||+..-++.+++..+.++..++..++... ..+..+...               
T Consensus       158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~---------------  222 (467)
T COG2211         158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVK---------------  222 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccc---------------
Confidence            88887766555554432       3467766666666655555554444332211 111100000               


Q ss_pred             cCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhc
Q 008450          252 DLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYA  331 (565)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (565)
                                              .++.+..                      ......|.+...+...+   +.+...+
T Consensus       223 ------------------------~~~~~~~----------------------~~~~~Nrp~~~~l~~~l---~~~~~~~  253 (467)
T COG2211         223 ------------------------LKLKDSF----------------------LLIFKNRPLLLLLLMNL---LLFIAFN  253 (467)
T ss_pred             ------------------------ccHHHHH----------------------HHHHccchHHHHHHHHH---HHHHHHH
Confidence                                    0000000                      00112222222222222   2222222


Q ss_pred             ccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 008450          332 QMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAA  411 (565)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~  411 (565)
                      ...+.+.+.   ....++.....+...........++..+++.++..++.+|          +.+.+|.++..++.+.+.
T Consensus       254 i~~s~~~yy---~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk----------~~~~~~~~~~~i~~~~~~  320 (467)
T COG2211         254 IRGSIMVYY---VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK----------KLFLIGLLLLAVGYLLLY  320 (467)
T ss_pred             HHhhhhhee---EEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH----------HHHHHHHHHHHHHHHHHH
Confidence            222221111   1111111111122233333444444456666664444443          457788888888887776


Q ss_pred             HHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCc-------hhhHHHHHHHHHHHHHHH
Q 008450          412 LVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK-------GMKTMSTGLFLTTLSLGF  484 (565)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~gl~~~~~~lg~  484 (565)
                      +..                 ..+..++++..++.++|.+...+..++++.|.+.-       +..|...|.+.+..=+|.
T Consensus       321 f~~-----------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~  383 (467)
T COG2211         321 FTP-----------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGL  383 (467)
T ss_pred             hhc-----------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            641                 23566667777899999999999999999988643       567888999999999999


Q ss_pred             HHhhHHhhhhhhcc
Q 008450          485 FVSSFLVAVVKKVT  498 (565)
Q Consensus       485 ~ig~~l~~~l~~~~  498 (565)
                      +++..+.+++....
T Consensus       384 ala~~~~g~~L~~~  397 (467)
T COG2211         384 ALAGFIPGWILGAI  397 (467)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999888876543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.35  E-value=3.1e-12  Score=113.41  Aligned_cols=135  Identities=18%  Similarity=0.245  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHH
Q 008450           56 IVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIA  135 (565)
Q Consensus        56 ~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  135 (565)
                      +.+.+.++..++.++.|+++||+ |||+.+..+..+..++.++.....                        +.+.+.+.
T Consensus         3 ~~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~   57 (141)
T TIGR00880         3 LLAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS------------------------NITVLIIA   57 (141)
T ss_pred             EEEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc------------------------cHHHHHHH
Confidence            44567788999999999999999 999999999888888887777652                        26778889


Q ss_pred             HHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Q 008450          136 LYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAI  215 (565)
Q Consensus       136 r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~  215 (565)
                      +++.|++.+...+....++.|.+|+++      |++..++.+...++|..+++.+.+++.+..+|++.|++.++..+++.
T Consensus        58 ~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (141)
T TIGR00880        58 RFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAF  131 (141)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998      99999999999999999999999999998999999998877666655


Q ss_pred             HHHHhc
Q 008450          216 IIFLAG  221 (565)
Q Consensus       216 ~~~~~~  221 (565)
                      +.....
T Consensus       132 ~~~~~~  137 (141)
T TIGR00880       132 ILLAFL  137 (141)
T ss_pred             HHHhhc
Confidence            554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.35  E-value=6.1e-10  Score=114.96  Aligned_cols=131  Identities=16%  Similarity=0.060  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhhhcCCC---Cc----hhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008450           33 GIAVNLVTYLVGTMHL---PS----ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKL  105 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~---s~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~  105 (565)
                      .+...+++|+++..+-   ++    +-.+...++..+..++.+|+-|.++|+.+-||+.+.+...+..+.+.++.++.+ 
T Consensus        33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~-  111 (438)
T COG2270          33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP-  111 (438)
T ss_pred             eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence            3455688888886544   22    344566677788899999999999999944555666666666667777777621 


Q ss_pred             cccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHH
Q 008450          106 RQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTL  185 (565)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  185 (565)
                                          +.+++...+...+..++.........+++.|..++++      .++..++-+....+|..
T Consensus       112 --------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~  165 (438)
T COG2270         112 --------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSV  165 (438)
T ss_pred             --------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccch
Confidence                                1346777778888899999999999999999999888      78888887777778776


Q ss_pred             HHHHH
Q 008450          186 MAVTV  190 (565)
Q Consensus       186 lg~~i  190 (565)
                      +..++
T Consensus       166 i~li~  170 (438)
T COG2270         166 ILLIF  170 (438)
T ss_pred             HHHHH
Confidence            65444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.33  E-value=1.4e-11  Score=133.84  Aligned_cols=167  Identities=14%  Similarity=0.075  Sum_probs=125.7

Q ss_pred             HHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 008450           25 LCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTK  104 (565)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~  104 (565)
                      +|....+++...+++.|+++.+|++..+.++..+.+.++..++.+++|+++||+ |||+.+........++..+..+.. 
T Consensus       268 ~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~~~~~~~~~-  345 (467)
T PRK09556        268 IFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALIIFTLGVYQH-  345 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHHHHHHh-
Confidence            444455667778899999999999999999999999999999999999999999 998877665544444333222221 


Q ss_pred             hcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH-H
Q 008450          105 LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL-G  183 (565)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-g  183 (565)
                       .                    .+...+.+.+++.|++..+..........|.+|++.      |+.+.++.+...++ |
T Consensus       346 -~--------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~~g~l~g  398 (467)
T PRK09556        346 -A--------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGTFAYLFG  398 (467)
T ss_pred             -c--------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHHHHHHHh
Confidence             0                    124456677777776544333333456679999988      99999999999886 7


Q ss_pred             HHHHHHHHHHhcc------------cccchhhHHHHHHHHHHHHHHHHh
Q 008450          184 TLMAVTVLVYIQD------------EISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       184 ~~lg~~i~g~l~~------------~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      .+++|.+.|++.+            ..+|+..|++.+++.+++.+..+.
T Consensus       399 ~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        399 DSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999            678999999887776666555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.32  E-value=2.3e-11  Score=128.92  Aligned_cols=163  Identities=13%  Similarity=0.085  Sum_probs=132.2

Q ss_pred             HHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008450           28 RLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQ  107 (565)
Q Consensus        28 ~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~  107 (565)
                      .+++.....+++.|+. +.|.  .+.++..+.+.++..++.++.|++.||+ ||||.+..+..+..++..+.++.+    
T Consensus       229 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~----  300 (399)
T PRK05122        229 SIGFGTIATFITLYYA-ARGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP----  300 (399)
T ss_pred             HHHHHHHHHHHHHHHH-Hccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc----
Confidence            3455556667777775 4465  3456777888889999999999999999 999999988888888777766652    


Q ss_pred             cCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHH
Q 008450          108 LRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMA  187 (565)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg  187 (565)
                                          +.+.+.+.+++.|++.+...+.......|..|+++      |+++.++++...++|..++
T Consensus       301 --------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~  354 (399)
T PRK05122        301 --------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGIT  354 (399)
T ss_pred             --------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHH
Confidence                                25567788899999999888888888889888887      9999999999999999999


Q ss_pred             HHHHHHhcccccchhhHHHHHHHHHHHHHHHHhcccc
Q 008450          188 VTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKR  224 (565)
Q Consensus       188 ~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  224 (565)
                      +.+.|++.+..||++.|++.+++.++++++.+...++
T Consensus       355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        355 GPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999888777776666555443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.32  E-value=5.3e-11  Score=130.12  Aligned_cols=167  Identities=12%  Similarity=0.128  Sum_probs=124.9

Q ss_pred             HHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008450           26 CERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKL  105 (565)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~  105 (565)
                      +....+|++..+++.|+++.+|++..+.++......++..++.+++|+++||+ |||+++.++.+...++.+.+..... 
T Consensus       261 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~-  338 (490)
T PRK10642        261 ATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFVLAIPAFILIN-  338 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            34466788888999999888999988888888888899999999999999999 9999988877654444333222101 


Q ss_pred             cccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHH
Q 008450          106 RQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTL  185 (565)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  185 (565)
                       .                   .+...+++++++.|++.+...+....++.+.+|++.      |+++.++.+....++..
T Consensus       339 -~-------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~~~~~~~g~  392 (490)
T PRK10642        339 -S-------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAAFNISVLVAG  392 (490)
T ss_pred             -C-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHHHHHHHHHHH
Confidence             0                   125567788888888877777778888899999999      99999986555666677


Q ss_pred             HHHHHHHHhcccc-cchhhHHHHHHHHHHHHHHHHh
Q 008450          186 MAVTVLVYIQDEI-SRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       186 lg~~i~g~l~~~~-gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      ++|.+.+++.+.. +|+.++++..+..+++++..++
T Consensus       393 ~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  428 (490)
T PRK10642        393 LTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT  428 (490)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            8899999887754 4676666555554444444444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.31  E-value=4e-11  Score=127.24  Aligned_cols=160  Identities=13%  Similarity=0.129  Sum_probs=125.9

Q ss_pred             HhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccC
Q 008450           30 STMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLR  109 (565)
Q Consensus        30 ~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~  109 (565)
                      .++....+++.|+++++|++..+.+++.+...+...++.+++|+++||+ |||+.+..+.....+........+      
T Consensus       231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~------  303 (393)
T PRK15011        231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGMLMAH------  303 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHh------
Confidence            3344446788899999999999999998888888888999999999999 999988776655544433333331      


Q ss_pred             CCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHH
Q 008450          110 PRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVT  189 (565)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~  189 (565)
                                        +...+.+.+++.+++.|...+....+..|.+|+ +      |+++.++++...++|..+|+.
T Consensus       304 ------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~~~lg~~~g~~  358 (393)
T PRK15011        304 ------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNTSRVGWIIAGS  358 (393)
T ss_pred             ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHHHHHHHHHHHH
Confidence                              255567788888777777767777888888874 4      788999998889999999999


Q ss_pred             HHHHhcccccchhhHHHHHHHHHHHHHHHHhc
Q 008450          190 VLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       190 i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~  221 (565)
                      ++|++.+..||+..|++.+++.+++++..+..
T Consensus       359 l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        359 LAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            99999998999999998877777666665543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.30  E-value=3.1e-11  Score=129.26  Aligned_cols=163  Identities=12%  Similarity=0.075  Sum_probs=129.3

Q ss_pred             HHHHHHHHHhhhcCCCC--------chhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 008450           33 GIAVNLVTYLVGTMHLP--------SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTK  104 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~s--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~  104 (565)
                      ....+++.|+. +.|.+        ..+.+.+.+...+...++.++.|+++||+ |||+++.++.++..++..+......
T Consensus       226 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~v~~~l~~~~~~  303 (418)
T TIGR00889       226 ITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWALRFGFFAYGDP  303 (418)
T ss_pred             HHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCc
Confidence            34455566765 44543        36678999999999999999999999999 9999999999988888766665311


Q ss_pred             hcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhh-HHHHHH
Q 008450          105 LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF-FFISLG  183 (565)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lg  183 (565)
                        +                  ....+.+++.+++.|++.+...+....++.|.+|+++      |++++++.+ ...++|
T Consensus       304 --~------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg  357 (418)
T TIGR00889       304 --E------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFG  357 (418)
T ss_pred             --c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhH
Confidence              0                  0124667788999999999988999999999999998      999999997 567899


Q ss_pred             HHHHHHHHHHhccc------ccchhhHHHHHHHHHHHHHHHHhccc
Q 008450          184 TLMAVTVLVYIQDE------ISRSVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       184 ~~lg~~i~g~l~~~------~gw~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      .++||+++|++.+.      .||+.+|.+.+++.+++.++.++..+
T Consensus       358 ~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       358 SLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999887      46999999887776666555555444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.29  E-value=2.9e-11  Score=125.92  Aligned_cols=154  Identities=14%  Similarity=0.107  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      .......++|. +++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.++..+.++       
T Consensus       222 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------  292 (377)
T TIGR00890       222 LLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMAAMLFIPM-------  292 (377)
T ss_pred             HHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHccc-------
Confidence            33444555664 57899999999999999999999999999999999 9999999998888888777766521       


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                     .....+++..++.+++.+...+..+.++.|.+|+++      |++++++++...++|..++|.+.
T Consensus       293 ---------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~~~~~~  351 (377)
T TIGR00890       293 ---------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKAVAGIFGGLIA  351 (377)
T ss_pred             ---------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHHHHHHHHHHHH
Confidence                           112335566778888888888888899999999998      99999999999999999999999


Q ss_pred             HHhcccccchhhHHHHHHHHHHHH
Q 008450          192 VYIQDEISRSVGYGICSVAMFMAI  215 (565)
Q Consensus       192 g~l~~~~gw~~~f~i~~~~~~~~~  215 (565)
                      |++.+..||++.|.+.+++.++++
T Consensus       352 g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       352 SHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHhhhchhhHHHHHHHHHHHhc
Confidence            999999999999998877666543

>TIGR01272 gluP glucose/galactose transporter

Probab=99.29  E-value=4.2e-10  Score=115.62  Aligned_cols=83  Identities=16%  Similarity=-0.006  Sum_probs=70.9

Q ss_pred             hhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccc---------
Q 008450          127 FQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE---------  197 (565)
Q Consensus       127 ~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~---------  197 (565)
                      .++..++++.++.|.|.+...++.++++++..++++      +.+.+++.+....+|.++||.+++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            358889999999999999999999999999999888      88899999999999999999999977631         


Q ss_pred             -------ccchhhHHHHHHHHHHHH
Q 008450          198 -------ISRSVGYGICSVAMFMAI  215 (565)
Q Consensus       198 -------~gw~~~f~i~~~~~~~~~  215 (565)
                             .+|+++|++.+.+.++..
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~  106 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLA  106 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                   479999986655544333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.28  E-value=5.8e-11  Score=122.14  Aligned_cols=166  Identities=22%  Similarity=0.267  Sum_probs=146.6

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchh-HHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYK-TIAIFAAVQTLGTGMLAM  101 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-~~~~~~~~~~~~~~~~a~  101 (565)
                      ..++...........++.++.+.+|.+..+.+++.+...++..++.++.|+++||+ |||+ .+.++..+..++.++...
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~  261 (352)
T cd06174         183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGLLLLAL  261 (352)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHH
Confidence            34556666777778888888877899999999999999999999999999999999 9999 999999999988888877


Q ss_pred             HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHH
Q 008450          102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS  181 (565)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (565)
                      ..                        +...+.+..++.|++.+...+....++.|..|+++      |++.++......+
T Consensus       262 ~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  311 (352)
T cd06174         262 AP------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNTFGS  311 (352)
T ss_pred             hc------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHHHHH
Confidence            62                        26678889999999999999999999999999988      9999999999999


Q ss_pred             HHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Q 008450          182 LGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFL  219 (565)
Q Consensus       182 lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~  219 (565)
                      +|..+++.+.+++.+..+|+..|.+.+++.+++.+..+
T Consensus       312 ~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         312 LGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            99999999999999989999999998887776655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.27  E-value=1.1e-10  Score=123.99  Aligned_cols=158  Identities=16%  Similarity=0.059  Sum_probs=126.7

Q ss_pred             HHHHHHHHHhhhcCCCCc---hhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccC
Q 008450           33 GIAVNLVTYLVGTMHLPS---ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLR  109 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~---~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~  109 (565)
                      .+.+.++.|+.+..+...   ...+.+.+.+.++..++.++.|+++||+ |||+++..+..+..++.+...+..      
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~------  309 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFVQ------  309 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHhc------
Confidence            344556777765433222   1245566667788889999999999999 999999998887777766665542      


Q ss_pred             CCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHH
Q 008450          110 PRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVT  189 (565)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~  189 (565)
                                        +.+.+++.+++.|++.+...|...+++.+..|+++      +++.++++....++|..+||.
T Consensus       310 ------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~~gp~  365 (408)
T PRK09874        310 ------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGNVTGPL  365 (408)
T ss_pred             ------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHHHhhHH
Confidence                              25667888999999999999999999999888888      999999999999999999999


Q ss_pred             HHHHhcccccchhhHHHHHHHHHHHHHHHHhc
Q 008450          190 VLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       190 i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~  221 (565)
                      ++|++.+..||++.|++.+++.+++.+..+..
T Consensus       366 ~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        366 MGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888777766655443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.26  E-value=3.7e-10  Score=117.12  Aligned_cols=391  Identities=11%  Similarity=0.030  Sum_probs=221.3

Q ss_pred             HHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008450           35 AVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK  114 (565)
Q Consensus        35 ~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  114 (565)
                      .+...+|.++-+| +...+.|+..+|++.+.....++-|+.|++ |=|...+++.++..+|+.+=..+. .|.+.     
T Consensus        64 ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~-----  135 (480)
T KOG2563|consen   64 YAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVP-----  135 (480)
T ss_pred             ehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Ccccc-----
Confidence            3456777777888 777788999999999999999999999999 999999999999999988876662 24321     


Q ss_pred             CCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHh
Q 008450          115 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI  194 (565)
Q Consensus       115 ~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l  194 (565)
                                +..-....+.+..+.+...-.+.....-..+-||++++      |..+..+-.+++.+|.++|.++...+
T Consensus       136 ----------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppil  199 (480)
T KOG2563|consen  136 ----------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPIL  199 (480)
T ss_pred             ----------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhcccee
Confidence                      11112367788888887777776666677788999999      99999998888889999998887777


Q ss_pred             cccc------cchh--hHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCcc
Q 008450          195 QDEI------SRSV--GYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPE  266 (565)
Q Consensus       195 ~~~~------gw~~--~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (565)
                      ..+.      +|..  .|+...+...+.+.+..+..++.++.||..+...+                             
T Consensus       200 V~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~-----------------------------  250 (480)
T KOG2563|consen  200 VPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL-----------------------------  250 (480)
T ss_pred             cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh-----------------------------
Confidence            6543      3543  34433333333333333333322222332110000                             


Q ss_pred             ccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhcccc
Q 008450          267 ASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER  346 (565)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (565)
                       +      +.++....                     ....+++..+...........+++..+..+...+..  .+.+ 
T Consensus       251 -~------~~~f~~si---------------------~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~--sgY~-  299 (480)
T KOG2563|consen  251 -Q------DASFPKSI---------------------KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP--SGYE-  299 (480)
T ss_pred             -h------cCcHHHHH---------------------HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc--ccCC-
Confidence             0      00000000                     011122222222222212222222221111100000  0011 


Q ss_pred             cccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 008450          347 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGL  426 (565)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~  426 (565)
                           +...+....+..+..++...+.+.+.||    .++   .+.  .+.+-+....++...+......          
T Consensus       300 -----~~~aG~ig~l~iv~Gmlga~~~gii~Dk----tk~---fk~--~~~v~~~~~~v~~~~l~~~t~~----------  355 (480)
T KOG2563|consen  300 -----GVFAGYIGALMIVAGMLGALASGIIADK----TKK---FKL--TTLVLYLFALVGTLMLLTCTLF----------  355 (480)
T ss_pred             -----ccccchhHHHHHHHHHHHHHHHHhhhhh----hhh---HHH--HHHHHHHHHHHHHHHHHHhhcc----------
Confidence                 1234555666666666666666666553    221   112  2223333333332221111110          


Q ss_pred             CCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCc
Q 008450          427 TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGW  506 (565)
Q Consensus       427 ~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w  506 (565)
                           .-..+++.....+.|..+....|...++..|..-+...++.+|+.++..++-+.+-..+.+...+   +.+..+|
T Consensus       356 -----~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~---~~~~~~~  427 (480)
T KOG2563|consen  356 -----LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE---DLGPPGN  427 (480)
T ss_pred             -----CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh---ccCCCCC
Confidence                 23344555666777788888889999999999988899999999998777666555555444432   1111222


Q ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccch
Q 008450          507 LADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGI  550 (565)
Q Consensus       507 ~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~~~~~~  550 (565)
                      .         ...-+.+...+++.+.+..+..+++++.+.+++.
T Consensus       428 ~---------~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~~~  462 (480)
T KOG2563|consen  428 T---------FPANIFLTVSALLGAILVAFFRPDYRRLRAEAGN  462 (480)
T ss_pred             C---------ccchhHhHHHHHHHHHHHhhhhhhHHhHhhhhcc
Confidence            1         1112444555555555666666666655554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.24  E-value=1.2e-10  Score=121.81  Aligned_cols=157  Identities=17%  Similarity=0.151  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      ......++.|+.+++|.++.+.+++.+.......++.+++|+++||+ |||+++.++.+...+...+....+        
T Consensus       216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~--------  286 (375)
T TIGR00899       216 ILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN--------  286 (375)
T ss_pred             HHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH--------
Confidence            33445678888889999999999988888777888899999999999 999998887766555444443331        


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                      +.+.+.+.+++.|++.|...+....+..|..|+ +      +++++++++...++|..++|.++
T Consensus       287 ----------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~g~~~~  343 (375)
T TIGR00899       287 ----------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGWIIAGSVG  343 (375)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHH
Confidence                            255677788888998888888888888898875 3      66899999999999999999999


Q ss_pred             HHhcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          192 VYIQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       192 g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      |++.+..||+..|++.+++.+++.++...
T Consensus       344 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       344 GILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            99999999999999888777766655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.24  E-value=2.4e-10  Score=120.96  Aligned_cols=165  Identities=8%  Similarity=-0.058  Sum_probs=129.2

Q ss_pred             HHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHH-HHHhh
Q 008450           26 CERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGML-AMVTK  104 (565)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~-a~~~~  104 (565)
                      +.....++...++++|+.+.+|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+ .+..+..++..+. ...  
T Consensus       216 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~~l~~~~--  291 (390)
T PRK03545        216 VVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLLLLLPAA--  291 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHHHHHHHh--
Confidence            33344555666778888888999999999999999999999999999999998 887654 4444444443333 222  


Q ss_pred             hcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHH
Q 008450          105 LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGT  184 (565)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~  184 (565)
                       +                     +.+.+.+..++.|++.+...+.....+.+..| ++      |+++++++....++|.
T Consensus       292 -~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~  342 (390)
T PRK03545        292 -N---------------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGIFNIGI  342 (390)
T ss_pred             -c---------------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHHHHHHH
Confidence             1                     25667778888899988887888888888766 45      8899999999999999


Q ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccc
Q 008450          185 LMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       185 ~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      .+||.++|++.++.|++..|++.+++.+++++......+
T Consensus       343 ~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        343 GAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999988887777666555443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.23  E-value=1.2e-10  Score=123.01  Aligned_cols=154  Identities=14%  Similarity=0.219  Sum_probs=123.4

Q ss_pred             HHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           33 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      ....+++.|++ +.|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+..+..++.++.. .          
T Consensus       218 ~~~~~lp~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~----------  284 (381)
T PRK03633        218 SLYGLMPLYLN-HQGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S----------  284 (381)
T ss_pred             HHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h----------
Confidence            34456777876 4699999999999999999999999999999999 999999888887777655442 1          


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                                      .......+++.|++.+...|...+...|..|+++      ++...+.+....++|.++||.++|
T Consensus       285 ----------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~~~G  342 (381)
T PRK03633        285 ----------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPSFTA  342 (381)
T ss_pred             ----------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            1123346677787777788999999999888876      777777777888999999999999


Q ss_pred             HhcccccchhhHHHHHHHHHHHHHHHHhc
Q 008450          193 YIQDEISRSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       193 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~  221 (565)
                      ++.++++|++.|.+.+.+.+++.+..+..
T Consensus       343 ~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        343 MLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999998877766665554444

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.23  E-value=1.6e-10  Score=123.65  Aligned_cols=154  Identities=15%  Similarity=0.093  Sum_probs=126.4

Q ss_pred             HHHHHHhhhc---CCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           36 VNLVTYLVGT---MHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        36 ~~l~~yl~~~---l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      ..++.|+.+.   .+.+..+.+.+.+...++..++.+++|+++||+ |||+.+.++.++..++..+.+++++        
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~~--------  314 (420)
T PRK09528        244 QQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFATG--------  314 (420)
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhccc--------
Confidence            3466666543   356667889999999999999999999999999 9999999998888888888776622        


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeeh-hhHHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR-FFFFISLGTLMAVTVL  191 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~lg~~i~  191 (565)
                                      ++.+.+.+++.|++.+...+....++.|.+|++.      ++...+. ++...++|.++++.+.
T Consensus       315 ----------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~  372 (420)
T PRK09528        315 ----------------PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLA  372 (420)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHH
Confidence                            5667788999999988888888899999999887      8888766 6677889999999999


Q ss_pred             HHhcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          192 VYIQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       192 g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      |++.+..||+..|.+.+++.++..++.++
T Consensus       373 G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        373 GNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999877766555444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.22  E-value=2e-10  Score=120.39  Aligned_cols=162  Identities=15%  Similarity=0.100  Sum_probs=125.4

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHH-HHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG-MLAM  101 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~-~~a~  101 (565)
                      ..++....++.+..+++.|+++++|.+..+.+.+.....++..++.+++|+++||+ |||+.+..+..+..+... +...
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~  305 (394)
T TIGR00883       227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALLAVPLLMA  305 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666778899999888999999999999999999999999999999999 999988765554444332 2211


Q ss_pred             HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhh-HHH
Q 008450          102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF-FFI  180 (565)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~  180 (565)
                      ...  .                   .+.+.+.+..++.|++.+...+...+++.|.+|+++      |+++.+..+ ...
T Consensus       306 ~~~--~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~  358 (394)
T TIGR00883       306 LLD--S-------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYNLAG  358 (394)
T ss_pred             Hhc--C-------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhHhHH
Confidence            100  0                   125566777888899988899999999999999998      999999854 455


Q ss_pred             HHHHHHHHHHHHHhccccc-chhhHHHHHHHHH
Q 008450          181 SLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMF  212 (565)
Q Consensus       181 ~lg~~lg~~i~g~l~~~~g-w~~~f~i~~~~~~  212 (565)
                      .+|..++|.++|++.+..| |++.++...++.+
T Consensus       359 ~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       359 AIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            6899999999999999888 8877776554433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03699 putative transporter; Provisional

Probab=99.22  E-value=9.7e-11  Score=124.26  Aligned_cols=162  Identities=10%  Similarity=0.134  Sum_probs=127.9

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVT  103 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~  103 (565)
                      .++.....+++..+++.|+++.+|++..+.+++.+.+.++..++.+++|+++||+ +||+++.....+..+...+....+
T Consensus       214 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~~~~  292 (394)
T PRK03699        214 ALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVLMYLFVNTD  292 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHcC
Confidence            3444456677788999999989999999999999999999999999999999999 999998877766665544444331


Q ss_pred             hhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHH
Q 008450          104 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLG  183 (565)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg  183 (565)
                                              +...+.+..++.|++.++..+...++..+..|++       +++..+......++|
T Consensus       293 ------------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~g  341 (394)
T PRK03699        293 ------------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFILTCGTIG  341 (394)
T ss_pred             ------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHHHhhhHH
Confidence                                    1344556677888888888888888888876644       445567777788899


Q ss_pred             HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Q 008450          184 TLMAVTVLVYIQDEISRSVGYGICSVAMFMAIII  217 (565)
Q Consensus       184 ~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~  217 (565)
                      ..++|.+.|++.+..||+..+++.+++.++++++
T Consensus       342 ~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        342 TMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            9999999999999999999998877666655443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.22  E-value=2.1e-10  Score=125.22  Aligned_cols=149  Identities=19%  Similarity=0.154  Sum_probs=117.2

Q ss_pred             HHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           33 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      ....+++.|+++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++.....+        
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~--------  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG--------  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence            3557789999889999999999999999999999999999999999 9999988877666655544333211        


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                                    ...+.+.+..++.+....+..+..++++.|.+|+++      |++++++++...++|..+||.++|
T Consensus       364 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g  423 (496)
T PRK03893        364 --------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGA  423 (496)
T ss_pred             --------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHH
Confidence                          123334444444443333445677889999999888      999999999999999999999999


Q ss_pred             HhcccccchhhHHHHHHH
Q 008450          193 YIQDEISRSVGYGICSVA  210 (565)
Q Consensus       193 ~l~~~~gw~~~f~i~~~~  210 (565)
                      ++.+.+||+..+.+.+..
T Consensus       424 ~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        424 LIAQRLDLGTALASLSFS  441 (496)
T ss_pred             HHhccCChHHHHHHHHHH
Confidence            999999999888655433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.20  E-value=3.1e-10  Score=120.49  Aligned_cols=167  Identities=13%  Similarity=-0.009  Sum_probs=131.5

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVT  103 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~  103 (565)
                      .++....++++..++++|+.+ +|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+.++..+..++.++.... 
T Consensus       214 ~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~~~~~~~-  290 (393)
T PRK09705        214 FGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGFCGFIWL-  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHc-
Confidence            334556777888889999975 899999999999999999999999999999998 99999999887777776655433 


Q ss_pred             hhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCC-CChHhhhhhcceeehhhHHHHH
Q 008450          104 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                        |.                    +...+  ..++.|++.+...|.......+.+++ ++      +++.+++.+...++
T Consensus       291 --~~--------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~  340 (393)
T PRK09705        291 --PL--------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVAFMQGIGFI  340 (393)
T ss_pred             --cc--------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHHHHHHHHHH
Confidence              11                    11112  22456888888888887777888764 44      89999999999999


Q ss_pred             HHHHHHHHHHHhccccc-chhhHHHHHHHHHHHHHHHHhccc
Q 008450          183 GTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      +..+||.+.|++.+..| |...|.+.+++.++++.+.....+
T Consensus       341 ~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        341 IAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999876 888888877776666655555444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.20  E-value=3e-10  Score=120.66  Aligned_cols=160  Identities=15%  Similarity=0.034  Sum_probs=125.3

Q ss_pred             HHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008450           29 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQL  108 (565)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~  108 (565)
                      ..++....+++.|+. +.|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+..+.+...++.++.....     
T Consensus       234 ~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~-----  306 (406)
T PRK11551        234 IVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAAAP-----  306 (406)
T ss_pred             HHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence            345555666777776 5799999999999999999999999999999999 999998887666666655554431     


Q ss_pred             CCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHH
Q 008450          109 RPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV  188 (565)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~  188 (565)
                                         +.+.+.+..++.|++.++..+...++..|.+|+++      |++..++.+....+|..+||
T Consensus       307 -------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~  361 (406)
T PRK11551        307 -------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGSMAGP  361 (406)
T ss_pred             -------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHHHHHh
Confidence                               14456666777888888888889999999999998      99999999999999999999


Q ss_pred             HHHHHhcccc-cchhhHHHHHHHHHHHHHHHHh
Q 008450          189 TVLVYIQDEI-SRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       189 ~i~g~l~~~~-gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      .++|++.+.. +|...+++...+.+++.++.+.
T Consensus       362 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        362 LLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             hhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9999998865 4555666555555544444433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.20  E-value=2e-10  Score=130.06  Aligned_cols=133  Identities=11%  Similarity=0.048  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHH
Q 008450           57 VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIAL  136 (565)
Q Consensus        57 ~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r  136 (565)
                      .....++.+++.+++|+++||+ |||+++.+++++.++++++.+++.+                        ...+++.+
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~s------------------------~~~ll~~~  655 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGNS------------------------ESAMIALL  655 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHcc------------------------HHHHHHHH
Confidence            4455688899999999999999 9999999999999988888877632                        44567777


Q ss_pred             HHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Q 008450          137 YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAII  216 (565)
Q Consensus       137 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~  216 (565)
                      ++.+++.++..+...++++|++|.+.      |++++++.+....+|.++||++++++.. .+...+|++.+++.+++.+
T Consensus       656 ~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~-~~~~~pf~i~a~~lll~~l  728 (742)
T TIGR01299       656 CLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVG-ITKAAPILFASAALACGGL  728 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH
Confidence            88888888888999999999999998      9999999999999999999999998776 3566788777776666555


Q ss_pred             HHHhc
Q 008450          217 IFLAG  221 (565)
Q Consensus       217 ~~~~~  221 (565)
                      +.+++
T Consensus       729 l~~~L  733 (742)
T TIGR01299       729 LALKL  733 (742)
T ss_pred             HHHhC
Confidence            54443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09952 shikimate transporter; Provisional

Probab=99.20  E-value=4.4e-10  Score=121.14  Aligned_cols=171  Identities=16%  Similarity=0.083  Sum_probs=126.4

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVT  103 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~  103 (565)
                      .++..+.+|....+++.|+++.+|++..+...+.....+...++.++.|+++||+ ||||++..+.++..++.+.+....
T Consensus       259 ~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~  337 (438)
T PRK09952        259 RLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSAFPFFMAL  337 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667888888999999999999887766666666777888899999999999 999999888766555444333321


Q ss_pred             hhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHH-HHH
Q 008450          104 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF-ISL  182 (565)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~l  182 (565)
                      ...                    .....+.+..++.+++.+...+...+++.|.+|.+.      |+.+.++.+.. ..+
T Consensus       338 ~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~~~~~~l  391 (438)
T PRK09952        338 EAQ--------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGYQVASVV  391 (438)
T ss_pred             HcC--------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHHHHHHHH
Confidence            000                    123344455666788888888889999999999988      99888885544 458


Q ss_pred             HHHHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHHHHhc
Q 008450          183 GTLMAVTVLVYIQDEI--SRSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~--gw~~~f~i~~~~~~~~~~~~~~~  221 (565)
                      |+.++|.+.+++.+..  +|+..+.+.+++.+++.+..+..
T Consensus       392 gg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        392 GGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999997744  48888877766666665555443

>PRK12382 putative transporter; Provisional

Probab=99.19  E-value=2e-10  Score=121.56  Aligned_cols=158  Identities=14%  Similarity=0.141  Sum_probs=129.1

Q ss_pred             HHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008450           29 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQL  108 (565)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~  108 (565)
                      ..+..+..+.+.|+.+ .|++  +.+.....+.++..++.++.|++.||+ ||||.+..+..+..++.++..+..     
T Consensus       230 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-----  300 (392)
T PRK12382        230 VGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP-----  300 (392)
T ss_pred             HHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc-----
Confidence            4444555666777754 4654  345666777888899999999999999 999999999888888877766552     


Q ss_pred             CCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHH
Q 008450          109 RPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV  188 (565)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~  188 (565)
                                         +.+.+.++.++.|++.+...+.......|.+|+++      |++++++++...++|..+||
T Consensus       301 -------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~  355 (392)
T PRK12382        301 -------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSG  355 (392)
T ss_pred             -------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence                               25567778899999999888888889999998888      99999999999999999999


Q ss_pred             HHHHHhcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          189 TVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       189 ~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      .+.|++.+..||+..|.+.+++.+++.++.+.
T Consensus       356 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        356 PLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988777666655443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.19  E-value=2e-10  Score=122.68  Aligned_cols=158  Identities=9%  Similarity=0.022  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      .+....++.|+++.+|.+..+.+++.+.+.++..++.++.|++.||. ++++.+..+.++..++.++..+.   +     
T Consensus       240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~---~-----  310 (417)
T PRK10489        240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM---P-----  310 (417)
T ss_pred             HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc---c-----
Confidence            45556778888877999999999999999999999999999999997 88888888888777777666554   2     


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                      +.....++.++.|++.+...+...+++.|..|++.      |++++++++...++|..+|+.++
T Consensus       311 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~  368 (417)
T PRK10489        311 ----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALL  368 (417)
T ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHH
Confidence                            25566778888899888877888889999999888      99999999999999999999999


Q ss_pred             HHhcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          192 VYIQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       192 g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      |++.+..|++..+.+.++..++..++...
T Consensus       369 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        369 GGLGAMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            99999999988888776655544444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.17  E-value=3.5e-12  Score=139.84  Aligned_cols=190  Identities=17%  Similarity=0.240  Sum_probs=3.0

Q ss_pred             HHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008450           27 ERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLR  106 (565)
Q Consensus        27 ~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~  106 (565)
                      .+....|........+.+.++++++|.|++.+.+-++..+..++..|.++|. -|-|.+-.+.+++++|++++++    |
T Consensus        14 ~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l----P   88 (539)
T PF03137_consen   14 FQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL----P   88 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc----c
Confidence            3366677777778889999999999999999999999999999999999997 8889999999999999999976    3


Q ss_pred             ccCCCCCCCC-----------Ccccc-------------------cCCcchhHHHHHHHHHHHHHhccccccchhhhhhc
Q 008450          107 QLRPRPCKET-----------ATHTC-------------------EQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTD  156 (565)
Q Consensus       107 ~~~~~~~~~~-----------~~~~~-------------------~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~  156 (565)
                      .+..++|.-.           .+..|                   +......+..++++.++.|+|....++...+|+=|
T Consensus        89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD  168 (539)
T PF03137_consen   89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD  168 (539)
T ss_dssp             ---------------------------------------------------------------SSS--------------
T ss_pred             HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence            3333333100           01111                   11112246788999999999999999999999999


Q ss_pred             cCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccc---------------------c-cchhhHHHHHHHHHHH
Q 008450          157 QFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE---------------------I-SRSVGYGICSVAMFMA  214 (565)
Q Consensus       157 ~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~---------------------~-gw~~~f~i~~~~~~~~  214 (565)
                      ..++++      -+-.+++.+.+..+|.++|.++++++...                     . .|...|.+.+++.++.
T Consensus       169 nv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~  242 (539)
T PF03137_consen  169 NVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS  242 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            999888      88889999999999999999999866531                     1 3888888888776666


Q ss_pred             HHHHHhccccccc
Q 008450          215 IIIFLAGTKRYRY  227 (565)
Q Consensus       215 ~~~~~~~~~~~~~  227 (565)
                      .+.++..+++.+.
T Consensus       243 aipl~~FPk~lp~  255 (539)
T PF03137_consen  243 AIPLFFFPKKLPG  255 (539)
T ss_dssp             -------------
T ss_pred             HHHHHcCCccCCC
Confidence            5555655555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00897 2A0118 polyol permease family

Probab=99.16  E-value=7e-10  Score=118.08  Aligned_cols=169  Identities=14%  Similarity=0.120  Sum_probs=126.3

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHH-HHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIA-IFAAVQTLGTGMLAM  101 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-~~~~~~~~~~~~~a~  101 (565)
                      ..++....+++...+++.|++ ++|++..+.+++.+.+.+++.++.++.|+++||+ |||+.+. .+.+...++.+.+..
T Consensus       230 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~~~~l~~  307 (402)
T TIGR00897       230 VRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIFTLALYY  307 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHH
Confidence            344556677888888988875 5899999999999999999999999999999999 9888764 333333443333332


Q ss_pred             HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHH
Q 008450          102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS  181 (565)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (565)
                      ....                   ...+.+...+..++.|++.+...+. .....|..| ++      |++++++.+...+
T Consensus       308 ~~~~-------------------~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~~~g~~~~~~~  360 (402)
T TIGR00897       308 IPQH-------------------FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGAAMSVLNLSAG  360 (402)
T ss_pred             HHHc-------------------cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHHHHHHHHHHHH
Confidence            2110                   0013555667788888888776553 455666544 46      9999999999999


Q ss_pred             HHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          182 LGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       182 lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      +|..++|.++|++.+..||+.+|++.+++.+++.++..+
T Consensus       361 lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       361 LSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988777666555544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.16  E-value=3.5e-10  Score=119.53  Aligned_cols=161  Identities=6%  Similarity=-0.034  Sum_probs=137.7

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++..........+.++|++ ++|.+..+.+.+.+...++..+..+++|++.||+ |+|+++.++.+...+...+.+++
T Consensus       213 ~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~  290 (382)
T TIGR00902       213 AVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGRWAIIGAI  290 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHHHHHHHhH
Confidence            345556677778888999996 5899999999999999999999999999999999 99999999999999998888876


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhH-HHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF-FIS  181 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~  181 (565)
                      +                        +.+.+++...+.|++.|...+....++.+. |+++      |++..+++.. ...
T Consensus       291 ~------------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g  339 (382)
T TIGR00902       291 E------------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMG  339 (382)
T ss_pred             h------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHH
Confidence            3                        377788899999999999999999999987 8777      8888999864 567


Q ss_pred             HHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Q 008450          182 LGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIII  217 (565)
Q Consensus       182 lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~  217 (565)
                      +|.++|+.++|++.+.+|+ ..|.+.+++.++++++
T Consensus       340 ~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       340 GLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999999999999986 6677776666655544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.14  E-value=3.4e-10  Score=118.24  Aligned_cols=169  Identities=14%  Similarity=0.029  Sum_probs=122.7

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhH-HHHHHHHHHHHHH---H
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKT-IAIFAAVQTLGTG---M   98 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~-~~~~~~~~~~~~~---~   98 (565)
                      ..++....+.....+++.|+.+.+|.+..+.+++.+...++..++.+++|+++||+ |||+. +........++.+   +
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  301 (399)
T TIGR00893       223 GQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAIIAGLVLSL  301 (399)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHHHHHHHHH
Confidence            44555666777778899999999999999999999999999999999999999999 88861 1111111112211   1


Q ss_pred             HHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhH
Q 008450           99 LAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  178 (565)
Q Consensus        99 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (565)
                      ......  .                  ............+.+.+.+ ..+...++..|.+|+++      |++++++.+.
T Consensus       302 ~~~~~~--~------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~~~~  354 (399)
T TIGR00893       302 LMFATN--Y------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGLINS  354 (399)
T ss_pred             HHHHhc--c------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHHHHH
Confidence            111100  0                  0112333333333444444 78999999999999998      9999999999


Q ss_pred             HHHHHHHHHHHHHHHhccccc-chhhHHHHHHHHHHHHHHHH
Q 008450          179 FISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFL  219 (565)
Q Consensus       179 ~~~lg~~lg~~i~g~l~~~~g-w~~~f~i~~~~~~~~~~~~~  219 (565)
                      ..++|..++|.+.|++.+..| |+..|++.+++.+++.+..+
T Consensus       355 ~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       355 LGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888 99999888777666555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.12  E-value=6.1e-10  Score=118.42  Aligned_cols=162  Identities=12%  Similarity=0.120  Sum_probs=121.2

Q ss_pred             HHHHHHHHhhh-cCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccc-hhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           34 IAVNLVTYLVG-TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGR-YKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        34 ~~~~l~~yl~~-~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      .....-+|+++ |.+-+.+..|+++++..++..+..+..|+...|. |. |+.++.+.++.++|+++.....-.|+    
T Consensus        53 ~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pli~s~ii~~~g~llY~~l~~~~~----  127 (488)
T KOG2325|consen   53 YLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPLIVSFLIAIIGNLLYLALAYVPN----  127 (488)
T ss_pred             EEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCHHHHHHHHHHHHHHHHHHHhccc----
Confidence            33445677764 4677788899999999999999999999999998 64 77888899999999999844433343    


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                     ...++++++|++.|+|.|.. +..-+|++|....++      |.++++....+..+|.++||.++
T Consensus       128 ---------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d------R~rA~a~~~~~~vlg~ilGp~~q  185 (488)
T KOG2325|consen  128 ---------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED------RPRAFAATSGGFVLGIILGPTIQ  185 (488)
T ss_pred             ---------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc------hHHHHHHhhhHHHHHHHHhHHHH
Confidence                           25889999999999998876 566799999888888      89999888887777777777766


Q ss_pred             HHhcc----cc---------cchhhHHHHHHHHHHHHHHHHhcc
Q 008450          192 VYIQD----EI---------SRSVGYGICSVAMFMAIIIFLAGT  222 (565)
Q Consensus       192 g~l~~----~~---------gw~~~f~i~~~~~~~~~~~~~~~~  222 (565)
                      ..+..    .+         -|..+=|+.+++.++.+++..+..
T Consensus       186 ~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f  229 (488)
T KOG2325|consen  186 LAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFF  229 (488)
T ss_pred             HHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhe
Confidence            54432    10         133455666666665555544443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.12  E-value=8.4e-10  Score=118.77  Aligned_cols=164  Identities=16%  Similarity=0.118  Sum_probs=110.9

Q ss_pred             HHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcccc--chhHHHHHHHHHHHHHHHHHHHhhhc
Q 008450           29 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLG--RYKTIAIFAAVQTLGTGMLAMVTKLR  106 (565)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rr~~~~~~~~~~~~~~~~~a~~~~~~  106 (565)
                      ..++++..+++.|+.+++|++..+.+...+.+.++..++.+++|+++||+.+  |++......+...+........   +
T Consensus       257 ~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~---~  333 (434)
T PRK11663        257 VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM---P  333 (434)
T ss_pred             HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc---c
Confidence            3444566678899988899999999999999999999999999999999822  2332222211111111111111   1


Q ss_pred             ccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHH
Q 008450          107 QLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLM  186 (565)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l  186 (565)
                      .                   .+.....+..+..|++.............|.+|+++      |++..++.+...++|.++
T Consensus       334 ~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~  388 (434)
T PRK11663        334 F-------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVGLFAYLGAAL  388 (434)
T ss_pred             c-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHHHHHHHHHHH
Confidence            1                   012223333333443322222233456678888887      999999999999999999


Q ss_pred             HHHHHHHhcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          187 AVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       187 g~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      +|.+.|++.+.+||+..|++.+++.+++.+..+.
T Consensus       389 ~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        389 SGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             hcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887776655444443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.11  E-value=6.7e-10  Score=120.15  Aligned_cols=165  Identities=18%  Similarity=0.115  Sum_probs=114.0

Q ss_pred             HHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccc-cchhHH-HHHHHHHHHHHHHHHHHhh
Q 008450           27 ERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFL-GRYKTI-AIFAAVQTLGTGMLAMVTK  104 (565)
Q Consensus        27 ~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~-~~~~~~~~~~~~~~a~~~~  104 (565)
                      ....+++...++|.|++++.|++..+.+++...+.++..++.+++|+++||+. |||+.. .....+..++.++..+.  
T Consensus       265 ~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~--  342 (452)
T PRK11273        265 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN--  342 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh--
Confidence            33455677788999999889999999999999999999999999999999972 333322 22223333333322221  


Q ss_pred             hcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHH
Q 008450          105 LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGT  184 (565)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~  184 (565)
                       +.                   .+.....++.++.|.+..........+..|.+|++.      |++++++.+...++|.
T Consensus       343 -~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~  396 (452)
T PRK11273        343 -PA-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGG  396 (452)
T ss_pred             -cc-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHHHHHHHHHH
Confidence             10                   123334445555555433322333456779999988      9999999998888886


Q ss_pred             H-HHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Q 008450          185 L-MAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFL  219 (565)
Q Consensus       185 ~-lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~  219 (565)
                      . +||.++|++.+..||+..|++.++.++++.+...
T Consensus       397 ~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        397 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            5 4799999999999999999987776665544443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.11  E-value=1.3e-09  Score=119.16  Aligned_cols=171  Identities=12%  Similarity=0.114  Sum_probs=127.8

Q ss_pred             HHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHH-HHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 008450           26 CERLSTMGIAVNLVTYLVGTMHLPSATSANIVT-DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTK  104 (565)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~  104 (565)
                      +.....+....+.++|+.+++|++..+.+++.. ...++..++.+++|+++||+ |||+.+.++.++.+++.++......
T Consensus       233 l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l~~  311 (491)
T PRK11010        233 LYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLLSI  311 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444555667888888889999999999985 44679999999999999999 9999888776665655443322110


Q ss_pred             hcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHH
Q 008450          105 LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGT  184 (565)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~  184 (565)
                      .+                    .+...+.+..++..++.|...++..++..+..+++.      +++.+++.+...++|.
T Consensus       312 ~~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~lg~  365 (491)
T PRK11010        312 TD--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSAVGR  365 (491)
T ss_pred             cc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHHHH
Confidence            00                    123344555566555556566777888899999888      7888999999999999


Q ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccc
Q 008450          185 LMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       185 ~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      .+++.+.|++.+..||+..|.+.+++.+.++++....++
T Consensus       366 ~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        366 VYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888889999999999999999888887777666665543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.11  E-value=6.2e-10  Score=117.46  Aligned_cols=146  Identities=19%  Similarity=0.127  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      .+....++.|+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..+........   +     
T Consensus       255 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~---~-----  325 (405)
T TIGR00891       255 HPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAI---G-----  325 (405)
T ss_pred             hhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHh---C-----
Confidence            34455678899888999999999999999999999999999999999 99999888776553322221111   0     


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                     .+...+.++.++.++..++..+..++++.|.+|+++      |++++++.+...++|..++|.+.
T Consensus       326 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~g~~~~  384 (405)
T TIGR00891       326 ---------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLGGALAPIIG  384 (405)
T ss_pred             ---------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHHHHHHHHHH
Confidence                           124556666677777777777888899999999998      99999999999999999999999


Q ss_pred             HHhccccc-chhhHHHH
Q 008450          192 VYIQDEIS-RSVGYGIC  207 (565)
Q Consensus       192 g~l~~~~g-w~~~f~i~  207 (565)
                      |++.+..| |+..+...
T Consensus       385 g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       385 ALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHHHhccccchhHHhh
Confidence            99999988 87766543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.11  E-value=1.1e-09  Score=113.83  Aligned_cols=169  Identities=12%  Similarity=0.109  Sum_probs=139.1

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      +.++...+.|...+++.+++++..|++....+++...|.++..++..++|+++||  +.|+++.....++++..+.+.+.
T Consensus       219 ~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~  296 (394)
T COG2814         219 ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFT  296 (394)
T ss_pred             HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHh
Confidence            6777778899999999999999999999999999999999999999999999999  68888888888888777776665


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      .+                       +.+...+..++.|+..+........-+++.. +++      ++.+.+++....|+
T Consensus       297 ~~-----------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~------~~~a~sl~~aa~nl  346 (394)
T COG2814         297 GA-----------------------SPALALALLFLWGFAFSPALQGLQTRLARLA-PDA------ADLAGSLNVAAFNL  346 (394)
T ss_pred             cc-----------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCc------hHHHHHHHHHHHHH
Confidence            22                       2455666666677776665555555555522 444      78899999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      |..+|..+||.+.+++|+....+..+++.+.++++.+...+
T Consensus       347 gia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         347 GIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999888888777666544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.10  E-value=1.1e-09  Score=117.79  Aligned_cols=167  Identities=13%  Similarity=0.009  Sum_probs=121.1

Q ss_pred             HHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008450           37 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  116 (565)
Q Consensus        37 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (565)
                      +..+++.+++|++..+.++......++..++.+++|+++||+ |||+.+.+++++..++.++.++......         
T Consensus       305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  374 (481)
T TIGR00879       305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV---------  374 (481)
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc---------
Confidence            344555567899998889999999999999999999999999 9999999998888887777764311000         


Q ss_pred             CcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcc
Q 008450          117 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  196 (565)
Q Consensus       117 ~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~  196 (565)
                       ++   +........+....+..+....+..+....+..|.+|+++      |+++.++.+...++|.++++.+.+++.+
T Consensus       375 -~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~  444 (481)
T TIGR00879       375 -TG---SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLE  444 (481)
T ss_pred             -CC---cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00   0000012222222222222222334677778899999988      9999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHhccc
Q 008450          197 EISRSVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       197 ~~gw~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      ..+|++.|++.+++++++.++.++..+
T Consensus       445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       445 SIGVGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             hcCccceehhHHHHHHHHHHHHheecc
Confidence            899999999888777766666555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.10  E-value=1.3e-08  Score=109.42  Aligned_cols=367  Identities=12%  Similarity=0.049  Sum_probs=210.6

Q ss_pred             CCCCCCchhhHHHHHHHhHHHH---HHHHHHhhhcCCCCch-hhhhHHHHH----HHHHHHHHhhhHHHhhccccchhHH
Q 008450           14 SPADPSKTGIELCERLSTMGIA---VNLVTYLVGTMHLPSA-TSANIVTDF----MGTSFLLCLLGGFLADTFLGRYKTI   85 (565)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~---~~l~~yl~~~l~~s~~-~~~~~~~~~----~~~~~~~~~~~G~laDr~~Grr~~~   85 (565)
                      .+....-++..+.+.+++....   .+...+.....+.... ..+......    .+...+..+..|.++||+ |||..+
T Consensus        17 ~~~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L   95 (463)
T KOG2816|consen   17 LASMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVL   95 (463)
T ss_pred             cchhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhH
Confidence            3344444557777777655544   4555555554443322 233333333    578889999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHH--HhccccccchhhhhhccCCCCCh
Q 008450           86 AIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIA--LGTGGLKSSVSGFGTDQFDEKDE  163 (565)
Q Consensus        86 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g--~g~g~~~~~~~~~~~~~~~~~~~  163 (565)
                      .+.+....+......+.                          .+.+++   +.+  -+.+...+...++++|...+++ 
T Consensus        96 ~~~~~~~~l~~~~~~~~--------------------------~~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~-  145 (463)
T KOG2816|consen   96 LLPLFGTILPALCLLFQ--------------------------GYWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE-  145 (463)
T ss_pred             HHHHHHHHHhHHHHHHH--------------------------HHHHhh---hcccccchhhhhhhhhhheeeccchhH-
Confidence            99888887777777665                          222322   333  3445567888899999998888 


Q ss_pred             HhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCC-CchHHHHHHH
Q 008450          164 KEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSG-SPIVHIFQVI  242 (565)
Q Consensus       164 ~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  242 (565)
                           |.+.+++.......+..++|.+++++....|...+|.+..+..+++.+......|+-..++.+. ++..      
T Consensus       146 -----R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~------  214 (463)
T KOG2816|consen  146 -----RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR------  214 (463)
T ss_pred             -----HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc------
Confidence                 9999999999999999999999999999999999999998887777666555554432221111 0000      


Q ss_pred             HHHHHhccccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHH
Q 008450          243 VAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWAT  322 (565)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (565)
                              ..   .+...          .+.+..+....             .++        ...+++.+...+..+..
T Consensus       215 --------~~---~~~~~----------~~~~~~~~~~~-------------~~~--------~~~~r~~l~l~l~~~~~  252 (463)
T KOG2816|consen  215 --------EL---TPGSL----------DSSHVADAFQS-------------LTK--------VGPDRLLLLLLLVAFLS  252 (463)
T ss_pred             --------cc---CCCcc----------cchhhhhhhhh-------------hcc--------cCCCccchHHHHHHHHH
Confidence                    00   00000          00000000000             000        00111122111111111


Q ss_pred             HHHHHhhhcccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHH
Q 008450          323 TIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVL  402 (565)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l  402 (565)
                      ...-.....-....+.......+..      ..+.+.....+...+...+.    .++..+..     ...+.+.+|+..
T Consensus       253 ~~~~~~~~~~~~~~yl~~~f~w~~~------~~s~~~~~~~~~~~i~~l~~----~~~l~~~l-----~~~~~i~lGl~~  317 (463)
T KOG2816|consen  253 SLPEAGGASDVLLLYLKAKFGWNKK------EFSDLLSLVSILGIISQLLL----LPLLSSIL-----GEKRLISLGLLS  317 (463)
T ss_pred             HHHHhcCceeEEEEEEeeecCcCHH------HHHHHHHHHHHHHHHHHHHH----HHHHHHHH-----hhhhHhhHHHHH
Confidence            1111111010001111111111111      11112222222222222221    11122211     111257889999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHH
Q 008450          403 SIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSL  482 (565)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~l  482 (565)
                      -.+...+.++.+                   .. |.+....+.........|...+++...+.++.+|+..++...+..+
T Consensus       318 ~~~~~~~~af~~-------------------~~-w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l  377 (463)
T KOG2816|consen  318 EFLQLLLFAFAT-------------------ET-WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGL  377 (463)
T ss_pred             HHHHHHHHHHhc-------------------cc-hhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHH
Confidence            999999988753                   22 3333444444455577899999999999999999999999999999


Q ss_pred             HHHHhhHHhhhhhhccc
Q 008450          483 GFFVSSFLVAVVKKVTG  499 (565)
Q Consensus       483 g~~ig~~l~~~l~~~~~  499 (565)
                      ...+++.+.+.+...+.
T Consensus       378 ~~~~~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  378 SGVVSPALYGNIFALTL  394 (463)
T ss_pred             hhhhhHHHHHHHHHHHH
Confidence            99999999998876554

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.10  E-value=1.3e-08  Score=112.64  Aligned_cols=193  Identities=14%  Similarity=0.272  Sum_probs=151.6

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ...+.+....+........+.+.++++.++.|++.+.+-++..+...+..|.+-|. -|-|.+-+|++++++|++++++-
T Consensus       104 ~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~alP  182 (735)
T KOG3626|consen  104 LAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFALP  182 (735)
T ss_pred             HHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhCh
Confidence            45555556668888889999999999999999999999999999999999999998 88899999999999999999764


Q ss_pred             hhhcccCCCC------------------------------CCCCCcccc-c-CCcchhHHHHHHHHHHHHHhccccccch
Q 008450          103 TKLRQLRPRP------------------------------CKETATHTC-E-QASGFQMGVLYIALYLIALGTGGLKSSV  150 (565)
Q Consensus       103 ~~~~~~~~~~------------------------------~~~~~~~~~-~-~~~~~~~~~l~i~r~l~g~g~g~~~~~~  150 (565)
                          ....++                              |...++... + +.+..-+.+++++.++.|+|....++..
T Consensus       183 ----Hf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlG  258 (735)
T KOG3626|consen  183 ----HFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLG  258 (735)
T ss_pred             ----HHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCC
Confidence                222222                              222222222 1 1222245578999999999999999999


Q ss_pred             hhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccc------------------c-cchhhHHHHHHHH
Q 008450          151 SGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE------------------I-SRSVGYGICSVAM  211 (565)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~------------------~-gw~~~f~i~~~~~  211 (565)
                      .+|+=|-..+++      -...+++.+.+..+|.++|.++++++...                  . .|+..|++.+.+.
T Consensus       259 isYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~  332 (735)
T KOG3626|consen  259 ISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALL  332 (735)
T ss_pred             CccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHH
Confidence            999999888877      78888999999999999999999876531                  1 3888898888887


Q ss_pred             HHHHHHHHhcccccc
Q 008450          212 FMAIIIFLAGTKRYR  226 (565)
Q Consensus       212 ~~~~~~~~~~~~~~~  226 (565)
                      ++..+.+++.++..+
T Consensus       333 ~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  333 LFSAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHHHhCcccCc
Confidence            777777777665543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.09  E-value=4.9e-10  Score=121.39  Aligned_cols=160  Identities=11%  Similarity=0.008  Sum_probs=125.5

Q ss_pred             HHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcc-ccchhHHHHH--HHHHHHHHHHHHHHhh
Q 008450           28 RLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF-LGRYKTIAIF--AAVQTLGTGMLAMVTK  104 (565)
Q Consensus        28 ~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grr~~~~~~--~~~~~~~~~~~a~~~~  104 (565)
                      .+.++....++++|+. ++|++..+.+++.+...++..++.+++|+++||. .++|+...++  .+...++.+++.... 
T Consensus       254 ~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~-  331 (455)
T TIGR00892       254 FLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG-  331 (455)
T ss_pred             HHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            3445556677888876 5799999999999999999999999999999984 1344433333  233333334443331 


Q ss_pred             hcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHH
Q 008450          105 LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGT  184 (565)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~  184 (565)
                                             +.+.+++.+++.|++.++..+...+++.|.+|+++      +++.++++....++|.
T Consensus       332 -----------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~lg~  382 (455)
T TIGR00892       332 -----------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTIVECCAV  382 (455)
T ss_pred             -----------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHHHHHHHH
Confidence                                   26678889999999999999999999999999888      9999999999999999


Q ss_pred             HHHHHHHHHhcccc-cchhhHHHHHHHHHHHHHHH
Q 008450          185 LMAVTVLVYIQDEI-SRSVGYGICSVAMFMAIIIF  218 (565)
Q Consensus       185 ~lg~~i~g~l~~~~-gw~~~f~i~~~~~~~~~~~~  218 (565)
                      ++||.++|++.+.. +|++.|++.+++.+++.+..
T Consensus       383 ~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~  417 (455)
T TIGR00892       383 LIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL  417 (455)
T ss_pred             HccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence            99999999999877 59999999887766554443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.08  E-value=3.2e-09  Score=114.25  Aligned_cols=147  Identities=15%  Similarity=0.134  Sum_probs=107.4

Q ss_pred             HHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHH-HHHHHhhh
Q 008450           27 ERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG-MLAMVTKL  105 (565)
Q Consensus        27 ~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~-~~a~~~~~  105 (565)
                      ....++++..+++.|+++.+|++..+.+++...+.++..++.+++|+++||+ |||+++..+.++..+... ....... 
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~-  327 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALSWLVA-  327 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHc-
Confidence            3445667778899999988999999999988889999999999999999999 999988776544332221 1111101 


Q ss_pred             cccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHH-HHH
Q 008450          106 RQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS-LGT  184 (565)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-lg~  184 (565)
                       .                   .....+.+..++.+++.+...+....++.|.+|++.      |+..+++.+...+ ++.
T Consensus       328 -~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~g  381 (434)
T PRK15075        328 -A-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIFG  381 (434)
T ss_pred             -C-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHHh
Confidence             0                   012233344455566667777777789999999999      9999998655444 457


Q ss_pred             HHHHHHHHHhcccccch
Q 008450          185 LMAVTVLVYIQDEISRS  201 (565)
Q Consensus       185 ~lg~~i~g~l~~~~gw~  201 (565)
                      .++|.+.|++.+..|++
T Consensus       382 ~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        382 GFTPAISTWLIHVTGDK  398 (434)
T ss_pred             hhHHHHHHHHHHhcCCc
Confidence            78999999999988864

>PRK10504 putative transporter; Provisional

Probab=99.06  E-value=1.6e-09  Score=117.56  Aligned_cols=150  Identities=11%  Similarity=0.036  Sum_probs=120.1

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++...++.......+.|++..+|.++.+.+++.....++..++.++.|+++||+ |||+++..+..+..++..+..+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  347 (471)
T PRK10504        269 GSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVSLLFMLV  347 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHhc
Confidence            34555555544455667777777899999999999999999999999999999999 99999999888888776666553


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      ..                     ......+.+..++.|++.+...+..+.+..+.+|+++      ++.++++.+....+
T Consensus       348 ~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~  400 (471)
T PRK10504        348 AL---------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSMIMQL  400 (471)
T ss_pred             cc---------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHHHHHH
Confidence            11                     0123344556677888888888889999999999888      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccc
Q 008450          183 GTLMAVTVLVYIQDEISR  200 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw  200 (565)
                      |..+|+.++|.+.+..++
T Consensus       401 g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        401 SMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999988776655

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.06  E-value=1.5e-08  Score=108.91  Aligned_cols=162  Identities=16%  Similarity=0.158  Sum_probs=116.3

Q ss_pred             HHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcc--cc-chhH-HHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           37 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF--LG-RYKT-IAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        37 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G-rr~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      ...+|+.+++|++++|...+.+...+.- ..-++.|.++|.+  +| |||- ++++.++..++...++..+...      
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~------   83 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE------   83 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc------
Confidence            3457888999999999887666555444 4467789999986  33 4444 4445555544455554432101      


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                                    .......+..++..+|........-++..|...++.+.    ++...++.+....+|.+++..++|
T Consensus        84 --------------~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G  145 (433)
T PF03092_consen   84 --------------SSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSG  145 (433)
T ss_pred             --------------chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhh
Confidence                          12445566777788999999999999999998766532    788899999999999999999999


Q ss_pred             HhcccccchhhHHHHHHHHHHHHHHHHhccc
Q 008450          193 YIQDEISRSVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       193 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      .+.+..+++..|.+.+++..+..+..++..+
T Consensus       146 ~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  146 PLLDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             hhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            9999999999999887776655444444333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.05  E-value=2.2e-09  Score=115.58  Aligned_cols=170  Identities=17%  Similarity=0.048  Sum_probs=115.7

Q ss_pred             HHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHH---HHHHHH
Q 008450           25 LCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG---TGMLAM  101 (565)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~---~~~~a~  101 (565)
                      ++.....+++..+++.|+++..|+++.+.++....+.++..++.+++|+++||+ |+++....+.....+.   .++...
T Consensus       261 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~  339 (438)
T TIGR00712       261 VFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVTIAVIVYWM  339 (438)
T ss_pred             HHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHHHHHHh
Confidence            344455577888899999988999999999999999999999999999999998 6544333333222211   111111


Q ss_pred             HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHH
Q 008450          102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS  181 (565)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (565)
                      .   +.                   .+.....+..++.|.+..+..........|.+|+++      |+++.++.+...+
T Consensus       340 ~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~  391 (438)
T TIGR00712       340 N---PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGY  391 (438)
T ss_pred             c---CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhhchHHH
Confidence            1   10                   012333344444554433322222345778899888      9999999998888


Q ss_pred             HH-HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccc
Q 008450          182 LG-TLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       182 lg-~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      +| .++||.+.|++.+..||...|++..+..+++.+..++..+
T Consensus       392 ~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
T TIGR00712       392 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  434 (438)
T ss_pred             hhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            76 5789999999999999999998877666655555554433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.01  E-value=3.9e-09  Score=111.71  Aligned_cols=168  Identities=15%  Similarity=0.071  Sum_probs=124.3

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHH-HHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMG-TSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAM  101 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~  101 (565)
                      ..++...+......+.++|+.+ .|+++.+.+++...... ...++.+++|++.||+ |+|+++.++..+..+.......
T Consensus       216 ~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~  293 (390)
T TIGR02718       216 LALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLALLWFA  293 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHH
Confidence            3455656666677778888875 79999999999888764 6677789999999999 9999998877766443332222


Q ss_pred             HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCC-CChHhhhhhcceeehhhHHH
Q 008450          102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFFSRFFFFI  180 (565)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~  180 (565)
                      ... ..                 .......+.....+.+++.|...+...+...+..++ +.      +++.+++.+...
T Consensus       294 ~~~-~~-----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~  349 (390)
T TIGR02718       294 QAA-FW-----------------LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQSTR  349 (390)
T ss_pred             HHH-cc-----------------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHHH
Confidence            111 00                 001133344455566677787778888888887766 56      899999999999


Q ss_pred             HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Q 008450          181 SLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAII  216 (565)
Q Consensus       181 ~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~  216 (565)
                      ++|..+||.++|++.+..||+..|.+.+++.+++.+
T Consensus       350 ~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       350 DLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887766665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.01  E-value=1.3e-07  Score=96.70  Aligned_cols=154  Identities=18%  Similarity=0.162  Sum_probs=106.9

Q ss_pred             HHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCc
Q 008450           39 VTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT  118 (565)
Q Consensus        39 ~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  118 (565)
                      ...+-+++|++..|++.+..+-...+.+..++.|.++||+ |||+..++..++++++++.--.    +            
T Consensus        57 ~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~----~------------  119 (354)
T PF05631_consen   57 LYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS----S------------  119 (354)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc----c------------
Confidence            3334467899999999999999999999999999999999 9999999999999888765432    2            


Q ss_pred             ccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCC-hHhhhhhcceeehhh-HHHHHHHHHHHHHHHHhcc
Q 008450          119 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKD-EKEKTQMAYFFSRFF-FFISLGTLMAVTVLVYIQD  196 (565)
Q Consensus       119 ~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~-~~~~lg~~lg~~i~g~l~~  196 (565)
                               +++.++++|++.|++++....+..+.+.....+++ |++-  .+.-++... ..+.+-++++.+++-++.+
T Consensus       120 ---------~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~  188 (354)
T PF05631_consen  120 ---------NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW--LSDTFSLATFFGNGVVAIGAGVVANVLAD  188 (354)
T ss_pred             ---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence                     48889999999999999999888887654322211 1111  233232222 1122233444455556666


Q ss_pred             cccc--hhhHHHHHHHHHHHHHHHHh
Q 008450          197 EISR--SVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       197 ~~gw--~~~f~i~~~~~~~~~~~~~~  220 (565)
                      ..+.  ..+|....++.+++.++...
T Consensus       189 ~~~~g~vaPF~~a~~~l~~~~~~I~~  214 (354)
T PF05631_consen  189 WFGFGPVAPFDAAIVLLAVAAVLILK  214 (354)
T ss_pred             HhCCCCcchHHHHHHHHHHHHHHHHh
Confidence            5554  77888777666665555443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.01  E-value=2.2e-09  Score=110.81  Aligned_cols=163  Identities=21%  Similarity=0.211  Sum_probs=127.4

Q ss_pred             HhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccc-cchhHHHH-HHHHHHHHHHHHHHHhhhcc
Q 008450           30 STMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFL-GRYKTIAI-FAAVQTLGTGMLAMVTKLRQ  107 (565)
Q Consensus        30 ~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~~~-~~~~~~~~~~~~a~~~~~~~  107 (565)
                      .=||+..+.|.|+.+..|+|..++++..+.|-++...+.+++||++||.+ |||...-+ +++...++.+..-.+   |+
T Consensus       267 vR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~---~~  343 (448)
T COG2271         267 VRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA---PN  343 (448)
T ss_pred             HHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC---CC
Confidence            34677888999999999999999999999999999999999999999986 77755544 333333333333333   22


Q ss_pred             cCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH-HHHH
Q 008450          108 LRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL-GTLM  186 (565)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-g~~l  186 (565)
                                         .+..+..++.++.|.-.-+..-.+-....|..|.+.      -|++.+....+..+ |.++
T Consensus       344 -------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~Glf~Yl~Ga~~  398 (448)
T COG2271         344 -------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVGLFAYLIGAAL  398 (448)
T ss_pred             -------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhhhHHHHhhHHh
Confidence                               246777788888887777766666677788888888      99999999999988 9999


Q ss_pred             HHHHHHHhcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          187 AVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       187 g~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      +-...|++.|.+||...|++..+..+++.+++..
T Consensus       399 a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         399 AGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             cCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998776666555544443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.01  E-value=7.2e-09  Score=112.29  Aligned_cols=174  Identities=14%  Similarity=0.087  Sum_probs=142.6

Q ss_pred             HHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccch--hHHHHHHHHHHHHHHHHHHH
Q 008450           25 LCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRY--KTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ++.+-+.-.+......|.++++|++..+...+.....+..++++.+.|++.||+ |.|  +++++++++..+..+...+.
T Consensus       291 ~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~~~i~~~g~~G  369 (477)
T PF11700_consen  291 FLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILWIIIPLYGLFG  369 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHHHH
Confidence            444446777888899999999999999999999999999999999999999999 999  88888887775543333331


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                       -.++               .....+.+.+++.-++.|+..|...+..-+++++..|+++      .+..++++....-.
T Consensus       370 -~~~~---------------~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~  427 (477)
T PF11700_consen  370 -FWPS---------------FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKA  427 (477)
T ss_pred             -hhhc---------------ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHH
Confidence             0010               0112346778888899999999999999999999999999      89999999999999


Q ss_pred             HHHHHHHHHHHhccccc-chhhHHHHHHHHHHHHHHHHhc
Q 008450          183 GTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~  221 (565)
                      .+.+||.+.|.+.+..| -|..+....++.++++++++..
T Consensus       428 ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  428 SSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999887 8888888877777777776554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.99  E-value=1.3e-08  Score=108.33  Aligned_cols=156  Identities=11%  Similarity=-0.075  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      +......+.|+.+++|+++.+.++......++..++.++.|+++||+ |+|+.+.++.++..++..+.++....+     
T Consensus       232 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~~~~~~~-----  305 (406)
T PRK15402        232 LAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLLLAALATVIS-----  305 (406)
T ss_pred             HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence            34444567788888999999999988888888999999999999999 999999999888888887777652111     


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                    ..+...++++.++.|+|.+...+.......+.. +++      |++..+..++...+|..+|+.+.
T Consensus       306 --------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~------~g~~~~~~~~~~~~~~~~g~~~~  364 (406)
T PRK15402        306 --------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS-DVS------KGTVSAAMGMLSMLIFTVGIELS  364 (406)
T ss_pred             --------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-ccc------ccHHHHHHHHHHHHHHHHHHHHH
Confidence                          123556778888899999887777666654443 355      99999999999999999999999


Q ss_pred             HHhcccccchhhHHHHHHHHHHH
Q 008450          192 VYIQDEISRSVGYGICSVAMFMA  214 (565)
Q Consensus       192 g~l~~~~gw~~~f~i~~~~~~~~  214 (565)
                      +++.+..++....+..++..++.
T Consensus       365 ~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        365 KHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HhcccCCchHHHHHHHHHHHHHH
Confidence            99988777665555544443333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.98  E-value=1.3e-08  Score=109.31  Aligned_cols=164  Identities=16%  Similarity=0.110  Sum_probs=108.5

Q ss_pred             HHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHH-Hhhhc
Q 008450           28 RLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAM-VTKLR  106 (565)
Q Consensus        28 ~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~-~~~~~  106 (565)
                      ...+|+...+++.|+.+.+|++..+.+...+...++..++.++.|+++||+ |||+++.++.++..+....... ..+.+
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~  334 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQNVS  334 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            566788889999999988999999999988888888889999999999999 9999887765544333222211 11100


Q ss_pred             ccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH-HHH
Q 008450          107 QLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL-GTL  185 (565)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-g~~  185 (565)
                                           +....+....+...+.+...+....+..|.+|++.      |+.++++.+...++ ...
T Consensus       335 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~  387 (432)
T PRK10406        335 ---------------------SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGG  387 (432)
T ss_pred             ---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHh
Confidence                                 11222222222223333344556788899999999      99999998876554 344


Q ss_pred             HHHHHHHHhccccc-chhhHHHHHHHHHHHHHHHHh
Q 008450          186 MAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       186 lg~~i~g~l~~~~g-w~~~f~i~~~~~~~~~~~~~~  220 (565)
                      ..|.+.+++. ..| |...+++.++..+++.+..++
T Consensus       388 ~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        388 SAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            5777778664 345 555666555555555444444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.98  E-value=1.4e-08  Score=110.32  Aligned_cols=157  Identities=10%  Similarity=-0.009  Sum_probs=114.7

Q ss_pred             HHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcc
Q 008450           40 TYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATH  119 (565)
Q Consensus        40 ~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  119 (565)
                      +++.+++|.+..+..+......+...++.+++|+++||+ |||++++.+.++.+++.++++....-+.            
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~------------  361 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA------------  361 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc------------
Confidence            445567888877777777778888999999999999999 9999999999999988887765421010            


Q ss_pred             cccCCcchhHHHHHHHHHHHHHhccc-cccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH------
Q 008450          120 TCEQASGFQMGVLYIALYLIALGTGG-LKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV------  192 (565)
Q Consensus       120 ~~~~~~~~~~~~l~i~r~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g------  192 (565)
                              .......+.++.+.+.+. ..|....++.|.+|+++      |++++++.+...++|.++++.+.+      
T Consensus       362 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~  427 (479)
T PRK10077        362 --------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKNS  427 (479)
T ss_pred             --------ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence                    011223334444444443 34778899999999888      999999999998888888865554      


Q ss_pred             HhcccccchhhHHHHHHHHHHHHHHHHhccc
Q 008450          193 YIQDEISRSVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       193 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      ++.+.++|++.|++.++..+++.++.+...+
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        428 WLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             chhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence            4446788999998877766666555544433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.98  E-value=6.2e-09  Score=109.97  Aligned_cols=154  Identities=7%  Similarity=0.013  Sum_probs=122.0

Q ss_pred             HHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008450           28 RLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQ  107 (565)
Q Consensus        28 ~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~  107 (565)
                      ...+.+....+++|+. +.|.+..+.+.+.+...++..+...+.|++.||+ |+|+++.++.+...++.++.+..+    
T Consensus       218 ~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~~~~~~~~----  291 (382)
T PRK11128        218 QGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRWGLMGSTT----  291 (382)
T ss_pred             HHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHhhh----
Confidence            3444456677788885 5899999999999988899999999999999999 999999999888888777766652    


Q ss_pred             cCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhh-HHHHHHHHH
Q 008450          108 LRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF-FFISLGTLM  186 (565)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lg~~l  186 (565)
                                          +++.+.+..++.|++.+...+....+..+. ++++      +++..+++. ....+|..+
T Consensus       292 --------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~g~~i  344 (382)
T PRK11128        292 --------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALAMGGSIAI  344 (382)
T ss_pred             --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHHHHHHHHH
Confidence                                367788899999999998888888887775 5555      777888775 445678899


Q ss_pred             HHHHHHHhcccccchhhHHHHHHHHHHHH
Q 008450          187 AVTVLVYIQDEISRSVGYGICSVAMFMAI  215 (565)
Q Consensus       187 g~~i~g~l~~~~gw~~~f~i~~~~~~~~~  215 (565)
                      ||.++|++.+..|+ ..|+..+++.+.++
T Consensus       345 g~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        345 MTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            99999999998887 45665555544443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.98  E-value=3.4e-09  Score=116.10  Aligned_cols=147  Identities=12%  Similarity=0.021  Sum_probs=125.2

Q ss_pred             hhHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHH
Q 008450           22 GIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAM  101 (565)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~  101 (565)
                      ...++....+++...+++.|++..+|.++.+.+.....+.++..++.+++|++.||+ |||+.+..+.++..++..++..
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~~~l~~  344 (495)
T PRK14995        266 VMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSFYGLAM  344 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHH
Confidence            356666677888888999999999999999999999999999999999999999999 9999998888888887776654


Q ss_pred             HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHH
Q 008450          102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS  181 (565)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (565)
                      ... .                    .+.+...+..++.|+|.|...+.....+.+..|+++      ++.+.++++...+
T Consensus       345 ~~~-~--------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~  397 (495)
T PRK14995        345 TDF-S--------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMAYE  397 (495)
T ss_pred             hcC-C--------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHHHH
Confidence            311 0                    123445667888999999999989999999999888      9999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 008450          182 LGTLMAVTVLVYIQD  196 (565)
Q Consensus       182 lg~~lg~~i~g~l~~  196 (565)
                      +|..+|+.+.|.+.+
T Consensus       398 lG~~~G~ai~g~i~~  412 (495)
T PRK14995        398 LGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998754

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.96  E-value=1.3e-08  Score=108.79  Aligned_cols=142  Identities=18%  Similarity=0.091  Sum_probs=106.4

Q ss_pred             HHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 008450           34 IAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC  113 (565)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  113 (565)
                      +...++.|+.+ .|.+..+.+.+.+.+.++..++.+++|+++||+ |||+.+..+.++..+..++....   +.      
T Consensus       250 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~---~~------  318 (426)
T PRK12307        250 IFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI---PQ------  318 (426)
T ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH---cc------
Confidence            55677888775 699999999999999999999999999999999 99999988887766655444332   11      


Q ss_pred             CCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHH
Q 008450          114 KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVY  193 (565)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~  193 (565)
                                   .....+.+..+..+.+..+..+..+.++.|.+|++.      |++++++.+...++|..+||.+.|+
T Consensus       319 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~g~  379 (426)
T PRK12307        319 -------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAATW  379 (426)
T ss_pred             -------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHHHH
Confidence                         012222222222333333444567788899999988      9999999999999999999999999


Q ss_pred             hcccccchhhHH
Q 008450          194 IQDEISRSVGYG  205 (565)
Q Consensus       194 l~~~~gw~~~f~  205 (565)
                      +.+.+|+....+
T Consensus       380 l~~~~g~~~~~~  391 (426)
T PRK12307        380 LGITMGLGAALT  391 (426)
T ss_pred             HHHcccHHHHHH
Confidence            999888765433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.96  E-value=5.9e-09  Score=107.70  Aligned_cols=177  Identities=17%  Similarity=0.111  Sum_probs=138.5

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      .++..--++.++...++.|++++++.++.+++.+...+.+...+.++.+|+|+||+ |.+|+.......++++..+..+.
T Consensus       226 lY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~~~~~l~~~  304 (417)
T COG2223         226 LYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMALAAALLSLF  304 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHHHHHHHHcc
Confidence            44445557888999999999999999999999999999999999999999999999 88888888888888877777665


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      .+  . .              .++.+...+++..+..++..|.-..++..++...+|++       -|...++..+..++
T Consensus       305 ~~--~-~--------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vga~G~l  360 (417)
T COG2223         305 LT--G-F--------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVGAIGGL  360 (417)
T ss_pred             cc--c-c--------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHHHhccc
Confidence            21  0 0              01223444555455556666666666778888888775       68889999999999


Q ss_pred             HHHHHHHHHHHhccccc-chhhHHHHHHHHHHHHHHHHhcccc
Q 008450          183 GTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLAGTKR  224 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~  224 (565)
                      |...-|...+...+..| |...|++...+.+++..+.+....|
T Consensus       361 GGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         361 GGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             cccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98888888898888887 9999999888888887776665544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.96  E-value=1e-08  Score=109.05  Aligned_cols=157  Identities=12%  Similarity=0.177  Sum_probs=109.7

Q ss_pred             HHHHHHhhhcCCCCchhhhhHHHHHH-HHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008450           36 VNLVTYLVGTMHLPSATSANIVTDFM-GTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK  114 (565)
Q Consensus        36 ~~l~~yl~~~l~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  114 (565)
                      ...++|+.+++|+++.+.+++.+... ++..++.+++|++.||+ |||+.+.++..+..+..+........++       
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~~-------  301 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTPK-------  301 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence            34556777889999999999887665 46889999999999999 9999888777776665544432211011       


Q ss_pred             CCCcccccCCcchhHHHHHHHH----HHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHH
Q 008450          115 ETATHTCEQASGFQMGVLYIAL----YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTV  190 (565)
Q Consensus       115 ~~~~~~~~~~~~~~~~~l~i~r----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i  190 (565)
                                   +.+.+.++.    +..|++.+...+....++.+.+|.++      +    +++....++|.+++..+
T Consensus       302 -------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~~~~  358 (402)
T PRK11902        302 -------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYVGPT  358 (402)
T ss_pred             -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHHHHH
Confidence                         134444443    34556666666777777777766554      4    45555567787767778


Q ss_pred             HHHhcccccchhhHHHHHHHHHHHHHHHHhccc
Q 008450          191 LVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       191 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      +|++.+..||+..|.+.+++.+++.++.+...+
T Consensus       359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~  391 (402)
T PRK11902        359 SGYLVEAYGWPGFYLMTVVIALPGLALLWLMRG  391 (402)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999988887776666544443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.94  E-value=2e-07  Score=98.74  Aligned_cols=145  Identities=16%  Similarity=0.299  Sum_probs=108.2

Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceee
Q 008450          356 GSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSV  435 (565)
Q Consensus       356 ~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  435 (565)
                      +...+++...-++.-.+..+++.++++-          +.+..|+.+-.+-++.+.++                   .++
T Consensus       409 Gv~~a~~~~gEI~~~ffs~klI~kiGHv----------~v~~lgLa~~~~Rf~~~S~L-------------------~n~  459 (618)
T KOG3762|consen  409 GVVSALCHAGEILFYFFSFKLIEKIGHV----------NVMYLGLACNVGRFLYYSYL-------------------QNP  459 (618)
T ss_pred             eehhhhhccchHHHHHHHHHHHHHhccc----------ceeeehhhHHHHHHHHHHHh-------------------cCc
Confidence            3456667777777777777776665553          23667777777777777664                   467


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHH-HHHHHHhhHHhhhhhhcccCCCCCCccccccccc
Q 008450          436 FLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTL-SLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRG  514 (565)
Q Consensus       436 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~-~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~  514 (565)
                      |.+++.-++.++..+.++.+..+|+...+|+++|+++.|+..... .+|..+|+.+++.+-+..+               
T Consensus       460 W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg---------------  524 (618)
T KOG3762|consen  460 WMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG---------------  524 (618)
T ss_pred             hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh---------------
Confidence            777778899999999999999999999999999999999998876 6888888888777643211               


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 008450          515 RLDLFYGLLAILSIINLVIYLICAVWYKPKK  545 (565)
Q Consensus       515 ~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~  545 (565)
                       ....|..+++.+++.++++...-+..+++.
T Consensus       525 -~~ttf~~~giAcl~~l~~~~~iq~~l~~~~  554 (618)
T KOG3762|consen  525 -ARTTFRIFGIACLVTLALFISIQLLLKRRG  554 (618)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence             245688888888888887766655444443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.94  E-value=1.8e-08  Score=106.51  Aligned_cols=157  Identities=12%  Similarity=0.020  Sum_probs=111.6

Q ss_pred             hHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 008450           31 TMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP  110 (565)
Q Consensus        31 ~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~  110 (565)
                      .+....++++|+.+.+|+++.+.+++.+.+.++..++.++.|++.||+ |+|+.+..+..+.+++.++.....+      
T Consensus       215 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~~~~~~------  287 (382)
T PRK10091        215 VFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLMLFFFGG------  287 (382)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHHHHHHh------
Confidence            344455677888888999999999999999999999999999999999 9999999888888877765543211      


Q ss_pred             CCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccC-CCCChHhhhhhcceeehhhHHHHHHHHHHHH
Q 008450          111 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQF-DEKDEKEKTQMAYFFSRFFFFISLGTLMAVT  189 (565)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~  189 (565)
                                       +.+...+..++.++|.++..+.......+.. +++.      ++...  .+...++|..+||.
T Consensus       288 -----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~g~~~Gp~  342 (382)
T PRK10091        288 -----------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAAG--GQIAFNLGSAIGAY  342 (382)
T ss_pred             -----------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHHH--HHHHHHHHHHHHHH
Confidence                             1334455555566665554444444444433 3333      44432  35567899999999


Q ss_pred             HHHHhccc-ccchhhHHHHHHHHHHHHHHHH
Q 008450          190 VLVYIQDE-ISRSVGYGICSVAMFMAIIIFL  219 (565)
Q Consensus       190 i~g~l~~~-~gw~~~f~i~~~~~~~~~~~~~  219 (565)
                      ++|++.+. .+|++.+.+.++.+++++....
T Consensus       343 ~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        343 CGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence            99999885 6899999987766555444433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.93  E-value=6.6e-09  Score=107.71  Aligned_cols=143  Identities=13%  Similarity=0.098  Sum_probs=119.5

Q ss_pred             HHHHhHHHH-HHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008450           27 ERLSTMGIA-VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKL  105 (565)
Q Consensus        27 ~~~~~~~~~-~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~  105 (565)
                      ....+.+.. ...+.|.++.+|.+..+.+++.....++..++.++.|++.||+ |||+.+..+..+.+++..+..+..+ 
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-  299 (365)
T TIGR00900       222 FNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLAILVVGLTPP-  299 (365)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHhhch-
Confidence            334444444 5566666666999999999999999999999999999999999 9999998887777776666655411 


Q ss_pred             cccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHH
Q 008450          106 RQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTL  185 (565)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  185 (565)
                                            +.+.+.+..++.|++.+...+...+++.|..|+++      |++..++.+...++|..
T Consensus       300 ----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~  351 (365)
T TIGR00900       300 ----------------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQFSLSHAAWP  351 (365)
T ss_pred             ----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHH
Confidence                                  25667888899999999999999999999999988      99999999999999999


Q ss_pred             HHHHHHHHhccccc
Q 008450          186 MAVTVLVYIQDEIS  199 (565)
Q Consensus       186 lg~~i~g~l~~~~g  199 (565)
                      +++.++|++.+.+|
T Consensus       352 ~g~~~~g~l~~~~g  365 (365)
T TIGR00900       352 LGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999987653

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.93  E-value=5.5e-09  Score=112.05  Aligned_cols=140  Identities=16%  Similarity=0.100  Sum_probs=110.4

Q ss_pred             HHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008450           37 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  116 (565)
Q Consensus        37 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (565)
                      ..+.|++..++ +..+.+++.+...++..++.+++|+++||+ |||+++.++.++.+++.++..+..             
T Consensus       244 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-------------  308 (437)
T TIGR00792       244 VQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLGYLIFFFAG-------------  308 (437)
T ss_pred             hhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence            34445544555 456677888888999999999999999999 999999999888888777765541             


Q ss_pred             CcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCh-HhhhhhcceeehhhHHHHHHHHHHHHHHHHhc
Q 008450          117 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDE-KEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  195 (565)
Q Consensus       117 ~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~  195 (565)
                                .+.+.+.+..++.|++.+...+...++++|..|.++. ..++.+|.++++++....+|..+|+.+.|++.
T Consensus       309 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll  378 (437)
T TIGR00792       309 ----------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL  378 (437)
T ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1245667778888999999999999999999875432 12233789999999999999999999999998


Q ss_pred             ccccch
Q 008450          196 DEISRS  201 (565)
Q Consensus       196 ~~~gw~  201 (565)
                      +..||.
T Consensus       379 ~~~G~~  384 (437)
T TIGR00792       379 GIIGYV  384 (437)
T ss_pred             HHcCCC
Confidence            877764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.92  E-value=1e-08  Score=112.36  Aligned_cols=158  Identities=15%  Similarity=0.105  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      ..+...+|.+..+.+|.++...|++.+++.+|..++.++.+++.+|+ ++++.+..+.+.++++.+.++++.+       
T Consensus       235 ~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~lal~~~-------  306 (524)
T PF05977_consen  235 SAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLALSPS-------  306 (524)
T ss_pred             hHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHhcchH-------
Confidence            33445567777788999999999999999999999999999999998 9999999999888888888888732       


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                       .+..+++.++.|++........++.+-...|++.      ||+.++++.+....+..+|..+.
T Consensus       307 -----------------~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~g~~~lGsll~  363 (524)
T PF05977_consen  307 -----------------FWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFFGGMPLGSLLW  363 (524)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHHHHHHHHHHHH
Confidence                             6778888899999999988888899999999998      99999999999999999999999


Q ss_pred             HHhcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          192 VYIQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       192 g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      |.+.+.+|-+..+.+.++..+++.++...
T Consensus       364 G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  364 GFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998877766555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.92  E-value=8e-09  Score=110.43  Aligned_cols=157  Identities=10%  Similarity=0.011  Sum_probs=109.7

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhh-cCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhH-HHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVG-TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKT-IAIFAAVQTLGTGMLA  100 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~-~~~~~~~~~~~~~~~a  100 (565)
                      ..+|....++++..++|.|+++ ..|++..+.+.+.....++..++.+++|+++||+ +||+. +.+..+...++. +..
T Consensus       250 ~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~~~-~~~  327 (412)
T TIGR02332       250 AYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAAGW-LLA  327 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHHHH-HHH
Confidence            3556666788889999999976 3578888999999999999999999999999999 87664 333333333332 222


Q ss_pred             HHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHH
Q 008450          101 MVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFI  180 (565)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (565)
                      ...  ++                     .....++..+.++|.....+.......|.+|+++      |+.++++.+...
T Consensus       328 ~~~--~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~~~~  378 (412)
T TIGR02332       328 SAT--DH---------------------NLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVINATG  378 (412)
T ss_pred             Hhc--CC---------------------HHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHHHhh
Confidence            110  11                     1112222223333333333334445566778777      999999999999


Q ss_pred             HHHHHHHHHHHHHhccccc-chhhHHHHHHH
Q 008450          181 SLGTLMAVTVLVYIQDEIS-RSVGYGICSVA  210 (565)
Q Consensus       181 ~lg~~lg~~i~g~l~~~~g-w~~~f~i~~~~  210 (565)
                      ++|.+++|.+.|.+.+..| |++.|++.+++
T Consensus       379 ~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       379 NIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            9999999999999999875 99999876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10054 putative transporter; Provisional

Probab=98.91  E-value=1.5e-08  Score=107.79  Aligned_cols=164  Identities=11%  Similarity=0.003  Sum_probs=124.7

Q ss_pred             HHHHHHhHHHHHHHHHHhhh--cCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           25 LCERLSTMGIAVNLVTYLVG--TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~--~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ++..+.+.......+.|+.+  +.+.+....+++...+.+......++.|++.||+ ++|+.+..++.+..++..+.++.
T Consensus       216 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~  294 (395)
T PRK10054        216 FLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIGLVGFIFS  294 (395)
T ss_pred             HHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHc
Confidence            33333333344556666643  3455666777888888777777888999999999 99999999988888887777654


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      .+                       +.+.+.++.++.++|.+...|....++.+..|++.      |+++++... ...+
T Consensus       295 ~~-----------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~~-~~~~  344 (395)
T PRK10054        295 GN-----------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQS-LGWL  344 (395)
T ss_pred             ch-----------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHHH-HHHH
Confidence            11                       25556778889999999888999999999999888      898887654 4568


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFL  219 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~  219 (565)
                      |..+||.++|++.++.|....|++.+.+..+++++..
T Consensus       345 G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        345 GAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888887666555555544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.91  E-value=2.6e-08  Score=105.68  Aligned_cols=151  Identities=15%  Similarity=0.112  Sum_probs=117.3

Q ss_pred             HHHHHHhhhcC---CCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           36 VNLVTYLVGTM---HLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        36 ~~l~~yl~~~l---~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      ...+.|+.+.+   +.+..+.+.+.+...+...++.++.|++.||+ |||+.+.++.++.+++..+.+.++         
T Consensus       236 ~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~~~~~~~---------  305 (396)
T TIGR00882       236 QQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRIIGSSFAT---------  305 (396)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhcC---------
Confidence            34667776654   55666778888888888899999999999999 999999999888888777666542         


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeeh-hhHHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR-FFFFISLGTLMAVTVL  191 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~lg~~i~  191 (565)
                                     +.+.+++.+++.|++.+........+..+..+++.      ++...+. ++....+|..+++.++
T Consensus       306 ---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~~~~~lg~~~~~~l~  364 (396)
T TIGR00882       306 ---------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQFAKQLAMIFLSTLA  364 (396)
T ss_pred             ---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHHHHHHHHHHHHHHhH
Confidence                           25667788888888876655555556666666665      6776766 5677899999999999


Q ss_pred             HHhcccccchhhHHHHHHHHHHHHHH
Q 008450          192 VYIQDEISRSVGYGICSVAMFMAIII  217 (565)
Q Consensus       192 g~l~~~~gw~~~f~i~~~~~~~~~~~  217 (565)
                      |++.+..||+.+|.+.+++.++..++
T Consensus       365 G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       365 GNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999887776655444

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.89  E-value=6.7e-09  Score=112.85  Aligned_cols=148  Identities=14%  Similarity=0.088  Sum_probs=123.6

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++..+.+++....++.|+++.+|.++.+.+++.....++..++.+++|++.||+ |||+++.++..+.+++..+..+.
T Consensus       263 ~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~~~~~~~  341 (485)
T TIGR00711       263 YMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGFYWRAFT  341 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHhcc
Confidence            44555667778888899999999999999999999999999999999999999999 99999999988888887776632


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      .. ++                   .+...+.+..++.|+|.+...+.......+..|+++      |+.+.++++...++
T Consensus       342 ~~-~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~  395 (485)
T TIGR00711       342 FT-PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNFTRQL  395 (485)
T ss_pred             CC-CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHHHHHH
Confidence            11 11                   124556667888999999888778888888888887      99999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q 008450          183 GTLMAVTVLVYIQDE  197 (565)
Q Consensus       183 g~~lg~~i~g~l~~~  197 (565)
                      |..+|+.+.+.+.++
T Consensus       396 g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       396 GGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.89  E-value=2e-08  Score=109.46  Aligned_cols=158  Identities=12%  Similarity=0.115  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchh-------HHHHHHHHHHHHHHHHHHHhh
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYK-------TIAIFAAVQTLGTGMLAMVTK  104 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-------~~~~~~~~~~~~~~~~a~~~~  104 (565)
                      ++...+++.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+       .+.+..++..+..++.+... 
T Consensus       269 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~-  346 (476)
T PLN00028        269 LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQTLGGVFCIWLGRAN-  346 (476)
T ss_pred             HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHHHHHHHHHHhcccc-
Confidence            34455678898888999999999999999999999999999999998 8752       22222222222222222221 


Q ss_pred             hcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHH
Q 008450          105 LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGT  184 (565)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~  184 (565)
                                             +.....+..++.+++.++..+...+++.+..| ++      ++...++.....++|.
T Consensus       347 -----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~g~lg~  396 (476)
T PLN00028        347 -----------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVISGLTGAGGNVGA  396 (476)
T ss_pred             -----------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhhhhhhccccHHH
Confidence                                   13334444555555554444445555555544 45      8888888777666777


Q ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhcc
Q 008450          185 LMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGT  222 (565)
Q Consensus       185 ~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~  222 (565)
                      .+++.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus       397 ~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        397 VLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            66665544 22345699999998877777766665553

>TIGR01272 gluP glucose/galactose transporter

Probab=98.88  E-value=2.8e-08  Score=102.09  Aligned_cols=147  Identities=10%  Similarity=0.109  Sum_probs=115.3

Q ss_pred             HhHHHHHHHHHHhhhc--CCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008450           30 STMGIAVNLVTYLVGT--MHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQ  107 (565)
Q Consensus        30 ~~~~~~~~l~~yl~~~--l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~  107 (565)
                      .-.++..+++.|+.+.  +|+++.+.+...+.+..+..+++.++++++||+ |+||++.++..+..++.++....+   .
T Consensus       155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~~~~~l~~~~~---~  230 (310)
T TIGR01272       155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAVLLSIGAALTH---G  230 (310)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHcC---C
Confidence            3445667799999753  799999999999999999999999999999999 999999888877777665444331   1


Q ss_pred             cCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHH
Q 008450          108 LRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMA  187 (565)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg  187 (565)
                                           .. ...+.++.|++.+..+|...++..+.+|++..     ++.  ++. .+..+|.+++
T Consensus       231 ---------------------~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~-----~as--ai~-~~~~~Gg~i~  280 (310)
T TIGR01272       231 ---------------------YV-AMWFVLALGLFNSIMFPTIFSLALNALGRHTS-----QGS--GIL-CLAIVGGAIV  280 (310)
T ss_pred             ---------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hhH--HHH-HHHHhcchHH
Confidence                                 11 22355578999999999999999998886531     333  443 5567999999


Q ss_pred             HHHHHHhcccccchhhHHHHHHH
Q 008450          188 VTVLVYIQDEISRSVGYGICSVA  210 (565)
Q Consensus       188 ~~i~g~l~~~~gw~~~f~i~~~~  210 (565)
                      |.+.|.+.|..|.+..|++..++
T Consensus       281 P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       281 PLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999888865544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.87  E-value=1.1e-08  Score=106.40  Aligned_cols=150  Identities=15%  Similarity=0.101  Sum_probs=109.4

Q ss_pred             HHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHH-H-HHHHHHHHHHHhh
Q 008450           27 ERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA-V-QTLGTGMLAMVTK  104 (565)
Q Consensus        27 ~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~-~-~~~~~~~~a~~~~  104 (565)
                      ......++..+++.|+.+.+|++..+.+.+.+.+.++..++.+++|+++||..+||+....... . ..++.......  
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--  305 (379)
T TIGR00881       228 VYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLN--  305 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcC--
Confidence            3344456667788999989999999999999999999999999999999986244443322111 1 11111111111  


Q ss_pred             hcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHH
Q 008450          105 LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGT  184 (565)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~  184 (565)
                       +.                   .+.....+..++.|....+..+....+..|.+|+++      |+++.++.+...++|.
T Consensus       306 -~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~  359 (379)
T TIGR00881       306 -PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFVGFFAYLGG  359 (379)
T ss_pred             -cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHHHHhhhhhh
Confidence             10                   123445566666776666666666788899999998      9999999999999999


Q ss_pred             HHHHHHHHHhcccccchhhH
Q 008450          185 LMAVTVLVYIQDEISRSVGY  204 (565)
Q Consensus       185 ~lg~~i~g~l~~~~gw~~~f  204 (565)
                      .++|.+.|++.+.+||+..|
T Consensus       360 ~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       360 ILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             hhhhhhHHHHHHhhcccccC
Confidence            99999999999999998765

>PRK10133 L-fucose transporter; Provisional

Probab=98.85  E-value=2.7e-08  Score=107.33  Aligned_cols=157  Identities=17%  Similarity=0.155  Sum_probs=119.8

Q ss_pred             hHHHHHHHhHHHHHHHHHHh-hhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYL-VGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAM  101 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl-~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~  101 (565)
                      ..++.....++...++++|+ ++.+|+++.+.++....+.++..++++++|++.||+ |||+++..+..+..++..+..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~  344 (438)
T PRK10133        266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAF  344 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555667788885 567899999999999999999999999999999999 9999998887776666555444


Q ss_pred             HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHH
Q 008450          102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS  181 (565)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (565)
                      .   +.                     . ....+..+.|+|.+...|...+...+.++++       .+.+.++..+ ..
T Consensus       345 ~---~~---------------------~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~l~~~-~~  391 (438)
T PRK10133        345 A---GG---------------------H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIVM-TI  391 (438)
T ss_pred             c---CC---------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchhHHhH-Hh
Confidence            3   11                     1 1245667789999999999999999998764       3555665543 44


Q ss_pred             HHHHHHHHHHHHhccccc-chhhHHHHHHHHHH
Q 008450          182 LGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFM  213 (565)
Q Consensus       182 lg~~lg~~i~g~l~~~~g-w~~~f~i~~~~~~~  213 (565)
                      +|..++|.+.|++.+..| -+..|++..++.+.
T Consensus       392 ~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~  424 (438)
T PRK10133        392 IGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_pred             ccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            678888899999999887 68888776555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.83  E-value=9.9e-08  Score=101.38  Aligned_cols=154  Identities=12%  Similarity=0.010  Sum_probs=114.1

Q ss_pred             HHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHH-HHHHHHHhhhc
Q 008450           28 RLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG-TGMLAMVTKLR  106 (565)
Q Consensus        28 ~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~-~~~~a~~~~~~  106 (565)
                      ..+.++...++++++.+++|++..+.+.+...+.++..++.++.|++.||. +|+ .+..+..+..+. .++....+   
T Consensus       229 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~~~l~~~~~---  303 (394)
T PRK10213        229 FAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSALVLTLWGS---  303 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHHHHHHHHhh---
Confidence            344455555655555668899999999999999999999999999999996 544 444443443333 33333321   


Q ss_pred             ccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHH
Q 008450          107 QLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLM  186 (565)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l  186 (565)
                                           +.+.+.+..++.|++.+...+..++++.+..|++       +++..+......++|..+
T Consensus       304 ---------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~lg~~~  355 (394)
T PRK10213        304 ---------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQVAVIQLANTC  355 (394)
T ss_pred             ---------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHHHHHHHHHHHH
Confidence                                 2556777888899999999999998999888743       455566777778999999


Q ss_pred             HHHHHHHhcccccchhhHHHHHHHHHHH
Q 008450          187 AVTVLVYIQDEISRSVGYGICSVAMFMA  214 (565)
Q Consensus       187 g~~i~g~l~~~~gw~~~f~i~~~~~~~~  214 (565)
                      |+.++|++.+..|++..++..+++.++.
T Consensus       356 G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        356 GAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            9999999999999998888876554433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.83  E-value=6.1e-08  Score=101.69  Aligned_cols=151  Identities=8%  Similarity=0.081  Sum_probs=112.0

Q ss_pred             HHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008450           29 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQL  108 (565)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~  108 (565)
                      ..++......+.|+.+++|.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+..++.+++.+....+. 
T Consensus       220 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  297 (385)
T TIGR00710       220 GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLEITAILGL-  297 (385)
T ss_pred             HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence            34455555667788888999999999999999999999999999999999 9999999888888887777665421110 


Q ss_pred             CCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH-HHHHH
Q 008450          109 RPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL-GTLMA  187 (565)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-g~~lg  187 (565)
                                        .....+.+..++.|+|.+...+.......|..| ++      ++++.++.+..... |.+.+
T Consensus       298 ------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~~g~i~~  352 (385)
T TIGR00710       298 ------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTLRLVLGAIVG  352 (385)
T ss_pred             ------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHHHHHHHHHHH
Confidence                              124455666777899999988888888888876 45      88899988877654 56555


Q ss_pred             HHHHHHhcccccchhhHHHH
Q 008450          188 VTVLVYIQDEISRSVGYGIC  207 (565)
Q Consensus       188 ~~i~g~l~~~~gw~~~f~i~  207 (565)
                      +. .+.+.+..+|...+...
T Consensus       353 ~~-~~~~~~~~~~~~~~~~~  371 (385)
T TIGR00710       353 YL-VSLIHGNTAWPMSLSCL  371 (385)
T ss_pred             HH-HHhccccChHHHHHHHH
Confidence            55 44555555555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00896 CynX cyanate transporter

Probab=98.81  E-value=3.8e-08  Score=102.66  Aligned_cols=143  Identities=15%  Similarity=0.046  Sum_probs=111.0

Q ss_pred             HHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008450           26 CERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKL  105 (565)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~  105 (565)
                      +....+++...+++.|++ +.|.+..+.+.+.+.+.++..+++++.|+++||+.+||+++.++.++.+++.+++.+..+ 
T Consensus       208 ~~~~~~~~~~~~lp~~~~-~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-  285 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILI-SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM-  285 (355)
T ss_pred             HHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh-
Confidence            334556677778888886 479999999999999999999999999999999845666777777778777776665521 


Q ss_pred             cccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHH
Q 008450          106 RQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTL  185 (565)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  185 (565)
                                             .... ...++.|++.|...|...+.+.+..++++.     ++...++.+...++|.+
T Consensus       286 -----------------------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~  336 (355)
T TIGR00896       286 -----------------------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ-----AAALSAMAQSIGYLLAA  336 (355)
T ss_pred             -----------------------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH-----HHHHHHHHHHHHHHHHH
Confidence                                   1111 234678999999988888887776654331     68888888888889999


Q ss_pred             HHHHHHHHhccccc
Q 008450          186 MAVTVLVYIQDEIS  199 (565)
Q Consensus       186 lg~~i~g~l~~~~g  199 (565)
                      +||.+.|++.++.|
T Consensus       337 ~gp~~~G~l~~~~g  350 (355)
T TIGR00896       337 LGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=1.6e-06  Score=92.28  Aligned_cols=105  Identities=14%  Similarity=0.112  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHH
Q 008450           57 VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIAL  136 (565)
Q Consensus        57 ~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r  136 (565)
                      ..+......+.+++++.+.|+. |.|..+.++...+..-.+.+-+.                         +-+.++++-
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-------------------------N~y~~yfss  109 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-------------------------NSYYLYFSS  109 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-------------------------chHHHHHHH
Confidence            5566777888999999999998 99999999988887765555443                         367899999


Q ss_pred             HHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHH
Q 008450          137 YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVY  193 (565)
Q Consensus       137 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~  193 (565)
                      .+.|+|.+..+...-.++++..+++.      +.+..++.......+.++|.++...
T Consensus       110 allG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  110 ALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             HHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhhee
Confidence            99999999999999999999988887      8888888888888887777554443

>TIGR00895 2A0115 benzoate transport

Probab=98.81  E-value=3.2e-08  Score=103.90  Aligned_cols=137  Identities=12%  Similarity=0.015  Sum_probs=107.1

Q ss_pred             HHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008450           26 CERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKL  105 (565)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~  105 (565)
                      +....+++...+++ ++.+++|.+..+.+++.+...++..++.+++|+++||+ |||+.+.. ..+..+...+.....  
T Consensus       261 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~--  335 (398)
T TIGR00895       261 MLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALL-LLLGAVFAVLVGSTL--  335 (398)
T ss_pred             HHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHH-HHHHHHHHHHHHHHh--
Confidence            33444555555555 66678899999999999999999999999999999999 98854443 333333333332210  


Q ss_pred             cccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHH
Q 008450          106 RQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTL  185 (565)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  185 (565)
                      +                     +...+++..++.|++.++..+...+++.|.+|+++      |++++++......+|..
T Consensus       336 ~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~  388 (398)
T TIGR00895       336 F---------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIGRLGAI  388 (398)
T ss_pred             h---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHHHHHHH
Confidence            1                     24556778888999999999999999999999988      99999999999999999


Q ss_pred             HHHHHHHHh
Q 008450          186 MAVTVLVYI  194 (565)
Q Consensus       186 lg~~i~g~l  194 (565)
                      +||.++|++
T Consensus       389 ~g~~~~G~l  397 (398)
T TIGR00895       389 IGPILAGYL  397 (398)
T ss_pred             HHHHhHHhc
Confidence            999999976

>PRK09848 glucuronide transporter; Provisional

Probab=98.80  E-value=1.8e-08  Score=108.84  Aligned_cols=155  Identities=15%  Similarity=0.155  Sum_probs=117.9

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++....+.......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..++.++..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~~~~~~~~  314 (448)
T PRK09848        236 GALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCGYLLFFWV  314 (448)
T ss_pred             HHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHc
Confidence            34445555555555666777778888766655555555677888999999999999 99999999998888887777654


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHh-hhhhcceeehhhHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKE-KTQMAYFFSRFFFFIS  181 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~  181 (565)
                         +.                   .+.+.+++..++.|+|.+...+...++.+|..|+++.++ ++++|..++.+.....
T Consensus       315 ---~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~k  372 (448)
T PRK09848        315 ---SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRK  372 (448)
T ss_pred             ---Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHH
Confidence               11                   135567777888999999999999999999988654221 2235888899999999


Q ss_pred             HHHHHHHHHHHHhcccccc
Q 008450          182 LGTLMAVTVLVYIQDEISR  200 (565)
Q Consensus       182 lg~~lg~~i~g~l~~~~gw  200 (565)
                      +|..+|+.+.+.+.+..||
T Consensus       373 lg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        373 CGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHcCC
Confidence            9999999999987766555

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.80  E-value=4e-08  Score=104.60  Aligned_cols=152  Identities=9%  Similarity=0.027  Sum_probs=111.8

Q ss_pred             HHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008450           35 AVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK  114 (565)
Q Consensus        35 ~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  114 (565)
                      ...++.|+++..+ ++.+.+++.+...++......+.+++.||..+.++.+..+.++..++..+.+.+++          
T Consensus       228 ~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~----------  296 (400)
T PRK11646        228 MLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN----------  296 (400)
T ss_pred             HHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh----------
Confidence            3456777766555 67888888888777666555555666654327677777787778877777766522          


Q ss_pred             CCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHh
Q 008450          115 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI  194 (565)
Q Consensus       115 ~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l  194 (565)
                                    .+.+.+...+.++|.+...|...+++.|..|+++      |++.+++++...++|..+||.++|++
T Consensus       297 --------------~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l  356 (400)
T PRK11646        297 --------------LQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWL  356 (400)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHH
Confidence                          4456666778888888888999999999999998      99999999999999999999999999


Q ss_pred             cccc---c-chhhHHHHHHHHHHHHHH
Q 008450          195 QDEI---S-RSVGYGICSVAMFMAIII  217 (565)
Q Consensus       195 ~~~~---g-w~~~f~i~~~~~~~~~~~  217 (565)
                      .+..   + ....+++.++..++..+.
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        357 FDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            8764   2 345555555554444433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.79  E-value=7.3e-08  Score=116.17  Aligned_cols=150  Identities=12%  Similarity=0.131  Sum_probs=124.0

Q ss_pred             HhHHHHHHHHHHhhhcCCCCch-hhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008450           30 STMGIAVNLVTYLVGTMHLPSA-TSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQL  108 (565)
Q Consensus        30 ~~~~~~~~l~~yl~~~l~~s~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~  108 (565)
                      ..+....+++.|+.+.+|++.. +.+++.+.+.++.+++.+++|+++||+ ++++++.++.++.+++.++..+..     
T Consensus       247 ~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-----  320 (1146)
T PRK08633        247 ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSLFLLPTAP-----  320 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHHHHHHHhh-----
Confidence            3445566788899989999999 999999999999999999999999999 999999888888887777776652     


Q ss_pred             CCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHH
Q 008450          109 RPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV  188 (565)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~  188 (565)
                                         +.+.++++.++.|++.++..+...+++.+..|++.      |++++++.++..++|.++++
T Consensus       321 -------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~~~lg~~~~~  375 (1146)
T PRK08633        321 -------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFLQNVGMLLFL  375 (1146)
T ss_pred             -------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHHHHHHHHHHH
Confidence                               25667788899999999999999999999999998      99999999999999998888


Q ss_pred             HHHHHhcc-cccchhhHHHHHHH
Q 008450          189 TVLVYIQD-EISRSVGYGICSVA  210 (565)
Q Consensus       189 ~i~g~l~~-~~gw~~~f~i~~~~  210 (565)
                      .+++.+.. .+++...|.+.+.+
T Consensus       376 ~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        376 ALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHH
Confidence            88776654 23455556554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.78  E-value=8.7e-08  Score=99.22  Aligned_cols=159  Identities=14%  Similarity=0.178  Sum_probs=131.7

Q ss_pred             HhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccC
Q 008450           30 STMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLR  109 (565)
Q Consensus        30 ~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~  109 (565)
                      +.-.+......|-..++|++..+...+.....+..+++++++|+|.||+ |-|+++.+++++..+.++..-+..      
T Consensus       267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~~~~~~~~~------  339 (438)
T COG2270         267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIAALYLIFLE------  339 (438)
T ss_pred             hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHHHHHHHHcc------
Confidence            3445566677787889999999999999999999999999999999999 999999999999888777766551      


Q ss_pred             CCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHH
Q 008450          110 PRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVT  189 (565)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~  189 (565)
                                        +...+.+.-++.|...|+..++.-++.++..|+++      -+++++++......+..+||.
T Consensus       340 ------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~  395 (438)
T COG2270         340 ------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPF  395 (438)
T ss_pred             ------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHH
Confidence                              24557777788999999999999999999999999      899999999999999999999


Q ss_pred             HHHHhccccc-chhhHHHHHHHHHHHHHHHH
Q 008450          190 VLVYIQDEIS-RSVGYGICSVAMFMAIIIFL  219 (565)
Q Consensus       190 i~g~l~~~~g-w~~~f~i~~~~~~~~~~~~~  219 (565)
                      ..+.+.+..| -|..+....++..+.++++.
T Consensus       396 lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~  426 (438)
T COG2270         396 LVAVITQITGSSRAGVLSIIVLLLIGLLLLL  426 (438)
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence            9999887655 55565555445444444433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.77  E-value=1.4e-07  Score=100.24  Aligned_cols=155  Identities=10%  Similarity=-0.017  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      ......++.|+++.+|.++.+.|.+.+.+.++..++.++.+++.||+ ++|+++..++. ..+..++.++.+        
T Consensus       222 ~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~--------  291 (393)
T PRK11195        222 ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH--------  291 (393)
T ss_pred             HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh--------
Confidence            34445566788888999999999999999999999999999999998 99988877753 333333333331        


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                      +.+...+..++.|++.+...+...+.+.+..|++.     .+|++++..+...++|..++..+.
T Consensus       292 ----------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~~~  350 (393)
T PRK11195        292 ----------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLGLY  350 (393)
T ss_pred             ----------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHHHH
Confidence                            24556677778899999988888888877644432     168999999999999999999888


Q ss_pred             HHhcccccchhhHHHHHHHHHHHHHHH
Q 008450          192 VYIQDEISRSVGYGICSVAMFMAIIIF  218 (565)
Q Consensus       192 g~l~~~~gw~~~f~i~~~~~~~~~~~~  218 (565)
                      +.+ +.+|-+..+++.++..++...+.
T Consensus       351 ~~~-~~~~~~~~~~~~~~~~~~~~~~~  376 (393)
T PRK11195        351 SLL-VKLGVPVVAVIVGFGLLVALAMA  376 (393)
T ss_pred             HHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence            865 55777777776655555444443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.74  E-value=1.1e-07  Score=114.55  Aligned_cols=172  Identities=13%  Similarity=-0.072  Sum_probs=125.3

Q ss_pred             HHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008450           26 CERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKL  105 (565)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~  105 (565)
                      +..+.+.++...++.|+.+.+|.+..+.+++.+.+.++..++.++.|+++|+. ++++.+..+.++..++.+.+++... 
T Consensus       236 ~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~-  313 (1140)
T PRK06814        236 WFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFGLDLAFASS-  313 (1140)
T ss_pred             HHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHHHHHHhccc-
Confidence            33344556677899999999999999999999999999999999999999988 7777666666666555544443200 


Q ss_pred             cccCCCCCCCCCccccc--CCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHH
Q 008450          106 RQLRPRPCKETATHTCE--QASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLG  183 (565)
Q Consensus       106 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg  183 (565)
                      .....     ......-  -....+.+.+.++.++.|++.+...+...+++.+..|++.      ||++++..+...++|
T Consensus       314 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~~~~~~~  382 (1140)
T PRK06814        314 SVPAE-----PAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAANNVLNAAF  382 (1140)
T ss_pred             ccccc-----cccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHHHHHHHHH
Confidence            00000     0000000  0000134567788888999999999999999999999999      999999999999999


Q ss_pred             HHHHHHHHHHhcc-cccchhhHHHHHHH
Q 008450          184 TLMAVTVLVYIQD-EISRSVGYGICSVA  210 (565)
Q Consensus       184 ~~lg~~i~g~l~~-~~gw~~~f~i~~~~  210 (565)
                      ..+|+++++.+.+ ..++...|.+.+++
T Consensus       383 ~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        383 MVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            9999999998863 45666666655443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.74  E-value=9.7e-08  Score=102.52  Aligned_cols=155  Identities=19%  Similarity=0.164  Sum_probs=129.7

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++..+++.......+.|+++.+|.+ ...+++...+.+++.++.+++++++||+ |+|+++..+.++.+++.++..+.
T Consensus       233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~  310 (428)
T PF13347_consen  233 AFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALGFLLLFFL  310 (428)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHHHHHHHHH
Confidence            666776777766777888888888887 5678888899999999999999999999 99999999999999999988887


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChH-hhhhhcceeehhhHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEK-EKTQMAYFFSRFFFFIS  181 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~  181 (565)
                      ..                      .+.+.+++..++.|++.+...+...++++|..+.++.+ .|++.|..++.+.....
T Consensus       311 ~~----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k  368 (428)
T PF13347_consen  311 GP----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIK  368 (428)
T ss_pred             Hh----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhH
Confidence            31                      24788999999999999999999999999999876533 23346788888888899


Q ss_pred             HHHHHHHHHHHHhcccccch
Q 008450          182 LGTLMAVTVLVYIQDEISRS  201 (565)
Q Consensus       182 lg~~lg~~i~g~l~~~~gw~  201 (565)
                      +|..+++.+.+.+.+..||.
T Consensus       369 ~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  369 IGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HHHHHHHHHHHHHHHHhCcC
Confidence            99999999999887665554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.74  E-value=1.3e-07  Score=102.62  Aligned_cols=169  Identities=15%  Similarity=0.045  Sum_probs=114.7

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHH--------HHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTI--------AIFAAVQTL   94 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~--------~~~~~~~~~   94 (565)
                      ..++....++....++|.|+.+.+|++..+.+++.+...++..++.+++|+++||+ ++|+..        ..+......
T Consensus       269 ~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~  347 (465)
T TIGR00894       269 AIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIFNGIGGLGP  347 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHH
Confidence            45666677788889999999999999999999999999999999999999999997 544321        111111111


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceee
Q 008450           95 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  174 (565)
Q Consensus        95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (565)
                      +..+...... .                    .+....++...+.+.+.++..+.......|..|. .      +|.+.+
T Consensus       348 ~~~~~~~~~~-~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g  399 (465)
T TIGR00894       348 GIFAYALPYL-S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------LGFIKG  399 (465)
T ss_pred             HHHHHHHHHc-C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------HHHHHH
Confidence            1111111100 0                    1133344444555555555555555555565554 5      899999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhcccc---cchhhHHHHHHHHHHHHHHHHh
Q 008450          175 RFFFFISLGTLMAVTVLVYIQDEI---SRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       175 ~~~~~~~lg~~lg~~i~g~l~~~~---gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      +.+...++|..++|.+.|++.+..   +|+.+|.+.++..+++.++...
T Consensus       400 ~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       400 ITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            999999999999999999887643   4888888887776666555443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.73  E-value=2.5e-07  Score=99.39  Aligned_cols=178  Identities=11%  Similarity=0.050  Sum_probs=122.5

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..+|.--+|.+...+++.|+++.++  ............+...+.+|++|+|+||+ |+||++.++.+...++.......
T Consensus       260 ly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~~~~~l~  336 (462)
T PRK15034        260 LYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFSALLFLT  336 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHHHHHHHH
Confidence            5666655667777789999887653  33222233445677889999999999999 99999999888777766443332


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCC------------C---hHhhh
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEK------------D---EKEKT  167 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~------------~---~~~~~  167 (565)
                        +|.                .+..+++.+.+..++..++.|.-..+...++.+.+|++            +   ...|+
T Consensus       337 --lp~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~  398 (462)
T PRK15034        337 --LPG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVT  398 (462)
T ss_pred             --hcc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHH
Confidence              121                01134666666666666777777777888888888741            0   11233


Q ss_pred             hhcceeehhhHHHHHHHHHHHHHHHHhcccc-cchhhHHHHHHHHHHHHHHHHhc
Q 008450          168 QMAYFFSRFFFFISLGTLMAVTVLVYIQDEI-SRSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       168 ~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~-gw~~~f~i~~~~~~~~~~~~~~~  221 (565)
                      +-|...++..+...+|..+-|.+.|...+.. ++...|+...+..+++..+.+..
T Consensus       399 ~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        399 ETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888888888888887777766654 48888888887777776665553

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=1e-07  Score=93.17  Aligned_cols=149  Identities=15%  Similarity=0.140  Sum_probs=120.5

Q ss_pred             HHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHH-HHHHHHHHHHHh
Q 008450           25 LCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV-QTLGTGMLAMVT  103 (565)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~~~~~~~a~~~  103 (565)
                      .|.-..++=....-+.++++.+|+|+.+++.+.+.....+.+.+++.|.++||+ |++-..+.+..+ ..++..+..++ 
T Consensus       274 v~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl~~H~~l~Ft-  351 (459)
T KOG4686|consen  274 VLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTLLGHSGLFFT-  351 (459)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHHHHhhhHHhh-
Confidence            333344444455567889999999999999999999999999999999999999 999877766554 44466666665 


Q ss_pred             hhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHH
Q 008450          104 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLG  183 (565)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg  183 (565)
                                               ++.-+++..+.|+..+....+.-++++...|+++      .|++++..+...|+|
T Consensus       352 -------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLg  400 (459)
T KOG4686|consen  352 -------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLG  400 (459)
T ss_pred             -------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhh
Confidence                                     3445667778899988887788899999999999      999999999999999


Q ss_pred             HHHHHHHHHHhccccc---chhhHHH
Q 008450          184 TLMAVTVLVYIQDEIS---RSVGYGI  206 (565)
Q Consensus       184 ~~lg~~i~g~l~~~~g---w~~~f~i  206 (565)
                      -++.|++.|.+.++-|   |--+|.+
T Consensus       401 la~i~Iiag~i~d~~g~y~~le~ffl  426 (459)
T KOG4686|consen  401 LAFIPIIAGFIADGDGSYDNLEAFFL  426 (459)
T ss_pred             hhHHhhhhheeecCCCchhhHHHHHH
Confidence            9999999999998765   4344443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.69  E-value=2e-07  Score=102.32  Aligned_cols=160  Identities=14%  Similarity=0.098  Sum_probs=101.6

Q ss_pred             HhHHHHHHHHHHhhhcCCCCchhhhh------------HHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHH
Q 008450           30 STMGIAVNLVTYLVGTMHLPSATSAN------------IVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG   97 (565)
Q Consensus        30 ~~~~~~~~l~~yl~~~l~~s~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~   97 (565)
                      .+|++..+++.++ ++.|++..+.+.            ......++..++.+++++++||+ |||++++++..+.+++..
T Consensus       303 ~~y~~~~~~p~i~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~~~~~~~  380 (502)
T TIGR00887       303 AFYGVNLNQKVIL-SAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFFILTVLFF  380 (502)
T ss_pred             HHHccccccHHHH-HHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHH
Confidence            3444444455555 466776543221            12233445566788899999999 999999988888777766


Q ss_pred             HHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhh
Q 008450           98 MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  177 (565)
Q Consensus        98 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (565)
                      +.++.....+                    ....+....+....+..+..+....+.+|.+|.+.      |+++.++.+
T Consensus       381 ~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~g~~~  434 (502)
T TIGR00887       381 VLGFAYNHLS--------------------THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAHGISA  434 (502)
T ss_pred             HHHHHHHhcc--------------------hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHHHHHH
Confidence            6655421000                    00111111111222222334566677899999999      999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccc----------ccchhhHHHHHHHHHHHHHH
Q 008450          178 FFISLGTLMAVTVLVYIQDE----------ISRSVGYGICSVAMFMAIII  217 (565)
Q Consensus       178 ~~~~lg~~lg~~i~g~l~~~----------~gw~~~f~i~~~~~~~~~~~  217 (565)
                      ....+|.+++|.+.+++.+.          .++...|++.++..+++.+.
T Consensus       435 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       435 ASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             HHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            99999999999999988773          34455677666665555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.68  E-value=5.5e-08  Score=106.12  Aligned_cols=166  Identities=16%  Similarity=0.206  Sum_probs=138.0

Q ss_pred             HHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcccc--chhHHHHHHHHHHHHHHHHHHH
Q 008450           25 LCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLG--RYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      .+..++++.....++.|.. +.+++..+++.++++..+...+++++.|+++|+. .  ++.+..++++..++....+++.
T Consensus       308 ~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~gl~~~~~p~~  385 (509)
T KOG2504|consen  308 LFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIAGLARLFLPFA  385 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHHHHHHHHHHHh
Confidence            3444566666667777765 8999999999999999999999999999999998 6  3444555555566666556555


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      +                        ++..+.+.-.+.|++.|.+.+..+..+.|..+.++      ...++++......+
T Consensus       386 ~------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~gi  435 (509)
T KOG2504|consen  386 T------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQGI  435 (509)
T ss_pred             c------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHhHH
Confidence            2                        27789999999999999999999999999999998      99999999999999


Q ss_pred             HHHHHHHHHHHhccccc-chhhHHHHHHHHHHHHHHHHhcc
Q 008450          183 GTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLAGT  222 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~  222 (565)
                      +.++||++.|++.+..+ |...|+..++..+++..+.++..
T Consensus       436 ~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  436 GALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999999999888 99999999988887776655544

>PRK11043 putative transporter; Provisional

Probab=98.63  E-value=6.4e-07  Score=95.07  Aligned_cols=148  Identities=9%  Similarity=-0.039  Sum_probs=108.0

Q ss_pred             HHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008450           29 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQL  108 (565)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~  108 (565)
                      ..++.....++.|++ ++|++..+.++....+.++..++..+++++.||+ |+|+.+.......+++.+.+......+. 
T Consensus       217 ~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  293 (401)
T PRK11043        217 AAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLSH-  293 (401)
T ss_pred             HHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence            344555566677765 5899999999988888889999999999999999 9999877766666555444333211111 


Q ss_pred             CCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHH
Q 008450          109 RPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV  188 (565)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~  188 (565)
                                        .....+.+...+.|++.+...|.......+..|+ +      ++++.++++.....+...++
T Consensus       294 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~~~~~~~~  348 (401)
T PRK11043        294 ------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQLGLCFLAS  348 (401)
T ss_pred             ------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHHHHHHHHH
Confidence                              1244555667778889999889888888887764 5      89999999988888888888


Q ss_pred             HHHHHhcccccchhhH
Q 008450          189 TVLVYIQDEISRSVGY  204 (565)
Q Consensus       189 ~i~g~l~~~~gw~~~f  204 (565)
                      .+.|.+.+.......+
T Consensus       349 ~~~g~l~~~~~~~~~~  364 (401)
T PRK11043        349 LLVSALISTPLLTTGS  364 (401)
T ss_pred             HHHHHccCCChhHHHH
Confidence            8888887654444433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.62  E-value=7e-07  Score=94.48  Aligned_cols=138  Identities=12%  Similarity=0.023  Sum_probs=92.5

Q ss_pred             HHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008450           36 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE  115 (565)
Q Consensus        36 ~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  115 (565)
                      ...+.|+.+++|++..+.+.+.+...+...++.++.|++.||+ |||+++.++..+..++.++..+...           
T Consensus       224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------  291 (392)
T PRK10473        224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSPS-----------  291 (392)
T ss_pred             HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            3345677788999999999999999999999999999999999 9999999999888888777776522           


Q ss_pred             CCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhc
Q 008450          116 TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  195 (565)
Q Consensus       116 ~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~  195 (565)
                                   .........+.+.|.+...+..  +..+..|.++      |+   +.......++..+|+.+++++.
T Consensus       292 -------------~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~------~~---g~~~~~~~~~~~~g~~~~~~l~  347 (392)
T PRK10473        292 -------------HAVSLFGITLICAGFSVGFGVA--MSQALGPFSL------RA---GVASSTLGIAQVCGSSLWIWLA  347 (392)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcc------cc---cHHHHHHHHHHHHHHHHHHHHH
Confidence                         2223333333333333322222  2233334433      33   3334455677777888888888


Q ss_pred             ccccchhhHHHHHH
Q 008450          196 DEISRSVGYGICSV  209 (565)
Q Consensus       196 ~~~gw~~~f~i~~~  209 (565)
                      +..|+.....+.+.
T Consensus       348 ~~~g~~~~~~~~~~  361 (392)
T PRK10473        348 AVLGISAWNMLIGI  361 (392)
T ss_pred             HHhccchhHHHHHH
Confidence            77777654444443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.61  E-value=4.1e-08  Score=102.43  Aligned_cols=145  Identities=17%  Similarity=0.224  Sum_probs=119.2

Q ss_pred             cchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCccee
Q 008450          355 AGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVS  434 (565)
Q Consensus       355 ~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  434 (565)
                      .++++....+..+++.|+.+.+.|++.||+.          +.+|..+..++.+.-++.                   ..
T Consensus        70 ~Gll~~vf~v~~~i~sPl~gyLadryNR~~v----------~~vG~~iW~~Av~~~~fs-------------------~~  120 (493)
T KOG1330|consen   70 LGLLQTVFIVVFMIASPLFGYLADRYNRKRV----------IAVGIFIWTLAVFASGFS-------------------NH  120 (493)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhcCcceE----------EeeHHHHHHHHHHHHHHH-------------------HH
Confidence            4566777788889999999999888887744          788888888888877764                   25


Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccc
Q 008450          435 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRG  514 (565)
Q Consensus       435 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~  514 (565)
                      +|.+.+.-.+.|+||+...|..+.++.|.+|++.|++..++++++..+|+.+|-..++.+...+.     .|        
T Consensus       121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W--------  187 (493)
T KOG1330|consen  121 FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW--------  187 (493)
T ss_pred             HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce--------
Confidence            66678888999999999999999999999999999999999999999999998888877754321     13        


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 008450          515 RLDLFYGLLAILSIINLVIYLICAVWYKP  543 (565)
Q Consensus       515 ~~~~~f~~~a~l~lv~~~~~~~~~~~~~~  543 (565)
                        .+.|.+.+++.++..++.+++.++-.+
T Consensus       188 --r~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  188 --RWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             --EEEEEeehHHHHHHHHHHHhhccCccc
Confidence              456788999999988888887766543

>TIGR00901 2A0125 AmpG-related permease

Probab=98.60  E-value=2.4e-07  Score=96.65  Aligned_cols=137  Identities=15%  Similarity=0.110  Sum_probs=106.3

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHH-HHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFM-GTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      .++....++.....+++|+.+ +|+++.+.+.+.+.+. ++..++.+++|+++||+ |||+.+.++.++..++..+..+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~  295 (356)
T TIGR00901       218 IVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALTNAGFVWL  295 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456667778889999886 9999999998888776 57889999999999999 99999998888887776655543


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS  181 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (565)
                      .+  +        . ||.++.  ..+.+.+..+.++.+++.+...+...+++.+.+|+++      |++.+++++...+
T Consensus       296 ~~--~--------~-~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~  355 (356)
T TIGR00901       296 AS--N--------G-HHDGIT--FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLSA  355 (356)
T ss_pred             Hh--c--------C-cccccc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHh
Confidence            11  0        0 000011  1235667778888999999999999999999999999      9999998877655

>TIGR00898 2A0119 cation transport protein

Probab=98.58  E-value=7e-07  Score=97.87  Aligned_cols=132  Identities=13%  Similarity=-0.017  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHH
Q 008450           58 TDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALY  137 (565)
Q Consensus        58 ~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~  137 (565)
                      ....+....+.+++++++||+ |||+++.++.++.+++.++..+..+                      .......+..+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~  418 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV----------------------DLYFLRTALAV  418 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC----------------------CchHHHHHHHH
Confidence            344566778888999999999 9999999998888888777766521                      11233445555


Q ss_pred             HHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Q 008450          138 LIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIII  217 (565)
Q Consensus       138 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~  217 (565)
                      +.+++.++..+....+..|.+|++.      |+.++++.+....+|.+++|.+.+ + ...++..++.+.+++.+++.++
T Consensus       419 ~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~  490 (505)
T TIGR00898       419 LGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGIL  490 (505)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHH
Confidence            6667777777888899999999998      999999999999999999999988 4 3456777887777666655554


Q ss_pred             HHh
Q 008450          218 FLA  220 (565)
Q Consensus       218 ~~~  220 (565)
                      .++
T Consensus       491 ~~~  493 (505)
T TIGR00898       491 TLF  493 (505)
T ss_pred             HHc
Confidence            444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.57  E-value=1.6e-07  Score=96.93  Aligned_cols=132  Identities=23%  Similarity=0.239  Sum_probs=112.6

Q ss_pred             HHhHHHHHHHHHHhhhcCCCC-chhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008450           29 LSTMGIAVNLVTYLVGTMHLP-SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQ  107 (565)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~  107 (565)
                      +.+.....+++.|+.+.+|.+ ..+.+++.+...+...++.++.|+++||+ |+|+...+......++.+...+....  
T Consensus       220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--  296 (352)
T PF07690_consen  220 FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALGLLLLPFS--  296 (352)
T ss_dssp             HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCSHHH--
T ss_pred             HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            456667788888889999999 79999999999999999999999999998 99888888777777776666554221  


Q ss_pred             cCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHH
Q 008450          108 LRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMA  187 (565)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg  187 (565)
                                         .+.....+..++.|++.+...+....++.|..|+++      |+++.++.+...++|..+|
T Consensus       297 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~~~~ig  351 (352)
T PF07690_consen  297 -------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSIGSLGGIIG  351 (352)
T ss_dssp             -------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHC
Confidence                               135566678888999999999999999999999988      9999999999999999998


Q ss_pred             H
Q 008450          188 V  188 (565)
Q Consensus       188 ~  188 (565)
                      |
T Consensus       352 P  352 (352)
T PF07690_consen  352 P  352 (352)
T ss_dssp             H
T ss_pred             C
Confidence            7

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.57  E-value=1.8e-06  Score=90.93  Aligned_cols=158  Identities=11%  Similarity=-0.049  Sum_probs=106.8

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccch---hHHH-HHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRY---KTIA-IFAAVQTLGTGM   98 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr---~~~~-~~~~~~~~~~~~   98 (565)
                      ..+|....+|++..+++.|+.+ .|++.. .+.......+...++   .++++||. .||   +... ...+..++...+
T Consensus       200 ~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~~~a~~~~~  273 (368)
T TIGR00903       200 ILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAALLIAAFFLA  273 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHHHHHHHHHH
Confidence            5777888999999999999964 677754 555555544444444   57888876 543   3322 233333333333


Q ss_pred             HHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhH
Q 008450           99 LAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  178 (565)
Q Consensus        99 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (565)
                      .+...                        +.....+...+.+++.....+...++.+|.+|++.      |+++.++.+.
T Consensus       274 ~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G~~~~  323 (368)
T TIGR00903       274 LAFEL------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAGAIGF  323 (368)
T ss_pred             HHHcc------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccchhhH
Confidence            33221                        12233445556667777777778899999999999      9999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Q 008450          179 FISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIF  218 (565)
Q Consensus       179 ~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~  218 (565)
                      ..++|.+++|.+.+.+..  +.+..|.+.++..+++.+..
T Consensus       324 ~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       324 TSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            999999999998887763  66677777666655554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.56  E-value=1.2e-06  Score=89.00  Aligned_cols=161  Identities=15%  Similarity=0.093  Sum_probs=127.8

Q ss_pred             HHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008450           26 CERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKL  105 (565)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~  105 (565)
                      ..++.+|.++.++|.++. +.|+|..+.|++.+...+.+....+..-++++|...+|+........+.+|...+.+.   
T Consensus       219 lqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~---  294 (395)
T COG2807         219 LQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA---  294 (395)
T ss_pred             hhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh---
Confidence            456788999999999987 6799999999999999999999999999999988788888888888899998888877   


Q ss_pred             cccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHH
Q 008450          106 RQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTL  185 (565)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  185 (565)
                      |.                    +-..+.  -+++|+|.|+.+|....++.+..++.++     -++..+.-+-...+=+.
T Consensus       295 P~--------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSgmaQg~GYllAa  347 (395)
T COG2807         295 PG--------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSGMAQGVGYLLAA  347 (395)
T ss_pred             hh--------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHHHhhhhhHHHHh
Confidence            32                    122222  4889999999999999999999887662     45555555555556677


Q ss_pred             HHHHHHHHhccccc-chhhHHHHHHHHHHHHHH
Q 008450          186 MAVTVLVYIQDEIS-RSVGYGICSVAMFMAIII  217 (565)
Q Consensus       186 lg~~i~g~l~~~~g-w~~~f~i~~~~~~~~~~~  217 (565)
                      .||.+.|++-|..| |+...+......+...+.
T Consensus       348 ~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~  380 (395)
T COG2807         348 FGPWLFGFLHDATGSWSAPLVLLALATLLMLIF  380 (395)
T ss_pred             hhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            88999999998765 887777665554444333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.56  E-value=1.7e-06  Score=90.68  Aligned_cols=134  Identities=8%  Similarity=-0.007  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  111 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  111 (565)
                      +......+.++.+.+|+++.+.+++.+...++..++.+++|+++||+ |||+++.++..+..+..+........+     
T Consensus       211 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~~~-----  284 (377)
T PRK11102        211 FSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWLVVSALLD-----  284 (377)
T ss_pred             HHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            33344455677778899999999999999999999999999999999 999999988876555433332221101     


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHH-HHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFI-SLGTLMAVTV  190 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~lg~~lg~~i  190 (565)
                                     ...+.+.++..+.+.+.+...+.....+.|..| ++      ++++.+...... .+|..+|+.+
T Consensus       285 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        285 ---------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             ---------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHHHHHHHHHHHHH
Confidence                           123444455555555566666666677777766 45      788887765543 4667777665


Q ss_pred             HHH
Q 008450          191 LVY  193 (565)
Q Consensus       191 ~g~  193 (565)
                      ++.
T Consensus       343 ~~~  345 (377)
T PRK11102        343 SLA  345 (377)
T ss_pred             Hhc
Confidence            543

>PRK09669 putative symporter YagG; Provisional

Probab=98.50  E-value=7.4e-07  Score=96.17  Aligned_cols=128  Identities=13%  Similarity=0.123  Sum_probs=96.0

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHH
Q 008450           51 ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMG  130 (565)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (565)
                      ...+.+.....+...++.+++++++||+ |+|+.+..+.+..+++.+...+.   +.                   .+.+
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~~  320 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIFFI---PP-------------------SNVW  320 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh---Cc-------------------chHH
Confidence            3344555666778888899999999999 99999998877666544433332   11                   2466


Q ss_pred             HHHHHHHHHHHhccccccchhhhhhccCCCCChH-hhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccch
Q 008450          131 VLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEK-EKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRS  201 (565)
Q Consensus       131 ~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~  201 (565)
                      .+++..++.|++.++..+...++++|..+.++.+ -++..|..++.+.....+|..+|+.++|++.+..||.
T Consensus       321 ~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        321 LIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            6788888999999999999999999999855422 1222456677888888999999999999988877763

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.47  E-value=3.1e-06  Score=74.48  Aligned_cols=132  Identities=22%  Similarity=0.296  Sum_probs=95.0

Q ss_pred             hhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHH
Q 008450          362 FVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQ  441 (565)
Q Consensus       362 ~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~  441 (565)
                      ..+..++..++.+++.|+..+|          +.+..+..+..++.......                   .+.+...+.
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~----------~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~   57 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRK----------PVLLVGLFIFVLSTAMFALS-------------------SNITVLIIA   57 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchh----------HHHHHHHHHHHHHHHHHHHh-------------------ccHHHHHHH
Confidence            3455566777777776665544          23555666666665554432                   244556677


Q ss_pred             HHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHH
Q 008450          442 FFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYG  521 (565)
Q Consensus       442 ~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~  521 (565)
                      .++.+++.....+..+.++.|..|++.|++.+++.+....+|..+++.+.+.+.+.      .+          +...|+
T Consensus        58 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~----------~~~~~~  121 (141)
T TIGR00880        58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF------LG----------WRAPFL  121 (141)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc------cc----------hHHHHH
Confidence            88899999988999999999999999999999999999999999999999887521      12          245667


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 008450          522 LLAILSIINLVIYLICA  538 (565)
Q Consensus       522 ~~a~l~lv~~~~~~~~~  538 (565)
                      +.+++.++..+..+...
T Consensus       122 ~~~~~~~~~~~~~~~~~  138 (141)
T TIGR00880       122 FLAILALAAFILLAFLL  138 (141)
T ss_pred             HHHHHHHHHHHHHhhcC
Confidence            77777777666655543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.43  E-value=2.9e-06  Score=91.13  Aligned_cols=180  Identities=12%  Similarity=0.086  Sum_probs=127.4

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      +.++.+++-......-...+-++-|++..++.+.+........++.+++.++.||+ |||+.++++.....+..+++...
T Consensus       277 v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~~~~~~~~~  355 (485)
T KOG0569|consen  277 VSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAVALLLMSIA  355 (485)
T ss_pred             HHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            44444554444444455556667899999999999999999999999999999999 99999999999999988887776


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccc-cccchhhhhhccCCCCChHhhhhhcceeehhhHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGG-LKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS  181 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (565)
                      ..+.+               ..+++-.+...++.++..++.+. ..|...-+.+|.+|++.      |..++++-.....
T Consensus       356 ~~l~~---------------~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~~~~~~w  414 (485)
T KOG0569|consen  356 LFLSN---------------SFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSVATAVNW  414 (485)
T ss_pred             HHHHH---------------HhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHHHHHHHH
Confidence            43322               01111122233444443333222 34788889999999999      9999999888888


Q ss_pred             HHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccc
Q 008450          182 LGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRY  225 (565)
Q Consensus       182 lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  225 (565)
                      +...+-......+.+..|- ..|.+..+.+++..+..++..|+.
T Consensus       415 ~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  415 LSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence            7777766677777777774 566666666666666666655544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.41  E-value=1.1e-05  Score=78.46  Aligned_cols=92  Identities=21%  Similarity=0.248  Sum_probs=70.3

Q ss_pred             HHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcc
Q 008450           40 TYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATH  119 (565)
Q Consensus        40 ~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  119 (565)
                      .|+-.++|+...|+|.+.-+-...+++...+.|-|+|+- |||+..+.-.+.++    ++.+..                
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYi----LsCiTK----------------  119 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYI----LSCITK----------------  119 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHH----HHHHhh----------------
Confidence            455567899999999999988889999999999999998 99997665444444    443332                


Q ss_pred             cccCCcchhHHHHHHHHHHHHHhccccccchhhh-hhcc
Q 008450          120 TCEQASGFQMGVLYIALYLIALGTGGLKSSVSGF-GTDQ  157 (565)
Q Consensus       120 ~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~-~~~~  157 (565)
                           +..++-.+.++|.+-|+.++..+.+..+. ++|+
T Consensus       120 -----hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEH  153 (454)
T KOG4332|consen  120 -----HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEH  153 (454)
T ss_pred             -----cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHh
Confidence                 22347779999999999999988777664 3444

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=1.5e-06  Score=89.12  Aligned_cols=147  Identities=21%  Similarity=0.205  Sum_probs=123.9

Q ss_pred             CcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcce
Q 008450          354 PAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPV  433 (565)
Q Consensus       354 ~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (565)
                      ..+++.+...+.-++..|+++.++++++.|.          .+.+|+.++..+.+++++.                   .
T Consensus       107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~i----------pm~~Gl~vmf~sTilFafg-------------------~  157 (464)
T KOG3764|consen  107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKI----------PMVAGLFVMFLSTILFAFG-------------------N  157 (464)
T ss_pred             chhHHHHHHHHHHHHhcccchhhHHHhcccc----------HHHHHHHHHHHHHHHHHHc-------------------c
Confidence            4556667777888888899888888777763          3899999999999999884                   4


Q ss_pred             eehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchh-hHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccc
Q 008450          434 SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGM-KTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNIN  512 (565)
Q Consensus       434 s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~-rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~  512 (565)
                      +++.++++-.+.|+|.+...+...+++.+.+|++. ||+++|+.....++|..+||.+++.++...+             
T Consensus       158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-------------  224 (464)
T KOG3764|consen  158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-------------  224 (464)
T ss_pred             hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-------------
Confidence            66688999999999999999999999999999886 6999999999999999999999999986543             


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 008450          513 RGRLDLFYGLLAILSIINLVIYLICAVWYKPKK  545 (565)
Q Consensus       513 ~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~  545 (565)
                         +...|.++++++++..++-+++.+.++...
T Consensus       225 ---k~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  225 ---KSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             ---CcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence               345699999999999988888776654443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.38  E-value=4.8e-06  Score=88.51  Aligned_cols=161  Identities=11%  Similarity=0.067  Sum_probs=120.8

Q ss_pred             HHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 008450           34 IAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC  113 (565)
Q Consensus        34 ~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  113 (565)
                      ...+...|+++.-|.+....+.+.+.-.+.-...-.+.+++..|+ |.|+++.++.+..++=..+.+...+ |.      
T Consensus       226 ~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~a~~~~-~~------  297 (400)
T PF03825_consen  226 YYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLYAYFSD-PW------  297 (400)
T ss_pred             HHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhcC-Cc------
Confidence            345567787644447777778777777778888888999999999 9999999999999988777777622 11      


Q ss_pred             CCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHH-HHHHHHHHHHHH
Q 008450          114 KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFI-SLGTLMAVTVLV  192 (565)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~lg~~lg~~i~g  192 (565)
                                  .........+..+.|+..|.+..+...++.+..|++.      |+++.+++.... .+|.++|..++|
T Consensus       298 ------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG  359 (400)
T PF03825_consen  298 ------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGG  359 (400)
T ss_pred             ------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                        0012223444567999999999999999999999999      999999988875 699999999999


Q ss_pred             Hhcccccchhh------HHHHHHHHHHHHHHHHh
Q 008450          193 YIQDEISRSVG------YGICSVAMFMAIIIFLA  220 (565)
Q Consensus       193 ~l~~~~gw~~~------f~i~~~~~~~~~~~~~~  220 (565)
                      ++.+.+|-+..      +.+.++..++..+++..
T Consensus       360 ~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  360 WLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            99998775543      34444444444444333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.36  E-value=2e-05  Score=84.36  Aligned_cols=140  Identities=11%  Similarity=0.155  Sum_probs=103.0

Q ss_pred             hhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeeh
Q 008450          357 SLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVF  436 (565)
Q Consensus       357 ~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  436 (565)
                      +...+..+...+..++.+.+.|++.||          +.+..+.++..++.+...+                   ..+..
T Consensus        55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr----------~~l~~~~~~~~~~~~~~~~-------------------a~~~~  105 (413)
T PRK15403         55 ASVSLYLAGGMALQWLLGPLSDRIGRR----------PVLITGALIFTLACAATLF-------------------TTSMT  105 (413)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHcCch----------HHHHHHHHHHHHHHHHHHH-------------------cCCHH
Confidence            344445566667777888888877766          2366677777776665554                   33566


Q ss_pred             hhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchh
Q 008450          437 LLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRL  516 (565)
Q Consensus       437 ~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~  516 (565)
                      .+++.-++.|++++...+..+.++.|..|++.+++.+++.+....+|..+|+.+++.+...      .+|          
T Consensus       106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~------~gw----------  169 (413)
T PRK15403        106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF------VHW----------  169 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCH----------
Confidence            7778889999998877777788888999999999999999999999999999998876531      233          


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhc
Q 008450          517 DLFYGLLAILSIINLVIYLICAVWY  541 (565)
Q Consensus       517 ~~~f~~~a~l~lv~~~~~~~~~~~~  541 (565)
                      .+.|++.+++.++..+..+...++.
T Consensus       170 ~~~f~~~~~~~~i~~~~~~~~lp~~  194 (413)
T PRK15403        170 KVLFAIIAVMGLIAFVGLLLAMPET  194 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            5678888888777766555545554

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.34  E-value=7.2e-06  Score=81.22  Aligned_cols=141  Identities=23%  Similarity=0.275  Sum_probs=111.8

Q ss_pred             hhhcCCCCc--hhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcc
Q 008450           42 LVGTMHLPS--ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATH  119 (565)
Q Consensus        42 l~~~l~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  119 (565)
                      ...+++.+.  .+.++..+.+.+...+..++.|+++||+ |||+.+..+.....++.+++++..+               
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------------   91 (338)
T COG0477          28 LLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------------   91 (338)
T ss_pred             HHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------------
Confidence            344555555  4789999999999999999999999999 9998888888776666566665522               


Q ss_pred             cccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCC-CChHhhhhhcceeehhhH-HHHHHHHHHHHHHHHhccc
Q 008450          120 TCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFFSRFFF-FISLGTLMAVTVLVYIQDE  197 (565)
Q Consensus       120 ~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~lg~~lg~~i~g~l~~~  197 (565)
                             .....+.+.|+.+|++.+...+...+++.|.+|+ ++      |+...+.... ...+|..+++.+++.+...
T Consensus        92 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          92 -------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             -------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   2378899999999999999999999999999988 44      8888888888 5788889998887776654


Q ss_pred             --ccchhhHHHHHHHH
Q 008450          198 --ISRSVGYGICSVAM  211 (565)
Q Consensus       198 --~gw~~~f~i~~~~~  211 (565)
                        .+|++.|.+.....
T Consensus       159 ~~~~~~~~~~~~~~~~  174 (338)
T COG0477         159 LLWGWRAAFLLAALLG  174 (338)
T ss_pred             HhcchHHHHHHHHHHH
Confidence              57888666655443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.33  E-value=0.00079  Score=70.84  Aligned_cols=133  Identities=14%  Similarity=0.120  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHH
Q 008450           54 ANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLY  133 (565)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (565)
                      +.+..+-.+-+.+.-+.+-|..+|+ --+.=+.++.++..+|.++.+++.+                        .+.=+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~~~------------------------v~~~l  116 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFSPS------------------------VWVRL  116 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeeccc------------------------hhHHH
Confidence            4466666677888888888999987 5454455566778888888888732                        56677


Q ss_pred             HHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcc-cccchhhHHHHHHHHH
Q 008450          134 IALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD-EISRSVGYGICSVAMF  212 (565)
Q Consensus       134 i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~-~~gw~~~f~i~~~~~~  212 (565)
                      ++-.+.+++.|.-..+..++.. .+++..          .+.+..+...++++|...--.+.. ..+.|..+.+..++.+
T Consensus       117 ~Gv~las~ssg~GE~tfL~lt~-~y~~~~----------l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~  185 (402)
T PF02487_consen  117 LGVVLASLSSGLGEVTFLSLTH-FYGKSS----------LSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPA  185 (402)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHH-hcCccc----------cccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            8888899999998888888755 454332          455555666667777654444444 2334666666555544


Q ss_pred             HHHHHHHhcc
Q 008450          213 MAIIIFLAGT  222 (565)
Q Consensus       213 ~~~~~~~~~~  222 (565)
                      +-++.+++..
T Consensus       186 ~~~~~~f~~L  195 (402)
T PF02487_consen  186 IFLLSYFFLL  195 (402)
T ss_pred             HHHHHHHHhh
Confidence            4444444443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.33  E-value=1.2e-05  Score=85.22  Aligned_cols=137  Identities=12%  Similarity=0.006  Sum_probs=98.4

Q ss_pred             HHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008450           37 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  116 (565)
Q Consensus        37 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (565)
                      ..+.|+++.+|.+..+.+++......+..++.++.+++.||+ +++...  ......++.+.........          
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~----------  295 (394)
T PRK11652        229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG----------  295 (394)
T ss_pred             hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc----------
Confidence            345677777999999999998888888999999999999998 743332  2222222222221110000          


Q ss_pred             CcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcc
Q 008450          117 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  196 (565)
Q Consensus       117 ~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~  196 (565)
                               ..+.+.+.++.++.++|.+...|....+..|.+|+ +      ++...++.....++|..+++.+++++..
T Consensus       296 ---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        296 ---------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             ---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence                     01245677778889999999999999999998874 4      7888899998899999999999998876


Q ss_pred             cccchh
Q 008450          197 EISRSV  202 (565)
Q Consensus       197 ~~gw~~  202 (565)
                      ...+..
T Consensus       360 ~~~~~~  365 (394)
T PRK11652        360 TGQFSL  365 (394)
T ss_pred             CchHHH
Confidence            544433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.31  E-value=6.9e-06  Score=87.80  Aligned_cols=154  Identities=12%  Similarity=0.057  Sum_probs=110.8

Q ss_pred             HHHHHHhHHHHHHHHHHhhhc-CCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 008450           25 LCERLSTMGIAVNLVTYLVGT-MHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVT  103 (565)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~-l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~  103 (565)
                      ++.-....+..++++.|+.+. .+.+....+...+.+.....++++++|+++||+ ++||++.++.+...+..++..+.+
T Consensus       242 f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll~~~~~  320 (410)
T TIGR00885       242 FFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLGSIFAG  320 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHcC
Confidence            333333335556678887643 255555556677777888999999999999999 999999888888777777766641


Q ss_pred             hhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHH
Q 008450          104 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLG  183 (565)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg  183 (565)
                      .                        . ...++..+.|+..+..+|+..++..+..+++.      . .+.+...+ ..+|
T Consensus       321 ~------------------------~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~-~~s~~l~~-~~~G  367 (410)
T TIGR00885       321 G------------------------H-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------K-YGAAGLVM-AIIG  367 (410)
T ss_pred             C------------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------h-hhHHHHHH-HHhc
Confidence            1                        1 23566777888999999999999999987654      2 22333333 3499


Q ss_pred             HHHHHHHHHHhcccc------cchhhHHHHHHHHH
Q 008450          184 TLMAVTVLVYIQDEI------SRSVGYGICSVAMF  212 (565)
Q Consensus       184 ~~lg~~i~g~l~~~~------gw~~~f~i~~~~~~  212 (565)
                      .++.|.+.|++.|..      +.+..|+++.++.+
T Consensus       368 ga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       368 GGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             cchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            999999999999954      58888887765544

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.30  E-value=0.00021  Score=75.22  Aligned_cols=155  Identities=15%  Similarity=0.066  Sum_probs=108.9

Q ss_pred             HHHHHHhhhc-CCCCchhhhh-HHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 008450           36 VNLVTYLVGT-MHLPSATSAN-IVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC  113 (565)
Q Consensus        36 ~~l~~yl~~~-l~~s~~~~~~-~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  113 (565)
                      +++.+|+.+. .|++..|... +.-...-.....-++...+.|.. |.|++++++.+...+...++.+.++         
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~s---------   93 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGTS---------   93 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHCc---------
Confidence            4578899886 8999988763 34445556667778889999998 9999999999988888888888744         


Q ss_pred             CCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHH
Q 008450          114 KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVY  193 (565)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~  193 (565)
                                     ...+-+.-+..|++.+.. .+..+++=...|+++      =-++.+......-+|-.++.++|-.
T Consensus        94 ---------------v~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQl  151 (412)
T PF01770_consen   94 ---------------VLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQL  151 (412)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           556777888888887764 555566666666655      3344555666666676776665554


Q ss_pred             hcc--cccchhhHHHHHHHHHHHHHHHHhcc
Q 008450          194 IQD--EISRSVGYGICSVAMFMAIIIFLAGT  222 (565)
Q Consensus       194 l~~--~~gw~~~f~i~~~~~~~~~~~~~~~~  222 (565)
                      +..  ..++...+++......+++++.++++
T Consensus       152 lvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  152 LVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            443  44577777777666666666655543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.29  E-value=2.2e-05  Score=81.85  Aligned_cols=112  Identities=17%  Similarity=0.149  Sum_probs=84.4

Q ss_pred             cchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCccee
Q 008450          355 AGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVS  434 (565)
Q Consensus       355 ~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  434 (565)
                      .++......+...+..++.+++.|++.+|          +.+.++.++..++.+...+..                  .+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----------~~~~~~~~~~~i~~~~~~~~~------------------~~   90 (366)
T TIGR00886        39 LGNLVAVPVLAGAVLRIILGFLVDKFGPR----------YTTTLSLLLLAIPCLWAGLAV------------------QS   90 (366)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHhCch----------HHHHHHHHHHHHHHHHHHHHh------------------hh
Confidence            45566667777788888889888877766          236778888888877766531                  14


Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 008450          435 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK  495 (565)
Q Consensus       435 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~  495 (565)
                      ++.+++..++.|++... .+....++.+..|++.|++.+++......+|..+++.+.+.+.
T Consensus        91 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886        91 YSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             HHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            55566677888887554 4566788999999999999999999888888888888776654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.27  E-value=3.7e-06  Score=91.60  Aligned_cols=142  Identities=14%  Similarity=0.053  Sum_probs=102.8

Q ss_pred             HHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 008450           38 LVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETA  117 (565)
Q Consensus        38 l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  117 (565)
                      .+.|++..++ +....+++.+...++..++.++.++++||+ |+|+++.++..+.+++.+...+..-.+           
T Consensus       254 ~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~~~~-----------  320 (473)
T PRK10429        254 AIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVLSCGVLLLMGLAA-----------  320 (473)
T ss_pred             eeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHhccC-----------
Confidence            3333333333 455666777766788899999999999999 999999988887776665554321001           


Q ss_pred             cccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChH-hhhhhcceeehhhHHHHHHHHHHHHHHHHhcc
Q 008450          118 THTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEK-EKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  196 (565)
Q Consensus       118 ~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~  196 (565)
                              ..+.+.+++.-++.|++.+...+...++++|..+..+.+ -++.-|..++...+...+|..+|+.+.|++.+
T Consensus       321 --------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        321 --------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             --------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    123566677778889999999999999999998865422 22234557888888889999999999998877


Q ss_pred             cccc
Q 008450          197 EISR  200 (565)
Q Consensus       197 ~~gw  200 (565)
                      ..||
T Consensus       393 ~~Gy  396 (473)
T PRK10429        393 LIGY  396 (473)
T ss_pred             HcCC
Confidence            6665

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.23  E-value=4.9e-06  Score=89.89  Aligned_cols=170  Identities=15%  Similarity=0.073  Sum_probs=115.4

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcccc-------c-hhHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLG-------R-YKTIAIFAAVQTL   94 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-------r-r~~~~~~~~~~~~   94 (565)
                      ..+|+..+++-+..++|.|+.+.+|++..+.|++.+.-.+.+.+...++|+++||...       + |-.-.++....++
T Consensus       266 ~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai  345 (466)
T KOG2532|consen  266 SAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAV  345 (466)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999822       1 1111223333333


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceee
Q 008450           95 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  174 (565)
Q Consensus        95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (565)
                      ..+.+++.   +.      .         ........+.++..+.|+..++    ...-..|+.| +.      -+..++
T Consensus       346 ~l~~l~~~---~~------~---------~~~~a~~~l~~~~~~~g~~~~G----f~~~~~~~ap-q~------a~~l~g  396 (466)
T KOG2532|consen  346 FLLVLAFT---SD------E---------HRLLAVILLTIAIGLSGFNISG----FYKNHQDIAP-QH------AGFVMG  396 (466)
T ss_pred             HHHeeeec---CC------C---------cchHHHHHHHHHHHHcccchhh----hHhhhhhccc-hH------HHHHHH
Confidence            33333333   11      0         0001122222222223333333    2233333333 33      688899


Q ss_pred             hhhHHHHHHHHHHHHHHHHhccc---ccchhhHHHHHHHHHHHHHHHHhc
Q 008450          175 RFFFFISLGTLMAVTVLVYIQDE---ISRSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       175 ~~~~~~~lg~~lg~~i~g~l~~~---~gw~~~f~i~~~~~~~~~~~~~~~  221 (565)
                      +.+...++..+++|.+.|.+..+   ..|+.+|.+.+++.++.-+++.+.
T Consensus       397 ~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  397 IINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            99999999999999999998842   369999999988877766555444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.21  E-value=1.8e-05  Score=80.56  Aligned_cols=166  Identities=14%  Similarity=0.082  Sum_probs=111.5

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhc--CCCC----chhhhh------------H-HHHHHHHHHHHHhhhHHHhhccccchh
Q 008450           23 IELCERLSTMGIAVNLVTYLVGT--MHLP----SATSAN------------I-VTDFMGTSFLLCLLGGFLADTFLGRYK   83 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~--l~~s----~~~~~~------------~-~~~~~~~~~~~~~~~G~laDr~~Grr~   83 (565)
                      +-|-+++++||++-......+..  .|..    +.+.-.            . ...-.+.-+-+.++.+++.||+ |||+
T Consensus       334 iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverl-GRKk  412 (528)
T KOG0253|consen  334 IWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERL-GRKK  412 (528)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHh-cchh
Confidence            56677889999886655544432  1111    111111            0 1122455667889999999998 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCh
Q 008450           84 TIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDE  163 (565)
Q Consensus        84 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~  163 (565)
                      ++..+++++.+..++.....+ ++                   ....+++++|+..    ++.+.+++.|-.|++|.+. 
T Consensus       413 TMal~l~~f~iflfll~~c~~-rn-------------------~~tvllf~arafi----sg~fqvaYvYtPEVyPTav-  467 (528)
T KOG0253|consen  413 TMALSLILFGIFLFLLTTCKT-RN-------------------AYTVLLFTARAFI----SGAFQVAYVYTPEVYPTAV-  467 (528)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC-cc-------------------hhHHHHHHHHHHH----hchheEEEEecCcccchhh-
Confidence            999999999988777655422 11                   1245566777665    4555678899999999999 


Q ss_pred             HhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhc
Q 008450          164 KEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       164 ~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~  221 (565)
                           |+...|....+..+|+++.|.+. ...+ .+=..+..+.+.+++++.+...++
T Consensus       468 -----RatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIavcff  518 (528)
T KOG0253|consen  468 -----RATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAVCFF  518 (528)
T ss_pred             -----hhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHheee
Confidence                 99999999999999999999888 3333 332334445555555555554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.17  E-value=2.2e-05  Score=85.57  Aligned_cols=170  Identities=8%  Similarity=-0.036  Sum_probs=120.4

Q ss_pred             HHHHHHHHHhhhcCCCCch----hhhhHHHHHHHHHHHHHhhhH----HHhhccccchhHH--HHHHHHHHHHHHHHHHH
Q 008450           33 GIAVNLVTYLVGTMHLPSA----TSANIVTDFMGTSFLLCLLGG----FLADTFLGRYKTI--AIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~----~~~~~~~~~~~~~~~~~~~~G----~laDr~~Grr~~~--~~~~~~~~~~~~~~a~~  102 (565)
                      -..+.++.|..++.+.+..    ..+++.+.-.+...+..++..    ++.||..+.+...  .+|+++.+++.+.++++
T Consensus       290 Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~  369 (475)
T TIGR00924       290 QMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAAS  369 (475)
T ss_pred             HhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3344466776665554322    256666666666666666644    5666521344444  67888888887777664


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      ...               -++....+++.+.+..++.++|.....|...+++.+..|++.      |++.++.+.....+
T Consensus       370 ~~~---------------~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~~~g~~~l~~~~  428 (475)
T TIGR00924       370 IWF---------------ADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQMLGMWFLAQAM  428 (475)
T ss_pred             Hhh---------------cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHH
Confidence            211               011123468889999999999999999999999999999999      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      |..+++.+.....+..+|...|...++..++..++++...|
T Consensus       429 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       429 GSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888887777678888887777666655555554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.16  E-value=6e-05  Score=78.50  Aligned_cols=164  Identities=15%  Similarity=0.223  Sum_probs=133.3

Q ss_pred             HHhHHHHHHHHHHhhh---------cCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHH
Q 008450           29 LSTMGIAVNLVTYLVG---------TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGML   99 (565)
Q Consensus        29 ~~~~~~~~~l~~yl~~---------~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~   99 (565)
                      +..|-....+..++++         .+|++..|...++.....+..++-...|++..|..+.+++-.+++...+++..+.
T Consensus       213 f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li  292 (403)
T PF03209_consen  213 FFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI  292 (403)
T ss_pred             HHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence            3445555555555554         4899999999999999999999999999998866589999889999888888887


Q ss_pred             HHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHH
Q 008450          100 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  179 (565)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (565)
                      .++....                     +.+.+..+.++.|+|.|.+.....+.+.|..++++      -|.+++.....
T Consensus       293 i~a~~~~---------------------~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaa  345 (403)
T PF03209_consen  293 ILAGPLG---------------------SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAA  345 (403)
T ss_pred             HHHHhcc---------------------cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHH
Confidence            7764322                     47889999999999999999999999999999888      89999999999


Q ss_pred             HHHHHHHHHHHHHHhcc----------cccchhhHHHHHHHHHHHHHHHH
Q 008450          180 ISLGTLMAVTVLVYIQD----------EISRSVGYGICSVAMFMAIIIFL  219 (565)
Q Consensus       180 ~~lg~~lg~~i~g~l~~----------~~gw~~~f~i~~~~~~~~~~~~~  219 (565)
                      ..++..+|..++|.+.|          ..+|..+|.+-++..+.++.+..
T Consensus       346 QA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  346 QAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888888887654          23577788877776666655543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.14  E-value=2.4e-05  Score=88.18  Aligned_cols=134  Identities=14%  Similarity=0.141  Sum_probs=93.3

Q ss_pred             CcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH--hhh----------h
Q 008450          354 PAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKR--LSV----------A  421 (565)
Q Consensus       354 ~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~--~~~----------~  421 (565)
                      ..+++.+...+..++..++++.+.++..||          +.+.+|.++++++.++.++.....  +..          +
T Consensus        69 ~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~----------~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        69 SSGLINGSYEIGNLLLIIFVSYFGTKLHRP----------IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             cceeeeehhhHHHHHHHHHHHHhhcccCcc----------eEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            345566667777777777777775554443          236778888888887776543110  000          0


Q ss_pred             ------hhcCCC-----C-------CCc--ceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHH
Q 008450          422 ------RAVGLT-----T-------ATL--PVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLS  481 (565)
Q Consensus       422 ------~~~~~~-----~-------~~~--~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~  481 (565)
                            +..+.+     +       ...  ...+..++++.++.|+|.+..++...+++.|.+|++.|+.+.|+++....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence                  000000     0       000  12355667899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHhhhhhhc
Q 008450          482 LGFFVSSFLVAVVKKV  497 (565)
Q Consensus       482 lg~~ig~~l~~~l~~~  497 (565)
                      +|..+|+.+++.+...
T Consensus       219 iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQI  234 (633)
T ss_pred             hhhHHHHHHHHHHHhc
Confidence            9999999999987643

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.13  E-value=6.1e-05  Score=81.60  Aligned_cols=178  Identities=12%  Similarity=0.080  Sum_probs=109.0

Q ss_pred             cchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCccee
Q 008450          355 AGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVS  434 (565)
Q Consensus       355 ~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  434 (565)
                      .+.+.....+..++..|+.+.+.|+-..|+.+|+     ..+..|.+...+++.++++.........+  ..+++.....
T Consensus        41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr-----p~il~g~~~~~~~l~ll~~~~~~~~~~~~--~~~~~~~~~~  113 (477)
T TIGR01301        41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR-----PFIAAGAALVAFAVILIGFAADIGHLFGD--NLDKKTKPRA  113 (477)
T ss_pred             HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH-----HHHHHHHHHHHHHHHHHHhCchhhhhccc--cccccchhHH
Confidence            3455666778888899999999987655554321     22444666666776666553211000000  0000000111


Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhh--HHHHHHHHHHHHHHHHHhhHHhhhhh--hcccCCCCCCccccc
Q 008450          435 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK--TMSTGLFLTTLSLGFFVSSFLVAVVK--KVTGSKGGGGWLADN  510 (565)
Q Consensus       435 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r--g~~~gl~~~~~~lg~~ig~~l~~~l~--~~~~~~~~~~w~~~~  510 (565)
                      .+..++.+.+..++.....++..+++.|..|++.|  +.+.++.+....+|+.+|+.+.++..  ...+-.+. .  .+.
T Consensus       114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~-~--~~~  190 (477)
T TIGR01301       114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKT-E--ACG  190 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccc-c--ccc
Confidence            23344555566677888888889999999998866  57899999999999999999887641  11000000 0  011


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 008450          511 INRGRLDLFYGLLAILSIINLVIYLICAVWYK  542 (565)
Q Consensus       511 ~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~  542 (565)
                      ....++...|++.+++.+++.++..+..+|+.
T Consensus       191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       191 VSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            11124677888888888888888888877754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.12  E-value=0.00014  Score=71.91  Aligned_cols=131  Identities=15%  Similarity=0.174  Sum_probs=100.2

Q ss_pred             HHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008450           36 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE  115 (565)
Q Consensus        36 ~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  115 (565)
                      +.-.+.+++.+|+|..|.+.+-.+-.++..+ .++.|.+.|++ |.+.++.+|.+...+|..++..+-+           
T Consensus        22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~-----------   88 (250)
T PF06813_consen   22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVS-----------   88 (250)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            3445667889999999999999999999886 58899999999 9999999999999999888766522           


Q ss_pred             CCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450          116 TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       116 ~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                            +.......+.+.+..++.|.|.+.+..+....-.+.||+ +      ||++.++.-....+++.+=..+-.
T Consensus        89 ------~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~  152 (250)
T PF06813_consen   89 ------GRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYS  152 (250)
T ss_pred             ------CccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHH
Confidence                  011113467777777888887776666666666688875 6      999999988888776555433333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.11  E-value=4.4e-05  Score=83.52  Aligned_cols=134  Identities=16%  Similarity=0.253  Sum_probs=94.2

Q ss_pred             hhhhHHHHHHHHHhhhhhhh-ccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhh
Q 008450          360 VFFVSAILITLAVYDRLIMP-LWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLL  438 (565)
Q Consensus       360 ~~~~~~~li~~~l~~~l~~~-l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  438 (565)
                      ........+..++.+++.|+ +++|          +.+.+|.++..++...+++.                  ......+
T Consensus        57 ~~~~~~~~~~~~~~G~laDr~~G~r----------~~~~~g~~~~~~g~~~~~~~------------------~~~~~ll  108 (489)
T PRK10207         57 GAFAALVYGLISIGGYVGDHLLGTK----------RTIVLGAIVLAIGYFMTGMS------------------LLKPDLI  108 (489)
T ss_pred             HHHHHHHHHHHhhHHHhhhhccchH----------HHHHHHHHHHHHHHHHHHHh------------------ccchhHH
Confidence            33344445555677788776 5555          44788999998888877653                  1112234


Q ss_pred             HHHHHHHHHHHHHhhhhhHhhhhccCCch--hhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchh
Q 008450          439 IPQFFLVGAGEAFIYTGQLDFFITKSPKG--MKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRL  516 (565)
Q Consensus       439 i~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~  516 (565)
                      .+..++.++|.++..|...+++.|.+|++  .|+.+.+++.+..++|.++|+.+.+++...      -+|          
T Consensus       109 ~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~------~gw----------  172 (489)
T PRK10207        109 FIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK------FGY----------  172 (489)
T ss_pred             HHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh------hCh----------
Confidence            46788889999999999999999999887  457789999999999999999999988532      123          


Q ss_pred             hHHHHHHHHHHHHHHHHHhhh
Q 008450          517 DLFYGLLAILSIINLVIYLIC  537 (565)
Q Consensus       517 ~~~f~~~a~l~lv~~~~~~~~  537 (565)
                      .+.|++.++..+++.+.++..
T Consensus       173 ~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        173 SVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            456666555444444444443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.08  E-value=7.7e-05  Score=81.90  Aligned_cols=127  Identities=15%  Similarity=0.225  Sum_probs=88.2

Q ss_pred             HHHHhhhhhhhc-cccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHH
Q 008450          369 TLAVYDRLIMPL-WKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGA  447 (565)
Q Consensus       369 ~~~l~~~l~~~l-~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~  447 (565)
                      ..++.+++.|++ .+|          +.+.+|.++..++...+.+.                  ......+.+..++.++
T Consensus        73 ~~~~~G~LaDr~~G~r----------~~~~~g~~~~~ig~~l~~~~------------------~~~~~~l~~~~~l~gi  124 (500)
T PRK09584         73 LVAIGGWLGDKVLGTK----------RVIMLGAIVLAIGYALVAWS------------------GHDAGIVYMGMATIAV  124 (500)
T ss_pred             HHHHHHHHHHhccchH----------HHHHHHHHHHHHHHHHHHHh------------------cccHHHHHHHHHHHHH
Confidence            335667776763 544          34777888888777666542                  1223445567788889


Q ss_pred             HHHHhhhhhHhhhhccCCchh--hHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHH
Q 008450          448 GEAFIYTGQLDFFITKSPKGM--KTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAI  525 (565)
Q Consensus       448 g~~~~~~~~~~~~~~~~P~~~--rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~  525 (565)
                      |.++..+...+++.+.+|++.  |+.+.+++++..++|..+|+.+.+++.+.      .+|          .+.|.+.++
T Consensus       125 g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~------~g~----------~~~F~i~~i  188 (500)
T PRK09584        125 GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK------YGW----------SVAFALSVV  188 (500)
T ss_pred             hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh------hCH----------HHHHHHHHH
Confidence            998888888899999998653  45678888999999999999999987532      123          566777776


Q ss_pred             HHHHHHHHHhhhhh
Q 008450          526 LSIINLVIYLICAV  539 (565)
Q Consensus       526 l~lv~~~~~~~~~~  539 (565)
                      ..+++.+.++...+
T Consensus       189 ~~~i~~i~~~~~~~  202 (500)
T PRK09584        189 GMLITVVNFAFCQR  202 (500)
T ss_pred             HHHHHHHHHHHhHH
Confidence            66666655555443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.07  E-value=2.6e-05  Score=83.28  Aligned_cols=154  Identities=18%  Similarity=0.134  Sum_probs=119.3

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVT  103 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~  103 (565)
                      .+|.-.++.-..+.+..|.+..+|.+..+..+.......+..++.++..+|.+|+ |+|+++.++.++.+++.++..+..
T Consensus       245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHHHHHHhhc
Confidence            4444444444445566777777888888888888888999999999999999999 999999999999999999998873


Q ss_pred             hhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHh-hhhhcceeehhhHHHHH
Q 008450          104 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKE-KTQMAYFFSRFFFFISL  182 (565)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~l  182 (565)
                         .                   .+..++++...+.++|.+...+...++++|..+..+-++ +|+-|-.++.+....=+
T Consensus       324 ---~-------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~  381 (467)
T COG2211         324 ---A-------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKL  381 (467)
T ss_pred             ---C-------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHH
Confidence               1                   358889999999999999999999999999988665322 22234555555555667


Q ss_pred             HHHHHHHHHHHhcccccc
Q 008450          183 GTLMAVTVLVYIQDEISR  200 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw  200 (565)
                      |.+++..+.|++....||
T Consensus       382 g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         382 GLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence            888888777777655443

>PRK11462 putative transporter; Provisional

Probab=98.05  E-value=6.3e-05  Score=81.71  Aligned_cols=151  Identities=10%  Similarity=0.047  Sum_probs=95.7

Q ss_pred             HHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008450           26 CERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKL  105 (565)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~  105 (565)
                      +..+...........|.+..+|. ....+++.+.+.++.+++.+++++++||+ |+|+++..+..+..+..++..+.   
T Consensus       239 ~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~---  313 (460)
T PRK11462        239 FNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFV---  313 (460)
T ss_pred             HHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh---
Confidence            33333333334445555555554 33456677788889999999999999999 99888775555444433333332   


Q ss_pred             cccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhh-cceeehhhHHHHHHH
Q 008450          106 RQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM-AYFFSRFFFFISLGT  184 (565)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~lg~  184 (565)
                      |.                   .+...+++..++.|++.++..+...++++|..+..+-++.++| |..++.......+|.
T Consensus       314 ~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~  374 (460)
T PRK11462        314 PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGL  374 (460)
T ss_pred             ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHH
Confidence            11                   1122344555667888888777778899998875532222122 344566667788999


Q ss_pred             HHHHHHHHHhcccccc
Q 008450          185 LMAVTVLVYIQDEISR  200 (565)
Q Consensus       185 ~lg~~i~g~l~~~~gw  200 (565)
                      .+|+.++|++.+..||
T Consensus       375 alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        375 AFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999988887665555

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.02  E-value=9.6e-05  Score=80.43  Aligned_cols=137  Identities=15%  Similarity=0.181  Sum_probs=91.5

Q ss_pred             hhhhhhHHHHHHHHHhhhhhhhc-cccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeeh
Q 008450          358 LTVFFVSAILITLAVYDRLIMPL-WKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVF  436 (565)
Q Consensus       358 ~~~~~~~~~li~~~l~~~l~~~l-~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  436 (565)
                      +.........+...+.+++.||+ ++|          +.+.+|.++..++..++...                  ..+..
T Consensus        50 i~~~~~~~~~l~~ligG~LaDRilGrr----------r~iliG~il~~lg~lll~~~------------------~~~~~  101 (493)
T PRK15462         50 LFSAYCSLVYVTPILGGFLADKVLGNR----------MAVMLGALLMAIGHVVLGAS------------------EIHPS  101 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCcH----------HHHHHHHHHHHHHHHHHHHh------------------hcchh
Confidence            33334445455666778887776 544          34678888888887655431                  11112


Q ss_pred             hhHHHHHHHHHHHHHhhhhhHhhhhccCCch--hhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccc
Q 008450          437 LLIPQFFLVGAGEAFIYTGQLDFFITKSPKG--MKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRG  514 (565)
Q Consensus       437 ~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~  514 (565)
                      .+.+...+..+|.++..+...+++.|.+|++  .|.++.++++...++|+.++|.+.+.+.+.      .+|        
T Consensus       102 ~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~------~Gw--------  167 (493)
T PRK15462        102 FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE------YSW--------  167 (493)
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh------hCh--------
Confidence            2344445555666666677788999999876  799999999999999999999999987532      123        


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhh
Q 008450          515 RLDLFYGLLAILSIINLVIYLICA  538 (565)
Q Consensus       515 ~~~~~f~~~a~l~lv~~~~~~~~~  538 (565)
                        ...|.+.++..+++++.++...
T Consensus       168 --~~~F~iaaigm~l~li~~~~~~  189 (493)
T PRK15462        168 --AMGFGLAAVGMIAGLVIFLCGN  189 (493)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhh
Confidence              5567776666666666655443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.99  E-value=4.7e-05  Score=80.39  Aligned_cols=155  Identities=15%  Similarity=0.140  Sum_probs=124.0

Q ss_pred             HHHHhhhcC---CCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008450           38 LVTYLVGTM---HLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK  114 (565)
Q Consensus        38 l~~yl~~~l---~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  114 (565)
                      .+.|.+.-+   +.+....|.+.+.-.+.-++.-.+..++.+|+ |.|+.++++..++.+=-++++++++          
T Consensus       243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i~~iRi~~~~~~~~----------  311 (412)
T PF01306_consen  243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVIMAIRIIGSGFATN----------  311 (412)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT--S----------
T ss_pred             HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHHHHHHHHHhhhcc----------
Confidence            455555432   23345577788888888888899999999999 9999999999999998888888843          


Q ss_pred             CCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeeh-hhHHHHHHHHHHHHHHHH
Q 008450          115 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR-FFFFISLGTLMAVTVLVY  193 (565)
Q Consensus       115 ~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~lg~~i~g~  193 (565)
                                    ++.+.+.+.+.|+-.+....+..-|+++.+|++-      ..+...+ ++....+|.++.+.+.|+
T Consensus       312 --------------~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~~~~~~~~~~~i~s~~~G~  371 (412)
T PF01306_consen  312 --------------PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVGFQFAKQIGIIILSPLAGY  371 (412)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence                          7889999999999999999999999999999887      6777777 456778999999999999


Q ss_pred             hcccccchhhHHHHHHHHHHHHHHHHhccc
Q 008450          194 IQDEISRSVGYGICSVAMFMAIIIFLAGTK  223 (565)
Q Consensus       194 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  223 (565)
                      +.|+.|++..|++.+.+.+...++..+..+
T Consensus       372 lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  372 LYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             hHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            999999999998887776666555555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00788 fbt folate/biopterin transporter

Probab=97.97  E-value=2e-05  Score=85.75  Aligned_cols=144  Identities=8%  Similarity=-0.156  Sum_probs=113.5

Q ss_pred             hcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccC
Q 008450           44 GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQ  123 (565)
Q Consensus        44 ~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  123 (565)
                      +.+|+++.+.|.+.....++..++....+++.+|+ +.|+++.++.++.+++.+...+..+.-+              ..
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~--------------~~  345 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWN--------------LA  345 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccc--------------cc
Confidence            35899999999999999999999999999999998 9999999999988887766532210000              00


Q ss_pred             CcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccccc----
Q 008450          124 ASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEIS----  199 (565)
Q Consensus       124 ~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~g----  199 (565)
                      ....+...+...-++.+++.+........++.+..|++.      ++..++++....++|..+++.+++++.+..|    
T Consensus       346 ~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~  419 (468)
T TIGR00788       346 FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCD  419 (468)
T ss_pred             cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            000112345556677888888888889999999999999      9999999999999999999999999998877    


Q ss_pred             -chhhHHHHH
Q 008450          200 -RSVGYGICS  208 (565)
Q Consensus       200 -w~~~f~i~~  208 (565)
                       ++..+....
T Consensus       420 ~~~~~~~~i~  429 (468)
T TIGR00788       420 NSNNLWLLIL  429 (468)
T ss_pred             cccchHHHHH
Confidence             665555433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.97  E-value=1.4e-05  Score=84.99  Aligned_cols=151  Identities=7%  Similarity=0.016  Sum_probs=128.9

Q ss_pred             hhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q 008450           43 VGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCE  122 (565)
Q Consensus        43 ~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  122 (565)
                      .++++-.+.-.|........+-.+.-++.++|..++ |+-+++.+++....+=.+..++.                    
T Consensus       398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L--------------------  456 (618)
T KOG3762|consen  398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYL--------------------  456 (618)
T ss_pred             HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHh--------------------
Confidence            356776666667666667777888889999999999 99999999999998888888777                    


Q ss_pred             CCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHH-HHHHHHHHHHHHHhcccccch
Q 008450          123 QASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFI-SLGTLMAVTVLVYIQDEISRS  201 (565)
Q Consensus       123 ~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~lg~~lg~~i~g~l~~~~gw~  201 (565)
                          +++|+.+..-+++|+..+..+.++.+|+++..|++-      +.++.++.+..- .+|--+|.+|||.+.+.+|-|
T Consensus       457 ----~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~  526 (618)
T KOG3762|consen  457 ----QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGAR  526 (618)
T ss_pred             ----cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheeehhH
Confidence                348999999999999999999999999999999999      888988877664 689999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhcccc
Q 008450          202 VGYGICSVAMFMAIIIFLAGTKR  224 (565)
Q Consensus       202 ~~f~i~~~~~~~~~~~~~~~~~~  224 (565)
                      ..|.+.++.+++.++.+....+.
T Consensus       527 ttf~~~giAcl~~l~~~~~iq~~  549 (618)
T KOG3762|consen  527 TTFRIFGIACLVTLALFISIQLL  549 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999998888777666655443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.93  E-value=0.00011  Score=76.02  Aligned_cols=147  Identities=18%  Similarity=0.199  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           33 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      .+-++++.|+.+..|++..|.+..++.+..+.++++.++-++-.|+ ...|.+.+...+-.+-++..+++++        
T Consensus       254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~~g--------  324 (422)
T COG0738         254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALIGG--------  324 (422)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence            3446788998888999999999999999999999999999999998 8888888777666666666666522        


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                                       ..-+.+.++.|+..+..+|++.++..+..|++.        +..+..-.+..+|+++-|.+-|
T Consensus       325 -----------------~v~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s~~l~maivGGAiiP~l~G  379 (422)
T COG0738         325 -----------------VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGSGLLVMAIVGGAIIPPLQG  379 (422)
T ss_pred             -----------------hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------cccceeeeeheecchHHHHHHH
Confidence                             224455677899999999999999999999443        2333444455678888899999


Q ss_pred             HhcccccchhhHHHHHHHHHH
Q 008450          193 YIQDEISRSVGYGICSVAMFM  213 (565)
Q Consensus       193 ~l~~~~gw~~~f~i~~~~~~~  213 (565)
                      ++.|..|-...+.+...+|.+
T Consensus       380 ~i~d~~g~~~~~~~~pllc~l  400 (422)
T COG0738         380 VIADMFGIQLTFLIVPLLCYL  400 (422)
T ss_pred             HHHHhhhhHHHHHHHHHHHHH
Confidence            999999987777643333333

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.85  E-value=0.027  Score=60.29  Aligned_cols=61  Identities=18%  Similarity=0.144  Sum_probs=48.8

Q ss_pred             ceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhh
Q 008450          432 PVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVA  492 (565)
Q Consensus       432 ~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~  492 (565)
                      ..+...++.+.++.-+|.-..-....-++.|.+|++.||+.+|+-+..+++-..+.-.+.-
T Consensus       353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455666677788888887777888889999999999999999999988877777655543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.79  E-value=0.00092  Score=73.97  Aligned_cols=139  Identities=16%  Similarity=0.245  Sum_probs=101.1

Q ss_pred             cchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCccee
Q 008450          355 AGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVS  434 (565)
Q Consensus       355 ~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  434 (565)
                      ..++...+.+...+..|+++++.|.++||+.          +.+|.++..++.++.+-                   ..+
T Consensus        80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~----------~i~g~~l~vvG~Iv~at-------------------A~~  130 (599)
T PF06609_consen   80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRYF----------FIIGSLLGVVGSIVCAT-------------------AQN  130 (599)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHhcchHH----------HHHHHHHHHhHHHHhhc-------------------CCc
Confidence            4566777888888999999999999998854          78899999999988764                   235


Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccc
Q 008450          435 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRG  514 (565)
Q Consensus       435 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~  514 (565)
                      ...++....+.|+|.+..... ...+.|.+|.+.|+.+.++.....-....+++.+...+..      ..+|        
T Consensus       131 ~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~------~~~W--------  195 (599)
T PF06609_consen  131 MNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA------HSGW--------  195 (599)
T ss_pred             HHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc------CCCc--------
Confidence            556788999999987776644 5568999999999988877776555555566666655431      1345        


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhh
Q 008450          515 RLDLFYGLLAILSIINLVIYLICAV  539 (565)
Q Consensus       515 ~~~~~f~~~a~l~lv~~~~~~~~~~  539 (565)
                        .+.|++..++..+++++.++++.
T Consensus       196 --Rw~~~~~~i~~~i~~vl~~~fY~  218 (599)
T PF06609_consen  196 --RWIFYIFIIWSGIALVLIFFFYF  218 (599)
T ss_pred             --chHHHHHHHHHHHHHHHHHHHhC
Confidence              45677777777777766555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.78  E-value=0.0001  Score=58.96  Aligned_cols=65  Identities=25%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             HHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHH
Q 008450           26 CERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ   92 (565)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~   92 (565)
                      ..-.+.-.+.++++.|+. +.|+|+.|+|.+.++..+...++++++|+++||+ ||++.++....++
T Consensus        11 ~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~   75 (77)
T PF12832_consen   11 FYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence            333344456677888876 5899999999999999999999999999999999 8888777665543

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.74  E-value=0.00059  Score=73.05  Aligned_cols=109  Identities=15%  Similarity=0.054  Sum_probs=87.6

Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceee
Q 008450          356 GSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSV  435 (565)
Q Consensus       356 ~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  435 (565)
                      +.+.......-++.....+.+.|+++.|          +.+.++.+...+..++.++.                   .+.
T Consensus        65 G~I~s~F~ysYal~qIp~GlLaDrlG~K----------~vL~l~~l~Wsl~t~L~~fa-------------------~Sl  115 (511)
T TIGR00806        65 NEIIPVLPYSHLAVLVPVFLLTDYLRYK----------PVLVLQALSFVCVWLLLLLG-------------------TSV  115 (511)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCch----------HHHHHHHHHHHHHHHHHHHH-------------------HHH
Confidence            3444555556666666667777766766          33677777777777777663                   256


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhh
Q 008450          436 FLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVV  494 (565)
Q Consensus       436 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l  494 (565)
                      ..+.+.-++.|++++... +...++.+.+|++.|++++|+.+....+|.++++.+.+.+
T Consensus       116 ~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       116 WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678889999999999999 9999999999999999999999999999999999999984

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.00012  Score=79.60  Aligned_cols=156  Identities=12%  Similarity=0.071  Sum_probs=103.7

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhc----cccchhHHHHHHHHHHHHH-H
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADT----FLGRYKTIAIFAAVQTLGT-G   97 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Grr~~~~~~~~~~~~~~-~   97 (565)
                      .++|.....++...+++.|+.+..|++..+++.+...+.++.+++.+++|+++||    + .+|....+.+.++.+.. +
T Consensus       281 ~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~~~~~~g~~  359 (495)
T KOG2533|consen  281 CYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLCLYAIIGAI  359 (495)
T ss_pred             HHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHH
Confidence            7888888999999999999998778999999999999999999999999999999    5 77777777666655533 4


Q ss_pred             HHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhh
Q 008450           98 MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  177 (565)
Q Consensus        98 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (565)
                      .......                        ......+.+....+.+...++......+...++..     +-...+.+.
T Consensus       360 ~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k-----~~~~~~~~i  410 (495)
T KOG2533|consen  360 SLLAAAV------------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK-----ALTTVSAII  410 (495)
T ss_pred             HHHhhcc------------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchHH-----hHHHHhhhh
Confidence            4433311                        12222222333334444445555555555544431     444444444


Q ss_pred             HHHH-HHHHHHHHHHHHhcccccchhhHHHHH
Q 008450          178 FFIS-LGTLMAVTVLVYIQDEISRSVGYGICS  208 (565)
Q Consensus       178 ~~~~-lg~~lg~~i~g~l~~~~gw~~~f~i~~  208 (565)
                      ...+ .|.+.+++.-+.....++|...|....
T Consensus       411 ~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~  442 (495)
T KOG2533|consen  411 DGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV  442 (495)
T ss_pred             cchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence            4444 445555555566666678888885443

>PTZ00207 hypothetical protein; Provisional

Probab=97.66  E-value=0.0012  Score=73.45  Aligned_cols=131  Identities=13%  Similarity=0.099  Sum_probs=91.7

Q ss_pred             HHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHH
Q 008450          369 TLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAG  448 (565)
Q Consensus       369 ~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g  448 (565)
                      .....+.+.|++++|          +.+.+|.++..++.++.++....             ....+.+.+++..++.|+|
T Consensus        77 ~~lp~G~L~Dr~G~R----------~vllig~ll~~iG~ll~ala~~~-------------~i~~s~~~l~l~r~l~G~G  133 (591)
T PTZ00207         77 FLLPYSFIYDYLGPR----------PIFVLSMTVFCLGTLLFALTFQE-------------VIEGSVVRLSVYNGLMTLG  133 (591)
T ss_pred             HHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHHHHHHhcc-------------cccCcHHHHHHHHHHHHHH
Confidence            333457777766665          34788999999998877764210             0013566677788899999


Q ss_pred             HHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHH
Q 008450          449 EAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSI  528 (565)
Q Consensus       449 ~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~l  528 (565)
                      .+..++.....+.+.+| +.||++.|+......+|+++.+.+...+..       .+          ....|++.+++.+
T Consensus       134 ~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-------~~----------~~~~fl~l~vl~~  195 (591)
T PTZ00207        134 CMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-------DN----------TSAYFFFLMSFAL  195 (591)
T ss_pred             HHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh----------HHHHHHHHHHHHH
Confidence            99998888888898887 569999999999999999875555444321       01          2456677777777


Q ss_pred             HHHHHHhhhhhh
Q 008450          529 INLVIYLICAVW  540 (565)
Q Consensus       529 v~~~~~~~~~~~  540 (565)
                      +..++.+.+.+.
T Consensus       196 vv~ll~~~~vr~  207 (591)
T PTZ00207        196 VVGILAIVFMRL  207 (591)
T ss_pred             HHHHHHHhheeC
Confidence            766666555443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.63  E-value=0.00016  Score=74.14  Aligned_cols=112  Identities=16%  Similarity=0.117  Sum_probs=87.6

Q ss_pred             cchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCccee
Q 008450          355 AGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVS  434 (565)
Q Consensus       355 ~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  434 (565)
                      .+.+++...+.-.+..++++++.|+.+||-          .+.+|.+...++.++.+.-                   .+
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkp----------vll~c~~~va~s~ll~~~S-------------------~~  120 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRKP----------VLLACLIGVALSYLLWALS-------------------RN  120 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCchH----------HHHHHHHHHHHHHHHHHHH-------------------HH
Confidence            455666677778889999999999998883          3677777777777776652                   23


Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 008450          435 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKK  496 (565)
Q Consensus       435 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~  496 (565)
                      ...++++-++.|+.-+... ..-+++.|.++++.|+.+++...+..++|..+||++++++.-
T Consensus       121 F~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  121 FAAFVLARFLGGIFKGNLS-VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHHhhhhccCchH-HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            4344555677777665554 446899999999999999999999999999999999999864

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.60  E-value=0.00083  Score=70.62  Aligned_cols=155  Identities=15%  Similarity=0.177  Sum_probs=110.3

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcc---ccchhHHHH-HHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF---LGRYKTIAI-FAAVQTLGTGM   98 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~~-~~~~~~~~~~~   98 (565)
                      +.+--++++-.=.+++++|++ ++|.+.+-.+.+-.+--+...+.+|+.|..+||+   +||||.++. +....+++..+
T Consensus        40 ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~L  118 (498)
T KOG0637|consen   40 IAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFL  118 (498)
T ss_pred             HHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhh
Confidence            333344444555677888876 8899988888888888999999999999999986   477766555 44556667777


Q ss_pred             HHHHhhhcccCCCCCCCCCcccccCCc----chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceee
Q 008450           99 LAMVTKLRQLRPRPCKETATHTCEQAS----GFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  174 (565)
Q Consensus        99 ~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (565)
                      ..++..+-...           +.++.    ......+.++.-+.=+..-......-++++|....+++     +.++.+
T Consensus       119 ig~aaDig~~l-----------gd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-----~~~Ans  182 (498)
T KOG0637|consen  119 IGYAADIGLLL-----------GDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-----KTRANS  182 (498)
T ss_pred             hhhHhhhhHHh-----------cCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-----hhccch
Confidence            77775543211           11122    23455566666666677777778888999999877662     222999


Q ss_pred             hhhHHHHHHHHHHHHHHHHh
Q 008450          175 RFFFFISLGTLMAVTVLVYI  194 (565)
Q Consensus       175 ~~~~~~~lg~~lg~~i~g~l  194 (565)
                      ++..++.+|..+|...+++.
T Consensus       183 ~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  183 VFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hHHHHHHhcceeeeeccccc
Confidence            99999999999998888754

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.35  E-value=0.0031  Score=67.79  Aligned_cols=162  Identities=15%  Similarity=0.086  Sum_probs=103.4

Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcce-e
Q 008450          356 GSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPV-S  434 (565)
Q Consensus       356 ~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s  434 (565)
                      ++..+...++.++..+.++.+.    .|..     +-.+.+..|.+++.++-+++...+..               +. .
T Consensus        74 G~viaa~slg~~i~~liF~~Ws----~k~~-----~~k~Pli~s~ii~~~g~llY~~l~~~---------------~~~~  129 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWS----NKTG-----SVKKPLIVSFLIAIIGNLLYLALAYV---------------PNGV  129 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccc----cccC-----CcccCHHHHHHHHHHHHHHHHHHHhc---------------ccch
Confidence            4455557778888888887663    3322     12344899999999999988655432               23 6


Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccc
Q 008450          435 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRG  514 (565)
Q Consensus       435 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~  514 (565)
                      -++++++.++.|+|.+.. ...=.|+++..-.+.|.++++..+....+|..+||.+...+....+  ++..|.+. +.-+
T Consensus       130 ~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~--~G~~i~~~-~~~n  205 (488)
T KOG2325|consen  130 KYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGE--KGFMILPG-LIFN  205 (488)
T ss_pred             HHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC--CceEEcCc-ceEE
Confidence            677888999999986553 3445677775555556666666666555666666655544432211  12233331 2223


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 008450          515 RLDLFYGLLAILSIINLVIYLICAVWYKPKK  545 (565)
Q Consensus       515 ~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~  545 (565)
                      -+...-|+.+++.++..++.+.+.+|..++.
T Consensus       206 ~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  206 MYTAPAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             ecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            3566678899999999988888887765444

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.34  E-value=0.0031  Score=57.73  Aligned_cols=137  Identities=11%  Similarity=0.118  Sum_probs=99.0

Q ss_pred             HHHHHHhHHHHHHHHHHhhhcCCCC------chhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHH
Q 008450           25 LCERLSTMGIAVNLVTYLVGTMHLP------SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGM   98 (565)
Q Consensus        25 ~~~~~~~~~~~~~l~~yl~~~l~~s------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~   98 (565)
                      ++..++-|....++...+.++.+-+      ....-.-.++......+.++++..+.+++ |.|+.++++.+.+.+-.+.
T Consensus         5 f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~   83 (156)
T PF05978_consen    5 FMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIAS   83 (156)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence            4444555666666666665554432      22223334555666777888888999998 9999999998887754444


Q ss_pred             HHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhH
Q 008450           99 LAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  178 (565)
Q Consensus        99 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (565)
                      ...    |                     +.+.++++-++.|+|.+..+.+...++.+..++++      +++-.+++..
T Consensus        84 ~~~----~---------------------~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~  132 (156)
T PF05978_consen   84 FFY----P---------------------NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWA  132 (156)
T ss_pred             HHh----h---------------------hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHH
Confidence            322    2                     36789999999999999999999999999887776      8888888888


Q ss_pred             HHHHHHHHHHHHHHH
Q 008450          179 FISLGTLMAVTVLVY  193 (565)
Q Consensus       179 ~~~lg~~lg~~i~g~  193 (565)
                      ..+.+.++|.++.-.
T Consensus       133 i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  133 IFQSSLIFGNLFLFF  147 (156)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888887777655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.31  E-value=4.5e-06  Score=89.96  Aligned_cols=169  Identities=14%  Similarity=0.086  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHH-HHhhhcccCC
Q 008450           32 MGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLA-MVTKLRQLRP  110 (565)
Q Consensus        32 ~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a-~~~~~~~~~~  110 (565)
                      +....+..+++.+..+.+..  -.......+...++.+++.++.||+ |||++++++..+.+++.+.++ .....++   
T Consensus       269 ~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~~~~~~~~~~~~~~---  342 (451)
T PF00083_consen  269 INFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAICSLILGIIFFLGVS---  342 (451)
T ss_pred             cccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc---
Confidence            33444455555666677666  2222334455667777788999999 999999999888888777765 1100010   


Q ss_pred             CCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHH
Q 008450          111 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTV  190 (565)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i  190 (565)
                                  .+...+...+............+..+....+..|.+|.+.      |+++.++.+....++.++++.+
T Consensus       343 ------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~~~~~i~~~i~~~~  404 (451)
T PF00083_consen  343 ------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSYAVGRIGGFIIPFL  404 (451)
T ss_pred             ------------cccccccccceeeeeccccccccccccccccccccccccc------cccccccccccccccccccccc
Confidence                        0000111111111111112222344666688899999999      9999999999999999999888


Q ss_pred             HHHhcccccchhhHHHHHHHHHHHHHHHHhcccc
Q 008450          191 LVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKR  224 (565)
Q Consensus       191 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  224 (565)
                      ..++.+..+-...|.+.+.++++..+..++..|+
T Consensus       405 ~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE  438 (451)
T PF00083_consen  405 FPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE  438 (451)
T ss_pred             cccccccccccccchhhHHHHHHHHhheeEEEee
Confidence            8888776663445555555555555554444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.30  E-value=0.0021  Score=70.91  Aligned_cols=134  Identities=20%  Similarity=0.256  Sum_probs=103.8

Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceee
Q 008450          356 GSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSV  435 (565)
Q Consensus       356 ~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  435 (565)
                      +++.+...+...+..++.+++.|+++||.          .+.++.++..++.++.++.                   .+.
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~----------~l~~~~~~~~iG~ii~~~a-------------------~~~  142 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKK----------TLLLAVVLFLIGAIIIALA-------------------PSW  142 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHHHHHHHHHh-------------------hhH
Confidence            57788888888999999999999888883          3778888888888877763                   377


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccch
Q 008450          436 FLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGR  515 (565)
Q Consensus       436 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~  515 (565)
                      ..++++-++.|+|.++.......++.|.+|++.||...++.+....+|..++ ++.+...   ++.. .+|         
T Consensus       143 ~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~---~~~~-~~W---------  208 (513)
T KOG0254|consen  143 YQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGT---SKVY-AGW---------  208 (513)
T ss_pred             HHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh---ccCC-ccH---------
Confidence            7889999999999999999999999999999999999999999999888888 3333322   1110 234         


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 008450          516 LDLFYGLLAILSIINLVI  533 (565)
Q Consensus       516 ~~~~f~~~a~l~lv~~~~  533 (565)
                       ...+++..+.+++-.+.
T Consensus       209 -r~~~~~~~i~~~~~~~~  225 (513)
T KOG0254|consen  209 -RIPLGLALIPAVILALG  225 (513)
T ss_pred             -HHHHHHHHHHHHHHHHH
Confidence             34556666666665555

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.15  E-value=0.0032  Score=69.43  Aligned_cols=129  Identities=15%  Similarity=0.158  Sum_probs=99.4

Q ss_pred             hhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeeh
Q 008450          357 SLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVF  436 (565)
Q Consensus       357 ~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  436 (565)
                      ....+..++.++...+++.+.|+++||          ..+..++++..++-...++                   ..+++
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk----------~~~~~~~~~~~i~~~~~a~-------------------a~~~~  172 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRK----------PVLLVSLLLFIIFGILTAF-------------------APNYW  172 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccH----------HHHHHHHHHHHHHHHHHHH-------------------hCcHH
Confidence            345556666667777777777776666          3366677776666655554                   45777


Q ss_pred             hhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchh
Q 008450          437 LLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRL  516 (565)
Q Consensus       437 ~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~  516 (565)
                      ..++.-++.|++........+.+..|..+++.|+.+..+ ....+.++.+++.+.+++..        +|          
T Consensus       173 ~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------  233 (521)
T KOG0255|consen  173 MFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------  233 (521)
T ss_pred             HHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------
Confidence            888899999999999999999999999999999999999 88888888888888887642        44          


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 008450          517 DLFYGLLAILSIINLVI  533 (565)
Q Consensus       517 ~~~f~~~a~l~lv~~~~  533 (565)
                      .+.+++.++..++.++.
T Consensus       234 r~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  234 RWLFWIISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56677777777776666

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.09  E-value=0.62  Score=50.61  Aligned_cols=142  Identities=12%  Similarity=0.081  Sum_probs=88.8

Q ss_pred             HHhhhcCCC-----CchhhhhHHHHHHHHHHHH-HhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcc---cCC
Q 008450           40 TYLVGTMHL-----PSATSANIVTDFMGTSFLL-CLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQ---LRP  110 (565)
Q Consensus        40 ~yl~~~l~~-----s~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~---~~~  110 (565)
                      --+.+.+..     +..+..++.+...+.+.+. .++-+++++|+ +|++++.+....+..-.+++++.- .|.   +.+
T Consensus        27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~~~~~F~~~f~lF~~vl-~p~~~~~~p  104 (472)
T TIGR00769        27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYTVISPFLGFFALFAFVI-YPLSDLLHP  104 (472)
T ss_pred             HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHHHHHHHHHHHHHHHHHH-hcchhhcCC
Confidence            334555655     3356788888776666555 88889999999 999999988888887777766651 121   000


Q ss_pred             CCCCCCCcccccCCc-----------chhHHHHHHHHHHHHHhcccccc-chhhhhhccCCCCChHhhhhhcceeehhhH
Q 008450          111 RPCKETATHTCEQAS-----------GFQMGVLYIALYLIALGTGGLKS-SVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  178 (565)
Q Consensus       111 ~~~~~~~~~~~~~~~-----------~~~~~~l~i~r~l~g~g~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (565)
                      .   +++....+..+           .+....+++.-=+.   .....+ ..-++..|.+..+|      -.|.++++..
T Consensus       105 ~---~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw---~~~vvS~lFW~fandi~t~~q------akRfy~l~~~  172 (472)
T TIGR00769       105 T---ALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELW---GSVVLSLLFWGFANQITTIDE------AKRFYALFGL  172 (472)
T ss_pred             c---HHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHH
Confidence            0   00000001111           11122222222222   122222 55678899998888      7889999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 008450          179 FISLGTLMAVTVLVYIQ  195 (565)
Q Consensus       179 ~~~lg~~lg~~i~g~l~  195 (565)
                      +.|+|.++|+.+..++.
T Consensus       173 ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       173 GANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.86  E-value=0.0065  Score=49.34  Aligned_cols=68  Identities=12%  Similarity=0.056  Sum_probs=61.3

Q ss_pred             HHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 008450           36 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTK  104 (565)
Q Consensus        36 ~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~  104 (565)
                      ..+.|.++++.++|..+.+++.+.-.+++.++++...++.++. .+++.+..++++..+..+.+++.++
T Consensus        12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen   12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455677889999999999999999999999999999999997 8899999999999999999998844

Note that many members are hypothetical proteins.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.76  E-value=0.28  Score=50.93  Aligned_cols=63  Identities=14%  Similarity=0.139  Sum_probs=47.9

Q ss_pred             ceeehh-hHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhh
Q 008450          432 PVSVFL-LIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVV  494 (565)
Q Consensus       432 ~~s~~~-li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l  494 (565)
                      +...++ .+..+.+........+.+..++.++++|+...|++|.+.|+...+|+.-=..+...+
T Consensus       365 ~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l  428 (510)
T KOG3574|consen  365 PRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWL  428 (510)
T ss_pred             eechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHh
Confidence            444333 344677777777777888899999999999999999999999998876555554444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.71  E-value=0.0063  Score=65.82  Aligned_cols=125  Identities=14%  Similarity=0.145  Sum_probs=106.1

Q ss_pred             HHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhH-HHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 008450           39 VTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGG-FLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETA  117 (565)
Q Consensus        39 ~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  117 (565)
                      ..|+...++++..+.+.+.+.......++..+.. .+...+ |-|+++.+|++...+...+.++++              
T Consensus       265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lGl~~~~~~~~~~af~~--------------  329 (463)
T KOG2816|consen  265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLGLLSEFLQLLLFAFAT--------------  329 (463)
T ss_pred             EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHHHHHHHHHHHHHHHhc--------------
Confidence            3566667999999999999999999999999888 556555 999999999999999999999983              


Q ss_pred             cccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhc
Q 008450          118 THTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  195 (565)
Q Consensus       118 ~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~  195 (565)
                                +.++++....+.++. +...|+..++++.+.++++      +|+.+++......+...++|.+-+.+.
T Consensus       330 ----------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  330 ----------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             ----------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence                      366677777776555 5666999999999999999      999999999999999999988887653

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=96.54  E-value=0.0021  Score=67.75  Aligned_cols=128  Identities=13%  Similarity=0.055  Sum_probs=92.4

Q ss_pred             HHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhcccc
Q 008450           67 LCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGL  146 (565)
Q Consensus        67 ~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~  146 (565)
                      +-.++.++.|+. |||+.-+-+.+++.+-.+..+..-+             |+. |....  .....+.   +-++.-+-
T Consensus       364 Gyw~tv~~id~i-GRk~iq~~GF~~~~i~~~~~~~~y~-------------~~~-~~~Gf--~v~y~l~---~ff~NFGP  423 (538)
T KOG0252|consen  364 GYWFTVYFIDII-GRKYIQLMGFFIMTIFFFVIAGPYN-------------QLE-NTIGF--VVLYSLT---FFFGNFGP  423 (538)
T ss_pred             ceeEEEEEeehh-hhHHHHHhhHHHHHHHHHHHcCCcc-------------ccc-ccCce--eehHHHH---HHHHhcCC
Confidence            555677889998 9999999999999887777766411             111 22221  1112222   22333444


Q ss_pred             ccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcc-----cccchhhHHHHHHHHHHHHHHHHh
Q 008450          147 KSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD-----EISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~-----~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                      ..+...+-+|.||.+-      |+...++.-+..-.|+++|.....++.+     ..+.+.+|++.+.++++..+.-++
T Consensus       424 n~ttfivpaE~FParv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l  496 (538)
T KOG0252|consen  424 NATTFIVPAEIFPARV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL  496 (538)
T ss_pred             CceeEEeehhhchHHH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence            4455667789999999      9999999999989999999999999998     889999999988887776655444

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.91  E-value=0.017  Score=61.81  Aligned_cols=119  Identities=18%  Similarity=0.232  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCch--hhHH
Q 008450          394 QRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKG--MKTM  471 (565)
Q Consensus       394 ~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~  471 (565)
                      +.+.+|.+++.++.++++.-.                 ..+...+.++++++++|.++.=|...++..|+.|++  .|-.
T Consensus        93 ~tI~lGail~~iGh~~L~~~~-----------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~  155 (498)
T COG3104          93 RTIVLGAILMAIGHLVLAISS-----------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDG  155 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-----------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCC
Confidence            448999999999999987631                 135667888999999999999898889999988764  2566


Q ss_pred             HHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 008450          472 STGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKK  545 (565)
Q Consensus       472 ~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~  545 (565)
                      +.+++.+.-++|+.++|.+.+++....                +++..|...++-+.++++.++...++.+...
T Consensus       156 gFt~fY~~iNiGsl~~p~i~~~~~~~~----------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~  213 (498)
T COG3104         156 GFTLFYMGINIGSLIAPIITGLLAINY----------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIG  213 (498)
T ss_pred             CccEEEEEeehHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence            777888888899999999999885321                2467788999999999999888877665443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.79  E-value=0.084  Score=59.50  Aligned_cols=102  Identities=17%  Similarity=0.204  Sum_probs=77.3

Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCC---------CCC
Q 008450          435 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKG---------GGG  505 (565)
Q Consensus       435 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~---------~~~  505 (565)
                      +..++++.++.|+|....++...+|+-|-+-++.-..+.|+..+...+|.++|-++++...+.+-+-+         .+.
T Consensus       237 ~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPr  316 (735)
T KOG3626|consen  237 FLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPR  316 (735)
T ss_pred             HHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcc
Confidence            33566799999999999999999999999999999999999999999999999999998876554321         223


Q ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 008450          506 WLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYK  542 (565)
Q Consensus       506 w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~  542 (565)
                      |++      .+-.-|.+.+.+.++..+.++++-++..
T Consensus       317 WIG------AWWlGFLi~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  317 WIG------AWWLGFLICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             hhh------HHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence            321      1222356677777777777666655543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.79  E-value=0.09  Score=55.33  Aligned_cols=124  Identities=17%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCch---hhHH
Q 008450          395 RMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKG---MKTM  471 (565)
Q Consensus       395 ~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~rg~  471 (565)
                      .+.+|.++..+|.+++.+.....          ...+..+...+.+++++.++|.++.=|....+..|+.+++   .|.+
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~~----------~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~   72 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIPP----------SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDS   72 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTSS----------SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhcc----------hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhh
Confidence            46788999999998866542110          0011334577888999999999999999999999999876   4666


Q ss_pred             HHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 008450          472 STGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPK  544 (565)
Q Consensus       472 ~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~  544 (565)
                      +...+..+.++|+.++..+.+++.+.      .+          +...|++.++..+++.+.++...+.++..
T Consensus        73 ~F~~fY~~in~G~~~~~~~~~~i~~~------~~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   73 FFNWFYWGINIGSLFSPTLVPYIQQN------YG----------WFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHC------S-----------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hHHHHHHHHhhhhHhhcccchhhccc------cc----------hhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            77778888899999999888877521      22          46778899999999988887776666554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.75  E-value=0.083  Score=56.61  Aligned_cols=159  Identities=11%  Similarity=0.010  Sum_probs=118.7

Q ss_pred             cccCCCCCCCchhhHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHH
Q 008450           10 DYKGSPADPSKTGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFA   89 (565)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~   89 (565)
                      +|++||.++.+-...+.. ++..+.-..+..|+... |+++.+.|..=+...+....+.....++.+|+ |--|.=..++
T Consensus       254 ~Y~~q~vflas~alalLY-~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l  330 (432)
T PF06963_consen  254 TYFRQPVFLASFALALLY-FTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSL  330 (432)
T ss_pred             HHHhCHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHH
Confidence            355566665555444433 22334445567787755 99999999999999999999999999999999 9999999998


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCC-cchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhh
Q 008450           90 AVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQA-SGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ  168 (565)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  168 (565)
                      ..+.....++..+-..|.               .+ .......++.+..+.-+|.=++--+...++-|..|+++      
T Consensus       331 ~~q~~~L~~~v~~~~~~~---------------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------  389 (432)
T PF06963_consen  331 WWQWVCLALCVVSFWAPG---------------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------  389 (432)
T ss_pred             HHHHHHHHHHHHHHhcCC---------------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------
Confidence            888776666555422222               11 22456777778888888888888889999999999988      


Q ss_pred             hcceeehhhHHHHHHHHHHHHHHH
Q 008450          169 MAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       169 r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                      ||...+......++--++-.+++-
T Consensus       390 Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  390 RGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988877755544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=95.75  E-value=0.23  Score=54.72  Aligned_cols=154  Identities=13%  Similarity=0.046  Sum_probs=88.6

Q ss_pred             HHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHH--HHHHHH-HHHHHhhhcccCCCCCC
Q 008450           38 LVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV--QTLGTG-MLAMVTKLRQLRPRPCK  114 (565)
Q Consensus        38 l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~--~~~~~~-~~a~~~~~~~~~~~~~~  114 (565)
                      ..-.+..-+|-+..+.+.++++|.++..+++.++|+++++- -|+ ...+-+.+  ....+. +.....  +.       
T Consensus        37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~-~~~~e~~i~l~~~~~~~ll~~~~--~~-------  105 (521)
T PRK03612         37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAG-FVAVELLLALLGGLSALILYAAF--AF-------  105 (521)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHH-HHHHHHHHHHHHHHHHHHHHHHH--HH-------
Confidence            44444556788899999999999999999999999887553 222 22221111  111111 111110  00       


Q ss_pred             CCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHh
Q 008450          115 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI  194 (565)
Q Consensus       115 ~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l  194 (565)
                                .......++...++.++..|+..|....+..+... ++      -++..+..|....+|+++|.++.+++
T Consensus       106 ----------~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~l~~~~v  168 (521)
T PRK03612        106 ----------QGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGGLAFPFL  168 (521)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence                      00011223444556677788877777666655322 12      45667888889999999999998865


Q ss_pred             cc-cccch-hhHHHHHHHHHHHHHHHH
Q 008450          195 QD-EISRS-VGYGICSVAMFMAIIIFL  219 (565)
Q Consensus       195 ~~-~~gw~-~~f~i~~~~~~~~~~~~~  219 (565)
                      .- ..|-. ..+.+..+..+++++.++
T Consensus       169 Llp~lG~~~t~~~~a~l~~~~a~~~~~  195 (521)
T PRK03612        169 LLPRLGLIRTAALTGSLNLLAALVFLW  195 (521)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            43 56643 344433333334433333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.71  E-value=0.13  Score=50.88  Aligned_cols=91  Identities=20%  Similarity=0.260  Sum_probs=66.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHH
Q 008450          392 NLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTM  471 (565)
Q Consensus       392 ~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~  471 (565)
                      +...+.+|.++..+++........++            -...+.+.+.+...+.+.+....+++......+.+|+ .||+
T Consensus        65 p~~~l~iG~~~~~~GY~~~~l~~~~~------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~  131 (250)
T PF06813_consen   65 PWVVLLIGAVLGFVGYGLLWLAVSGR------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGT  131 (250)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCc------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCc
Confidence            34457889999999997765543211            1124555566666777777777777777777788985 6999


Q ss_pred             HHHHHHHHHHHHHHHhhHHhhhhh
Q 008450          472 STGLFLTTLSLGFFVSSFLVAVVK  495 (565)
Q Consensus       472 ~~gl~~~~~~lg~~ig~~l~~~l~  495 (565)
                      +.|+......+++++-+.+...+.
T Consensus       132 vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  132 VVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             eehhhhHHHHhHHHHHHHHHHHHc
Confidence            999999999999988888776653

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.59  E-value=0.073  Score=60.25  Aligned_cols=95  Identities=24%  Similarity=0.419  Sum_probs=76.2

Q ss_pred             CCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCcc
Q 008450          428 TATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWL  507 (565)
Q Consensus       428 ~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~  507 (565)
                      +..+..+.+|.++++++.++||.+...+...+..+.+|+++|+...+++.....+|..+...+...=.           .
T Consensus       558 ~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~-----------~  626 (654)
T TIGR00926       558 VSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFEN-----------F  626 (654)
T ss_pred             cCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------C
Confidence            44667899999999999999999999999999999999999999999999999999998887765411           0


Q ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008450          508 ADNINRGRLDLFYGLLAILSIINLVIYLICAV  539 (565)
Q Consensus       508 ~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~  539 (565)
                            .....-|..++.+.++-.+++.++.+
T Consensus       627 ------~~~~~~~~~~~~~~~~~~~~f~~~a~  652 (654)
T TIGR00926       627 ------SVQAAEFFLFASLMLVVMAIFSILAY  652 (654)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  11234567777777777777666553

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.31  E-value=0.16  Score=54.78  Aligned_cols=135  Identities=20%  Similarity=0.219  Sum_probs=87.4

Q ss_pred             HHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHH
Q 008450          369 TLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAG  448 (565)
Q Consensus       369 ~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g  448 (565)
                      .-|+++.+.|-+--.     ...++..+++|.++..++...++.....               ..+.....+.+++..+|
T Consensus        40 ~Kp~~g~lsD~~pi~-----G~rr~~Y~~i~~~~~~~~~~~~~~~~~~---------------~~s~~~~~~~l~la~~g   99 (433)
T PF03092_consen   40 IKPLYGLLSDSFPIF-----GYRRKPYMIIGWLLGAVSALVLALLPAS---------------ESSAAIAVVLLFLASFG   99 (433)
T ss_pred             HhhhHHhhccccccc-----CCcchHHHHHHHHHHHHHHHHHHhcccc---------------cchhhhHHHHHHHHHHH
Confidence            345555555543211     1122345777888777666666554210               23444556677788889


Q ss_pred             HHHhhhhhHhhhhccC---CchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHH
Q 008450          449 EAFIYTGQLDFFITKS---PKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAI  525 (565)
Q Consensus       449 ~~~~~~~~~~~~~~~~---P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~  525 (565)
                      ..+.....-+...|..   |.+ +|...+....+..+|+.++..+++.+....+                ....|.+.+.
T Consensus       100 ~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~----------------~~~~f~i~~~  162 (433)
T PF03092_consen  100 YAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG----------------PQGVFLISAA  162 (433)
T ss_pred             HHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC----------------CeEEehHHHH
Confidence            9888888888888776   444 8888999999999999999999888753221                1234666677


Q ss_pred             HHHHHHHHHhhhhhh
Q 008450          526 LSIINLVIYLICAVW  540 (565)
Q Consensus       526 l~lv~~~~~~~~~~~  540 (565)
                      +.++..+..+....|
T Consensus       163 ~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  163 LPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHHHhhhh
Confidence            766666666666555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=95.17  E-value=0.23  Score=45.50  Aligned_cols=61  Identities=20%  Similarity=0.397  Sum_probs=54.3

Q ss_pred             eehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhh
Q 008450          434 SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVV  494 (565)
Q Consensus       434 s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l  494 (565)
                      +.+.++++-++.|++.+..+++.-.++.+...++.+++.++++......+.++|..+.-.+
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999999999999999999998888888765544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.07  E-value=0.24  Score=52.57  Aligned_cols=153  Identities=11%  Similarity=0.072  Sum_probs=93.3

Q ss_pred             CCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCc
Q 008450           46 MHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQAS  125 (565)
Q Consensus        46 l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  125 (565)
                      -|.+...+|++.....++.++++.++|.++||...-|++.++......++. ++........                  
T Consensus       296 sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~-~~l~~~t~~~------------------  356 (480)
T KOG2563|consen  296 SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT-LMLLTCTLFL------------------  356 (480)
T ss_pred             ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHhhccC------------------
Confidence            466667889999999999999999999999998455566665555544443 2222211111                  


Q ss_pred             chhHHHHHHHHHHHHHhccccccchhhhhhccC-CCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccccc---ch
Q 008450          126 GFQMGVLYIALYLIALGTGGLKSSVSGFGTDQF-DEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEIS---RS  201 (565)
Q Consensus       126 ~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~g---w~  201 (565)
                       .....++.-..+.|.+..+..|.-.-+..|.. |..+       +.-.|+.....++=.++=..+-+.+.+..+   |.
T Consensus       357 -~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~  428 (480)
T KOG2563|consen  357 -GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNT  428 (480)
T ss_pred             -CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCC
Confidence             12344666667778888888898888888765 5554       333455555554433344455666666555   33


Q ss_pred             hh-HHHHHHHHHHHHHHHHhccccc
Q 008450          202 VG-YGICSVAMFMAIIIFLAGTKRY  225 (565)
Q Consensus       202 ~~-f~i~~~~~~~~~~~~~~~~~~~  225 (565)
                      .. -+......++..++..+.++.+
T Consensus       429 ~~~~i~~~~~~~l~~~lva~~r~~y  453 (480)
T KOG2563|consen  429 FPANIFLTVSALLGAILVAFFRPDY  453 (480)
T ss_pred             ccchhHhHHHHHHHHHHHhhhhhhH
Confidence            32 2333334444455555555544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.02  E-value=0.0064  Score=67.25  Aligned_cols=168  Identities=15%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHH-HHHHHHhhhHHHhhcc-ccchhHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMG-TSFLLCLLGGFLADTF-LGRYKTIAIFAAVQTLGTGMLA  100 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Grr~~~~~~~~~~~~~~~~~a  100 (565)
                      ...++.+..-|+..+++-|+...+++++++++.+.+...+ +..++.+++|++..|+ ++.|+++....+...++.++..
T Consensus       313 a~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~  392 (539)
T PF03137_consen  313 AGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYS  392 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHH
Confidence            5566667788999999999999999999999999987755 6788999999999997 4456666665555554443311


Q ss_pred             ---H-H-hhhcccCC--CCC----------------CCC--------CcccccCCcchhHHHHHHHHHHHHHhccccccc
Q 008450          101 ---M-V-TKLRQLRP--RPC----------------KET--------ATHTCEQASGFQMGVLYIALYLIALGTGGLKSS  149 (565)
Q Consensus       101 ---~-~-~~~~~~~~--~~~----------------~~~--------~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~  149 (565)
                         + . .+.| +..  .+|                ..+        ..-.|+..=..++..+++..++..+..+.....
T Consensus       393 ~~~~~~C~~~~-~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p  471 (539)
T PF03137_consen  393 PLFFLGCPNPP-IAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVP  471 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHeecCCCCc-eeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccc
Confidence               1 0 0100 000  011                110        011122221124556666666665666665566


Q ss_pred             hhhhhhccCCCCChHhhhhhcceeehhhHHHH-HHHHHHHHHHHHhccc
Q 008450          150 VSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS-LGTLMAVTVLVYIQDE  197 (565)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-lg~~lg~~i~g~l~~~  197 (565)
                      .....-+.+|+++      |+.+.++...... +|.+=||++.|.+.|.
T Consensus       472 ~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  472 STLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -------------------------------------------------
T ss_pred             hheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            6667778899999      9999999887764 7899999999998874

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.98  E-value=0.39  Score=47.59  Aligned_cols=142  Identities=17%  Similarity=0.113  Sum_probs=94.1

Q ss_pred             hhhhHHHHHHHHHHHHHhhhHHHhhccccch--hHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchhH
Q 008450           52 TSANIVTDFMGTSFLLCLLGGFLADTFLGRY--KTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQM  129 (565)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (565)
                      --|.+.+.|++++++++-+..++..|- ..|  ..+.+.+++.+....+.... +..+                |+.+.+
T Consensus       283 PhGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt-~~vs----------------P~kes~  344 (454)
T KOG4332|consen  283 PHGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILT-SSVS----------------PSKESP  344 (454)
T ss_pred             CchhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHH-hccC----------------CCcCCc
Confidence            358999999999999999998888775 333  34444444444433333332 2111                334556


Q ss_pred             HHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Q 008450          130 GVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSV  209 (565)
Q Consensus       130 ~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~  209 (565)
                      ..-+++..+.-.+.|.++|+..-+=.++.|++.      |...++++..-.|+=.-++...--.-..-.+=|..|.++.+
T Consensus       345 ~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~  418 (454)
T KOG4332|consen  345 SESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSA  418 (454)
T ss_pred             hHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHH
Confidence            666788888888999999999999999999998      99999998877765444431110000112356778888877


Q ss_pred             HHHHHHHH
Q 008450          210 AMFMAIII  217 (565)
Q Consensus       210 ~~~~~~~~  217 (565)
                      ...++.+.
T Consensus       419 ~~~~a~i~  426 (454)
T KOG4332|consen  419 FLFVASIL  426 (454)
T ss_pred             HHHHHHHH
Confidence            76666444

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.96  E-value=0.5  Score=50.29  Aligned_cols=167  Identities=11%  Similarity=0.079  Sum_probs=107.8

Q ss_pred             HHhHHHHHHHHHHHHhhhcccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCc
Q 008450          313 VARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTN  392 (565)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~  392 (565)
                      ++....+.+...+.|+.-.++.+.+.++. ..+..      -.+.......+..++..|+.+...|+-..|+.+||    
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk------~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR----  102 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQSL-GVPHK------WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR----  102 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHc-CCCcc------cccccccccccccceeccccccccccccccccccc----
Confidence            33333344444555565555555554432 11111      12334455566777888999999888777776643    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHH-
Q 008450          393 LQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTM-  471 (565)
Q Consensus       393 ~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~-  471 (565)
                       .-+.++.+++.+++.++++.......-.+. + +..+...+....++.+.+.-+....+..+.-++..+..-++.+-+ 
T Consensus       103 -PfI~~~s~~i~~~l~Lig~aaDig~~lgd~-~-~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~  179 (498)
T KOG0637|consen  103 -PFILAGSLLIAVSLFLIGYAADIGLLLGDN-E-RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR  179 (498)
T ss_pred             -chHHHhhHHHHHHHhhhhhHhhhhHHhcCC-c-ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc
Confidence             336788888888888887764332211110 0 011233556667778888888888888788888888886666766 


Q ss_pred             HHHHHHHHHHHHHHHhhHHhhh
Q 008450          472 STGLFLTTLSLGFFVSSFLVAV  493 (565)
Q Consensus       472 ~~gl~~~~~~lg~~ig~~l~~~  493 (565)
                      +.+.+.+.-.+|+.+|-.+.++
T Consensus       180 Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  180 ANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             cchhHHHHHHhcceeeeecccc
Confidence            9999999999999998887764

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.40  E-value=1.3  Score=47.74  Aligned_cols=117  Identities=18%  Similarity=0.138  Sum_probs=80.5

Q ss_pred             HHHHHHHHhhhHHHh---hccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcc--hhHHHHHHH
Q 008450           61 MGTSFLLCLLGGFLA---DTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASG--FQMGVLYIA  135 (565)
Q Consensus        61 ~~~~~~~~~~~G~la---Dr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~  135 (565)
                      ..+..++..+.+.+.   +++ ||++++.++..+..++.++.-..  .|.      +-+-++|-+.+..  .......+.
T Consensus       289 g~g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~--~p~------dap~~~t~~~~~~~~~~~~~~~ii  359 (461)
T KOG3098|consen  289 GLGEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLS--FPN------DAPLRPTDSPPLLFTPSYYLALII  359 (461)
T ss_pred             hHHHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhcc--ccc------cCCCCCCcccccccccchhHHHHH
Confidence            444555556666665   456 99999999999999888877654  233      2222333333333  345566677


Q ss_pred             HHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHH
Q 008450          136 LYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVY  193 (565)
Q Consensus       136 r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~  193 (565)
                      -+++|++-+......+.++++.+ +++      |..+++++..-..++..++......
T Consensus       360 ~~l~G~~D~~~~t~~~~ii~~~~-~~~------~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  360 GFLLGFGDACFNTQRYVIIALLY-PDD------RAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHh-cCc------hHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            78899999999999999999999 444      7788888777777777665444443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.22  E-value=19  Score=38.79  Aligned_cols=59  Identities=12%  Similarity=0.158  Sum_probs=50.5

Q ss_pred             eehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhh
Q 008450          434 SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVA  492 (565)
Q Consensus       434 s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~  492 (565)
                      +-++.++..++.|+..+........+..+.++++.|..+..+..++..+|-.+|+.++-
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777889999888888888889999999999999999999998999888887754

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=91.65  E-value=0.81  Score=48.47  Aligned_cols=113  Identities=9%  Similarity=-0.016  Sum_probs=77.1

Q ss_pred             chhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHH--HHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcch
Q 008450           50 SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA--VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGF  127 (565)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (565)
                      ..+..+...+|.+|.++++--.-++     --|++.+.+++  +..+-.++.++-..+|+                    
T Consensus       280 r~~Y~~Y~~~YQ~GVFISRSS~~~~-----rir~lwils~LQ~~nl~~~~l~s~~~fips--------------------  334 (402)
T PF02487_consen  280 RDQYRWYQLLYQLGVFISRSSLPFF-----RIRRLWILSLLQVINLVFLLLQSWYRFIPS--------------------  334 (402)
T ss_pred             HHHHHHHHHHHHHHHhhhhcceeee-----ehhhHHHHHHHHHHHHHHHHHHHHHHHhhH--------------------
Confidence            3556677778888777775433221     23444443322  22223334444433343                    


Q ss_pred             hHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHh
Q 008450          128 QMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI  194 (565)
Q Consensus       128 ~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l  194 (565)
                       .+.+++..+..|+..|+.+.+....+.|..|+++      |..+++...++-++|..++..++-++
T Consensus       335 -i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  335 -IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             -HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             7778888889999999999999999999888777      99999998888888888887666544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=91.05  E-value=5.9  Score=39.28  Aligned_cols=61  Identities=10%  Similarity=0.117  Sum_probs=41.4

Q ss_pred             hhhcceeehhhHHHHHHHHHHHHHHHHh---cc--cccchhhHHHHHHHHHHHHHHHHhccccccc
Q 008450          167 TQMAYFFSRFFFFISLGTLMAVTVLVYI---QD--EISRSVGYGICSVAMFMAIIIFLAGTKRYRY  227 (565)
Q Consensus       167 ~~r~~~~~~~~~~~~lg~~lg~~i~g~l---~~--~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~  227 (565)
                      |+|+.......++.|+|+++.-+..-..   .+  ...|++++.+.+.+.++-++++....++.+.
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~   67 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDI   67 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            3478888888888899988774332211   11  2349999998888877777777776666543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=90.58  E-value=29  Score=37.80  Aligned_cols=54  Identities=19%  Similarity=0.146  Sum_probs=45.7

Q ss_pred             hhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHH
Q 008450          437 LLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFL  490 (565)
Q Consensus       437 ~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l  490 (565)
                      .++...++..+.....+.+..++.++++.+..-|++|.+.|+.+++|+---..+
T Consensus       407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~  460 (544)
T PF13000_consen  407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTF  460 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHH
Confidence            345577888888888889999999999999999999999999999998654443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=90.47  E-value=4.7  Score=41.73  Aligned_cols=101  Identities=11%  Similarity=0.041  Sum_probs=60.7

Q ss_pred             ceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCcccccc
Q 008450          432 PVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNI  511 (565)
Q Consensus       432 ~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~  511 (565)
                      ...++++-.++++...-..+..+.+..-+.+....+.-|...|+++++.-   ++-+.+.-.+-+..+     --++-..
T Consensus       323 t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl---~lQsilT~iVvd~~g-----~~L~ir~  394 (433)
T KOG3810|consen  323 TQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVAL---ILQSILTLIVVDDRG-----LGLDIRT  394 (433)
T ss_pred             ccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHH---HHHHhheEEEEcccc-----cCCCcce
Confidence            45688888999999888888877777777767777778888888876443   333333333322110     0011111


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHhhhhhh
Q 008450          512 NRGRLDLFYGLLAILSIINLVIYLICAVW  540 (565)
Q Consensus       512 ~~~~~~~~f~~~a~l~lv~~~~~~~~~~~  540 (565)
                      .-.-+...|.+++++-+++....+...++
T Consensus       395 Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~  423 (433)
T KOG3810|consen  395 QFVVYSSYFIVLGVIFLIGFGIEYLMCRR  423 (433)
T ss_pred             eEEEEeehHHHHHHHHHHHHHHHHHHhhc
Confidence            11124455788888888887665555443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=88.44  E-value=34  Score=35.59  Aligned_cols=143  Identities=13%  Similarity=0.028  Sum_probs=79.6

Q ss_pred             cchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCccee
Q 008450          355 AGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVS  434 (565)
Q Consensus       355 ~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  434 (565)
                      ...+........++.+++.+.+.|+++||..         ++..+.+-...+     +...                ..+
T Consensus        71 Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~---------cl~~cily~~sc-----l~k~----------------~~~  120 (354)
T PF05631_consen   71 IAILFVAGFASSAIFGTFVGSLADRYGRKKA---------CLLFCILYSLSC-----LTKH----------------SSN  120 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchHH---------HHHHHHHHHHHH-----HHHh----------------ccc
Confidence            3445566677888999999999998888721         122222222222     1111                346


Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhHhhh-----hccCCchhhHHHHHHHH-HHHHHHHHHhhHHhhhhhhcccCCCCCCccc
Q 008450          435 VFLLIPQFFLVGAGEAFIYTGQLDFF-----ITKSPKGMKTMSTGLFL-TTLSLGFFVSSFLVAVVKKVTGSKGGGGWLA  508 (565)
Q Consensus       435 ~~~li~~~~l~g~g~~~~~~~~~~~~-----~~~~P~~~rg~~~gl~~-~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~  508 (565)
                      ...+++.-++.|++..+.+..--+..     .+-.|++..+...+... ..+.+-.++++.+...+.+..+.        
T Consensus       121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~--------  192 (354)
T PF05631_consen  121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF--------  192 (354)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC--------
Confidence            77888899999999999887655533     23456665555555444 33444445555555444321110        


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 008450          509 DNINRGRLDLFYGLLAILSIINLVIYLICAVWY  541 (565)
Q Consensus       509 ~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~  541 (565)
                           + ....|.....+.+++.++.....+|.
T Consensus       193 -----g-~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  193 -----G-PVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             -----C-CcchHHHHHHHHHHHHHHHHhccccc
Confidence                 0 12345566666666665544444443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=86.26  E-value=29  Score=37.79  Aligned_cols=58  Identities=9%  Similarity=-0.012  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHhhh-hhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 008450          439 IPQFFLVGAGEAFIYT-GQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKK  496 (565)
Q Consensus       439 i~~~~l~g~g~~~~~~-~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~  496 (565)
                      .+.++...+-...+.. ..|.++.|....++..+..+++....++|..+|+.+...+.+
T Consensus       132 ~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       132 ALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555554455554 889999999999999999999999999999999998887653

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=85.66  E-value=53  Score=34.89  Aligned_cols=59  Identities=17%  Similarity=0.132  Sum_probs=45.0

Q ss_pred             eeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHh
Q 008450          433 VSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLV  491 (565)
Q Consensus       433 ~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~  491 (565)
                      .+-+|.+....+.|+..+-.......+..+.+|++.+..+..+..+....|-+.|+.++
T Consensus       341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            34566777777888877777778888888999999888888887777777777766653

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=84.88  E-value=26  Score=35.87  Aligned_cols=42  Identities=12%  Similarity=0.290  Sum_probs=30.9

Q ss_pred             hhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhh
Q 008450          453 YTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVV  494 (565)
Q Consensus       453 ~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l  494 (565)
                      +...+--+.+..+++.|--+++...+..++|..+++.++--+
T Consensus       360 YVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  360 YVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            333344455667778899999999998899888888776443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=83.86  E-value=17  Score=35.10  Aligned_cols=61  Identities=18%  Similarity=0.244  Sum_probs=48.1

Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhHhhhhccCCc-hhhHHHHHHHHH-HHHHHHHHhhHHhhhhh
Q 008450          435 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK-GMKTMSTGLFLT-TLSLGFFVSSFLVAVVK  495 (565)
Q Consensus       435 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~gl~~~-~~~lg~~ig~~l~~~l~  495 (565)
                      ...++...++.+++.+...+....+..+..|+ +.|+...+.... ...+|..+++.+.+.+.
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL  156 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566668888888889999999999998 678998888888 57788888887666654

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=81.69  E-value=55  Score=34.94  Aligned_cols=62  Identities=19%  Similarity=0.175  Sum_probs=50.5

Q ss_pred             eeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 008450          433 VSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK  495 (565)
Q Consensus       433 ~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~  495 (565)
                      .+..++-+..++.|++.+. ..+.++++...+|++.--++++....+.-+|..+++.++..+.
T Consensus        92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv  153 (412)
T PF01770_consen   92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV  153 (412)
T ss_pred             CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777888888887765 6677899999999998889998888888888888888877664

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	565
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		4e-18
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		1e-08

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 111/462 (24%), Positives = 191/462 (41%), Gaps = 59/462 (12%)
Query: 24  ELCERLSTMGIAVNLVTYLVGTM------HLPSATSANIVTDFMGTSFLLCLLGGFLADT 77
           E CER S  G+   L  +L+  +       L  A + ++   F+   +   LLGG++AD 
Sbjct: 21  EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR 80
Query: 78  FLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALY 137
           F G+Y TI   + +  +G   LA+                 H+ +   GF     Y  L+
Sbjct: 81  FFGKYNTILWLSLIYCVGHAFLAIFE---------------HSVQ---GF-----YTGLF 117
Query: 138 LIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXXXISLGTLMAVTVLVYIQDE 197
           LIALG+GG+K  VS F  DQFD+ + K   Q A+        I+ G+  A   +  +   
Sbjct: 118 LIALGSGGIKPLVSSFMGDQFDQSN-KSLAQKAF--DMFYFTINFGSFFASLSMPLLLKN 174
Query: 198 ISRSVGYGICSVAMFMAIIIFLAGTKRYRY-KKSSGSPIVHIFQVIVAAIKKRKMDLPCN 256
              +V +GI  V MF+A + F  G KRY +       P  H F  ++ +    K++   N
Sbjct: 175 FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDP--HGFLPVIRSALLTKVEGKGN 232
Query: 257 VGMLYEDTPEASRIHHTEQFHFLDKAA------IVAEGDFEAGST---PNPWKLCSVTSV 307
           +G++       S  +       L   A      ++  G   AG++       K     +V
Sbjct: 233 IGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAV 292
Query: 308 EEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAIL 367
           + V+ V R+L ++A    FW+ + Q  +  + QA  M +              +F  A++
Sbjct: 293 DGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP------------QWFEPAMM 340
Query: 368 ITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLT 427
             L   + L++ L   +     +  ++RM + L       A  A+     + V     + 
Sbjct: 341 QAL---NPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM 397
Query: 428 TATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 469
                +S+F  I  + L+  GE  +    L+F  +++PK MK
Sbjct: 398 DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 161/410 (39%), Gaps = 97/410 (23%)
Query: 24  ELCERLSTMGIAVNLVTYL-----VGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF 78
           E+ ER S  G+   L+ Y+      G +H+  AT+A+I+  +    +L   +GGF+AD  
Sbjct: 22  EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI 81
Query: 79  LGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYL 138
           +G     A+F        G+L M+  +    P                F    L+ ++ L
Sbjct: 82  IGARP--AVFWG------GVLIMLGHIVLALP----------------FGASALFGSIIL 117
Query: 139 IALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXXXISLGTLMAVTVLVYIQDEI 198
           I +GTG LK +VS      +DE D +     +         I+LG  +A  ++   Q+  
Sbjct: 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFS----IFVFGINLGAFIAPLIVGAAQEAA 173
Query: 199 SRSVGYGICSVAMFMAIIIFLAGTKR-----YRYKKSSGSP-------------IVHIFQ 240
              V + + ++ MF+ ++++  G K+     Y       +P             +     
Sbjct: 174 GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIA 233
Query: 241 VIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWK 300
           +IV         LP  + +L   T  A  I     F+F                    W 
Sbjct: 234 IIVVMNLVGWNSLPAYINLL---TIVAIAI---PVFYF-------------------AWM 268
Query: 301 LCS--VTSVEEVKMVARLLPIWATTIIFWTTYAQ----MITFSVEQATTMERSIGRFQIP 354
           + S  VTS E +++V+  +P++   ++FW    Q    + TF+ E+  +    +  FQ  
Sbjct: 269 ISSVKVTSTEHLRVVSY-IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQ-- 325
Query: 355 AGSLTVFFVSAILITLAVYDRLIMPLWKKW-KGKPGFTNLQRMAIGLVLS 403
             SL   F+        +Y      LW  W K +P  ++  + A+GL+ +
Sbjct: 326 --SLNPLFI-------MLYTPFFAWLWTAWKKNQP--SSPTKFAVGLMFA 364

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	565
2xut_A	524	Proton/peptide symporter family protein; transport	1e-149
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	4e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  437 bits (1126), Expect = e-149
 Identities = 112/540 (20%), Positives = 212/540 (39%), Gaps = 62/540 (11%)

Query: 22  GIELCERLSTMGIAVNLVTYLVGTMH------LPSATSANIVTDFMGTSFLLCLLGGFLA 75
             E CER S  G+   L  +L+  +       L  A + ++   F+   +   LLGG++A
Sbjct: 19  ASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIA 78

Query: 76  DTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIA 135
           D F G+Y TI   + +  +G   LA+                           +   Y  
Sbjct: 79  DRFFGKYNTILWLSLIYCVGHAFLAI-----------------------FEHSVQGFYTG 115

Query: 136 LYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ 195
           L+LIALG+GG+K  VS F  DQFD+ ++    +    F  F+F I+ G+  A   +  + 
Sbjct: 116 LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK---AFDMFYFTINFGSFFASLSMPLLL 172

Query: 196 DEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPC 255
                +V +GI  V MF+A + F  G KRY +             VI +A+  +      
Sbjct: 173 KNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVE-GKG 231

Query: 256 NVGMLYEDTPEAS------RIHHTEQFHFLDKAAIVAEGDFEAGST---PNPWKLCSVTS 306
           N+G++       S       I        L  A ++  G   AG++       K     +
Sbjct: 232 NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAA 291

Query: 307 VEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAI 366
           V+ V+ V R+L ++A    FW+ + Q  +  + QA  M   +         +       +
Sbjct: 292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---VKPQWFEPAMMQALNPLLV 348

Query: 367 LITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGL 426
           ++ +   + ++ P  ++   K   T L++M  G+ ++ +       ++            
Sbjct: 349 MLLIPFNNFVLYPAIERMGVKL--TALRKMGAGIAITGLSWIVVGTIQLMM--------- 397

Query: 427 TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFV 486
                 +S+F  I  + L+  GE  +    L+F  +++PK MK      +  ++++G   
Sbjct: 398 -DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLW 456

Query: 487 SSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKP 546
                  VK  T        +   ++     +F+   A  +I+  +++ + A  Y+ +  
Sbjct: 457 VLLANVSVKSPT---VTEQIVQTGMSVTAFQMFF--FAGFAILAAIVFALYARSYQMQDH 511

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score =  119 bits (301), Expect = 4e-29
 Identities = 97/531 (18%), Positives = 191/531 (35%), Gaps = 84/531 (15%)

Query: 22  GIELCERLSTMGIAVNLVTYLV-----GTMHLPSATSANIVTDFMGTSFLLCLLGGFLAD 76
             E+ ER S  G+   L+ Y+      G +H+  AT+A+I+  +    +L   +GGF+AD
Sbjct: 20  MTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD 79

Query: 77  TFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIAL 136
             +G    +     +  LG  +LA+                              L+ ++
Sbjct: 80  RIIGARPAVFWGGVLIMLGHIVLALPF------------------------GASALFGSI 115

Query: 137 YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD 196
            LI +GTG LK +VS      +DE D +        FS F F I+LG  +A  ++   Q+
Sbjct: 116 ILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG----FSIFVFGINLGAFIAPLIVGAAQE 171

Query: 197 EISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCN 256
                V + + ++ MF+ ++++  G K+               + +   + K  + +   
Sbjct: 172 AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGF 231

Query: 257 VGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCS--VTSVEEVKMVA 314
           + ++       + +       +++   IVA            W + S  VTS E +++V+
Sbjct: 232 IAIIV----VMNLVGWNSLPAYINLLTIVAIAIPVFYFA---WMISSVKVTSTEHLRVVS 284

Query: 315 RLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAG---SLTVFFVSAILITLA 371
             +P++   ++FW    Q        A      +     P     SL   F+    +   
Sbjct: 285 -YIPLFIAAVLFWAIEEQGSVVLATFA---AERVDSSWFPVSWFQSLNPLFI----MLYT 336

Query: 372 VYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATL 431
                   LW  WK     ++  + A+GL+        + L+      +A    L   + 
Sbjct: 337 P---FFAWLWTAWKKN-QPSSPTKFAVGLMF----AGLSFLL------MAIPGALYGTSG 382

Query: 432 PVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLV 491
            VS   L+  + LV  GE  I    L      +PK   +    ++  + S+G  +     
Sbjct: 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL----- 437

Query: 492 AVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYK 542
                          L    N      ++    + S++  ++ +  +   +
Sbjct: 438 ------------NAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 62/442 (14%), Positives = 122/442 (27%), Gaps = 117/442 (26%)

Query: 24  ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYK 83
           E  + +     AV+    L  T+    +    +V  F+    +L +   FL        +
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTL---LSKQEEMVQKFVEE--VLRINYKFLMSPIKTEQR 103

Query: 84  -----TIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYL 138
                T         L      +  K    R +P  +      E           + +  
Sbjct: 104 QPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLELRPA-----KNVLID- 156

Query: 139 IALGTGGL-KSSVSGFGTDQFDE--KDEKEKTQMAYFFSRFF--FFISLGTLMAVTVLVY 193
              G  G  K+ V+        +     K + +M       F  F+++L    +   ++ 
Sbjct: 157 ---GVLGSGKTWVAL-------DVCLSYKVQCKM------DFKIFWLNLKNCNSPETVLE 200

Query: 194 IQDEISRSVGYGICSVAMFMAIIIFLAGTKRYR---------YKKSSGSPIV--HIF--Q 240
           +  ++   +     S +   + I     + +           Y+      +V  ++   +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNVQNAK 257

Query: 241 VIVAAIKKRKMDLPCNVGMLYED-----------TPEASRIHHTEQFH------FLDKAA 283
                      +L C + +               T   S  HH+           L K  
Sbjct: 258 AW------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 284 IVAEGDF--EAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTY-----AQMITF 336
                D   E  +T NP +L          ++A  +     T   W          +I  
Sbjct: 312 DCRPQDLPREVLTT-NPRRLS---------IIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 337 SVEQATTME-RSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQR 395
           S+      E R    F      L+VF  SA  I   +   +       W      +++  
Sbjct: 362 SLNVLEPAEYRK--MFD----RLSVFPPSA-HIPTILLSLI-------WFDVI-KSDVMV 406

Query: 396 MAIGLVLSIVGMAAAALVERKR 417
           +   L          +LVE++ 
Sbjct: 407 VVNKLHKY-------SLVEKQP 421

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 59/462 (12%), Positives = 117/462 (25%), Gaps = 139/462 (30%)

Query: 153 FGTDQFD----EKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICS 208
              ++ D     KD    T           F +L +     V  ++++ +  +  Y    
Sbjct: 46  LSKEEIDHIIMSKDAVSGT--------LRLFWTLLSKQEEMVQKFVEEVLRIN--YK--- 92

Query: 209 VAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS 268
                    FL    +   ++ S    ++I Q           D   N   ++      S
Sbjct: 93  ---------FLMSPIKTEQRQPSMMTRMYIEQR----------DRLYNDNQVFAKYN-VS 132

Query: 269 RIHHTEQFHFLDKAA--------IVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLP-- 318
           R+   + +  L +A         ++ +G   +G      K      V     V   +   
Sbjct: 133 RL---QPYLKLRQALLELRPAKNVLIDGVLGSG------KTWVALDVCLSYKVQCKMDFK 183

Query: 319 -IWAT----------TIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVS--- 364
             W              +      Q+      ++        R       L     S   
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 365 --AILITLAVYDRLIMPLWKKWKGKPGFTNLQ-RMAIGLVLS-----------------I 404
              +L+ L V +      W        F NL  ++   L+ +                  
Sbjct: 244 ENCLLVLLNVQNAKA---WNA------F-NLSCKI---LLTTRFKQVTDFLSAATTTHIS 290

Query: 405 VGMAAAALVERKRLSV-ARAVGLTTATLPVSVFLLIPQFFLVGAGEAFI-YTGQLDFFIT 462
           +   +  L   +  S+  + +      LP  V    P   L    E+        D +  
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNW-- 347

Query: 463 KSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGL 522
           K     K  +             + S L                L     R      +  
Sbjct: 348 KHVNCDKLTTI------------IESSLNV--------------LEPAEYRKM----FDR 377

Query: 523 LAILSI-INLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEE 563
           L++     ++   L+  +W+   K    + +    K S  E+
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	565
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.95
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.94
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.91
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.87
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.28
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.19
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.14
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.04
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.86
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.62
2xut_A	524	Proton/peptide symporter family protein; transport	98.46

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=4.3e-30  Score=277.35  Aligned_cols=433  Identities=20%  Similarity=0.267  Sum_probs=290.1

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhc-----CCCCchhhhhHHHHHHHHHHHHHhhhHHHhhc-cccchhHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGT-----MHLPSATSANIVTDFMGTSFLLCLLGGFLADT-FLGRYKTIAIFAAVQTLGT   96 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~~~~~~~~~~~~~   96 (565)
                      ..++++++++++...+++|+.+.     +|.+..+.+++.+.+.++..++.+++|+++|| + |||+++.++.++..++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~~~~~~~~~~   99 (491)
T 4aps_A           21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVFWGGVLIMLGH   99 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHH
Confidence            78889999999999999999988     99999999999999999999999999999999 8 99999999999999999


Q ss_pred             HHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehh
Q 008450           97 GMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  176 (565)
Q Consensus        97 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (565)
                      ++++++++                        .+.++++|+++|+|.+...+...++++|++|+++.+    |+.+++++
T Consensus       100 ~~~~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~  151 (491)
T 4aps_A          100 IVLALPFG------------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIF  151 (491)
T ss_dssp             HHHHSCCS------------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHHHHHHH
T ss_pred             HHHHHhhh------------------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----ceeeehHH
Confidence            99987733                        667999999999999999999999999999987622    77788889


Q ss_pred             hHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhcccccccc---CCCCC-chHHHHHHHHH--------
Q 008450          177 FFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYK---KSSGS-PIVHIFQVIVA--------  244 (565)
Q Consensus       177 ~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~--------  244 (565)
                      +...++|.++||.+++++.+..|||+.|++.++..++++++.+...++..++   +++.+ +.++..+....        
T Consensus       152 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  231 (491)
T 4aps_A          152 VFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGF  231 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998877766666555443332211   11111 11111110000        


Q ss_pred             ------HHHhccccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHH
Q 008450          245 ------AIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLP  318 (565)
Q Consensus       245 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (565)
                            .....+.                   +..+.................    ...|+. +.....++++......
T Consensus       232 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~  287 (491)
T 4aps_A          232 IAIIVVMNLVGWN-------------------SLPAYINLLTIVAIAIPVFYF----AWMISS-VKVTSTEHLRVVSYIP  287 (491)
T ss_dssp             HHHHHHHHHHSSC-------------------CTTHHHHHHHHHHHHHHHHHH----HHHC-------------CTTHHH
T ss_pred             HHHHHHHHhccCc-------------------ccccchhhhhHHHHHHHHHHH----HHHhhc-ccccHHHHHHHHHHHH
Confidence                  0000000                   000000000000000000000    000000 0000122333333344


Q ss_pred             HHHHHHHHHhhhcccchhhhhhh-hcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHH
Q 008450          319 IWATTIIFWTTYAQMITFSVEQA-TTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMA  397 (565)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~  397 (565)
                      ++.....++..+.+....+.... ...+..    ....+.......+..++..++.+++.|++.+|     +......+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r-----~~~~~~~~~  358 (491)
T 4aps_A          288 LFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN-----QPSSPTKFA  358 (491)
T ss_dssp             HHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC--------CHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhcc-----CCCchHHHH
Confidence            44445555555555444322211 111111    13456667777888888888899988877766     334556677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHH
Q 008450          398 IGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFL  477 (565)
Q Consensus       398 ~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~  477 (565)
                      .|.++..+++.++.+.....          ..+...+.+++++.+++.+++.....+..++++.|.+|++.||+++|+.+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~  428 (491)
T 4aps_A          359 VGLMFAGLSFLLMAIPGALY----------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWF  428 (491)
T ss_dssp             HHHHHHHHHHTTTHHHHHHC----------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc----------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            88888888887776543210          00113467778888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 008450          478 TTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPK  544 (565)
Q Consensus       478 ~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~  544 (565)
                      +...+|..+++.+.+.+.+.                 ++...|++.++++++..++.+...++.+++
T Consensus       429 ~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          429 LSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998876421                 124567888888888887777776655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=5.4e-30  Score=279.06  Aligned_cols=473  Identities=22%  Similarity=0.368  Sum_probs=285.9

Q ss_pred             hhhHHHHHHHhHHHHHHHHHHhhhcCC------CCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHH
Q 008450           21 TGIELCERLSTMGIAVNLVTYLVGTMH------LPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL   94 (565)
Q Consensus        21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~   94 (565)
                      ...+++.+++++++...++.|+++++|      ++..+.+++.+.+.++..++.+++|+++||++|||+++.++.++..+
T Consensus        18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~   97 (524)
T 2xut_A           18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV   97 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            348899999999999999999999999      99999999999999999999999999999966999999999999999


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcce--
Q 008450           95 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF--  172 (565)
Q Consensus        95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--  172 (565)
                      +.++++++.                       .+.+.++++|++.|++.+...+...+++.|++|+++      |+++  
T Consensus        98 ~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~  148 (524)
T 2xut_A           98 GHAFLAIFE-----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQK  148 (524)
T ss_dssp             HHHHHHHTS-----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHHH
T ss_pred             HHHHHHHhc-----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHHH
Confidence            999988873                       027789999999999999999999999999999988      7654  


Q ss_pred             -eehhhHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccc
Q 008450          173 -FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKM  251 (565)
Q Consensus       173 -~~~~~~~~~lg~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (565)
                       +++.+...++|.++||.+++++.+..||++.|++.+++.+++.++.+...++.++++|++++..+..+.+....++++.
T Consensus       149 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (524)
T 2xut_A          149 AFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVE  228 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhc
Confidence             4448888999999999999999988999999999888777666655554444333222222211111111111111100


Q ss_pred             cCCCCcCccccCCcc---ccccCCCcchhHHhHHHHhhcCCCCCCCCCCCC-------ccccchhhHhHhHHHhHHHHHH
Q 008450          252 DLPCNVGMLYEDTPE---ASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPW-------KLCSVTSVEEVKMVARLLPIWA  321 (565)
Q Consensus       252 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  321 (565)
                      ..+ ...........   .....+......+........... +...+.+|       ..++....+++++.......+.
T Consensus       229 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (524)
T 2xut_A          229 GKG-NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVM-GFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFA  306 (524)
T ss_dssp             THH-HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHH-HHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHT
T ss_pred             ccC-ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhh-cccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHH
Confidence            000 00000000000   000000000000000000000000 00000001       0001111223344444444444


Q ss_pred             HHHHHHhhhcccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHH
Q 008450          322 TTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLV  401 (565)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~  401 (565)
                      ....++..+.+..+.+..+....+...  + .+.+.+...+.+..++..++.+++..+..+|..+  +.+..+.+.+|.+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  381 (524)
T 2xut_A          307 LVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV--KLTALRKMGAGIA  381 (524)
T ss_dssp             TSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC--------------CCHHHHHTHHH
T ss_pred             HHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC--CCChHHHHHHHHH
Confidence            445555555555554444433332221  1 2445566666677777778887775444444322  2445566778888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHH
Q 008450          402 LSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLS  481 (565)
Q Consensus       402 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~  481 (565)
                      +.+++++++.+.....          +++...+.+++++.+++.+++++...+..++++.|.+|++.||+++|+.++...
T Consensus       382 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  451 (524)
T 2xut_A          382 ITGLSWIVVGTIQLMM----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVT  451 (524)
T ss_dssp             HHHHHHHTTTTTTTTT----------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHH
T ss_pred             HHHHHHHHHHHHHHHh----------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHH
Confidence            8888877665431100          001134667788899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHhhhhhhcccCCCCCCcccc-ccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 008450          482 LGFFVSSFLVAVVKKVTGSKGGGGWLAD-NINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKK  545 (565)
Q Consensus       482 lg~~ig~~l~~~l~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~  545 (565)
                      +|+.+++.+.+.+.+..+    .+|.++ +.+.  ....|++.+++++++.+++++..+++++++
T Consensus       452 ~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (524)
T 2xut_A          452 VGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQD  510 (524)
T ss_dssp             HHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            999999999998753211    123221 1111  122377888888888888777766655443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.95  E-value=1.5e-26  Score=245.91  Aligned_cols=379  Identities=7%  Similarity=-0.044  Sum_probs=247.0

Q ss_pred             HHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHH----HhhhcccCCC
Q 008450           36 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAM----VTKLRQLRPR  111 (565)
Q Consensus        36 ~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~  111 (565)
                      ....+++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.+++++    +.+       
T Consensus        48 ~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-------  118 (451)
T 1pw4_A           48 ALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATSS-------  118 (451)
T ss_dssp             HHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHSS-------
T ss_pred             HHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhcccc-------
Confidence            44455666788 9999999999999999999999999999999 9999999999999999999998    632       


Q ss_pred             CCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHH
Q 008450          112 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  191 (565)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~  191 (565)
                                       ++.++++|+++|++.+...+...+++.|++|+++      |++++++.....++|.++||.++
T Consensus       119 -----------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~  175 (451)
T 1pw4_A          119 -----------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLF  175 (451)
T ss_dssp             -----------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             -----------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHH
Confidence                             6679999999999999999999999999999888      99999999999999999999999


Q ss_pred             HHhccccc-chhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCcccccc
Q 008450          192 VYIQDEIS-RSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRI  270 (565)
Q Consensus       192 g~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (565)
                      +++.+..| ||+.|++.+++.++..++.++..++.+++....+..+              .  ...    ..     ...
T Consensus       176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~----~~-----~~~  230 (451)
T 1pw4_A          176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE--------------Y--KND----YP-----DDY  230 (451)
T ss_dssp             HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT--------------T--CCC--------------
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh--------------h--ccc----cc-----ccc
Confidence            99888888 9999999887766655544443332211110000000              0  000    00     000


Q ss_pred             CCCcchhHHhHHHHhhcCCCCCCCCCCCCccc-cchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhccccccc
Q 008450          271 HHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLC-SVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG  349 (565)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (565)
                      ...+                   +....++.. .....++++.....+..+......... ....+.+      .....+
T Consensus       231 ~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~g  284 (451)
T 1pw4_A          231 NEKA-------------------EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGI-LDWSPTY------LKEVKH  284 (451)
T ss_dssp             ---------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHH------BTTBSC
T ss_pred             hhhh-------------------hcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHH------HHHhcC
Confidence            0000                   000000000 000011111111111111111111111 1111111      111111


Q ss_pred             ccccCcchhhhhhhHHHHHHHHHhhhhhhhc--cccccCCCCCCchhHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhcCC
Q 008450          350 RFQIPAGSLTVFFVSAILITLAVYDRLIMPL--WKKWKGKPGFTNLQRMAIGLVLSI-VGMAAAALVERKRLSVARAVGL  426 (565)
Q Consensus       350 ~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l--~~r~~~~~~~~~~~~l~~G~~l~~-~~~~~~~~~~~~~~~~~~~~~~  426 (565)
                      ......+.+.....+..++...+.+++.|++  .+|          +.+.++.++.. ++++.+.+..            
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~------------  342 (451)
T 1pw4_A          285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR----------GATGVFFMTLVTIATIVYWMNP------------  342 (451)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH----------HHHHHHHHHHHHHHHHHTTSCC------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----------hhHHHHHHHHHHHHHHHHHHhc------------
Confidence            0111233455556666777777777776665  332          22444444444 4444433210            


Q ss_pred             CCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHH-HHHHhhHHhhhhhhcccCCCCCC
Q 008450          427 TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSL-GFFVSSFLVAVVKKVTGSKGGGG  505 (565)
Q Consensus       427 ~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~l-g~~ig~~l~~~l~~~~~~~~~~~  505 (565)
                           ..+.+.+++..++.+++.....+..+.+..|.+|++.||+++|+.+....+ |..+++.+.+.+.+..      +
T Consensus       343 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g  411 (451)
T 1pw4_A          343 -----AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G  411 (451)
T ss_dssp             -----TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C
T ss_pred             -----ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C
Confidence                 124555666777888888888888899999999999999999999999999 9999999999876421      1


Q ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHHhhhhhh
Q 008450          506 WLADNINRGRLDLFYGLLAILSIINLVIYLICAVW  540 (565)
Q Consensus       506 w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~  540 (565)
                                +...|++.+++.+++.++.+...++
T Consensus       412 ----------~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          412 ----------WDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             ----------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                      3567888888888888777665443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.94  E-value=5.8e-27  Score=252.59  Aligned_cols=412  Identities=12%  Similarity=0.046  Sum_probs=234.4

Q ss_pred             CchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcchh
Q 008450           49 PSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQ  128 (565)
Q Consensus        49 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (565)
                      +..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.+++++++++......      .....+....-..+
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~------~~~~~~~~~~~a~~  125 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTS------INPDNTVPVYLAGY  125 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSC------SSSSSSCCGGGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhh------hcchhHHHHHHhhh
Confidence            345678999999999999999999999999 99999999999999999999864210000      00000000001135


Q ss_pred             HHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHhccc--------ccc
Q 008450          129 MGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE--------ISR  200 (565)
Q Consensus       129 ~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l~~~--------~gw  200 (565)
                      .+.++++|+++|+|.|+..+..+.+++|..|+++      |++..++.+....+|.++++.++..+...        .+|
T Consensus       126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  199 (491)
T 4gc0_A          126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW  199 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence            8889999999999999999999999999999999      99999999999999999998887766542        346


Q ss_pred             hhhHHHHHHHHHHHHHHHHhcc--ccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCCcchhH
Q 008450          201 SVGYGICSVAMFMAIIIFLAGT--KRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHF  278 (565)
Q Consensus       201 ~~~f~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (565)
                      |+.+.+..+..++.++..+..+  |++...+.+.   ++..+.+.....+....               .  ...+....
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~---~~a~~~l~~~~~~~~~~---------------~--~~~~~~~~  259 (491)
T 4gc0_A          200 RYMFASECIPALLFLMLLYTVPESPRWLMSRGKQ---EQAEGILRKIMGNTLAT---------------Q--AVQEIKHS  259 (491)
T ss_dssp             HHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCH---HHHHHHHHHHHHHHHHH---------------H--HHHHHHHH
T ss_pred             HHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCch---hHHHHhHHHhcCCchhH---------------H--HHHHHHHH
Confidence            7666665554444333322221  1111111111   11111111111000000               0  00000000


Q ss_pred             HhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccc--hhhhhhhhcccccccccccCcc
Q 008450          279 LDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMI--TFSVEQATTMERSIGRFQIPAG  356 (565)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  356 (565)
                      .+..  .+..              .......+++.......  .....+.......  .....+.  ....    .....
T Consensus       260 ~~~~--~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~  315 (491)
T 4gc0_A          260 LDHG--RKTG--------------GRLLMFGVGVIVIGVML--SIFQQFVGINVVLYYAPEVFKT--LGAS----TDIAL  315 (491)
T ss_dssp             HHHH--HHHT--------------THHHHSCCTHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHH--SSCC----HHHHH
T ss_pred             HHhh--hhhh--------------hHHHHhcccHHHHHHHH--HHHHHHhhhhHHHhcchHHHHh--cCCC----ccchh
Confidence            0000  0000              00000011111111111  0000000000000  0011111  1000    11112


Q ss_pred             hhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcceeeh
Q 008450          357 SLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVF  436 (565)
Q Consensus       357 ~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  436 (565)
                      ....+..+..++...+...+.|+++||          +.+..+...+.+++..++.....               .....
T Consensus       316 ~~~~~~~~~~~~~~~~~~~l~dr~Grr----------~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~  370 (491)
T 4gc0_A          316 LQTIIVGVINLTFTVLAIMTVDKFGRK----------PLQIIGALGMAIGMFSLGTAFYT---------------QAPGI  370 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSH----------HHHHHHHHHHHHHHHHHHHHHHT---------------TCCHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCc----------chhccchHHHHHHHHHHHHHHhc---------------ccchH
Confidence            233344455555666666777776766          23566777777776665544321               11222


Q ss_pred             hhHHHHHHHHHHHH-HhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccccccch
Q 008450          437 LLIPQFFLVGAGEA-FIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGR  515 (565)
Q Consensus       437 ~li~~~~l~g~g~~-~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~~~~~~  515 (565)
                      ..++..++...+.. ...|..+.+..|.+|++.|++++|+.+.++++++++++.+.+.+....       |....   .+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~~~---~~  440 (491)
T 4gc0_A          371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLVAH---FH  440 (491)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHHHH---HT
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhh---hh
Confidence            22233333333333 334777899999999999999999999999999999999888764211       10000   01


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccchhh
Q 008450          516 LDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGIQM  552 (565)
Q Consensus       516 ~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~~~~~~~~  552 (565)
                      ....|++++++++++.++.+++.+|+|+++.||.++.
T Consensus       441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~  477 (491)
T 4gc0_A          441 NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL  477 (491)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred             hhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence            2346889999999999999999999999998775543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.93  E-value=2.6e-24  Score=228.02  Aligned_cols=338  Identities=13%  Similarity=0.115  Sum_probs=226.5

Q ss_pred             HHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008450           33 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  112 (565)
Q Consensus        33 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  112 (565)
                      +....+.+++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.+++......+      
T Consensus        43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~------  115 (438)
T 3o7q_A           43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEIM------  115 (438)
T ss_dssp             HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred             HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhccccc------
Confidence            3455566678889999999999999999999999999999999999 999999999999999999983321112      


Q ss_pred             CCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHH
Q 008450          113 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  192 (565)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g  192 (565)
                                     +++.++++|++.|+|.|...+...+++.|++|+++      |++++++.+...++|.++||.+++
T Consensus       116 ---------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~  174 (438)
T 3o7q_A          116 ---------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ---------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           38889999999999999999999999999999999      999999999999999999999999


Q ss_pred             Hhc-cccc-------------------------chhhHHHHHHHHHHHHHHHHhcc-ccccccCCCCCchHHHHHHHHHH
Q 008450          193 YIQ-DEIS-------------------------RSVGYGICSVAMFMAIIIFLAGT-KRYRYKKSSGSPIVHIFQVIVAA  245 (565)
Q Consensus       193 ~l~-~~~g-------------------------w~~~f~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  245 (565)
                      ++. +..+                         ||+.|++.++..++..++.+... |+.+++++++++..         
T Consensus       175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---------  245 (438)
T 3o7q_A          175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQG---------  245 (438)
T ss_dssp             HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTT---------
T ss_pred             HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccc---------
Confidence            988 5554                         99999877666555444433321 21111000000000         


Q ss_pred             HHhccccCCCCcCccccCCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHH
Q 008450          246 IKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTII  325 (565)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (565)
                                                 .....+   .                      +..++++........+.....
T Consensus       246 ---------------------------~~~~~~---~----------------------~~~~~~~~~~~~~~~~~~~~~  273 (438)
T 3o7q_A          246 ---------------------------SFSASL---S----------------------RLARIRHWRWAVLAQFCYVGA  273 (438)
T ss_dssp             ---------------------------SHHHHH---H----------------------HHTTCSHHHHHHHHHHHHHHH
T ss_pred             ---------------------------chhhhH---H----------------------HHHhChHHHHHHHHHHHHHHH
Confidence                                       000000   0                      000111111111111122111


Q ss_pred             HHhhhcccchhhhhhhhcccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHH
Q 008450          326 FWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIV  405 (565)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~  405 (565)
                      ......+.+..+..+....+      ....+.+..+..+..++...+.+++.|++.+|          +.+.++.++..+
T Consensus       274 ~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~----------~~~~~~~~~~~~  337 (438)
T 3o7q_A          274 QTACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTWLISRFAPH----------KVLAAYALIAMA  337 (438)
T ss_dssp             HHHHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH----------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHH
Confidence            11111112111022211111      11233445555666667777778887766554          335666666666


Q ss_pred             HHHHHHHHHHHHhhhhhhcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHH
Q 008450          406 GMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFF  485 (565)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~  485 (565)
                      +++.+.+.                    +..+.+...++.+++....+|..+++..|..|++ +++++++.. ...+|..
T Consensus       338 ~~~~~~~~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~  395 (438)
T 3o7q_A          338 LCLISAFA--------------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGG  395 (438)
T ss_dssp             HHHHHHHC--------------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHH
T ss_pred             HHHHHHHc--------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHH
Confidence            66555432                    1123344557788888888999999999999987 999999887 6779999


Q ss_pred             HhhHHhhhhhhc
Q 008450          486 VSSFLVAVVKKV  497 (565)
Q Consensus       486 ig~~l~~~l~~~  497 (565)
                      +++.+.+.+.+.
T Consensus       396 ~~~~~~g~l~~~  407 (438)
T 3o7q_A          396 IVTPVMGFVSDA  407 (438)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.91  E-value=4.5e-24  Score=221.93  Aligned_cols=341  Identities=12%  Similarity=0.036  Sum_probs=224.3

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVT  103 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~  103 (565)
                      .++..+......+.+ +.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++++++
T Consensus         9 ~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~   86 (375)
T 2gfp_A            9 VAVGQMAQTIYIPAI-ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTTS   86 (375)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhh-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhc
Confidence            344444444344444 445778999999999999999999999999999999999 999999999999999999998884


Q ss_pred             hhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHH
Q 008450          104 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLG  183 (565)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg  183 (565)
                      +                        .+.++++|++.|++.+...+...+++.|++|+++      |++++++.....++|
T Consensus        87 ~------------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g  136 (375)
T 2gfp_A           87 S------------------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVS  136 (375)
T ss_dssp             H------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHH
T ss_pred             c------------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHH
Confidence            3                        7789999999999999999999999999999988      999999999999999


Q ss_pred             HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccC
Q 008450          184 TLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYED  263 (565)
Q Consensus       184 ~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (565)
                      ..++|.+++++.+..+||+.|++.++..++..+......|+   +++.+++.                  +         
T Consensus       137 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------------~---------  186 (375)
T 2gfp_A          137 PLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE---TRPVDAPR------------------T---------  186 (375)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC---CSTTTCCC------------------C---------
T ss_pred             HHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc---cCCCCccc------------------c---------
Confidence            99999999999998999999998777655544322222221   11110000                  0         


Q ss_pred             CccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhhc
Q 008450          264 TPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATT  343 (565)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (565)
                                                    +...++    .+..++++.....+..+.............+ .+..+..+
T Consensus       187 ------------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g  231 (375)
T 2gfp_A          187 ------------------------------RLLTSY----KTLFGNSGFNCYLLMLIGGLAGIAAFEACSG-VLMGAVLG  231 (375)
T ss_dssp             ------------------------------CTTTCS----THHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-CSSHHHHH
T ss_pred             ------------------------------cHHHHH----HHHhcCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhC
Confidence                                          000000    0111222222211111121111111111111 22221111


Q ss_pred             ccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHH-HHHHHHHHHHHHHHHhhhhh
Q 008450          344 MERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVL-SIVGMAAAALVERKRLSVAR  422 (565)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l-~~~~~~~~~~~~~~~~~~~~  422 (565)
                      .+      ....+.+.....+..++...+.+++.+|..+            ++..+..+ ...+...+......      
T Consensus       232 ~~------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~------------~~~~~~~~~~~~~~~~~~~~~~~------  287 (375)
T 2gfp_A          232 LS------SMTVSILFILPIPAAFFGAWFAGRPNKRFST------------LMWQSVICCLLAGLLMWIPDWFG------  287 (375)
T ss_dssp             HH------HHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH------------HHHHHHHHHHHTSSSSSHHHHHH------
T ss_pred             CC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhc------
Confidence            11      1112334444555555565655555333221            23344433 22332221111100      


Q ss_pred             hcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 008450          423 AVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK  495 (565)
Q Consensus       423 ~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ig~~l~~~l~  495 (565)
                               ..+.+..+...++.+++.+...+....+..|..| +.||++.|+.+....+|..+++.+.+.+.
T Consensus       288 ---------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  350 (375)
T 2gfp_A          288 ---------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP  350 (375)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred             ---------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     1234455667788899999999999999999999 78999999999999999999999888764

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.87  E-value=2e-22  Score=213.66  Aligned_cols=386  Identities=11%  Similarity=0.044  Sum_probs=220.1

Q ss_pred             HHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHH---HHH
Q 008450           26 CERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGML---AMV  102 (565)
Q Consensus        26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~---a~~  102 (565)
                      +...++....+.++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++..+..++....   +++
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~   96 (417)
T 2cfq_A           18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFG   96 (417)
T ss_dssp             HHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444557899999999999999999999999999999999999999999 99999999888776543222   222


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      ..+                       ...+..++.+.+++.|...+...+...++.++..    ++++..++..+...++
T Consensus        97 ~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~  149 (417)
T 2cfq_A           97 PLL-----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRARMFGCV  149 (417)
T ss_dssp             HHH-----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCHHHHSSSTTT
T ss_pred             HHH-----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccchHHHHHHHHH
Confidence            110                       0012344555555555544444455544443221    1267777777777899


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYE  262 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (565)
                      |..++|.+++++.+ .+|++.|++.++..++..+..+...+    ++++..+.                  ++..+    
T Consensus       150 g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~----~~~~~~~~------------------~~~~~----  202 (417)
T 2cfq_A          150 GWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKT----DAPSSATV------------------ANAVG----  202 (417)
T ss_dssp             HHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCC----CCSCSSCS------------------SSSSS----
T ss_pred             HHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCc----cccccccc------------------ccccc----
Confidence            99999999999876 68999998766553333222221111    11100000                  00000    


Q ss_pred             CCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhh
Q 008450          263 DTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQAT  342 (565)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (565)
                           .   ..++....+..                      +..++++.. ............+..+.+....+..+  
T Consensus       203 -----~---~~~~~~~~~~~----------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--  249 (417)
T 2cfq_A          203 -----A---NHSAFSLKLAL----------------------ELFRQPKLW-FLSLYVIGVSCTYDVFDQQFANFFTS--  249 (417)
T ss_dssp             -----S---CCCCCCHHHHH----------------------HHTTCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             -----c---ccccccHHHHH----------------------HHhcCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence                 0   00000000000                      001112211 11111111111111111111111111  


Q ss_pred             cccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008450          343 TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVAR  422 (565)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~  422 (565)
                      ..+.. +......+....++.+..++...+.+++.||+.+|          +.+..+.++.++++..+.+          
T Consensus       250 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~----------~~l~~~~~~~~~~~~~~~~----------  308 (417)
T 2cfq_A          250 FFATG-EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK----------NALLLAGTIMSVRIIGSSF----------  308 (417)
T ss_dssp             TSSSH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHHHHHTT----------
T ss_pred             HHhcc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH----------HHHHHHHHHHHHHHHHHHH----------
Confidence            11100 00000112334444555556667777787776655          2355666666665544432          


Q ss_pred             hcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHH-HHHHHHHHHHHhhHHhhhhhhcccCC
Q 008450          423 AVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL-FLTTLSLGFFVSSFLVAVVKKVTGSK  501 (565)
Q Consensus       423 ~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~lg~~ig~~l~~~l~~~~~~~  501 (565)
                               ..+.+.+++..++.+++.....+..+.++.|..|++.||++.++ ++..+++|+.++|.+.+.+.+.    
T Consensus       309 ---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~----  375 (417)
T 2cfq_A          309 ---------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES----  375 (417)
T ss_dssp             ---------CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH----
T ss_pred             ---------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh----
Confidence                     12334455555666777666667778999999999999999999 5888899999999999987531    


Q ss_pred             CCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 008450          502 GGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKK  545 (565)
Q Consensus       502 ~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~  545 (565)
                                  .++...|.+.+++++++.++.+...+++++.+
T Consensus       376 ------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          376 ------------IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             ------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             ------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence                        12456678888888888877766655544433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.28  E-value=1.3e-11  Score=130.44  Aligned_cols=171  Identities=18%  Similarity=0.114  Sum_probs=142.4

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhcc-ccchhHHHHHHHHHH-HHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF-LGRYKTIAIFAAVQT-LGTGMLA  100 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grr~~~~~~~~~~~-~~~~~~a  100 (565)
                      ..++....++++..+++.|+++.+|++..+.+++.+.+.++..++.++.|+++||+ .|||+.+.++..+.. ++.++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (451)
T 1pw4_A          260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW  339 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence            45566677788889999999988999999999999999999999999999999995 378888877766665 5554443


Q ss_pred             HHhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHH
Q 008450          101 MVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFI  180 (565)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (565)
                      +.   +.                   .+.+.+.+..++.|++.+...+....++.|.+|+++      |++++++.+...
T Consensus       340 ~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~  391 (451)
T 1pw4_A          340 MN---PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFG  391 (451)
T ss_dssp             SC---CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHH
T ss_pred             Hh---cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHHHHH
Confidence            33   10                   136667788888999999998999999999999998      999999999999


Q ss_pred             HH-HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhc
Q 008450          181 SL-GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       181 ~l-g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~  221 (565)
                      ++ |..++|.+.|++.+..||+..|++.+++.+++.++.+..
T Consensus       392 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          392 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99 999999999999999999999998887777666555543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.19  E-value=8.8e-11  Score=123.64  Aligned_cols=159  Identities=16%  Similarity=0.145  Sum_probs=128.1

Q ss_pred             hHHHHHHHhHHHHHHHHHH-hhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTY-LVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAM  101 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~y-l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~  101 (565)
                      ..++.....+++..+++.| +++.+|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~  344 (438)
T 3o7q_A          266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAF  344 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH
Confidence            3455555667777889999 8888899999999999999999999999999999999 9999999999888888777766


Q ss_pred             HhhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHH
Q 008450          102 VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS  181 (565)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (565)
                      .++                        .. ..+..++.|++.+...|...++..|.+|++       ++.+.++.. ...
T Consensus       345 ~~~------------------------~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~  391 (438)
T 3o7q_A          345 AGG------------------------HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTI  391 (438)
T ss_dssp             CCH------------------------HH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTT
T ss_pred             cCC------------------------cH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHH
Confidence            522                        22 334457888999999999999999988854       444455544 456


Q ss_pred             HHHHHHHHHHHHhccccc-chhhHHHHHHHHHHHH
Q 008450          182 LGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAI  215 (565)
Q Consensus       182 lg~~lg~~i~g~l~~~~g-w~~~f~i~~~~~~~~~  215 (565)
                      +|..++|.+.|++.+..| ++..|++.+++.++.+
T Consensus       392 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          392 IGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            999999999999999999 9999998765554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.14  E-value=7.3e-11  Score=124.47  Aligned_cols=157  Identities=11%  Similarity=0.076  Sum_probs=121.1

Q ss_pred             HHHHHHHHhhhcCCC---CchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 008450           34 IAVNLVTYLVGTMHL---PSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP  110 (565)
Q Consensus        34 ~~~~l~~yl~~~l~~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~  110 (565)
                      ....++.|+.+.++.   +..+.+++.+...++..++.++.|+++||+ |||+++.++.++.+++.++.++..       
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T 2cfq_A          239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT-------  310 (417)
T ss_dssp             HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred             HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            334567777765553   244557777777788888999999999999 999999988888777765554431       


Q ss_pred             CCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeeh-hhHHHHHHHHHHHH
Q 008450          111 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR-FFFFISLGTLMAVT  189 (565)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~lg~~  189 (565)
                                       +.+.+.+..++.+++.+...+....+..|.+|++.      |+++.++ ++...++|.+++|.
T Consensus       311 -----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~gp~  367 (417)
T 2cfq_A          311 -----------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSV  367 (417)
T ss_dssp             -----------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHHTH
T ss_pred             -----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHhhh
Confidence                             24556667777777777777777889999999988      9999888 47778899999999


Q ss_pred             HHHHhcccccchhhHHHHHHHHHHHHHHHHhc
Q 008450          190 VLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  221 (565)
Q Consensus       190 i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~  221 (565)
                      ++|++.+..||+..|.+.+++.+++.++.+..
T Consensus       368 l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  399 (417)
T 2cfq_A          368 LAGNMYESIGFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence            99999988899999988877766666554443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.04  E-value=7.4e-10  Score=118.66  Aligned_cols=173  Identities=12%  Similarity=0.022  Sum_probs=131.4

Q ss_pred             HHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHH-----HHHHHHHHHHHHHHHHh
Q 008450           29 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIA-----IFAAVQTLGTGMLAMVT  103 (565)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~~~~~~~~~~~a~~~  103 (565)
                      ..+......++.|..+.++.+..+.+++.+...++..++.++.|++.||+ |||+...     ++..+.+++.++.++..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (491)
T 4aps_A          297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLLMAIPG  375 (491)
T ss_dssp             HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566778888888888878889999999999999999999999999 9886655     66667777766666542


Q ss_pred             hhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHH
Q 008450          104 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLG  183 (565)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg  183 (565)
                      ....               .....+.+.+.++.++.|++.+...+....++.|.+|++.      |+++.++.+...++|
T Consensus       376 ~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g  434 (491)
T 4aps_A          376 ALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSSSVG  434 (491)
T ss_dssp             HHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHHHHH
T ss_pred             HhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHH
Confidence            1100               0111235667788889999999999999999999999999      999999999999999


Q ss_pred             HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhcccc
Q 008450          184 TLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKR  224 (565)
Q Consensus       184 ~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  224 (565)
                      ..+++.+.+++.+ .++...|.+.+++.+++.++.+...++
T Consensus       435 ~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          435 SALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             HHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998876 567778887777766666665555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.86  E-value=3.6e-08  Score=105.37  Aligned_cols=171  Identities=11%  Similarity=0.034  Sum_probs=121.2

Q ss_pred             HHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008450           29 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQL  108 (565)
Q Consensus        29 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~  108 (565)
                      +..+.......+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.+..+....... 
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~~-  367 (491)
T 4gc0_A          290 FVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA-  367 (491)
T ss_dssp             HTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhccc-
Confidence            33334444555666677888888877777888889999999999999999 9999999998888887777665422111 


Q ss_pred             CCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHH
Q 008450          109 RPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV  188 (565)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~  188 (565)
                                       ......+.+..+..+.+. +..|....+.+|.+|.+.      |+++.++.....++|.++++
T Consensus       368 -----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~  423 (491)
T 4gc0_A          368 -----------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVS  423 (491)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHH
Confidence                             111222222222333333 334677789999999999      99999999999999999988


Q ss_pred             HHHHHhcc------cccchhhHHHHHHHHHHHHHHHHhccccc
Q 008450          189 TVLVYIQD------EISRSVGYGICSVAMFMAIIIFLAGTKRY  225 (565)
Q Consensus       189 ~i~g~l~~------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  225 (565)
                      .+.+.+.+      ..++.+.|++.+++++++.+..++..|+.
T Consensus       424 ~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          424 WTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             THHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            87776543      34566788888877777776666655543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.62  E-value=5.6e-09  Score=107.68  Aligned_cols=156  Identities=11%  Similarity=-0.012  Sum_probs=118.4

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHH-HHHHHHHHHHH
Q 008450           24 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV-QTLGTGMLAMV  102 (565)
Q Consensus        24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~~~~~~~a~~  102 (565)
                      .++......+...+++.|+++.+|.+..+.+++.+...++..++.++.|+++||+ ||+  +..+... ...+..+....
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~~~~~~~~~~  284 (375)
T 2gfp_A          208 LIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLAGLLMWIPD  284 (375)
T ss_dssp             HHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHHTSSSSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHh
Confidence            4444556666667777788877899999999999999999999999999999998 773  2333333 23332221211


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      .. +                   ..+.+.+.+..++.|++.+...+....+..|.+| ++      |+++.++.+...++
T Consensus       285 ~~-~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~~~~~  337 (375)
T 2gfp_A          285 WF-G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGGLQNI  337 (375)
T ss_dssp             HH-H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHHHHHH
T ss_pred             hh-c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHHHHHH
Confidence            00 0                   0135667788888999999999999999999987 55      99999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHH
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSV  209 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~  209 (565)
                      |..++|.+.|.+.+..+|+..+.+.++
T Consensus       338 g~~~~~~~~g~l~~~~~~~~~~~~~~~  364 (375)
T 2gfp_A          338 GSGVLASLSAMLPQTGQGSLGLLMTLM  364 (375)
T ss_dssp             HHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            999999999999887788877776443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.46  E-value=1.9e-06  Score=92.77  Aligned_cols=141  Identities=18%  Similarity=0.188  Sum_probs=104.9

Q ss_pred             cchhhhhhhHHHHHHHHHhhhhhhhc-cccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcce
Q 008450          355 AGSLTVFFVSAILITLAVYDRLIMPL-WKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPV  433 (565)
Q Consensus       355 ~~~~~~~~~~~~li~~~l~~~l~~~l-~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (565)
                      .+++.....+...+..++.+++.|++ .+|          +.+.++.++..++.++..+.                  ..
T Consensus        56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----------~~~~~~~~~~~~~~~~~~~~------------------~~  107 (524)
T 2xut_A           56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKY----------NTILWLSLIYCVGHAFLAIF------------------EH  107 (524)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHTTSSCSH----------HHHHHHHHHHHHHHHHHHHT------------------SS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHHHHh------------------cc
Confidence            34556666777777888888888877 554          34677777777777766542                  11


Q ss_pred             eehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHH---HHHHHHHHHHHhhHHhhhhhhcccCCCCCCccccc
Q 008450          434 SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL---FLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADN  510 (565)
Q Consensus       434 s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl---~~~~~~lg~~ig~~l~~~l~~~~~~~~~~~w~~~~  510 (565)
                      +.+.+++..++.|++.+...+...+++.|.+|++.|++..+.   .+....+|..+++.+.+.+...      .+|    
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~g~----  177 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN------FGA----  177 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT------SCH----
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ccH----
Confidence            566777888999999999999999999999999999877777   8888899999999988876531      123    


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008450          511 INRGRLDLFYGLLAILSIINLVIYLICAV  539 (565)
Q Consensus       511 ~~~~~~~~~f~~~a~l~lv~~~~~~~~~~  539 (565)
                            ...|++.+++.+++.++.+...+
T Consensus       178 ------~~~f~~~~~~~~~~~~~~~~~~~  200 (524)
T 2xut_A          178 ------AVAFGIPGVLMFVATVFFWLGRK  200 (524)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHhcc
Confidence                  56677777777776666554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	565
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.91
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.17
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.15

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.3e-26  Score=239.55  Aligned_cols=387  Identities=9%  Similarity=-0.052  Sum_probs=236.6

Q ss_pred             HHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008450           35 AVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK  114 (565)
Q Consensus        35 ~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  114 (565)
                      .+.+.++++ ++|+|..|.|++.+++.++..++.+++|+++||+ |||+++.++.++..++.++++++....+       
T Consensus        44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------  114 (447)
T d1pw4a_          44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS-------  114 (447)
T ss_dssp             HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS-------
T ss_pred             HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhhh-------
Confidence            455667776 5899999999999999999999999999999999 9999999999999999999888643222       


Q ss_pred             CCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHHHHHHHHHHHHHh
Q 008450          115 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI  194 (565)
Q Consensus       115 ~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~lg~~i~g~l  194 (565)
                                   +...++++|++.|++.|...+....+++|++|+++      |++++++.....++|.++++.+++.+
T Consensus       115 -------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_         115 -------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             -------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             -------------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhH
Confidence                         36779999999999999999999999999999998      99999999999999999999988876


Q ss_pred             ccc-ccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCccccCCccccccCCC
Q 008450          195 QDE-ISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHT  273 (565)
Q Consensus       195 ~~~-~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (565)
                      ... .+||+.|++.+++.++..++.+...++.+++.+.....+                   .. .    +..+......
T Consensus       176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~-~----~~~~~~~~~~  231 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE-------------------YK-N----DYPDDYNEKA  231 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT-------------------TC-C----C---------
T ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh-------------------hh-h----hcccchhhcc
Confidence            654 479999998877766555554444332221111100000                   00 0    0000000000


Q ss_pred             cchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhH-HHHHHHHHHHHhhhcccchhhhhhhhcccccccccc
Q 008450          274 EQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARL-LPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQ  352 (565)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (565)
                      ++                    ....+..........+.+... ...+......+....+. ..+..+      ..+...
T Consensus       232 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~  284 (447)
T d1pw4a_         232 EQ--------------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS-PTYLKE------VKHFAL  284 (447)
T ss_dssp             ------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH-HHHBTT------BSCCCH
T ss_pred             cc--------------------ccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhh-hhhccc------cccccc
Confidence            00                    000000000000011111111 11111111111111111 111111      111001


Q ss_pred             cCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcc
Q 008450          353 IPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLP  432 (565)
Q Consensus       353 ~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (565)
                      ...+....+..+..++...+.+++.|+..++..       .........+..++......                 ...
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----------------~~~  340 (447)
T d1pw4a_         285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-------GATGVFFMTLVTIATIVYWM-----------------NPA  340 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-------HHHHHHHHHHHHHHHHHTTS-----------------CCT
T ss_pred             chhhhhhhcchhhhhhhhhhhhhhhhhcccccc-------ccccchhHHHHHHHHHHHHh-----------------ccc
Confidence            123344555566666677777777666555421       11111122222222111111                 012


Q ss_pred             eeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHHHHHHHH-HHHHhhHHhhhhhhcccCCCCCCcccccc
Q 008450          433 VSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSL-GFFVSSFLVAVVKKVTGSKGGGGWLADNI  511 (565)
Q Consensus       433 ~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~l-g~~ig~~l~~~l~~~~~~~~~~~w~~~~~  511 (565)
                      .+.+..++..++.+++.....+..+.+..|.+|++.||+++|+.++..++ |..+++.+.+.+.+..      +      
T Consensus       341 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~------g------  408 (447)
T d1pw4a_         341 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G------  408 (447)
T ss_dssp             TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------C------
Confidence            34555666777788888888888899999999999999999999988776 5566788888775422      2      


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHhhhhhh
Q 008450          512 NRGRLDLFYGLLAILSIINLVIYLICAVW  540 (565)
Q Consensus       512 ~~~~~~~~f~~~a~l~lv~~~~~~~~~~~  540 (565)
                          +...|++.+++++++.++.+....+
T Consensus       409 ----~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         409 ----WDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             ----SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                2456677777777777666555444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.5e-23  Score=214.38  Aligned_cols=392  Identities=10%  Similarity=0.013  Sum_probs=231.0

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++..+++....+.++.|+++++|+|..|.|++.+++.++..++.++.|+++||+ ||||+++++.....++..+.++.
T Consensus        15 ~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~~~~~~~~   93 (417)
T d1pv7a_          15 FFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIF   93 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHh
Confidence            45555566566677889999999999999999999999999999999999999999 99999999999999888888776


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      ...+.                    .....++.+.+.+.+.+...........+..+++.    +++....+........
T Consensus        94 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  149 (417)
T d1pv7a_          94 IFGPL--------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRARMFGCV  149 (417)
T ss_dssp             THHHH--------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHSCCHHHHHHHHHH
T ss_pred             hhhhh--------------------HHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhHHHHHHHhhhhcc
Confidence            43221                    12223444555555555444444444443333222    2256667777778889


Q ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhccccCCCCcCcccc
Q 008450          183 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYE  262 (565)
Q Consensus       183 g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (565)
                      +..+++.+++++.+ .+|+..+........+..++..+..++.+.++++.++..             +.           
T Consensus       150 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------  204 (417)
T d1pv7a_         150 GWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-------------AN-----------  204 (417)
T ss_dssp             HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH-------------SC-----------
T ss_pred             cccccccccccccc-ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh-------------hh-----------
Confidence            99999999998877 455555555544444443443443332221111110000             00           


Q ss_pred             CCccccccCCCcchhHHhHHHHhhcCCCCCCCCCCCCccccchhhHhHhHHHhHHHHHHHHHHHHhhhcccchhhhhhhh
Q 008450          263 DTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQAT  342 (565)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (565)
                              .......  ...                      .....++............... .........+..   
T Consensus       205 --------~~~~~~~--~~~----------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---  248 (417)
T d1pv7a_         205 --------HSAFSLK--LAL----------------------ELFRQPKLWFLSLYVIGVSCTY-DVFDQQFANFFT---  248 (417)
T ss_dssp             --------CCCCCHH--HHH----------------------HHTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHT---
T ss_pred             --------ccccccc--ccc----------------------cccccccccchhhhhHHHHHHH-Hhhhcccccccc---
Confidence                    0000000  000                      0000000000000111111111 111100001100   


Q ss_pred             cccccccccccCcchhhhhhhHHHHHHHHHhhhhhhhccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008450          343 TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVAR  422 (565)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~l~~~l~~r~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~~~  422 (565)
                      ......+..............+...+...+.+++.+|..+|          +.+.++.++..++.+.+.+          
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~----------~~~~~~~~~~~~~~~~~~~----------  308 (417)
T d1pv7a_         249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK----------NALLLAGTIMSVRIIGSSF----------  308 (417)
T ss_dssp             TSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH----------HHHHHHHHHHHHHHHHHHT----------
T ss_pred             ccccccccchhhhcccccccccccccchhhhhhhhcccccc----------cchhhhHHHHHHhhhcccc----------
Confidence            00000000000112223333444445555555554444433          4467777777777666554          


Q ss_pred             hcCCCCCCcceeehhhHHHHHHHHHHHHHhhhhhHhhhhccCCchhhHHHHHHH-HHHHHHHHHHhhHHhhhhhhcccCC
Q 008450          423 AVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLF-LTTLSLGFFVSSFLVAVVKKVTGSK  501 (565)
Q Consensus       423 ~~~~~~~~~~~s~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~lg~~ig~~l~~~l~~~~~~~  501 (565)
                               ..+.+.+++..++.+++.+...+...+++.|.+|++.||++.|+. ++...+|..+++.+.+.+.+..   
T Consensus       309 ---------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~---  376 (417)
T d1pv7a_         309 ---------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---  376 (417)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---
T ss_pred             ---------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence                     345667777888999999999999999999999999999999985 5667899999999999886432   


Q ss_pred             CCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 008450          502 GGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKK  545 (565)
Q Consensus       502 ~~~~w~~~~~~~~~~~~~f~~~a~l~lv~~~~~~~~~~~~~~~~  545 (565)
                                   ++...|++.++++++..++.++..++.++.+
T Consensus       377 -------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  407 (417)
T d1pv7a_         377 -------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred             -------------CHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence                         1356788888888888888777766554444

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=6.8e-11  Score=121.62  Aligned_cols=172  Identities=18%  Similarity=0.065  Sum_probs=133.6

Q ss_pred             hHHHHHHHhHHHHHHHHHHhhhcCCCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 008450           23 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMV  102 (565)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~  102 (565)
                      ..++.....++...+++.|+.+.++.+..+.++..+.+.+...++.+++|+++||+ +|++..........+........
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  335 (447)
T d1pw4a_         257 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTLVTIATIVY  335 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHHHHHHHHHT
T ss_pred             Hhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHHHHHHHHHH
Confidence            44556667778888899999999999999999999999999999999999999999 88765554444433333332222


Q ss_pred             hhhcccCCCCCCCCCcccccCCcchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehhhHHHHH
Q 008450          103 TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL  182 (565)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  182 (565)
                      ..                   ....+.+...++.++.|++.++..+....+..|.+|++.      |+++.++.+...++
T Consensus       336 ~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~  390 (447)
T d1pw4a_         336 WM-------------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYL  390 (447)
T ss_dssp             TS-------------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHHHH
T ss_pred             Hh-------------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHH
Confidence            11                   111246677778888899999988999999999999988      99999999888776


Q ss_pred             -HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHh
Q 008450          183 -GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  220 (565)
Q Consensus       183 -g~~lg~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~  220 (565)
                       |.+++|.+.|++.+.+||+..|++.+++.+++.++...
T Consensus       391 ~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         391 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence             56778999999999999999998876665555444333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=2.2e-11  Score=122.64  Aligned_cols=145  Identities=11%  Similarity=0.042  Sum_probs=123.5

Q ss_pred             CCCchhhhhHHHHHHHHHHHHHhhhHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccccCCcc
Q 008450           47 HLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASG  126 (565)
Q Consensus        47 ~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (565)
                      +.+..+.+.......++..++..+.+++.||+ |||+++.++.++..++.++..+.+                       
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  310 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT-----------------------  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC-----------------------
T ss_pred             ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc-----------------------
Confidence            44556677778888889999999999999999 999999999999998888887762                       


Q ss_pred             hhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChHhhhhhcceeehh-hHHHHHHHHHHHHHHHHhcccccchhhHH
Q 008450          127 FQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF-FFFISLGTLMAVTVLVYIQDEISRSVGYG  205 (565)
Q Consensus       127 ~~~~~l~i~r~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~lg~~lg~~i~g~l~~~~gw~~~f~  205 (565)
                       +.+.+.+..++.|++.+...+...+++.|.+|++.      |++.++.. .....+|.+++|.+.|++.+.+||+..|+
T Consensus       311 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~  383 (417)
T d1pv7a_         311 -SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL  383 (417)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             -ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence             26778888899999999999999999999999999      99999985 45667999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q 008450          206 ICSVAMFMAIIIFLAGT  222 (565)
Q Consensus       206 i~~~~~~~~~~~~~~~~  222 (565)
                      +.+++.++..++..+..
T Consensus       384 ~~~~~~~~~~~~~~~~l  400 (417)
T d1pv7a_         384 VLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            88877666655544443