Citrus Sinensis ID: 008452

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-----
Protein Sequence
MAAISGKPSAQHPLPSCSSSKELKMMDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPIISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVNKGRPFIVWLYDYLRNPAKKCCCSDHTKSWWHYLKDAKIESFKLIHGQKFNADELHQLIDEWPQVPDGDLQLHLDWCFNDQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccEEEEEEccEEEcccccccccccccEEEEEEEEEcHHHHHHHHHccccccEEEEEEEccccEEEEcccccccEEEEEcccccccEEEEEcccccEEEEEcccccccccEEEccccccccccccccccHHHHHHcccccccccEEEEEEEccEEEEEEccccccEEEEccccccccEEccccccccccccccccccccccccccccEEEccccccccccccccHHHHHccccccEEEEEEEcccccccccccccccccccccEEEEEEEEEEEcccccHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHccccccccccccccccccccccccEEcEEEEccccccccHHHHHHccccccccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHcccccccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccccccEEEcccEEEEEEEcEEccccccccccHHHcEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccccEEEEEEccccEEEEEEEcccccccEEEEcccccEEEEEcccccccccEEEEEccccEEEEcccccEEEEccccHcccccEcHHHHHHHHcccEcccccccEEEEEEEccccccccccccccEEEEEEEcccccccEccccccccEEEEEcccccccEEEEHHHHHHHHcccccEEEEEEccccEEEccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccHccccccccccEcccccEEEccHHHccccEEEHHHHHHHHHccccccccccHEEHHHHcccc
Coil and Loop (DISEMBL)
maaisgkpsaqhplpscssskelKMMDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEkfhssfpildfdqhnfgcladasgHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIgvldpehlppLLDKWIALAIENGvkeldfqilpdikdyvhtytlpqtvfsANFLTHLRLAgckleqpcyAMCFLSLKKLHLYGVYITEQMVQKLLHEchfledlnffECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTlqfpfegqgtpvvdiavcpnlkkfrAFNLLGQEFCTLiskfplledlslfacssferitissnqlkhlSLVHCASLkainidapnllscnfwynpfpiisinsqcswnihfncqddhdggwflnfKDFLRISKKIEELSIDflsnqslfnlykfsrccnslpIQVETLRLRMVltdispseyEILLDGVFWicyprtlslstvnkgrPFIVWLYDYlrnpakkcccsdhtksWWHYLKDAKIESFklihgqkfnaDELHQLIdewpqvpdgdlqlhldwcfndq
Flexible Loop (DISEMBL)
maaisgkpsaqhplpscssSKELKMMDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPIISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLslstvnkgrPFIVWLYDYLRNPAKKCCCSDHTKSWWHYLKDAKIESFKLIHGQKFNADELHQLIDEWPQVPDGDLQLHLDWCFNDQ
Low Complexity Region (SEG)
MAAISGKPSAQHPLPSCSSSKELKMMDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPIISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVNKGRPFIVWLYDYLRNPAKKCCCSDHTKSWWHYLKDAKIESFKLIHGQKFNADELHQLIDEWPQVPDGDLQLHLDWCFNDQ
Disordered region (IsUnstruct)
********************************ISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPIISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVNKGRPFIVWLYDYLRNPAKKCCCSDHTKSWWHYLKDAKIESFKLIHGQKFNADELHQLIDEWPQVPDGDLQLHLDWCF***
Disordered Region (DISOPRED)
**********************************DLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPIISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVNKGRPFIVWLYDYLRNPAKKCCCSDHTKSWWHYLKDAKIESFKLIHGQKFNADELHQLIDEWPQVPDGDLQLHLDWCFN**
Disordered Region (DISEMBL)
****************CSSSKELKMMDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPIISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVNKGRPFIVWLYDYLRNPAKKCCCSDHTKSWWHYLKDAKIESFKLIHGQKFNADELHQLIDEWPQVPDGDLQLHLDWCFNDQ
Disordered Region (DISPRO)
******************************DRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPIISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVNKGRPFIVWLYDYLRNPAKKCCCSDHTKSWWHYLKDAKIESFKLIHGQKFNADELHQLIDEWPQVPDGDLQLHLDWCFNDQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAISGKPSAQHPLPSCSSSKELKMMDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPIISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVNKGRPFIVWLYDYLRNPAKKCCCSDHTKSWWHYLKDAKIESFKLIHGQKFNADELHQLIDEWPQVPDGDLQLHLDWCFNDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	565	2.2.26 [Sep-21-2011]
Q9FM94	421	FBD-associated F-box prot	yes	no	0.304	0.408	0.312	3e-14
Q93ZX6	327	F-box/LRR-repeat protein	no	no	0.327	0.565	0.325	3e-14
Q9LX48	491	Putative F-box/LRR-repeat	no	no	0.353	0.407	0.328	1e-13
Q9LXR6	457	Putative F-box protein At	no	no	0.403	0.498	0.306	3e-13
P0C2G6	507	Putative F-box/LRR-repeat	no	no	0.345	0.384	0.294	3e-13
Q9FJU2	398	Putative FBD-associated F	no	no	0.470	0.668	0.266	3e-13
Q1PED9	388	F-box/LRR-repeat protein	no	no	0.339	0.494	0.311	1e-12
Q9FJ30	540	Putative F-box/LRR-repeat	no	no	0.336	0.351	0.286	1e-12
Q9M3B7	630	Putative F-box/LRR-repeat	no	no	0.323	0.290	0.330	1e-12
Q9FLA2	438	Putative F-box/FBD/LRR-re	no	no	0.309	0.399	0.262	3e-12

>sp|Q9FM94|FBD21_ARATH FBD-associated F-box protein At5g56370 OS=Arabidopsis thaliana GN=At5g56370 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 97/211 (45%), Gaps = 39/211 (18%)

Query: 30  MDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGH 89
           MD IS LP   +  I+S LP K+    S+LSKRW       P L +       L D +  
Sbjct: 1   MDSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWRYLWKLVPKLQYS------LIDKNAD 54

Query: 90  TLNALR-ENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWI 148
               +R  +R     +A  ++++ L L R C+         + IG             W+
Sbjct: 55  HGTFVRFVDRSLLLSMAPVLESLHLKLGRQCS--------EVDIGF------------WV 94

Query: 149 ALAIENGVKELDFQILPDIKDYVHTYT----LPQTVFSANFLTHLRLAGCKLEQPCYAMC 204
            +A+E G+ ELDF       DY H  T    LPQ++F+   LT L+L    L+   + +C
Sbjct: 95  RIAVEKGLCELDF-------DYEHYKTEPCRLPQSLFTCGTLTVLKLKNVSLKDVQFPVC 147

Query: 205 FLSLKKLHL-YGVYITEQMVQKLLHECHFLE 234
           F  LK LHL Y +++ ++  QKLL  C  LE
Sbjct: 148 FKLLKTLHLEYVIFLDKETPQKLLSSCPILE 178

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZX6|FBL57_ARATH F-box/LRR-repeat protein At3g58900 OS=Arabidopsis thaliana GN=At3g58900 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 94/212 (44%), Gaps = 27/212 (12%)

Query: 30  MDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGH 89
           MD  S LP  +++HI+SFL  KEAA  S+LSKRW    +  P L+FD   F         
Sbjct: 1   MDLFSSLPNELLYHILSFLSTKEAALTSVLSKRWRNLFAFVPYLEFDDSVF--------- 51

Query: 90  TLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIA 149
            L+     RE    L  F+D VD  L    +       L+   GV D +H    +D+WI 
Sbjct: 52  -LHPEERKREKEGILQSFMDFVDRVLDLHGDSLIKTFSLKCKTGV-DSDH----VDRWIC 105

Query: 150 LAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCY----AMCF 205
             +  GV +LD  I     D+   Y+LP  V  +  L  LR+     E   Y     +C 
Sbjct: 106 NVLARGVSDLDLFI-----DFRDLYSLPHEVGVSRTLVVLRVGS---ESDLYWWQKFLCL 157

Query: 206 LSLKKLHLYGVYITEQMVQKLLHECHFLEDLN 237
             LK L L   ++     Q LL  C  LE+L+
Sbjct: 158 PMLKTLVLDSCWLCIGQFQILLLACPALEELD 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX48|FBL66_ARATH Putative F-box/LRR-repeat protein At3g59230 OS=Arabidopsis thaliana GN=At3g59230 PE=4 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 111/253 (43%), Gaps = 53/253 (20%)

Query: 31  DRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFD-----QHNFGCLAD 85
           D I+ LP  +I+HI+SFL  KEAA  S+LS++W  F +  P LDFD     Q + G    
Sbjct: 12  DIINSLPEALIYHILSFLSTKEAAITSLLSRKWRYFFAFVPNLDFDDPVRMQPDMGN--- 68

Query: 86  ASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNL-KFSIQKLRIVIGVLDPEHLPPLL 144
                    +E  E  T    F+D V L+L    ++ KFS++    V GV         +
Sbjct: 69  ---------QEETEIHTSFMDFVDRV-LALRGNSHVNKFSLKCGNGVDGV--------GV 110

Query: 145 DKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLR------LAGCKLEQ 198
            +WI   +E  V ELD  I  D      TY  P  VF +  L  LR      LA   L  
Sbjct: 111 TRWILNTLELSVSELDLSIASDT-----TYLFPSKVFVSKSLVRLRIEARNGLAFGSLVI 165

Query: 199 PCYAMCFLSLKKLHLYGVYITEQMV--QKLLHECHFLEDL-------NFFECLGLKLLCI 249
               +    LK L+L  V +  Q++   KLL  CH LE+L       NF+E       C 
Sbjct: 166 DVGDVSLPKLKTLYLDSVELDYQIICLAKLLSGCHVLEELVMIDVVWNFWES------CS 219

Query: 250 SGAHKLKILTMET 262
           +    LK LT  T
Sbjct: 220 ASIPTLKRLTFFT 232

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1

 Score = 77.4 bits (189), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 108/261 (41%), Gaps = 33/261 (12%)

Query: 25  MMDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLA 84
           M  E MD  S LP  +I HI+S LP KEAA  S+L+K+W    +  P LDF+  +F    
Sbjct: 1   MDSEKMDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDF---- 56

Query: 85  DASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLL 144
                 L+     RE    L  F+D VD  L+           L +  GV DP+     +
Sbjct: 57  ------LHPQEGKREKDGILRSFMDFVDRVLALQGASPIKKFSLNVKTGV-DPDR----V 105

Query: 145 DKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLA-GCKLEQPCYAM 203
           D+WI   ++ GV  L         D+   Y+LP  +  +  L  L+   G  L      M
Sbjct: 106 DRWICNVLQRGVSHLAL-----FMDFEEEYSLPYEISVSKTLVELKTGYGVDLYLWDDDM 160

Query: 204 CFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETL 263
               LK L L  V       Q LL  C  LE+        L LL +    +  IL+    
Sbjct: 161 FLPMLKTLVLESVEFGRGQFQTLLPACPVLEE--------LMLLNMEWKDRNVILS---- 208

Query: 264 SSELKGVKIVASSLQQLTLQF 284
           SS LK +KI +      TL F
Sbjct: 209 SSSLKNLKITSEDGCLGTLSF 229

Arabidopsis thaliana (taxid: 3702)

>sp|P0C2G6|FBL71_ARATH Putative F-box/LRR-repeat protein At4g00320 OS=Arabidopsis thaliana GN=At4g00320 PE=4 SV=1

 Score = 77.4 bits (189), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 26/221 (11%)

Query: 24  KMMDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCL 83
           K  D + D IS LP  +I HI+SFLP K AA  ++L+KRW+   +  P LDFD+      
Sbjct: 6   KCFDGSRDGISGLPDAMICHILSFLPTKVAASTTVLAKRWKPLLAFMPNLDFDE------ 59

Query: 84  ADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPL 143
                   +      E R     F+  VD  L+       ++ K  +    ++   +   
Sbjct: 60  ----SFRFDPRMTCEERRKGSESFMLVVDSVLALQAEANATLNKFYVKCEGVEQNSVL-- 113

Query: 144 LDKWIALAIENGVKELDFQILPDIKDYVHT---YTLPQTVFSANFLTHLRL-----AGCK 195
             +WI   ++ GV ++D QI P  + +      Y LP  +F +  L  L++     A   
Sbjct: 114 --EWIPKVLKRGVLDIDLQI-PSSRGFGSNSTFYPLPSEIFVSKTLVRLKIQFQDGANVN 170

Query: 196 LEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDL 236
           +E     +    LK LHL  V +  +M+QKLL  CH LE+L
Sbjct: 171 VEGD---VSLPMLKTLHLDYVKMDTRMLQKLLSGCHTLEEL 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJU2|FBD37_ARATH Putative FBD-associated F-box protein At5g56700 OS=Arabidopsis thaliana GN=At5g56700 PE=2 SV=2

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 135/327 (41%), Gaps = 61/327 (18%)

Query: 30  MDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDF---DQHNFGCLADA 86
           M +ISDL   ++  I+SFLP KEA   S LSK+WE        L+F   D     CL D 
Sbjct: 1   MAKISDLSDELLVKILSFLPTKEAVSTSCLSKQWEFLWMWLSKLEFYFSDGSESACLRDF 60

Query: 87  SGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDK 146
               L   +         A  I+++     RFC+   S+Q              P  L  
Sbjct: 61  IAKNLPLHK---------APIIESL-----RFCSFFGSLQ--------------PKDLKS 92

Query: 147 WIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFL 206
           W+ +A+   V+EL       + D     +LP ++++   L  L+L G K+        FL
Sbjct: 93  WVRIAVSRCVRELSIS----LHDTTAAVSLPSSLYTCKSLVTLKLYGKKVLLDVPRTVFL 148

Query: 207 -SLKKLHLYGV-YITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS 264
            SLK L L  + Y  E  ++ LL  C  LEDL+                      +    
Sbjct: 149 PSLKTLQLERLRYSDEDSLRLLLSYCPVLEDLSI---------------------VREDY 187

Query: 265 SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPL 324
             L+ + ++  SLQ+L+L+ P  G  +    + V P+LK F+  +   +    LI + P 
Sbjct: 188 DNLRALVVIVPSLQRLSLEIP--GNCSSDGYVIVTPSLKYFKVVD-YRESMSYLIEQMPE 244

Query: 325 LEDLSLFACSSFERITISSNQLKHLSL 351
           LE+  +      E++  S    K LS+
Sbjct: 245 LEEADIVVLQYPEKLLESVTFFKRLSI 271

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PED9|FBL63_ARATH F-box/LRR-repeat protein At3g59190 OS=Arabidopsis thaliana GN=At3g59190 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 99/218 (45%), Gaps = 26/218 (11%)

Query: 24  KMMDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCL 83
           +M   + D IS+LP  ++ H++SFLP  EAA  S+L+KRW    +  P LD D   +   
Sbjct: 5   RMDSGSKDIISNLPDALLCHVLSFLPTTEAASTSVLAKRWRFLLAFVPNLDLDNMIY--- 61

Query: 84  ADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNL-KFSIQKLRIVIGVLDPEHLPP 142
                      R+  E R     F+D V ++L     L KFS   LR  IG  DP     
Sbjct: 62  ----DRPKMGRRKRLELRKSFKLFVDRV-MALQGNAPLKKFS---LRCKIGS-DPSR--- 109

Query: 143 LLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYA 202
            ++ W+   ++ GV+ELD  I  +     + Y LP  V     L  L+++G         
Sbjct: 110 -VNGWVLKVLDRGVEELDLYIASE-----YEYPLPPKVLMTKTLVSLKVSGTDEFTIDVG 163

Query: 203 MCFL-SLKKLHLYGVYITEQM---VQKLLHECHFLEDL 236
             FL  LK LHL  +   ++      KL+  CH LE+L
Sbjct: 164 EFFLPKLKTLHLSAISFGDEGGPPFAKLISACHALEEL 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana GN=At5g41840 PE=4 SV=1

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 23/213 (10%)

Query: 31  DRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHT 90
           DRIS LP  +I HI+SFLP KEAA  ++L+KRW+   +  P L+FD   +          
Sbjct: 14  DRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIY---------- 63

Query: 91  LNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVI-GVLDPEHLPPLLDKWIA 149
            +      ++      F+  VD  L+     K  +++  +    V+D   +     +WI 
Sbjct: 64  FHPRARRNKYSKSYESFMSFVDSVLALQAKTKTPLKRFHVKCEDVVDQSWVL----EWIP 119

Query: 150 LAIENGVKELDFQILPDIKDYVHT---YTLPQTVFSANFLTHLRLA---GCKLEQPCYAM 203
             ++ GV ++D  I    ++Y      Y+LP  +F +  L  L++    G  ++     +
Sbjct: 120 KVLKRGVLDIDLHITSS-RNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVEG-GV 177

Query: 204 CFLSLKKLHLYGVYITEQMVQKLLHECHFLEDL 236
               LK LHL    I   M+ KLL  CH LE+L
Sbjct: 178 SLPKLKTLHLDYFKIETSMLNKLLSGCHALEEL 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M3B7|FBL54_ARATH Putative F-box/LRR-repeat protein At3g49150 OS=Arabidopsis thaliana GN=At3g49150 PE=4 SV=2

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 100/209 (47%), Gaps = 26/209 (12%)

Query: 31  DRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHT 90
           D ISDLP  +I HI+SFLP +++A  S+LSK+W+   +  P L+FD        DA  + 
Sbjct: 16  DIISDLPEALICHILSFLPIEDSALTSVLSKKWQHLFAFRPNLEFD--------DAVVY- 66

Query: 91  LNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIAL 150
           LN   E  E  T    F+D V LSL       + I K  +          P  + +WI+ 
Sbjct: 67  LNPDGERNE--TIFENFVDRV-LSLQG----DYPINKFSLTCRDFTD---PTCVSRWISN 116

Query: 151 AIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFL-SLK 209
            +E GV +LD + +     Y    T+P  +F +  L HLR+             FL +LK
Sbjct: 117 VMERGVSDLDLRCIV----YWDNGTMPPDIFVSKALVHLRIETGNGAFIDVEDVFLPNLK 172

Query: 210 KLHLYGVYI--TEQMVQKLLHECHFLEDL 236
            L+L  V +  ++    KL+  CH LEDL
Sbjct: 173 TLYLNKVLLRHSDNGFVKLITSCHVLEDL 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLA2|FDL34_ARATH Putative F-box/FBD/LRR-repeat protein At5g44950 OS=Arabidopsis thaliana GN=At5g44950 PE=4 SV=1

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 38/213 (17%)

Query: 31  DRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHT 90
           DRIS+LP  +++HI+ +L  +E+ R S+LS RW K     P LD + H+F     A G+ 
Sbjct: 4   DRISELPDGLLNHILMYLHIEESIRTSVLSSRWRKLWLKVPGLDVNVHDFP----ADGNL 59

Query: 91  LNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDK---W 147
                    F + + +F+   +++  R  N K + +            +L  L+D+   W
Sbjct: 60  ---------FESLMDKFL---EVNRGRLQNFKLNYE-----------SNLYYLMDRFVPW 96

Query: 148 IALAIENGVKELDFQIL---PDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMC 204
           IA  ++ G++ LD       P   D+     +P  +  +  L  L+L    L+ P + + 
Sbjct: 97  IATVVDRGIQHLDVTATDCPPWTIDF-----MPANICKSKTLVSLKLVNVGLDTPKFVVS 151

Query: 205 FLSLKKLHLYGVYITEQMVQKLLHECHFLEDLN 237
              LK +HL  ++ +  + + L+  C  LEDL 
Sbjct: 152 LPCLKIMHLEDIFYSPLIAENLISGCPVLEDLT 184

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	565
224121624	528	predicted protein [Populus trichocarpa]	0.846	0.905	0.330	9e-60
225442254	520	PREDICTED: putative F-box protein At3g44	0.823	0.894	0.321	9e-43
297743071	552	unnamed protein product [Vitis vinifera]	0.826	0.846	0.320	9e-43
147833276	521	hypothetical protein VITISV_011919 [Viti	0.826	0.896	0.308	3e-40
357503353	557	F-box/LRR-repeat protein [Medicago trunc	0.828	0.840	0.303	4e-36
224119688	563	f-box family protein [Populus trichocarp	0.854	0.857	0.294	5e-35
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.762	0.918	0.288	1e-33
356557323	833	PREDICTED: uncharacterized protein LOC10	0.592	0.402	0.350	2e-33
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.762	0.918	0.286	6e-33
357454743	761	Agglutinin alpha chain [Medicago truncat	0.826	0.613	0.299	8e-33

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 170/514 (33%), Positives = 274/514 (53%), Gaps = 36/514 (7%)

Query: 30  MDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGH 89
           MD IS  P  ++HHI+SFLP K+  R SILSKRW+    ++PILDF   ++G  A  S  
Sbjct: 1   MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDF---SWGDCAGQSSD 57

Query: 90  TLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIA 149
            + +   + E+R  L +F++ VD S+ RFC  KFS+QK ++ + + D E L   LDKW+ 
Sbjct: 58  AMYSENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFLVLPDLE-LSSHLDKWVQ 116

Query: 150 LAIENGVKELDFQILPDIKDYVH---TYTLPQTVFSANFLTHLRLAGC--KLEQPCYAMC 204
             IENG KE+DF I  D+  Y+H    Y++P  +F+A  +T L+L GC  KLE+  + + 
Sbjct: 117 KVIENGAKEVDFGI--DLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKLEES-FCIK 173

Query: 205 FLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS 264
             SL+KL L  V + + ++++++  C  LED++   C GLK + +    +LK   + +  
Sbjct: 174 LHSLQKLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIYSHL 233

Query: 265 SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCT------L 318
           S+ + V+I + SL+     F       P+V +  C  LK      +L   F T      L
Sbjct: 234 SKPESVEIKSPSLESFHCSFTVRSV-KPIVSVDACQGLKSL----ILSGSFVTELLLQDL 288

Query: 319 ISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFP 378
           + KF +LE L +  C   +++ ISS +LK L +  C ++  I I+ PNLLSC +  +  P
Sbjct: 289 VPKFHVLESLRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSVVP 348

Query: 379 IISINS-QCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSI-DFLSN-QSLFNLYKF 435
           +  IN+  C W + F+  +  D  W++  K+FL    ++  L +  +L+   S  NL   
Sbjct: 349 VSLINAPSCHWQVEFSLMNTLDILWYMTLKEFLAKLNQLVYLHVYVYLTTIMSSLNLEDL 408

Query: 436 SRCCNSLPIQVETLRLRMVLTDISPS---EYEILLDGVFWICYPRTLSLSTVNKGRPFIV 492
           S   N+ P  V+ +    VLT  S S    Y   +DG+F+   P+ L + + ++ + ++ 
Sbjct: 409 SN--NASPYVVDNV----VLTVHSASPIMTYANFMDGLFFFSRPKNLFIRSTDEQKRYVE 462

Query: 493 WLYDYLRNPAKKCCCSDHTKSWWHYLKDAKIESF 526
           +L  + +  A  CC     K W H LK+ K+ SF
Sbjct: 463 YLCGFSKR-ALSCCNHRKVKCWRHDLKEVKLGSF 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 167/519 (32%), Positives = 255/519 (49%), Gaps = 54/519 (10%)

Query: 26  MDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFH--SSFPILDFDQHNFGCL 83
           M E  DRIS LP  I+  I+S LP KE AR S+LSK W K    SS  +L F   +F   
Sbjct: 1   MVEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDF--- 57

Query: 84  ADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPL 143
                   ++ R+N +    ++ FI+A+D SL R      S+ +L++ + + D E    L
Sbjct: 58  -------FHSRRKNFD----VSSFINAIDSSL-RLRQKDVSLARLQLRLHLNDIES-ESL 104

Query: 144 LDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAM 203
           +D WI  A+E  VKELD  +LP  +     Y LP  +FS   +T L L  C+LE  C  +
Sbjct: 105 IDSWIDAALERKVKELDLYLLP--RSIPEPYGLPAKIFSTTTITVLSLEQCRLE-ICGDV 161

Query: 204 CFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETL 263
              +L+KL L  +   EQ +++L+  C  +EDL+   C  LK L +SG   L  L + T 
Sbjct: 162 DLPALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVV-TC 220

Query: 264 SSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCT------ 317
              L+ ++I A SLQ     F ++ Q + + D+   P   +F    +L     T      
Sbjct: 221 CYNLRRIEIDAPSLQ----YFMYDHQRSLLCDVVWTPG--EFLRELILHDRHITNDLLQN 274

Query: 318 LISKFPLLEDLSLFACSSFERITISSNQLKHLS--LVHCASLKAINIDAPNLLSCNFWYN 375
           L+S  P LE L + + +  +RI IS +QLK L   L        + IDAPNL S  +   
Sbjct: 275 LVSGVPNLERLEIDS-TRLQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGY 333

Query: 376 PFPIISINSQCSWN------IHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSL 429
             P+ S+ S  + +      IHF   +D+   + L  K+F   SK  + +++   S + L
Sbjct: 334 RMPLTSMISSMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEEL 393

Query: 430 FNLYKFSRCCNSLPI-QVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVNKGR 488
               K  R   S P+  ++ L L +       S ++ ++D + W+C+P+TLS+ T  K  
Sbjct: 394 IIPRKL-RPIPSPPVYDIKHLHLIVYYC----SRFQYIIDRMLWMCHPQTLSIETSAK-- 446

Query: 489 PFIVWLYDYLRNPAK--KCCCSDHTKSWWHYLKDAKIES 525
            F+  LY+   N  +  KCC S  TK W HYL+D +I+ 
Sbjct: 447 -FLKVLYNKFSNKEENPKCCTSCPTKCWRHYLEDVQIDG 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 167/521 (32%), Positives = 257/521 (49%), Gaps = 54/521 (10%)

Query: 23  LKMMDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFH--SSFPILDFDQHNF 80
           + +M E  DRIS LP  I+  I+S LP KE AR S+LSK W K    SS  +L F   +F
Sbjct: 30  VSVMVEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDF 89

Query: 81  GCLADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHL 140
                      ++ R+N +    ++ FI+A+D SL R      S+ +L++ + + D E  
Sbjct: 90  ----------FHSRRKNFD----VSSFINAIDSSL-RLRQKDVSLARLQLRLHLNDIES- 133

Query: 141 PPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPC 200
             L+D WI  A+E  VKELD  +LP  +     Y LP  +FS   +T L L  C+LE  C
Sbjct: 134 ESLIDSWIDAALERKVKELDLYLLP--RSIPEPYGLPAKIFSTTTITVLSLEQCRLE-IC 190

Query: 201 YAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTM 260
             +   +L+KL L  +   EQ +++L+  C  +EDL+   C  LK L +SG   L  L +
Sbjct: 191 GDVDLPALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVV 250

Query: 261 ETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCT--- 317
            T    L+ ++I A SLQ     F ++ Q + + D+   P   +F    +L     T   
Sbjct: 251 -TCCYNLRRIEIDAPSLQ----YFMYDHQRSLLCDVVWTPG--EFLRELILHDRHITNDL 303

Query: 318 ---LISKFPLLEDLSLFACSSFERITISSNQLKHLS--LVHCASLKAINIDAPNLLSCNF 372
              L+S  P LE L + + +  +RI IS +QLK L   L        + IDAPNL S  +
Sbjct: 304 LQNLVSGVPNLERLEIDS-TRLQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTY 362

Query: 373 WYNPFPIISINSQCSWN------IHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSN 426
                P+ S+ S  + +      IHF   +D+   + L  K+F   SK  + +++   S 
Sbjct: 363 LGYRMPLTSMISSMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSK 422

Query: 427 QSLFNLYKFSRCCNSLPI-QVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVN 485
           + L    K  R   S P+  ++ L L +       S ++ ++D + W+C+P+TLS+ T  
Sbjct: 423 EELIIPRKL-RPIPSPPVYDIKHLHLIVYYC----SRFQYIIDRMLWMCHPQTLSIETSA 477

Query: 486 KGRPFIVWLYDYLRNPAK--KCCCSDHTKSWWHYLKDAKIE 524
           K   F+  LY+   N  +  KCC S  TK W HYL+D +I+
Sbjct: 478 K---FLKVLYNKFSNKEENPKCCTSCPTKCWRHYLEDVQID 515

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 160/518 (30%), Positives = 248/518 (47%), Gaps = 51/518 (9%)

Query: 26  MDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLAD 85
           M E  DRIS LP  I+  I+  LP K+ AR+S+LS+ W K              F C   
Sbjct: 1   MAEEQDRISHLPDDILIRILGLLPTKDVARSSLLSQAWRKLSPFS---SLSLLMFQC--- 54

Query: 86  ASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLD 145
                L + R+N    T ++ FI+A+D SL R      ++ +LR+ + + D E    L+D
Sbjct: 55  --PDFLESCRKN----TDVSSFINAIDSSL-RLRPKDVNLARLRLHLDLDDIES-ESLID 106

Query: 146 KWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCF 205
            WI  A+E  VKELD  + P  +     Y LP  +FS   +T L L  C+LE  C  +  
Sbjct: 107 SWIDAALERKVKELDLYLRP--RSIAKPYGLPAKIFSTTTITVLSLEQCRLE-ICGDIDL 163

Query: 206 LSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISG---AHKLKILTMET 262
            +L+KL L  +   EQ +++L+  C  +EDL+   C GL+ L +SG    H+L+++    
Sbjct: 164 PALRKLCLRQIRCDEQAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVIC--- 220

Query: 263 LSSELKGVKIVASSLQQLTL---QFPFEGQGTPVVDIAVCPNLKKFRAFN--LLGQEFCT 317
               L+ ++I A SLQ L     + P +   TP      C  L++    +  +       
Sbjct: 221 -CYNLRRIEIDAPSLQHLVYHCGRLPCDMVLTP------CEFLRELILHDPHITNDFLQN 273

Query: 318 LISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLK--AINIDAPNLLSCNFWYN 375
           L S FP LE L + + +  +RI IS +QLK L L      K   + IDAPNL S  +   
Sbjct: 274 LDSGFPNLERLEIDS-TRLQRIEISHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSGY 332

Query: 376 PFPIISINSQCSWN------IHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSL 429
             P+ S  S  + +      IHF   +D+   +    K+F   SK  + +++   S + L
Sbjct: 333 RMPLTSTISSMNTSSLREAEIHFRNYNDYSHFFIPQLKEFFEKSKNCQVINLLIKSKEEL 392

Query: 430 FNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVNKGRP 489
               K     +     ++ L LR+       S ++ ++D + W+C+P+TLS+ +    R 
Sbjct: 393 IIPRKLRPILSPPVYDIKHLYLRVSYC----SRFQYIIDRMLWMCHPQTLSILSGTNVR- 447

Query: 490 FIVWLYDYLRNPAK--KCCCSDHTKSWWHYLKDAKIES 525
           F+  LY+  RN  +  KCC S   K W HYLKD +I+S
Sbjct: 448 FLKVLYNKFRNKEENPKCCTSCSIKCWRHYLKDVQIDS 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503353|ref|XP_003621965.1| F-box/LRR-repeat protein [Medicago truncatula] gi|357503387|ref|XP_003621982.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496980|gb|AES78183.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496997|gb|AES78200.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 161/531 (30%), Positives = 243/531 (45%), Gaps = 63/531 (11%)

Query: 31  DRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHT 90
           DR+S LP  I+HHI+S LP K+AAR S+LSK W     +FPIL    + F      S   
Sbjct: 19  DRLSILPKIILHHILSRLPEKDAARTSVLSKAWADTWFTFPILSISDNKFTGWFPLS--- 75

Query: 91  LNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIAL 150
           ++ ++  R+      +FID V  +LSRFC+   +I++ +I++   +  ++   +D W+  
Sbjct: 76  IDDVKRKRK------KFIDYVTRTLSRFCDQGLAIKECKIILNRFELHYMSKHVDLWLKS 129

Query: 151 AIENGVKELDFQILPDIKDYVHT-----YTLPQTVFSANFLTHLRL-AGCKLEQPCY--A 202
           A  +GV+ ++   LP   +Y+       Y LP  V  A  LT + L  G +++Q     +
Sbjct: 130 ASGSGVEVVEL-CLPCGPNYIEEGHGKCYVLPTGVIEAKSLTKVVLKGGIRVDQAFMNQS 188

Query: 203 MCFLSLKKLHLYGVYIT-EQMVQKLLHECHFLEDLNFFECL------GLKL---LCISGA 252
           + F SL+ L L+ V +  E  ++ L+  C F+E +    C       G+KL   L + G 
Sbjct: 189 IKFFSLRVLSLWIVLLEDEHAIEHLISCCPFIEHITLKHCSVLSPGGGVKLMKSLSMHGL 248

Query: 253 HKLKILTMETLSSELKGVKIVASSLQQL-----TLQFPFEGQGTPVVDIAVCPNLKKFRA 307
            KLK + +  +    + V I   SL+ L      L  P++      +    C NLK    
Sbjct: 249 PKLKTVDVHGI----QEVYIDVPSLEYLYYCHDVLNAPYK------IHFDSCRNLKGLDL 298

Query: 308 FNLLGQE-----FCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINI 362
           F+L G       F  L SKFP LE L    C+  E I ISS QLK L L  C ++K +NI
Sbjct: 299 FSLEGNTITDKWFLELFSKFPFLERLKFVKCTMSETINISSVQLKVLELSGCHNMKEVNI 358

Query: 363 DAPNLLSCNFWYNP---FPIIS-INSQCSWNIHFNCQDDH-DGGWFLNFKDFLRISKKIE 417
           DAPNLLSC +  +     PIIS + S     +      D+ D G   N K+FL+  K   
Sbjct: 359 DAPNLLSCEYIIDTQHLEPIISFVRSSSKLKVDVQIYIDYLDLG---NLKEFLQNIKPEN 415

Query: 418 ELS----IDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWI 473
            L+      F   +  FN   F    +S P  V+ L L       +     + +      
Sbjct: 416 VLTSLSLFIFELTEDEFNPAVFQ--VSSPPPSVKHLHLHTFPKKETLYSSLLSILLSSCC 473

Query: 474 CYPRTLSLSTVNKGRPFIVWLYDYLRNPAKKC-CCSDHTKSWWHYLKDAKI 523
               ++ +      R FI + Y+ L      C C S  T  WWH LK+ K+
Sbjct: 474 FATISMRMHPCFCSREFIEFFYETLMRRKDDCFCSSSDTNCWWHGLKNLKV 524

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 158/537 (29%), Positives = 258/537 (48%), Gaps = 54/537 (10%)

Query: 18  SSSKELKMMDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQ 77
           +++ ++ +  +  DRIS LP  ++H+I+S+L  +   R S+LSK W +  +SFP+ DF +
Sbjct: 22  ATNMDMGIRVDASDRISRLPDHVLHYILSYLSIRAVVRFSVLSKTWHRISTSFPVSDFSE 81

Query: 78  HNFGCLADASGHTLNALRENREFRTCLARFIDAVDLSL--SRFCNLKFSIQKLRIVIGVL 135
                           L +  E +    +FID V  SL      N +    +L + +   
Sbjct: 82  DVL------------LLGKRYEIQDWKNKFIDFVQDSLLAQHHHNTRSHKFRLSMDLDSY 129

Query: 136 DPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAG-C 194
           DP+ L    D  + LA + GV E D     + ++  H Y LP+ + SA  +T LRL G  
Sbjct: 130 DPQ-LTSRADHLLELATKCGVYEFDL----NFQNISH-YCLPRALLSAEEITVLRLNGNY 183

Query: 195 KLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHK 254
           KL  P  A+ + SL+ L L  V + E ++Q L+  C  +E L    C G+K + ISG  K
Sbjct: 184 KLSLPRDAINWPSLRVLSLMNVRVDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIK 243

Query: 255 LKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLK--KFRAFNL-- 310
           LK + +    S L+ ++I   SL+          +    +D+  C NL+  K + +N+  
Sbjct: 244 LKEVEVNEGDSVLERMEIHVPSLRTFCYTTGLV-KSFFHIDMTGCRNLELLKLKFYNITE 302

Query: 311 -LGQEFCTLISKFPLLEDLSLFA-CSSFERITISSNQLKHLSLVHCASLKAINIDAPNLL 368
            +GQ F  LI++FP L+ L+L    +S  RI IS+ QL+ L L   A L  + I +P+L 
Sbjct: 303 VIGQVFQDLIAQFPALKVLALNCYATSVSRIKISNPQLEKLQLWSSA-LTKVTITSPSLH 361

Query: 369 SCNFWYNPFPII-----SINSQCSWNIHFNCQDDHD----GGWFLNFKDFLRISKKIEEL 419
           S   +   FP       S   + + ++H       D      +  NF    R++ +I  +
Sbjct: 362 SFKHFTYGFPSAFSLDQSSLQKATLHVHKGALYSSDFLQLREYLGNFNQIRRLTLRINYV 421

Query: 420 SIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMV-LTDISPS-----EYEILLDGVFWI 473
            I F+  ++L N+        +LP  ++ L+L++   T  S S     +Y  ++DG+ W+
Sbjct: 422 GIRFIP-ETLNNI-----SIPALP-DIKHLKLKICPSTGASGSLANLKDYRDIVDGLLWV 474

Query: 474 CYPRT-LSLSTVNKGRPFIVWLYDYLRNPAKK--CCCSDHTKSWWHYLKDAKIESFK 527
           C+P T L +S  +    FI  L + L    +K  CC S H K W H LKD +IE  +
Sbjct: 475 CHPETILLISGWSSENLFIQILCEKLMQGGEKQHCCTSSHIKCWRHDLKDIQIEHLQ 531

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 140/486 (28%), Positives = 228/486 (46%), Gaps = 55/486 (11%)

Query: 30  MDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNF---GCLADA 86
           MD IS+LP  I+ HI+SFL  K+  + +ILSKRW     +FP  +FD++ F     L + 
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60

Query: 87  SGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDK 146
             H +N + +  +   CL +F    D                       +P  +  ++D+
Sbjct: 61  RFHLINFVEQTLKQLKCLRKFKLHTDFP---------------------EPNSMV-VVDR 98

Query: 147 WIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFL 206
           WI   +E+GV+EL+  +     +    Y LPQ VF+   LT L +  CKL         L
Sbjct: 99  WIDYVLESGVQELEIVV---TVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLL 155

Query: 207 SLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETL-SS 265
           S+K + L GV+  ++ V++L+  C F++ +    CLGL+ L +   ++L  +TME   +S
Sbjct: 156 SMKSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNEL--ITMEVQNNS 213

Query: 266 ELKGVKIVASSLQQLTLQFPFEGQGTP-VVDIAVCPNLK--KFRAFNLLGQEFCTLISKF 322
            L      A +LQ     F F GQ  P  ++I+ C NLK  K     +    F    S+F
Sbjct: 214 GLYEFGTKAMNLQ----AFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEF 269

Query: 323 PLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPIISI 382
           PLLE L+L  C   E + ISS+ LK   L  C S+  ++IDAP L    F  +   +IS 
Sbjct: 270 PLLEILALSYCHMLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEFSGD---VISF 326

Query: 383 NSQCSWNIHFNCQDD-------HDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKF 435
               S N     Q D        D  W +   +FL     ++ L++   + +S+    + 
Sbjct: 327 ----SLNAPALSQADIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQEL 382

Query: 436 SRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWIC-YPRTLSLSTVNKGRPFIVWL 494
                S    V+ L+LR++    SPS  + L+  + WI   P+T+++ +   G+  + ++
Sbjct: 383 RETFGSPLYGVKHLKLRIIKPLFSPSLKD-LVKALLWIAPQPQTIAVES-GFGKKILKFV 440

Query: 495 YDYLRN 500
           Y+  R+
Sbjct: 441 YEKARD 446

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 184/362 (50%), Gaps = 27/362 (7%)

Query: 15  PSCSSSKELKMMDE-TMDRISDLPTFIIHHIMSFLP-AKEAARASILSKRWEKFHSSFPI 72
           P    S E+   D+ ++DRIS  P  +IHHI+S L    +A R S+LSKRW +   S+ +
Sbjct: 143 PGEKDSDEMDTSDDGSVDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSV 202

Query: 73  LDFDQHNFGCLADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVI 132
           L FD+  F   A   GH      E+   +  +  F D V  SL         I+KL + +
Sbjct: 203 LIFDERKF---AAKIGH------EDSSNKGMM--FRDYVSNSLLTSNAKNLQIRKLVLHM 251

Query: 133 GVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLA 192
              D     P L+ W+ +AI   +KELD  +   IK+    YTLPQTVFS+  LT +RL+
Sbjct: 252 TSFDLLEDAPCLELWLNIAIYRNIKELDLHV--GIKNG-ECYTLPQTVFSSKTLTGIRLS 308

Query: 193 GCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGA 252
           GCKL   C  +    L+KL+L  + + E  +Q L+  CH +EDL   +C GLK L +S  
Sbjct: 309 GCKLGT-CNNIKLPYLQKLYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNL 367

Query: 253 HKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTP--VVDIAVCPNLKKFR-AFN 309
            +LK   +     +LK V+I A +L      F + G+ T    V +  C +LK+      
Sbjct: 368 IRLKRAEIHH-CIQLKKVEISAPNLD----TFWYCGKKTSPCKVSLEGCTSLKRLTLEHP 422

Query: 310 LLGQEFC-TLISKFPLLEDLSLFACSSFERITISSN-QLKHLSLVHCASLKAINIDAPNL 367
            + ++FC    S FPLLE L L   ++  R  I SN  L+  +L  C  L  + ++APNL
Sbjct: 423 QVTRDFCENQFSNFPLLEKLDLSMSNNKSRFIIISNPHLEKFTLKGCKKLGIVLVEAPNL 482

Query: 368 LS 369
           LS
Sbjct: 483 LS 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 227/486 (46%), Gaps = 55/486 (11%)

Query: 30  MDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNF---GCLADA 86
           MD IS+LP  I+ HI+SFL  K+  + +ILSKRW     +FP  +FD++ F     L + 
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60

Query: 87  SGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDK 146
             H +N + +  +   CL +F    D                       +P  +  ++D+
Sbjct: 61  RFHLINFVEQTLKQLKCLRKFKLHTDFP---------------------EPNSMV-VVDR 98

Query: 147 WIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFL 206
           WI   +E+GV+EL+  +     +    Y LPQ VF+   LT L +  CKL         L
Sbjct: 99  WIDYVLESGVQELEIVV---TVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLL 155

Query: 207 SLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETL-SS 265
           S+K + L GV+  ++ V++L+  C F++ +    CLGL+ L +   ++L  +TME   +S
Sbjct: 156 SMKSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNEL--ITMEVQNNS 213

Query: 266 ELKGVKIVASSLQQLTLQFPFEGQGTP-VVDIAVCPNLK--KFRAFNLLGQEFCTLISKF 322
            L      A +LQ     F F GQ  P  ++I+ C NLK  K     +    F    S+F
Sbjct: 214 GLYEFGTKAMNLQ----AFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEF 269

Query: 323 PLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPIISI 382
           PLLE L+L  C   E + ISS+ LK   L  C S+  ++ID P L    F  +   +IS 
Sbjct: 270 PLLEILALSYCHMLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEFSGD---VISF 326

Query: 383 NSQCSWNIHFNCQDD-------HDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKF 435
               S N     Q D        D  W +   +FL     ++ L++   + +S+    + 
Sbjct: 327 ----SLNAPALSQADIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQEL 382

Query: 436 SRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWIC-YPRTLSLSTVNKGRPFIVWL 494
                S    V+ L+LR++    SPS  + L+  + WI   P+T+++ +   G+  + ++
Sbjct: 383 RETFGSPLYGVKHLKLRIIKPLFSPSLKD-LVKALLWIAPQPQTIAVES-GFGKKILKFV 440

Query: 495 YDYLRN 500
           Y+  R+
Sbjct: 441 YEKARD 446

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula]

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 251/521 (48%), Gaps = 54/521 (10%)

Query: 28  ETMDRISDLPTFIIHHIMSFLP-AKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADA 86
           E++DRIS LP  +I+HI+SFL   ++A R   LSKRW     S+  L F +  F   A  
Sbjct: 39  ESVDRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAALIFYEQKF---AAG 95

Query: 87  SGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDK 146
            G    + +EN  FR  +A        SL  +      IQKL + +   D     PL+D 
Sbjct: 96  IGPEDGSNKENL-FRQHVAD-------SLHTYLANNLQIQKLLLHMMSFDLTD-APLVDS 146

Query: 147 WIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFL 206
           W+  A+   ++E+D QI    KD ++ YTLP+ V S+  LT LRL+GC L + C  +   
Sbjct: 147 WLTSAVSQDIQEIDLQI--GFKD-INRYTLPEVVLSSETLTGLRLSGCILRR-CGNIMLP 202

Query: 207 SLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS-S 265
            L+KL+L  V++ EQ+V  L+  C  +EDL F +C GLK L I   H   +  +E  + +
Sbjct: 203 RLQKLYLRKVHLGEQIVTNLISCCPSIEDLRFVQCSGLKFLYI---HCDSLSRLEIHNCN 259

Query: 266 ELKGVKIVASSLQQLTLQFPFEG-QGTPV-VDIAVCPNLKKFR-AFNLLGQEFC-TLISK 321
           +LK   I A +L      F F G + TP  V++  C +LKK       + ++FC    +K
Sbjct: 260 QLKTAYIFAPNLD----TFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRDFCENQFNK 315

Query: 322 FPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYN--PF-- 377
           FPLLE L L      + ITI +  L+ + L  C  L  + I AP L+S        P+  
Sbjct: 316 FPLLEKLDLCIADKMKSITIFNRCLQRIVLKGCKKLTYVQIYAPKLVSFELKGETMPYFD 375

Query: 378 ---PIISINSQCSWNIHFNCQDDHDGG--WFLNFKDFLRISKKIEELSIDFLSNQSLFNL 432
              P +  +++ S +     +D   G   WF+  + F+ +   +E   +   S++ +   
Sbjct: 376 FVTPFLLTDAKISLSTATESRDVGLGNQLWFM-MRPFISLFFPVEGFKMIMHSSKHIIIH 434

Query: 433 YKFS--RCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVNKGRPF 490
              S  +C     +  E ++    + DI        L G+    +P ++S+ + + G  F
Sbjct: 435 EDLSSIKCPPLHDLTFEIIKSSACVEDI--------LYGLLRTLHPESVSIIS-SSGNKF 485

Query: 491 IVWLYDY--LRNPAKKCCCSDHTKS--WWHYLKDAKIESFK 527
              +Y+   +++    CC  + +K+  W H+LKD K ES++
Sbjct: 486 HESVYEMIKIKDDDPVCCIYNISKNKCWRHFLKDVKSESWQ 526

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	565
TAIR|locus:2081297	388	AT3G59190 "AT3G59190" [Arabido	0.339	0.494	0.324	3.9e-15
TAIR|locus:2099119	482	AT3G58930 "AT3G58930" [Arabido	0.258	0.302	0.341	7e-14
TAIR|locus:2099019	457	AT3G58860 "AT3G58860" [Arabido	0.208	0.258	0.367	3.1e-12
TAIR|locus:2161088	421	AT5G56370 "AT5G56370" [Arabido	0.143	0.192	0.387	4.6e-12
TAIR|locus:2152950	540	AT5G41840 [Arabidopsis thalian	0.336	0.351	0.305	5.1e-12
TAIR|locus:2081157	520	AT3G59200 "AT3G59200" [Arabido	0.208	0.226	0.343	5.2e-12
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.376	0.442	0.25	7.4e-12
TAIR|locus:2126096	507	AT4G00320 "AT4G00320" [Arabido	0.353	0.394	0.313	7.5e-12
TAIR|locus:2161053	422	AT5G56420 "AT5G56420" [Arabido	0.279	0.374	0.296	7.8e-12
TAIR|locus:2099124	618	AT3G58940 "AT3G58940" [Arabido	0.254	0.233	0.341	9.2e-12

TAIR|locus:2081297 AT3G59190 "AT3G59190" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
 Identities = 71/219 (32%), Positives = 101/219 (46%)

Query:    24 KMMDE-TMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGC 82
             K MD  + D IS+LP  ++ H++SFLP  EAA  S+L+KRW    +  P LD D   +  
Sbjct:     4 KRMDSGSKDIISNLPDALLCHVLSFLPTTEAASTSVLAKRWRFLLAFVPNLDLDNMIYD- 62

Query:    83 LADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLK-FSIQKLRIVIGVLDPEHLP 141
                  G      R+  E R     F+D V ++L     LK FS   LR  IG  DP  + 
Sbjct:    63 -RPKMGR-----RKRLELRKSFKLFVDRV-MALQGNAPLKKFS---LRCKIGS-DPSRV- 110

Query:   142 PLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCY 201
                + W+   ++ GV+ELD  I  +     + Y LP  V     L  L+++G        
Sbjct:   111 ---NGWVLKVLDRGVEELDLYIASE-----YEYPLPPKVLMTKTLVSLKVSGTDEFTIDV 162

Query:   202 AMCFL-SLKKLHLYGVYITEQ---MVQKLLHECHFLEDL 236
                FL  LK LHL  +   ++      KL+  CH LE+L
Sbjct:   163 GEFFLPKLKTLHLSAISFGDEGGPPFAKLISACHALEEL 201

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2099119 AT3G58930 "AT3G58930" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
 Identities = 56/164 (34%), Positives = 80/164 (48%)

Query:    30 MDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGH 89
             MDR+S+LP  +  HI+SFLPAK  A  S+LSK W       PILD D   F  L    G 
Sbjct:     1 MDRVSNLPDGVRGHILSFLPAKHIALTSVLSKSWLNLWKLIPILDIDDSEF--LHPEEGK 58

Query:    90 TLNALRENREFRTCLARFIDAVDLSLSRFCNL-KFSIQKLRIVIGVLDPEHLPPLLDKWI 148
                   E  E R     F+D V L+L     + +FS   L+ + G+  P+H+    ++WI
Sbjct:    59 A-----ERLEIRQSFVDFVDRV-LALQDDSPIDRFS---LKCITGI-HPDHV----NRWI 104

Query:   149 ALAIENGVKELDFQILPDIKDYVHTYT-LPQTVFSANFLTHLRL 191
                ++ GV +LD  I    +D       LPQ +F +  L  L++
Sbjct:   105 CNVLQRGVSDLDLFIDFSYEDTQEDEDMLPQEMFVSKTLVKLKI 148

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
 Identities = 50/136 (36%), Positives = 67/136 (49%)

Query:    26 MD-ETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLA 84
             MD E MD  S LP  +I HI+S LP KEAA  S+L+K+W    +  P LDF+  +F  L 
Sbjct:     1 MDSEKMDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDF--L- 57

Query:    85 DASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLK-FSIQKLRIVIGVLDPEHLPPL 143
                 H     RE          F+D V L+L     +K FS   L +  GV DP+ +   
Sbjct:    58 ----HPQEGKREKDGILRSFMDFVDRV-LALQGASPIKKFS---LNVKTGV-DPDRV--- 105

Query:   144 LDKWIALAIENGVKEL 159
              D+WI   ++ GV  L
Sbjct:   106 -DRWICNVLQRGVSHL 120

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161088 AT5G56370 "AT5G56370" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
 Identities = 36/93 (38%), Positives = 52/93 (55%)

Query:   147 WIALAIENGVKELDFQILPDIKDYVHTYT----LPQTVFSANFLTHLRLAGCKLEQPCYA 202
             W+ +A+E G+ ELDF       DY H  T    LPQ++F+   LT L+L    L+   + 
Sbjct:    93 WVRIAVEKGLCELDF-------DYEHYKTEPCRLPQSLFTCGTLTVLKLKNVSLKDVQFP 145

Query:   203 MCFLSLKKLHL-YGVYITEQMVQKLLHECHFLE 234
             +CF  LK LHL Y +++ ++  QKLL  C  LE
Sbjct:   146 VCFKLLKTLHLEYVIFLDKETPQKLLSSCPILE 178

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2152950 AT5G41840 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 65/213 (30%), Positives = 101/213 (47%)

Query:    31 DRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHT 90
             DRIS LP  +I HI+SFLP KEAA  ++L+KRW+   +  P L+FD   +        H 
Sbjct:    14 DRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYF-------HP 66

Query:    91 LNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVI-GVLDPEHLPPLLDKWIA 149
                 R N+ +      F+  VD  L+     K  +++  +    V+D   +   L+ WI 
Sbjct:    67 --RARRNK-YSKSYESFMSFVDSVLALQAKTKTPLKRFHVKCEDVVDQSWV---LE-WIP 119

Query:   150 LAIENGVKELDFQILPDIKDYVHT---YTLPQTVFSANFLTHLRLA---GCKLEQPCYAM 203
               ++ GV ++D  I    ++Y      Y+LP  +F +  L  L++    G  ++     +
Sbjct:   120 KVLKRGVLDIDLHITSS-RNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVEG-GV 177

Query:   204 CFLSLKKLHLYGVYITEQMVQKLLHECHFLEDL 236
                 LK LHL    I   M+ KLL  CH LE+L
Sbjct:   178 SLPKLKTLHLDYFKIETSMLNKLLSGCHALEEL 210

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081157 AT3G59200 "AT3G59200" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
 Identities = 46/134 (34%), Positives = 64/134 (47%)

Query:    31 DRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHT 90
             DRIS LP  ++ HI+SFLP KEAA  S+LSK+W    +    LDFD  ++       G  
Sbjct:     7 DRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDY-----QDGKP 61

Query:    91 LNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIAL 150
              + +  +R F      F+D V L+L        S+ K  +     D + L  +   WI  
Sbjct:    62 KSDVELSRSFM----EFVDRV-LALQG----NGSVNKFSLECSNYDVD-LARVTG-WILN 110

Query:   151 AIENGVKELDFQIL 164
              +  GV ELD  IL
Sbjct:   111 VLGRGVSELDLSIL 124

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 58/232 (25%), Positives = 109/232 (46%)

Query:   144 LDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLA-GCKLE----Q 198
             +D WI  A+   V+ L   +  D       Y +P+ ++  + L  L L  GCK +     
Sbjct:   126 IDSWINFAMSRNVENLSLYLDED------KYDIPEFLYINSSLKQLYLDFGCKKDFISLN 179

Query:   199 PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKIL 258
             P  ++ + SLK L LY   I+++ +  +L  C  LE L  F C  LK+L +S + +L  +
Sbjct:   180 PKCSVSWTSLKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRL--I 237

Query:   259 TME-TLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLK-KFRAFNLLGQEFC 316
             T+E T    ++  ++VA  ++ L L    E +   +VD++     +    A+ ++  +  
Sbjct:   238 TLEITRRCRMEPTQLVAPHIRCLRL-INSE-KPCALVDVSSLSQAELDITAYAIVDNKLE 295

Query:   317 TLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLL 368
                 +  +++ L    C + E++T+ +N LK LSL     +    + A  L+
Sbjct:   296 ADFHQTMVVKMLE--KCQNVEKLTLGANFLKMLSLAELRGVSFPKLKAKALI 345

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126096 AT4G00320 "AT4G00320" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 7.5e-12, P = 7.5e-12
 Identities = 70/223 (31%), Positives = 108/223 (48%)

Query:    20 SKELKMMDETMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHN 79
             SK+ K  D + D IS LP  +I HI+SFLP K AA  ++L+KRW+   +  P LDFD+ +
Sbjct:     3 SKK-KCFDGSRDGISGLPDAMICHILSFLPTKVAASTTVLAKRWKPLLAFMPNLDFDE-S 60

Query:    80 FGCLADASGHTLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEH 139
             F    D          E R+        +D+V L+L    N   ++ K  +    ++   
Sbjct:    61 FRF--DPR----MTCEERRKGSESFMLVVDSV-LALQAEANA--TLNKFYVKCEGVEQNS 111

Query:   140 LPPLLDKWIALAIENGVKELDFQILPDIKDYVHT---YTLPQTVFSANFLTHLRLA---G 193
             +   L+ WI   ++ GV ++D QI P  + +      Y LP  +F +  L  L++    G
Sbjct:   112 V---LE-WIPKVLKRGVLDIDLQI-PSSRGFGSNSTFYPLPSEIFVSKTLVRLKIQFQDG 166

Query:   194 CKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDL 236
               +      +    LK LHL  V +  +M+QKLL  CH LE+L
Sbjct:   167 ANVNVEG-DVSLPMLKTLHLDYVKMDTRMLQKLLSGCHTLEEL 208

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2161053 AT5G56420 "AT5G56420" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
 Identities = 51/172 (29%), Positives = 85/172 (49%)

Query:   102 TCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDF 161
             TC  RF   VD SL    +   +++ L I IG +       +   W+ + ++  V+EL  
Sbjct:    58 TC-PRFSQFVDRSL--LLHKAPTLESLNIKIGSICFTAEKDV-GVWVRIGVDRFVRELSV 113

Query:   162 QILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQP-CYAMCFLSLKKLHLYGV-YIT 219
                   ++ +    LP+ +F+ + L  L+L    LE   CY +CF SLK LHL  V Y+ 
Sbjct:   114 SYCSG-EEPIR---LPKCLFTCSTLAVLKLENITLEDASCY-VCFQSLKTLHLLDVKYLD 168

Query:   220 EQMVQKLLHECHFLEDLNFFECLG--LKLLCISGAHKLKILTMETLSSELKG 269
             +Q + +++  C  LEDL    C G  +K++ ++ A  LK L++   S   +G
Sbjct:   169 DQSLPRIISSCSSLEDLVVQRCPGDNVKVVTVT-APSLKTLSLHKSSQAFEG 219

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099124 AT3G58940 "AT3G58940" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
 Identities = 57/167 (34%), Positives = 80/167 (47%)

Query:    30 MDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGH 89
             MDR+S+LP  +  HI+SFLP K AA  S+LSK W         LD D  +F  L    G 
Sbjct:     1 MDRVSNLPEEVRCHILSFLPTKHAALTSVLSKSWLNLWKFETNLDIDDSDF--LHPEEGK 58

Query:    90 TLNALRENREFRTCLARFIDAVDLSLSRFCNL-KFSIQKLRIVIGVLDPEHLPPLLDKWI 148
                   E  E R     F+D V L+L     + KFS   L+ + G+  P+H+    ++WI
Sbjct:    59 A-----ERDEIRQSFVEFVDGV-LALQGDSPIEKFS---LKCITGI-HPDHV----NRWI 104

Query:   149 ALAIENGVKEL----DFQILPDIKDYVHTYTLPQTVFSANFLTHLRL 191
                ++ GV +L    DF      +D    Y LPQ +F +  L  L+L
Sbjct:   105 CNVLQRGVSDLYLFTDFSDEDTEED--GGYRLPQEMFVSRTLVKLKL 149

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1460040 hypothetical protein (528 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	565
pfam00646	48	pfam00646, F-box, F-box domain	0.003

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 31 DRISDLPTFIIHHIMSFLPAKEAARASILSKRW 63
            + DLP  ++  I+S L  K+  R S++SKRW
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRW 33

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	565
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.75
KOG4341	483	consensus F-box protein containing LRR [General fu	99.64
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.44
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.39
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.34
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.23
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.95
KOG4341	483	consensus F-box protein containing LRR [General fu	98.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.9
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.65
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.63
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.62
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.49
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.47
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.41
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.35
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.29
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.24
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.19
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.17
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.15
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.09
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.96
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.81
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.8
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.77
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.26
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.2
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.98
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.87
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.75
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.62
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.59
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.42
PRK15386	426	type III secretion protein GogB; Provisional	96.42
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.36
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.32
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.3
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.17
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.04
PLN03150	623	hypothetical protein; Provisional	96.04
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.59
PLN03150	623	hypothetical protein; Provisional	95.47
PRK15386	426	type III secretion protein GogB; Provisional	95.39
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.09
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.04
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	93.89
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.72
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.39
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.69
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	91.55
KOG2997	366	consensus F-box protein FBX9 [General function pre	91.45
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.17
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	91.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	88.78
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	87.11
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.97
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.09
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.59
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.83
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	81.1

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=6e-19  Score=167.02  Aligned_cols=268  Identities=24%  Similarity=0.269  Sum_probs=183.9

Q ss_pred             CCCCchHHHHHHHcCCChHHHHHHhhcchhhhhh------hccCCeEEEcCCCccccccccCCchhhhhhhhhhhHhHHH
Q 008452           33 ISDLPTFIIHHIMSFLPAKEAARASILSKRWEKF------HSSFPILDFDQHNFGCLADASGHTLNALRENREFRTCLAR  106 (565)
Q Consensus        33 is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~l------w~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (565)
                      +..|||||+..|||.|+.+|+.+.+.|||||.++      |..   ++.....+.+                        
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p------------------------  150 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP------------------------  150 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh------------------------
Confidence            6789999999999999999999999999999865      554   3333333321                        


Q ss_pred             HHHHHHHHHhccccCCCCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCc
Q 008452          107 FIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFL  186 (565)
Q Consensus       107 f~~~v~~~L~~~~~~~~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L  186 (565)
                        +...+.+      ...+..|++.-...++   ...++..  ......++.++|++..     .....+...+..|..|
T Consensus       151 --~~l~~l~------~rgV~v~Rlar~~~~~---prlae~~--~~frsRlq~lDLS~s~-----it~stl~~iLs~C~kL  212 (419)
T KOG2120|consen  151 --DVLGRLL------SRGVIVFRLARSFMDQ---PRLAEHF--SPFRSRLQHLDLSNSV-----ITVSTLHGILSQCSKL  212 (419)
T ss_pred             --hHHHHHH------hCCeEEEEcchhhhcC---chhhhhh--hhhhhhhHHhhcchhh-----eeHHHHHHHHHHHHhh
Confidence              2222222      1233333332111010   1111111  1223478999998731     2233455556679999


Q ss_pred             cEEEecCccCCC--CCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCccc----ccccCcccceeE
Q 008452          187 THLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKLL----CISGAHKLKILT  259 (565)
Q Consensus       187 ~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~l----~i~~~~~L~~L~  259 (565)
                      +.|.|.|..+++  -.....-.+|+.|+|+.+.. +..+++-++++|..|.+|+|+.|...+..    ..+-.++|+.|+
T Consensus       213 k~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LN  292 (419)
T KOG2120|consen  213 KNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLN  292 (419)
T ss_pred             hhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhh
Confidence            999999999988  34556778999999999998 89999999999999999999999874432    111249999999


Q ss_pred             ccccc-----ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccc
Q 008452          260 METLS-----SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACS  334 (565)
Q Consensus       260 l~~c~-----~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~  334 (565)
                      +++|.     +.+..+.-.||+|..|+++++..                      +++ .+...+.+++.|+.|.++.|.
T Consensus       293 lsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~----------------------l~~-~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  293 LSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM----------------------LKN-DCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             hhhhHhhhhhhHHHHHHHhCCceeeeccccccc----------------------cCc-hHHHHHHhcchheeeehhhhc
Confidence            99997     33344445889999999988873                      334 444556789999999999997


Q ss_pred             cccccc----ccCCcccEEeecCCc---ChhhccccCCCcc
Q 008452          335 SFERIT----ISSNQLKHLSLVHCA---SLKAINIDAPNLL  368 (565)
Q Consensus       335 ~~~~l~----~~~~~L~~L~L~~C~---~L~~L~i~~p~L~  368 (565)
                      .+..-.    -+-+.|..|++.+|-   +++.+....|++.
T Consensus       350 ~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  350 DIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK  390 (419)
T ss_pred             CCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence            764321    134788899988885   4555555566553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.64  E-value=3.7e-17  Score=161.75  Aligned_cols=41  Identities=24%  Similarity=0.510  Sum_probs=35.3

Q ss_pred             CCchHHHHHHHcCCChHHHHHHhhcchhhhhh------hccCCeEEE
Q 008452           35 DLPTFIIHHIMSFLPAKEAARASILSKRWEKF------HSSFPILDF   75 (565)
Q Consensus        35 ~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~l------w~~~~~l~f   75 (565)
                      .||.|++.+|||+|.++.++|++++|+-|..+      |..++.++|
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~  120 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTF  120 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcc
Confidence            59999999999999999999999999999865      666554444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.44  E-value=4.8e-13  Score=156.88  Aligned_cols=258  Identities=14%  Similarity=0.109  Sum_probs=150.2

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCcccc-cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQTVF-SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH  231 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp  231 (565)
                      .++++.|+|...      .....+|..++ .+++|++|+|++|.+........+++|++|+|++|.++.. +...+..++
T Consensus        92 l~~L~~L~Ls~n------~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~  164 (968)
T PLN00113         92 LPYIQTINLSNN------QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFS  164 (968)
T ss_pred             CCCCCEEECCCC------ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCC
Confidence            467888887652      12235777666 6788888888888776522235678888888888877322 233466788


Q ss_pred             CCceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccc
Q 008452          232 FLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRA  307 (565)
Q Consensus       232 ~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~  307 (565)
                      +|++|+|++|...+.+  .+..+++|+.|++++|. .+...-.+ .+++|+.|++++|.+ ....+..++.+++|+.|++
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL-SGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc-CCcCChhHhcCCCCCEEEC
Confidence            8888888887653322  34456788888888775 11111223 567788888877775 4445556777777777776


Q ss_pred             cccc-hHHHHHHhcCCCCcceeecccccccccccc---cCCcccEEeecCCcChhhcc---ccCCCccceeEecCCCC--
Q 008452          308 FNLL-GQEFCTLISKFPLLEDLSLFACSSFERITI---SSNQLKHLSLVHCASLKAIN---IDAPNLLSCNFWYNPFP--  378 (565)
Q Consensus       308 ~~i~-~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~---~~~~L~~L~L~~C~~L~~L~---i~~p~L~~~~~~g~~~~--  378 (565)
                      .+.. ...++..+.++++|+.|+|.+|...+.++.   ...+|+.|++++|.-...+.   -..++|+.+.+.++...  
T Consensus       244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~  323 (968)
T PLN00113        244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK  323 (968)
T ss_pred             cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence            6332 224455566777788887777644333321   23567777776663111110   12345666665555431  


Q ss_pred             ----ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452          379 ----IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS  425 (565)
Q Consensus       379 ----~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~  425 (565)
                          +..+.+|+.+++..+...+..+       ..+.++++|+.|+++.+.
T Consensus       324 ~~~~~~~l~~L~~L~L~~n~l~~~~p-------~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        324 IPVALTSLPRLQVLQLWSNKFSGEIP-------KNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             CChhHhcCCCCCEEECcCCCCcCcCC-------hHHhCCCCCcEEECCCCe
Confidence                2223456666665433222222       234455556666655444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.39  E-value=1e-12  Score=154.13  Aligned_cols=304  Identities=18%  Similarity=0.121  Sum_probs=150.2

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      ..++++|++...      .....+|..+..+++|++|.|++|.+..  +..+..+++|++|+|++|.+... +...+..+
T Consensus       235 l~~L~~L~L~~n------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l  307 (968)
T PLN00113        235 LTSLNHLDLVYN------NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQL  307 (968)
T ss_pred             CCCCCEEECcCc------eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCC
Confidence            357888888652      1223567777777888888888877654  55566777888888887776322 33445667


Q ss_pred             cCCceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452          231 HFLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR  306 (565)
Q Consensus       231 p~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  306 (565)
                      ++|+.|++.+|...+.+  .+..+++|+.|++++|. .+...-.+ ..++|+.|++++|.+ ....+..+..+++|+.|+
T Consensus       308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l-~~~~p~~~~~~~~L~~L~  386 (968)
T PLN00113        308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL-TGEIPEGLCSSGNLFKLI  386 (968)
T ss_pred             CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee-EeeCChhHhCcCCCCEEE
Confidence            77777777777553322  23345677777777664 11111112 456666666666554 222223333334444443


Q ss_pred             cccc-chHHH------------------------HHHhcCCCCcceeeccccccccccc---ccCCcccEEeecCCcChh
Q 008452          307 AFNL-LGQEF------------------------CTLISKFPLLEDLSLFACSSFERIT---ISSNQLKHLSLVHCASLK  358 (565)
Q Consensus       307 ~~~i-~~~~l------------------------~~l~~~~~~L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~  358 (565)
                      +... -...+                        +..+.++++|+.|++++|...+.++   ...++|+.|++++|.-..
T Consensus       387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~  466 (968)
T PLN00113        387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG  466 (968)
T ss_pred             CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence            3311 11122                        2233344444445544442222221   123455555555543111


Q ss_pred             hcc--ccCCCccceeEecCCCC------ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccc
Q 008452          359 AIN--IDAPNLLSCNFWYNPFP------IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLF  430 (565)
Q Consensus       359 ~L~--i~~p~L~~~~~~g~~~~------~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~  430 (565)
                      .+.  ...++|+.+.++++...      +..+.+|+.+++..|...+..+       ..+.++++|++|+++.+.... .
T Consensus       467 ~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~Ls~N~l~~-~  538 (968)
T PLN00113        467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-------DELSSCKKLVSLDLSHNQLSG-Q  538 (968)
T ss_pred             ecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC-------hHHcCccCCCEEECCCCcccc-c
Confidence            110  12234555555554331      1122355555554433222222       245667777777777666221 3


Q ss_pred             cccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCCeeeecc
Q 008452          431 NLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLST  483 (565)
Q Consensus       431 ~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~  483 (565)
                      +|..|..     .++|+.|.+... ....     .+...+.....|+++.++.
T Consensus       539 ~p~~~~~-----l~~L~~L~Ls~N-~l~~-----~~p~~l~~l~~L~~l~ls~  580 (968)
T PLN00113        539 IPASFSE-----MPVLSQLDLSQN-QLSG-----EIPKNLGNVESLVQVNISH  580 (968)
T ss_pred             CChhHhC-----cccCCEEECCCC-cccc-----cCChhHhcCcccCEEeccC
Confidence            4555544     234666665421 0110     1122233455677777743

>PLN03210 Resistant to P

Probab=99.34  E-value=5.5e-12  Score=149.11  Aligned_cols=121  Identities=24%  Similarity=0.246  Sum_probs=64.9

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      ++++.|.+...       ....+|..+ ...+|+.|+|.++.+.. +.....+++|+.|+|+++..- ..+. -++.+++
T Consensus       589 ~~Lr~L~~~~~-------~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip-~ls~l~~  658 (1153)
T PLN03210        589 PKLRLLRWDKY-------PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIP-DLSMATN  658 (1153)
T ss_pred             cccEEEEecCC-------CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCC-ccccCCc
Confidence            35777777652       234555443 45677777777766655 445556677777777655320 0011 1445666


Q ss_pred             CceeEeeecCCCccc--ccccCcccceeEcccccccccchh--hcCccccEeeecCC
Q 008452          233 LEDLNFFECLGLKLL--CISGAHKLKILTMETLSSELKGVK--IVASSLQQLTLQFP  285 (565)
Q Consensus       233 Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~~~l~~i~--~~~p~L~~L~l~~~  285 (565)
                      |+.|+|.+|..+..+  .+..+++|+.|++++|. .+..+.  +++++|+.|++++|
T Consensus       659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~-~L~~Lp~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE-NLEILPTGINLKSLYRLNLSGC  714 (1153)
T ss_pred             ccEEEecCCCCccccchhhhccCCCCEEeCCCCC-CcCccCCcCCCCCCCEEeCCCC
Confidence            666666666554433  22335566666666654 333322  24455555555554

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.23  E-value=6.4e-11  Score=140.14  Aligned_cols=252  Identities=17%  Similarity=0.155  Sum_probs=128.5

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCcc-CCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCK-LEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~-l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      .++++|++..       .....+|..+..+++|+.|+|++|. +...+....+++|++|+|++|..- ..+...+..+++
T Consensus       611 ~~L~~L~L~~-------s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~  682 (1153)
T PLN03210        611 ENLVKLQMQG-------SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNK  682 (1153)
T ss_pred             cCCcEEECcC-------ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCC
Confidence            3555555544       1223445555556666666666653 222334555666666666665431 112233455666


Q ss_pred             CceeEeeecCCCcccccc-cCcccceeEcccccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccc
Q 008452          233 LEDLNFFECLGLKLLCIS-GAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL  311 (565)
Q Consensus       233 Le~L~L~~c~~l~~l~i~-~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~  311 (565)
                      |+.|++.+|..++.+... .+++|+.|++++|. .+..+....++|++|+++++.+..  .+..+ .+++|+.|.+..+.
T Consensus       683 L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~~--lP~~~-~l~~L~~L~l~~~~  758 (1153)
T PLN03210        683 LEDLDMSRCENLEILPTGINLKSLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIEE--FPSNL-RLENLDELILCEMK  758 (1153)
T ss_pred             CCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC-CccccccccCCcCeeecCCCcccc--ccccc-cccccccccccccc
Confidence            666666666655544321 24566666666664 333333334566666666655411  11111 23444444433221


Q ss_pred             hHHHH--------HHhcCCCCcceeecccccccccccc---cCCcccEEeecCCcChhhccc--cCCCccceeEecCCC-
Q 008452          312 GQEFC--------TLISKFPLLEDLSLFACSSFERITI---SSNQLKHLSLVHCASLKAINI--DAPNLLSCNFWYNPF-  377 (565)
Q Consensus       312 ~~~l~--------~l~~~~~~L~~L~L~~C~~~~~l~~---~~~~L~~L~L~~C~~L~~L~i--~~p~L~~~~~~g~~~-  377 (565)
                      ...+.        ......++|+.|+|++|..+..++.   .+++|+.|+|++|.+++.+..  ..++|+.+.++|+.. 
T Consensus       759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L  838 (1153)
T PLN03210        759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL  838 (1153)
T ss_pred             hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc
Confidence            11110        0112345677777777765555543   346677777777777766532  235666777766542 


Q ss_pred             -Ccee-cccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452          378 -PIIS-INSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS  425 (565)
Q Consensus       378 -~~~~-~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~  425 (565)
                       .+.. ..+++.+++..+.        +..+...+.++++|++|++..++
T Consensus       839 ~~~p~~~~nL~~L~Ls~n~--------i~~iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        839 RTFPDISTNISDLNLSRTG--------IEEVPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             ccccccccccCEeECCCCC--------CccChHHHhcCCCCCEEECCCCC
Confidence             1111 1345655554311        22344456777778888777655

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.95  E-value=5.4e-10  Score=115.43  Aligned_cols=141  Identities=16%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             cEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCC--CcccccccCcccceeEccc
Q 008452          187 THLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLG--LKLLCISGAHKLKILTMET  262 (565)
Q Consensus       187 ~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~--l~~l~i~~~~~L~~L~l~~  262 (565)
                      +.|++++|++..  +..+.++|+|++++|.+|.+  ..+........+|+.|+|.+|..  ++.-.+..+|.|++|+++.
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            456777766665  45556677777777776655  33444444455677777766643  1111223356777777776


Q ss_pred             ccccccch---hh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHH-HhcCCCCcceeeccc
Q 008452          263 LSSELKGV---KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCT-LISKFPLLEDLSLFA  332 (565)
Q Consensus       263 c~~~l~~i---~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~-l~~~~~~L~~L~L~~  332 (565)
                      +.  +..|   .+ .-+++++|++++|.+ +.-....|.++.+|..|++++.....++. .+.++|+|+.|+|..
T Consensus       159 N~--is~i~~~sfp~~~ni~~L~La~N~I-t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  159 NL--ISEIPKPSFPAKVNIKKLNLASNRI-TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             ch--hhcccCCCCCCCCCceEEeeccccc-cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence            63  3333   23 225677777777766 33334455666666666666443333332 355677777777766

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.94  E-value=1.8e-10  Score=114.81  Aligned_cols=172  Identities=22%  Similarity=0.379  Sum_probs=76.4

Q ss_pred             CccEEEecCccCCC----CCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCcccccc----cCccc
Q 008452          185 FLTHLRLAGCKLEQ----PCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKLLCIS----GAHKL  255 (565)
Q Consensus       185 ~L~~L~L~~c~l~~----~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~----~~~~L  255 (565)
                      .|++|.|.||.-..    .....++|+++.|.+.+|.. ++..+..+...|+.|+.|++..|..++...+.    +|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            45555555542221    22233455555555555554 55555555555555555555555554443221    25555


Q ss_pred             ceeEccccc----ccccchhhcCccccEeeecCCCCCCCCcee-eccccccccccccc---ccchHHHHHHhcCCCCcce
Q 008452          256 KILTMETLS----SELKGVKIVASSLQQLTLQFPFEGQGTPVV-DIAVCPNLKKFRAF---NLLGQEFCTLISKFPLLED  327 (565)
Q Consensus       256 ~~L~l~~c~----~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~~~---~i~~~~l~~l~~~~~~L~~  327 (565)
                      ++|+++.|+    .+++.+...+.+++.+...||.-....... .-+.+..+..+++.   .++|..+..+...+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            555555555    223333334444444444444310000000 00111112222211   2445555555555555555


Q ss_pred             eeccccccccc-----ccccCCcccEEeecCCcC
Q 008452          328 LSLFACSSFER-----ITISSNQLKHLSLVHCAS  356 (565)
Q Consensus       328 L~L~~C~~~~~-----l~~~~~~L~~L~L~~C~~  356 (565)
                      |..++|..+++     +...+.+|+.|.+..|..
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~  332 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ  332 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccch
Confidence            55555544433     223445555555555553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.91  E-value=1.2e-10  Score=120.85  Aligned_cols=159  Identities=17%  Similarity=0.057  Sum_probs=121.5

Q ss_pred             cccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc-cccc
Q 008452          172 HTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK-LLCI  249 (565)
Q Consensus       172 ~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~-~l~i  249 (565)
                      ....+|..+|..+.|+.|+|+.|.+.. |.....-+++-.|+|++|.+. ..-..+..+...|-.|+|+.++.-. .-.+
T Consensus        91 KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~  169 (1255)
T KOG0444|consen   91 KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQI  169 (1255)
T ss_pred             ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence            455789999999999999999998887 777788899999999999881 1123445567778888998886411 1123


Q ss_pred             ccCcccceeEcccccccccchh---h-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCc
Q 008452          250 SGAHKLKILTMETLSSELKGVK---I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLL  325 (565)
Q Consensus       250 ~~~~~L~~L~l~~c~~~l~~i~---~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L  325 (565)
                      ..+..|++|.+++++  +..+.   + .+.+|+.|+++++...-..++.++..+.||+.++++...--.+++-+-++++|
T Consensus       170 RRL~~LqtL~Ls~NP--L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~L  247 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNNP--LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNL  247 (1255)
T ss_pred             HHHhhhhhhhcCCCh--hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhh
Confidence            346789999999885  33332   2 45677788888887644557778889999999999887777788888899999


Q ss_pred             ceeecccc
Q 008452          326 EDLSLFAC  333 (565)
Q Consensus       326 ~~L~L~~C  333 (565)
                      ++|.|++.
T Consensus       248 rrLNLS~N  255 (1255)
T KOG0444|consen  248 RRLNLSGN  255 (1255)
T ss_pred             heeccCcC
Confidence            99999985

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.90  E-value=6.8e-10  Score=114.70  Aligned_cols=126  Identities=15%  Similarity=0.100  Sum_probs=56.2

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH  231 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp  231 (565)
                      ++++++.+..       .....+|.......+|+.|.|.+|.+..  ......+|.|++|+|+.|.+++-. ..-+..-+
T Consensus       102 ~nLq~v~l~~-------N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~-~~sfp~~~  173 (873)
T KOG4194|consen  102 PNLQEVNLNK-------NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP-KPSFPAKV  173 (873)
T ss_pred             Ccceeeeecc-------chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc-CCCCCCCC
Confidence            4555555544       3344455444444455555555555444  223344555555555555441100 00112223


Q ss_pred             CCceeEeeecCC--CcccccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452          232 FLEDLNFFECLG--LKLLCISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       232 ~Le~L~L~~c~~--l~~l~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      +|++|+|+.|..  +..=.+.++.+|..|.++.+. +.+....+ ++|.|+.|++..|.+
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence            455555555543  111122334455555555553 22222233 355555555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=5.6e-09  Score=99.95  Aligned_cols=181  Identities=23%  Similarity=0.236  Sum_probs=120.8

Q ss_pred             HHHhCCcEEEEEEeCCCCcCcccccccCcc-cccCCCccEEEecCccCCC---CCcccCCCcCcEEEcCCeeechHHHHH
Q 008452          150 LAIENGVKELDFQILPDIKDYVHTYTLPQT-VFSANFLTHLRLAGCKLEQ---PCYAMCFLSLKKLHLYGVYITEQMVQK  225 (565)
Q Consensus       150 ~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~---~~~~~~l~~Lk~L~L~~~~~~~~~l~~  225 (565)
                      ....+||..+++.-...     ....+... .-.-..|++|+|++-.+..   ......|..||.|+|.++.++|.... 
T Consensus       155 ~l~~rgV~v~Rlar~~~-----~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-  228 (419)
T KOG2120|consen  155 RLLSRGVIVFRLARSFM-----DQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-  228 (419)
T ss_pred             HHHhCCeEEEEcchhhh-----cCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-
Confidence            34557998888763211     11111111 1112468999998865554   33446788899999999988766443 


Q ss_pred             HHhcCcCCceeEeeecCCCccc----ccccCcccceeEcccccc--cccchhh--cCccccEeeecCCCCCCCCceeecc
Q 008452          226 LLHECHFLEDLNFFECLGLKLL----CISGAHKLKILTMETLSS--ELKGVKI--VASSLQQLTLQFPFEGQGTPVVDIA  297 (565)
Q Consensus       226 ll~~cp~Le~L~L~~c~~l~~l----~i~~~~~L~~L~l~~c~~--~l~~i~~--~~p~L~~L~l~~~~~~~~~~~~~l~  297 (565)
                      -+....+|+.|+|+.|.+++.-    -+.+|.+|..|+++.|..  ....+.+  --++|..|+++|+..          
T Consensus       229 ~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr----------  298 (419)
T KOG2120|consen  229 TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR----------  298 (419)
T ss_pred             HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh----------
Confidence            4566788999999999887753    345688999999998861  1111122  346788888877763          


Q ss_pred             cccccccccccccchHHHHHHhcCCCCcceeecccccccccc----cccCCcccEEeecCCcCh
Q 008452          298 VCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERI----TISSNQLKHLSLVHCASL  357 (565)
Q Consensus       298 ~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l----~~~~~~L~~L~L~~C~~L  357 (565)
                                 +.....+..+...||+|..|+|++|..+..-    -...+.|++|.++.|..+
T Consensus       299 -----------nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  299 -----------NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             -----------hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence                       2334456677889999999999999766541    124588999999999755

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.63  E-value=3e-08  Score=70.14  Aligned_cols=35  Identities=34%  Similarity=0.710  Sum_probs=31.1

Q ss_pred             CCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhh
Q 008452           33 ISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFH   67 (565)
Q Consensus        33 is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw   67 (565)
                      |+.||+||+.+||++|+.+|+++++.|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999864

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.62  E-value=4.5e-09  Score=109.43  Aligned_cols=155  Identities=18%  Similarity=0.122  Sum_probs=84.7

Q ss_pred             cccCcccc-cCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCC-Ccc--cc
Q 008452          174 YTLPQTVF-SANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLG-LKL--LC  248 (565)
Q Consensus       174 ~~lp~~l~-~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~-l~~--l~  248 (565)
                      -.+|..++ ++..|-.|+|++|++.. |+....+.+|++|.|++|.+....+.. +.....|+.|.+++... +..  .+
T Consensus       139 etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqRTl~N~Pts  217 (1255)
T KOG0444|consen  139 ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQRTLDNIPTS  217 (1255)
T ss_pred             ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-CccchhhhhhhcccccchhhcCCCc
Confidence            34444443 34455556666665555 555555666666666666553322322 22344455555554432 111  12


Q ss_pred             cccCcccceeEcccccccccchh---hcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCc
Q 008452          249 ISGAHKLKILTMETLSSELKGVK---IVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLL  325 (565)
Q Consensus       249 i~~~~~L~~L~l~~c~~~l~~i~---~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L  325 (565)
                      +.++.+|+.++++.+  .+..+.   ...++|+.|++++|.+  .......+.-.+|++|.++...-..++..+.+++.|
T Consensus       218 ld~l~NL~dvDlS~N--~Lp~vPecly~l~~LrrLNLS~N~i--teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL  293 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLSEN--NLPIVPECLYKLRNLRRLNLSGNKI--TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKL  293 (1255)
T ss_pred             hhhhhhhhhcccccc--CCCcchHHHhhhhhhheeccCcCce--eeeeccHHHHhhhhhhccccchhccchHHHhhhHHH
Confidence            223556666666655  343332   2667777777777774  223333444566777777766666677777777777


Q ss_pred             ceeecccc
Q 008452          326 EDLSLFAC  333 (565)
Q Consensus       326 ~~L~L~~C  333 (565)
                      +.|.+.+.
T Consensus       294 ~kLy~n~N  301 (1255)
T KOG0444|consen  294 TKLYANNN  301 (1255)
T ss_pred             HHHHhccC
Confidence            77777654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.60  E-value=1.6e-07  Score=104.95  Aligned_cols=244  Identities=13%  Similarity=0.068  Sum_probs=137.1

Q ss_pred             HhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          152 IENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       152 ~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      ...+..+|.+..       .....+|..+.  ++|+.|+|++|.+.. +...  +++|++|+|++|.++  .+...+  .
T Consensus       176 l~~~~~~L~L~~-------~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lt--sLP~~l--~  240 (754)
T PRK15370        176 LKNNKTELRLKI-------LGLTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLT--SIPATL--P  240 (754)
T ss_pred             cccCceEEEeCC-------CCcCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCccc--cCChhh--h
Confidence            334667777765       23345665442  578999999988877 3322  368999999988773  122211  3


Q ss_pred             cCCceeEeeecCCCcccccccCcccceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccc
Q 008452          231 HFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFN  309 (565)
Q Consensus       231 p~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~  309 (565)
                      +.|+.|+|++|.. ..+...-..+|+.|+++++  .+..+.. -.++|+.|++++|.+..  .+..+  .++|+.|++.+
T Consensus       241 ~~L~~L~Ls~N~L-~~LP~~l~s~L~~L~Ls~N--~L~~LP~~l~~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~  313 (754)
T PRK15370        241 DTIQEMELSINRI-TELPERLPSALQSLDLFHN--KISCLPENLPEELRYLSVYDNSIRT--LPAHL--PSGITHLNVQS  313 (754)
T ss_pred             ccccEEECcCCcc-CcCChhHhCCCCEEECcCC--ccCccccccCCCCcEEECCCCcccc--Ccccc--hhhHHHHHhcC
Confidence            4788999988864 2332111357888888876  4444433 23578899998887622  12112  13566666553


Q ss_pred             cchHHHHHHhcCCCCcceeeccccccccccccc-CCcccEEeecCCcChhhcccc-CCCccceeEecCCC---Cceeccc
Q 008452          310 LLGQEFCTLISKFPLLEDLSLFACSSFERITIS-SNQLKHLSLVHCASLKAINID-APNLLSCNFWYNPF---PIISINS  384 (565)
Q Consensus       310 i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~-~~~L~~L~L~~C~~L~~L~i~-~p~L~~~~~~g~~~---~~~~~~s  384 (565)
                      ..-..++..  ..++|+.|++.+|. +..++.. +++|+.|+++++ ++..+.-. .++|+.+.++++..   |-....+
T Consensus       314 N~Lt~LP~~--l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~~s  389 (754)
T PRK15370        314 NSLTALPET--LPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKN-QITVLPETLPPTITTLDVSRNALTNLPENLPAA  389 (754)
T ss_pred             CccccCCcc--ccccceeccccCCc-cccCChhhcCcccEEECCCC-CCCcCChhhcCCcCEEECCCCcCCCCCHhHHHH
Confidence            222222221  12578888888763 3333321 257778877776 34433211 14566676666653   1122235


Q ss_pred             ccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452          385 QCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS  425 (565)
Q Consensus       385 L~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~  425 (565)
                      |+.+++..|... ..+   ..+..+...++.+..|.+..++
T Consensus       390 L~~LdLs~N~L~-~LP---~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        390 LQIMQASRNNLV-RLP---ESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HHHHhhccCCcc-cCc---hhHHHHhhcCCCccEEEeeCCC
Confidence            666666543221 111   1244556666777777777666

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.57  E-value=9.5e-08  Score=97.28  Aligned_cols=159  Identities=18%  Similarity=0.076  Sum_probs=89.0

Q ss_pred             ccEEEEEEeccCCCCCchHHHHHHHHH-HhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCc
Q 008452          125 IQKLRIVIGVLDPEHLPPLLDKWIALA-IENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCY  201 (565)
Q Consensus       125 i~~l~l~~~~~~~~~~~~~i~~wi~~~-~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~  201 (565)
                      ++.+.+.....    ....+....... ..++++++.+....-.........++..+..+++|+.|++++|.+..  ...
T Consensus        25 L~~l~l~~~~l----~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          25 LQVLRLEGNTL----GEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             ccEEeecCCCC----cHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            66776666541    122222222211 22458888776531100001112233445567789999999887763  222


Q ss_pred             ccCC---CcCcEEEcCCeeechHHHHH---HHhcC-cCCceeEeeecCCCcc----c--ccccCcccceeEccccc-c--
Q 008452          202 AMCF---LSLKKLHLYGVYITEQMVQK---LLHEC-HFLEDLNFFECLGLKL----L--CISGAHKLKILTMETLS-S--  265 (565)
Q Consensus       202 ~~~l---~~Lk~L~L~~~~~~~~~l~~---ll~~c-p~Le~L~L~~c~~l~~----l--~i~~~~~L~~L~l~~c~-~--  265 (565)
                      +..+   ++|+.|++++|.+++.....   .+..+ ++|++|++.+|.....    +  .+..+++|+.|++++|. .  
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            3333   45999999888885444333   34455 8889999988875311    1  12335678888888875 1  


Q ss_pred             cccchh--h-cCccccEeeecCCCC
Q 008452          266 ELKGVK--I-VASSLQQLTLQFPFE  287 (565)
Q Consensus       266 ~l~~i~--~-~~p~L~~L~l~~~~~  287 (565)
                      ++..+.  + ..++|++|++++|.+
T Consensus       181 ~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         181 GIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCcc
Confidence            112222  1 346888888888765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.56  E-value=5.9e-08  Score=98.80  Aligned_cols=131  Identities=15%  Similarity=0.021  Sum_probs=70.8

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--------CCcccCCCcCcEEEcCCeeech---HH
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--------PCYAMCFLSLKKLHLYGVYITE---QM  222 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--------~~~~~~l~~Lk~L~L~~~~~~~---~~  222 (565)
                      .+++++.+....-.  ......++..+...++|+.|.++++.+..        ...+..+++|+.|+|+++.+..   ..
T Consensus        23 ~~L~~l~l~~~~l~--~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          23 LCLQVLRLEGNTLG--EEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             hhccEEeecCCCCc--HHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            35888887763211  01123455555566778888888776551        1233456778888887777732   22


Q ss_pred             HHHHHhcCcCCceeEeeecCCCc----cc--ccccC-cccceeEccccc-c--cccchh--h-cCccccEeeecCCCC
Q 008452          223 VQKLLHECHFLEDLNFFECLGLK----LL--CISGA-HKLKILTMETLS-S--ELKGVK--I-VASSLQQLTLQFPFE  287 (565)
Q Consensus       223 l~~ll~~cp~Le~L~L~~c~~l~----~l--~i~~~-~~L~~L~l~~c~-~--~l~~i~--~-~~p~L~~L~l~~~~~  287 (565)
                      +..+... ++|++|++++|....    .+  .+..+ ++|+.|++++|. .  ....+.  + .+++|++|+++++.+
T Consensus       101 ~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116         101 LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence            3333444 568888887775421    01  12223 667777777764 1  111111  1 345666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.49  E-value=6.4e-07  Score=99.86  Aligned_cols=114  Identities=20%  Similarity=0.107  Sum_probs=69.4

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL  233 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L  233 (565)
                      .+-..|++..       .....+|..+.  ++|+.|.+.+|.+...+  ...++|++|+|++|.++.  +..   ..++|
T Consensus       201 ~~~~~LdLs~-------~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP~---lp~sL  264 (788)
T PRK15387        201 NGNAVLNVGE-------SGLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LPV---LPPGL  264 (788)
T ss_pred             CCCcEEEcCC-------CCCCcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--ccC---ccccc
Confidence            4556666655       23346676554  37888888888877622  235788888888887731  221   24677


Q ss_pred             ceeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCCC
Q 008452          234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFE  287 (565)
Q Consensus       234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~  287 (565)
                      ++|++..|.. +.+.- ...+|+.|.+++|  .+..+....++|+.|++++|.+
T Consensus       265 ~~L~Ls~N~L-~~Lp~-lp~~L~~L~Ls~N--~Lt~LP~~p~~L~~LdLS~N~L  314 (788)
T PRK15387        265 LELSIFSNPL-THLPA-LPSGLCKLWIFGN--QLTSLPVLPPGLQELSVSDNQL  314 (788)
T ss_pred             ceeeccCCch-hhhhh-chhhcCEEECcCC--ccccccccccccceeECCCCcc
Confidence            8888877743 22211 1256777777776  4444444456777777777765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=6.2e-08  Score=97.51  Aligned_cols=151  Identities=17%  Similarity=0.116  Sum_probs=104.4

Q ss_pred             cCCCccEEEecCccCCC-C--CcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCcc---cccccCcc
Q 008452          182 SANFLTHLRLAGCKLEQ-P--CYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKL---LCISGAHK  254 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~-~--~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~---l~i~~~~~  254 (565)
                      +.+.|+.+.|.++.+.. +  .....|++++.|+|+++-+ .-..+..++...|+||.|+|+.|...-.   .....+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45688888888888776 2  3567899999999999988 5566778888999999999998865221   11123688


Q ss_pred             cceeEccccc---ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccc--hHHHHHHhcCCCCcceee
Q 008452          255 LKILTMETLS---SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL--GQEFCTLISKFPLLEDLS  329 (565)
Q Consensus       255 L~~L~l~~c~---~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~--~~~l~~l~~~~~~L~~L~  329 (565)
                      |+.|.+++|.   ..+..+...+|+|+.|.+.+|.. .............|+.|++++..  +.........+|.|+.|.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~-~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI-ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc-cceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            9999999996   23444555789999999988842 11122223345567777776432  222234567888888888


Q ss_pred             cccc
Q 008452          330 LFAC  333 (565)
Q Consensus       330 L~~C  333 (565)
                      +..|
T Consensus       278 ls~t  281 (505)
T KOG3207|consen  278 LSST  281 (505)
T ss_pred             cccc
Confidence            8875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.41  E-value=6.9e-08  Score=105.21  Aligned_cols=294  Identities=18%  Similarity=0.081  Sum_probs=151.3

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      ..++++.+..       ...+.+|..+.+.++|+.|.|.++.+.. |..+..+.+|..|+++.+.+..-  ...+..+..
T Consensus        68 ~~L~~ln~s~-------n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~--Pl~i~~lt~  138 (1081)
T KOG0618|consen   68 SHLRQLNLSR-------NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPI--PLVIEVLTA  138 (1081)
T ss_pred             HHHhhcccch-------hhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCC--chhHHhhhH
Confidence            3566666654       3456778888888999999999998877 88888899999999999987221  111222222


Q ss_pred             CceeEeeec-------------------CCCc---------------------ccccccCcccceeEcccccccccchhh
Q 008452          233 LEDLNFFEC-------------------LGLK---------------------LLCISGAHKLKILTMETLSSELKGVKI  272 (565)
Q Consensus       233 Le~L~L~~c-------------------~~l~---------------------~l~i~~~~~L~~L~l~~c~~~l~~i~~  272 (565)
                      ++.+..++|                   ....                     .+....+++|+.|....+  .+..+.+
T Consensus       139 ~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn--~ls~l~~  216 (1081)
T KOG0618|consen  139 EEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERN--QLSELEI  216 (1081)
T ss_pred             HHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhc--ccceEEe
Confidence            222222222                   1100                     111222334444333332  4445555


Q ss_pred             cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccccccccccc---CCcccEE
Q 008452          273 VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITIS---SNQLKHL  349 (565)
Q Consensus       273 ~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~---~~~L~~L  349 (565)
                      .-|+|+.|....|.. +  ....-..-.+|+++++++..-..+++++..|.+|+.|......- .+++..   .+.|+.|
T Consensus       217 ~g~~l~~L~a~~n~l-~--~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l  292 (1081)
T KOG0618|consen  217 SGPSLTALYADHNPL-T--TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSL  292 (1081)
T ss_pred             cCcchheeeeccCcc-e--eeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHH
Confidence            556666666666654 1  01111122356677777666666777788888888887766321 111110   0122222


Q ss_pred             eecC------------CcChhhccccCCCcccee---------------EecCCC---Cc---eecccccceeeeccccc
Q 008452          350 SLVH------------CASLKAINIDAPNLLSCN---------------FWYNPF---PI---ISINSQCSWNIHFNCQD  396 (565)
Q Consensus       350 ~L~~------------C~~L~~L~i~~p~L~~~~---------------~~g~~~---~~---~~~~sL~~~~l~~~~~~  396 (565)
                      .+.+            -..|++|++...+|.+|-               .+....   +.   .....|+.+.+..|..+
T Consensus       293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt  372 (1081)
T KOG0618|consen  293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT  372 (1081)
T ss_pred             HhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence            1111            112233333332222221               000000   00   01124555555443333


Q ss_pred             CCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcC
Q 008452          397 DHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYP  476 (565)
Q Consensus       397 ~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l  476 (565)
                      ..+-       ..+.++++|+.|+++++-..  .+|.+.-+    ..+.|++|.|..       +.+..+..-+..|++|
T Consensus       373 d~c~-------p~l~~~~hLKVLhLsyNrL~--~fpas~~~----kle~LeeL~LSG-------NkL~~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  373 DSCF-------PVLVNFKHLKVLHLSYNRLN--SFPASKLR----KLEELEELNLSG-------NKLTTLPDTVANLGRL  432 (1081)
T ss_pred             ccch-------hhhccccceeeeeecccccc--cCCHHHHh----chHHhHHHhccc-------chhhhhhHHHHhhhhh
Confidence            3332       37888999999999988755  44543211    133466666542       3444555556677777


Q ss_pred             Ceeeec
Q 008452          477 RTLSLS  482 (565)
Q Consensus       477 ~~l~l~  482 (565)
                      +||.-+
T Consensus       433 ~tL~ah  438 (1081)
T KOG0618|consen  433 HTLRAH  438 (1081)
T ss_pred             HHHhhc
Confidence            777653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.35  E-value=1.6e-08  Score=89.47  Aligned_cols=150  Identities=18%  Similarity=0.067  Sum_probs=86.1

Q ss_pred             ccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc-ccccccCcccc
Q 008452          179 TVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK-LLCISGAHKLK  256 (565)
Q Consensus       179 ~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~-~l~i~~~~~L~  256 (565)
                      .+++..+++.|.|+.+++.. ++....+.+|+.|+++++++  +.+..-++..|.|+.|++.-++... .-.++++|.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence            34555666666666666665 66666666677777666665  3344445666666666665443211 11233456666


Q ss_pred             eeEccccc---ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccc
Q 008452          257 ILTMETLS---SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFA  332 (565)
Q Consensus       257 ~L~l~~c~---~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~  332 (565)
                      .|++.++.   ..+..=-+.+..|+-|.++++.+  ...+..++.+++|+.|.+....--.++.-++.+..|++|++.+
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence            66666553   01111112345566667777764  3455567777777766665444445566666777777777776

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.29  E-value=1.8e-06  Score=96.44  Aligned_cols=113  Identities=19%  Similarity=0.084  Sum_probs=64.6

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL  233 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L  233 (565)
                      .+++.|.+..       .....+|..   .++|++|+|++|.+...+  ...++|++|+|++|.+.  .+..+   .+.|
T Consensus       222 ~~L~~L~L~~-------N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP--~lp~sL~~L~Ls~N~L~--~Lp~l---p~~L  284 (788)
T PRK15387        222 AHITTLVIPD-------NNLTSLPAL---PPELRTLEVSGNQLTSLP--VLPPGLLELSIFSNPLT--HLPAL---PSGL  284 (788)
T ss_pred             cCCCEEEccC-------CcCCCCCCC---CCCCcEEEecCCccCccc--CcccccceeeccCCchh--hhhhc---hhhc
Confidence            4788887765       233445542   468999999999887622  23568888888888662  22222   2456


Q ss_pred             ceeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCCC
Q 008452          234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFE  287 (565)
Q Consensus       234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~  287 (565)
                      +.|++.+|.. +.+.. ..++|+.|++++|.  +..+....++|+.|.+++|.+
T Consensus       285 ~~L~Ls~N~L-t~LP~-~p~~L~~LdLS~N~--L~~Lp~lp~~L~~L~Ls~N~L  334 (788)
T PRK15387        285 CKLWIFGNQL-TSLPV-LPPGLQELSVSDNQ--LASLPALPSELCKLWAYNNQL  334 (788)
T ss_pred             CEEECcCCcc-ccccc-cccccceeECCCCc--cccCCCCcccccccccccCcc
Confidence            6777766643 22221 13567777776663  333222223455555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.24  E-value=1.3e-06  Score=80.07  Aligned_cols=82  Identities=22%  Similarity=0.155  Sum_probs=31.8

Q ss_pred             cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCC--Cccc-ccccCccccee
Q 008452          182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLG--LKLL-CISGAHKLKIL  258 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~--l~~l-~i~~~~~L~~L  258 (565)
                      .+.+|+.|+|++|.+.....+..++.|++|++++|.++.-. ..+...||+|++|.+.+|..  +..+ .+..+++|+.|
T Consensus        40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            35688888888888877666777888888888888883210 12334688888888887754  2222 23345666666


Q ss_pred             Eccccc
Q 008452          259 TMETLS  264 (565)
Q Consensus       259 ~l~~c~  264 (565)
                      ++.+++
T Consensus       119 ~L~~NP  124 (175)
T PF14580_consen  119 SLEGNP  124 (175)
T ss_dssp             E-TT-G
T ss_pred             eccCCc
Confidence            666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.21  E-value=2.1e-07  Score=101.57  Aligned_cols=67  Identities=24%  Similarity=0.291  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeee
Q 008452          143 LLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYI  218 (565)
Q Consensus       143 ~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~  218 (565)
                      .++.|+..+  .+|+.+....       .....+|..++...+|+.|....|.+.. ++...++.+|++|+|..+.+
T Consensus       255 ~lp~wi~~~--~nle~l~~n~-------N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L  322 (1081)
T KOG0618|consen  255 NLPEWIGAC--ANLEALNANH-------NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL  322 (1081)
T ss_pred             cchHHHHhc--ccceEecccc-------hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence            444666643  3666666554       3345666666666777777777777766 66667799999999999887

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.19  E-value=6.2e-07  Score=88.10  Aligned_cols=212  Identities=17%  Similarity=0.178  Sum_probs=124.6

Q ss_pred             CCCCccEEEEEEeccCCCCCchHHHHHHHHHHh--CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC
Q 008452          121 LKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIE--NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ  198 (565)
Q Consensus       121 ~~~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~--~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~  198 (565)
                      ....+.++.++...     .+....+|+..++.  +.+++.+++....  + .....+|..+-..               
T Consensus        28 ~~~s~~~l~lsgnt-----~G~EAa~~i~~~L~~~~~L~~v~~sd~ft--G-R~~~Ei~e~L~~l---------------   84 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNT-----FGTEAARAIAKVLASKKELREVNLSDMFT--G-RLKDEIPEALKML---------------   84 (382)
T ss_pred             ccCceEEEeccCCc-----hhHHHHHHHHHHHhhcccceeeehHhhhc--C-CcHHHHHHHHHHH---------------
Confidence            34678888887775     37778899987775  3667666654211  0 1223344332110               


Q ss_pred             CCcccCCCcCcEEEcCCeee---chHHHHHHHhcCcCCceeEeeecCC-----------Cccc----ccccCcccceeEc
Q 008452          199 PCYAMCFLSLKKLHLYGVYI---TEQMVQKLLHECHFLEDLNFFECLG-----------LKLL----CISGAHKLKILTM  260 (565)
Q Consensus       199 ~~~~~~l~~Lk~L~L~~~~~---~~~~l~~ll~~cp~Le~L~L~~c~~-----------l~~l----~i~~~~~L~~L~l  260 (565)
                      .+...++|.|++|+|+.|.+   +-..+..++++|..|++|.|.+|..           +..+    .+.+-+.|+.+..
T Consensus        85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~  164 (382)
T KOG1909|consen   85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC  164 (382)
T ss_pred             HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence            01223445556666666655   2345677788888888888888854           1111    1223478888888


Q ss_pred             cccc---ccccch---hhcCccccEeeecCCCCCCCCc---eeecccccccccccccccc-----hHHHHHHhcCCCCcc
Q 008452          261 ETLS---SELKGV---KIVASSLQQLTLQFPFEGQGTP---VVDIAVCPNLKKFRAFNLL-----GQEFCTLISKFPLLE  326 (565)
Q Consensus       261 ~~c~---~~l~~i---~~~~p~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~~~~i~-----~~~l~~l~~~~~~L~  326 (565)
                      ..+.   .+...+   -...|+|+.+.+..|.+.....   ...+..|+.|+.|++.+.+     ...+...++.+++|+
T Consensus       165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~  244 (382)
T KOG1909|consen  165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR  244 (382)
T ss_pred             eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence            7775   122222   1256888888888877633222   1245677888877776432     134566677888888


Q ss_pred             eeecccccc--------cccccccCCcccEEeecCCc
Q 008452          327 DLSLFACSS--------FERITISSNQLKHLSLVHCA  355 (565)
Q Consensus       327 ~L~L~~C~~--------~~~l~~~~~~L~~L~L~~C~  355 (565)
                      .|.+++|..        +..+.-+.+.|++|.+.++.
T Consensus       245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             eecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence            888888821        12233345677777777664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.17  E-value=1.2e-06  Score=94.41  Aligned_cols=166  Identities=25%  Similarity=0.288  Sum_probs=103.1

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCc-cCCC------CCcccCCCcCcEEEcCCee-echHHHHH
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGC-KLEQ------PCYAMCFLSLKKLHLYGVY-ITEQMVQK  225 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c-~l~~------~~~~~~l~~Lk~L~L~~~~-~~~~~l~~  225 (565)
                      ++++++.+..+...    ....+-.....++.|++|++++| ....      ......+++|+.|+|+.+. +++.++..
T Consensus       188 ~~L~~l~l~~~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKI----TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             chhhHhhhcccccC----ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            56777766653221    11113344556788888888873 2211      2344567888888888888 58888888


Q ss_pred             HHhcCcCCceeEeeecCCCccccc----ccCcccceeEccccc----ccccchhhcCccccEeeecCCCCCCCCceeecc
Q 008452          226 LLHECHFLEDLNFFECLGLKLLCI----SGAHKLKILTMETLS----SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIA  297 (565)
Q Consensus       226 ll~~cp~Le~L~L~~c~~l~~l~i----~~~~~L~~L~l~~c~----~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~  297 (565)
                      +...||+||.|.+..|..++...+    ..|++|++|++++|.    .++..+...||+|+.|.+.+..           
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-----------  332 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-----------  332 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-----------
Confidence            888888888888888876544322    237888888888887    2244444477887777665544           


Q ss_pred             cccccccccccc---cc-hHHHHHHhcCCCCcceeeccccc
Q 008452          298 VCPNLKKFRAFN---LL-GQEFCTLISKFPLLEDLSLFACS  334 (565)
Q Consensus       298 ~~~~L~~L~~~~---i~-~~~l~~l~~~~~~L~~L~L~~C~  334 (565)
                      .|+.++.+.+..   .. +.........+++|+.+.|..|.
T Consensus       333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            144555444332   22 24444455677777777777664

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.15  E-value=7.6e-07  Score=63.23  Aligned_cols=37  Identities=43%  Similarity=0.764  Sum_probs=31.3

Q ss_pred             CCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhhcc
Q 008452           33 ISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSS   69 (565)
Q Consensus        33 is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw~~   69 (565)
                      +++||++++.+||++|+.+|+++++.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            6789999999999999999999999999999987554

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.12  E-value=6.4e-06  Score=92.34  Aligned_cols=177  Identities=16%  Similarity=0.142  Sum_probs=112.5

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      .+++.|+|..       .....+|..++  ++|+.|+|++|.+.. +..  -.++|+.|+|++|.+..  +...+  ..+
T Consensus       199 ~~L~~L~Ls~-------N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~--l~~~L~~L~Ls~N~L~~--LP~~l--~s~  263 (754)
T PRK15370        199 EQITTLILDN-------NELKSLPENLQ--GNIKTLYANSNQLTSIPAT--LPDTIQEMELSINRITE--LPERL--PSA  263 (754)
T ss_pred             cCCcEEEecC-------CCCCcCChhhc--cCCCEEECCCCccccCChh--hhccccEEECcCCccCc--CChhH--hCC
Confidence            4788888876       33446777654  589999999998876 332  23589999999998731  22212  257


Q ss_pred             CceeEeeecCCCcccccccCcccceeEcccccccccchhhc-CccccEeeecCCCCCCCCceeecccccccccccccccc
Q 008452          233 LEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIV-ASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL  311 (565)
Q Consensus       233 Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~-~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~  311 (565)
                      |+.|++++|. ++.+.-.-.++|+.|++++|  .+..+... .++|+.|++++|.+..  .+..+  .++|+.|.+.+..
T Consensus       264 L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N--~Lt~LP~~lp~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~  336 (754)
T PRK15370        264 LQSLDLFHNK-ISCLPENLPEELRYLSVYDN--SIRTLPAHLPSGITHLNVQSNSLTA--LPETL--PPGLKTLEAGENA  336 (754)
T ss_pred             CCEEECcCCc-cCccccccCCCCcEEECCCC--ccccCcccchhhHHHHHhcCCcccc--CCccc--cccceeccccCCc
Confidence            9999998774 33332222368999999998  44444332 2468889998887622  22111  2567777766443


Q ss_pred             hHHHHHHhcCCCCcceeeccccccccccccc-CCcccEEeecCCc
Q 008452          312 GQEFCTLISKFPLLEDLSLFACSSFERITIS-SNQLKHLSLVHCA  355 (565)
Q Consensus       312 ~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~-~~~L~~L~L~~C~  355 (565)
                      -..++..+  .++|+.|+|++|. +..++.. .+.|+.|+|++|.
T Consensus       337 Lt~LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~  378 (754)
T PRK15370        337 LTSLPASL--PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNA  378 (754)
T ss_pred             cccCChhh--cCcccEEECCCCC-CCcCChhhcCCcCEEECCCCc
Confidence            22333222  2689999998874 3333321 2578888888873

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.11  E-value=1.2e-06  Score=86.12  Aligned_cols=192  Identities=20%  Similarity=0.230  Sum_probs=126.0

Q ss_pred             cCCCccEEEecCccCCC------CCcccCCCcCcEEEcCCeee---chHH------HHHHHhcCcCCceeEeeecCC---
Q 008452          182 SANFLTHLRLAGCKLEQ------PCYAMCFLSLKKLHLYGVYI---TEQM------VQKLLHECHFLEDLNFFECLG---  243 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~------~~~~~~l~~Lk~L~L~~~~~---~~~~------l~~ll~~cp~Le~L~L~~c~~---  243 (565)
                      ...+++.|+|+|+.+..      -....+-++|+..+++....   .++.      +...+..||.|++|+|++|..   
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            45688999999988865      22334567888888887754   2222      333356899999999999965   


Q ss_pred             -Cccc--ccccCcccceeEcccccccccch-----------------hhcCccccEeeecCCCCCCCCc---eeeccccc
Q 008452          244 -LKLL--CISGAHKLKILTMETLSSELKGV-----------------KIVASSLQQLTLQFPFEGQGTP---VVDIAVCP  300 (565)
Q Consensus       244 -l~~l--~i~~~~~L~~L~l~~c~~~l~~i-----------------~~~~p~L~~L~l~~~~~~~~~~---~~~l~~~~  300 (565)
                       +..+  -+++|..|++|.+.+|.  +...                 .-+.|.|+.+....|...+...   ...+..++
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~G--lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCG--LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCC--CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence             1111  24458999999999995  2221                 1156899999999988755442   23466778


Q ss_pred             cccccccc--ccch---HHHHHHhcCCCCcceeecccccc--ccc--cc---ccCCcccEEeecCCcCh---------hh
Q 008452          301 NLKKFRAF--NLLG---QEFCTLISKFPLLEDLSLFACSS--FER--IT---ISSNQLKHLSLVHCASL---------KA  359 (565)
Q Consensus       301 ~L~~L~~~--~i~~---~~l~~l~~~~~~L~~L~L~~C~~--~~~--l~---~~~~~L~~L~L~~C~~L---------~~  359 (565)
                      .|+.+++.  .|..   ..+..-+..|++|+.|+|.++..  .+.  +.   ...++|+.|++.+|- |         ..
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a  264 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA  264 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHH
Confidence            88876655  3333   34455678999999999998621  111  11   134678999999994 2         22


Q ss_pred             ccccCCCccceeEecCC
Q 008452          360 INIDAPNLLSCNFWYNP  376 (565)
Q Consensus       360 L~i~~p~L~~~~~~g~~  376 (565)
                      +.-.+|+|+.+++.|+.
T Consensus       265 l~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNE  281 (382)
T ss_pred             HhccCCCCceeccCcch
Confidence            22345677776666553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.09  E-value=3e-06  Score=77.72  Aligned_cols=103  Identities=18%  Similarity=0.129  Sum_probs=32.3

Q ss_pred             cCCCccEEEecCccCCCCCccc-CCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-cc-ccCccccee
Q 008452          182 SANFLTHLRLAGCKLEQPCYAM-CFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-CI-SGAHKLKIL  258 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~~~~~~-~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-~i-~~~~~L~~L  258 (565)
                      ++..+++|+|.|+.+......+ .+.+|++|+|++|.+..  ++. +..++.|++|++++|...+.- .+ ..+|+|+.|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            4557899999999887733343 57889999999998821  222 445788888888888653211 12 236788888


Q ss_pred             Eccccc-ccccchh-h-cCccccEeeecCCCC
Q 008452          259 TMETLS-SELKGVK-I-VASSLQQLTLQFPFE  287 (565)
Q Consensus       259 ~l~~c~-~~l~~i~-~-~~p~L~~L~l~~~~~  287 (565)
                      .++++. ..+..+. + .+|+|+.|++.+|++
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            887775 2333332 2 577788888877775

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.03  E-value=4.4e-06  Score=56.93  Aligned_cols=34  Identities=38%  Similarity=0.649  Sum_probs=31.5

Q ss_pred             CchHHHHHHHcCCChHHHHHHhhcchhhhhhhcc
Q 008452           36 LPTFIIHHIMSFLPAKEAARASILSKRWEKFHSS   69 (565)
Q Consensus        36 LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw~~   69 (565)
                      ||++++.+||++|+.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=4.4e-06  Score=84.43  Aligned_cols=151  Identities=16%  Similarity=0.029  Sum_probs=100.7

Q ss_pred             cCCCccEEEecCccCCCC---CcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccc
Q 008452          182 SANFLTHLRLAGCKLEQP---CYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLK  256 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~~---~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~  256 (565)
                      .+++|+.|+|+.|.+..+   ..-..+++||+|.|+.|.++...+..++..||.|+.|.|..|..+..  .+..-+..|+
T Consensus       170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            468999999999987652   22246899999999999999889999999999999999999964221  1112257899


Q ss_pred             eeEccccc-cccc--chhhcCccccEeeecCCCCCCCCcee-----ecccccccccccccccch--HHHHHHhcCCCCcc
Q 008452          257 ILTMETLS-SELK--GVKIVASSLQQLTLQFPFEGQGTPVV-----DIAVCPNLKKFRAFNLLG--QEFCTLISKFPLLE  326 (565)
Q Consensus       257 ~L~l~~c~-~~l~--~i~~~~p~L~~L~l~~~~~~~~~~~~-----~l~~~~~L~~L~~~~i~~--~~l~~l~~~~~~L~  326 (565)
                      .|+++++. -.+.  ...-..|.|+.|+++.+.+.+-..+.     .....+.|+.|.+.....  -....-+..+++|+
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK  329 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence            99999886 1122  22236788999988887762222111     123457777777653222  11122234556677


Q ss_pred             eeeccc
Q 008452          327 DLSLFA  332 (565)
Q Consensus       327 ~L~L~~  332 (565)
                      .|.+..
T Consensus       330 ~l~~~~  335 (505)
T KOG3207|consen  330 HLRITL  335 (505)
T ss_pred             hhhccc
Confidence            776543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.81  E-value=4.5e-07  Score=80.37  Aligned_cols=142  Identities=14%  Similarity=0.086  Sum_probs=103.3

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      .++..|.|+-       .....+|+.+....+|+.|.+.++.+.. |.....++.|+.|++..+++  ..+.+=+..+|.
T Consensus        33 s~ITrLtLSH-------NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~  103 (264)
T KOG0617|consen   33 SNITRLTLSH-------NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPA  103 (264)
T ss_pred             hhhhhhhccc-------CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCch
Confidence            3556666665       4567788888889999999999998888 88888999999999988766  223444677999


Q ss_pred             CceeEeeecCCCccc---ccccCcccceeEcccccccccch--hh-cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452          233 LEDLNFFECLGLKLL---CISGAHKLKILTMETLSSELKGV--KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR  306 (565)
Q Consensus       233 Le~L~L~~c~~l~~l---~i~~~~~L~~L~l~~c~~~l~~i--~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  306 (565)
                      ||.|+|.++..-...   .+.....|+.|.++++.  ++.+  .+ ...+|+.|.+.++..  ...+..++.+..|+.|+
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dnd--fe~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND--FEILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTRLRELH  179 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCC--cccCChhhhhhcceeEEeeccCch--hhCcHHHHHHHHHHHHh
Confidence            999999988642221   11125788888888874  3333  33 678888999988875  34566777888888776


Q ss_pred             cc
Q 008452          307 AF  308 (565)
Q Consensus       307 ~~  308 (565)
                      +.
T Consensus       180 iq  181 (264)
T KOG0617|consen  180 IQ  181 (264)
T ss_pred             cc
Confidence            64

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.80  E-value=5.7e-08  Score=96.67  Aligned_cols=158  Identities=20%  Similarity=0.116  Sum_probs=83.0

Q ss_pred             ccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-c
Q 008452          171 VHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-C  248 (565)
Q Consensus       171 ~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-~  248 (565)
                      .....+|+.+.....++.|..+.+++.. |+..+.+++|+.|+.+.+.+.  .+..-++.|-.|++|+..++...+.. .
T Consensus        78 n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~--el~~~i~~~~~l~dl~~~~N~i~slp~~  155 (565)
T KOG0472|consen   78 NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK--ELPDSIGRLLDLEDLDATNNQISSLPED  155 (565)
T ss_pred             chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee--ecCchHHHHhhhhhhhccccccccCchH
Confidence            4456677777777777777777776666 666677777777777777651  11222344566677766666442211 1


Q ss_pred             cccCcccceeEccccc-ccccchhhcCccccEeeecCCCCCCCCcee----------------------ecccccccccc
Q 008452          249 ISGAHKLKILTMETLS-SELKGVKIVASSLQQLTLQFPFEGQGTPVV----------------------DIAVCPNLKKF  305 (565)
Q Consensus       249 i~~~~~L~~L~l~~c~-~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~----------------------~l~~~~~L~~L  305 (565)
                      +.+|.+|..|.+.++. ..+..-.+++..|+.|+...+..  ...+.                      .|++|..|+.|
T Consensus       156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~El  233 (565)
T KOG0472|consen  156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKEL  233 (565)
T ss_pred             HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHH
Confidence            2234455555555443 11111122334444444433332  11222                      55556666655


Q ss_pred             cccccchHHHHH-HhcCCCCcceeeccc
Q 008452          306 RAFNLLGQEFCT-LISKFPLLEDLSLFA  332 (565)
Q Consensus       306 ~~~~i~~~~l~~-l~~~~~~L~~L~L~~  332 (565)
                      +.+...-+.++. ....+++|..|+|.+
T Consensus       234 h~g~N~i~~lpae~~~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  234 HVGENQIEMLPAEHLKHLNSLLVLDLRD  261 (565)
T ss_pred             HhcccHHHhhHHHHhcccccceeeeccc
Confidence            555444444443 334666666666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.77  E-value=5.1e-06  Score=89.54  Aligned_cols=39  Identities=15%  Similarity=0.242  Sum_probs=32.1

Q ss_pred             CcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhhcc
Q 008452           31 DRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSS   69 (565)
Q Consensus        31 D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw~~   69 (565)
                      +.....|+.....+..+.+..+...+..++++|......
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (482)
T KOG1947|consen   43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS   81 (482)
T ss_pred             eeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence            456788999999999999988888888889999876444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.72  E-value=1.8e-05  Score=87.92  Aligned_cols=150  Identities=20%  Similarity=0.231  Sum_probs=106.1

Q ss_pred             CCccEEEecCccCCC----CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452          184 NFLTHLRLAGCKLEQ----PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT  259 (565)
Q Consensus       184 ~~L~~L~L~~c~l~~----~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~  259 (565)
                      .+|++|+++|...-.    .....-||+|++|.+++..+....+..+..++|+|..|+|+++..-.--.++.+++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            689999998853322    2345679999999999999955568889999999999999998653333466678888887


Q ss_pred             ccccc--ccccchhh-cCccccEeeecCCCCCCCCc-----eeeccccccccccccc--ccchHHHHHHhcCCCCcceee
Q 008452          260 METLS--SELKGVKI-VASSLQQLTLQFPFEGQGTP-----VVDIAVCPNLKKFRAF--NLLGQEFCTLISKFPLLEDLS  329 (565)
Q Consensus       260 l~~c~--~~l~~i~~-~~p~L~~L~l~~~~~~~~~~-----~~~l~~~~~L~~L~~~--~i~~~~l~~l~~~~~~L~~L~  329 (565)
                      +.+-.  ....-+.+ ++.+|+.|++|.........     ...-..+|+|+.|+.+  .++.+.+..++..-|+|+.+.
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            77543  12222344 78899999998876522220     0111247888888766  567777888888788888887


Q ss_pred             cccc
Q 008452          330 LFAC  333 (565)
Q Consensus       330 L~~C  333 (565)
                      .-+|
T Consensus       282 ~~~~  285 (699)
T KOG3665|consen  282 ALDC  285 (699)
T ss_pred             hhhh
Confidence            6655

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.45  E-value=2.3e-06  Score=85.44  Aligned_cols=157  Identities=20%  Similarity=0.125  Sum_probs=99.4

Q ss_pred             cccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccc
Q 008452          172 HTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCIS  250 (565)
Q Consensus       172 ~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~  250 (565)
                      ....+|..+++|.+|..|.+.++.+.. ++...+++.|+.|+..++-+  +.+..=+++...|+.|.+..+....--.+.
T Consensus       148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef~  225 (565)
T KOG0472|consen  148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEFP  225 (565)
T ss_pred             ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCCC
Confidence            345566666666666666666666655 44444466666666666544  223333455666777777776543333566


Q ss_pred             cCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCccee
Q 008452          251 GAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDL  328 (565)
Q Consensus       251 ~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L  328 (565)
                      +|..|+.|++..+. ..+..-.. +.++|..|++.++..  ...+..+.-+++|+.|++++.+-..++.-++++ .|+.|
T Consensus       226 gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl--ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L  302 (565)
T KOG0472|consen  226 GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL--KEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFL  302 (565)
T ss_pred             ccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc--ccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeeh
Confidence            77888888877763 12222122 677788888888875  445666667777888888777666777667777 77777


Q ss_pred             ecccc
Q 008452          329 SLFAC  333 (565)
Q Consensus       329 ~L~~C  333 (565)
                      .+.+.
T Consensus       303 ~leGN  307 (565)
T KOG0472|consen  303 ALEGN  307 (565)
T ss_pred             hhcCC
Confidence            77764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.00053  Score=66.46  Aligned_cols=200  Identities=15%  Similarity=0.094  Sum_probs=132.8

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH  231 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp  231 (565)
                      ..|++++|.... ..||   -.+-..+..++.|+.|+|+.|.+.+  ........+|++|.|.+..++-......+...|
T Consensus        71 ~~v~elDL~~N~-iSdW---seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   71 TDVKELDLTGNL-ISDW---SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             hhhhhhhcccch-hccH---HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            478888887521 1122   1233334567899999999998876  222246779999999999887777888899999


Q ss_pred             CCceeEeeecCC----Ccc--cccccCcccceeEccccc----ccccchhhcCccccEeeecCCCCCCCCceeecccccc
Q 008452          232 FLEDLNFFECLG----LKL--LCISGAHKLKILTMETLS----SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPN  301 (565)
Q Consensus       232 ~Le~L~L~~c~~----l~~--l~i~~~~~L~~L~l~~c~----~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~  301 (565)
                      .+++|+++.|..    +..  ..-. .+.++.|+...|.    .....+.-..||+.++-+..+++.+..........+.
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~-s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~  225 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDW-STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPS  225 (418)
T ss_pred             hhhhhhhccchhhhhcccccccccc-chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCc
Confidence            999999998843    111  1111 2788899999986    2334445567999999999988644444445555666


Q ss_pred             ccccccc--ccchHHHHHHhcCCCCcceeecccccccccccccCCcccEEeecCCcChhhc
Q 008452          302 LKKFRAF--NLLGQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAI  360 (565)
Q Consensus       302 L~~L~~~--~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~~~~L~~L~L~~C~~L~~L  360 (565)
                      +..|.++  +|.+=.-.+-+.++|.|..|.+...+-.+.+.  +..=+.|-+...++++.|
T Consensus       226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~--~~err~llIaRL~~v~vL  284 (418)
T KOG2982|consen  226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR--GGERRFLLIARLTKVQVL  284 (418)
T ss_pred             chhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc--CCcceEEEEeeccceEEe
Confidence            6666665  34333334457789999999998865554443  233344556666666655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.26  E-value=5.8e-05  Score=72.91  Aligned_cols=69  Identities=13%  Similarity=0.131  Sum_probs=41.3

Q ss_pred             ccccccCcccccCCCccEEEecCcc--CCC--------CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeee
Q 008452          171 VHTYTLPQTVFSANFLTHLRLAGCK--LEQ--------PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFE  240 (565)
Q Consensus       171 ~~~~~lp~~l~~~~~L~~L~L~~c~--l~~--------~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~  240 (565)
                      ...|.+...+--|..|+.|..++..  +..        +.....|++|+++.++.|.-  +.+..+...=|.|+.+.+..
T Consensus       169 ~~k~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~  246 (490)
T KOG1259|consen  169 GGKYDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHN  246 (490)
T ss_pred             CCccchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch--hheeceeecCchhheeeeec
Confidence            3445555555557788888888742  211        23334577888888877743  44445555567777776654


Q ss_pred             c
Q 008452          241 C  241 (565)
Q Consensus       241 c  241 (565)
                      .
T Consensus       247 s  247 (490)
T KOG1259|consen  247 T  247 (490)
T ss_pred             c
Confidence            3

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.20  E-value=0.0001  Score=73.88  Aligned_cols=121  Identities=16%  Similarity=0.079  Sum_probs=76.9

Q ss_pred             CccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc---cccCcccceeE
Q 008452          185 FLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC---ISGAHKLKILT  259 (565)
Q Consensus       185 ~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~---i~~~~~L~~L~  259 (565)
                      .-+.++|+.|.+..  +..|..+++|+.|+|++|.++.=+ ..-+.+.+.|-.|.+.++..++++.   +.++.+|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            45888999988887  556788999999999999872211 1234556778888888876766653   33466777777


Q ss_pred             ccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccc
Q 008452          260 METLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRA  307 (565)
Q Consensus       260 l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~  307 (565)
                      +.-|. +-+..-.+ ++++|..|.+.++.+ .......+..+..++.+.+
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhl  195 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHL  195 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhh
Confidence            76653 11222223 678888888877764 2223334555555554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.09  E-value=0.0002  Score=53.58  Aligned_cols=58  Identities=21%  Similarity=0.135  Sum_probs=34.6

Q ss_pred             CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecC
Q 008452          184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECL  242 (565)
Q Consensus       184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  242 (565)
                      ++|++|.+++|.+..  +..+.++++|++|+|+++.+..- -...+.++|+|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            356777777776665  34556677777777777666210 11234566666666666653

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.00  E-value=0.00062  Score=75.93  Aligned_cols=35  Identities=23%  Similarity=0.428  Sum_probs=24.3

Q ss_pred             ccccccccccc--cchHHHHHHhcCCCCcceeecccc
Q 008452          299 CPNLKKFRAFN--LLGQEFCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       299 ~~~L~~L~~~~--i~~~~l~~l~~~~~~L~~L~L~~C  333 (565)
                      +|.|++|.+.+  ...+++..+..+||||..||++++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T  183 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT  183 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCC
Confidence            34444444432  345668888999999999999985

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.99  E-value=0.00021  Score=81.77  Aligned_cols=102  Identities=21%  Similarity=0.139  Sum_probs=68.5

Q ss_pred             cCCCccEEEecCcc--CCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCccc
Q 008452          182 SANFLTHLRLAGCK--LEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKL  255 (565)
Q Consensus       182 ~~~~L~~L~L~~c~--l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L  255 (565)
                      .|+.|++|-+.++.  +..  ...+..+|.|+.|+|++|.- ...+...++..-+|++|+++++.. +.+  .+..+.+|
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCCc-cccchHHHHHHhh
Confidence            45678888888874  333  23377889999999998643 233566677888899999888753 222  23446788


Q ss_pred             ceeEcccccccccch---hhcCccccEeeecCCC
Q 008452          256 KILTMETLSSELKGV---KIVASSLQQLTLQFPF  286 (565)
Q Consensus       256 ~~L~l~~c~~~l~~i---~~~~p~L~~L~l~~~~  286 (565)
                      .+|++.... .+..+   .-.+++|++|.+....
T Consensus       621 ~~Lnl~~~~-~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  621 IYLNLEVTG-RLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             heecccccc-ccccccchhhhcccccEEEeeccc
Confidence            888888765 32222   2247888888876554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.98  E-value=0.00038  Score=67.39  Aligned_cols=79  Identities=16%  Similarity=0.148  Sum_probs=32.4

Q ss_pred             CcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccccc-ccccchhhcCccccEeeecC
Q 008452          206 LSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS-SELKGVKIVASSLQQLTLQF  284 (565)
Q Consensus       206 ~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~-~~l~~i~~~~p~L~~L~l~~  284 (565)
                      ..|++|+|++|.+  ..+...+.-.|.++.|+++.|.....-++..+++|+.|+++++. ..+.......-|++.|.+++
T Consensus       284 q~LtelDLS~N~I--~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  284 QELTELDLSGNLI--TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhhccccccch--hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            3455555555544  11222223345555555555543222222234555555555442 11122222344445555544


Q ss_pred             CC
Q 008452          285 PF  286 (565)
Q Consensus       285 ~~  286 (565)
                      |.
T Consensus       362 N~  363 (490)
T KOG1259|consen  362 NK  363 (490)
T ss_pred             hh
Confidence            43

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.87  E-value=0.0003  Score=75.66  Aligned_cols=200  Identities=18%  Similarity=0.096  Sum_probs=112.9

Q ss_pred             cCCCCccEEEEEEeccCCCCCchHHHHHHH-HHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC
Q 008452          120 NLKFSIQKLRIVIGVLDPEHLPPLLDKWIA-LAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ  198 (565)
Q Consensus       120 ~~~~~i~~l~l~~~~~~~~~~~~~i~~wi~-~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~  198 (565)
                      ..+.+.+.|+.....   ..+...+...-. .-+....+.+.+...+.    ..++. |..++..++|+.|.|.+|.+..
T Consensus        52 ~~g~~~~~f~a~~s~---~ads~vl~qLq~i~d~lqkt~~lkl~~~pa----~~pt~-pi~ifpF~sLr~LElrg~~L~~  123 (1096)
T KOG1859|consen   52 LSGAPVDYFRAYVSD---NADSRVLEQLQRILDFLQKTKVLKLLPSPA----RDPTE-PISIFPFRSLRVLELRGCDLST  123 (1096)
T ss_pred             cCCCCCceeEEecCC---cccchHHHHHHHHHHHHhhheeeeecccCC----CCCCC-CceeccccceeeEEecCcchhh
Confidence            456778888766553   122333332211 11234667777766544    22333 8889999999999999997754


Q ss_pred             CCccc---------------------------------CCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc
Q 008452          199 PCYAM---------------------------------CFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK  245 (565)
Q Consensus       199 ~~~~~---------------------------------~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~  245 (565)
                      ..+..                                 .+..|.+.+++.|.+  ..+...+.-.|.||.|+|++|...+
T Consensus       124 ~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~  201 (1096)
T KOG1859|consen  124 AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTK  201 (1096)
T ss_pred             hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhh
Confidence            11110                                 112344444444443  1222334446778888888887654


Q ss_pred             ccccccCcccceeEccccc-ccccchhhcCccccEeeecCCCCCCCCceeeccccccccccccccc--chHHHHHHhcCC
Q 008452          246 LLCISGAHKLKILTMETLS-SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL--LGQEFCTLISKF  322 (565)
Q Consensus       246 ~l~i~~~~~L~~L~l~~c~-~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i--~~~~l~~l~~~~  322 (565)
                      .-.+..|++|++|+|+++. ..+..+....-.|.-|.+++|...   ....+.++.+|+.|+++..  .+..-...+..+
T Consensus       202 v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~---tL~gie~LksL~~LDlsyNll~~hseL~pLwsL  278 (1096)
T KOG1859|consen  202 VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALT---TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSL  278 (1096)
T ss_pred             hHHHHhcccccccccccchhccccccchhhhhheeeeecccHHH---hhhhHHhhhhhhccchhHhhhhcchhhhHHHHH
Confidence            4455557888888888874 223333332223888888887742   2335566667777766532  222222234455


Q ss_pred             CCcceeeccc
Q 008452          323 PLLEDLSLFA  332 (565)
Q Consensus       323 ~~L~~L~L~~  332 (565)
                      ..|+.|.|.+
T Consensus       279 s~L~~L~LeG  288 (1096)
T KOG1859|consen  279 SSLIVLWLEG  288 (1096)
T ss_pred             HHHHHHhhcC
Confidence            6667777766

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.84  E-value=0.00096  Score=70.18  Aligned_cols=148  Identities=19%  Similarity=0.107  Sum_probs=94.7

Q ss_pred             cccCCCccEEEecCccCCC-CCcccCCC-cCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccc-cCcccc
Q 008452          180 VFSANFLTHLRLAGCKLEQ-PCYAMCFL-SLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCIS-GAHKLK  256 (565)
Q Consensus       180 l~~~~~L~~L~L~~c~l~~-~~~~~~l~-~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~-~~~~L~  256 (565)
                      +...+.++.|.+.++.+.. ++....+. +|+.|+++.+.+.  .+..-+..+|+|+.|++..|.....-... ..+.|+
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~  189 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence            3344678888888888777 44555553 8999999888762  22234677889999998888653322221 358888


Q ss_pred             eeEcccccccccchhh--cCcc-ccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccc
Q 008452          257 ILTMETLSSELKGVKI--VASS-LQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       257 ~L~l~~c~~~l~~i~~--~~p~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C  333 (565)
                      .|.++++  .+..+..  ..++ |++|.++++..  ...+..+..+.++..+.+.+.....+...+.++++|+.|+++++
T Consensus       190 ~L~ls~N--~i~~l~~~~~~~~~L~~l~~~~N~~--~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         190 NLDLSGN--KISDLPPEIELLSALEELDLSNNSI--IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             heeccCC--ccccCchhhhhhhhhhhhhhcCCcc--eecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence            8888887  4444433  2444 88888888742  22333455555565555443333333566777778888888864

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.75  E-value=0.0013  Score=49.07  Aligned_cols=58  Identities=19%  Similarity=0.185  Sum_probs=46.0

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCccc-ccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeee
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTV-FSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI  218 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~  218 (565)
                      +++++|++..       .....+|... ..+++|++|++++|.+..  +..+.++++|++|+|++|.+
T Consensus         1 p~L~~L~l~~-------n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSN-------NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETS-------STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCC-------CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3677788766       3455677654 458999999999999987  56789999999999999853

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.0017  Score=63.04  Aligned_cols=154  Identities=16%  Similarity=0.104  Sum_probs=99.4

Q ss_pred             CcccccCCCccEEEecCccCCC----CCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCcc---cc
Q 008452          177 PQTVFSANFLTHLRLAGCKLEQ----PCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKL---LC  248 (565)
Q Consensus       177 p~~l~~~~~L~~L~L~~c~l~~----~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~---l~  248 (565)
                      +..+++...++-|.+.+|.++.    ......+..++.|+|.+|.+ +-..+..++.+.|.|+.|+|++|+.-..   +.
T Consensus        38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp  117 (418)
T KOG2982|consen   38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP  117 (418)
T ss_pred             eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence            3344444567788888888876    33345678999999999999 5556888999999999999999976332   22


Q ss_pred             cccCcccceeEccccc---ccccchhhcCccccEeeecCCCCC----CCCceeecccccccccccccccc---hHHHHHH
Q 008452          249 ISGAHKLKILTMETLS---SELKGVKIVASSLQQLTLQFPFEG----QGTPVVDIAVCPNLKKFRAFNLL---GQEFCTL  318 (565)
Q Consensus       249 i~~~~~L~~L~l~~c~---~~l~~i~~~~p~L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~~~~i~---~~~l~~l  318 (565)
                      .+ ..+|+.|.+.+..   .......-+.|.++.|+++.|...    ++.....  --+.+++|+.....   ......+
T Consensus       118 ~p-~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l  194 (418)
T KOG2982|consen  118 LP-LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKL  194 (418)
T ss_pred             cc-ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHhH
Confidence            22 3689999998865   223333347888999999888431    1111111  11234444433221   1233445


Q ss_pred             hcCCCCcceeecccc
Q 008452          319 ISKFPLLEDLSLFAC  333 (565)
Q Consensus       319 ~~~~~~L~~L~L~~C  333 (565)
                      ..-|||+..+.+..|
T Consensus       195 ~r~Fpnv~sv~v~e~  209 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEG  209 (418)
T ss_pred             HhhcccchheeeecC
Confidence            667888888888776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.59  E-value=0.0016  Score=68.55  Aligned_cols=166  Identities=19%  Similarity=0.121  Sum_probs=117.5

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCC-CccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSAN-FLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH  231 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~-~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp  231 (565)
                      ..+..+.+..       .....+|......+ +|+.|+++++.+.. +.....+++|+.|+++.+.+  ..+.......+
T Consensus       116 ~~l~~L~l~~-------n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l--~~l~~~~~~~~  186 (394)
T COG4886         116 TNLTSLDLDN-------NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL--SDLPKLLSNLS  186 (394)
T ss_pred             cceeEEecCC-------cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh--hhhhhhhhhhh
Confidence            3577777765       45667777777774 99999999999887 45778999999999999988  33444455789


Q ss_pred             CCceeEeeecCCCccccc--ccCcccceeEcccccccccchh-h-cCccccEeeecCCCCCCCCceeecccccccccccc
Q 008452          232 FLEDLNFFECLGLKLLCI--SGAHKLKILTMETLSSELKGVK-I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRA  307 (565)
Q Consensus       232 ~Le~L~L~~c~~l~~l~i--~~~~~L~~L~l~~c~~~l~~i~-~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~  307 (565)
                      .|+.|+++++.. ..+..  .....|+.|.+.++. ....+. + ...++..+.+.++..  ...+..++.+++++.|++
T Consensus       187 ~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~--~~~~~~~~~l~~l~~L~~  262 (394)
T COG4886         187 NLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKL--EDLPESIGNLSNLETLDL  262 (394)
T ss_pred             hhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCcee--eeccchhccccccceecc
Confidence            999999999865 22222  123459999998873 222222 2 667777777766664  222456778888888888


Q ss_pred             cccchHHHHHHhcCCCCcceeecccc
Q 008452          308 FNLLGQEFCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       308 ~~i~~~~l~~l~~~~~~L~~L~L~~C  333 (565)
                      .+.....+.. +....+|+.|++++.
T Consensus       263 s~n~i~~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         263 SNNQISSISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             cccccccccc-ccccCccCEEeccCc
Confidence            7554444444 778889999999874

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.42  E-value=0.001  Score=63.50  Aligned_cols=61  Identities=23%  Similarity=0.049  Sum_probs=42.4

Q ss_pred             HhcCcCCceeEeeecCCCcccccccCcccceeEccccc----ccccchhhcCccccEeeecCCCC
Q 008452          227 LHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS----SELKGVKIVASSLQQLTLQFPFE  287 (565)
Q Consensus       227 l~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~----~~l~~i~~~~p~L~~L~l~~~~~  287 (565)
                      .-....|+.|.+.++...+....+.+|+|+.|.++.++    .++......||+|+.|++++|.+
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            33445566666666655555556667888888888773    45666666789999999999986

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.42  E-value=0.0048  Score=63.88  Aligned_cols=12  Identities=33%  Similarity=0.431  Sum_probs=6.1

Q ss_pred             CCceeEeeecCC
Q 008452          232 FLEDLNFFECLG  243 (565)
Q Consensus       232 ~Le~L~L~~c~~  243 (565)
                      +|++|.+.+|..
T Consensus        95 nLe~L~Ls~Cs~  106 (426)
T PRK15386         95 GLEKLTVCHCPE  106 (426)
T ss_pred             hhhheEccCccc
Confidence            455555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.36  E-value=0.0025  Score=61.16  Aligned_cols=149  Identities=17%  Similarity=0.145  Sum_probs=77.4

Q ss_pred             CCCccEEEecCccCCC--C----CcccCCCcCcEEEcCCeee---chH------HHHHHHhcCcCCceeEeeecCCCcc-
Q 008452          183 ANFLTHLRLAGCKLEQ--P----CYAMCFLSLKKLHLYGVYI---TEQ------MVQKLLHECHFLEDLNFFECLGLKL-  246 (565)
Q Consensus       183 ~~~L~~L~L~~c~l~~--~----~~~~~l~~Lk~L~L~~~~~---~~~------~l~~ll~~cp~Le~L~L~~c~~l~~-  246 (565)
                      ...++.++|+||.+..  .    ....+-.+|+..+++....   .++      .+-..+..||+|+..+|++|..-.. 
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            3455566666665544  1    1122345556666655433   111      1223345688888888877755111 


Q ss_pred             ---c--ccccCcccceeEcccccccccch-----h------------hcCccccEeeecCCCCCCCCcee---ecccccc
Q 008452          247 ---L--CISGAHKLKILTMETLSSELKGV-----K------------IVASSLQQLTLQFPFEGQGTPVV---DIAVCPN  301 (565)
Q Consensus       247 ---l--~i~~~~~L~~L~l~~c~~~l~~i-----~------------~~~p~L~~L~l~~~~~~~~~~~~---~l~~~~~  301 (565)
                         +  -|++...|++|.+++|.  +..+     +            -+.|.|+.+....|.+.+++...   .+.+-.+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnG--lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNG--LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCC--CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence               1  13334777778777774  2222     1            14678888887777653333211   2233345


Q ss_pred             ccccccc--ccchHHHHHH----hcCCCCcceeecccc
Q 008452          302 LKKFRAF--NLLGQEFCTL----ISKFPLLEDLSLFAC  333 (565)
Q Consensus       302 L~~L~~~--~i~~~~l~~l----~~~~~~L~~L~L~~C  333 (565)
                      |+.+.+.  .|..+++..+    +..+.+|+.|+|.+.
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN  224 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN  224 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence            5555443  3444433322    345678888888774

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.32  E-value=0.00051  Score=65.97  Aligned_cols=112  Identities=21%  Similarity=0.182  Sum_probs=70.7

Q ss_pred             CCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccccc-ccccchh-h-cCccccEee
Q 008452          205 FLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS-SELKGVK-I-VASSLQQLT  281 (565)
Q Consensus       205 l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~-~~l~~i~-~-~~p~L~~L~  281 (565)
                      +.+.|+|++++|.++|-   .+...+|.||.|.|+-|...+--.+..|.+|+.|.+..+. ..+..+. + ++|+|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            45567777777766543   2345677777777777654332234447777777777654 3444443 2 789999998


Q ss_pred             ecCCCCCCC----CceeecccccccccccccccchHHHHHHh
Q 008452          282 LQFPFEGQG----TPVVDIAVCPNLKKFRAFNLLGQEFCTLI  319 (565)
Q Consensus       282 l~~~~~~~~----~~~~~l~~~~~L~~L~~~~i~~~~l~~l~  319 (565)
                      +..|+-...    +-...+..+|||+.|+...++..++...+
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~AL  136 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEAL  136 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHH
Confidence            877764111    11234567889999988878777766554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.30  E-value=0.0035  Score=63.16  Aligned_cols=58  Identities=24%  Similarity=0.285  Sum_probs=45.5

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccc-cCCCccEEEecCccCCC--CCcccCCCcCcEEEcCC-eee
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVF-SANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYG-VYI  218 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~-~~~  218 (565)
                      ++..+|+|+-       .....+|+..| ..++|+.|+|+.|.+..  +..|.++++|.+|.+.+ +.+
T Consensus        67 ~~tveirLdq-------N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   67 PETVEIRLDQ-------NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             CcceEEEecc-------CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            4667777765       34567777655 47999999999998877  77888999999998877 665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.24  E-value=0.0015  Score=74.87  Aligned_cols=190  Identities=19%  Similarity=0.201  Sum_probs=106.2

Q ss_pred             cCCCccEEEecCc-cCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-ccc-cCcccce
Q 008452          182 SANFLTHLRLAGC-KLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-CIS-GAHKLKI  257 (565)
Q Consensus       182 ~~~~L~~L~L~~c-~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-~i~-~~~~L~~  257 (565)
                      ..+.|+.|+|++| .+.. |...+.+-+||.|+|++..+.  .++.-+.+...|.+|++..+..+..+ .+. .+++|++
T Consensus       569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence            3678888888876 3333 667777888888888887763  34555666777888888877654433 122 2577888


Q ss_pred             eEcccccccccchh----hcCccccEeeecCCCCCCCCceeeccccccccccccc----ccchHHHHHHhcCCCCcceee
Q 008452          258 LTMETLSSELKGVK----IVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF----NLLGQEFCTLISKFPLLEDLS  329 (565)
Q Consensus       258 L~l~~c~~~l~~i~----~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~----~i~~~~l~~l~~~~~~L~~L~  329 (565)
                      |.+..-........    ....+|+.|......   ......+....+|.++...    ..........+..+.+|+.|.
T Consensus       647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s---~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~  723 (889)
T KOG4658|consen  647 LRLPRSALSNDKLLLKELENLEHLENLSITISS---VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELS  723 (889)
T ss_pred             EEeeccccccchhhHHhhhcccchhhheeecch---hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEE
Confidence            77765420111111    133344444332221   1111223334444422211    112233344556778899999


Q ss_pred             ccccccccccccc---------CCcccEEeecCCcChhhcc--ccCCCccceeEecCC
Q 008452          330 LFACSSFERITIS---------SNQLKHLSLVHCASLKAIN--IDAPNLLSCNFWYNP  376 (565)
Q Consensus       330 L~~C~~~~~l~~~---------~~~L~~L~L~~C~~L~~L~--i~~p~L~~~~~~g~~  376 (565)
                      +.+|...+.....         ++++..+.+.+|..++.+.  .-+|+|.++.+.++.
T Consensus       724 i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~  781 (889)
T KOG4658|consen  724 ILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR  781 (889)
T ss_pred             EEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence            9998665432211         2345555566777666654  467888888777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.18  E-value=0.0052  Score=42.47  Aligned_cols=34  Identities=24%  Similarity=0.231  Sum_probs=19.9

Q ss_pred             CccEEEecCccCCC-CCcccCCCcCcEEEcCCeee
Q 008452          185 FLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYI  218 (565)
Q Consensus       185 ~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~  218 (565)
                      +|++|.+++|.+.. ++.+..+++|+.|++++|.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            56666666666666 44456666666666666655

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.17  E-value=0.0013  Score=62.77  Aligned_cols=104  Identities=22%  Similarity=0.085  Sum_probs=72.9

Q ss_pred             cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCC--Ccccc-cccCcccce
Q 008452          182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLG--LKLLC-ISGAHKLKI  257 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~--l~~l~-i~~~~~L~~  257 (565)
                      ....|+.|++.++.+++...+..+|+||+|.++.+.. ....+..++..||+|.+|+++.|..  +..+. +..+++|.+
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            4567888888888887767777889999999999955 3455777788899999999999864  22221 223577888


Q ss_pred             eEccccc-cc----ccchhhcCccccEeeecCC
Q 008452          258 LTMETLS-SE----LKGVKIVASSLQQLTLQFP  285 (565)
Q Consensus       258 L~l~~c~-~~----l~~i~~~~p~L~~L~l~~~  285 (565)
                      |++..|. .+    -..+..-+|+|++|+-.+.
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            8888886 22    1222335677777765443

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.04  E-value=0.0062  Score=36.74  Aligned_cols=25  Identities=44%  Similarity=0.682  Sum_probs=22.7

Q ss_pred             cCcEEEcCCeee-chHHHHHHHhcCc
Q 008452          207 SLKKLHLYGVYI-TEQMVQKLLHECH  231 (565)
Q Consensus       207 ~Lk~L~L~~~~~-~~~~l~~ll~~cp  231 (565)
                      +||+|+|..+.+ ++..++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 6678999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PLN03150 hypothetical protein; Provisional

Probab=96.04  E-value=0.0092  Score=66.54  Aligned_cols=78  Identities=21%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             ccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeEcc
Q 008452          186 LTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILTME  261 (565)
Q Consensus       186 L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~  261 (565)
                      ++.|+|+++.+..  +..+..+++|+.|+|++|.+... +...+..+++|+.|+|++|...+.+  .+..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            6677777777665  55666777777777777766322 3334566777777777777553322  23445666667666


Q ss_pred             ccc
Q 008452          262 TLS  264 (565)
Q Consensus       262 ~c~  264 (565)
                      +|.
T Consensus       499 ~N~  501 (623)
T PLN03150        499 GNS  501 (623)
T ss_pred             CCc
Confidence            664

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=0.0031  Score=58.09  Aligned_cols=92  Identities=15%  Similarity=0.115  Sum_probs=67.7

Q ss_pred             ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCcccc-
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKLLC-  248 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~-  248 (565)
                      .+.+|..-..--.++.++=+++.+..  .....+++.++.|.|.+|.. +|..++.+-.-.|+||+|+|+.|+.+++-. 
T Consensus        90 ~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL  169 (221)
T KOG3864|consen   90 YFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL  169 (221)
T ss_pred             eecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence            34566543333456777777766554  55667889999999999988 889999998899999999999999877633 


Q ss_pred             --cccCcccceeEccccc
Q 008452          249 --ISGAHKLKILTMETLS  264 (565)
Q Consensus       249 --i~~~~~L~~L~l~~c~  264 (565)
                        +..+++|+.|.+.+-.
T Consensus       170 ~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  170 ACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HHHHHhhhhHHHHhcCch
Confidence              2335778877777543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.59  E-value=0.02  Score=52.83  Aligned_cols=59  Identities=24%  Similarity=0.216  Sum_probs=26.9

Q ss_pred             CCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecC
Q 008452          183 ANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECL  242 (565)
Q Consensus       183 ~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~  242 (565)
                      .+.|.+|.|.+|.+..  +.....+|+|++|.|.+|.+ .-..+.. +..||.|++|++-+++
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP  124 (233)
T ss_pred             ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence            3455555555555544  22233345555555555544 2222322 2235555555554443

>PLN03150 hypothetical protein; Provisional

Probab=95.47  E-value=0.015  Score=64.85  Aligned_cols=71  Identities=18%  Similarity=0.109  Sum_probs=59.3

Q ss_pred             cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc
Q 008452          174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK  245 (565)
Q Consensus       174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~  245 (565)
                      ..+|..+..+++|+.|+|++|.+..  +..+..+++|+.|+|++|.+... +...+..+++|+.|+|++|....
T Consensus       432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l~g  504 (623)
T PLN03150        432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLSG  504 (623)
T ss_pred             ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCcccc
Confidence            4677788889999999999999876  66789999999999999988433 34557889999999999997543

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.39  E-value=0.042  Score=57.07  Aligned_cols=35  Identities=20%  Similarity=0.540  Sum_probs=16.9

Q ss_pred             Ccceeeccccccccccccc-CCcccEEeecCCcChh
Q 008452          324 LLEDLSLFACSSFERITIS-SNQLKHLSLVHCASLK  358 (565)
Q Consensus       324 ~L~~L~L~~C~~~~~l~~~-~~~L~~L~L~~C~~L~  358 (565)
                      +|+.|.+++|..++.++.. ...|+.|.+.+|.++.
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~  108 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS  108 (426)
T ss_pred             CCcEEEccCCCCcccCCchhhhhhhheEccCccccc
Confidence            3555555555554444311 1355555555554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.34  E-value=0.018  Score=53.17  Aligned_cols=100  Identities=19%  Similarity=0.064  Sum_probs=74.1

Q ss_pred             CCccEEEecCccCCCCCcccCCCcCcEEEcCCeeec--hHHHHHHHhcCcCCceeEeeecCC--Cccc-ccccCccccee
Q 008452          184 NFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYIT--EQMVQKLLHECHFLEDLNFFECLG--LKLL-CISGAHKLKIL  258 (565)
Q Consensus       184 ~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~--~~~l~~ll~~cp~Le~L~L~~c~~--l~~l-~i~~~~~L~~L  258 (565)
                      .....++|+++.+.....+..++.|.+|.|.+|.++  +..+   ....|+|..|.|.+|..  ++++ .+.+||+|++|
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccch---hhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            456778888887776667788999999999999982  3333   34578999999999865  3333 34568999999


Q ss_pred             Eccccc----ccccchhh-cCccccEeeecCCC
Q 008452          259 TMETLS----SELKGVKI-VASSLQQLTLQFPF  286 (565)
Q Consensus       259 ~l~~c~----~~l~~i~~-~~p~L~~L~l~~~~  286 (565)
                      .+-+++    .+-....+ ..|+|+.|++..-.
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            999986    12222233 78999999987654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.34  E-value=0.029  Score=38.69  Aligned_cols=36  Identities=28%  Similarity=0.148  Sum_probs=26.0

Q ss_pred             CcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCC
Q 008452          206 LSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLG  243 (565)
Q Consensus       206 ~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~  243 (565)
                      ++|++|+|+++.++  .+...++.||+|+.|++++|..
T Consensus         1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCC
T ss_pred             CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCC
Confidence            57888999988884  2555578888888888888853

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.09  E-value=0.0027  Score=68.62  Aligned_cols=80  Identities=21%  Similarity=0.213  Sum_probs=42.2

Q ss_pred             ccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCC--CcccccccCcccceeEcccccccccch-hh-cCccc
Q 008452          202 AMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLG--LKLLCISGAHKLKILTMETLSSELKGV-KI-VASSL  277 (565)
Q Consensus       202 ~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~--l~~l~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L  277 (565)
                      ..-++.|+.|+|++|.+.+-  + .+..||.|++|+|++|..  +..+...+|. |..|.++++  .+..+ .+ ++.+|
T Consensus       183 Lqll~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN--~l~tL~gie~LksL  256 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN--ALTTLRGIENLKSL  256 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhh--H-HHHhcccccccccccchhccccccchhhhh-heeeeeccc--HHHhhhhHHhhhhh
Confidence            33456667777777666322  1 344566777777766643  3334444433 666666655  22222 22 45555


Q ss_pred             cEeeecCCCC
Q 008452          278 QQLTLQFPFE  287 (565)
Q Consensus       278 ~~L~l~~~~~  287 (565)
                      +.|++++|-+
T Consensus       257 ~~LDlsyNll  266 (1096)
T KOG1859|consen  257 YGLDLSYNLL  266 (1096)
T ss_pred             hccchhHhhh
Confidence            5555555543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.04  E-value=0.024  Score=55.82  Aligned_cols=38  Identities=29%  Similarity=0.572  Sum_probs=35.3

Q ss_pred             CCCcCCCCc----hHHHHHHHcCCChHHHHHHhhcchhhhhh
Q 008452           29 TMDRISDLP----TFIIHHIMSFLPAKEAARASILSKRWEKF   66 (565)
Q Consensus        29 ~~D~is~LP----d~vL~~ILs~L~~~d~vr~s~lSkrWr~l   66 (565)
                      ..|.|+.||    |+|-..|||||+..+++.+-.+||+|+++
T Consensus        71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            358899999    99999999999999999999999999974

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=93.89  E-value=0.005  Score=64.88  Aligned_cols=157  Identities=15%  Similarity=0.151  Sum_probs=78.9

Q ss_pred             CccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc-ccccccCcccceeEccc
Q 008452          185 FLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK-LLCISGAHKLKILTMET  262 (565)
Q Consensus       185 ~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~-~l~i~~~~~L~~L~l~~  262 (565)
                      --+..+|+.+++.. +..+..|..|..|.|+.+.+  ..+..-+.+...|..|+|+.+..-. ...+.. --|+.|-++.
T Consensus        76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~--r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~-lpLkvli~sN  152 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCI--RTIPEAICNLEALTFLDLSSNQLSHLPDGLCD-LPLKVLIVSN  152 (722)
T ss_pred             chhhhhccccccccCchHHHHHHHHHHHHHHhccc--eecchhhhhhhHHHHhhhccchhhcCChhhhc-CcceeEEEec
Confidence            33455666666665 55666666777777766655  1122223334445555555554311 011111 2355555555


Q ss_pred             cc--ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccccccccc
Q 008452          263 LS--SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERIT  340 (565)
Q Consensus       263 c~--~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~  340 (565)
                      +.  ..-..|+ ..+.|..|+.+.|.+  ...+..++.+..|+.|.........++.-+. .-.|.+||++ |+.+..|+
T Consensus       153 Nkl~~lp~~ig-~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfS-cNkis~iP  227 (722)
T KOG0532|consen  153 NKLTSLPEEIG-LLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFS-CNKISYLP  227 (722)
T ss_pred             CccccCCcccc-cchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecc-cCceeecc
Confidence            43  1112222 556666666666664  2233445555555555544333333333333 3456777776 67777777


Q ss_pred             ccCCcccEE
Q 008452          341 ISSNQLKHL  349 (565)
Q Consensus       341 ~~~~~L~~L  349 (565)
                      +...++++|
T Consensus       228 v~fr~m~~L  236 (722)
T KOG0532|consen  228 VDFRKMRHL  236 (722)
T ss_pred             hhhhhhhhh
Confidence            766444433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.72  E-value=0.072  Score=51.46  Aligned_cols=91  Identities=13%  Similarity=0.112  Sum_probs=51.9

Q ss_pred             CCccEEEEEEeccCCCCCchHHHHHHHHHHh--CCcEEEEEEeCC-CC-cC--cccccccCcccccCCCccEEEecCccC
Q 008452          123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIE--NGVKELDFQILP-DI-KD--YVHTYTLPQTVFSANFLTHLRLAGCKL  196 (565)
Q Consensus       123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~--~~l~~L~L~~~~-~~-~~--~~~~~~lp~~l~~~~~L~~L~L~~c~l  196 (565)
                      ..+..+.+++..     .+.....|+...++  +++++.+++... +. +|  +.....+.+.+..|+.|+..+|+.|.+
T Consensus        30 d~~~evdLSGNt-----igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          30 DELVEVDLSGNT-----IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             cceeEEeccCCc-----ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            456666666664     47788899987764  355555554321 10 00  011223334556788888888888877


Q ss_pred             CC--CC----cccCCCcCcEEEcCCeee
Q 008452          197 EQ--PC----YAMCFLSLKKLHLYGVYI  218 (565)
Q Consensus       197 ~~--~~----~~~~l~~Lk~L~L~~~~~  218 (565)
                      ..  ++    ..+.-..|+.|.|++|.+
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCC
Confidence            65  22    123445667777776655

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.39  E-value=0.013  Score=62.13  Aligned_cols=102  Identities=20%  Similarity=0.117  Sum_probs=56.0

Q ss_pred             cCCCccEEEecCccCCCCCc-ccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452          182 SANFLTHLRLAGCKLEQPCY-AMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT  259 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~~~~-~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~  259 (565)
                      .+++|+.|.+.++.+..... ...+++|++|+|+++.+ +-..+    ..++.|+.|++.+|.....-....+++|+.++
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLESLKSLKLLD  168 (414)
T ss_pred             cccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCccchhhhccc
Confidence            44566667776666665333 55667777777777766 22222    23444777777766543222233356666677


Q ss_pred             ccccc-ccccch-hhcCccccEeeecCCCC
Q 008452          260 METLS-SELKGV-KIVASSLQQLTLQFPFE  287 (565)
Q Consensus       260 l~~c~-~~l~~i-~~~~p~L~~L~l~~~~~  287 (565)
                      +.++. ..+... ...+++|+.+.+.++.+
T Consensus       169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  169 LSYNRIVDIENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             CCcchhhhhhhhhhhhccchHHHhccCCch
Confidence            76664 111110 13456667677766654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.69  E-value=0.071  Score=45.97  Aligned_cols=13  Identities=8%  Similarity=0.013  Sum_probs=5.2

Q ss_pred             ccCCCcCcEEEcC
Q 008452          202 AMCFLSLKKLHLY  214 (565)
Q Consensus       202 ~~~l~~Lk~L~L~  214 (565)
                      +.++.+|+.+.+.
T Consensus         8 F~~~~~l~~i~~~   20 (129)
T PF13306_consen    8 FYNCSNLESITFP   20 (129)
T ss_dssp             TTT-TT--EEEET
T ss_pred             HhCCCCCCEEEEC
Confidence            4445555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.92  E-value=0.025  Score=54.66  Aligned_cols=77  Identities=18%  Similarity=0.177  Sum_probs=58.0

Q ss_pred             CcccceeEcccccccccchhh--cCccccEeeecCCCCCCCCceeeccccccccccccc--ccchHHHHHHhcCCCCcce
Q 008452          252 AHKLKILTMETLSSELKGVKI--VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF--NLLGQEFCTLISKFPLLED  327 (565)
Q Consensus       252 ~~~L~~L~l~~c~~~l~~i~~--~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~--~i~~~~l~~l~~~~~~L~~  327 (565)
                      +.+.+.|+.++|  ++.-|.+  .+|.||.|.++-|.+.   ....+..|++|+.|.+-  .|.+-.-...+.++|+|+.
T Consensus        18 l~~vkKLNcwg~--~L~DIsic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGC--GLDDISICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCC--CccHHHHHHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            457788888998  7777766  8999999999988862   34467889999977665  3444333445789999999


Q ss_pred             eecccc
Q 008452          328 LSLFAC  333 (565)
Q Consensus       328 L~L~~C  333 (565)
                      |.|..+
T Consensus        93 LWL~EN   98 (388)
T KOG2123|consen   93 LWLDEN   98 (388)
T ss_pred             HhhccC
Confidence            999874

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=91.55  E-value=0.071  Score=56.49  Aligned_cols=80  Identities=20%  Similarity=0.044  Sum_probs=41.6

Q ss_pred             cccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCCCcccc--cccCcccc
Q 008452          180 VFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLGLKLLC--ISGAHKLK  256 (565)
Q Consensus       180 l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~--i~~~~~L~  256 (565)
                      +..+++|++|+|+++.+........++.|+.|++.+|.+ +-..+    ..++.|+.+++.+|.....-.  ...+.+|+
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~----~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~  189 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGL----ESLKSLKLLDLSYNRIVDIENDELSELISLE  189 (414)
T ss_pred             hhhhhcchheeccccccccccchhhccchhhheeccCcchhccCC----ccchhhhcccCCcchhhhhhhhhhhhccchH
Confidence            344566666666666665544555555566666666655 22212    125556666666654422111  13345566


Q ss_pred             eeEcccc
Q 008452          257 ILTMETL  263 (565)
Q Consensus       257 ~L~l~~c  263 (565)
                      .+.+.++
T Consensus       190 ~l~l~~n  196 (414)
T KOG0531|consen  190 ELDLGGN  196 (414)
T ss_pred             HHhccCC
Confidence            6666554

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=91.45  E-value=0.12  Score=50.72  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=31.1

Q ss_pred             CCcCCCCchHHHHHHHcC-----CChHHHHHHhhcchhhhh
Q 008452           30 MDRISDLPTFIIHHIMSF-----LPAKEAARASILSKRWEK   65 (565)
Q Consensus        30 ~D~is~LPd~vL~~ILs~-----L~~~d~vr~s~lSkrWr~   65 (565)
                      .+.|+.||||||..||..     |+.+++.++|+|||.|+.
T Consensus       104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            355889999999999864     567999999999999985

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.17  E-value=0.29  Score=42.06  Aligned_cols=99  Identities=14%  Similarity=0.203  Sum_probs=42.8

Q ss_pred             cCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecC-CCcccccccCccccee
Q 008452          182 SANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECL-GLKLLCISGAHKLKIL  258 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~-~l~~l~i~~~~~L~~L  258 (565)
                      .|++|+.+.+... +..  ...+.++++|+.+.+......-  -...+..|+.|+.+.+.... .+..-....+++|+.+
T Consensus        10 ~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~~~~i--~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   10 NCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNNLTSI--GDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             T-TT--EEEETST---EE-TTTTTT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCCEEEECCC-eeEeChhhccccccccccccccccccc--ceeeeeccccccccccccccccccccccccccccccc
Confidence            4567888887642 222  4556677778888877641111  11235667778888775421 1222233335677777


Q ss_pred             Ecccccccccchhh-cCccccEeeecC
Q 008452          259 TMETLSSELKGVKI-VASSLQQLTLQF  284 (565)
Q Consensus       259 ~l~~c~~~l~~i~~-~~p~L~~L~l~~  284 (565)
                      .+......+..-.+ ++ +|+.+.+.+
T Consensus        87 ~~~~~~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   87 DIPSNITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EETTT-BEEHTTTTTT--T--EEE-TT
T ss_pred             ccCccccEEchhhhcCC-CceEEEECC
Confidence            76432112222223 33 566665544

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=91.11  E-value=0.17  Score=52.03  Aligned_cols=38  Identities=26%  Similarity=0.326  Sum_probs=33.6

Q ss_pred             cCCCCchHHHHHHHcCCC-hHHHHHHhhcchhhhhhhcc
Q 008452           32 RISDLPTFIIHHIMSFLP-AKEAARASILSKRWEKFHSS   69 (565)
Q Consensus        32 ~is~LPd~vL~~ILs~L~-~~d~vr~s~lSkrWr~lw~~   69 (565)
                      ..++||+|+|..|..+|+ .-|++|.+.||+.||.....
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            378999999999999997 67999999999999986443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=88.78  E-value=0.019  Score=60.67  Aligned_cols=127  Identities=18%  Similarity=0.131  Sum_probs=72.6

Q ss_pred             ccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-ccccC
Q 008452          175 TLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-CISGA  252 (565)
Q Consensus       175 ~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-~i~~~  252 (565)
                      .+|..+.+...|+.|+|+.+.+.. +.....|| |+.|-+++++++  .+..=+..-+.|..|+.++|...+-. .+.++
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~slpsql~~l  188 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL  188 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc--cCCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence            456666677777777777777766 44444443 777777777661  11111224556667777776543221 23345


Q ss_pred             cccceeEcccccccccch--hhcCccccEeeecCCCCCCCCceeeccccccccccccc
Q 008452          253 HKLKILTMETLSSELKGV--KIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF  308 (565)
Q Consensus       253 ~~L~~L~l~~c~~~l~~i--~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~  308 (565)
                      .+|+.|.+..+.  +..+  +..+-.|..|++++|.+  ...++.|..++.|+.|.+.
T Consensus       189 ~slr~l~vrRn~--l~~lp~El~~LpLi~lDfScNki--s~iPv~fr~m~~Lq~l~Le  242 (722)
T KOG0532|consen  189 TSLRDLNVRRNH--LEDLPEELCSLPLIRLDFSCNKI--SYLPVDFRKMRHLQVLQLE  242 (722)
T ss_pred             HHHHHHHHhhhh--hhhCCHHHhCCceeeeecccCce--eecchhhhhhhhheeeeec
Confidence            677777777664  2222  11233477777777774  4455566666666655544

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=87.11  E-value=0.2  Score=35.77  Aligned_cols=39  Identities=13%  Similarity=0.197  Sum_probs=31.8

Q ss_pred             CCccccccccCcceeeeeeecccCCChhHHhhhhhhcCCCCC
Q 008452          510 HTKSWWHYLKDAKIESFKLIHGQKFNADELHQLIDEWPQVPD  551 (565)
Q Consensus       510 ~~~~~~~~lk~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (565)
                      .++|....||.|++.|   ..|...|.++++++|.+++..+.
T Consensus         8 ~p~Cl~s~Lk~v~~~~---f~g~~~e~~f~~yil~na~~Lk~   46 (51)
T PF08387_consen    8 VPECLLSHLKFVEIKG---FRGEENELEFAKYILENAPVLKK   46 (51)
T ss_pred             CccchhheeEEEEEEe---eeCcHHHHHHHHHHHhhhhhhcE
Confidence            3489999999998865   55777799999999999887654

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.97  E-value=0.14  Score=47.42  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             cchHHHHHHhcCCCCcceeeccccccccccccc----CCcccEEeecCCc
Q 008452          310 LLGQEFCTLISKFPLLEDLSLFACSSFERITIS----SNQLKHLSLVHCA  355 (565)
Q Consensus       310 i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~----~~~L~~L~L~~C~  355 (565)
                      +.|..+..+..-.++|+.|+|++|+.++.-...    .++|+.|.|.+.+
T Consensus       138 ~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  138 FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             hhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            445556666677889999999999887765443    2556666555554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.09  E-value=1.1  Score=26.07  Aligned_cols=22  Identities=27%  Similarity=0.230  Sum_probs=13.8

Q ss_pred             CCcCcEEEcCCeeechHHHHHH
Q 008452          205 FLSLKKLHLYGVYITEQMVQKL  226 (565)
Q Consensus       205 l~~Lk~L~L~~~~~~~~~l~~l  226 (565)
                      +++|++|+|++|.++++++..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            4678888888888876666554

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.59  E-value=0.5  Score=28.30  Aligned_cols=18  Identities=22%  Similarity=0.477  Sum_probs=12.3

Q ss_pred             CcCCceeEeeecCCCccc
Q 008452          230 CHFLEDLNFFECLGLKLL  247 (565)
Q Consensus       230 cp~Le~L~L~~c~~l~~l  247 (565)
                      ||+|++|+|++|..+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            677777777777766543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.83  E-value=1.2  Score=26.56  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=17.9

Q ss_pred             CCcCcEEEcCCeee-chHHHHHHH
Q 008452          205 FLSLKKLHLYGVYI-TEQMVQKLL  227 (565)
Q Consensus       205 l~~Lk~L~L~~~~~-~~~~l~~ll  227 (565)
                      |++|+.|+|++|.. +|.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            57888888888875 888887664

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=81.10  E-value=0.92  Score=32.28  Aligned_cols=37  Identities=11%  Similarity=0.009  Sum_probs=27.9

Q ss_pred             ccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEE
Q 008452          383 NSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSID  422 (565)
Q Consensus       383 ~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~  422 (565)
                      ++|+.+.+..  +.|...+ +..++++++|++.|++|+|+
T Consensus        14 s~Lk~v~~~~--f~g~~~e-~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen   14 SHLKFVEIKG--FRGEENE-LEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             heeEEEEEEe--eeCcHHH-HHHHHHHHhhhhhhcEEEEE
Confidence            4677777743  2233334 88899999999999999986

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	565
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	5e-04
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	9e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.9 bits (150), Expect = 3e-10
 Identities = 58/373 (15%), Positives = 112/373 (30%), Gaps = 58/373 (15%)

Query: 33  ISDLPTFIIHHIMSFLP-AKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHTL 91
                  +I  +M+++   K+   AS++ +RW K       +D +      +A     T 
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFK-------IDSETREHVTMALCYTATP 65

Query: 92  NALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDP------EHLPPLLD 145
           + L           RF +   L L                 G + P       +L  L  
Sbjct: 66  DRL---------SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116

Query: 146 -------------KWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLA 192
                          +A A  + ++ L                L   V     +  L + 
Sbjct: 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT----DGLLSIVTHCRKIKTLLME 172

Query: 193 GCKLEQP------CYAMCFLSLKKLHLYGVY---ITEQMVQKLLHECHFLEDLNFFECLG 243
                +         A    SL+ L+ Y      I+ + ++ +   C  L  +   +   
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232

Query: 244 LKLLCI-SGAHKLKILTMETLSSELKGVKIVASSLQQLTL---QFPFEGQGTPVVDIAVC 299
           L+L+     A  L+     +L+ ++   +   + +    L      + G     +     
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292

Query: 300 PNLKK--FRAFNLLGQEFCTLISKFPLLEDLSLFAC---SSFERITISSNQLKHLSLVHC 354
             ++K       L  ++ CTLI K P LE L           E +     QLK L +   
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352

Query: 355 ASLKAINIDAPNL 367
           A  + +  +   +
Sbjct: 353 ADEQGMEDEEGLV 365

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 38/252 (15%), Positives = 66/252 (26%), Gaps = 40/252 (15%)

Query: 166 DIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLS----LKKLHLYGVYITEQ 221
                     +P+   +  F   L   G     P            ++KL L    +  +
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 222 MVQKLLHECHFLEDLNFFECLG-------------LKLLCISGAHKLKILTMETLSSELK 268
               L+ +C  LE L     +G             LK L I      + +  E      +
Sbjct: 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368

Query: 269 GVKIVA---SSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL----------LGQEF 315
           G+  +A     L+ + +        +         NL  FR   L          L    
Sbjct: 369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428

Query: 316 CTLISKFPLLEDLSLFACS------SFERITISSNQLKHLSLVHC----ASLKAINIDAP 365
            +L+     L   + +             I   S  ++ + L +       L   +   P
Sbjct: 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488

Query: 366 NLLSCNFWYNPF 377
           NL         F
Sbjct: 489 NLQKLEMRGCCF 500

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 55/357 (15%), Positives = 103/357 (28%), Gaps = 82/357 (22%)

Query: 33  ISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHNFGCLADASGHTLN 92
              LP  ++  I S L   E  + S + KRW +  +S   L       G          +
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYR-LASDESLWQTLDLTGK-----NLHPD 62

Query: 93  ALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAI 152
                        R   +            F +Q + +   V++   L  +L +      
Sbjct: 63  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ------ 116

Query: 153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAM--CFLSLKK 210
                                    +       L +L L G +L  P         +L +
Sbjct: 117 -----------------------CSK-------LQNLSLEGLRLSDPIVNTLAKNSNLVR 146

Query: 211 LHLYGVY-ITEQMVQKLLHECHFLEDLNFFECL-----GLKLLCISGAHKLKILTMETLS 264
           L+L G    +E  +Q LL  C  L++LN   C       +++     +  +  L +    
Sbjct: 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206

Query: 265 SEL--KGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKF 322
             L    +  +      L             +D++    L           +      + 
Sbjct: 207 KNLQKSDLSTLVRRCPNLV-----------HLDLSDSVML---------KNDCFQEFFQL 246

Query: 323 PLLEDLSLFACS-----SFERITISSNQLKHLSLVHC---ASLKAINIDAPNL-LSC 370
             L+ LSL  C      +   +      LK L +       +L+ +    P+L ++C
Sbjct: 247 NYLQHLSLSRCYDIIPETLLELGEIPT-LKTLQVFGIVPDGTLQLLKEALPHLQINC 302

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 49/363 (13%), Positives = 116/363 (31%), Gaps = 43/363 (11%)

Query: 26  MDETMDRISDLPTFIIHHIMSFLPA-KEAARASILSKRWEKFHS----SFPILDFDQHNF 80
           M + +      P  ++ H+ SF+   K+    S++ K W +          I +    + 
Sbjct: 1   MQKRI--ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSP 58

Query: 81  GCLADASGH----TLNALRENREFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLD 136
             +           L       +F      +   V   +    +    ++++R+   V+ 
Sbjct: 59  ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT 118

Query: 137 PEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKL 196
            + L  +   +         K L                L     +   L  L L    +
Sbjct: 119 DDCLELIAKSFKNF------KVLVLSSCEGFST----DGLAAIAATCRNLKELDLRESDV 168

Query: 197 EQP------CYAMCFLSLKKLHLYGVY--ITEQMVQKLLHECHFLEDLNFFECLGLKLLC 248
           +         +   + SL  L++  +   ++   +++L+  C  L+ L     + L+ L 
Sbjct: 169 DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA 228

Query: 249 --ISGAHKLKILTMETLSSE-----LKGVKIVASSLQQLT-LQFPFEGQGTPVVDIA-VC 299
             +  A +L+ L     ++E       G+ +  S  ++L  L   ++     +  +  VC
Sbjct: 229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288

Query: 300 PNLKK--FRAFNLLGQEFCTLISKFPLLEDLSLFAC---SSFERITISSNQLKHLSLVHC 354
             L         +   +   L+ + P L+ L +      +  E +  +   L+ L +   
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPS 348

Query: 355 ASL 357
              
Sbjct: 349 EPF 351

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 41/198 (20%)

Query: 207 SLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECL---GLKLLCISGAHKLKILTMETL 263
            L  L+L    +    + KLL +C  L+ L   + +   GL++L  S    L+ L +   
Sbjct: 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA-STCKDLRELRVFPS 348

Query: 264 SSEL---------KGVKIVASSLQQLTLQFPFEGQGTPVVDIAV------CPNLKKFR-- 306
              +         +G+  V+    +L            + + A+       PN+ +FR  
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLES---VLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 307 ----------AFNLLGQEFCTLISKFPLLEDLSLFAC---SSFERITISSNQLKHLSLVH 353
                         L   F  ++     L  LSL        FE I   + +++ LS+  
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465

Query: 354 C----ASLKAINIDAPNL 367
                  +  +     +L
Sbjct: 466 AGDSDLGMHHVLSGCDSL 483

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 37/272 (13%), Positives = 78/272 (28%), Gaps = 57/272 (20%)

Query: 202 AMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTME 261
           +  +  L+++ L  + +T+  ++ +       + L    C G                  
Sbjct: 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF----------------- 143

Query: 262 TLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISK 321
              S   G+  +A++ + L             +D+            ++ G         
Sbjct: 144 ---ST-DGLAAIAATCRNLK-----------ELDLRESDVD------DVSGHWLSHFPDT 182

Query: 322 FPLLEDLSLFAC------SSFERITISSNQLKHLSLVHCAS---LKAINIDAPNLL---- 368
           +  L  L++         S+ ER+      LK L L        L  +   AP L     
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242

Query: 369 -SCNFWYNPFPIISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQ 427
                   P     ++   S      C                 +  ++  L++ + + Q
Sbjct: 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302

Query: 428 SLFNLYKFSRCCNSLPIQVETLRLRMVLTDIS 459
           S ++L K    C  L    + L +   + D  
Sbjct: 303 S-YDLVKLLCQCPKL----QRLWVLDYIEDAG 329

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 93/594 (15%), Positives = 170/594 (28%), Gaps = 181/594 (30%)

Query: 33  ISDLPTFII-----HHIMSFLPAKEAARA--SILSKRWEKFHSSFPILDFDQHNFGCLAD 85
           + D+P  I+      HI+    A          L  + E+    F + +  + N+  L  
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMS 96

Query: 86  A-SGHTLNALRENREFRTCLARFIDAVDL----SLSR---FCNLKFSIQKLR-----IVI 132
                        R +     R  +   +    ++SR   +  L+ ++ +LR     ++ 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 133 G------------VLDPEHLPPLLDK---WIALAIENGVKE-------LDFQILPDIKDY 170
           G            V     +   +D    W+ L   N  +        L +QI P+    
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 171 V-HTYTLPQTVFSA-NFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLH 228
             H+  +   + S    L  L      L+   Y  C L L       V    +       
Sbjct: 217 SDHSSNIKLRIHSIQAELRRL------LKSKPYENCLLVLL-----NVQ-NAKAWNAFNL 264

Query: 229 ECHFL---EDLNFFECLGLKLLC-ISGAHKLKILTMETLSSELKGV--KIVASSLQQLTL 282
            C  L         + L       IS  H    LT      E+K +  K +    Q L  
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQDL-- 318

Query: 283 QFPFEG-QGTPVVDIAVCPNLKK--------FRAFNLLGQEFCTLISKF----------P 323
             P E     P   +++     +        ++  N    +  T+I              
Sbjct: 319 --PREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNC--DKLTTIIESSLNVLEPAEYRK 373

Query: 324 LLEDLSLF---------------ACSSFERITISSNQLKHLSLV---------------- 352
           + + LS+F                      + +  N+L   SLV                
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 353 ----HCASLKAIN---IDAPNLLSCNFWYNPFPIISINSQCSWNI--HF-NCQDDHDGG- 401
                  +  A++   +D  N+       +  P          +I  H  N +       
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-SHIGHHLKNIEHPERMTL 492

Query: 402 ---WFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRL-RMVLTD 457
               FL+F  FL   +KI   S  + ++ S+ N              ++ L+  +  + D
Sbjct: 493 FRMVFLDF-RFLE--QKIRHDSTAWNASGSILNT-------------LQQLKFYKPYICD 536

Query: 458 ISPSEYEILLDGVFWICYPRTLSLSTVNKGRPFIVWLYDYLRNPAKKCCCSDHT 511
             P +YE L++                         + D+L    +   CS +T
Sbjct: 537 NDP-KYERLVNA------------------------ILDFLPKIEENLICSKYT 565

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 33/234 (14%), Positives = 67/234 (28%), Gaps = 77/234 (32%)

Query: 21  KELKMMDETMDRI-SDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPILDFDQHN 79
               +    +  I  D+    +  +++ L      + S++ K+ ++   S P +  +   
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKL-----HKYSLVEKQPKESTISIPSIYLE--- 434

Query: 80  FGCLADASGHTLNALRENREFRTCL-ARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPE 138
                         L+   E    L    +D  ++    F +                  
Sbjct: 435 --------------LKVKLENEYALHRSIVDHYNI-PKTFDSDDLI-------------- 465

Query: 139 HLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQT----VFSANFLTHLRLAGC 194
             PP LD++             +  +     + H   +       +F   FL   R    
Sbjct: 466 --PPYLDQYF------------YSHIG----H-HLKNIEHPERMTLFRMVFL-DFRFLEQ 505

Query: 195 KLEQPCYAMCFLS-----LKKLHLYGVYIT------EQMVQKLLHECHFLEDLN 237
           K+     A          L++L  Y  YI       E++V  +L    FL  + 
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL---DFLPKIE 556

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 33 ISDLPTFIIHHIMSFLPAKEAARASILSKRW 63
          ++ LP  +  +I+SFL   +  +    +  W
Sbjct: 5  LTRLPIDVQLYILSFLSPHDLCQLGSTNHYW 35

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 40.7 bits (94), Expect = 9e-04
 Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 5   SGKPSAQHPLPSCSSSKELKMMDETMDRISDLPTFIIHHIMSFLPAKEAARASIL-SKRW 63
           +G  ++        + +E +     ++ +++LP  ++  +++ LPA E  +A  L   RW
Sbjct: 25  AGAEASAEEEQLREAEEEEEAEA--VEYLAELPEPLLLRVLAELPATELVQACRLVCLRW 82

Query: 64  ----EKFHSSFPILDFDQHNFGCLADASGHTLNALRENREFRTCLAR 106
               +           +       AD             + R  L R
Sbjct: 83  KELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQFYFLSKRRRNLLR 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	565
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.59
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.59
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.55
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.5
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.49
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.47
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.47
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.46
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.45
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.41
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.41
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.4
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.39
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.36
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.3
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.3
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.3
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.2
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.2
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.11
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.1
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.03
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.0
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.98
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.97
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.97
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.97
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.96
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.96
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.94
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.88
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.83
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.78
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.71
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.66
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.58
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.55
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.52
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.52
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.51
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.5
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.46
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.46
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.38
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.31
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.27
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.19
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.99
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.88
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.77
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.76
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.75
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.75
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.62
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.6
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.39
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.39
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.18
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.13
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.78
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.48
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.92
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.92
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.72
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.23
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.27
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.69
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.58
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.52

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.92  E-value=1.6e-24  Score=238.31  Aligned_cols=299  Identities=18%  Similarity=0.213  Sum_probs=160.7

Q ss_pred             CCCchHHHHHHHcCC-ChHHHHHHhhcchhhhhhhccCC-eEEEcCCCccc-----------cc--cccCCch-hhh--h
Q 008452           34 SDLPTFIIHHIMSFL-PAKEAARASILSKRWEKFHSSFP-ILDFDQHNFGC-----------LA--DASGHTL-NAL--R   95 (565)
Q Consensus        34 s~LPd~vL~~ILs~L-~~~d~vr~s~lSkrWr~lw~~~~-~l~f~~~~~~~-----------~~--~~~~~~~-~~~--~   95 (565)
                      ++|||||+.+||+|| +.+|+++++.|||||++++.... .+.+.. .+..           +.  +..+.+. .+.  .
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~   92 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI   92 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence            389999999999999 89999999999999998753322 122111 1000           00  0000000 000  0


Q ss_pred             hhhhhhHhHHHH-HHHHHHHHhccccCCCCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCccccc
Q 008452           96 ENREFRTCLARF-IDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTY  174 (565)
Q Consensus        96 ~~~~~~~~~~~f-~~~v~~~L~~~~~~~~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~  174 (565)
                      ... .    ..+ ...+..+.    .....++.+.+....     .......|+......++++|++..+..    ....
T Consensus        93 ~~~-~----~~~~~~~l~~l~----~~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~L~~~~~----~~~~  154 (592)
T 3ogk_B           93 PEN-W----GGYVTPWVTEIS----NNLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLKLDKCSG----FTTD  154 (592)
T ss_dssp             CTT-S----CCBCHHHHHHHH----HHCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEEEESCEE----EEHH
T ss_pred             ccc-c----cccchHHHHHHH----hhCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEECcCCCC----cCHH
Confidence            000 0    000 01111111    123567888777653     234445566554444688888876321    1222


Q ss_pred             ccCcccccCCCccEEEecCccCCCC------CcccCCCcCcEEEcCCeeec---hHHHHHHHhcCcCCceeEeeecCCCc
Q 008452          175 TLPQTVFSANFLTHLRLAGCKLEQP------CYAMCFLSLKKLHLYGVYIT---EQMVQKLLHECHFLEDLNFFECLGLK  245 (565)
Q Consensus       175 ~lp~~l~~~~~L~~L~L~~c~l~~~------~~~~~l~~Lk~L~L~~~~~~---~~~l~~ll~~cp~Le~L~L~~c~~l~  245 (565)
                      .++.....|++|++|+|++|.+.+.      .....+++|++|+|+++.++   ...+..++.+||+|++|++.+|....
T Consensus       155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            3444445688999999999876541      12346889999999888774   56788888889999999998875422


Q ss_pred             cc-ccccCcccceeEccccccc----ccchhh-cCccccEeeecCCCCCCCCceeeccccccccccccc--ccchHHHHH
Q 008452          246 LL-CISGAHKLKILTMETLSSE----LKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF--NLLGQEFCT  317 (565)
Q Consensus       246 ~l-~i~~~~~L~~L~l~~c~~~----l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~--~i~~~~l~~  317 (565)
                      .. .+..+++|+.|.+..+...    .....+ .+++|+.|.+++..  ....+..+..+++|+.|++.  .+++..+..
T Consensus       235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~  312 (592)
T 3ogk_B          235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYALLETEDHCT  312 (592)
T ss_dssp             GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred             HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence            10 1223566666666543200    000111 34555555555532  23333444555555555544  234444445


Q ss_pred             HhcCCCCcceeecccccc---cccccccCCcccEEeecC
Q 008452          318 LISKFPLLEDLSLFACSS---FERITISSNQLKHLSLVH  353 (565)
Q Consensus       318 l~~~~~~L~~L~L~~C~~---~~~l~~~~~~L~~L~L~~  353 (565)
                      ++..+++|+.|++.++..   +..+...+++|+.|++.+
T Consensus       313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~  351 (592)
T 3ogk_B          313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER  351 (592)
T ss_dssp             HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             HHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence            555556666665553311   111222345555555553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=5.8e-24  Score=233.80  Aligned_cols=218  Identities=15%  Similarity=0.190  Sum_probs=112.5

Q ss_pred             CCCcCCCCchHHHHHHHcCCC-hHHHHHHhhcchhhhhhhc-cCCeEEEcCCCccc----------cc--cccCCc-hhh
Q 008452           29 TMDRISDLPTFIIHHIMSFLP-AKEAARASILSKRWEKFHS-SFPILDFDQHNFGC----------LA--DASGHT-LNA   93 (565)
Q Consensus        29 ~~D~is~LPd~vL~~ILs~L~-~~d~vr~s~lSkrWr~lw~-~~~~l~f~~~~~~~----------~~--~~~~~~-~~~   93 (565)
                      ..|+++.|||||+.+||+||+ .+|+++++.|||||+++.. ....+.+.......          +.  +..+.. ..+
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~   81 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD   81 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence            358999999999999999999 9999999999999998721 12223332211000          00  000000 000


Q ss_pred             hhhh-hhhhHhHHHHHHHHHHHHhccccCCCCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCccc
Q 008452           94 LREN-REFRTCLARFIDAVDLSLSRFCNLKFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVH  172 (565)
Q Consensus        94 ~~~~-~~~~~~~~~f~~~v~~~L~~~~~~~~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~  172 (565)
                      +.-. ....   ..+...+..+.    .....++.+.+....    .....+.. +.. ..+++++|++..+..    ..
T Consensus        82 ~~l~~~~~~---~~~~~~l~~l~----~~~~~L~~L~L~~~~----~~~~~~~~-l~~-~~~~L~~L~L~~~~~----~~  144 (594)
T 2p1m_B           82 FNLVPDGWG---GYVYPWIEAMS----SSYTWLEEIRLKRMV----VTDDCLEL-IAK-SFKNFKVLVLSSCEG----FS  144 (594)
T ss_dssp             GTCSCTTSC---CBCHHHHHHHH----HHCTTCCEEEEESCB----CCHHHHHH-HHH-HCTTCCEEEEESCEE----EE
T ss_pred             ccccccccc---chhhHHHHHHH----HhCCCCCeEEeeCcE----EcHHHHHH-HHH-hCCCCcEEeCCCcCC----CC
Confidence            0000 0000   00001111111    123456776666553    11222211 111 135777777765311    11


Q ss_pred             ccccCcccccCCCccEEEecCccCCC------CCcccCCCcCcEEEcCCee--echHHHHHHHhcCcCCceeEeeecCCC
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ------PCYAMCFLSLKKLHLYGVY--ITEQMVQKLLHECHFLEDLNFFECLGL  244 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~------~~~~~~l~~Lk~L~L~~~~--~~~~~l~~ll~~cp~Le~L~L~~c~~l  244 (565)
                      ...++.....|++|++|+|++|.+..      ......+++|++|+|+++.  +++..+..++..||+|+.|+|.+|..+
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            22244444467888888888887554      1122367788888888886  466778888788888888888888554


Q ss_pred             cccc--cccCcccceeEcccc
Q 008452          245 KLLC--ISGAHKLKILTMETL  263 (565)
Q Consensus       245 ~~l~--i~~~~~L~~L~l~~c  263 (565)
                      +.+.  +..+++|+.|.+..|
T Consensus       225 ~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          225 EKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHHHHHHHHCTTCSEEECSBC
T ss_pred             HHHHHHHhcCCcceEcccccc
Confidence            3321  223567777765544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1e-21  Score=200.18  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=34.8

Q ss_pred             CcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhh
Q 008452           31 DRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFH   67 (565)
Q Consensus        31 D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw   67 (565)
                      ..+++|||||+.+||+||+.+|+++++.|||+|+++.
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~   43 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            3589999999999999999999999999999999985

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.59  E-value=1.7e-14  Score=147.34  Aligned_cols=249  Identities=14%  Similarity=0.081  Sum_probs=119.2

Q ss_pred             cccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452          180 VFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT  259 (565)
Q Consensus       180 l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~  259 (565)
                      +..+++|++|++++|.+...+.+..+++|++|+|+++.+++-  . .+..+++|++|++++|.....-.+..+++|+.|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~  138 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLN  138 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred             hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECcCCcccCchhhccCCceeEEE
Confidence            445566666666666665522255666666666666655221  1 2455666666666666542222244456666666


Q ss_pred             cccccccccch-hh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccc
Q 008452          260 METLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFE  337 (565)
Q Consensus       260 l~~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~  337 (565)
                      +++|. ....+ .+ .+++|++|+++++.+....   .++.+++|+.|++.+..-..+.. +..+++|+.|++.+|....
T Consensus       139 l~~n~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~  213 (347)
T 4fmz_A          139 LGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD  213 (347)
T ss_dssp             CTTCT-TCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred             CCCCC-CcccccchhhCCCCcEEEecCCCcCCch---hhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCC
Confidence            66664 11111 12 5566666666666542111   15555666655554321111111 4555666666666552211


Q ss_pred             cc-cccCCcccEEeecCCcChhhcc--ccCCCccceeEecCCC-C---ceecccccceeeecccccCCCCcccchHHHHH
Q 008452          338 RI-TISSNQLKHLSLVHCASLKAIN--IDAPNLLSCNFWYNPF-P---IISINSQCSWNIHFNCQDDHDGGWFLNFKDFL  410 (565)
Q Consensus       338 ~l-~~~~~~L~~L~L~~C~~L~~L~--i~~p~L~~~~~~g~~~-~---~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l  410 (565)
                      .. ...+++|+.|++++|. +..+.  -..++|+.+.++++.. .   +....+|+.+++..+..    .+    + ..+
T Consensus       214 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l----~~----~-~~~  283 (347)
T 4fmz_A          214 ITPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI----SD----I-SVL  283 (347)
T ss_dssp             CGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC----CC----C-GGG
T ss_pred             CchhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCcc----CC----C-hhh
Confidence            11 1233556666655553 11111  1234555555555433 1   11223555555544211    11    1 135


Q ss_pred             hhCCCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452          411 RISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR  452 (565)
Q Consensus       411 ~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~  452 (565)
                      ..+++|++|.++.+.... ..+..|..     .++++.|.+.
T Consensus       284 ~~l~~L~~L~L~~n~l~~-~~~~~l~~-----l~~L~~L~L~  319 (347)
T 4fmz_A          284 NNLSQLNSLFLNNNQLGN-EDMEVIGG-----LTNLTTLFLS  319 (347)
T ss_dssp             GGCTTCSEEECCSSCCCG-GGHHHHHT-----CTTCSEEECC
T ss_pred             cCCCCCCEEECcCCcCCC-cChhHhhc-----cccCCEEEcc
Confidence            566677777776665321 22333444     2346666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.59  E-value=1.4e-14  Score=148.02  Aligned_cols=250  Identities=17%  Similarity=0.106  Sum_probs=173.0

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      .+++++|++...       ....+|. +..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+-  .. +..+++
T Consensus        65 ~~~L~~L~l~~n-------~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~  133 (347)
T 4fmz_A           65 LTNLEYLNLNGN-------QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SP-LANLTK  133 (347)
T ss_dssp             CTTCCEEECCSS-------CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC--GG-GTTCTT
T ss_pred             cCCccEEEccCC-------ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc--hh-hccCCc
Confidence            468999988763       2233444 667889999999999888766688899999999999988322  11 678999


Q ss_pred             CceeEeeecCCCccc-ccccCcccceeEcccccccccch-hh-cCccccEeeecCCCCCCCCceeecccccccccccccc
Q 008452          233 LEDLNFFECLGLKLL-CISGAHKLKILTMETLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFN  309 (565)
Q Consensus       233 Le~L~L~~c~~l~~l-~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~  309 (565)
                      |+.|++.+|.....+ .+..+++|+.|++++|.  +..+ .+ .+++|++|++++|.+....   .+..+++|+.|++.+
T Consensus       134 L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~  208 (347)
T 4fmz_A          134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK--VKDVTPIANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAYV  208 (347)
T ss_dssp             CCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC--CCCCGGGGGCTTCSEEECTTSCCCCCG---GGGGCTTCCEEECCS
T ss_pred             eeEEECCCCCCcccccchhhCCCCcEEEecCCC--cCCchhhccCCCCCEEEccCCcccccc---cccCCCccceeeccc
Confidence            999999999765543 24557899999999885  2222 13 7889999999998863222   277788888777764


Q ss_pred             cchHHHHHHhcCCCCcceeecccccccccc-cccCCcccEEeecCCcChhhcc--ccCCCccceeEecCCCC----ceec
Q 008452          310 LLGQEFCTLISKFPLLEDLSLFACSSFERI-TISSNQLKHLSLVHCASLKAIN--IDAPNLLSCNFWYNPFP----IISI  382 (565)
Q Consensus       310 i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l-~~~~~~L~~L~L~~C~~L~~L~--i~~p~L~~~~~~g~~~~----~~~~  382 (565)
                      .....+.. +..+++|+.|++++|...... ...+++|+.|++++|. +..+.  -..++|+.+.++++...    +...
T Consensus       209 n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l  286 (347)
T 4fmz_A          209 NQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQISDISVLNNL  286 (347)
T ss_dssp             SCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             CCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCccCCChhhcCC
Confidence            32211111 678899999999987432211 2345789999988873 33322  24467888888887651    2223


Q ss_pred             ccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEeccc
Q 008452          383 NSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQ  427 (565)
Q Consensus       383 ~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~  427 (565)
                      .+|+.+++..+...       ......+.++++|++|.++.+...
T Consensus       287 ~~L~~L~L~~n~l~-------~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          287 SQLNSLFLNNNQLG-------NEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             TTCSEEECCSSCCC-------GGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             CCCCEEECcCCcCC-------CcChhHhhccccCCEEEccCCccc
Confidence            57888888653211       123457888999999999988854

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.55  E-value=1.9e-14  Score=146.18  Aligned_cols=199  Identities=20%  Similarity=0.264  Sum_probs=147.1

Q ss_pred             HHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHH
Q 008452          149 ALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLL  227 (565)
Q Consensus       149 ~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll  227 (565)
                      ......++++|++..       .....+|..++.+++|++|+|++|.+.. +..+..+++|++|+|++|.+.  .+...+
T Consensus        76 ~~~~~~~l~~L~L~~-------n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l  146 (328)
T 4fcg_A           76 EDATQPGRVALELRS-------VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASI  146 (328)
T ss_dssp             HHHTSTTCCEEEEES-------SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGG
T ss_pred             hcccccceeEEEccC-------CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHH
Confidence            334456889999887       2344788889999999999999998887 677889999999999999884  344457


Q ss_pred             hcCcCCceeEeeecCCCccccc-----------ccCcccceeEcccccccccch--hh-cCccccEeeecCCCCCCCCce
Q 008452          228 HECHFLEDLNFFECLGLKLLCI-----------SGAHKLKILTMETLSSELKGV--KI-VASSLQQLTLQFPFEGQGTPV  293 (565)
Q Consensus       228 ~~cp~Le~L~L~~c~~l~~l~i-----------~~~~~L~~L~l~~c~~~l~~i--~~-~~p~L~~L~l~~~~~~~~~~~  293 (565)
                      ..+++|++|+|++|...+.+..           ..+++|+.|++++|.  +..+  .+ .+++|++|++++|.+.  ..+
T Consensus       147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~N~l~--~l~  222 (328)
T 4fcg_A          147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG--IRSLPASIANLQNLKSLKIRNSPLS--ALG  222 (328)
T ss_dssp             GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC--CCCCCGGGGGCTTCCEEEEESSCCC--CCC
T ss_pred             hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC--cCcchHhhcCCCCCCEEEccCCCCC--cCc
Confidence            8899999999999987655421           237899999999884  3333  23 6889999999998873  234


Q ss_pred             eeccccccccccccccc-chHHHHHHhcCCCCcceeecccccccccccc---cCCcccEEeecCCcChhhc
Q 008452          294 VDIAVCPNLKKFRAFNL-LGQEFCTLISKFPLLEDLSLFACSSFERITI---SSNQLKHLSLVHCASLKAI  360 (565)
Q Consensus       294 ~~l~~~~~L~~L~~~~i-~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~---~~~~L~~L~L~~C~~L~~L  360 (565)
                      ..++.+++|+.|++.+. ....++..+.++++|+.|+|++|...+.++.   .+++|+.|+|++|..+..+
T Consensus       223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            45778888888887642 2233445567788888888888876666653   3467777888877655444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=155.34  Aligned_cols=239  Identities=18%  Similarity=0.081  Sum_probs=123.5

Q ss_pred             cccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCc
Q 008452          178 QTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAH  253 (565)
Q Consensus       178 ~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~  253 (565)
                      ..+..+++|++|+|++|.+..  +..+.++++|++|+|+++.++.- ....+.++++|++|+|++|.....  -.+..++
T Consensus        50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccc
Confidence            345556677777777766655  44566677777777776665211 112245567777777776654221  1234466


Q ss_pred             ccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchH-HHHHHhcCCCCcceeec
Q 008452          254 KLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQ-EFCTLISKFPLLEDLSL  330 (565)
Q Consensus       254 ~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~-~l~~l~~~~~~L~~L~L  330 (565)
                      +|+.|+++++. ..+..-.+ .+++|++|++++|.+ .......++.+++|+.|++.+.... .....+..+++|+.|++
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence            77777776663 11111123 566777777776665 2222334556666666655432111 11123456667777777


Q ss_pred             cccccccccccc---CCcccEEeecCCcChhhcc----ccCCCccceeEecCCCC------ceecccccceeeecccccC
Q 008452          331 FACSSFERITIS---SNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPFP------IISINSQCSWNIHFNCQDD  397 (565)
Q Consensus       331 ~~C~~~~~l~~~---~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~~------~~~~~sL~~~~l~~~~~~~  397 (565)
                      ++|..++.+...   ..+|+.|++++|. ++.+.    -..++|+.+.++++...      +....+|+.+++..+...+
T Consensus       208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (477)
T 2id5_A          208 SHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV  286 (477)
T ss_dssp             ECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred             CCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence            766555544322   2356666666652 32222    12355666666555431      1112355556554422111


Q ss_pred             CCCcccchHHHHHhhCCCCceEEEEEecc
Q 008452          398 HDGGWFLNFKDFLRISKKIEELSIDFLSN  426 (565)
Q Consensus       398 ~~~~~l~~l~~~l~~l~~Le~L~i~~~~~  426 (565)
                      ..+       ..+.++++|++|+++.+..
T Consensus       287 ~~~-------~~~~~l~~L~~L~L~~N~l  308 (477)
T 2id5_A          287 VEP-------YAFRGLNYLRVLNVSGNQL  308 (477)
T ss_dssp             ECT-------TTBTTCTTCCEEECCSSCC
T ss_pred             ECH-------HHhcCcccCCEEECCCCcC
Confidence            111       1345566666666666553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.51  E-value=4.6e-14  Score=159.74  Aligned_cols=170  Identities=14%  Similarity=0.051  Sum_probs=114.9

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH  231 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp  231 (565)
                      .+++++|++....      .....|  ...+++|++|+|++|.+.. .+.+..+++|++|+|++|.+++. +...+..++
T Consensus       177 l~~L~~L~Ls~n~------l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~  247 (768)
T 3rgz_A          177 CGELKHLAISGNK------ISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCT  247 (768)
T ss_dssp             CTTCCEEECCSSE------EESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCS
T ss_pred             CCCCCEEECCCCc------ccccCC--cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCC
Confidence            3577777776521      111112  2578899999999998877 45588999999999999988433 445678899


Q ss_pred             CCceeEeeecCCCcccccccCcccceeEccccccccc-ch--hh--cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452          232 FLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELK-GV--KI--VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR  306 (565)
Q Consensus       232 ~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~-~i--~~--~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  306 (565)
                      +|++|++++|...+.+....+++|++|++++|.  +. .+  .+  .+++|++|++++|.+ ....+..++.+++|+.|+
T Consensus       248 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~--l~~~ip~~~~~~~~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~  324 (768)
T 3rgz_A          248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK--FTGEIPDFLSGACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLA  324 (768)
T ss_dssp             SCCEEECCSSCCEESCCCCCCTTCCEEECCSSE--EEESCCCCSCTTCTTCSEEECCSSEE-EECCCGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCcccCccCccccCCCCEEECcCCc--cCCccCHHHHhhcCcCCEEECcCCcC-CCccchHHhcCCCccEEE
Confidence            999999999976544333357888888888875  21 11  11  348888888888875 334555677778888777


Q ss_pred             ccccch--HHHHHHhcCCCCcceeeccccc
Q 008452          307 AFNLLG--QEFCTLISKFPLLEDLSLFACS  334 (565)
Q Consensus       307 ~~~i~~--~~l~~l~~~~~~L~~L~L~~C~  334 (565)
                      +.+..-  ..-...+.++++|+.|++++|.
T Consensus       325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             CCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             CCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            663321  2222335667777777777764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.50  E-value=3.3e-13  Score=143.67  Aligned_cols=60  Identities=15%  Similarity=0.118  Sum_probs=26.8

Q ss_pred             cccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecC
Q 008452          180 VFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECL  242 (565)
Q Consensus       180 l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  242 (565)
                      +..+++|++|.+++|.+...+.+..+++|++|+|+++.+.+-.  . +..+++|++|++++|.
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l~~n~  145 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLELSSNT  145 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEEEEEEE
T ss_pred             hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEECCCCc
Confidence            3444455555555554444111444555555555555441110  0 3445555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=1.1e-13  Score=157.21  Aligned_cols=279  Identities=10%  Similarity=0.035  Sum_probs=182.4

Q ss_pred             hCCcEEEEEEeCCCCc-Cccc-c---------cccCcccc--cCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCee
Q 008452          153 ENGVKELDFQILPDIK-DYVH-T---------YTLPQTVF--SANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVY  217 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~-~~~~-~---------~~lp~~l~--~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~  217 (565)
                      .+++++|+|+...-.. +.+. .         ..+|..+.  .+++|++|+|++|.+..  |..+..+++|+.|+|++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            4689999998732110 0000 0         02888887  89999999999998776  7778999999999999998


Q ss_pred             -echHHHHHHH-------hcCcCCceeEeeecCCCccc----ccccCcccceeEcccccccccch-hh-cCccccEeeec
Q 008452          218 -ITEQMVQKLL-------HECHFLEDLNFFECLGLKLL----CISGAHKLKILTMETLSSELKGV-KI-VASSLQQLTLQ  283 (565)
Q Consensus       218 -~~~~~l~~ll-------~~cp~Le~L~L~~c~~l~~l----~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L~~L~l~  283 (565)
                       ++...+..-+       ..+|+|+.|+|++|... .+    .+..+++|+.|++++|.  +..+ .+ .+++|+.|+++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~--l~~lp~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK--VRHLEAFGTNVKLTDLKLD  603 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC--CCBCCCCCTTSEESEEECC
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC--cccchhhcCCCcceEEECc
Confidence             6542233323       35669999999999764 33    34568999999999985  3333 34 68999999999


Q ss_pred             CCCCCCCCceeecccccc-cccccccccchHHHHHHhcCCC--Ccceeeccccccccccc--------ccCCcccEEeec
Q 008452          284 FPFEGQGTPVVDIAVCPN-LKKFRAFNLLGQEFCTLISKFP--LLEDLSLFACSSFERIT--------ISSNQLKHLSLV  352 (565)
Q Consensus       284 ~~~~~~~~~~~~l~~~~~-L~~L~~~~i~~~~l~~l~~~~~--~L~~L~L~~C~~~~~l~--------~~~~~L~~L~L~  352 (565)
                      +|.+.  ..+..+..+++ |+.|++.+..-..++..+...+  +|+.|+|++|...+.++        ....+|+.|+++
T Consensus       604 ~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls  681 (876)
T 4ecn_A          604 YNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS  681 (876)
T ss_dssp             SSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred             CCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence            99873  55556888888 9988887543334455555444  49999999875433222        123478888888


Q ss_pred             CCcChhhccc----cCCCccceeEecCCC---Cceecc----------cccceeeecccccCCCCcccchHHHHHh--hC
Q 008452          353 HCASLKAINI----DAPNLLSCNFWYNPF---PIISIN----------SQCSWNIHFNCQDDHDGGWFLNFKDFLR--IS  413 (565)
Q Consensus       353 ~C~~L~~L~i----~~p~L~~~~~~g~~~---~~~~~~----------sL~~~~l~~~~~~~~~~~~l~~l~~~l~--~l  413 (565)
                      ++. +..+..    ..++|+.+.++++..   +...+.          +|+.+++..|... .       +...+.  ++
T Consensus       682 ~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~-------lp~~l~~~~l  752 (876)
T 4ecn_A          682 YNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-S-------LSDDFRATTL  752 (876)
T ss_dssp             SSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-C-------CCGGGSTTTC
T ss_pred             CCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-c-------chHHhhhccC
Confidence            763 323321    346777777776654   111111          5777777654322 1       112333  67


Q ss_pred             CCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452          414 KKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR  452 (565)
Q Consensus       414 ~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~  452 (565)
                      ++|+.|+++.+....  +|..+..     .++|+.|.|.
T Consensus       753 ~~L~~L~Ls~N~L~~--lp~~l~~-----L~~L~~L~Ls  784 (876)
T 4ecn_A          753 PYLSNMDVSYNCFSS--FPTQPLN-----SSQLKAFGIR  784 (876)
T ss_dssp             TTCCEEECCSSCCSS--CCCGGGG-----CTTCCEEECC
T ss_pred             CCcCEEEeCCCCCCc--cchhhhc-----CCCCCEEECC
Confidence            788888887776552  4555554     2346666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.49  E-value=2.9e-13  Score=148.34  Aligned_cols=171  Identities=17%  Similarity=0.205  Sum_probs=85.3

Q ss_pred             cCCCccEEEecCc-cCCC---CCcccCCCcCcEEEcCCeeech---HHHHHHHhcCcCCceeEeeecC-CCcccc----c
Q 008452          182 SANFLTHLRLAGC-KLEQ---PCYAMCFLSLKKLHLYGVYITE---QMVQKLLHECHFLEDLNFFECL-GLKLLC----I  249 (565)
Q Consensus       182 ~~~~L~~L~L~~c-~l~~---~~~~~~l~~Lk~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~c~-~l~~l~----i  249 (565)
                      .+++|++|+|++| .+..   +.....+++|++|+|++|.+++   ..+..+...|++|++|++.+|. .+..-.    +
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            3556666666665 3322   1222345666666666655522   2233334455666666666554 111100    1


Q ss_pred             ccCcccceeEccccc--ccccchhhcCccccEeeecCCCC-----------------------------CCCCceeeccc
Q 008452          250 SGAHKLKILTMETLS--SELKGVKIVASSLQQLTLQFPFE-----------------------------GQGTPVVDIAV  298 (565)
Q Consensus       250 ~~~~~L~~L~l~~c~--~~l~~i~~~~p~L~~L~l~~~~~-----------------------------~~~~~~~~l~~  298 (565)
                      ..+++|++|++++|.  .++..+...+++|++|.+.++..                             .....+..+..
T Consensus       208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~  287 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV  287 (594)
T ss_dssp             HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred             HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence            124666666666663  11222222455555555433310                             00001111224


Q ss_pred             cccccccccc--ccchHHHHHHhcCCCCcceeecccccc---cccccccCCcccEEeec
Q 008452          299 CPNLKKFRAF--NLLGQEFCTLISKFPLLEDLSLFACSS---FERITISSNQLKHLSLV  352 (565)
Q Consensus       299 ~~~L~~L~~~--~i~~~~l~~l~~~~~~L~~L~L~~C~~---~~~l~~~~~~L~~L~L~  352 (565)
                      +++|+.|++.  .+++..+..++.++++|+.|++.+|..   +..+...+++|+.|++.
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence            5677766665  355666777777888888888887722   22222346778888773

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.48  E-value=1.3e-13  Score=152.76  Aligned_cols=271  Identities=9%  Similarity=0.025  Sum_probs=180.1

Q ss_pred             hCCcEEEEEEeCCCCcCcccccc------------------cCcccc--cCCCccEEEecCccCCC--CCcccCCCcCcE
Q 008452          153 ENGVKELDFQILPDIKDYVHTYT------------------LPQTVF--SANFLTHLRLAGCKLEQ--PCYAMCFLSLKK  210 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~------------------lp~~l~--~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~  210 (565)
                      .+++++|+|....       ...                  +|..+.  .+++|++|+|++|.+..  |..+..+++|++
T Consensus       205 l~~L~~L~Ls~n~-------l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          205 LTKLRQFYMGNSP-------FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             CTTCCEEEEESCC-------CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             ccCCCEEECcCCc-------cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            4689999998732       222                  899998  99999999999998776  778899999999


Q ss_pred             EEcCCee-echHHHHHHHh------cCcCCceeEeeecCCCccc----ccccCcccceeEccccccccc-ch-hh-cCcc
Q 008452          211 LHLYGVY-ITEQMVQKLLH------ECHFLEDLNFFECLGLKLL----CISGAHKLKILTMETLSSELK-GV-KI-VASS  276 (565)
Q Consensus       211 L~L~~~~-~~~~~l~~ll~------~cp~Le~L~L~~c~~l~~l----~i~~~~~L~~L~l~~c~~~l~-~i-~~-~~p~  276 (565)
                      |+|++|. ++...+..-+.      .+++|++|++.+|... .+    .+..+++|+.|++++|.  +. .+ .+ .+++
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~--l~g~ip~~~~l~~  354 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ--LEGKLPAFGSEIK  354 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC--CEEECCCCEEEEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc--CccchhhhCCCCC
Confidence            9999998 66523333333      4599999999999764 33    35568899999999985  22 22 44 6789


Q ss_pred             ccEeeecCCCCCCCCceeecccccc-cccccccccchHHHHHHhcCC--CCcceeecccccccccccc----------cC
Q 008452          277 LQQLTLQFPFEGQGTPVVDIAVCPN-LKKFRAFNLLGQEFCTLISKF--PLLEDLSLFACSSFERITI----------SS  343 (565)
Q Consensus       277 L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~~~~i~~~~l~~l~~~~--~~L~~L~L~~C~~~~~l~~----------~~  343 (565)
                      |++|++++|.+.  ..+..++.+++ |+.|++++..-..++..+...  ++|+.|++++|...+.++.          ..
T Consensus       355 L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~  432 (636)
T 4eco_A          355 LASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG  432 (636)
T ss_dssp             ESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred             CCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence            999999998862  44456778888 998887743333444444443  3899999988754433322          23


Q ss_pred             CcccEEeecCCcChhhccc----cCCCccceeEecCCCC---ceecc----------cccceeeecccccCCCCcccchH
Q 008452          344 NQLKHLSLVHCASLKAINI----DAPNLLSCNFWYNPFP---IISIN----------SQCSWNIHFNCQDDHDGGWFLNF  406 (565)
Q Consensus       344 ~~L~~L~L~~C~~L~~L~i----~~p~L~~~~~~g~~~~---~~~~~----------sL~~~~l~~~~~~~~~~~~l~~l  406 (565)
                      .+|+.|+++++. ++.+..    ..++|+.+.++++...   ...+.          +|+.+++..|... .       +
T Consensus       433 ~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~-------l  503 (636)
T 4eco_A          433 INVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K-------L  503 (636)
T ss_dssp             CCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-B-------C
T ss_pred             CCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-c-------c
Confidence            478888888763 332221    2466777777776541   11111          6677777553322 1       1


Q ss_pred             HHHH--hhCCCCceEEEEEecccccccccccccccCCCCCccceeEE
Q 008452          407 KDFL--RISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRL  451 (565)
Q Consensus       407 ~~~l--~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l  451 (565)
                      ...+  .++++|++|+++.+...  .+|..+..     .++|+.|.+
T Consensus       504 p~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~~-----l~~L~~L~L  543 (636)
T 4eco_A          504 SDDFRATTLPYLVGIDLSYNSFS--KFPTQPLN-----SSTLKGFGI  543 (636)
T ss_dssp             CGGGSTTTCTTCCEEECCSSCCS--SCCCGGGG-----CSSCCEEEC
T ss_pred             ChhhhhccCCCcCEEECCCCCCC--CcChhhhc-----CCCCCEEEC
Confidence            1223  36777777777776655  24555554     234666665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.48  E-value=3.2e-14  Score=161.01  Aligned_cols=155  Identities=16%  Similarity=0.006  Sum_probs=61.4

Q ss_pred             cCcccccCCCccEEEecCccCCC--CC--cccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--c-
Q 008452          176 LPQTVFSANFLTHLRLAGCKLEQ--PC--YAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--C-  248 (565)
Q Consensus       176 lp~~l~~~~~L~~L~L~~c~l~~--~~--~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~-  248 (565)
                      +|..+..+++|++|+|++|.+.+  +.  .+..+++|++|+|++|.+.......++..+++|++|++++|...+..  . 
T Consensus        92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  171 (768)
T 3rgz_A           92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW  171 (768)
T ss_dssp             CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred             CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence            33444444455555555444432  22  34444455555554444421111111234444455544444332111  0 


Q ss_pred             --cccCcccceeEcccccccccchh-hcCccccEeeecCCCCCCCCceeecccccccccccccccc-hHHHHHHhcCCCC
Q 008452          249 --ISGAHKLKILTMETLSSELKGVK-IVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL-GQEFCTLISKFPL  324 (565)
Q Consensus       249 --i~~~~~L~~L~l~~c~~~l~~i~-~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~-~~~l~~l~~~~~~  324 (565)
                        +..+++|++|++++|. -...+. ..+++|++|++++|.+ ....+. ++.+++|+.|++.+.. ...++..+.++++
T Consensus       172 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  248 (768)
T 3rgz_A          172 VLSDGCGELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNF-STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE  248 (768)
T ss_dssp             HHTTCCTTCCEEECCSSE-EESCCBCTTCTTCCEEECCSSCC-CSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred             hhhccCCCCCEEECCCCc-ccccCCcccCCcCCEEECcCCcC-CCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence              2334444444444443 101111 1344455555544443 111221 4444444444443211 1223334444445


Q ss_pred             cceeecccc
Q 008452          325 LEDLSLFAC  333 (565)
Q Consensus       325 L~~L~L~~C  333 (565)
                      |+.|+|++|
T Consensus       249 L~~L~Ls~n  257 (768)
T 3rgz_A          249 LKLLNISSN  257 (768)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            555555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.47  E-value=4.6e-14  Score=155.27  Aligned_cols=274  Identities=17%  Similarity=0.104  Sum_probs=182.8

Q ss_pred             CcEEEEEEeCCCCcCcccccccCcc-cccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          155 GVKELDFQILPDIKDYVHTYTLPQT-VFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       155 ~l~~L~L~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      .++++++...       ....++.. +..+++|++|++++|.+.. +..+..+++|++|+|+++.+... ....+..+++
T Consensus       255 ~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~  326 (606)
T 3t6q_A          255 SVESINLQKH-------YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPS  326 (606)
T ss_dssp             EEEEEECTTC-------CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTT
T ss_pred             ceeEEEeecC-------ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCc
Confidence            6777776552       22344443 5668999999999998887 77788899999999999988422 1234678999


Q ss_pred             CceeEeeecCCCccc---ccccCcccceeEccccc-cccc--chhh-cCccccEeeecCCCCCCCCceeecccccccccc
Q 008452          233 LEDLNFFECLGLKLL---CISGAHKLKILTMETLS-SELK--GVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKF  305 (565)
Q Consensus       233 Le~L~L~~c~~l~~l---~i~~~~~L~~L~l~~c~-~~l~--~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  305 (565)
                      |++|++.+|.....+   .+..+++|+.|++++|. ....  ...+ .+++|++|++++|.+ ....+..++.+++|+.|
T Consensus       327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L  405 (606)
T 3t6q_A          327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKTEAFKECPQLELL  405 (606)
T ss_dssp             CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC-EEECTTTTTTCTTCSEE
T ss_pred             CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC-CcCCHHHhcCCccCCeE
Confidence            999999999764333   24557999999999985 2222  2234 789999999999875 33334467788889988


Q ss_pred             ccccc--chHHHHHHhcCCCCcceeeccccccccccc---ccCCcccEEeecCCcChhhc-------cccCCCccceeEe
Q 008452          306 RAFNL--LGQEFCTLISKFPLLEDLSLFACSSFERIT---ISSNQLKHLSLVHCASLKAI-------NIDAPNLLSCNFW  373 (565)
Q Consensus       306 ~~~~i--~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L-------~i~~p~L~~~~~~  373 (565)
                      ++.+.  +.......+.++++|+.|++++|......+   ..+++|+.|+++++. +...       --..++|+.+.++
T Consensus       406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls  484 (606)
T 3t6q_A          406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLS  484 (606)
T ss_dssp             ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECT
T ss_pred             ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECC
Confidence            87643  222223346788999999999885433222   245789999998885 2211       1244678888888


Q ss_pred             cCCCC------ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccc
Q 008452          374 YNPFP------IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVE  447 (565)
Q Consensus       374 g~~~~------~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~  447 (565)
                      ++...      +....+|+.+++..|...+..       ...+.+++.| .|+++.+.... ..|..|..     .++++
T Consensus       485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~l~~L-~L~L~~N~l~~-~~~~~~~~-----l~~L~  550 (606)
T 3t6q_A          485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS-------IEALSHLKGI-YLNLASNHISI-ILPSLLPI-----LSQQR  550 (606)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCGGG-------GGGGTTCCSC-EEECCSSCCCC-CCGGGHHH-----HHTSS
T ss_pred             CCccCccChhhhccccCCCEEECCCCccCcCC-------hhHhCccccc-EEECcCCcccc-cCHhhccc-----CCCCC
Confidence            87641      223357888888764322222       2356778888 88888877441 34555555     23477


Q ss_pred             eeEEE
Q 008452          448 TLRLR  452 (565)
Q Consensus       448 ~L~l~  452 (565)
                      .|.+.
T Consensus       551 ~L~l~  555 (606)
T 3t6q_A          551 TINLR  555 (606)
T ss_dssp             EEECT
T ss_pred             EEeCC
Confidence            77764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.47  E-value=5.2e-14  Score=149.37  Aligned_cols=324  Identities=16%  Similarity=0.135  Sum_probs=193.9

Q ss_pred             HHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--C-CcccCCC----cCcEEEcCCeeechH--
Q 008452          151 AIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--P-CYAMCFL----SLKKLHLYGVYITEQ--  221 (565)
Q Consensus       151 ~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~-~~~~~l~----~Lk~L~L~~~~~~~~--  221 (565)
                      ...+++++|++..+.-.  ......++..+..+++|++|+|++|.+..  . .....++    +|++|+|++|.+++.  
T Consensus        25 ~~~~~L~~L~L~~~~l~--~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLT--EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             HHHTTCSEEEEESSCCC--HHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             hhcCCccEEEccCCCCC--HHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            34568888888874211  01122556667778889999998887755  1 1223344    688999988888543  


Q ss_pred             -HHHHHHhcCcCCceeEeeecCCCcc----cc---cccCcccceeEccccc-c--cccchh--h-cCccccEeeecCCCC
Q 008452          222 -MVQKLLHECHFLEDLNFFECLGLKL----LC---ISGAHKLKILTMETLS-S--ELKGVK--I-VASSLQQLTLQFPFE  287 (565)
Q Consensus       222 -~l~~ll~~cp~Le~L~L~~c~~l~~----l~---i~~~~~L~~L~l~~c~-~--~l~~i~--~-~~p~L~~L~l~~~~~  287 (565)
                       .+...+..+++|++|++++|.....    +.   ....++|++|++++|. .  +...+.  + .+++|++|+++++.+
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence             4556677888899999888864211    10   1113578888888885 1  111121  2 568888888888875


Q ss_pred             CCCCceeecc-----cccccccccccc--cchH---HHHHHhcCCCCcceeeccccccc----ccc----cccCCcccEE
Q 008452          288 GQGTPVVDIA-----VCPNLKKFRAFN--LLGQ---EFCTLISKFPLLEDLSLFACSSF----ERI----TISSNQLKHL  349 (565)
Q Consensus       288 ~~~~~~~~l~-----~~~~L~~L~~~~--i~~~---~l~~l~~~~~~L~~L~L~~C~~~----~~l----~~~~~~L~~L  349 (565)
                      . ......+.     ..++|+.|++.+  +++.   .+...+..+++|+.|++++|..-    ..+    ...+++|+.|
T Consensus       183 ~-~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L  261 (461)
T 1z7x_W          183 N-EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL  261 (461)
T ss_dssp             H-HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             c-hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence            2 11111121     245788777663  3433   35666778888888888887311    111    1235788888


Q ss_pred             eecCCcChhh-----cc---ccCCCccceeEecCCCC------ceec-----ccccceeeecccccCCCCcccchHHHHH
Q 008452          350 SLVHCASLKA-----IN---IDAPNLLSCNFWYNPFP------IISI-----NSQCSWNIHFNCQDDHDGGWFLNFKDFL  410 (565)
Q Consensus       350 ~L~~C~~L~~-----L~---i~~p~L~~~~~~g~~~~------~~~~-----~sL~~~~l~~~~~~~~~~~~l~~l~~~l  410 (565)
                      ++++| ++..     +.   -..++|+.+.++++...      +...     .+|+.+++..+..  ...+ ...+...+
T Consensus       262 ~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l--~~~~-~~~l~~~l  337 (461)
T 1z7x_W          262 WIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF--TAAC-CSHFSSVL  337 (461)
T ss_dssp             ECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC--BGGG-HHHHHHHH
T ss_pred             ECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC--chHH-HHHHHHHH
Confidence            88888 3432     21   13577888888877651      1111     3677777765321  1112 34467788


Q ss_pred             hhCCCCceEEEEEecccccccccccccccCC-CCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCCeeeeccCC
Q 008452          411 RISKKIEELSIDFLSNQSLFNLYKFSRCCNS-LPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLSTVN  485 (565)
Q Consensus       411 ~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~-~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~~~  485 (565)
                      .++++|++|+++.+...+.. +..+... .. ..+++++|.+...  ..+..+...+...+..+++|+++.++...
T Consensus       338 ~~~~~L~~L~Ls~n~i~~~~-~~~l~~~-l~~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          338 AQNRFLLELQISNNRLEDAG-VRELCQG-LGQPGSVLRVLWLADC--DVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHCSSCCEEECCSSBCHHHH-HHHHHHH-HTSTTCCCCEEECTTS--CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             hhCCCccEEEccCCcccccc-HHHHHHH-HcCCCCceEEEECCCC--CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            89999999999987643211 1222210 11 1235888887521  22333445666667789999999995533

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.46  E-value=2.2e-13  Score=138.32  Aligned_cols=191  Identities=18%  Similarity=0.217  Sum_probs=126.0

Q ss_pred             CCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeEc
Q 008452          184 NFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILTM  260 (565)
Q Consensus       184 ~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l  260 (565)
                      ++++.|+++++.+.. .+....+++|++|+|+++.+++..+...+..||+|++|+|++|......  .+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            677888888877666 4445677888888888888776667777888888888888887542211  2344788888888


Q ss_pred             cccc--c--cccchhhcCccccEeeecCC-CCCCCCceeeccccc-ccccccccc----cchHHHHHHhcCCCCcceeec
Q 008452          261 ETLS--S--ELKGVKIVASSLQQLTLQFP-FEGQGTPVVDIAVCP-NLKKFRAFN----LLGQEFCTLISKFPLLEDLSL  330 (565)
Q Consensus       261 ~~c~--~--~l~~i~~~~p~L~~L~l~~~-~~~~~~~~~~l~~~~-~L~~L~~~~----i~~~~l~~l~~~~~~L~~L~L  330 (565)
                      ++|.  .  ++..+...+++|++|++++| .+........+..++ +|+.|++.+    +++..++..+.++++|+.|+|
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            8874  1  12222336788888888887 541111344466777 888777653    455778888888999999999


Q ss_pred             cccccccccc----ccCCcccEEeecCCcChhhcc----ccCCCccceeEec
Q 008452          331 FACSSFERIT----ISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWY  374 (565)
Q Consensus       331 ~~C~~~~~l~----~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g  374 (565)
                      ++|..++...    ..+++|+.|++++|.++..-.    -..++|+.+.++|
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence            9986433211    245788888888886442211    1345555554444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.46  E-value=6.6e-13  Score=141.37  Aligned_cols=307  Identities=13%  Similarity=0.086  Sum_probs=191.9

Q ss_pred             CCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcc
Q 008452          123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYA  202 (565)
Q Consensus       123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~  202 (565)
                      ..++.+.+......   ...   .   ....+++++|++...       ....++. +..+++|++|+|++|.+...+.+
T Consensus        68 ~~L~~L~Ls~n~l~---~~~---~---~~~l~~L~~L~l~~n-------~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~  130 (466)
T 1o6v_A           68 NNLTQINFSNNQLT---DIT---P---LKNLTKLVDILMNNN-------QIADITP-LANLTNLTGLTLFNNQITDIDPL  130 (466)
T ss_dssp             TTCCEEECCSSCCC---CCG---G---GTTCTTCCEEECCSS-------CCCCCGG-GTTCTTCCEEECCSSCCCCCGGG
T ss_pred             cCCCEEECCCCccC---Cch---h---hhccccCCEEECCCC-------ccccChh-hcCCCCCCEEECCCCCCCCChHH
Confidence            56777777655311   111   1   223468999988763       2233444 77889999999999988884448


Q ss_pred             cCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcccccccccchh-h-cCccccEe
Q 008452          203 MCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVK-I-VASSLQQL  280 (565)
Q Consensus       203 ~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~-~-~~p~L~~L  280 (565)
                      ..+++|++|+|+++.+.+-  . -+..+++|++|++..+ ......+..+++|+.|++++|.  +..+. + .+++|++|
T Consensus       131 ~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~l~~~-~~~~~~~~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L  204 (466)
T 1o6v_A          131 KNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLSFGNQ-VTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNLESL  204 (466)
T ss_dssp             TTCTTCSEEEEEEEEECCC--G-GGTTCTTCSEEEEEES-CCCCGGGTTCTTCCEEECCSSC--CCCCGGGGGCTTCSEE
T ss_pred             cCCCCCCEEECCCCccCCC--h-hhccCCcccEeecCCc-ccCchhhccCCCCCEEECcCCc--CCCChhhccCCCCCEE
Confidence            8999999999999998332  1 2678999999998643 2222345667899999999885  22222 3 67889999


Q ss_pred             eecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccccccccc-ccCCcccEEeecCCcChhh
Q 008452          281 TLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERIT-ISSNQLKHLSLVHCASLKA  359 (565)
Q Consensus       281 ~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~-~~~~~L~~L~L~~C~~L~~  359 (565)
                      +++++.+. ...  .++.+++|+.|++.+..-..+ ..+..+++|+.|++++|...+... ..+++|+.|+++++. +..
T Consensus       205 ~l~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~  279 (466)
T 1o6v_A          205 IATNNQIS-DIT--PLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISN  279 (466)
T ss_dssp             ECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CCC
T ss_pred             EecCCccc-ccc--cccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc-cCc
Confidence            99888762 222  267788888877764322222 245678889999988874322221 245778888887764 221


Q ss_pred             cc--ccCCCccceeEecCCC----CceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEeccccccccc
Q 008452          360 IN--IDAPNLLSCNFWYNPF----PIISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLY  433 (565)
Q Consensus       360 L~--i~~p~L~~~~~~g~~~----~~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~  433 (565)
                      +.  -..++|+.+.++++..    ++....+|+.+++..+...    + ..    .+..+++|++|.++.+...+.   .
T Consensus       280 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~----~-~~----~~~~l~~L~~L~l~~n~l~~~---~  347 (466)
T 1o6v_A          280 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS----D-IS----PVSSLTKLQRLFFYNNKVSDV---S  347 (466)
T ss_dssp             CGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS----C-CG----GGGGCTTCCEEECCSSCCCCC---G
T ss_pred             cccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCC----C-ch----hhccCccCCEeECCCCccCCc---h
Confidence            11  2346777777777654    2333357788888653311    1 11    156788888888887764422   2


Q ss_pred             ccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCCeeeec
Q 008452          434 KFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLS  482 (565)
Q Consensus       434 ~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~  482 (565)
                      .+..     .++|+.|.+..    ....+..   . +..+++|+.+.++
T Consensus       348 ~l~~-----l~~L~~L~l~~----n~l~~~~---~-~~~l~~L~~L~l~  383 (466)
T 1o6v_A          348 SLAN-----LTNINWLSAGH----NQISDLT---P-LANLTRITQLGLN  383 (466)
T ss_dssp             GGTT-----CTTCCEEECCS----SCCCBCG---G-GTTCTTCCEEECC
T ss_pred             hhcc-----CCCCCEEeCCC----CccCccc---h-hhcCCCCCEEecc
Confidence            3333     33577777642    1222221   1 4567888888873

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.45  E-value=9.3e-14  Score=147.22  Aligned_cols=285  Identities=12%  Similarity=0.033  Sum_probs=152.0

Q ss_pred             ccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHH-HHHhcCcCCceeEeeecCCCccc--c-cccC
Q 008452          179 TVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQ-KLLHECHFLEDLNFFECLGLKLL--C-ISGA  252 (565)
Q Consensus       179 ~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~c~~l~~l--~-i~~~  252 (565)
                      .+..+++|++|+|++|.+..  +..+.++++|++|+|++|.+++..+. ..+..+++|++|+|++|......  . +..+
T Consensus        74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  153 (455)
T 3v47_A           74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM  153 (455)
T ss_dssp             TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred             cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence            34456677777777766654  44566667777777777666432222 22556677777777766543221  1 3445


Q ss_pred             cccceeEccccc-ccccchh---hcCccccEeeecCCCCCCCCce-------eecccccccccccccc--cchHHHHHHh
Q 008452          253 HKLKILTMETLS-SELKGVK---IVASSLQQLTLQFPFEGQGTPV-------VDIAVCPNLKKFRAFN--LLGQEFCTLI  319 (565)
Q Consensus       253 ~~L~~L~l~~c~-~~l~~i~---~~~p~L~~L~l~~~~~~~~~~~-------~~l~~~~~L~~L~~~~--i~~~~l~~l~  319 (565)
                      ++|+.|++++|. .+...-.   ...++|+.|+++++.+......       ..+..+++|+.|++++  ++......+.
T Consensus       154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  233 (455)
T 3v47_A          154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF  233 (455)
T ss_dssp             TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred             CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence            677777776664 1111111   1235666677666664221100       1122446677777663  2322222221


Q ss_pred             --cCCCCcceeecccccccccc---------------cccCCcccEEeecCCcChhhc----cccCCCccceeEecCCCC
Q 008452          320 --SKFPLLEDLSLFACSSFERI---------------TISSNQLKHLSLVHCASLKAI----NIDAPNLLSCNFWYNPFP  378 (565)
Q Consensus       320 --~~~~~L~~L~L~~C~~~~~l---------------~~~~~~L~~L~L~~C~~L~~L----~i~~p~L~~~~~~g~~~~  378 (565)
                        ...++|+.|++.+|......               .....+|+.|+++++. +..+    --..++|+.+.++++...
T Consensus       234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~  312 (455)
T 3v47_A          234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEIN  312 (455)
T ss_dssp             HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhcccCCCCCEEECCCCccc
Confidence              12377888888776322110               0112567788777763 2111    113457777777776541


Q ss_pred             ------ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452          379 ------IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR  452 (565)
Q Consensus       379 ------~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~  452 (565)
                            +....+|+.+++..+...+..       ...+.++++|++|+++.+.... ..|..|..     .++|++|.+.
T Consensus       313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~-----l~~L~~L~L~  379 (455)
T 3v47_A          313 KIDDNAFWGLTHLLKLNLSQNFLGSID-------SRMFENLDKLEVLDLSYNHIRA-LGDQSFLG-----LPNLKELALD  379 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEEC-------GGGGTTCTTCCEEECCSSCCCE-ECTTTTTT-----CTTCCEEECC
T ss_pred             ccChhHhcCcccCCEEECCCCccCCcC-------hhHhcCcccCCEEECCCCcccc-cChhhccc-----cccccEEECC
Confidence                  222357888888664322111       2356788999999998887441 23555555     3458888875


Q ss_pred             EEeecCCcchHHHHHHHHHhhhcCCeeeecc
Q 008452          453 MVLTDISPSEYEILLDGVFWICYPRTLSLST  483 (565)
Q Consensus       453 ~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~  483 (565)
                      .. .......     ..+..+++|+++.++.
T Consensus       380 ~N-~l~~~~~-----~~~~~l~~L~~L~l~~  404 (455)
T 3v47_A          380 TN-QLKSVPD-----GIFDRLTSLQKIWLHT  404 (455)
T ss_dssp             SS-CCSCCCT-----TTTTTCTTCCEEECCS
T ss_pred             CC-ccccCCH-----hHhccCCcccEEEccC
Confidence            31 1111110     1124578999999943

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.44  E-value=5.1e-13  Score=146.38  Aligned_cols=284  Identities=12%  Similarity=0.054  Sum_probs=144.6

Q ss_pred             CCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC----
Q 008452          123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ----  198 (565)
Q Consensus       123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~----  198 (565)
                      +.++.+.+...... ......+..++.  ..+++++|++...       ....+|..+..+++|++|.++++....    
T Consensus       192 ~~L~~L~L~~n~~~-~~~~~~l~~~~~--~~~~L~~L~L~~~-------~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~  261 (592)
T 3ogk_B          192 TSLEVLNFYMTEFA-KISPKDLETIAR--NCRSLVSVKVGDF-------EILELVGFFKAAANLEEFCGGSLNEDIGMPE  261 (592)
T ss_dssp             CCCCEEECTTCCCS-SCCHHHHHHHHH--HCTTCCEEECSSC-------BGGGGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred             CCccEEEeeccCCC-ccCHHHHHHHHh--hCCCCcEEeccCc-------cHHHHHHHHhhhhHHHhhcccccccccchHH
Confidence            56777766544310 011233433333  2367888877652       223355556666777777776532211    


Q ss_pred             -CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc----cccCcccceeEccccc--ccccchh
Q 008452          199 -PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC----ISGAHKLKILTMETLS--SELKGVK  271 (565)
Q Consensus       199 -~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~----i~~~~~L~~L~l~~c~--~~l~~i~  271 (565)
                       ......+++|+.|.++.+  ....+..++..|++|++|+|++|. ++...    +..+++|+.|++..+.  .++..+.
T Consensus       262 ~~~~l~~~~~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~  338 (592)
T 3ogk_B          262 KYMNLVFPRKLCRLGLSYM--GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA  338 (592)
T ss_dssp             SSSCCCCCTTCCEEEETTC--CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred             HHHHhhccccccccCcccc--chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence             234455666666666654  223344455666677777776665 22211    2346667776666433  1223333


Q ss_pred             hcCccccEeeecC----------CCCCCCC-ceeeccccccccccccc--ccchHHHHHHhcCCCCcceeeccc---ccc
Q 008452          272 IVASSLQQLTLQF----------PFEGQGT-PVVDIAVCPNLKKFRAF--NLLGQEFCTLISKFPLLEDLSLFA---CSS  335 (565)
Q Consensus       272 ~~~p~L~~L~l~~----------~~~~~~~-~~~~l~~~~~L~~L~~~--~i~~~~l~~l~~~~~~L~~L~L~~---C~~  335 (565)
                      ..+++|++|++++          +...+.. .......|++|+.|.+.  .+++..+..+..++++|+.|++.+   |..
T Consensus       339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~  418 (592)
T 3ogk_B          339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER  418 (592)
T ss_dssp             HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred             HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence            3566677777662          2210111 11113346666666553  456666666666677777777763   333


Q ss_pred             cccc---------cccCCcccEEeecCCcC-h-----hhccccCCCccceeEecCCCCc-------eecccccceeeecc
Q 008452          336 FERI---------TISSNQLKHLSLVHCAS-L-----KAINIDAPNLLSCNFWYNPFPI-------ISINSQCSWNIHFN  393 (565)
Q Consensus       336 ~~~l---------~~~~~~L~~L~L~~C~~-L-----~~L~i~~p~L~~~~~~g~~~~~-------~~~~sL~~~~l~~~  393 (565)
                      ++..         ...+++|+.|++++|.+ +     ..+.-..++|+.+.++++...-       ....+|+.+++..+
T Consensus       419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence            3332         22356777777766653 1     1221234566666665543310       01124555555431


Q ss_pred             cccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452          394 CQDDHDGGWFLNFKDFLRISKKIEELSIDFLS  425 (565)
Q Consensus       394 ~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~  425 (565)
                      .     -. -..+..+.+++++|++|+++.+.
T Consensus       499 ~-----l~-~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          499 C-----FS-ERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             C-----CB-HHHHHHHHHHCSSCCEEEEESCB
T ss_pred             C-----Cc-HHHHHHHHHhcCccCeeECcCCc
Confidence            1     01 12245566667777777777666

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.42  E-value=3.9e-13  Score=143.47  Aligned_cols=286  Identities=15%  Similarity=0.034  Sum_probs=192.5

Q ss_pred             ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc---
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL---  247 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---  247 (565)
                      ...+|..+.  ++|+.|+|++|.+..  +..+..+++|++|+|+++.++.- ....+.++++|++|+|++|.. +.+   
T Consensus        23 l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~   98 (477)
T 2id5_A           23 FVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRL-KLIPLG   98 (477)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCC-CSCCTT
T ss_pred             cCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcC-CccCcc
Confidence            345555443  589999999999887  56788999999999999987321 123467899999999999864 222   


Q ss_pred             ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccch-HHHHHHhcCCCC
Q 008452          248 CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLG-QEFCTLISKFPL  324 (565)
Q Consensus       248 ~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~-~~l~~l~~~~~~  324 (565)
                      .+..+++|+.|++++|. ..+..-.+ .+++|++|+++++.+ ....+..++.+++|+.|++.+..- ......+.++++
T Consensus        99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  177 (477)
T 2id5_A           99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG  177 (477)
T ss_dssp             SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred             cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence            24568999999999985 22222234 789999999999986 333344678899999888774322 222445788999


Q ss_pred             cceeeccccccccccc---ccCCcccEEeecCCcChhhccc---cCCCccceeEecCCCC------ceecccccceeeec
Q 008452          325 LEDLSLFACSSFERIT---ISSNQLKHLSLVHCASLKAINI---DAPNLLSCNFWYNPFP------IISINSQCSWNIHF  392 (565)
Q Consensus       325 L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~i---~~p~L~~~~~~g~~~~------~~~~~sL~~~~l~~  392 (565)
                      |+.|+|.++.......   ..+++|+.|++++|..+..+..   ...+|+.+.++++...      +....+|+.+++..
T Consensus       178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  257 (477)
T 2id5_A          178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY  257 (477)
T ss_dssp             CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred             CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence            9999999874322111   2457899999999886655432   3358899999888652      12235788888876


Q ss_pred             ccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHh
Q 008452          393 NCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFW  472 (565)
Q Consensus       393 ~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~  472 (565)
                      +.......       ..+.++++|++|.+..+.... ..|..|..     .++|+.|.+... .......     ..+..
T Consensus       258 n~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~-----l~~L~~L~L~~N-~l~~~~~-----~~~~~  318 (477)
T 2id5_A          258 NPISTIEG-------SMLHELLRLQEIQLVGGQLAV-VEPYAFRG-----LNYLRVLNVSGN-QLTTLEE-----SVFHS  318 (477)
T ss_dssp             SCCCEECT-------TSCTTCTTCCEEECCSSCCSE-ECTTTBTT-----CTTCCEEECCSS-CCSCCCG-----GGBSC
T ss_pred             CcCCccCh-------hhccccccCCEEECCCCccce-ECHHHhcC-----cccCCEEECCCC-cCceeCH-----hHcCC
Confidence            43222222       246788999999998877442 23555555     345788877531 1111111     11235


Q ss_pred             hhcCCeeeec
Q 008452          473 ICYPRTLSLS  482 (565)
Q Consensus       473 ~~~l~~l~l~  482 (565)
                      +++|+++.++
T Consensus       319 l~~L~~L~l~  328 (477)
T 2id5_A          319 VGNLETLILD  328 (477)
T ss_dssp             GGGCCEEECC
T ss_pred             CcccCEEEcc
Confidence            6899999984

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.41  E-value=1.2e-12  Score=142.13  Aligned_cols=172  Identities=14%  Similarity=0.087  Sum_probs=108.1

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH  231 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp  231 (565)
                      +++++|++...      ......|..+..+++|++|+|++|.+..  +..+..+++|++|+|+++.+.+. ....+..++
T Consensus        26 ~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~   98 (549)
T 2z81_A           26 AAMKSLDLSFN------KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLS   98 (549)
T ss_dssp             TTCCEEECCSS------CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCT
T ss_pred             CCccEEECcCC------ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCC
Confidence            46777777652      1122234556677888888888887776  45677888888888888877322 223457788


Q ss_pred             CCceeEeeecCCCc-c--cccccCcccceeEccccc--ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccc
Q 008452          232 FLEDLNFFECLGLK-L--LCISGAHKLKILTMETLS--SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKF  305 (565)
Q Consensus       232 ~Le~L~L~~c~~l~-~--l~i~~~~~L~~L~l~~c~--~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  305 (565)
                      +|++|++++|.... .  -.+..+++|+.|++++|.  ..+....+ .+++|++|+++++.+ ....+..++.+++|+.|
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEE
T ss_pred             CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc-cccChhhhhccccCceE
Confidence            88888888886432 1  124457888888888874  11222233 678888888888775 33344456667777766


Q ss_pred             cccccchHHHHH-HhcCCCCcceeecccc
Q 008452          306 RAFNLLGQEFCT-LISKFPLLEDLSLFAC  333 (565)
Q Consensus       306 ~~~~i~~~~l~~-l~~~~~~L~~L~L~~C  333 (565)
                      ++.......++. ++..+++|+.|++++|
T Consensus       178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  206 (549)
T 2z81_A          178 TLHLSESAFLLEIFADILSSVRYLELRDT  206 (549)
T ss_dssp             EEECSBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred             ecccCcccccchhhHhhcccccEEEccCC
Confidence            665333222332 2345667777777665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.41  E-value=1.5e-13  Score=145.96  Aligned_cols=101  Identities=17%  Similarity=0.076  Sum_probs=47.5

Q ss_pred             cccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452          180 VFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT  259 (565)
Q Consensus       180 l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~  259 (565)
                      +..+++|++|+|++|.+... .+..+++|++|+|+++.++.-  .  +..+++|++|++++|.. +.+.+..+++|+.|+
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~N~l-~~l~l~~l~~L~~L~  154 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCARNTL-TEIDVSHNTQLTELD  154 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECTTSCC-SCCCCTTCTTCCEEE
T ss_pred             cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECCCCcc-ceeccccCCcCCEEE
Confidence            34445555555555555442 144555555555555555221  1  34455555555555532 223344445555555


Q ss_pred             cccccccccchhh-cCccccEeeecCCCC
Q 008452          260 METLSSELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       260 l~~c~~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      +++|. .+..+.+ .+++|++|+++++.+
T Consensus       155 l~~n~-~~~~~~~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          155 CHLNK-KITKLDVTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             CTTCS-CCCCCCCTTCTTCCEEECCSSCC
T ss_pred             CCCCC-cccccccccCCcCCEEECCCCcc
Confidence            55543 2222223 445555555555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.41  E-value=4.2e-13  Score=147.59  Aligned_cols=275  Identities=17%  Similarity=0.112  Sum_probs=185.6

Q ss_pred             CccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccceeEc
Q 008452          185 FLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLKILTM  260 (565)
Q Consensus       185 ~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l  260 (565)
                      +|++|++++|.+..  +..+..+++|++|+|+++.++  .+...+..+++|++|++++|.....  ..+..+++|+.|++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence            79999999998887  445889999999999999884  2333467899999999999976432  24566899999999


Q ss_pred             cccc-c-cccchhh-cCccccEeeecCCCCCCCCc--eeecccccccccccccccch-HHHHHHhcCCCCcceeeccccc
Q 008452          261 ETLS-S-ELKGVKI-VASSLQQLTLQFPFEGQGTP--VVDIAVCPNLKKFRAFNLLG-QEFCTLISKFPLLEDLSLFACS  334 (565)
Q Consensus       261 ~~c~-~-~l~~i~~-~~p~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~  334 (565)
                      ++|. . .+..-.+ .+++|++|+++++.+ ....  +..++.+++|+.|++.+..- ...+..+.++++|+.|++++|.
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            9985 1 1112223 789999999999986 2211  33578899999998874322 2334567789999999999985


Q ss_pred             ccccc----cccCCcccEEeecCCcChhhcc----ccCCCccceeEecCCCC---------ceecccccceeeecccccC
Q 008452          335 SFERI----TISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPFP---------IISINSQCSWNIHFNCQDD  397 (565)
Q Consensus       335 ~~~~l----~~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~~---------~~~~~sL~~~~l~~~~~~~  397 (565)
                      ..+..    ....++|+.|++++|. +....    -..++|+.+.++++...         +....+|+.+++..+...+
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred             CCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence            43322    1245789999999885 22211    24578889988887641         2223578899887644332


Q ss_pred             CCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCC
Q 008452          398 HDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPR  477 (565)
Q Consensus       398 ~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~  477 (565)
                      ..+.       .+.++++|++|+++.+.... ..|..|..        ++.|++.+.+......    ....+...++|+
T Consensus       491 ~~~~-------~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~--------l~~L~L~L~~N~l~~~----~~~~~~~l~~L~  550 (606)
T 3t6q_A          491 IDQH-------AFTSLKMMNHVDLSHNRLTS-SSIEALSH--------LKGIYLNLASNHISII----LPSLLPILSQQR  550 (606)
T ss_dssp             ECTT-------TTTTCTTCCEEECCSSCCCG-GGGGGGTT--------CCSCEEECCSSCCCCC----CGGGHHHHHTSS
T ss_pred             cChh-------hhccccCCCEEECCCCccCc-CChhHhCc--------ccccEEECcCCccccc----CHhhcccCCCCC
Confidence            2222       56788999999999887432 34566666        4444333321111110    112234568999


Q ss_pred             eeeecc
Q 008452          478 TLSLST  483 (565)
Q Consensus       478 ~l~l~~  483 (565)
                      ++.++.
T Consensus       551 ~L~l~~  556 (606)
T 3t6q_A          551 TINLRQ  556 (606)
T ss_dssp             EEECTT
T ss_pred             EEeCCC
Confidence            999943

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.40  E-value=5.6e-13  Score=138.47  Aligned_cols=248  Identities=18%  Similarity=0.114  Sum_probs=122.1

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCccc-ccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTV-FSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      .+++.+++..       .....+|..+ ..+++|++|+|++|.+..  +..+..+++|++|+|+++.++.- ....+..+
T Consensus        45 ~~l~~l~l~~-------~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l  116 (390)
T 3o6n_A           45 NNQKIVTFKN-------STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNV  116 (390)
T ss_dssp             CCCSEEEEES-------CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTC
T ss_pred             CCceEEEecC-------CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCC
Confidence            4666666665       2234455543 346677777777776655  33566677777777777666221 11234566


Q ss_pred             cCCceeEeeecCCCcccc---cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccc
Q 008452          231 HFLEDLNFFECLGLKLLC---ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKF  305 (565)
Q Consensus       231 p~Le~L~L~~c~~l~~l~---i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  305 (565)
                      ++|++|++++|... .+.   +..+++|+.|++++|. ..+..-.+ .+++|++|+++++.+..    ..++.+++|+.|
T Consensus       117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~L~~L  191 (390)
T 3o6n_A          117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----VDLSLIPSLFHA  191 (390)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB----CCGGGCTTCSEE
T ss_pred             CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc----ccccccccccee
Confidence            77777777776432 221   2345677777777664 11111123 45677777777766511    234555666655


Q ss_pred             cccccchHHHHHHhcCCCCcceeecccccccccccccCCcccEEeecCCcChhhcc--ccCCCccceeEecCCCC-----
Q 008452          306 RAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAIN--IDAPNLLSCNFWYNPFP-----  378 (565)
Q Consensus       306 ~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~~~~L~~L~L~~C~~L~~L~--i~~p~L~~~~~~g~~~~-----  378 (565)
                      ++....-..    +...++|+.|++++|.....-.....+|+.|++.++. +....  -..++|+.+.++++...     
T Consensus       192 ~l~~n~l~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          192 NVSYNLLST----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             ECCSSCCSE----EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             ecccccccc----cCCCCcceEEECCCCeeeeccccccccccEEECCCCC-CcccHHHcCCCCccEEECCCCcCCCcChh
Confidence            554221110    1233466666666643211111122456666655552 11110  13345555555554431     


Q ss_pred             -ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEeccc
Q 008452          379 -IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQ  427 (565)
Q Consensus       379 -~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~  427 (565)
                       +....+|+.+++..+...+        +......+++|++|+++.+...
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~--------~~~~~~~l~~L~~L~L~~n~l~  308 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNRLVA--------LNLYGQPIPTLKVLDLSHNHLL  308 (390)
T ss_dssp             GGTTCSSCCEEECCSSCCCE--------EECSSSCCTTCCEEECCSSCCC
T ss_pred             HccccccCCEEECCCCcCcc--------cCcccCCCCCCCEEECCCCcce
Confidence             1112345555554322110        1112244566666666655543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.39  E-value=5.3e-13  Score=135.37  Aligned_cols=170  Identities=23%  Similarity=0.260  Sum_probs=126.5

Q ss_pred             CCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeE
Q 008452          183 ANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILT  259 (565)
Q Consensus       183 ~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~  259 (565)
                      ..+++.|+|+++.+.. +..+..+++|++|+|+++.+.  .+...+..+++|++|+|++|... .+  .+..+++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            3689999999999888 777888999999999999885  34445678999999999999653 33  345689999999


Q ss_pred             cccccccccchh--h----------cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcce
Q 008452          260 METLSSELKGVK--I----------VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLED  327 (565)
Q Consensus       260 l~~c~~~l~~i~--~----------~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~  327 (565)
                      +++|. ....+.  +          .+++|++|++++|.+.  ..+..++.+++|+.|++.+..-..++..+..+++|+.
T Consensus       157 L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~  233 (328)
T 4fcg_A          157 IRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred             CCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence            99986 222221  1          3889999999999863  4555688888888888775433344445778889999


Q ss_pred             eecccccccccccc---cCCcccEEeecCCcChh
Q 008452          328 LSLFACSSFERITI---SSNQLKHLSLVHCASLK  358 (565)
Q Consensus       328 L~L~~C~~~~~l~~---~~~~L~~L~L~~C~~L~  358 (565)
                      |+|++|...+.++.   ..++|+.|++++|..+.
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence            99998876666543   24567777777665443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.37  E-value=2.8e-12  Score=135.81  Aligned_cols=303  Identities=12%  Similarity=0.062  Sum_probs=181.7

Q ss_pred             CCCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--C
Q 008452          122 KFSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--P  199 (565)
Q Consensus       122 ~~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~  199 (565)
                      -..++.+.+.............      +...+++++|+|...      ......|..+..+++|++|+|++|.+..  +
T Consensus        53 l~~L~~L~L~~n~~~~~i~~~~------~~~l~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  120 (455)
T 3v47_A           53 LQDLQFLKVEQQTPGLVIRNNT------FRGLSSLIILKLDYN------QFLQLETGAFNGLANLEVLTLTQCNLDGAVL  120 (455)
T ss_dssp             CTTCCEEECCCCSTTCEECTTT------TTTCTTCCEEECTTC------TTCEECTTTTTTCTTCCEEECTTSCCBTHHH
T ss_pred             CccccEEECcCCcccceECccc------ccccccCCEEeCCCC------ccCccChhhccCcccCCEEeCCCCCCCcccc
Confidence            3678888887664110000111      112368999998762      1223346677889999999999999876  3


Q ss_pred             C--cccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--cccc--CcccceeEccccc-ccccch--
Q 008452          200 C--YAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISG--AHKLKILTMETLS-SELKGV--  270 (565)
Q Consensus       200 ~--~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~--~~~L~~L~l~~c~-~~l~~i--  270 (565)
                      .  .+..+++|++|+|+++.+.......++..+++|++|++++|......  .+..  .++|+.|+++++. ..+...  
T Consensus       121 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~  200 (455)
T 3v47_A          121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL  200 (455)
T ss_dssp             HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCT
T ss_pred             CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhc
Confidence            3  37889999999999999843322334788999999999999653211  1211  2789999999985 111111  


Q ss_pred             -------hhcCccccEeeecCCCCCCCCceeeccc---ccccccccccccch--H-----------HHHHHhcCCCCcce
Q 008452          271 -------KIVASSLQQLTLQFPFEGQGTPVVDIAV---CPNLKKFRAFNLLG--Q-----------EFCTLISKFPLLED  327 (565)
Q Consensus       271 -------~~~~p~L~~L~l~~~~~~~~~~~~~l~~---~~~L~~L~~~~i~~--~-----------~l~~l~~~~~~L~~  327 (565)
                             ....++|++|++++|.+ ....+..+..   .++|+.|++.+...  .           ...-.....++|+.
T Consensus       201 ~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  279 (455)
T 3v47_A          201 GWEKCGNPFKNTSITTLDLSGNGF-KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT  279 (455)
T ss_dssp             THHHHCCTTTTCEEEEEECTTSCC-CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred             cccccccccccceeeeEecCCCcc-cccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE
Confidence                   12458999999999986 2222222222   24555555432100  0           00000012367888


Q ss_pred             eeccccccccccc---ccCCcccEEeecCCcChhhcc----ccCCCccceeEecCCCC------ceecccccceeeeccc
Q 008452          328 LSLFACSSFERIT---ISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPFP------IISINSQCSWNIHFNC  394 (565)
Q Consensus       328 L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~~------~~~~~sL~~~~l~~~~  394 (565)
                      |++++|...+.++   ..+++|+.|+++++. +..+.    -..++|+.+.++++...      +....+|+.+++..|.
T Consensus       280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  358 (455)
T 3v47_A          280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH  358 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC
T ss_pred             EEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc
Confidence            8888874433222   234678888887764 22221    13467777777777541      1223578888887643


Q ss_pred             ccCCCCcccchHHHHHhhCCCCceEEEEEeccccccccc-ccccccCCCCCccceeEEE
Q 008452          395 QDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLY-KFSRCCNSLPIQVETLRLR  452 (565)
Q Consensus       395 ~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~-~~~~c~~~~p~~l~~L~l~  452 (565)
                      ..+..+       ..+.++++|++|+++.+...  .+|. .|..     .++|+.|.+.
T Consensus       359 l~~~~~-------~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~-----l~~L~~L~l~  403 (455)
T 3v47_A          359 IRALGD-------QSFLGLPNLKELALDTNQLK--SVPDGIFDR-----LTSLQKIWLH  403 (455)
T ss_dssp             CCEECT-------TTTTTCTTCCEEECCSSCCS--CCCTTTTTT-----CTTCCEEECC
T ss_pred             ccccCh-------hhccccccccEEECCCCccc--cCCHhHhcc-----CCcccEEEcc
Confidence            222222       25677899999999988755  2232 3444     3357777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.37  E-value=9.5e-13  Score=144.66  Aligned_cols=229  Identities=14%  Similarity=0.051  Sum_probs=105.7

Q ss_pred             ccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcc
Q 008452          179 TVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHK  254 (565)
Q Consensus       179 ~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~  254 (565)
                      .+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++. ....++..+++|+.|+|++|......  .+..+++
T Consensus        94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  172 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS  172 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred             HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence            44455566666666665555  2234556666666666665521 01122345566666666655432211  2334556


Q ss_pred             cceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccc
Q 008452          255 LKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       255 L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C  333 (565)
                      |+.|++++|  .+..+.+ .+++|+.|+++++.+.      .+...++|+.|++++..-..++  ....++|+.|+|++|
T Consensus       173 L~~L~L~~N--~l~~~~~~~l~~L~~L~l~~n~l~------~l~~~~~L~~L~ls~n~l~~~~--~~~~~~L~~L~L~~n  242 (597)
T 3oja_B          173 LQNLQLSSN--RLTHVDLSLIPSLFHANVSYNLLS------TLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHN  242 (597)
T ss_dssp             CCEEECTTS--CCSBCCGGGCTTCSEEECCSSCCS------EEECCTTCSEEECCSSCCCEEE--CSCCSCCCEEECCSS
T ss_pred             CcEEECcCC--CCCCcChhhhhhhhhhhcccCccc------cccCCchhheeeccCCcccccc--cccCCCCCEEECCCC
Confidence            666666655  3333333 4556666666555431      1233344555554422111111  012246666666665


Q ss_pred             cccccc-cccCCcccEEeecCCcChhhcc----ccCCCccceeEecCCCC-----ceecccccceeeecccccCCCCccc
Q 008452          334 SSFERI-TISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPFP-----IISINSQCSWNIHFNCQDDHDGGWF  403 (565)
Q Consensus       334 ~~~~~l-~~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~~-----~~~~~sL~~~~l~~~~~~~~~~~~l  403 (565)
                      ...+.- ...+++|+.|+++++. +..+.    ...++|+.+.++++...     +..+.+|+.+++..|...       
T Consensus       243 ~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-------  314 (597)
T 3oja_B          243 NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-------  314 (597)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-------
T ss_pred             CCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-------
Confidence            322111 1134566666666553 21110    12345555555555431     111235666666543211       


Q ss_pred             chHHHHHhhCCCCceEEEEEeccc
Q 008452          404 LNFKDFLRISKKIEELSIDFLSNQ  427 (565)
Q Consensus       404 ~~l~~~l~~l~~Le~L~i~~~~~~  427 (565)
                       .+...+..+++|++|.++.+...
T Consensus       315 -~i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          315 -HVERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             -CCGGGHHHHTTCSEEECCSSCCC
T ss_pred             -ccCcccccCCCCCEEECCCCCCC
Confidence             11112355666766666665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.36  E-value=1.2e-12  Score=144.05  Aligned_cols=170  Identities=13%  Similarity=0.060  Sum_probs=123.1

Q ss_pred             cccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452          180 VFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT  259 (565)
Q Consensus       180 l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~  259 (565)
                      +..+++|+.|+++++.+...+.+..+++|++|++++|.+  ..+..+  .++.|++|++.+|.......+..+++|+.|+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l--~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL--KQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC--SSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccC--cccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            556789999999999887744778889999999999988  223333  8999999999999777766677789999999


Q ss_pred             ccccc-cccc--chhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHH-H-HHhcCCCCcceeecccc
Q 008452          260 METLS-SELK--GVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEF-C-TLISKFPLLEDLSLFAC  333 (565)
Q Consensus       260 l~~c~-~~l~--~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l-~-~l~~~~~~L~~L~L~~C  333 (565)
                      +++|. .+..  ...+ .+++|++|++++|.+.  ..+..+..+++|+.|++.+..-... + ..+.++++|+.|++++|
T Consensus       357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE--EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             CcCCccCCCcchhhhhccCCcccEeECCCCccc--cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            99885 2221  2233 7899999999998752  2335677888888888764322221 2 45678899999999988


Q ss_pred             ccccccc---ccCCcccEEeecCCc
Q 008452          334 SSFERIT---ISSNQLKHLSLVHCA  355 (565)
Q Consensus       334 ~~~~~l~---~~~~~L~~L~L~~C~  355 (565)
                      ...+..+   ..+++|+.|++++|.
T Consensus       435 ~l~~~~~~~~~~l~~L~~L~l~~n~  459 (606)
T 3vq2_A          435 NTKIDFDGIFLGLTSLNTLKMAGNS  459 (606)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             CCCccchhhhcCCCCCCEEECCCCc
Confidence            5443332   234677888777763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.36  E-value=2.8e-13  Score=143.72  Aligned_cols=316  Identities=16%  Similarity=0.115  Sum_probs=185.6

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC------CCcccCCCcCcEEEcCCeeechHHHHHHH
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ------PCYAMCFLSLKKLHLYGVYITEQMVQKLL  227 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~------~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll  227 (565)
                      +.+++|++....     .....+...+..+++|++|+|++|.+..      +..+..+++|++|+|+++.+++..+..+.
T Consensus         3 ~~l~~L~Ls~~~-----l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~   77 (461)
T 1z7x_W            3 LDIQSLDIQCEE-----LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL   77 (461)
T ss_dssp             EEEEEEEEESCC-----CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             ccceehhhhhcc-----cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence            367888887521     1112222334567899999999998874      23456789999999999999777777777


Q ss_pred             hcCc----CCceeEeeecCCCc----cc--ccccCcccceeEccccc---ccccchhh----cCccccEeeecCCCCCCC
Q 008452          228 HECH----FLEDLNFFECLGLK----LL--CISGAHKLKILTMETLS---SELKGVKI----VASSLQQLTLQFPFEGQG  290 (565)
Q Consensus       228 ~~cp----~Le~L~L~~c~~l~----~l--~i~~~~~L~~L~l~~c~---~~l~~i~~----~~p~L~~L~l~~~~~~~~  290 (565)
                      ..++    +|++|++++|....    .+  .+..+++|++|++++|.   .+...+..    ..++|++|++++|.+...
T Consensus        78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  157 (461)
T 1z7x_W           78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  157 (461)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence            7777    79999999996532    11  24558999999999986   11222221    246799999999986222


Q ss_pred             C---ceeecccccccccccccc--cchHHHHHHh----cCCCCcceeecccccccc----ccc---ccCCcccEEeecCC
Q 008452          291 T---PVVDIAVCPNLKKFRAFN--LLGQEFCTLI----SKFPLLEDLSLFACSSFE----RIT---ISSNQLKHLSLVHC  354 (565)
Q Consensus       291 ~---~~~~l~~~~~L~~L~~~~--i~~~~l~~l~----~~~~~L~~L~L~~C~~~~----~l~---~~~~~L~~L~L~~C  354 (565)
                      .   ....+..+++|+.|++.+  +++.....+.    ...++|+.|++++|..-.    .+.   ..+++|+.|++++|
T Consensus       158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence            1   133456778999888774  4444333333    256799999999984322    122   24688999999988


Q ss_pred             cChhh-----cc----ccCCCccceeEecCCCCc------ee----cccccceeeecccccCCCCcccchHHHHHh-hCC
Q 008452          355 ASLKA-----IN----IDAPNLLSCNFWYNPFPI------IS----INSQCSWNIHFNCQDDHDGGWFLNFKDFLR-ISK  414 (565)
Q Consensus       355 ~~L~~-----L~----i~~p~L~~~~~~g~~~~~------~~----~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~-~l~  414 (565)
                      . +..     +.    -..++|+.+.++++....      ..    ..+|+.+++..+..  ...+ ...+...+. +.+
T Consensus       238 ~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i--~~~~-~~~l~~~l~~~~~  313 (461)
T 1z7x_W          238 K-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL--GDEG-ARLLCETLLEPGC  313 (461)
T ss_dssp             B-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC--HHHH-HHHHHHHHTSTTC
T ss_pred             c-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC--chHH-HHHHHHHhccCCc
Confidence            4 322     11    135678888887775421      11    13566666654221  1111 112222222 235


Q ss_pred             CCceEEEEEeccccc---ccccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHh-hhcCCeeeeccCC
Q 008452          415 KIEELSIDFLSNQSL---FNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFW-ICYPRTLSLSTVN  485 (565)
Q Consensus       415 ~Le~L~i~~~~~~~~---~~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~l~~l~l~~~~  485 (565)
                      +|++|.++.+.....   .++..+..     .+++++|.+...  .........+...+.. .++|+++.++.+.
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~-----~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQ-----NRFLLELQISNN--RLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHH-----CSSCCEEECCSS--BCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhh-----CCCccEEEccCC--ccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            777777776653311   12333333     234666665421  1111112222222221 4577777775433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.34  E-value=1.2e-12  Score=136.05  Aligned_cols=264  Identities=15%  Similarity=0.070  Sum_probs=154.5

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCc-ccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhc
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQ-TVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHE  229 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~  229 (565)
                      .+++++|++...       ....++. .+..+++|++|+|++|.+..  +..+..+++|++|+|+++.++. ....++..
T Consensus        68 l~~L~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~  139 (390)
T 3o6n_A           68 FRQVELLNLNDL-------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHN  139 (390)
T ss_dssp             CCCCSEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred             cccCcEEECCCC-------cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcC
Confidence            468888888652       2223333 56678899999999998877  3456789999999999988731 11223567


Q ss_pred             CcCCceeEeeecCCCcc--cccccCcccceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452          230 CHFLEDLNFFECLGLKL--LCISGAHKLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR  306 (565)
Q Consensus       230 cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  306 (565)
                      +++|++|++++|.....  -.+..+++|+.|++++|  .+..+.+ ..++|+.|+++++.+.      .+...++|+.|+
T Consensus       140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~L~~L~  211 (390)
T 3o6n_A          140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN--RLTHVDLSLIPSLFHANVSYNLLS------TLAIPIAVEELD  211 (390)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS--CCSBCCGGGCTTCSEEECCSSCCS------EEECCSSCSEEE
T ss_pred             CCCCcEEECCCCccCccChhhccCCCCCCEEECCCC--cCCccccccccccceeeccccccc------ccCCCCcceEEE
Confidence            89999999998865322  12455788999999888  4444444 5778888888777641      222334555555


Q ss_pred             ccccchHHHHHHhcCCCCcceeecccccccccc-cccCCcccEEeecCCcChhhcc----ccCCCccceeEecCCCC---
Q 008452          307 AFNLLGQEFCTLISKFPLLEDLSLFACSSFERI-TISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPFP---  378 (565)
Q Consensus       307 ~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l-~~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~~---  378 (565)
                      +.+..-..++  ....++|+.|++++|...+.- ....++|+.|+++++. ++.+.    ...++|+.+.++++...   
T Consensus       212 l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  288 (390)
T 3o6n_A          212 ASHNSINVVR--GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALN  288 (390)
T ss_dssp             CCSSCCCEEE--CCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEE
T ss_pred             CCCCeeeecc--ccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccC
Confidence            4422111111  122356666666665221111 1133566666666553 21110    12345556655555431   


Q ss_pred             --ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452          379 --IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR  452 (565)
Q Consensus       379 --~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~  452 (565)
                        +....+|+.+++..+...        .+...+..+++|++|.+..+.....  +  +..     .++++.|.+.
T Consensus       289 ~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~l~~L~~L~L~~N~i~~~--~--~~~-----~~~L~~L~l~  347 (390)
T 3o6n_A          289 LYGQPIPTLKVLDLSHNHLL--------HVERNQPQFDRLENLYLDHNSIVTL--K--LST-----HHTLKNLTLS  347 (390)
T ss_dssp             CSSSCCTTCCEEECCSSCCC--------CCGGGHHHHTTCSEEECCSSCCCCC--C--CCT-----TCCCSEEECC
T ss_pred             cccCCCCCCCEEECCCCcce--------ecCccccccCcCCEEECCCCcccee--C--chh-----hccCCEEEcC
Confidence              112346778887654321        1222356788999999988875522  2  222     3358888875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.33  E-value=1.4e-12  Score=143.48  Aligned_cols=83  Identities=14%  Similarity=0.084  Sum_probs=59.6

Q ss_pred             CCcEEEEEEeCCCCcCccccccc-CcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTL-PQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      +++++|+++..       ....+ |..+..+++|++|+|++|.+..  +..+..+++|++|+|++|.+....+...+.++
T Consensus        80 ~~L~~L~Ls~n-------~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l  152 (606)
T 3vq2_A           80 HHLSNLILTGN-------PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL  152 (606)
T ss_dssp             TTCCEEECTTC-------CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC
T ss_pred             hhcCEeECCCC-------cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhc
Confidence            57888887652       22233 6667778888888888888776  35677888888888888877432334456778


Q ss_pred             cCCceeEeeecCC
Q 008452          231 HFLEDLNFFECLG  243 (565)
Q Consensus       231 p~Le~L~L~~c~~  243 (565)
                      ++|++|++++|..
T Consensus       153 ~~L~~L~Ls~n~l  165 (606)
T 3vq2_A          153 TNLVHVDLSYNYI  165 (606)
T ss_dssp             TTCCEEECCSSCC
T ss_pred             CCCCEEEccCCcc
Confidence            8888888888754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.33  E-value=1.4e-12  Score=138.50  Aligned_cols=295  Identities=16%  Similarity=0.051  Sum_probs=186.4

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      .+++++|++...       ....+| .+..+++|++|+|++|.+...+ +..+++|++|+|+++.++.-  .  +..+++
T Consensus        41 l~~L~~L~Ls~n-------~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~  107 (457)
T 3bz5_A           41 LATLTSLDCHNS-------SITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL--D--VTPLTK  107 (457)
T ss_dssp             HTTCCEEECCSS-------CCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC--C--CTTCTT
T ss_pred             cCCCCEEEccCC-------CcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee--e--cCCCCc
Confidence            478999998763       222345 5778999999999999988743 78899999999999998432  2  678999


Q ss_pred             CceeEeeecCCCcccccccCcccceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccc
Q 008452          233 LEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL  311 (565)
Q Consensus       233 Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~  311 (565)
                      |++|++++|.. +.+.+..+++|+.|++++|  .+..+.+ .+++|++|++++|.. ...  ..++.+++|+.|++++..
T Consensus       108 L~~L~L~~N~l-~~l~~~~l~~L~~L~l~~N--~l~~l~l~~l~~L~~L~l~~n~~-~~~--~~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          108 LTYLNCDTNKL-TKLDVSQNPLLTYLNCARN--TLTEIDVSHNTQLTELDCHLNKK-ITK--LDVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             CCEEECCSSCC-SCCCCTTCTTCCEEECTTS--CCSCCCCTTCTTCCEEECTTCSC-CCC--CCCTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcC-CeecCCCCCcCCEEECCCC--ccceeccccCCcCCEEECCCCCc-ccc--cccccCCcCCEEECCCCc
Confidence            99999999954 4456777899999999998  4544556 789999999999953 122  257888999988887433


Q ss_pred             hHHHHHHhcCCCCcceeeccccccccccc-ccCCcccEEeecCCcChhhccc-cCCCccceeEecCCC---Cceeccccc
Q 008452          312 GQEFCTLISKFPLLEDLSLFACSSFERIT-ISSNQLKHLSLVHCASLKAINI-DAPNLLSCNFWYNPF---PIISINSQC  386 (565)
Q Consensus       312 ~~~l~~l~~~~~~L~~L~L~~C~~~~~l~-~~~~~L~~L~L~~C~~L~~L~i-~~p~L~~~~~~g~~~---~~~~~~sL~  386 (565)
                      -..++  +..+++|+.|++++|.- ..+. ..+++|+.|+++++. ++.+.+ ..++|+.+.++++..   +...+.+|+
T Consensus       182 l~~l~--l~~l~~L~~L~l~~N~l-~~~~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~  257 (457)
T 3bz5_A          182 ITELD--VSQNKLLNRLNCDTNNI-TKLDLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLT  257 (457)
T ss_dssp             CCCCC--CTTCTTCCEEECCSSCC-SCCCCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred             cceec--cccCCCCCEEECcCCcC-CeeccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence            22233  67889999999998742 2222 235788888887763 333332 335677777777654   222223444


Q ss_pred             ceeeecccccCCCC---cccchHHHHHhhCCCCceEEEEEec-cccccccccccc---ccCCCCCccceeEEEEEeecCC
Q 008452          387 SWNIHFNCQDDHDG---GWFLNFKDFLRISKKIEELSIDFLS-NQSLFNLYKFSR---CCNSLPIQVETLRLRMVLTDIS  459 (565)
Q Consensus       387 ~~~l~~~~~~~~~~---~~l~~l~~~l~~l~~Le~L~i~~~~-~~~~~~~~~~~~---c~~~~p~~l~~L~l~~~~~~~~  459 (565)
                      .+++..+....-+.   .....+  ...++++|+.|.++.+. .+  .+|.....   -....-++++.|.+...    .
T Consensus       258 ~L~l~~n~L~~L~l~~n~~~~~~--~~~~l~~L~~L~Ls~n~~l~--~l~~~~~~L~~L~l~~~~~L~~L~L~~N----~  329 (457)
T 3bz5_A          258 TLHCIQTDLLEIDLTHNTQLIYF--QAEGCRKIKELDVTHNTQLY--LLDCQAAGITELDLSQNPKLVYLYLNNT----E  329 (457)
T ss_dssp             EEECTTCCCSCCCCTTCTTCCEE--ECTTCTTCCCCCCTTCTTCC--EEECTTCCCSCCCCTTCTTCCEEECTTC----C
T ss_pred             EEeccCCCCCEEECCCCccCCcc--cccccccCCEEECCCCcccc--eeccCCCcceEechhhcccCCEEECCCC----c
Confidence            43332211000000   000001  13567889999988776 22  22221111   00111234666665321    1


Q ss_pred             cchHHHHHHHHHhhhcCCeeeecc
Q 008452          460 PSEYEILLDGVFWICYPRTLSLST  483 (565)
Q Consensus       460 ~~~~~~~~~~l~~~~~l~~l~l~~  483 (565)
                      ..++    . +..+++|+++.++.
T Consensus       330 l~~l----~-l~~l~~L~~L~l~~  348 (457)
T 3bz5_A          330 LTEL----D-VSHNTKLKSLSCVN  348 (457)
T ss_dssp             CSCC----C-CTTCTTCSEEECCS
T ss_pred             cccc----c-cccCCcCcEEECCC
Confidence            1111    1 45678999998843

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.32  E-value=6.9e-12  Score=143.40  Aligned_cols=259  Identities=15%  Similarity=0.115  Sum_probs=138.5

Q ss_pred             CCcEEEEEEeCCCCcCccccccc-CcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHH-HHHhc
Q 008452          154 NGVKELDFQILPDIKDYVHTYTL-PQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQ-KLLHE  229 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~-~ll~~  229 (565)
                      .+++.|+|...      .....+ |..+.++++|++|+|++|.+..  +..+.++++|++|+|++|.+.+.... ..+..
T Consensus        48 ~~L~~LdLs~n------~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           48 EQLQLLELGSQ------YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             CSCSEEEECTT------CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             ccCeEEeCCCC------CCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence            46666666552      112233 4455667777777777776665  55667777777777777766332111 12456


Q ss_pred             CcCCceeEeeecCCCcc---cccccCcccceeEccccc-ccccchhh-c--CccccEeeecCCCCCCCCceeecccccc-
Q 008452          230 CHFLEDLNFFECLGLKL---LCISGAHKLKILTMETLS-SELKGVKI-V--ASSLQQLTLQFPFEGQGTPVVDIAVCPN-  301 (565)
Q Consensus       230 cp~Le~L~L~~c~~l~~---l~i~~~~~L~~L~l~~c~-~~l~~i~~-~--~p~L~~L~l~~~~~~~~~~~~~l~~~~~-  301 (565)
                      +++|++|+|++|...+.   -.+..+++|+.|++++|. .....-.+ .  .++|+.|+++++.+ ....+..++.+++ 
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l-~~~~~~~~~~~~~~  200 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL-YSRVSVDWGKCMNP  200 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS-CCCCCCCCCSSSCT
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc-ccccccchhhcCCc
Confidence            77777777777754322   124456777777777764 11111111 1  26777777777765 3334444555544 


Q ss_pred             -----ccccccccc--chHH---HHH--------------------------------HhcC--CCCcceeecccccccc
Q 008452          302 -----LKKFRAFNL--LGQE---FCT--------------------------------LISK--FPLLEDLSLFACSSFE  337 (565)
Q Consensus       302 -----L~~L~~~~i--~~~~---l~~--------------------------------l~~~--~~~L~~L~L~~C~~~~  337 (565)
                           |+.|+++..  +...   +..                                .+.+  .++|+.|+|++|....
T Consensus       201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~  280 (844)
T 3j0a_A          201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS  280 (844)
T ss_dssp             TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred             cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence                 666665422  1111   000                                0111  2567777776653222


Q ss_pred             ccc---ccCCcccEEeecCCcChhhcc----ccCCCccceeEecCCC------CceecccccceeeecccccCCCCcccc
Q 008452          338 RIT---ISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPF------PIISINSQCSWNIHFNCQDDHDGGWFL  404 (565)
Q Consensus       338 ~l~---~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~------~~~~~~sL~~~~l~~~~~~~~~~~~l~  404 (565)
                      ...   ...++|+.|+++++. +..+.    -..++|+.+.++++..      .+....+|+.+++..|.......+   
T Consensus       281 ~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---  356 (844)
T 3j0a_A          281 LNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ---  356 (844)
T ss_dssp             ECSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS---
T ss_pred             cChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh---
Confidence            111   134567777766653 22111    1235677777776653      112224677777765432222222   


Q ss_pred             hHHHHHhhCCCCceEEEEEeccc
Q 008452          405 NFKDFLRISKKIEELSIDFLSNQ  427 (565)
Q Consensus       405 ~l~~~l~~l~~Le~L~i~~~~~~  427 (565)
                          .+.++++|++|+++.+...
T Consensus       357 ----~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          357 ----TFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             ----CSCSCCCCCEEEEETCCSC
T ss_pred             ----hhcCCCCCCEEECCCCCCC
Confidence                3566788888888877644

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.32  E-value=1.1e-11  Score=135.91  Aligned_cols=208  Identities=17%  Similarity=0.045  Sum_probs=110.2

Q ss_pred             CcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCc
Q 008452          155 GVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLE  234 (565)
Q Consensus       155 ~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le  234 (565)
                      +++.|++..       .....+|..+.  ++|++|+|++|.+...+.  .+++|++|+|++|.++.  +.   ..+++|+
T Consensus        41 ~l~~L~ls~-------n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--lp---~~l~~L~  104 (622)
T 3g06_A           41 GNAVLNVGE-------SGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLL  104 (622)
T ss_dssp             CCCEEECCS-------SCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--CC---CCCTTCC
T ss_pred             CCcEEEecC-------CCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--CC---CCCCCCC
Confidence            566666654       22335565554  677777777777765222  56777777777777621  11   1567777


Q ss_pred             eeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHH
Q 008452          235 DLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQE  314 (565)
Q Consensus       235 ~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~  314 (565)
                      +|+|++|... .+.. .+++|+.|++++|  .+..+....++|++|++++|.+..  .+   ...++|+.|.+.+..-..
T Consensus       105 ~L~Ls~N~l~-~l~~-~l~~L~~L~L~~N--~l~~lp~~l~~L~~L~Ls~N~l~~--l~---~~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          105 ELSIFSNPLT-HLPA-LPSGLCKLWIFGN--QLTSLPVLPPGLQELSVSDNQLAS--LP---ALPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             EEEECSCCCC-CCCC-CCTTCCEEECCSS--CCSCCCCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC
T ss_pred             EEECcCCcCC-CCCC-CCCCcCEEECCCC--CCCcCCCCCCCCCEEECcCCcCCC--cC---CccCCCCEEECCCCCCCC
Confidence            7777777432 2222 3467777777776  344444445777777777776522  11   123455555544322111


Q ss_pred             HHHHhcCCCCcceeecccccccccccccCCcccEEeecCCcChhhccccCCCccceeEecCCCCc--eecccccceeeec
Q 008452          315 FCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPI--ISINSQCSWNIHF  392 (565)
Q Consensus       315 l~~l~~~~~~L~~L~L~~C~~~~~l~~~~~~L~~L~L~~C~~L~~L~i~~p~L~~~~~~g~~~~~--~~~~sL~~~~l~~  392 (565)
                      ++   ..+++|+.|++++|. +..++....+|+.|.+.++ +++.+.-..++|+.+.++++....  ....+|+.+++..
T Consensus       176 l~---~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~  250 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG  250 (622)
T ss_dssp             CC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             Cc---ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCC-cccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCC
Confidence            21   445667777776653 3333333456666666655 233332223455555555543311  1123455555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.30  E-value=5.6e-12  Score=143.09  Aligned_cols=273  Identities=9%  Similarity=-0.004  Sum_probs=170.5

Q ss_pred             HhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCcc-CCC---CC-------cccCCCcCcEEEcCCeeech
Q 008452          152 IENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCK-LEQ---PC-------YAMCFLSLKKLHLYGVYITE  220 (565)
Q Consensus       152 ~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~-l~~---~~-------~~~~l~~Lk~L~L~~~~~~~  220 (565)
                      ..++++.|+|...      .....+|..+..+++|+.|+|++|. +..   |.       .+..+++|+.|+|++|.+. 
T Consensus       489 ~L~~L~~L~Ls~N------~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-  561 (876)
T 4ecn_A          489 NLKDLTDVELYNC------PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-  561 (876)
T ss_dssp             GCTTCCEEEEESC------TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred             cCCCCCEEECcCC------CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence            3468999999873      2345788889999999999999997 653   22       3345669999999999885 


Q ss_pred             HHHHH--HHhcCcCCceeEeeecCCCccc-ccccCcccceeEcccccccccchh--h-cCcc-ccEeeecCCCCCCCCce
Q 008452          221 QMVQK--LLHECHFLEDLNFFECLGLKLL-CISGAHKLKILTMETLSSELKGVK--I-VASS-LQQLTLQFPFEGQGTPV  293 (565)
Q Consensus       221 ~~l~~--ll~~cp~Le~L~L~~c~~l~~l-~i~~~~~L~~L~l~~c~~~l~~i~--~-~~p~-L~~L~l~~~~~~~~~~~  293 (565)
                       .+..  .+..+++|+.|+|++|... .+ .+..+++|+.|++++|.  +..+.  + .+++ |+.|++++|.+.  ..+
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~--l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp  635 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ--IEEIPEDFCAFTDQVEGLGFSHNKLK--YIP  635 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSC--CSCCCTTSCEECTTCCEEECCSSCCC--SCC
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCc--cccchHHHhhccccCCEEECcCCCCC--cCc
Confidence             3444  6788999999999998754 33 44557899999999885  33332  3 6677 999999998863  344


Q ss_pred             eeccccc--ccccccccccchH-HHHHH---hc--CCCCcceeecccccccccccc----cCCcccEEeecCCcChhhcc
Q 008452          294 VDIAVCP--NLKKFRAFNLLGQ-EFCTL---IS--KFPLLEDLSLFACSSFERITI----SSNQLKHLSLVHCASLKAIN  361 (565)
Q Consensus       294 ~~l~~~~--~L~~L~~~~i~~~-~l~~l---~~--~~~~L~~L~L~~C~~~~~l~~----~~~~L~~L~L~~C~~L~~L~  361 (565)
                      ..+...+  +|+.|++++..-. .++.+   +.  ..++|+.|+|++|... .++.    .+++|+.|+|+++ ++..+.
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N-~L~~ip  713 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN-LMTSIP  713 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC-CCSCCC
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC-cCCccC
Confidence            4444443  3777776633211 11111   11  2347888888776322 3331    3467777777766 333222


Q ss_pred             cc---C--------CCccceeEecCCC---Cce----ecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEE
Q 008452          362 ID---A--------PNLLSCNFWYNPF---PII----SINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDF  423 (565)
Q Consensus       362 i~---~--------p~L~~~~~~g~~~---~~~----~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~  423 (565)
                      ..   .        ++|+.+.++++..   +..    .+.+|+.+++..|...+ .+.       .+.++++|+.|.++.
T Consensus       714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~-------~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPT-------QPLNSSQLKAFGIRH  785 (876)
T ss_dssp             TTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCC-------GGGGCTTCCEEECCC
T ss_pred             hHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cch-------hhhcCCCCCEEECCC
Confidence            11   1        1566666666654   211    23467777776644332 222       456788888888875


Q ss_pred             ec-----ccccccccccccccCCCCCccceeEEE
Q 008452          424 LS-----NQSLFNLYKFSRCCNSLPIQVETLRLR  452 (565)
Q Consensus       424 ~~-----~~~~~~~~~~~~c~~~~p~~l~~L~l~  452 (565)
                      +.     .....+|..|..     .++|+.|.|.
T Consensus       786 N~~ls~N~l~~~ip~~l~~-----L~~L~~L~Ls  814 (876)
T 4ecn_A          786 QRDAEGNRILRQWPTGITT-----CPSLIQLQIG  814 (876)
T ss_dssp             CBCTTCCBCCCCCCTTGGG-----CSSCCEEECC
T ss_pred             CCCcccccccccChHHHhc-----CCCCCEEECC
Confidence            32     111145555555     3357777764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.30  E-value=4.2e-12  Score=145.19  Aligned_cols=278  Identities=16%  Similarity=0.052  Sum_probs=165.1

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC---CCcccCCCcCcEEEcCCeeechHHHHHHHhc
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ---PCYAMCFLSLKKLHLYGVYITEQMVQKLLHE  229 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~---~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~  229 (565)
                      .+++++|+|+..      ......|..+..+++|++|+|++|....   +..+.++++|++|+|++|.+... ....+.+
T Consensus        23 p~~l~~LdLs~N------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~   95 (844)
T 3j0a_A           23 LNTTERLLLSFN------YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQG   95 (844)
T ss_dssp             CTTCCEEEEESC------CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCS
T ss_pred             CCCcCEEECCCC------cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccC
Confidence            368999999872      1223345667788999999999985443   55678899999999999987321 1234678


Q ss_pred             CcCCceeEeeecCCCccc----ccccCcccceeEccccc-ccccc-hhh-cCccccEeeecCCCCCCCCceeecccc--c
Q 008452          230 CHFLEDLNFFECLGLKLL----CISGAHKLKILTMETLS-SELKG-VKI-VASSLQQLTLQFPFEGQGTPVVDIAVC--P  300 (565)
Q Consensus       230 cp~Le~L~L~~c~~l~~l----~i~~~~~L~~L~l~~c~-~~l~~-i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~--~  300 (565)
                      +++|++|+|++|.....+    .+..+++|+.|++++|. .++.. -.+ .+++|++|+++++.+ ....+..++.+  +
T Consensus        96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i-~~~~~~~l~~l~~~  174 (844)
T 3j0a_A           96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI-FLVCEHELEPLQGK  174 (844)
T ss_dssp             CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC-CCCCSGGGHHHHHC
T ss_pred             CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC-CeeCHHHcccccCC
Confidence            999999999998654321    25568999999999985 22211 123 789999999999886 34344455555  6


Q ss_pred             ccccccccccch-HHHHHHhcCCC------Ccceeeccccccccccc------cc-------------------------
Q 008452          301 NLKKFRAFNLLG-QEFCTLISKFP------LLEDLSLFACSSFERIT------IS-------------------------  342 (565)
Q Consensus       301 ~L~~L~~~~i~~-~~l~~l~~~~~------~L~~L~L~~C~~~~~l~------~~-------------------------  342 (565)
                      +|+.|++....- ...+..+..++      .|+.|++++|.....+.      +.                         
T Consensus       175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~  254 (844)
T 3j0a_A          175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD  254 (844)
T ss_dssp             SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred             ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence            777777653211 11111122333      38999998872211110      01                         


Q ss_pred             ----------CCcccEEeecCCcChhhcc----ccCCCccceeEecCCCC------ceecccccceeeecccccCCCCcc
Q 008452          343 ----------SNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNPFP------IISINSQCSWNIHFNCQDDHDGGW  402 (565)
Q Consensus       343 ----------~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~~~------~~~~~sL~~~~l~~~~~~~~~~~~  402 (565)
                                ..+|+.|+++++. +..+.    -..++|+.+.+.++...      +....+|+.+++..|...+..+. 
T Consensus       255 ~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-  332 (844)
T 3j0a_A          255 PDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS-  332 (844)
T ss_dssp             GGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC-
T ss_pred             CChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH-
Confidence                      1345555555442 11111    12356666666666541      22234677777765443322232 


Q ss_pred             cchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452          403 FLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR  452 (565)
Q Consensus       403 l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~  452 (565)
                            .+.++++|++|+++.+.... ..+..|..     .++|+.|.+.
T Consensus       333 ------~~~~l~~L~~L~L~~N~i~~-~~~~~~~~-----l~~L~~L~Ls  370 (844)
T 3j0a_A          333 ------NFYGLPKVAYIDLQKNHIAI-IQDQTFKF-----LEKLQTLDLR  370 (844)
T ss_dssp             ------SCSSCTTCCEEECCSCCCCC-CCSSCSCS-----CCCCCEEEEE
T ss_pred             ------HhcCCCCCCEEECCCCCCCc-cChhhhcC-----CCCCCEEECC
Confidence                  34566777777777666431 12233444     3457777775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.30  E-value=7.4e-12  Score=138.56  Aligned_cols=295  Identities=9%  Similarity=-0.047  Sum_probs=189.3

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCcc-CCC---CCcccCC------CcCcEEEcCCeeechHH
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCK-LEQ---PCYAMCF------LSLKKLHLYGVYITEQM  222 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~-l~~---~~~~~~l------~~Lk~L~L~~~~~~~~~  222 (565)
                      .+++++|++...      .....+|..+.++++|++|+|++|. +..   |..+..+      ++|++|+|+++.++  .
T Consensus       248 l~~L~~L~L~~n------~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~  319 (636)
T 4eco_A          248 LKDLTDVEVYNC------PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--T  319 (636)
T ss_dssp             CTTCCEEEEECC------TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--S
T ss_pred             cCCCCEEEecCC------cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--c
Confidence            468999999873      2345788889999999999999997 753   3444444      99999999999985  3


Q ss_pred             HHH--HHhcCcCCceeEeeecCCCccc-ccccCcccceeEcccccccccch--hh-cCcc-ccEeeecCCCCCCCCceee
Q 008452          223 VQK--LLHECHFLEDLNFFECLGLKLL-CISGAHKLKILTMETLSSELKGV--KI-VASS-LQQLTLQFPFEGQGTPVVD  295 (565)
Q Consensus       223 l~~--ll~~cp~Le~L~L~~c~~l~~l-~i~~~~~L~~L~l~~c~~~l~~i--~~-~~p~-L~~L~l~~~~~~~~~~~~~  295 (565)
                      +..  .+..+++|++|++++|...+.+ .+..+++|+.|++++|.  +..+  .+ .+++ |++|++++|.+.  ..+..
T Consensus       320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~--l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~  395 (636)
T 4eco_A          320 FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ--ITEIPANFCGFTEQVENLSFAHNKLK--YIPNI  395 (636)
T ss_dssp             CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE--EEECCTTSEEECTTCCEEECCSSCCS--SCCSC
T ss_pred             cCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc--cccccHhhhhhcccCcEEEccCCcCc--ccchh
Confidence            444  6788999999999999764333 34457899999999984  3333  23 6777 999999999873  34444


Q ss_pred             ccccc--ccccccccccch-HHHHHHhc-------CCCCcceeecccccccccccc----cCCcccEEeecCCcChhhcc
Q 008452          296 IAVCP--NLKKFRAFNLLG-QEFCTLIS-------KFPLLEDLSLFACSSFERITI----SSNQLKHLSLVHCASLKAIN  361 (565)
Q Consensus       296 l~~~~--~L~~L~~~~i~~-~~l~~l~~-------~~~~L~~L~L~~C~~~~~l~~----~~~~L~~L~L~~C~~L~~L~  361 (565)
                      +..++  +|+.|++++..- ...+..+.       .+++|+.|+|++|... .++.    ..++|+.|+++++. ++.+.
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~-l~~i~  473 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM-LTEIP  473 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC-CSBCC
T ss_pred             hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC-CCCcC
Confidence            55443  788877764321 22222233       5668888888886432 3332    35788888888763 33332


Q ss_pred             ccC-----------CCccceeEecCCC---Cce----ecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEE
Q 008452          362 IDA-----------PNLLSCNFWYNPF---PII----SINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDF  423 (565)
Q Consensus       362 i~~-----------p~L~~~~~~g~~~---~~~----~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~  423 (565)
                      ...           ++|+.+.++++..   +..    ...+|+.++++.|...+ .+.       .+.++++|++|.++.
T Consensus       474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~-------~~~~l~~L~~L~Ls~  545 (636)
T 4eco_A          474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT-------QPLNSSTLKGFGIRN  545 (636)
T ss_dssp             SSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCC-------GGGGCSSCCEEECCS
T ss_pred             HHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cCh-------hhhcCCCCCEEECCC
Confidence            111           1677777777654   222    23478888887654333 233       466788999999864


Q ss_pred             ec-----ccccccccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCCeeeecc
Q 008452          424 LS-----NQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLST  483 (565)
Q Consensus       424 ~~-----~~~~~~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~  483 (565)
                      +.     .....+|..|..     .++|+.|.+... ........        ..++|+++.++.
T Consensus       546 N~~ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N-~l~~ip~~--------~~~~L~~L~Ls~  596 (636)
T 4eco_A          546 QRDAQGNRTLREWPEGITL-----CPSLTQLQIGSN-DIRKVNEK--------ITPNISVLDIKD  596 (636)
T ss_dssp             CBCTTCCBCCCCCCTTGGG-----CSSCCEEECCSS-CCCBCCSC--------CCTTCCEEECCS
T ss_pred             CcccccCcccccChHHHhc-----CCCCCEEECCCC-cCCccCHh--------HhCcCCEEECcC
Confidence            32     111145666655     335777776432 01111110        127889998844

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.29  E-value=1.4e-12  Score=133.64  Aligned_cols=153  Identities=16%  Similarity=0.087  Sum_probs=72.7

Q ss_pred             ccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc---cccccCc
Q 008452          179 TVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL---LCISGAH  253 (565)
Q Consensus       179 ~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~---l~i~~~~  253 (565)
                      .+..+++|++|+|++|.+..  +..+..+++|++|+|+++.++. .....+..+++|++|++++|.....   -.+..++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~  149 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT  149 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence            34455666666666665554  2345566666666666665521 1112345566666666666543211   1123356


Q ss_pred             ccceeEccccc--ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHH-HhcCCCCcceee
Q 008452          254 KLKILTMETLS--SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCT-LISKFPLLEDLS  329 (565)
Q Consensus       254 ~L~~L~l~~c~--~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~-l~~~~~~L~~L~  329 (565)
                      +|+.|++++|.  ..+..-.+ .+++|++|+++++.+ ....+..++.+++|+.|++.+.....++. .+..+++|+.|+
T Consensus       150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  228 (353)
T 2z80_A          150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE  228 (353)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred             CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc-CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEE
Confidence            66666666653  11111122 455666666666554 22223334445555555444222122221 233345555555


Q ss_pred             cccc
Q 008452          330 LFAC  333 (565)
Q Consensus       330 L~~C  333 (565)
                      +++|
T Consensus       229 L~~n  232 (353)
T 2z80_A          229 LRDT  232 (353)
T ss_dssp             EESC
T ss_pred             CCCC
Confidence            5543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.29  E-value=4.7e-12  Score=139.07  Aligned_cols=245  Identities=14%  Similarity=0.086  Sum_probs=155.4

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCc-ccccCCCccEEEecCccCCC-CCc-ccCCCcCcEEEcCCeeechHHHHHHHhc
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQ-TVFSANFLTHLRLAGCKLEQ-PCY-AMCFLSLKKLHLYGVYITEQMVQKLLHE  229 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~-~~~-~~~l~~Lk~L~L~~~~~~~~~l~~ll~~  229 (565)
                      .++++.|+|...       ....+|+ .+..+++|++|+|++|.+.. ++. +..+++|++|+|++|.+..- ....+..
T Consensus        98 l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~  169 (597)
T 3oja_B           98 AHTIQKLYMGFN-------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQA  169 (597)
T ss_dssp             CTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTT
T ss_pred             CCCCCEEECCCC-------cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-Chhhhhc
Confidence            358888888762       2334444 45678999999999999888 443 58999999999999988321 1234678


Q ss_pred             CcCCceeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccc
Q 008452          230 CHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFN  309 (565)
Q Consensus       230 cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~  309 (565)
                      +++|+.|+|++|.. +.+.+..+++|+.|+++++.  +..+. ..++|++|+++++.+..    ......++|+.|++.+
T Consensus       170 l~~L~~L~L~~N~l-~~~~~~~l~~L~~L~l~~n~--l~~l~-~~~~L~~L~ls~n~l~~----~~~~~~~~L~~L~L~~  241 (597)
T 3oja_B          170 TTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNL--LSTLA-IPIAVEELDASHNSINV----VRGPVNVELTILKLQH  241 (597)
T ss_dssp             CTTCCEEECTTSCC-SBCCGGGCTTCSEEECCSSC--CSEEE-CCTTCSEEECCSSCCCE----EECSCCSCCCEEECCS
T ss_pred             CCcCcEEECcCCCC-CCcChhhhhhhhhhhcccCc--ccccc-CCchhheeeccCCcccc----cccccCCCCCEEECCC
Confidence            99999999999864 44556667899999998874  33222 34578888888877511    1112235677666653


Q ss_pred             cchHHHHHHhcCCCCcceeeccccccccccc---ccCCcccEEeecCCcChhhccc---cCCCccceeEecCCCC-----
Q 008452          310 LLGQEFCTLISKFPLLEDLSLFACSSFERIT---ISSNQLKHLSLVHCASLKAINI---DAPNLLSCNFWYNPFP-----  378 (565)
Q Consensus       310 i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~i---~~p~L~~~~~~g~~~~-----  378 (565)
                      ..-.. ...+..+++|+.|+|++|...+..+   ..+++|+.|+|+++ ++..+..   ..|+|+.+.++++...     
T Consensus       242 n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~  319 (597)
T 3oja_B          242 NNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERN  319 (597)
T ss_dssp             SCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGG
T ss_pred             CCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCCccCcc
Confidence            21111 1446677788888887764332222   23467777777765 2333321   2456777777776541     


Q ss_pred             ceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452          379 IISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS  425 (565)
Q Consensus       379 ~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~  425 (565)
                      +..+.+|+.+++..|.....          .+..++.|++|+++.++
T Consensus       320 ~~~l~~L~~L~L~~N~l~~~----------~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          320 QPQFDRLENLYLDHNSIVTL----------KLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             HHHHTTCSEEECCSSCCCCC----------CCCTTCCCSEEECCSSC
T ss_pred             cccCCCCCEEECCCCCCCCc----------ChhhcCCCCEEEeeCCC
Confidence            11224777777765332111          14566788888887766

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.28  E-value=6.9e-12  Score=136.66  Aligned_cols=99  Identities=16%  Similarity=0.129  Sum_probs=47.5

Q ss_pred             hcCCCCcceeeccccccccccc---ccCCcccEEeecCCcChhhcc-ccCCCccceeEecCCC----Cceecccccceee
Q 008452          319 ISKFPLLEDLSLFACSSFERIT---ISSNQLKHLSLVHCASLKAIN-IDAPNLLSCNFWYNPF----PIISINSQCSWNI  390 (565)
Q Consensus       319 ~~~~~~L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~-i~~p~L~~~~~~g~~~----~~~~~~sL~~~~l  390 (565)
                      +..+++|+.|++.+|.. ..++   ... +|+.|++.+|. +..+. ...++|+.+.+.++..    +.....+|+.+++
T Consensus       278 ~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l  354 (570)
T 2z63_A          278 FNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL  354 (570)
T ss_dssp             TGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred             hcCcCcccEEEecCccc-hhhhhhhccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence            44566777777766532 1222   122 66666666653 22221 1235566666665543    1122245666666


Q ss_pred             ecccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452          391 HFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS  425 (565)
Q Consensus       391 ~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~  425 (565)
                      ..+...    + .......+.++++|++|+++.+.
T Consensus       355 ~~n~l~----~-~~~~~~~~~~~~~L~~L~l~~n~  384 (570)
T 2z63_A          355 SRNGLS----F-KGCCSQSDFGTTSLKYLDLSFNG  384 (570)
T ss_dssp             CSSCCB----E-EEEEEHHHHTCSCCCEEECCSCS
T ss_pred             cCCccC----c-cccccccccccCccCEEECCCCc
Confidence            442211    0 11112345566666666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.27  E-value=3.2e-11  Score=130.02  Aligned_cols=101  Identities=17%  Similarity=-0.004  Sum_probs=61.7

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      +++++|+++..      ......|..+..+++|++|+|++|.+.. +..  .+++|++|+|++|.++.-.+...+..+++
T Consensus        45 ~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~  116 (520)
T 2z7x_B           45 SKLRILIISHN------RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ  116 (520)
T ss_dssp             TTCCEEECCSS------CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred             ccccEEecCCC------ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCc
Confidence            56777777652      1112224556667777777777777766 333  67777777777777633222234566777


Q ss_pred             CceeEeeecCCCcccccccCccc--ceeEcccc
Q 008452          233 LEDLNFFECLGLKLLCISGAHKL--KILTMETL  263 (565)
Q Consensus       233 Le~L~L~~c~~l~~l~i~~~~~L--~~L~l~~c  263 (565)
                      |++|++++|.... ..+..+++|  +.|++++|
T Consensus       117 L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B          117 LKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             CCEEEEEESSCCG-GGGGGGTTSCEEEEEEEEC
T ss_pred             ceEEEecCcccch-hhccccccceeeEEEeecc
Confidence            7777777775422 334445666  77777766

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.26  E-value=6e-12  Score=126.69  Aligned_cols=156  Identities=16%  Similarity=0.088  Sum_probs=72.5

Q ss_pred             ccCcccccCCCccEEEecC-ccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--cc
Q 008452          175 TLPQTVFSANFLTHLRLAG-CKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CI  249 (565)
Q Consensus       175 ~lp~~l~~~~~L~~L~L~~-c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i  249 (565)
                      .+|..+..+++|++|+|++ +.+..  +..+..+++|++|+|+++.++.. +...+..+++|++|++++|...+.+  .+
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  145 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence            4555555556666666653 44443  44455566666666665555211 1122445556666666555432111  23


Q ss_pred             ccCcccceeEccccc-ccccchhh-cCc-cccEeeecCCCCCCCCceeecccccccccccccccc-hHHHHHHhcCCCCc
Q 008452          250 SGAHKLKILTMETLS-SELKGVKI-VAS-SLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL-GQEFCTLISKFPLL  325 (565)
Q Consensus       250 ~~~~~L~~L~l~~c~-~~l~~i~~-~~p-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~-~~~l~~l~~~~~~L  325 (565)
                      ..+++|+.|++++|. .+...-.+ .++ +|++|++++|.+ ....+..++.++ |+.|++.+.. ....+..+..+++|
T Consensus       146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l-~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L  223 (313)
T 1ogq_A          146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL-TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE-EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred             hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee-eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence            335556666665553 11111112 333 556666655554 222233334443 5555444211 11223344555666


Q ss_pred             ceeecccc
Q 008452          326 EDLSLFAC  333 (565)
Q Consensus       326 ~~L~L~~C  333 (565)
                      +.|+|++|
T Consensus       224 ~~L~L~~N  231 (313)
T 1ogq_A          224 QKIHLAKN  231 (313)
T ss_dssp             SEEECCSS
T ss_pred             CEEECCCC
Confidence            66666654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.26  E-value=2.9e-11  Score=130.31  Aligned_cols=140  Identities=16%  Similarity=0.075  Sum_probs=78.4

Q ss_pred             ccccccccccccccch-HHHHHHhcCCCCcceeecccccccc--ccc---ccCCcccEEeecCCcChhh-cc----ccCC
Q 008452          297 AVCPNLKKFRAFNLLG-QEFCTLISKFPLLEDLSLFACSSFE--RIT---ISSNQLKHLSLVHCASLKA-IN----IDAP  365 (565)
Q Consensus       297 ~~~~~L~~L~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~~~~--~l~---~~~~~L~~L~L~~C~~L~~-L~----i~~p  365 (565)
                      +.+++|+.|++++..- +..+..+.++++|+.|++++|...+  .++   ...++|+.|+++++. +.. +.    ...+
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCc
Confidence            4566667666653221 2233445667777777777663221  221   234677777777664 221 22    1235


Q ss_pred             CccceeEecCCCCc---eec-ccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccc-cccccC
Q 008452          366 NLLSCNFWYNPFPI---ISI-NSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYK-FSRCCN  440 (565)
Q Consensus       366 ~L~~~~~~g~~~~~---~~~-~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~-~~~c~~  440 (565)
                      +|+.+.++++...-   ..+ .+|+.+++..+... .       +...+.++++|++|+++.+...  .+|.. |..   
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~-------ip~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~---  466 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-S-------IPKQVVKLEALQELNVASNQLK--SVPDGIFDR---  466 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-C-------CCGGGGGCTTCCEEECCSSCCC--CCCTTTTTT---
T ss_pred             cCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-c-------cchhhhcCCCCCEEECCCCcCC--ccCHHHhcc---
Confidence            66777776665411   111 46777887654322 1       2223458899999999988765  45554 544   


Q ss_pred             CCCCccceeEEE
Q 008452          441 SLPIQVETLRLR  452 (565)
Q Consensus       441 ~~p~~l~~L~l~  452 (565)
                        .++++.|.+.
T Consensus       467 --l~~L~~L~l~  476 (520)
T 2z7x_B          467 --LTSLQKIWLH  476 (520)
T ss_dssp             --CTTCCEEECC
T ss_pred             --CCcccEEECc
Confidence              3457777765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.25  E-value=1e-11  Score=131.09  Aligned_cols=148  Identities=16%  Similarity=0.014  Sum_probs=71.2

Q ss_pred             CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccceeE
Q 008452          184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLKILT  259 (565)
Q Consensus       184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~  259 (565)
                      ++++.|+|++|.+..  +..+.++++|++|+|+++.+..-. ...+.++++|++|+|++|.....  -.+..+++|+.|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            456666666666554  345556666666666666552110 12244566666666666533111  1233456666666


Q ss_pred             ccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccc
Q 008452          260 METLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       260 l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C  333 (565)
                      ++++. ..+....+ .+++|++|+++++..........+..+++|+.|++.+..-..++ .+..+++|+.|+|++|
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGN  217 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTS
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCC
Confidence            66653 11221122 45666666666543211111223445555555554422111111 1345556666666655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.25  E-value=2.5e-11  Score=135.32  Aligned_cols=195  Identities=11%  Similarity=-0.062  Sum_probs=95.7

Q ss_pred             ccccEeeecCCCCCCCCceeeccccccccccccccc--chHHHHHHhcCCCCcceeecccccccccc---cccCCcccEE
Q 008452          275 SSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL--LGQEFCTLISKFPLLEDLSLFACSSFERI---TISSNQLKHL  349 (565)
Q Consensus       275 p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i--~~~~l~~l~~~~~~L~~L~L~~C~~~~~l---~~~~~~L~~L  349 (565)
                      ++|+.|++++|.+ ....+..++.+++|+.|++++.  +.......+.++++|+.|++++|......   ...+++|+.|
T Consensus       381 ~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L  459 (680)
T 1ziw_A          381 SPLHILNLTKNKI-SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL  459 (680)
T ss_dssp             SCCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred             CcCceEECCCCCC-CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence            4555565555554 2222334556677776666532  11111234566777777777776422111   1134667777


Q ss_pred             eecCCc--Chhhcc---ccCCCccceeEecCCCC------ceecccccceeeecccccCCCCcccc-hHHHHHhhCCCCc
Q 008452          350 SLVHCA--SLKAIN---IDAPNLLSCNFWYNPFP------IISINSQCSWNIHFNCQDDHDGGWFL-NFKDFLRISKKIE  417 (565)
Q Consensus       350 ~L~~C~--~L~~L~---i~~p~L~~~~~~g~~~~------~~~~~sL~~~~l~~~~~~~~~~~~l~-~l~~~l~~l~~Le  417 (565)
                      .+.++.  ++..+.   -..++|+.+.++++...      +....+|+.+++..|...+...+.+. ....++.++++|+
T Consensus       460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~  539 (680)
T 1ziw_A          460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH  539 (680)
T ss_dssp             ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred             hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence            766653  111110   13356777777666541      22234677777765432211000000 0011367788888


Q ss_pred             eEEEEEeccccccccc-ccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCCeeeecc
Q 008452          418 ELSIDFLSNQSLFNLY-KFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLST  483 (565)
Q Consensus       418 ~L~i~~~~~~~~~~~~-~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~  483 (565)
                      +|+++.+...  .+|. .|..     .++|+.|.+... .......     ..+..+++|+++.++.
T Consensus       540 ~L~L~~N~l~--~i~~~~~~~-----l~~L~~L~Ls~N-~l~~l~~-----~~~~~l~~L~~L~L~~  593 (680)
T 1ziw_A          540 ILNLESNGFD--EIPVEVFKD-----LFELKIIDLGLN-NLNTLPA-----SVFNNQVSLKSLNLQK  593 (680)
T ss_dssp             EEECCSSCCC--CCCTTTTTT-----CTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECTT
T ss_pred             EEECCCCCCC--CCCHHHccc-----ccCcceeECCCC-CCCcCCH-----hHhCCCCCCCEEECCC
Confidence            8888877655  3343 3554     234777766421 0111000     0113457888888844

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.24  E-value=2.2e-11  Score=132.61  Aligned_cols=174  Identities=13%  Similarity=0.056  Sum_probs=118.0

Q ss_pred             ccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCc
Q 008452          175 TLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAH  253 (565)
Q Consensus       175 ~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~  253 (565)
                      ..|..+..+++|++|++++|.+.. +..+..+ +|++|+++++.+.  .+..  ..+++|++|++.+|..........++
T Consensus       273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (570)
T 2z63_A          273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLP  347 (570)
T ss_dssp             CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred             hchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc--ccCc--ccccccCEEeCcCCccccccccccCC
Confidence            345556667899999999988777 5666667 8999999988874  1111  46889999999988765554445678


Q ss_pred             ccceeEccccc-cccc--chhh-cCccccEeeecCCCCCCCCceeecccccccccccccccc--hHHHHHHhcCCCCcce
Q 008452          254 KLKILTMETLS-SELK--GVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL--GQEFCTLISKFPLLED  327 (565)
Q Consensus       254 ~L~~L~l~~c~-~~l~--~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~--~~~l~~l~~~~~~L~~  327 (565)
                      +|+.|++++|. ....  ...+ .+++|++|++++|.+  ...+..+..+++|+.|++.+..  .......+.++++|+.
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  425 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  425 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE--EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred             CCCEEeCcCCccCccccccccccccCccCEEECCCCcc--ccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence            99999998885 2221  1223 788999999998875  2233347788888888776422  2111234677888999


Q ss_pred             eeccccccccccc---ccCCcccEEeecCCc
Q 008452          328 LSLFACSSFERIT---ISSNQLKHLSLVHCA  355 (565)
Q Consensus       328 L~L~~C~~~~~l~---~~~~~L~~L~L~~C~  355 (565)
                      |++++|...+..+   ..+++|+.|++.+|.
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  456 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  456 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCCc
Confidence            9998875433222   234677777777664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.24  E-value=2.7e-11  Score=122.63  Aligned_cols=151  Identities=16%  Similarity=0.069  Sum_probs=65.7

Q ss_pred             CcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCc----cccccc
Q 008452          177 PQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLK----LLCISG  251 (565)
Q Consensus       177 p~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~----~l~i~~  251 (565)
                      |..+..+++|++|+|++|.+.. +...  +++|++|+++++.+..- ....+..+++|+.|++.+|....    .-.+..
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  169 (330)
T 1xku_A           93 PGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG  169 (330)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCCccChhh--cccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence            3344445555555555554443 1111  24555555555554211 11234455555555555554311    112233


Q ss_pred             CcccceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchH-HHHHHhcCCCCcceee
Q 008452          252 AHKLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQ-EFCTLISKFPLLEDLS  329 (565)
Q Consensus       252 ~~~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~-~l~~l~~~~~~L~~L~  329 (565)
                      +++|+.|++++|.  +..+.. ..++|++|+++++.+ ....+..++.+++|+.|++++..-. .....+..+++|+.|+
T Consensus       170 l~~L~~L~l~~n~--l~~l~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  246 (330)
T 1xku_A          170 MKKLSYIRIADTN--ITTIPQGLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  246 (330)
T ss_dssp             CTTCCEEECCSSC--CCSCCSSCCTTCSEEECTTSCC-CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             CCCcCEEECCCCc--cccCCccccccCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence            4555555555552  222221 124555555555554 2222233445555555554422111 1111234455555555


Q ss_pred             cccc
Q 008452          330 LFAC  333 (565)
Q Consensus       330 L~~C  333 (565)
                      |++|
T Consensus       247 L~~N  250 (330)
T 1xku_A          247 LNNN  250 (330)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.24  E-value=1.8e-11  Score=129.76  Aligned_cols=190  Identities=14%  Similarity=0.023  Sum_probs=109.8

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH  231 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp  231 (565)
                      ++++.|+|...      ......|..+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++.- ....+..++
T Consensus        75 ~~l~~L~L~~n------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~  147 (452)
T 3zyi_A           75 SNTRYLNLMEN------NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLS  147 (452)
T ss_dssp             TTCSEEECCSS------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCT
T ss_pred             CCccEEECcCC------cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccC
Confidence            46777776652      1112224445567778888887777766  45566777888888877776311 112345677


Q ss_pred             CCceeEeeecCCCc--ccccccCcccceeEcccccccccch---hh-cCccccEeeecCCCCCCCCceeecccccccccc
Q 008452          232 FLEDLNFFECLGLK--LLCISGAHKLKILTMETLSSELKGV---KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKF  305 (565)
Q Consensus       232 ~Le~L~L~~c~~l~--~l~i~~~~~L~~L~l~~c~~~l~~i---~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  305 (565)
                      +|++|+|++|....  .-.+..+++|+.|++++|. .+..+   .+ .+++|++|++++|.+...   ..+..+++|+.|
T Consensus       148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L  223 (452)
T 3zyi_A          148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEEL  223 (452)
T ss_dssp             TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSC---CCCTTCTTCCEE
T ss_pred             CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCccccc---ccccccccccEE
Confidence            78888887775421  1123446777888877765 33333   23 567788888877775221   246667777777


Q ss_pred             cccccch-HHHHHHhcCCCCcceeeccccccccccc---ccCCcccEEeecCC
Q 008452          306 RAFNLLG-QEFCTLISKFPLLEDLSLFACSSFERIT---ISSNQLKHLSLVHC  354 (565)
Q Consensus       306 ~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C  354 (565)
                      ++++..- ...+..+.++++|+.|+|++|.......   ...++|+.|+|+++
T Consensus       224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence            6653322 1223456677777777777753221111   12355666665554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.24  E-value=2.1e-11  Score=123.51  Aligned_cols=123  Identities=14%  Similarity=-0.023  Sum_probs=65.8

Q ss_pred             CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcc
Q 008452          184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTME  261 (565)
Q Consensus       184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~  261 (565)
                      ++|+.|+|++|.+..  +..+..+++|++|+|+++.++.- ....+..+++|++|++++|.. +.+.....++|+.|+++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQL-KELPEKMPKTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCC-SBCCSSCCTTCCEEECC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCcC-CccChhhcccccEEECC
Confidence            466777777776665  23456677777777777666211 012245667777777776643 22222223567777776


Q ss_pred             ccc-ccccchhh-cCccccEeeecCCCCCCC-Cceeeccccccccccccc
Q 008452          262 TLS-SELKGVKI-VASSLQQLTLQFPFEGQG-TPVVDIAVCPNLKKFRAF  308 (565)
Q Consensus       262 ~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~~~  308 (565)
                      +|. ..+..-.+ .+++|++|+++++.+... .....++.+++|+.|++.
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence            663 11111122 566677777766654111 122334555555555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.23  E-value=6e-12  Score=126.69  Aligned_cols=219  Identities=12%  Similarity=0.007  Sum_probs=149.1

Q ss_pred             CCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CC
Q 008452          123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PC  200 (565)
Q Consensus       123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~  200 (565)
                      ..++.+.+.......   ...+...  ....+++++|++... +    .....+|..+..+++|++|+|++|.+..  +.
T Consensus        50 ~~l~~L~L~~~~l~~---~~~~~~~--l~~l~~L~~L~L~~~-n----~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  119 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPK---PYPIPSS--LANLPYLNFLYIGGI-N----NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD  119 (313)
T ss_dssp             CCEEEEEEECCCCSS---CEECCGG--GGGCTTCSEEEEEEE-T----TEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred             ceEEEEECCCCCccC---CcccChh--HhCCCCCCeeeCCCC-C----cccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence            567787777664210   0011111  123468999999831 1    2344678888899999999999999875  66


Q ss_pred             cccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCc-ccceeEccccc-ccccchhh-cCc
Q 008452          201 YAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAH-KLKILTMETLS-SELKGVKI-VAS  275 (565)
Q Consensus       201 ~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~-~L~~L~l~~c~-~~l~~i~~-~~p  275 (565)
                      .+..+++|++|+|+++.+... +...+..+++|++|++++|.....+  .+..++ +|+.|++++|. .+...-.+ .++
T Consensus       120 ~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~  198 (313)
T 1ogq_A          120 FLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             HHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence            788999999999999988421 2334678999999999999764332  344455 99999999986 21222233 333


Q ss_pred             cccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccccc---cCCcccEEeec
Q 008452          276 SLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITI---SSNQLKHLSLV  352 (565)
Q Consensus       276 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~---~~~~L~~L~L~  352 (565)
                       |++|++++|.+ ....+..++.+++|+.|++.+..-......+..+++|+.|+|++|...+.++.   ..++|+.|+++
T Consensus       199 -L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  276 (313)
T 1ogq_A          199 -LAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             -CSEEECCSSEE-EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             -ccEEECcCCcc-cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence             99999999986 44455677889999988887432221122267789999999999854433332   34677777777


Q ss_pred             CC
Q 008452          353 HC  354 (565)
Q Consensus       353 ~C  354 (565)
                      ++
T Consensus       277 ~N  278 (313)
T 1ogq_A          277 FN  278 (313)
T ss_dssp             SS
T ss_pred             CC
Confidence            66

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.23  E-value=2.1e-11  Score=122.00  Aligned_cols=218  Identities=15%  Similarity=0.082  Sum_probs=138.8

Q ss_pred             ccccCcccccCCCccEEEecCccCCC-CC-cccCCCcCcEEEcCCeeechH-HHHHHHhcCcCCceeEeeecCCCcc-cc
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ-PC-YAMCFLSLKKLHLYGVYITEQ-MVQKLLHECHFLEDLNFFECLGLKL-LC  248 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~-~~-~~~~l~~Lk~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~l~~-l~  248 (565)
                      ...+|..+.  ++|++|+|++|.+.. +. .+..+++|++|+|+++.++.. .....+..+++|++|+|++|..... -.
T Consensus        19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~   96 (306)
T 2z66_A           19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN   96 (306)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred             cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence            345555443  589999999998877 33 367899999999999887321 1112244689999999998864221 12


Q ss_pred             cccCcccceeEccccc-ccccc-hhh-cCccccEeeecCCCCCCCCceeeccccccccccccccc--chHHHHHHhcCCC
Q 008452          249 ISGAHKLKILTMETLS-SELKG-VKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL--LGQEFCTLISKFP  323 (565)
Q Consensus       249 i~~~~~L~~L~l~~c~-~~l~~-i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i--~~~~l~~l~~~~~  323 (565)
                      +..+++|+.|+++++. ..+.. -.+ .+++|++|+++++.+ ....+..++.+++|+.|++.+.  ++..++..+..++
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  175 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  175 (306)
T ss_dssp             EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence            4457899999999885 22222 123 678999999998876 3333445677888888887643  3334556677888


Q ss_pred             Ccceeeccccccccccc---ccCCcccEEeecCCcChhhcc---c-cCCCccceeEecCCCC------ceec-cccccee
Q 008452          324 LLEDLSLFACSSFERIT---ISSNQLKHLSLVHCASLKAIN---I-DAPNLLSCNFWYNPFP------IISI-NSQCSWN  389 (565)
Q Consensus       324 ~L~~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~---i-~~p~L~~~~~~g~~~~------~~~~-~sL~~~~  389 (565)
                      +|+.|+|++|...+..+   ...++|+.|+++++. ++.+.   + ..++|+.+.++++...      +... .+|+.++
T Consensus       176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~  254 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  254 (306)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred             CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence            99999999874322211   234678888888764 22221   1 2356777777766541      1112 3566777


Q ss_pred             eeccc
Q 008452          390 IHFNC  394 (565)
Q Consensus       390 l~~~~  394 (565)
                      +..|.
T Consensus       255 L~~N~  259 (306)
T 2z66_A          255 LTQND  259 (306)
T ss_dssp             CTTCC
T ss_pred             ccCCC
Confidence            75543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.22  E-value=4.6e-11  Score=129.56  Aligned_cols=250  Identities=16%  Similarity=0.095  Sum_probs=164.4

Q ss_pred             CCCccEEEecCccCCC-----CCcccCCCcCcEEEcCCeeechHHHHHH---HhcCcCCceeEeeecCCCc---------
Q 008452          183 ANFLTHLRLAGCKLEQ-----PCYAMCFLSLKKLHLYGVYITEQMVQKL---LHECHFLEDLNFFECLGLK---------  245 (565)
Q Consensus       183 ~~~L~~L~L~~c~l~~-----~~~~~~l~~Lk~L~L~~~~~~~~~l~~l---l~~cp~Le~L~L~~c~~l~---------  245 (565)
                      +++|++|++++|.+..     .+....+++|+.|+++++.+++.....+   +..++.|+.|++.+|...+         
T Consensus       195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  274 (549)
T 2z81_A          195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES  274 (549)
T ss_dssp             TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTT
T ss_pred             cccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccch
Confidence            6788888888887765     1233467889999999998865554443   4568888888888875311         


Q ss_pred             ----------cccc------------------ccCcccceeEcccccccccchh----hcCccccEeeecCCCCCCCCc-
Q 008452          246 ----------LLCI------------------SGAHKLKILTMETLSSELKGVK----IVASSLQQLTLQFPFEGQGTP-  292 (565)
Q Consensus       246 ----------~l~i------------------~~~~~L~~L~l~~c~~~l~~i~----~~~p~L~~L~l~~~~~~~~~~-  292 (565)
                                .+.+                  ...++|+.|++++|.  +..+.    ..+++|++|++++|.+ .... 
T Consensus       275 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~--l~~ip~~~~~~l~~L~~L~Ls~N~l-~~~~~  351 (549)
T 2z81_A          275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK--VFLVPCSFSQHLKSLEFLDLSENLM-VEEYL  351 (549)
T ss_dssp             TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC--CCCCCHHHHHHCTTCCEEECCSSCC-CHHHH
T ss_pred             hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc--cccCCHHHHhcCccccEEEccCCcc-ccccc
Confidence                      0100                  012568888888774  33332    2689999999999986 2222 


Q ss_pred             --eeecccccccccccccccchHH---HHHHhcCCCCcceeecccccccccccc---cCCcccEEeecCCcChhhccccC
Q 008452          293 --VVDIAVCPNLKKFRAFNLLGQE---FCTLISKFPLLEDLSLFACSSFERITI---SSNQLKHLSLVHCASLKAINIDA  364 (565)
Q Consensus       293 --~~~l~~~~~L~~L~~~~i~~~~---l~~l~~~~~~L~~L~L~~C~~~~~l~~---~~~~L~~L~L~~C~~L~~L~i~~  364 (565)
                        ...++.+++|+.|++++..-..   ....+..+++|+.|+|++|. ++.++.   ..++|+.|+++++. ++.+.-..
T Consensus       352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~  429 (549)
T 2z81_A          352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCI  429 (549)
T ss_dssp             HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC-CSCCCTTS
T ss_pred             cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC-cccccchh
Confidence              2236788999999887433222   23568899999999999983 334443   34789999999885 44432222


Q ss_pred             -CCccceeEecCCCCc--eecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCC
Q 008452          365 -PNLLSCNFWYNPFPI--ISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNS  441 (565)
Q Consensus       365 -p~L~~~~~~g~~~~~--~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~  441 (565)
                       ++|+.+.++++....  ....+|+.+++..|... ..+.        ...+++|++|+++.+.... ..|..|..    
T Consensus       430 ~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~--------~~~l~~L~~L~Ls~N~l~~-~~~~~~~~----  495 (549)
T 2z81_A          430 PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD--------ASLFPVLLVMKISRNQLKS-VPDGIFDR----  495 (549)
T ss_dssp             CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC--------GGGCTTCCEEECCSSCCCC-CCTTGGGG----
T ss_pred             cCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC--------cccCccCCEEecCCCccCC-cCHHHHhc----
Confidence             478888888876522  23458899999765432 2222        2468899999999887442 33445666    


Q ss_pred             CCCccceeEEE
Q 008452          442 LPIQVETLRLR  452 (565)
Q Consensus       442 ~p~~l~~L~l~  452 (565)
                       .++++.|.+.
T Consensus       496 -l~~L~~L~l~  505 (549)
T 2z81_A          496 -LTSLQKIWLH  505 (549)
T ss_dssp             -CTTCCEEECC
T ss_pred             -CcccCEEEec
Confidence             3457877775

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.22  E-value=2e-11  Score=128.93  Aligned_cols=188  Identities=13%  Similarity=0.045  Sum_probs=127.8

Q ss_pred             CCcEEEEEEeCCCCcCccccccc-CcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTL-PQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      .+++.|+|...       ....+ +..+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++.- ....+..+
T Consensus        64 ~~l~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l  135 (440)
T 3zyj_A           64 TNTRLLNLHEN-------QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYL  135 (440)
T ss_dssp             TTCSEEECCSC-------CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSC
T ss_pred             CCCcEEEccCC-------cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhcc
Confidence            57788887662       22223 3456678899999999998876  45678899999999999887321 11245678


Q ss_pred             cCCceeEeeecCCCc--ccccccCcccceeEcccccccccch---hh-cCccccEeeecCCCCCCCCceeeccccccccc
Q 008452          231 HFLEDLNFFECLGLK--LLCISGAHKLKILTMETLSSELKGV---KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKK  304 (565)
Q Consensus       231 p~Le~L~L~~c~~l~--~l~i~~~~~L~~L~l~~c~~~l~~i---~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  304 (565)
                      ++|++|+|++|....  ...+..+++|+.|++++|. .+..+   .+ .+++|++|++++|.+...   ..+..+++|+.
T Consensus       136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~  211 (440)
T 3zyj_A          136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREI---PNLTPLIKLDE  211 (440)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSC---CCCTTCSSCCE
T ss_pred             ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccc---cccCCCcccCE
Confidence            999999999886522  1234557899999999875 33333   23 688999999999886322   24778888888


Q ss_pred             ccccccch-HHHHHHhcCCCCcceeeccccccccccc----ccCCcccEEeecCC
Q 008452          305 FRAFNLLG-QEFCTLISKFPLLEDLSLFACSSFERIT----ISSNQLKHLSLVHC  354 (565)
Q Consensus       305 L~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~~~~~l~----~~~~~L~~L~L~~C  354 (565)
                      |++++..- ...+..+.++++|+.|+|.++.. ..+.    ..+++|+.|+|+++
T Consensus       212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTSSTTCTTCCEEECTTS
T ss_pred             EECCCCccCccChhhhccCccCCEEECCCCce-eEEChhhhcCCCCCCEEECCCC
Confidence            88774322 22245677889999999998632 2221    13356666666665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.22  E-value=1.2e-11  Score=131.04  Aligned_cols=199  Identities=16%  Similarity=0.033  Sum_probs=127.7

Q ss_pred             ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cc
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LC  248 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~  248 (565)
                      ...+|..+.  ++|++|+|++|.+..  +..+..+++|++|+|+++.++.- ....+.++++|++|+|++|.....  -.
T Consensus        66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~  142 (452)
T 3zyi_A           66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGA  142 (452)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred             cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhh
Confidence            345565443  689999999998887  56788999999999999988321 113467899999999999864221  12


Q ss_pred             cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcc
Q 008452          249 ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLE  326 (565)
Q Consensus       249 i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~  326 (565)
                      +..+++|+.|++++|. ..+..-.+ .+++|++|+++++..........+..+++|+.|++++..-..++ .+..+++|+
T Consensus       143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~  221 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLE  221 (452)
T ss_dssp             SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCC
T ss_pred             hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-ccccccccc
Confidence            4457999999999985 22222234 78999999999865322222234677888888877643222222 256778888


Q ss_pred             eeeccccccccccc---ccCCcccEEeecCCcChhhcc----ccCCCccceeEecCC
Q 008452          327 DLSLFACSSFERIT---ISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNP  376 (565)
Q Consensus       327 ~L~L~~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~  376 (565)
                      .|+|++|...+..+   ...++|+.|.++++. +..+.    -..++|+.+.++++.
T Consensus       222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             EEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCc
Confidence            88888864322211   234567777776653 22221    123455555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.21  E-value=4e-11  Score=133.65  Aligned_cols=156  Identities=19%  Similarity=0.090  Sum_probs=93.8

Q ss_pred             cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--ccc
Q 008452          174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCI  249 (565)
Q Consensus       174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i  249 (565)
                      ..+|..+.  ++|++|+|++|.+..  +..+..+++|++|+|+++.++.. ....+..+++|++|+|++|.....  -.+
T Consensus        17 ~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~   93 (680)
T 1ziw_A           17 TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTF   93 (680)
T ss_dssp             SSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhh
Confidence            34554432  577888888877766  33467778888888887776221 123355678888888877754221  124


Q ss_pred             ccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccccccc--chHHHHHH-hcCCCC
Q 008452          250 SGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL--LGQEFCTL-ISKFPL  324 (565)
Q Consensus       250 ~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i--~~~~l~~l-~~~~~~  324 (565)
                      ..+++|++|++++|. ..+..-.+ .+++|++|++++|.+ ....+..++.+++|+.|++.+.  +......+ ...+++
T Consensus        94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  172 (680)
T 1ziw_A           94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS  172 (680)
T ss_dssp             TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred             ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence            557788888888774 22221123 577888888887775 3334445667777777776532  22111111 224577


Q ss_pred             cceeecccc
Q 008452          325 LEDLSLFAC  333 (565)
Q Consensus       325 L~~L~L~~C  333 (565)
                      |+.|++++|
T Consensus       173 L~~L~L~~n  181 (680)
T 1ziw_A          173 LKKLELSSN  181 (680)
T ss_dssp             ESEEECTTC
T ss_pred             ccEEECCCC
Confidence            888888776

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.21  E-value=4.1e-11  Score=120.29  Aligned_cols=184  Identities=14%  Similarity=0.141  Sum_probs=122.1

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL  233 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L  233 (565)
                      +++++|++...       ....+| .+..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+-  . -+..+++|
T Consensus        41 ~~L~~L~l~~~-------~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L  109 (308)
T 1h6u_A           41 DGITTLSAFGT-------GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSI  109 (308)
T ss_dssp             HTCCEEECTTS-------CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTC
T ss_pred             CCcCEEEeeCC-------CccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCC
Confidence            58888887652       222344 4667889999999999888733388899999999999988332  1 36778999


Q ss_pred             ceeEeeecCCCcccccccCcccceeEcccccccccchh-h-cCccccEeeecCCCCCCCCceeecccccccccccccccc
Q 008452          234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVK-I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL  311 (565)
Q Consensus       234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~-~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~  311 (565)
                      ++|++++|.....-.+..+++|+.|++++|.  +..+. + .+++|++|++++|.+.. ...  ++.+++|+.|++.+..
T Consensus       110 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ--ITNISPLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             CEEECTTSCCCCCGGGTTCTTCCEEECCSSC--CCCCGGGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSC
T ss_pred             CEEECCCCCCCCchhhcCCCCCCEEECCCCc--cCcCccccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCc
Confidence            9999998875333335667899999999885  22222 3 77889999999988632 211  7778888877776332


Q ss_pred             hHHHHHHhcCCCCcceeeccccccccccc-ccCCcccEEeecCC
Q 008452          312 GQEFCTLISKFPLLEDLSLFACSSFERIT-ISSNQLKHLSLVHC  354 (565)
Q Consensus       312 ~~~l~~l~~~~~~L~~L~L~~C~~~~~l~-~~~~~L~~L~L~~C  354 (565)
                      -..+.. +..+++|+.|+|++|.-.+... ..+++|+.|+++++
T Consensus       185 l~~~~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          185 ISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             CCCCGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred             cCcChh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence            222222 6678888888888763221111 12345555554443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.21  E-value=5.7e-11  Score=119.21  Aligned_cols=185  Identities=17%  Similarity=0.140  Sum_probs=133.6

Q ss_pred             cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcc
Q 008452          182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTME  261 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~  261 (565)
                      .+++|++|++++|.+...+.+..+++|++|+|+++.+.+-  .. +..+++|++|++++|..-..-.+..+++|+.|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCC--hh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence            4579999999999988755788899999999999998332  12 78899999999999975332245568999999999


Q ss_pred             cccccccch-hh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccc
Q 008452          262 TLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERI  339 (565)
Q Consensus       262 ~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l  339 (565)
                      +|.  +..+ .+ .+++|++|++++|.+....   .++.+++|+.|++++..-..+.. +..+++|+.|++++|.. ..+
T Consensus       116 ~n~--l~~~~~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~  188 (308)
T 1h6u_A          116 STQ--ITDVTPLAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI-SDI  188 (308)
T ss_dssp             TSC--CCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCC
T ss_pred             CCC--CCCchhhcCCCCCCEEECCCCccCcCc---cccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc-CcC
Confidence            995  3323 24 7899999999999873222   27888999988887433222333 78899999999998742 222


Q ss_pred             c--ccCCcccEEeecCCc--ChhhccccCCCccceeEecCCC
Q 008452          340 T--ISSNQLKHLSLVHCA--SLKAINIDAPNLLSCNFWYNPF  377 (565)
Q Consensus       340 ~--~~~~~L~~L~L~~C~--~L~~L~i~~p~L~~~~~~g~~~  377 (565)
                      .  ...++|+.|+++++.  .+..+ ...++|+.+.++++..
T Consensus       189 ~~l~~l~~L~~L~L~~N~l~~~~~l-~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          189 SPLASLPNLIEVHLKNNQISDVSPL-ANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             GGGGGCTTCCEEECTTSCCCBCGGG-TTCTTCCEEEEEEEEE
T ss_pred             hhhcCCCCCCEEEccCCccCccccc-cCCCCCCEEEccCCee
Confidence            1  245788888888774  22221 2346777777766643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.21  E-value=8.6e-11  Score=128.89  Aligned_cols=233  Identities=14%  Similarity=0.020  Sum_probs=147.7

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL  233 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L  233 (565)
                      +++++|++...       ....+|.   .+++|++|+|++|.+...+.  .+++|++|+|++|.++.  +.   ...++|
T Consensus        61 ~~L~~L~L~~N-------~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l~---~~l~~L  123 (622)
T 3g06_A           61 AHITTLVIPDN-------NLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--LP---ALPSGL  123 (622)
T ss_dssp             TTCSEEEECSC-------CCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--CC---CCCTTC
T ss_pred             CCCcEEEecCC-------CCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--CC---CCCCCc
Confidence            58889988762       2335565   45789999999998876222  78899999999988732  11   157889


Q ss_pred             ceeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchH
Q 008452          234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQ  313 (565)
Q Consensus       234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~  313 (565)
                      +.|++.+|.. +.+... +++|+.|++++|  .+..+.-..++|+.|++++|.+..  .+   ..+++|+.|++++..-.
T Consensus       124 ~~L~L~~N~l-~~lp~~-l~~L~~L~Ls~N--~l~~l~~~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          124 CKLWIFGNQL-TSLPVL-PPGLQELSVSDN--QLASLPALPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQLA  194 (622)
T ss_dssp             CEEECCSSCC-SCCCCC-CTTCCEEECCSS--CCSCCCCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCS
T ss_pred             CEEECCCCCC-CcCCCC-CCCCCEEECcCC--cCCCcCCccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCCCC
Confidence            9999988853 333322 488888888888  444443455778888888887622  22   44577777776643221


Q ss_pred             HHHHHhcCCCCcceeecccccccccccccCCcccEEeecCCcChhhccccCCCccceeEecCCCCc-e-ecccccceeee
Q 008452          314 EFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPI-I-SINSQCSWNIH  391 (565)
Q Consensus       314 ~l~~l~~~~~~L~~L~L~~C~~~~~l~~~~~~L~~L~L~~C~~L~~L~i~~p~L~~~~~~g~~~~~-~-~~~sL~~~~l~  391 (565)
                      .   +....++|+.|++.+|. +..++...++|+.|+++++ +++.+....++|+.+.++++.... . ...+|+.+++.
T Consensus       195 ~---l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls  269 (622)
T 3g06_A          195 S---LPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVY  269 (622)
T ss_dssp             C---CCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             C---CCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCC
Confidence            1   22345678888887753 3344444567888877766 455554444667777777765411 1 23467777776


Q ss_pred             cccccCCCCcccchHHHHHhhCCCCceEEEEEec
Q 008452          392 FNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLS  425 (565)
Q Consensus       392 ~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~  425 (565)
                      .|... .       +...+.++++|+.|+++.+.
T Consensus       270 ~N~L~-~-------lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          270 RNQLT-R-------LPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             SSCCC-S-------CCGGGGGSCTTCEEECCSCC
T ss_pred             CCCCC-c-------CCHHHhhccccCEEEecCCC
Confidence            54322 1       22246677888888887766

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.20  E-value=1.2e-11  Score=124.71  Aligned_cols=164  Identities=18%  Similarity=0.112  Sum_probs=86.2

Q ss_pred             CCcEEEEEEeCCCCcCccccccc-CcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTL-PQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      +++++|++...       ....+ |..+..+++|++|+|++|.+.....+..+++|++|+|++|.+++      +..++.
T Consensus        34 ~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~  100 (317)
T 3o53_A           34 WNVKELDLSGN-------PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPS  100 (317)
T ss_dssp             GGCSEEECTTS-------CCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTT
T ss_pred             CCCCEEECcCC-------ccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCC
Confidence            36777776552       11222 23455667777777777776652226677777777777776632      123477


Q ss_pred             CceeEeeecCCCcccccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeec-ccccccccccccc
Q 008452          233 LEDLNFFECLGLKLLCISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDI-AVCPNLKKFRAFN  309 (565)
Q Consensus       233 Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~~~~  309 (565)
                      |++|++++|.. +.+....+++|+.|++++|. ..+....+ .+++|++|++++|.+ ....+..+ ..+++|+.|++++
T Consensus       101 L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          101 IETLHAANNNI-SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             CCEEECCSSCC-SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEECTT
T ss_pred             cCEEECCCCcc-CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC-CcccHHHHhhccCcCCEEECCC
Confidence            77777777643 22333335677777777764 22222223 456777777777665 11111112 2445555555442


Q ss_pred             cchHHHHHHhcCCCCcceeecccc
Q 008452          310 LLGQEFCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       310 i~~~~l~~l~~~~~~L~~L~L~~C  333 (565)
                      ..-..++. ...+++|+.|+|++|
T Consensus       179 N~l~~~~~-~~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          179 NFIYDVKG-QVVFAKLKTLDLSSN  201 (317)
T ss_dssp             SCCCEEEC-CCCCTTCCEEECCSS
T ss_pred             CcCccccc-ccccccCCEEECCCC
Confidence            21111111 113555555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.20  E-value=1.4e-11  Score=122.03  Aligned_cols=190  Identities=18%  Similarity=0.093  Sum_probs=120.8

Q ss_pred             CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc---ccccCccccee
Q 008452          184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL---CISGAHKLKIL  258 (565)
Q Consensus       184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---~i~~~~~L~~L  258 (565)
                      ++|++|+|+++.+..  +..+..+++|++|+|+++.++.- ....+..+++|++|++++|..++.+   .+..+++|+.|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            578888888888776  34577888888888888877321 1223567888888888888644443   34457888888


Q ss_pred             Eccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHH-HHhcCCCCcceeecccccc
Q 008452          259 TMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFC-TLISKFPLLEDLSLFACSS  335 (565)
Q Consensus       259 ~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~-~l~~~~~~L~~L~L~~C~~  335 (565)
                      ++++|. ..+..-.+ .+++|++|+++++.+ .......++.+++|+.|++.+..-..++ ..+.++++|+.|+|++|..
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            888874 22212223 578888888888876 3333334677888888877643222222 2466788899999988743


Q ss_pred             ccccc---ccCCcccEEeecCCcChhhcc----ccCCCccceeEecCC
Q 008452          336 FERIT---ISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWYNP  376 (565)
Q Consensus       336 ~~~l~---~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g~~  376 (565)
                      .+..+   ..+++|+.|+++++. ++.+.    -..++|+.+.+++++
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence            22212   134678888877763 33222    123566666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.18  E-value=1.5e-11  Score=127.43  Aligned_cols=59  Identities=10%  Similarity=-0.007  Sum_probs=26.5

Q ss_pred             ccccEeeecCCCCCCCCce---eecccccccccccccc--cchHHH---HH-HhcCCCCcceeecccc
Q 008452          275 SSLQQLTLQFPFEGQGTPV---VDIAVCPNLKKFRAFN--LLGQEF---CT-LISKFPLLEDLSLFAC  333 (565)
Q Consensus       275 p~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~~~~--i~~~~l---~~-l~~~~~~L~~L~L~~C  333 (565)
                      ++|++|++++|.+.....+   ..+..+++|+.|++.+  +++..+   .. .+..+++|+.|+|++|
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n  226 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN  226 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC
Confidence            5566666655554211211   1233444555444442  333321   11 3445566666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.18  E-value=3.5e-11  Score=119.21  Aligned_cols=191  Identities=16%  Similarity=0.077  Sum_probs=113.0

Q ss_pred             CCcEEEEEEeCCCCcCcccccccC-cccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCee-echHHHHHHHhc
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLP-QTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVY-ITEQMVQKLLHE  229 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~-~~~~~l~~ll~~  229 (565)
                      +++++|++...       ....+| ..+..+++|++|+|++|.+..  +..+..+++|++|+|+++. ++.- ....+..
T Consensus        32 ~~l~~L~l~~n-------~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~  103 (285)
T 1ozn_A           32 AASQRIFLHGN-------RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHG  103 (285)
T ss_dssp             TTCSEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTT
T ss_pred             CCceEEEeeCC-------cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcC
Confidence            57777777652       222333 345567788888888877765  4566777888888888775 4211 1223556


Q ss_pred             CcCCceeEeeecCCCcc--cccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccc
Q 008452          230 CHFLEDLNFFECLGLKL--LCISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKF  305 (565)
Q Consensus       230 cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  305 (565)
                      +++|++|++++|.....  -.+..+++|+.|++++|. ..+..-.+ .+++|++|+++++.+ .......+..+++|+.|
T Consensus       104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L  182 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRL  182 (285)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEE
T ss_pred             CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHHHhcCccccCEE
Confidence            78888888887764322  124456788888888774 22221123 577888888888765 22222246677777777


Q ss_pred             cccccch-HHHHHHhcCCCCcceeeccccccccccc----ccCCcccEEeecCC
Q 008452          306 RAFNLLG-QEFCTLISKFPLLEDLSLFACSSFERIT----ISSNQLKHLSLVHC  354 (565)
Q Consensus       306 ~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~~~~~l~----~~~~~L~~L~L~~C  354 (565)
                      ++.+..- ...+..+..+++|+.|+|++|... .+.    ...++|+.|++++.
T Consensus       183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSS
T ss_pred             ECCCCcccccCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCC
Confidence            7663321 122445567778888888876322 221    12355666665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.18  E-value=2.3e-11  Score=130.08  Aligned_cols=102  Identities=19%  Similarity=0.121  Sum_probs=50.5

Q ss_pred             ccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCccccee
Q 008452          179 TVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKIL  258 (565)
Q Consensus       179 ~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L  258 (565)
                      .+..+++|++|+|++|.+.....+..+++|++|+|++|.+++      +...|.|+.|++++|.... +....+++|+.|
T Consensus        53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~l~~-~~~~~l~~L~~L  125 (487)
T 3oja_A           53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISR-VSCSRGQGKKNI  125 (487)
T ss_dssp             GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCCCC-EEECCCSSCEEE
T ss_pred             HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCcCCC-CCccccCCCCEE
Confidence            444556666666666655541125556666666666665521      1123556666666554322 222234556666


Q ss_pred             Eccccc-ccccchhh-cCccccEeeecCCCC
Q 008452          259 TMETLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       259 ~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      ++++|. .++....+ .+++|++|++++|.+
T Consensus       126 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (487)
T 3oja_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (487)
T ss_dssp             ECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred             ECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence            666553 22222222 455566666655554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.17  E-value=1.7e-10  Score=122.21  Aligned_cols=178  Identities=17%  Similarity=0.052  Sum_probs=98.0

Q ss_pred             CCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcccc
Q 008452          184 NFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETL  263 (565)
Q Consensus       184 ~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c  263 (565)
                      ++|++|++++|.+...+.+..+++|++|+++++.++.  +.   ...++|++|++++|....--.+..+++|+.|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            4677777777766663356677777777777776621  11   123467777777765422113445677777777776


Q ss_pred             cccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccccccC
Q 008452          264 SSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITISS  343 (565)
Q Consensus       264 ~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~~  343 (565)
                      .  +..+....++|++|++++|.+.  ..+ .++.+++|+.|++.+..-..+   ....++|+.|++++|. +..++...
T Consensus       206 ~--l~~l~~~~~~L~~L~l~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~l---~~~~~~L~~L~l~~N~-l~~l~~~~  276 (454)
T 1jl5_A          206 S--LKKLPDLPLSLESIVAGNNILE--ELP-ELQNLPFLTTIYADNNLLKTL---PDLPPSLEALNVRDNY-LTDLPELP  276 (454)
T ss_dssp             C--CSSCCCCCTTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSSC---CSCCTTCCEEECCSSC-CSCCCCCC
T ss_pred             c--CCcCCCCcCcccEEECcCCcCC--ccc-ccCCCCCCCEEECCCCcCCcc---cccccccCEEECCCCc-ccccCccc
Confidence            3  3333333457777777777652  222 366777777776653221111   1234677777777653 22343334


Q ss_pred             CcccEEeecCCcChhhccccCCCccceeEecCC
Q 008452          344 NQLKHLSLVHCASLKAINIDAPNLLSCNFWYNP  376 (565)
Q Consensus       344 ~~L~~L~L~~C~~L~~L~i~~p~L~~~~~~g~~  376 (565)
                      .+|+.|+++++. ++.+.--.++|+.+.++++.
T Consensus       277 ~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~  308 (454)
T 1jl5_A          277 QSLTFLDVSENI-FSGLSELPPNLYYLNASSNE  308 (454)
T ss_dssp             TTCCEEECCSSC-CSEESCCCTTCCEEECCSSC
T ss_pred             CcCCEEECcCCc-cCcccCcCCcCCEEECcCCc
Confidence            567777766652 22221112345555555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.17  E-value=1.7e-10  Score=125.59  Aligned_cols=140  Identities=13%  Similarity=0.042  Sum_probs=86.8

Q ss_pred             ccccccccccccccc-hHHHHHHhcCCCCcceeeccccccc--cccc---ccCCcccEEeecCCcChhh-cc----ccCC
Q 008452          297 AVCPNLKKFRAFNLL-GQEFCTLISKFPLLEDLSLFACSSF--ERIT---ISSNQLKHLSLVHCASLKA-IN----IDAP  365 (565)
Q Consensus       297 ~~~~~L~~L~~~~i~-~~~l~~l~~~~~~L~~L~L~~C~~~--~~l~---~~~~~L~~L~L~~C~~L~~-L~----i~~p  365 (565)
                      +.+++|+.|++.+.. .+..+..+.++++|+.|++++|.--  ..++   ...++|+.|+++++. +.. +.    ...+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcc
Confidence            566777777776322 1234455678889999999887322  1222   245788888888774 222 22    1336


Q ss_pred             CccceeEecCCCC---ceec-ccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccc-cccccC
Q 008452          366 NLLSCNFWYNPFP---IISI-NSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYK-FSRCCN  440 (565)
Q Consensus       366 ~L~~~~~~g~~~~---~~~~-~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~-~~~c~~  440 (565)
                      +|+.+.++++...   +..+ .+|+.++++.|... .       +...+.++++|++|+++.+...  .+|.. |..   
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~-------ip~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~---  495 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-S-------IPKDVTHLQALQELNVASNQLK--SVPDGVFDR---  495 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-C-------CCTTTTSSCCCSEEECCSSCCC--CCCTTSTTT---
T ss_pred             cCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-c-------cChhhcCCCCCCEEECCCCCCC--CCCHHHHhc---
Confidence            7888888877652   1122 57888888764322 1       2223448899999999988866  45554 555   


Q ss_pred             CCCCccceeEEE
Q 008452          441 SLPIQVETLRLR  452 (565)
Q Consensus       441 ~~p~~l~~L~l~  452 (565)
                        .++++.|.+.
T Consensus       496 --l~~L~~L~l~  505 (562)
T 3a79_B          496 --LTSLQYIWLH  505 (562)
T ss_dssp             --CTTCCCEECC
T ss_pred             --CCCCCEEEec
Confidence              3458888775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.16  E-value=5.9e-11  Score=120.33  Aligned_cols=153  Identities=12%  Similarity=-0.064  Sum_probs=84.7

Q ss_pred             cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccccccc
Q 008452          174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISG  251 (565)
Q Consensus       174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~  251 (565)
                      ..+|..+.  ++|+.|+|++|.+..  +..+..+++|++|+|+++.++.- ....+..+++|++|++++|.. +.+....
T Consensus        46 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~l~~~~  121 (332)
T 2ft3_A           46 KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHL-VEIPPNL  121 (332)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCC-CSCCSSC
T ss_pred             cccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcC-CccCccc
Confidence            34555443  577888888877766  34567788888888887776321 112346678888888877754 2222222


Q ss_pred             CcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCC-CceeecccccccccccccccchHHHHHHhcCCCCccee
Q 008452          252 AHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQG-TPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDL  328 (565)
Q Consensus       252 ~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L  328 (565)
                      .++|+.|+++++. ..+..-.+ .+++|++|+++++.+... ..+..++.+ +|+.|++.+..-..++..  ..++|+.|
T Consensus       122 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~--~~~~L~~L  198 (332)
T 2ft3_A          122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD--LPETLNEL  198 (332)
T ss_dssp             CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS--SCSSCSCC
T ss_pred             cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc--ccCCCCEE
Confidence            3677888887774 22221123 567788888777765211 122233344 566555543221111111  12466666


Q ss_pred             ecccc
Q 008452          329 SLFAC  333 (565)
Q Consensus       329 ~L~~C  333 (565)
                      +++++
T Consensus       199 ~l~~n  203 (332)
T 2ft3_A          199 HLDHN  203 (332)
T ss_dssp             BCCSS
T ss_pred             ECCCC
Confidence            66664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.15  E-value=8.2e-11  Score=119.23  Aligned_cols=16  Identities=6%  Similarity=-0.022  Sum_probs=9.7

Q ss_pred             HHhhCCCCceEEEEEe
Q 008452          409 FLRISKKIEELSIDFL  424 (565)
Q Consensus       409 ~l~~l~~Le~L~i~~~  424 (565)
                      .+..++.|+.+.+..+
T Consensus       315 ~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          315 TFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GGTTBCCSTTEEC---
T ss_pred             cccccchhhhhhcccc
Confidence            5667788888877543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.15  E-value=2.3e-10  Score=124.59  Aligned_cols=121  Identities=13%  Similarity=0.033  Sum_probs=72.6

Q ss_pred             CCcEEEEEEeCCCCcCcccccccC-cccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLP-QTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      +++++|+++..       ....++ ..+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++.  +...  .+
T Consensus        52 ~~L~~L~Ls~N-------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l  120 (562)
T 3a79_B           52 PRTKALSLSQN-------SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN--ISCC--PM  120 (562)
T ss_dssp             TTCCEEECCSS-------CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE--ECSC--CC
T ss_pred             CCcCEEECCCC-------CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc--cCcc--cc
Confidence            56777777652       222333 355667777777777777766  4456677777777777777631  1111  57


Q ss_pred             cCCceeEeeecCCCc-c--cccccCcccceeEcccccccccchhh-cCccc--cEeeecCCCC
Q 008452          231 HFLEDLNFFECLGLK-L--LCISGAHKLKILTMETLSSELKGVKI-VASSL--QQLTLQFPFE  287 (565)
Q Consensus       231 p~Le~L~L~~c~~l~-~--l~i~~~~~L~~L~l~~c~~~l~~i~~-~~p~L--~~L~l~~~~~  287 (565)
                      ++|++|++++|...+ .  -.+..+++|+.|+++++.  +....+ .+++|  +.|+++++.+
T Consensus       121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK--FRQLDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB--CCTTTTGGGTTSCEEEEEEEESSC
T ss_pred             ccCCEEECCCCCccccCchHhhcccCcccEEecCCCc--cccCchhhhhhceeeEEEeecccc
Confidence            777777777776422 1  134456777777777763  332333 34444  7777766653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.13  E-value=5e-11  Score=120.13  Aligned_cols=227  Identities=16%  Similarity=0.111  Sum_probs=161.3

Q ss_pred             cCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452          182 SANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT  259 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~  259 (565)
                      .+++|++|+|++|.+..  +..+..+++|++|+|++|.+.+..  . +..+++|++|++++|.. +.+  ..+++|+.|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l-~~l--~~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYV-QEL--LVGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEE-EEE--EECTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCcc-ccc--cCCCCcCEEE
Confidence            45799999999999887  346789999999999999883211  1 67899999999999853 322  2358999999


Q ss_pred             cccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccc--cchHHHHHHhcCCCCcceeeccccccc
Q 008452          260 METLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFN--LLGQEFCTLISKFPLLEDLSLFACSSF  336 (565)
Q Consensus       260 l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~--i~~~~l~~l~~~~~~L~~L~L~~C~~~  336 (565)
                      +++|.  +..+.. ..++|++|++++|.+ ....+..++.+++|+.|++++  ++......+...+++|+.|+|++|.- 
T Consensus       106 l~~n~--l~~~~~~~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-  181 (317)
T 3o53_A          106 AANNN--ISRVSCSRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-  181 (317)
T ss_dssp             CCSSC--CSEEEECCCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-
T ss_pred             CCCCc--cCCcCccccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-
Confidence            99984  444433 578999999999987 444556788899999988874  33333344556789999999999742 


Q ss_pred             cccc--ccCCcccEEeecCCcChhhcc---ccCCCccceeEecCCCC-----ceecccccceeeecccccCCCCcccchH
Q 008452          337 ERIT--ISSNQLKHLSLVHCASLKAIN---IDAPNLLSCNFWYNPFP-----IISINSQCSWNIHFNCQDDHDGGWFLNF  406 (565)
Q Consensus       337 ~~l~--~~~~~L~~L~L~~C~~L~~L~---i~~p~L~~~~~~g~~~~-----~~~~~sL~~~~l~~~~~~~~~~~~l~~l  406 (565)
                      ..+.  ...++|+.|+++++. ++.+.   ...++|+.+.++++...     +....+|+.+++..|..     . -..+
T Consensus       182 ~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~-----~-~~~~  254 (317)
T 3o53_A          182 YDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF-----H-CGTL  254 (317)
T ss_dssp             CEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC-----B-HHHH
T ss_pred             cccccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc-----c-CcCH
Confidence            2222  236789999998873 33221   24467888888887652     22335788888865321     1 1246


Q ss_pred             HHHHhhCCCCceEEEEEec
Q 008452          407 KDFLRISKKIEELSIDFLS  425 (565)
Q Consensus       407 ~~~l~~l~~Le~L~i~~~~  425 (565)
                      ..++..++.|+.|.+..+.
T Consensus       255 ~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          255 RDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             HHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhccccceEEECCCch
Confidence            6788888989888876444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.11  E-value=3.3e-11  Score=120.58  Aligned_cols=214  Identities=17%  Similarity=0.029  Sum_probs=114.4

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCccc-ccCCCccEEEecCccCCC----CCcccCCCcCcEEEcCCeeechHHHHHHHh
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTV-FSANFLTHLRLAGCKLEQ----PCYAMCFLSLKKLHLYGVYITEQMVQKLLH  228 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~c~l~~----~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~  228 (565)
                      +++++|++...       ....+|... ..+++|++|+|++|.+..    +..+..+++|++|+|+++.+..  +...+.
T Consensus        28 ~~l~~L~L~~n-------~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~   98 (306)
T 2z66_A           28 SSATRLELESN-------KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFL   98 (306)
T ss_dssp             TTCCEEECCSS-------CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEE
T ss_pred             CCCCEEECCCC-------ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcC
Confidence            35666666541       223455443 456677777777766553    2334456777777777766521  111144


Q ss_pred             cCcCCceeEeeecCCCcc---cccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccc
Q 008452          229 ECHFLEDLNFFECLGLKL---LCISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLK  303 (565)
Q Consensus       229 ~cp~Le~L~L~~c~~l~~---l~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~  303 (565)
                      .+++|++|++++|.....   -.+..+++|+.|++++|. .....-.+ .+++|++|+++++.+.....+..++.+++|+
T Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A           99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  178 (306)
T ss_dssp             TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence            567777777776643211   123345677777777664 11111112 4567777777776652212344566667777


Q ss_pred             cccccccchH-HHHHHhcCCCCcceeecccccccccc--c-ccCCcccEEeecCCcChhhcc----ccC-CCccceeEec
Q 008452          304 KFRAFNLLGQ-EFCTLISKFPLLEDLSLFACSSFERI--T-ISSNQLKHLSLVHCASLKAIN----IDA-PNLLSCNFWY  374 (565)
Q Consensus       304 ~L~~~~i~~~-~l~~l~~~~~~L~~L~L~~C~~~~~l--~-~~~~~L~~L~L~~C~~L~~L~----i~~-p~L~~~~~~g  374 (565)
                      .|++++..-. ..+..+..+++|+.|+|++|...+..  . ...++|+.|+++++. +....    ... ++|+.+.++|
T Consensus       179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTT
T ss_pred             EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccC
Confidence            6666532211 11334566777777777776322111  1 134677777777763 22211    122 3677777777


Q ss_pred             CCC
Q 008452          375 NPF  377 (565)
Q Consensus       375 ~~~  377 (565)
                      ++.
T Consensus       258 N~~  260 (306)
T 2z66_A          258 NDF  260 (306)
T ss_dssp             CCE
T ss_pred             CCe
Confidence            653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.11  E-value=8.4e-11  Score=118.02  Aligned_cols=174  Identities=18%  Similarity=0.144  Sum_probs=106.9

Q ss_pred             CCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCccc--ccCCCccEEEecCccCCC-C
Q 008452          123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTV--FSANFLTHLRLAGCKLEQ-P  199 (565)
Q Consensus       123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~c~l~~-~  199 (565)
                      ..++++.+....    .....+..........++++|++...      ......|..+  ..+++|++|+|++|.+.. .
T Consensus        64 ~~l~~l~l~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~n------~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~  133 (310)
T 4glp_A           64 LRVRRLTVGAAQ----VPAQLLVGALRVLAYSRLKELTLEDL------KITGTMPPLPLEATGLALSSLRLRNVSWATGR  133 (310)
T ss_dssp             CCCCEEEECSCC----CBHHHHHHHHHHHHHSCCCEEEEESC------CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred             cceeEEEEeCCc----CCHHHHHHHHHhcccCceeEEEeeCC------EeccchhhhhhhccCCCCCEEEeecccccchh
Confidence            345665554332    22445555555555577999998763      1223445555  567889999999988775 1


Q ss_pred             -----CcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc------cccccCcccceeEccccc-ccc
Q 008452          200 -----CYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL------LCISGAHKLKILTMETLS-SEL  267 (565)
Q Consensus       200 -----~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~------l~i~~~~~L~~L~l~~c~-~~l  267 (565)
                           ..+..+++|++|+|++|.+... ....++.+++|++|+|++|...+.      ..+..+++|+.|++++|. ..+
T Consensus       134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l  212 (310)
T 4glp_A          134 SWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP  212 (310)
T ss_dssp             SSHHHHHTTBCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH
T ss_pred             hhhHHHHhhhccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch
Confidence                 1224688899999988887221 123356788899999988875432      122356888889988884 211


Q ss_pred             cch----hhcCccccEeeecCCCCCCCCceeecccc---ccccccccc
Q 008452          268 KGV----KIVASSLQQLTLQFPFEGQGTPVVDIAVC---PNLKKFRAF  308 (565)
Q Consensus       268 ~~i----~~~~p~L~~L~l~~~~~~~~~~~~~l~~~---~~L~~L~~~  308 (565)
                      ..+    .-.+++|++|++++|.+ ....+..+..+   ++|+.|+++
T Consensus       213 ~~~~~~l~~~l~~L~~L~Ls~N~l-~~~~p~~~~~~~~~~~L~~L~Ls  259 (310)
T 4glp_A          213 TGVCAALAAAGVQPHSLDLSHNSL-RATVNPSAPRCMWSSALNSLNLS  259 (310)
T ss_dssp             HHHHHHHHHHTCCCSSEECTTSCC-CCCCCSCCSSCCCCTTCCCEECC
T ss_pred             HHHHHHHHhcCCCCCEEECCCCCC-CccchhhHHhccCcCcCCEEECC
Confidence            221    12568888888888886 33223334443   455555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.11  E-value=5.8e-11  Score=127.03  Aligned_cols=224  Identities=16%  Similarity=0.114  Sum_probs=153.1

Q ss_pred             CCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEc
Q 008452          183 ANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTM  260 (565)
Q Consensus       183 ~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l  260 (565)
                      +++|++|+|++|.+..  +..+..+++|++|+|++|.+++..  . +..+++|++|+|++|.. +.+.  ..++|+.|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l-~~l~--~~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYV-QELL--VGPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSEE-EEEE--ECTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCcC-CCCC--CCCCcCEEEC
Confidence            4589999999998887  457789999999999999883211  1 77899999999999853 3322  3489999999


Q ss_pred             ccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccc--cchHHHHHHhcCCCCcceeecccccccc
Q 008452          261 ETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFN--LLGQEFCTLISKFPLLEDLSLFACSSFE  337 (565)
Q Consensus       261 ~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~--i~~~~l~~l~~~~~~L~~L~L~~C~~~~  337 (565)
                      ++|.  +..+.. ..++|++|++++|.+ ....+..++.+++|+.|++++  ++......+...+++|+.|+|++|...+
T Consensus       107 ~~N~--l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNN--ISRVSCSRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSC--CCCEEECCCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCc--CCCCCccccCCCCEEECCCCCC-CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            9984  333333 568999999999987 455566788899999888874  3333333445578999999999974322


Q ss_pred             ccc-ccCCcccEEeecCCcChhhcc---ccCCCccceeEecCCCC-----ceecccccceeeecccccCCCCcccchHHH
Q 008452          338 RIT-ISSNQLKHLSLVHCASLKAIN---IDAPNLLSCNFWYNPFP-----IISINSQCSWNIHFNCQDDHDGGWFLNFKD  408 (565)
Q Consensus       338 ~l~-~~~~~L~~L~L~~C~~L~~L~---i~~p~L~~~~~~g~~~~-----~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~  408 (565)
                      ... ...++|+.|+|+++. +..+.   ...++|+.+.++++...     +....+|+.+++..|..     . -..+..
T Consensus       184 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l-----~-c~~~~~  256 (487)
T 3oja_A          184 VKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF-----H-CGTLRD  256 (487)
T ss_dssp             EECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB-----C-HHHHHH
T ss_pred             ccccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC-----c-CcchHH
Confidence            111 235789999988873 32221   23467788888777642     22234677777754321     0 123556


Q ss_pred             HHhhCCCCceEEEE
Q 008452          409 FLRISKKIEELSID  422 (565)
Q Consensus       409 ~l~~l~~Le~L~i~  422 (565)
                      ++..++.|+.+.+.
T Consensus       257 ~~~~l~~L~~l~~~  270 (487)
T 3oja_A          257 FFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHHhCCCCcEEecc
Confidence            67777777766653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.11  E-value=1.3e-10  Score=114.10  Aligned_cols=156  Identities=19%  Similarity=0.112  Sum_probs=87.8

Q ss_pred             cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--ccc
Q 008452          174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCI  249 (565)
Q Consensus       174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i  249 (565)
                      ..+|..+.  ++|++|+|++|.+..  +..+..+++|++|+|+++.++. .....+..+++|++|+|++|.....  -.+
T Consensus        29 ~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  105 (270)
T 2o6q_A           29 TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVF  105 (270)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHc
Confidence            34554432  578888888887776  3356778888888888877631 1112345678888888887754221  123


Q ss_pred             ccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHH-HHHhcCCCCcc
Q 008452          250 SGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEF-CTLISKFPLLE  326 (565)
Q Consensus       250 ~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l-~~l~~~~~~L~  326 (565)
                      ..+++|+.|+++++. ..+..-.+ .+++|++|+++++.+ .......++.+++|+.|++.+..-..+ ...+.++++|+
T Consensus       106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  184 (270)
T 2o6q_A          106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK  184 (270)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence            446778888887774 22222123 567788888877765 222222345555555555442211111 11234455555


Q ss_pred             eeecccc
Q 008452          327 DLSLFAC  333 (565)
Q Consensus       327 ~L~L~~C  333 (565)
                      .|+|++|
T Consensus       185 ~L~L~~N  191 (270)
T 2o6q_A          185 TLKLDNN  191 (270)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            5555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.10  E-value=6.2e-11  Score=121.24  Aligned_cols=151  Identities=17%  Similarity=0.103  Sum_probs=64.2

Q ss_pred             ccCCCccEEEecCccCCC-CC--cccCCCcCcEEEcCCee-echHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcc
Q 008452          181 FSANFLTHLRLAGCKLEQ-PC--YAMCFLSLKKLHLYGVY-ITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHK  254 (565)
Q Consensus       181 ~~~~~L~~L~L~~c~l~~-~~--~~~~l~~Lk~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~  254 (565)
                      ..+++|++|+|++|.+.. +.  .+..+++|++|+|+++. ++. .....+..+++|++|++++|.....  -.+..+++
T Consensus       121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  199 (353)
T 2z80_A          121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN  199 (353)
T ss_dssp             TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred             CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence            344555555555555444 22  34455555555555542 211 0011234455555555555543211  12233455


Q ss_pred             cceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceee---ccccccccccccc--ccch---HHHHHHhcCCCC
Q 008452          255 LKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVD---IAVCPNLKKFRAF--NLLG---QEFCTLISKFPL  324 (565)
Q Consensus       255 L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~---l~~~~~L~~L~~~--~i~~---~~l~~l~~~~~~  324 (565)
                      |+.|++++|. ..+..... .+++|++|+++++.+.... ...   ...+..++.+.+.  .+++   ..++..+..+++
T Consensus       200 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~  278 (353)
T 2z80_A          200 VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH-FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG  278 (353)
T ss_dssp             EEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC-CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred             CCeecCCCCccccchhhhhhhcccccEEECCCCcccccc-ccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence            5555555553 11111111 3556666666665542111 111   1122333333222  2222   234445566667


Q ss_pred             cceeecccc
Q 008452          325 LEDLSLFAC  333 (565)
Q Consensus       325 L~~L~L~~C  333 (565)
                      |+.|+|++|
T Consensus       279 L~~L~Ls~N  287 (353)
T 2z80_A          279 LLELEFSRN  287 (353)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            777777665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.09  E-value=4.1e-10  Score=119.30  Aligned_cols=246  Identities=13%  Similarity=0.030  Sum_probs=157.5

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL  233 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L  233 (565)
                      +++++|++...       ....+| .+..+++|++|++++|.+...+  ...++|++|+|+++.+..  +. -+..+++|
T Consensus       131 ~~L~~L~L~~n-------~l~~lp-~~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~--l~-~~~~l~~L  197 (454)
T 1jl5_A          131 PLLEYLGVSNN-------QLEKLP-ELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE--LP-ELQNLPFL  197 (454)
T ss_dssp             TTCCEEECCSS-------CCSSCC-CCTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS--CC-CCTTCTTC
T ss_pred             CCCCEEECcCC-------CCCCCc-ccCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc--Cc-cccCCCCC
Confidence            58999998762       233467 5788999999999999887622  234699999999998833  22 26789999


Q ss_pred             ceeEeeecCCCcccccccCcccceeEcccccccccch-hh-cCccccEeeecCCCCCCCCceeecccccccccccccccc
Q 008452          234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL  311 (565)
Q Consensus       234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~  311 (565)
                      ++|++++|...+ +... .++|+.|++++|.  +..+ .+ .+++|++|++++|.+..  .+.   ..++|+.|++.+..
T Consensus       198 ~~L~l~~N~l~~-l~~~-~~~L~~L~l~~n~--l~~lp~~~~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          198 TAIYADNNSLKK-LPDL-PLSLESIVAGNNI--LEELPELQNLPFLTTIYADNNLLKT--LPD---LPPSLEALNVRDNY  268 (454)
T ss_dssp             CEEECCSSCCSS-CCCC-CTTCCEEECCSSC--CSSCCCCTTCTTCCEEECCSSCCSS--CCS---CCTTCCEEECCSSC
T ss_pred             CEEECCCCcCCc-CCCC-cCcccEEECcCCc--CCcccccCCCCCCCEEECCCCcCCc--ccc---cccccCEEECCCCc
Confidence            999999986533 2111 3689999999985  3233 23 78899999999988632  111   23678877776432


Q ss_pred             hHHHHHHhcCCCCcceeecccccccccccccCCcccEEeecCCcChhhccccCCCccceeEecCCCCc--eeccccccee
Q 008452          312 GQEFCTLISKFPLLEDLSLFACSSFERITISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPI--ISINSQCSWN  389 (565)
Q Consensus       312 ~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~~~~~L~~L~L~~C~~L~~L~i~~p~L~~~~~~g~~~~~--~~~~sL~~~~  389 (565)
                      -..   +....++|+.|++++|. +..++.-.++|+.|+++++. ++.+.--.++|+.+.++++....  ....+|+.++
T Consensus       269 l~~---l~~~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~  343 (454)
T 1jl5_A          269 LTD---LPELPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLI  343 (454)
T ss_dssp             CSC---CCCCCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred             ccc---cCcccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccccccCCcCCEEE
Confidence            222   22335789999999874 33333223688888888763 33332111367777777765421  1125778888


Q ss_pred             eecccccCCCCcccchHHHHHhhCCCCceEEEEEeccccc-cccccccc
Q 008452          390 IHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSL-FNLYKFSR  437 (565)
Q Consensus       390 l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~-~~~~~~~~  437 (565)
                      +..|...    + +.   .   .+++|++|+++.+..... .+|..+..
T Consensus       344 L~~N~l~----~-lp---~---~l~~L~~L~L~~N~l~~l~~ip~~l~~  381 (454)
T 1jl5_A          344 ASFNHLA----E-VP---E---LPQNLKQLHVEYNPLREFPDIPESVED  381 (454)
T ss_dssp             CCSSCCS----C-CC---C---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             CCCCccc----c-cc---c---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence            8653321    1 11   1   367888898887774422 34555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.08  E-value=4.9e-11  Score=123.56  Aligned_cols=178  Identities=15%  Similarity=0.091  Sum_probs=95.8

Q ss_pred             cccccCCCccEEEecCccCCC-----CCc-------ccCCCcCcEEEcCCeeechH---HHHHHHhcCcCCceeEeeecC
Q 008452          178 QTVFSANFLTHLRLAGCKLEQ-----PCY-------AMCFLSLKKLHLYGVYITEQ---MVQKLLHECHFLEDLNFFECL  242 (565)
Q Consensus       178 ~~l~~~~~L~~L~L~~c~l~~-----~~~-------~~~l~~Lk~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~c~  242 (565)
                      ..+..+++|++|+|++|.+..     +..       +..+++|++|+|++|.+++.   .+...+..+++|++|+|++|.
T Consensus        54 ~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A           54 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            334456666777666653332     111       14566777777777666332   234445666777777777665


Q ss_pred             CCcc--ccc----ccC---------cccceeEccccc-c--cccch--hh-cCccccEeeecCCCCCCCC----ceeecc
Q 008452          243 GLKL--LCI----SGA---------HKLKILTMETLS-S--ELKGV--KI-VASSLQQLTLQFPFEGQGT----PVVDIA  297 (565)
Q Consensus       243 ~l~~--l~i----~~~---------~~L~~L~l~~c~-~--~l~~i--~~-~~p~L~~L~l~~~~~~~~~----~~~~l~  297 (565)
                      ....  ..+    ..+         ++|++|++++|. .  ++..+  .+ .+++|++|++++|.+....    .+..+.
T Consensus       134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~  213 (386)
T 2ca6_A          134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA  213 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred             CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence            4110  011    112         567777777664 1  11211  12 5667777777777652111    111455


Q ss_pred             cccccccccccc--cch---HHHHHHhcCCCCcceeeccccccccc----ccc-----cCCcccEEeecCCc
Q 008452          298 VCPNLKKFRAFN--LLG---QEFCTLISKFPLLEDLSLFACSSFER----ITI-----SSNQLKHLSLVHCA  355 (565)
Q Consensus       298 ~~~~L~~L~~~~--i~~---~~l~~l~~~~~~L~~L~L~~C~~~~~----l~~-----~~~~L~~L~L~~C~  355 (565)
                      .+++|+.|++++  +++   ..++..+..+++|+.|+|++|..-..    +..     .+++|+.|+|++|.
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            667777666653  232   44556677778888888887742211    111     15677777777764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.08  E-value=3.5e-10  Score=111.27  Aligned_cols=171  Identities=16%  Similarity=0.102  Sum_probs=95.4

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      .+++++|.+...       ....+ ..+..+++|++|+|++|.+...+.+..+++|++|+|++|.++.- ....+..+++
T Consensus        40 l~~L~~L~l~~~-------~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~  110 (272)
T 3rfs_A           40 LNSIDQIIANNS-------DIKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTN  110 (272)
T ss_dssp             HTTCCEEECTTS-------CCCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTT
T ss_pred             ccceeeeeeCCC-------Ccccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcC
Confidence            357777776542       11122 23556778888888888777655667778888888888776321 1123456778


Q ss_pred             CceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccccc
Q 008452          233 LEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF  308 (565)
Q Consensus       233 Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~  308 (565)
                      |++|++++|......  .+..+++|+.|++++|. ..+..-.+ .+++|++|++++|.+ .......++.+++|+.|++.
T Consensus       111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc-CccCHHHhcCCccCCEEECC
Confidence            888888777543221  13446777777777774 22211122 567777777777765 22222234455555555544


Q ss_pred             ccch-HHHHHHhcCCCCcceeecccc
Q 008452          309 NLLG-QEFCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       309 ~i~~-~~l~~l~~~~~~L~~L~L~~C  333 (565)
                      +..- ......+..+++|+.|+|.++
T Consensus       190 ~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          190 QNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCccCHHHHhCCcCCCEEEccCC
Confidence            2111 111123344555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.08  E-value=1.2e-10  Score=112.21  Aligned_cols=78  Identities=9%  Similarity=0.031  Sum_probs=32.4

Q ss_pred             CccEEEecCccCCC--CCcccCCCcCcEEEcCCee-echHHHHHHHhcCcCCceeEeeecCCCcccc---cccCccccee
Q 008452          185 FLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVY-ITEQMVQKLLHECHFLEDLNFFECLGLKLLC---ISGAHKLKIL  258 (565)
Q Consensus       185 ~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~---i~~~~~L~~L  258 (565)
                      +|++|+|+++.+..  +..+..+++|++|+|+++. ++.- ....+.++++|++|++.+|..++.+.   +..+++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            44555555554444  1234445555555555443 2100 00112344555555555433333221   2234455555


Q ss_pred             Ecccc
Q 008452          259 TMETL  263 (565)
Q Consensus       259 ~l~~c  263 (565)
                      ++++|
T Consensus       111 ~l~~n  115 (239)
T 2xwt_C          111 GIFNT  115 (239)
T ss_dssp             EEEEE
T ss_pred             eCCCC
Confidence            55544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.07  E-value=8.6e-11  Score=115.74  Aligned_cols=190  Identities=19%  Similarity=0.154  Sum_probs=98.3

Q ss_pred             CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeE
Q 008452          184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILT  259 (565)
Q Consensus       184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~  259 (565)
                      ++|++|+|++|.+..  +..+..+++|++|+|+++.++.- ....+..+++|++|++++|......  .+..+++|+.|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            356677777666655  22556666777777766655211 0112455666777777666532211  233456677777


Q ss_pred             ccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccccccc--ch---HHHHHHhcCCCCcc-eeecc
Q 008452          260 METLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL--LG---QEFCTLISKFPLLE-DLSLF  331 (565)
Q Consensus       260 l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i--~~---~~l~~l~~~~~~L~-~L~L~  331 (565)
                      +++|. ..+....+ .+++|++|+++++.+.....+..++.+++|+.|++++.  +.   ..+. .+.+++.|. .|+++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLS  185 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTTCCEEEECC
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh-hhhhccccceeeecC
Confidence            76664 22222223 56667777777666532233455666667776665532  11   1111 122233333 66666


Q ss_pred             ccccccccc---ccCCcccEEeecCCcChhhccc----cCCCccceeEecCCC
Q 008452          332 ACSSFERIT---ISSNQLKHLSLVHCASLKAINI----DAPNLLSCNFWYNPF  377 (565)
Q Consensus       332 ~C~~~~~l~---~~~~~L~~L~L~~C~~L~~L~i----~~p~L~~~~~~g~~~  377 (565)
                      ++.. ..+.   ....+|+.|+++++. ++.+..    ..++|+.+.++++++
T Consensus       186 ~n~l-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          186 LNPM-NFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             SSCC-CEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             CCcc-cccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCcc
Confidence            6532 2221   122367777777663 433321    245677777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.07  E-value=1.7e-10  Score=113.70  Aligned_cols=189  Identities=19%  Similarity=0.076  Sum_probs=107.1

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCc-ccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQ-TVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      +++++|++...       ....++. .+..+++|++|+|++|.+..  +..+..+++|++|+|+++.+..-. ...+..+
T Consensus        28 ~~l~~L~ls~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l   99 (276)
T 2z62_A           28 FSTKNLDLSFN-------PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGL   99 (276)
T ss_dssp             TTCCEEECTTC-------CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTC
T ss_pred             CCccEEECCCC-------cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCC
Confidence            46777777542       2223333 45567788888888887766  335677888888888887763211 1234667


Q ss_pred             cCCceeEeeecCCCc--ccccccCcccceeEccccc-cccc-chhh-cCccccEeeecCCCCCCCCceeecccccccc--
Q 008452          231 HFLEDLNFFECLGLK--LLCISGAHKLKILTMETLS-SELK-GVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLK--  303 (565)
Q Consensus       231 p~Le~L~L~~c~~l~--~l~i~~~~~L~~L~l~~c~-~~l~-~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~--  303 (565)
                      ++|++|++.+|....  ...+..+++|+.|+++++. ..+. .-.+ .+++|++|++++|.+ .......+..+++|+  
T Consensus       100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~l  178 (276)
T 2z62_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLL  178 (276)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGGGHHHHTCTTC
T ss_pred             ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC-CcCCHHHhhhhhhcccc
Confidence            888888887775422  2235556788888888774 1111 1123 567888888888775 222223444555555  


Q ss_pred             --cccccccchHHHHHHhcCCCCcceeecccccccccccc----cCCcccEEeec
Q 008452          304 --KFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERITI----SSNQLKHLSLV  352 (565)
Q Consensus       304 --~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~~----~~~~L~~L~L~  352 (565)
                        .|++++..-..+........+|+.|+|++|. +..++.    ..++|+.|+++
T Consensus       179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             CEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECC
T ss_pred             ceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEcc
Confidence              3444322111111112233478888888764 223321    23566666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.07  E-value=1.6e-10  Score=113.69  Aligned_cols=169  Identities=16%  Similarity=0.035  Sum_probs=113.7

Q ss_pred             cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeE
Q 008452          182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILT  259 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~  259 (565)
                      ..++|+.|.+.++.+...+.+..+++|++|+|+++.+.+-   ..+..+++|++|++++|......  .+..+++|+.|+
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            4568888999888877756677888999999988887331   14567888999999888543221  145578899999


Q ss_pred             ccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccch-HHHHHHhcCCCCcceeeccccccc
Q 008452          260 METLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLG-QEFCTLISKFPLLEDLSLFACSSF  336 (565)
Q Consensus       260 l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~~~  336 (565)
                      +++|. ..+..-.+ .+++|++|++++|.+ .......++.+++|+.|++.+..- ......+.++++|+.|++++|...
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            98885 22222223 678899999988876 333334467788888888764322 222334577888999999887432


Q ss_pred             cccc---ccCCcccEEeecCC
Q 008452          337 ERIT---ISSNQLKHLSLVHC  354 (565)
Q Consensus       337 ~~l~---~~~~~L~~L~L~~C  354 (565)
                      +...   ..+++|+.|++.++
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCHHHHhCCcCCCEEEccCC
Confidence            2221   23467888887765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.06  E-value=3.7e-10  Score=112.29  Aligned_cols=163  Identities=15%  Similarity=0.082  Sum_probs=104.5

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL  233 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L  233 (565)
                      +++++|++...       ....++ .+..+++|++|+|++|.+...+.+..+++|++|+|+++.+++  +.. +..+++|
T Consensus        46 ~~L~~L~l~~~-------~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L  114 (291)
T 1h6t_A           46 NSIDQIIANNS-------DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKL  114 (291)
T ss_dssp             HTCCEEECTTS-------CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTC
T ss_pred             CcccEEEccCC-------CcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCC
Confidence            57888877652       122333 356678888888888888773337788888888888888733  122 6778888


Q ss_pred             ceeEeeecCCCcccccccCcccceeEcccccccccchh-h-cCccccEeeecCCCCCCCCceeecccccccccccccccc
Q 008452          234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVK-I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL  311 (565)
Q Consensus       234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~-~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~  311 (565)
                      ++|++++|.....-.+..+++|+.|++++|.  +..+. + .+++|+.|++++|.+... .+  ++.+++|+.|++++..
T Consensus       115 ~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L~L~~N~l~~~-~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          115 KSLSLEHNGISDINGLVHLPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQISDI-VP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             CEEECTTSCCCCCGGGGGCTTCCEEECCSSC--CCCCGGGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCCEEECCSSC
T ss_pred             CEEECCCCcCCCChhhcCCCCCCEEEccCCc--CCcchhhccCCCCCEEEccCCccccc-hh--hcCCCccCEEECCCCc
Confidence            8888888865332234457888888888874  22222 2 678888888888876222 11  6666677766665322


Q ss_pred             hHHHHHHhcCCCCcceeecccc
Q 008452          312 GQEFCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       312 ~~~l~~l~~~~~~L~~L~L~~C  333 (565)
                      -..++. +..+++|+.|+++++
T Consensus       190 i~~l~~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          190 ISDLRA-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CCBCGG-GTTCTTCSEEEEEEE
T ss_pred             CCCChh-hccCCCCCEEECcCC
Confidence            212222 556666777776664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.05  E-value=1.4e-10  Score=116.52  Aligned_cols=150  Identities=17%  Similarity=0.110  Sum_probs=84.6

Q ss_pred             HhCCcEEEEEEeCCCCcCcccccccCccc--ccCCCccEEEecCccCCC-CCcccCC-----CcCcEEEcCCeeechHHH
Q 008452          152 IENGVKELDFQILPDIKDYVHTYTLPQTV--FSANFLTHLRLAGCKLEQ-PCYAMCF-----LSLKKLHLYGVYITEQMV  223 (565)
Q Consensus       152 ~~~~l~~L~L~~~~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~c~l~~-~~~~~~l-----~~Lk~L~L~~~~~~~~~l  223 (565)
                      ...++++|++...      .....+|..+  ..+++|++|+|++|.+.. +..+..+     ++|++|+|+++.++.- .
T Consensus        93 ~l~~L~~L~L~~n------~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~  165 (312)
T 1wwl_A           93 GISGLQELTLENL------EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-S  165 (312)
T ss_dssp             TTSCCCEEEEEEE------BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-C
T ss_pred             CcCCccEEEccCC------cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-h
Confidence            3467777777762      1123455554  556778888888777765 4334444     7777787777776221 1


Q ss_pred             HHHHhcCcCCceeEeeecCCCccc------ccccCcccceeEccccc-ccccchh----hcCccccEeeecCCCCCCCCc
Q 008452          224 QKLLHECHFLEDLNFFECLGLKLL------CISGAHKLKILTMETLS-SELKGVK----IVASSLQQLTLQFPFEGQGTP  292 (565)
Q Consensus       224 ~~ll~~cp~Le~L~L~~c~~l~~l------~i~~~~~L~~L~l~~c~-~~l~~i~----~~~p~L~~L~l~~~~~~~~~~  292 (565)
                      ...+..+++|++|++++|...+..      ....+++|+.|++++|. ..+..+.    ..+++|++|++++|.+.....
T Consensus       166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred             HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence            123456777777777777653321      11446777777777774 2111221    145777777777777522121


Q ss_pred             eeeccccccccccccc
Q 008452          293 VVDIAVCPNLKKFRAF  308 (565)
Q Consensus       293 ~~~l~~~~~L~~L~~~  308 (565)
                      ...+..+++|+.|+++
T Consensus       246 ~~~~~~l~~L~~L~Ls  261 (312)
T 1wwl_A          246 APSCDWPSQLNSLNLS  261 (312)
T ss_dssp             CSCCCCCTTCCEEECT
T ss_pred             hhhhhhcCCCCEEECC
Confidence            1233334455544444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.04  E-value=5.7e-10  Score=110.96  Aligned_cols=163  Identities=16%  Similarity=0.114  Sum_probs=120.9

Q ss_pred             cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcc
Q 008452          182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTME  261 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~  261 (565)
                      .+++|+.|.+++|.+...+.+..+++|++|+|+++.+++-  .. +..+++|++|++++|.....-.+..+++|+.|+++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE  120 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred             hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence            4678999999999888755688899999999999998332  12 78899999999999975433345668999999999


Q ss_pred             cccccccchh-h-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccc
Q 008452          262 TLSSELKGVK-I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERI  339 (565)
Q Consensus       262 ~c~~~l~~i~-~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l  339 (565)
                      +|.  +..+. + .+++|++|++++|.+...   ..++.+++|+.|++.+..-..+.. +..+++|+.|++++|. +..+
T Consensus       121 ~n~--i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l  193 (291)
T 1h6t_A          121 HNG--ISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDL  193 (291)
T ss_dssp             TSC--CCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBC
T ss_pred             CCc--CCCChhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCC
Confidence            995  33332 3 789999999999987322   467889999988887432222222 7889999999999873 2222


Q ss_pred             c--ccCCcccEEeecCC
Q 008452          340 T--ISSNQLKHLSLVHC  354 (565)
Q Consensus       340 ~--~~~~~L~~L~L~~C  354 (565)
                      .  ...++|+.|+++++
T Consensus       194 ~~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          194 RALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             GGGTTCTTCSEEEEEEE
T ss_pred             hhhccCCCCCEEECcCC
Confidence            2  23466777776655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.03  E-value=3.3e-10  Score=111.30  Aligned_cols=171  Identities=19%  Similarity=0.107  Sum_probs=119.6

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCc-ccccCCCccEEEecCccCCC-C-CcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQ-TVFSANFLTHLRLAGCKLEQ-P-CYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~-~-~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      .++++|++...       ....+|. .+..+++|++|+|++|.+.. + ..+..+++|++|+|+++.+..- ....+..+
T Consensus        37 ~~l~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l  108 (270)
T 2o6q_A           37 ADTKKLDLQSN-------KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQL  108 (270)
T ss_dssp             TTCSEEECCSS-------CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTC
T ss_pred             CCCCEEECcCC-------CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccc
Confidence            47888888762       2334444 56678999999999998877 3 3457899999999999988321 11345779


Q ss_pred             cCCceeEeeecCCCcc--cccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452          231 HFLEDLNFFECLGLKL--LCISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR  306 (565)
Q Consensus       231 p~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  306 (565)
                      ++|++|++.+|.....  -.+..+++|+.|++++|. ..+..-.+ .+++|++|+++++.+ .......+..+++|+.|+
T Consensus       109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~  187 (270)
T 2o6q_A          109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLK  187 (270)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC-cEeChhHhccCCCcCEEE
Confidence            9999999999865322  124557999999999985 22222223 679999999999986 333334577889999888


Q ss_pred             ccccchHHH-HHHhcCCCCcceeecccc
Q 008452          307 AFNLLGQEF-CTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       307 ~~~i~~~~l-~~l~~~~~~L~~L~L~~C  333 (565)
                      +.+..-..+ ...+..+++|+.|+|.++
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            764322222 234667888999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.00  E-value=4.9e-10  Score=122.62  Aligned_cols=165  Identities=15%  Similarity=0.077  Sum_probs=115.7

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      ..+|++|.+...       ....+| .+..+++|+.|+|++|.+...+.+..+++|+.|+|++|.+.+  +. .+..+++
T Consensus        42 L~~L~~L~l~~n-------~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~  110 (605)
T 1m9s_A           42 LNSIDQIIANNS-------DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKK  110 (605)
T ss_dssp             HTTCCCCBCTTC-------CCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTT
T ss_pred             CCCCCEEECcCC-------CCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCC
Confidence            357777776542       222333 467788999999999988873347889999999999998833  11 3677899


Q ss_pred             CceeEeeecCCCcccccccCcccceeEcccccccccch-hh-cCccccEeeecCCCCCCCCceeeccccccccccccccc
Q 008452          233 LEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL  310 (565)
Q Consensus       233 Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i  310 (565)
                      |+.|+|++|.....-.+..+++|+.|++++|.  +..+ .+ .+++|+.|++++|.+. ...+  +..+++|+.|++++.
T Consensus       111 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l~~l~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             CCEEECTTSCCCCCGGGGGCTTCSEEECCSSC--CCCCGGGGSCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCCCCccccCCCccCEEECCCCc--cCCchhhcccCCCCEEECcCCcCC-Cchh--hccCCCCCEEECcCC
Confidence            99999998865432235567899999999885  3323 23 7889999999988862 2222  778888888877643


Q ss_pred             chHHHHHHhcCCCCcceeeccccc
Q 008452          311 LGQEFCTLISKFPLLEDLSLFACS  334 (565)
Q Consensus       311 ~~~~l~~l~~~~~~L~~L~L~~C~  334 (565)
                      .-..+ ..+..+++|+.|+|++|.
T Consensus       186 ~i~~l-~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          186 HISDL-RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CCCBC-GGGTTCTTCSEEECCSEE
T ss_pred             CCCCC-hHHccCCCCCEEEccCCc
Confidence            22222 236778888888888864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.98  E-value=8.4e-10  Score=109.66  Aligned_cols=100  Identities=20%  Similarity=0.028  Sum_probs=46.6

Q ss_pred             CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeE
Q 008452          184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILT  259 (565)
Q Consensus       184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~  259 (565)
                      ++|+.|+|++|.+..  +..+..+++|++|+|+++.++.-..   ...+++|+.|++++|... .+  .+..+++|+.|+
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            455666666665554  3345556666666666655521100   134555666665555331 11  122345555555


Q ss_pred             ccccc-ccccchhh-cCccccEeeecCCCC
Q 008452          260 METLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       260 l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      ++++. ..+..-.+ .+++|++|++++|.+
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  136 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNEL  136 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence            55552 11111112 345555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.97  E-value=1e-09  Score=120.18  Aligned_cols=164  Identities=16%  Similarity=0.101  Sum_probs=121.7

Q ss_pred             cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcc
Q 008452          182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTME  261 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~  261 (565)
                      .+++|+.|.+++|.+...+.+..+++|+.|+|++|.+.+-.  . +..+++|+.|+|++|.....-.+..+++|+.|+++
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE  117 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEec
Confidence            46789999999999888667889999999999999983221  1 78999999999999965332245668999999999


Q ss_pred             cccccccchh-h-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccc
Q 008452          262 TLSSELKGVK-I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERI  339 (565)
Q Consensus       262 ~c~~~l~~i~-~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l  339 (565)
                      +|.  +..+. + .+++|+.|++++|.+...   ..++.+++|+.|++++..-..+.. +..+++|+.|+|++|.. ..+
T Consensus       118 ~N~--l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i-~~l  190 (605)
T 1m9s_A          118 HNG--ISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI-SDL  190 (605)
T ss_dssp             TSC--CCCCGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CBC
T ss_pred             CCC--CCCCccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC-CCC
Confidence            995  33332 3 789999999999987322   467888999988887433222222 78899999999998732 222


Q ss_pred             c--ccCCcccEEeecCCc
Q 008452          340 T--ISSNQLKHLSLVHCA  355 (565)
Q Consensus       340 ~--~~~~~L~~L~L~~C~  355 (565)
                      +  ..+++|+.|+|.+|+
T Consensus       191 ~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          191 RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             GGGTTCTTCSEEECCSEE
T ss_pred             hHHccCCCCCEEEccCCc
Confidence            2  234677777777653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.97  E-value=1.2e-09  Score=101.79  Aligned_cols=101  Identities=13%  Similarity=0.086  Sum_probs=50.1

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL  233 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L  233 (565)
                      +++++|++...       ....+| .+..+++|++|++++|.+...+.+..+++|++|+|+++.+++.... .+..+++|
T Consensus        44 ~~L~~L~l~~n-------~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L  114 (197)
T 4ezg_A           44 NSLTYITLANI-------NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSL  114 (197)
T ss_dssp             HTCCEEEEESS-------CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTC
T ss_pred             CCccEEeccCC-------CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccCh-hhcCCCCC
Confidence            45666666541       122344 3555566666666666554444555566666666666555322111 13445555


Q ss_pred             ceeEeeecCCCcc--cccccCcccceeEcccc
Q 008452          234 EDLNFFECLGLKL--LCISGAHKLKILTMETL  263 (565)
Q Consensus       234 e~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c  263 (565)
                      +.|++++|.....  -.+..+++|+.|++++|
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  146 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYN  146 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence            5555555543221  11233455555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.97  E-value=5.2e-10  Score=107.66  Aligned_cols=190  Identities=12%  Similarity=-0.029  Sum_probs=110.9

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCc-ccccCCCccEEEecCcc-CCC--CCcccCCCcCcEEEcCC-eeechHHHHHHHh
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQ-TVFSANFLTHLRLAGCK-LEQ--PCYAMCFLSLKKLHLYG-VYITEQMVQKLLH  228 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~-l~~--~~~~~~l~~Lk~L~L~~-~~~~~~~l~~ll~  228 (565)
                      .++++|++...       ....+|. .+..+++|++|++++|. +..  +..+.++++|++|+|++ +.+..- ....+.
T Consensus        31 ~~l~~L~l~~n-------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~  102 (239)
T 2xwt_C           31 PSTQTLKLIET-------HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALK  102 (239)
T ss_dssp             TTCCEEEEESC-------CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEE
T ss_pred             CcccEEEEeCC-------cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhC
Confidence            48899998872       2334555 45578999999999996 766  34678899999999987 665211 112356


Q ss_pred             cCcCCceeEeeecCCCcccccccCcccc---eeEcccc-c-ccccchhh-cCcccc-EeeecCCCCCCCCceeecccccc
Q 008452          229 ECHFLEDLNFFECLGLKLLCISGAHKLK---ILTMETL-S-SELKGVKI-VASSLQ-QLTLQFPFEGQGTPVVDIAVCPN  301 (565)
Q Consensus       229 ~cp~Le~L~L~~c~~l~~l~i~~~~~L~---~L~l~~c-~-~~l~~i~~-~~p~L~-~L~l~~~~~~~~~~~~~l~~~~~  301 (565)
                      ++++|++|++.+|....--.+..+++|+   .|+++++ . ..+..-.+ .+++|+ +|+++++.+.  ..+......++
T Consensus       103 ~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~~~~~~~  180 (239)
T 2xwt_C          103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGYAFNGTK  180 (239)
T ss_dssp             CCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTTTTTTCE
T ss_pred             CCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHhhcCCCC
Confidence            7899999999998653311234466776   8888887 3 22222223 678888 8888888751  11111111245


Q ss_pred             cccccccccc-hHHH-HHHhcCC-CCcceeecccccccccccc-cCCcccEEeecCC
Q 008452          302 LKKFRAFNLL-GQEF-CTLISKF-PLLEDLSLFACSSFERITI-SSNQLKHLSLVHC  354 (565)
Q Consensus       302 L~~L~~~~i~-~~~l-~~l~~~~-~~L~~L~L~~C~~~~~l~~-~~~~L~~L~L~~C  354 (565)
                      |+.|++.+.. -..+ ...+.++ ++|+.|+|+++. +..++. ...+|+.|.+.++
T Consensus       181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNT  236 (239)
T ss_dssp             EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC
T ss_pred             CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCc
Confidence            5555554221 1111 2234445 566666665532 222221 2344555554444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.96  E-value=5.9e-10  Score=108.21  Aligned_cols=156  Identities=15%  Similarity=0.082  Sum_probs=91.7

Q ss_pred             ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--c
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--C  248 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~  248 (565)
                      ...+|..+.  ++|+.|+|++|.+..  +..+..+++|++|+|+++.+..- ....+..+++|++|+|++|......  .
T Consensus        26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~  102 (251)
T 3m19_A           26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGV  102 (251)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhH
Confidence            345555443  578888888888877  44577888888888888877321 1233567888888888887643211  2


Q ss_pred             cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHH-HHHhcCCCCc
Q 008452          249 ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEF-CTLISKFPLL  325 (565)
Q Consensus       249 i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l-~~l~~~~~~L  325 (565)
                      +..+++|+.|+++++. ..+..-.+ .+++|++|++++|.+ .......++.+++|+.|++.+..-..+ ...+..+++|
T Consensus       103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            3446788888888774 22222122 567888888888775 222222345555555555442211111 1233445555


Q ss_pred             ceeeccc
Q 008452          326 EDLSLFA  332 (565)
Q Consensus       326 ~~L~L~~  332 (565)
                      +.|+|.+
T Consensus       182 ~~L~l~~  188 (251)
T 3m19_A          182 QTITLFG  188 (251)
T ss_dssp             CEEECCS
T ss_pred             CEEEeeC
Confidence            5555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.96  E-value=2e-09  Score=106.96  Aligned_cols=170  Identities=18%  Similarity=0.055  Sum_probs=117.2

Q ss_pred             cccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCccccee
Q 008452          180 VFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKIL  258 (565)
Q Consensus       180 l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L  258 (565)
                      +.++++|++++++++.+.. +...  .++|+.|+|+++.++.-. ...+..+++|++|+|++|.....-....+++|+.|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence            4567799999999998887 4333  479999999999883221 23467899999999999865332223457999999


Q ss_pred             Eccccc-ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHH-HHHHhcCCCCcceeeccccccc
Q 008452          259 TMETLS-SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQE-FCTLISKFPLLEDLSLFACSSF  336 (565)
Q Consensus       259 ~l~~c~-~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~-l~~l~~~~~~L~~L~L~~C~~~  336 (565)
                      +++++. ..+......+++|++|++++|.+ ....+..++.+++|+.|++.+..-.. ....+..+++|+.|+|+++. +
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l  160 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-L  160 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-C
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-C
Confidence            999985 22222223689999999999987 34344567888899988876432222 23345678899999998863 2


Q ss_pred             ccccc----cCCcccEEeecCC
Q 008452          337 ERITI----SSNQLKHLSLVHC  354 (565)
Q Consensus       337 ~~l~~----~~~~L~~L~L~~C  354 (565)
                      ..++.    ..++|+.|+++++
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccCHHHhcCcCCCCEEECCCC
Confidence            33332    2356666766655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.94  E-value=2e-09  Score=100.38  Aligned_cols=123  Identities=14%  Similarity=0.078  Sum_probs=63.9

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH  231 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp  231 (565)
                      +++++|++....        ...+..+..+++|++|++++|.+..  +..+..+++|++|+|++|.+++... ..+..++
T Consensus        66 ~~L~~L~l~~n~--------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~  136 (197)
T 4ezg_A           66 HNIKDLTINNIH--------ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLP  136 (197)
T ss_dssp             TTCSEEEEESCC--------CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCS
T ss_pred             CCCCEEEccCCC--------CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCC
Confidence            466666666521        1112244456666666666666654  4555566666666666666643322 2345566


Q ss_pred             CCceeEeeecCCCccc-ccccCcccceeEcccccccccch-hh-cCccccEeeecCCCC
Q 008452          232 FLEDLNFFECLGLKLL-CISGAHKLKILTMETLSSELKGV-KI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       232 ~Le~L~L~~c~~l~~l-~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L~~L~l~~~~~  287 (565)
                      +|++|++++|..++.+ .+..+++|+.|++++|.  +..+ .+ .+++|+.|+++++.+
T Consensus       137 ~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~--i~~~~~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG--VHDYRGIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             SCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC--CCCCTTGGGCSSCCEEEECBC--
T ss_pred             CCCEEEccCCCCccccHhhcCCCCCCEEECCCCC--CcChHHhccCCCCCEEEeeCccc
Confidence            6666666666533332 23335566666666553  2111 22 455555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.92  E-value=6.5e-10  Score=114.08  Aligned_cols=113  Identities=15%  Similarity=0.029  Sum_probs=73.7

Q ss_pred             ccCcccccCCCccEEEecCccCCC-C-----CcccCCC-cCcEEEcCCeeech---HHHHHHHhcC-cCCceeEeeecCC
Q 008452          175 TLPQTVFSANFLTHLRLAGCKLEQ-P-----CYAMCFL-SLKKLHLYGVYITE---QMVQKLLHEC-HFLEDLNFFECLG  243 (565)
Q Consensus       175 ~lp~~l~~~~~L~~L~L~~c~l~~-~-----~~~~~l~-~Lk~L~L~~~~~~~---~~l~~ll~~c-p~Le~L~L~~c~~  243 (565)
                      .+|..+...++|++|+|++|.+.. .     ..+..++ +|++|+|++|.+++   ..+..++..+ +.|++|+|++|..
T Consensus        13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            344444445679999999998876 2     3456777 89999999998843   3455555554 8999999999864


Q ss_pred             Cccc--c----cccC-cccceeEccccc-ccc--cchh--h-c-CccccEeeecCCCC
Q 008452          244 LKLL--C----ISGA-HKLKILTMETLS-SEL--KGVK--I-V-ASSLQQLTLQFPFE  287 (565)
Q Consensus       244 l~~l--~----i~~~-~~L~~L~l~~c~-~~l--~~i~--~-~-~p~L~~L~l~~~~~  287 (565)
                      ....  .    +..+ ++|+.|++++|. ...  ..+.  + . +++|++|++++|.+
T Consensus        93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  150 (362)
T 3goz_A           93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL  150 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred             ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence            2211  1    2223 688888888885 111  1111  1 1 35888888888875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.89  E-value=1.9e-09  Score=108.12  Aligned_cols=125  Identities=16%  Similarity=0.034  Sum_probs=82.7

Q ss_pred             CCCccEEEecCccCCC--CCcc--cCCCcCcEEEcCCeeechH--HHH-HHHhcCcCCceeEeeecCCCccc--ccccCc
Q 008452          183 ANFLTHLRLAGCKLEQ--PCYA--MCFLSLKKLHLYGVYITEQ--MVQ-KLLHECHFLEDLNFFECLGLKLL--CISGAH  253 (565)
Q Consensus       183 ~~~L~~L~L~~c~l~~--~~~~--~~l~~Lk~L~L~~~~~~~~--~l~-~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~  253 (565)
                      .++|++|+|++|.+..  +..+  ..+++|++|+|++|.++..  .+. .-+..+++|++|+|++|......  .+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4679999999998876  4444  8899999999999998431  111 22347999999999999763322  344578


Q ss_pred             ccceeEccccc-ccccch---h--hcCccccEeeecCCCCCCCCcee---eccccccccccccc
Q 008452          254 KLKILTMETLS-SELKGV---K--IVASSLQQLTLQFPFEGQGTPVV---DIAVCPNLKKFRAF  308 (565)
Q Consensus       254 ~L~~L~l~~c~-~~l~~i---~--~~~p~L~~L~l~~~~~~~~~~~~---~l~~~~~L~~L~~~  308 (565)
                      +|+.|++++|. .+...+   .  ..+++|++|++++|.+ ......   .++.+++|+.|+++
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls  232 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLS  232 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECT
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECC
Confidence            99999999885 111111   1  2577888888888875 111000   13445556655554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.89  E-value=1.2e-09  Score=112.12  Aligned_cols=174  Identities=14%  Similarity=0.037  Sum_probs=88.2

Q ss_pred             cccCC-CccEEEecCccCCC--CCcccC-----CCcCcEEEcCCeeech---HHHHHHHhcC-cCCceeEeeecCCCccc
Q 008452          180 VFSAN-FLTHLRLAGCKLEQ--PCYAMC-----FLSLKKLHLYGVYITE---QMVQKLLHEC-HFLEDLNFFECLGLKLL  247 (565)
Q Consensus       180 l~~~~-~L~~L~L~~c~l~~--~~~~~~-----l~~Lk~L~L~~~~~~~---~~l~~ll~~c-p~Le~L~L~~c~~l~~l  247 (565)
                      +..++ +|++|+|++|.+..  +..+..     +++|++|+|++|.+++   ..+...+..+ ++|++|+|++|.. +..
T Consensus        46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~  124 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSK  124 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGS
T ss_pred             HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcH
Confidence            34455 67777777776654  222222     2677777777777632   2344444555 6777777777753 211


Q ss_pred             c-------ccc-CcccceeEccccc-c--cccchh--h-cCc-cccEeeecCCCCCCCCcee----ecccc-cccccccc
Q 008452          248 C-------ISG-AHKLKILTMETLS-S--ELKGVK--I-VAS-SLQQLTLQFPFEGQGTPVV----DIAVC-PNLKKFRA  307 (565)
Q Consensus       248 ~-------i~~-~~~L~~L~l~~c~-~--~l~~i~--~-~~p-~L~~L~l~~~~~~~~~~~~----~l~~~-~~L~~L~~  307 (565)
                      .       +.. +.+|++|++++|. .  +...+.  + ..+ +|++|++++|.+. .....    .+..+ ++|+.|++
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~L  203 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA-SKNCAELAKFLASIPASVTSLDL  203 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc-hhhHHHHHHHHHhCCCCCCEEEC
Confidence            1       111 2477777777764 1  111221  1 233 6777777777652 22111    22233 36666665


Q ss_pred             cc--cch---HHHHHHhcC-CCCcceeecccccccc-------cccccCCcccEEeecCCc
Q 008452          308 FN--LLG---QEFCTLISK-FPLLEDLSLFACSSFE-------RITISSNQLKHLSLVHCA  355 (565)
Q Consensus       308 ~~--i~~---~~l~~l~~~-~~~L~~L~L~~C~~~~-------~l~~~~~~L~~L~L~~C~  355 (565)
                      ++  +++   ..+...+.. .++|+.|+|++|.--.       .+....++|+.|++++|.
T Consensus       204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            53  222   224444433 3577777777762211       111233566666666653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.88  E-value=2.2e-09  Score=107.78  Aligned_cols=193  Identities=17%  Similarity=0.061  Sum_probs=121.9

Q ss_pred             CCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccC-----CCccEEEecCccCC
Q 008452          123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSA-----NFLTHLRLAGCKLE  197 (565)
Q Consensus       123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~-----~~L~~L~L~~c~l~  197 (565)
                      ..++.+.+......... ...    +.....+++++|+++..       ....+|..+...     ++|++|+|++|.+.
T Consensus        95 ~~L~~L~L~~n~l~~~~-~~~----~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~  162 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTA-PPP----LLEATGPDLNILNLRNV-------SWATRDAWLAELQQWLKPGLKVLSIAQAHSL  162 (312)
T ss_dssp             SCCCEEEEEEEBCBSCC-CCC----SSSCCSCCCSEEEEESC-------BCSSSSSHHHHHHTTCCTTCCEEEEESCSCC
T ss_pred             CCccEEEccCCcccchh-HHH----HHHhcCCCccEEEccCC-------CCcchhHHHHHHHHhhcCCCcEEEeeCCCCc
Confidence            67889999887622110 000    00112468999999872       233335555554     89999999999988


Q ss_pred             C--CCcccCCCcCcEEEcCCeeech-HHHHHHH--hcCcCCceeEeeecCCCc--ccc---cccCcccceeEccccc-cc
Q 008452          198 Q--PCYAMCFLSLKKLHLYGVYITE-QMVQKLL--HECHFLEDLNFFECLGLK--LLC---ISGAHKLKILTMETLS-SE  266 (565)
Q Consensus       198 ~--~~~~~~l~~Lk~L~L~~~~~~~-~~l~~ll--~~cp~Le~L~L~~c~~l~--~l~---i~~~~~L~~L~l~~c~-~~  266 (565)
                      .  +..+..+++|++|+|++|.+.. ..+..-+  ..+++|++|++++|....  .+.   ...+++|+.|++++|. .+
T Consensus       163 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence            7  4678899999999999998732 2232233  789999999999996532  211   1246899999999985 22


Q ss_pred             ccchh-h-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccc
Q 008452          267 LKGVK-I-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFA  332 (565)
Q Consensus       267 l~~i~-~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~  332 (565)
                      ..... . .+++|++|++++|.+.  ..+..+.  ++|+.|++++..-..++. +..+++|+.|+|++
T Consensus       243 ~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          243 AAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKG  305 (312)
T ss_dssp             SCCCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTT
T ss_pred             ccchhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccC
Confidence            22112 2 4689999999999873  2232222  556655555322111122 44555566665554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.83  E-value=4.6e-09  Score=102.71  Aligned_cols=143  Identities=15%  Similarity=0.079  Sum_probs=82.9

Q ss_pred             ccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEc
Q 008452          181 FSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTM  260 (565)
Q Consensus       181 ~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l  260 (565)
                      ..+++|++|++++|.+...+.+..+++|++|+|+++.+++-  .. +..+++|++|++++|..-..-.+.. ++|+.|++
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L  113 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFL  113 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEEC
T ss_pred             hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEc
Confidence            34567777777777666634566677777777777766221  11 5667777777777775422112222 67777777


Q ss_pred             ccccccccch-hh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccc
Q 008452          261 ETLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       261 ~~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C  333 (565)
                      ++|.  +..+ .+ .+++|+.|++++|.+...   ..++.+++|+.|++.+..-..+ ..+..+++|+.|+++++
T Consensus       114 ~~N~--l~~~~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          114 DNNE--LRDTDSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CSSC--CSBSGGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred             cCCc--cCCChhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence            7764  2222 22 567777777777765221   1455566666555542211111 34566777777777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.83  E-value=4e-09  Score=99.07  Aligned_cols=150  Identities=18%  Similarity=0.084  Sum_probs=87.9

Q ss_pred             cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--cc
Q 008452          174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CI  249 (565)
Q Consensus       174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i  249 (565)
                      ..+|..+  .++|++|+|+++.+..  +..+..+++|++|+|+++.+..- ....+..+++|++|+|++|......  .+
T Consensus        20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   96 (208)
T 2o6s_A           20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVF   96 (208)
T ss_dssp             SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence            3445443  3578888998888776  33467888888888888877311 1223567888888888888542211  13


Q ss_pred             ccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcce
Q 008452          250 SGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLED  327 (565)
Q Consensus       250 ~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~  327 (565)
                      ..+++|+.|+++++. ..+..-.+ .+++|++|++++|.+ .......+..+++|+.|++.+.      .+...+++|+.
T Consensus        97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N------~~~~~~~~l~~  169 (208)
T 2o6s_A           97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN------PWDCTCPGIRY  169 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSC------CBCCCTTTTHH
T ss_pred             cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCC------CeecCCCCHHH
Confidence            456788888888774 22222123 567888888888775 2222222444555555544422      11233445555


Q ss_pred             eecccc
Q 008452          328 LSLFAC  333 (565)
Q Consensus       328 L~L~~C  333 (565)
                      |+++.+
T Consensus       170 L~~~~n  175 (208)
T 2o6s_A          170 LSEWIN  175 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.78  E-value=4.3e-09  Score=95.28  Aligned_cols=127  Identities=17%  Similarity=0.100  Sum_probs=74.8

Q ss_pred             CCccEEEecCccCC--C-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc--cccCccccee
Q 008452          184 NFLTHLRLAGCKLE--Q-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC--ISGAHKLKIL  258 (565)
Q Consensus       184 ~~L~~L~L~~c~l~--~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~--i~~~~~L~~L  258 (565)
                      ++|++|+|++|.+.  . +..+..+++|++|+|++|.++.-   ..+..+++|++|++++|.....+.  +..+++|+.|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            67888888888877  3 55567788888888888877332   345667777777777775433111  1124566666


Q ss_pred             Eccccc-ccccc-hhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccc
Q 008452          259 TMETLS-SELKG-VKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACS  334 (565)
Q Consensus       259 ~l~~c~-~~l~~-i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~  334 (565)
                      ++++|. ..+.. -.+ .+++|+.|++++|.+...                     .......+..+++|+.|++.+|.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~---------------------~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL---------------------NDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS---------------------TTHHHHHHTTCSSCCEETTEETT
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch---------------------HHHHHHHHHhCccCcEecCCCCC
Confidence            666653 11111 112 445555555555543100                     01112356778888888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.74  E-value=1.4e-08  Score=98.38  Aligned_cols=147  Identities=20%  Similarity=0.113  Sum_probs=103.9

Q ss_pred             CCcEEEEEEeCCCCcCccccccc-CcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTL-PQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      .+++.|++...       ....+ +..+..+++|++|+|++|.+..  +..+..+++|++|+|+++.++.- ....+..+
T Consensus        35 ~~l~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l  106 (251)
T 3m19_A           35 ADTEKLDLQST-------GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHL  106 (251)
T ss_dssp             TTCCEEECTTS-------CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTC
T ss_pred             CCCCEEEccCC-------CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhccc
Confidence            47788877652       12223 3356678999999999998887  44578899999999999988421 12345678


Q ss_pred             cCCceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452          231 HFLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR  306 (565)
Q Consensus       231 p~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  306 (565)
                      ++|++|+|++|......  .+..+++|+.|++++|. ..+..-.+ .+++|++|++++|.+ .......+..+++|+.|+
T Consensus       107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~  185 (251)
T 3m19_A          107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTIT  185 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC-CccCHHHHhCCCCCCEEE
Confidence            99999999998653211  23457999999999985 22222224 678999999999987 333444677888999888


Q ss_pred             ccc
Q 008452          307 AFN  309 (565)
Q Consensus       307 ~~~  309 (565)
                      +.+
T Consensus       186 l~~  188 (251)
T 3m19_A          186 LFG  188 (251)
T ss_dssp             CCS
T ss_pred             eeC
Confidence            763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.72  E-value=2.1e-08  Score=90.66  Aligned_cols=128  Identities=18%  Similarity=0.026  Sum_probs=98.2

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL  233 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L  233 (565)
                      +++++|++....     .....+|..+..+++|++|+|++|.+.....+..+++|++|+|++|.+... +..++..+++|
T Consensus        24 ~~L~~L~l~~n~-----l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L   97 (168)
T 2ell_A           24 AAVRELVLDNCK-----SNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNL   97 (168)
T ss_dssp             TSCSEEECCSCB-----CBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTC
T ss_pred             ccCCEEECCCCC-----CChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCC
Confidence            578888887621     111367777788999999999999887766778899999999999998432 45667789999


Q ss_pred             ceeEeeecCCCc--c-cccccCcccceeEccccc-ccccc---hhh-cCccccEeeecCCCC
Q 008452          234 EDLNFFECLGLK--L-LCISGAHKLKILTMETLS-SELKG---VKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       234 e~L~L~~c~~l~--~-l~i~~~~~L~~L~l~~c~-~~l~~---i~~-~~p~L~~L~l~~~~~  287 (565)
                      +.|++++|....  . -.+..+++|+.|++++|. .....   -.+ .+|+|++|+++++..
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            999999996533  1 234568999999999996 33322   123 789999999998875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.71  E-value=2e-08  Score=88.91  Aligned_cols=105  Identities=21%  Similarity=0.101  Sum_probs=63.2

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL  233 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L  233 (565)
                      +++++|++...  .   .....+|..+..+++|++|++++|.+.....+..+++|++|+|++|.++.. +...+..+++|
T Consensus        17 ~~l~~L~l~~n--~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L   90 (149)
T 2je0_A           17 SDVKELVLDNS--R---SNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNL   90 (149)
T ss_dssp             GGCSEEECTTC--B---CBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTC
T ss_pred             ccCeEEEccCC--c---CChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCC
Confidence            35666666542  1   111356666666777777777777766555566677777777777777332 44555667777


Q ss_pred             ceeEeeecCCCcc---cccccCcccceeEccccc
Q 008452          234 EDLNFFECLGLKL---LCISGAHKLKILTMETLS  264 (565)
Q Consensus       234 e~L~L~~c~~l~~---l~i~~~~~L~~L~l~~c~  264 (565)
                      ++|++++|.....   -.+..+++|+.|++++|.
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            7777777754221   123345666666666664

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.70  E-value=7.8e-09  Score=74.24  Aligned_cols=38  Identities=26%  Similarity=0.314  Sum_probs=33.4

Q ss_pred             CCcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhh
Q 008452           30 MDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFH   67 (565)
Q Consensus        30 ~D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw   67 (565)
                      .+.++.||+||+.+||++|+.+|+++++.|||+|+++.
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            34689999999999999999999999999999999763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.69  E-value=4e-09  Score=93.44  Aligned_cols=101  Identities=17%  Similarity=0.050  Sum_probs=66.8

Q ss_pred             CCccEEEecCccCC--C-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc--cccCccccee
Q 008452          184 NFLTHLRLAGCKLE--Q-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC--ISGAHKLKIL  258 (565)
Q Consensus       184 ~~L~~L~L~~c~l~--~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~--i~~~~~L~~L  258 (565)
                      ++|+.|++++|.+.  . +..+..+++|++|+|++|.+++-   ..+..+++|+.|++++|.....+.  +..+++|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            68999999999887  3 66668899999999999988432   446678888888888876533221  1225677777


Q ss_pred             Eccccc-ccccc-hhh-cCccccEeeecCCCC
Q 008452          259 TMETLS-SELKG-VKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       259 ~l~~c~-~~l~~-i~~-~~p~L~~L~l~~~~~  287 (565)
                      ++++|. ..+.. -.+ .+++|++|++++|.+
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            777664 11111 112 556666666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.69  E-value=3.5e-08  Score=106.89  Aligned_cols=174  Identities=15%  Similarity=0.030  Sum_probs=105.3

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      ..+++.|++...       ....+|..++  ++|++|+|++|.+...+  ..+++|++|+|++|.++.  +.. +.  .+
T Consensus        58 ~~~L~~L~Ls~n-------~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~  121 (571)
T 3cvr_A           58 INQFSELQLNRL-------NLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--AS  121 (571)
T ss_dssp             HTTCSEEECCSS-------CCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TT
T ss_pred             cCCccEEEeCCC-------CCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cC
Confidence            357888887762       2334666554  68899999998887633  567889999998888732  222 22  28


Q ss_pred             CceeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccch
Q 008452          233 LEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLG  312 (565)
Q Consensus       233 Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~  312 (565)
                      |+.|+|++|.... +.- .+++|+.|++++|.  +..+...+++|++|++++|.+..  .+. +.  ++|+.|++++..-
T Consensus       122 L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          122 LKHLDVDNNQLTM-LPE-LPALLEYINADNNQ--LTMLPELPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLL  192 (571)
T ss_dssp             CCEEECCSSCCSC-CCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCC-CCC-cCccccEEeCCCCc--cCcCCCcCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCC
Confidence            8888888886432 332 46888888888884  33343366788888888888633  222 43  6777776653322


Q ss_pred             HHHHHHhcCCCCc-------ceeecccccccccccc---cCCcccEEeecCCc
Q 008452          313 QEFCTLISKFPLL-------EDLSLFACSSFERITI---SSNQLKHLSLVHCA  355 (565)
Q Consensus       313 ~~l~~l~~~~~~L-------~~L~L~~C~~~~~l~~---~~~~L~~L~L~~C~  355 (565)
                      ..++. +..  +|       +.|+|++|. +..++.   ..++|+.|+|++++
T Consensus       193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          193 ESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             SSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSS
T ss_pred             Cchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCc
Confidence            22222 111  44       777777652 222321   23455666655553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.66  E-value=3e-08  Score=101.09  Aligned_cols=33  Identities=21%  Similarity=0.065  Sum_probs=15.9

Q ss_pred             CccEEEecCccCCC-CC-cccCCCcCcEEEcCCee
Q 008452          185 FLTHLRLAGCKLEQ-PC-YAMCFLSLKKLHLYGVY  217 (565)
Q Consensus       185 ~L~~L~L~~c~l~~-~~-~~~~l~~Lk~L~L~~~~  217 (565)
                      ++++|+|++|.+.. ++ .+.++++|++|+|++|.
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   65 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND   65 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence            45555555554444 22 24455555555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.63  E-value=3.8e-08  Score=89.10  Aligned_cols=92  Identities=12%  Similarity=0.126  Sum_probs=73.9

Q ss_pred             ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCee-echHHHHHHHhc---CcCCceeEeeecCCCcc
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVY-ITEQMVQKLLHE---CHFLEDLNFFECLGLKL  246 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~L~~c~~l~~  246 (565)
                      ...+|..-...-.|++|+|++|.+.+  .....+|++|++|+|++|. ++|.++..+...   |+.|++|+|++|..+++
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            34566543344589999999998876  4556789999999999997 599999998763   88999999999998776


Q ss_pred             c---ccccCcccceeEccccc
Q 008452          247 L---CISGAHKLKILTMETLS  264 (565)
Q Consensus       247 l---~i~~~~~L~~L~l~~c~  264 (565)
                      -   .+..+++|++|++++|.
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHHhcCCCCCEEECCCCC
Confidence            3   34458999999999997

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.58  E-value=6.2e-08  Score=94.64  Aligned_cols=139  Identities=14%  Similarity=0.064  Sum_probs=102.8

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcC
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHF  232 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~  232 (565)
                      ..++++|++...       ....+| .+..+++|++|+|++|.+...+.+..+++|++|+|++|.+++  +.. +.. ++
T Consensus        40 l~~L~~L~l~~n-------~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~--l~~-~~~-~~  107 (263)
T 1xeu_A           40 LSGVQNFNGDNS-------NIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN--LNG-IPS-AC  107 (263)
T ss_dssp             HTTCSEEECTTS-------CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC--CTT-CCC-SS
T ss_pred             cCcCcEEECcCC-------Ccccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC--cCc-ccc-Cc
Confidence            468899888762       223455 567789999999999999883338899999999999998832  122 222 89


Q ss_pred             CceeEeeecCCCcccccccCcccceeEcccccccccch-hh-cCccccEeeecCCCCCCCCceeeccccccccccccc
Q 008452          233 LEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF  308 (565)
Q Consensus       233 Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~  308 (565)
                      |+.|++++|.....-.+..+++|+.|++++|.  +..+ .+ .+++|+.|++++|.+...   ..+..+++|+.|++.
T Consensus       108 L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~--i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNK--LKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLT  180 (263)
T ss_dssp             CCEEECCSSCCSBSGGGTTCTTCCEEECTTSC--CCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEE
T ss_pred             ccEEEccCCccCCChhhcCcccccEEECCCCc--CCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCC
Confidence            99999999965332245568999999999985  3322 23 789999999999987322   457788888888775

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.58  E-value=4.9e-08  Score=92.64  Aligned_cols=111  Identities=14%  Similarity=0.119  Sum_probs=60.5

Q ss_pred             cccCcccccCCCccEEEecCccCCC-C--CcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--c
Q 008452          174 YTLPQTVFSANFLTHLRLAGCKLEQ-P--CYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--C  248 (565)
Q Consensus       174 ~~lp~~l~~~~~L~~L~L~~c~l~~-~--~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~  248 (565)
                      ..+|..+.  +.+++|.|++|.+.. +  ..+..+++|++|+|+++.++.- ....+.++++|++|+|++|......  .
T Consensus        24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  100 (220)
T 2v70_A           24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLENVQHKM  100 (220)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred             ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccCccCHhH
Confidence            34554432  356777777777765 2  2356777777777777766211 0123456677777777776542211  1


Q ss_pred             cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452          249 ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       249 i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      +..+++|+.|+++++. ..+..-.+ .+++|+.|++++|.+
T Consensus       101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  141 (220)
T 2v70_A          101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI  141 (220)
T ss_dssp             GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred             hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence            3345666666666663 11111122 455666666666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.55  E-value=9.1e-08  Score=89.69  Aligned_cols=139  Identities=19%  Similarity=0.140  Sum_probs=98.2

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcc-cccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQT-VFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      .++++|++...       ....+|.. +..+++|++|+|++|.+..  +..+..+++|++|+|+++.++.- ....+..+
T Consensus        28 ~~l~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l   99 (208)
T 2o6s_A           28 AQTTYLDLETN-------SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKL   99 (208)
T ss_dssp             TTCSEEECCSS-------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTC
T ss_pred             CCCcEEEcCCC-------ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCc
Confidence            47888888762       22345554 4578999999999998887  33467899999999999988321 12335789


Q ss_pred             cCCceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452          231 HFLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR  306 (565)
Q Consensus       231 p~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  306 (565)
                      ++|++|++++|......  .+..+++|+.|+++++. ..+..-.+ .+++|++|++++|.+        .+.+++|+.|+
T Consensus       100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~  171 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLS  171 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHH
T ss_pred             cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHH
Confidence            99999999998653221  24457999999999985 22222223 689999999999975        24567777665


Q ss_pred             cc
Q 008452          307 AF  308 (565)
Q Consensus       307 ~~  308 (565)
                      ..
T Consensus       172 ~~  173 (208)
T 2o6s_A          172 EW  173 (208)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.54  E-value=2e-07  Score=101.02  Aligned_cols=131  Identities=15%  Similarity=0.011  Sum_probs=93.3

Q ss_pred             CCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccc
Q 008452          184 NFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMET  262 (565)
Q Consensus       184 ~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~  262 (565)
                      .+|+.|+|++|.+.. +...  +++|++|+|++|.++  .+.   ..+++|+.|++++|.... +.. -..+|+.|++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCS
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCC
Confidence            489999999999887 4333  589999999999984  233   568999999999996533 322 124999999999


Q ss_pred             ccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccc
Q 008452          263 LSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       263 c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C  333 (565)
                      |.  +..+...+++|+.|++++|.+..  .+.   .+++|+.|++++..-..++. +.  ++|+.|+|++|
T Consensus       130 N~--l~~lp~~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          130 NQ--LTMLPELPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             SC--CSCCCCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS
T ss_pred             Cc--CCCCCCcCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC
Confidence            85  33333378899999999998732  222   46778877776433222333 33  78888888876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.52  E-value=1.3e-07  Score=89.66  Aligned_cols=112  Identities=17%  Similarity=0.172  Sum_probs=71.7

Q ss_pred             ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cc
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LC  248 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~  248 (565)
                      ...+|..+.  ++|+.|+|++|.+..  +..+..+++|++|+|+++.++.- ....+.++++|++|+|++|.....  -.
T Consensus        23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~   99 (220)
T 2v9t_B           23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKITELPKSL   99 (220)
T ss_dssp             CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred             cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence            345555443  678888888888776  34677888888888888877321 122356678888888888754221  11


Q ss_pred             cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452          249 ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       249 i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      +..+++|+.|+++++. ..+..-.+ .+++|++|++++|.+
T Consensus       100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B          100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence            3346778888887774 22211223 567777777777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.52  E-value=1.7e-07  Score=89.44  Aligned_cols=110  Identities=17%  Similarity=0.061  Sum_probs=72.5

Q ss_pred             ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--c
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--C  248 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~  248 (565)
                      ...+|..+.  ++|++|+|++|.+..  +..+..+++|++|+|+++.+..- ....+..+++|+.|+|++|......  .
T Consensus        31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  107 (229)
T 3e6j_A           31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTVLPSAV  107 (229)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCccChhH
Confidence            445565443  788999999988877  45577888899999988887211 1123567888888888888542211  1


Q ss_pred             cccCcccceeEcccccccccch--h-hcCccccEeeecCCCC
Q 008452          249 ISGAHKLKILTMETLSSELKGV--K-IVASSLQQLTLQFPFE  287 (565)
Q Consensus       249 i~~~~~L~~L~l~~c~~~l~~i--~-~~~p~L~~L~l~~~~~  287 (565)
                      +..+++|+.|+++++.  +..+  . ..+++|+.|++++|.+
T Consensus       108 ~~~l~~L~~L~Ls~N~--l~~lp~~~~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNK--LTELPRGIERLTHLTHLALDQNQL  147 (229)
T ss_dssp             TTTCTTCCEEECCSSC--CCSCCTTGGGCTTCSEEECCSSCC
T ss_pred             hCcchhhCeEeccCCc--ccccCcccccCCCCCEEECCCCcC
Confidence            3446778888887774  3333  1 2567777777777765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.51  E-value=1.6e-07  Score=95.75  Aligned_cols=195  Identities=10%  Similarity=-0.025  Sum_probs=126.0

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcc-cccCCCccEEEecCccCCC---CCcccCCCcCcEE-EcCCeeechHHHHHHHh
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQT-VFSANFLTHLRLAGCKLEQ---PCYAMCFLSLKKL-HLYGVYITEQMVQKLLH  228 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~---~~~~~~l~~Lk~L-~L~~~~~~~~~l~~ll~  228 (565)
                      +++++|+|..       .....+|.. +..+++|++|+|++|.+..   ...+.++++|+++ .+..+.+.. .....+.
T Consensus        30 ~~l~~L~Ls~-------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~  101 (350)
T 4ay9_X           30 RNAIELRFVL-------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQ  101 (350)
T ss_dssp             TTCSEEEEES-------CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBC
T ss_pred             CCCCEEEccC-------CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhh
Confidence            5899999987       344567765 4568999999999998754   3356788888764 444454411 0122357


Q ss_pred             cCcCCceeEeeecCCCcc--cccccCcccceeEcccccccccchh---h-c-CccccEeeecCCCCCCCCceeecccccc
Q 008452          229 ECHFLEDLNFFECLGLKL--LCISGAHKLKILTMETLSSELKGVK---I-V-ASSLQQLTLQFPFEGQGTPVVDIAVCPN  301 (565)
Q Consensus       229 ~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c~~~l~~i~---~-~-~p~L~~L~l~~~~~~~~~~~~~l~~~~~  301 (565)
                      .+++|+.|++.+|.....  .......++..|.+.++. .+..+.   + . ...++.|+++++.+.  ..+..+....+
T Consensus       102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~  178 (350)
T 4ay9_X          102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQ  178 (350)
T ss_dssp             CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCC--EECTTSSTTEE
T ss_pred             hccccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhcccccccc--CCChhhccccc
Confidence            799999999999965322  222224677778887765 333332   2 2 346889999998862  22223334556


Q ss_pred             cccccccc-cchHHH-HHHhcCCCCcceeecccccccccccc-cCCcccEEeecCCcChhhc
Q 008452          302 LKKFRAFN-LLGQEF-CTLISKFPLLEDLSLFACSSFERITI-SSNQLKHLSLVHCASLKAI  360 (565)
Q Consensus       302 L~~L~~~~-i~~~~l-~~l~~~~~~L~~L~L~~C~~~~~l~~-~~~~L~~L~L~~C~~L~~L  360 (565)
                      |+.|.+.+ .....+ .+.+.++++|+.|+|+++ .++.++. ...+|++|.+.++.+++.+
T Consensus       179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~l  239 (350)
T 4ay9_X          179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKL  239 (350)
T ss_dssp             EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCC
T ss_pred             hhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcC
Confidence            77666542 212222 235678899999999986 4555553 3578888888888777765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.50  E-value=2.4e-07  Score=101.62  Aligned_cols=121  Identities=17%  Similarity=0.107  Sum_probs=49.6

Q ss_pred             CccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc---ccccCcccceeE
Q 008452          185 FLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL---CISGAHKLKILT  259 (565)
Q Consensus       185 ~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---~i~~~~~L~~L~  259 (565)
                      ++++|+|++|.+..  +..+.++++|++|+|++|.++.- -...+.++++|++|+|++|.. +.+   .+.++++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEEE
Confidence            44555555554444  22344455555555555444100 001233445555555555432 211   123344555555


Q ss_pred             ccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccc
Q 008452          260 METLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRA  307 (565)
Q Consensus       260 l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~  307 (565)
                      +++|. ..+....+ .+++|++|++++|.+.....+..++.+++|+.|++
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  180 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  180 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence            55442 11111112 34455555555544322223333444444444443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.49  E-value=1.6e-07  Score=103.02  Aligned_cols=241  Identities=18%  Similarity=0.090  Sum_probs=135.3

Q ss_pred             ccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc----cccccCcccc
Q 008452          181 FSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL----LCISGAHKLK  256 (565)
Q Consensus       181 ~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~----l~i~~~~~L~  256 (565)
                      ..+.+|+.|++.+|.+.. .....++.|+.+.+..+......   -...+|.|+.|+++.+.....    .....+.+|+
T Consensus       325 ~~~~~L~~L~l~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~  400 (635)
T 4g8a_A          325 SYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLK  400 (635)
T ss_dssp             GSCCCCSEEEEESCEESS-CCCCBCTTCCEEEEESCCSCCBC---CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCC
T ss_pred             ccchhhhhhhcccccccC-cCcccchhhhhcccccccCCCCc---ccccccccccchhhccccccccccccchhhhhhhh
Confidence            345678888888887665 22345777888888777652110   123578888888887754221    1122357788


Q ss_pred             eeEccccc-ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccc-hHHHHHHhcCCCCcceeeccccc
Q 008452          257 ILTMETLS-SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLL-GQEFCTLISKFPLLEDLSLFACS  334 (565)
Q Consensus       257 ~L~l~~c~-~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~-~~~l~~l~~~~~~L~~L~L~~C~  334 (565)
                      .|++..+. .........+++|+.+++.++..........+..+++++.+++.... .......+..+++|+.|+|++|.
T Consensus       401 ~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~  480 (635)
T 4g8a_A          401 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  480 (635)
T ss_dssp             EEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             hhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence            88877764 11111223677888888877654333333445666677766655321 12223456677888888888875


Q ss_pred             cccccc----ccCCcccEEeecCCcChhhccccCCCccceeEecCCCCceecccccceeeecccccCCCCcccchHHHHH
Q 008452          335 SFERIT----ISSNQLKHLSLVHCASLKAINIDAPNLLSCNFWYNPFPIISINSQCSWNIHFNCQDDHDGGWFLNFKDFL  410 (565)
Q Consensus       335 ~~~~l~----~~~~~L~~L~L~~C~~L~~L~i~~p~L~~~~~~g~~~~~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l  410 (565)
                      ..+.+.    ...++|+.|+|++| +++.+.-.              .+....+|+.++|..|...+-.+.       .+
T Consensus       481 ~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~--------------~f~~l~~L~~L~Ls~N~l~~l~~~-------~~  538 (635)
T 4g8a_A          481 FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT--------------AFNSLSSLQVLNMSHNNFFSLDTF-------PY  538 (635)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTS-CCCEECTT--------------TTTTCTTCCEEECTTSCCCBCCCG-------GG
T ss_pred             cccccCchhhhhccccCEEECCCC-ccCCcChH--------------HHcCCCCCCEEECCCCcCCCCChh-------HH
Confidence            443321    12356666666665 23322100              112223555566654332223333       46


Q ss_pred             hhCCCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452          411 RISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR  452 (565)
Q Consensus       411 ~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~  452 (565)
                      +++++|++|+++.+.... ..|..|..    .|.+|+.|.+.
T Consensus       539 ~~l~~L~~L~Ls~N~l~~-~~~~~l~~----l~~~L~~L~L~  575 (635)
T 4g8a_A          539 KCLNSLQVLDYSLNHIMT-SKKQELQH----FPSSLAFLNLT  575 (635)
T ss_dssp             TTCTTCCEEECTTSCCCB-CCSSCTTC----CCTTCCEEECT
T ss_pred             hCCCCCCEEECCCCcCCC-CCHHHHHh----hhCcCCEEEee
Confidence            778889988888777441 33555554    13457777764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.49  E-value=1.1e-07  Score=86.57  Aligned_cols=104  Identities=15%  Similarity=-0.040  Sum_probs=62.3

Q ss_pred             cccCCCccEEEecCccCCCCCcccCC-CcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc---cccCccc
Q 008452          180 VFSANFLTHLRLAGCKLEQPCYAMCF-LSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC---ISGAHKL  255 (565)
Q Consensus       180 l~~~~~L~~L~L~~c~l~~~~~~~~l-~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~---i~~~~~L  255 (565)
                      ..++.+|++|.+++|.+...+.+..+ ++|+.|+|++|.+++-   ..+..+++|+.|++++|... .+.   +..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence            34566788888888877663333333 4788888888777321   23556777777777777542 221   1335677


Q ss_pred             ceeEccccc-ccccch-hh-cCccccEeeecCCCC
Q 008452          256 KILTMETLS-SELKGV-KI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       256 ~~L~l~~c~-~~l~~i-~~-~~p~L~~L~l~~~~~  287 (565)
                      +.|++++|. ..+..+ .+ .+++|+.|++++|.+
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC
Confidence            777777664 222221 12 566777777777664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.48  E-value=1.7e-07  Score=88.86  Aligned_cols=144  Identities=14%  Similarity=0.065  Sum_probs=88.0

Q ss_pred             cEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccceeEcccc
Q 008452          187 THLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLKILTMETL  263 (565)
Q Consensus       187 ~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c  263 (565)
                      +.++++++.+.. |..  -.+.+++|+|+++.++.-.....+..+++|+.|+|++|.....  -.+..+++|+.|+++++
T Consensus        14 ~~l~~s~n~l~~iP~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            577777777665 322  2345678888887773221112356678888888887754221  12445678888888877


Q ss_pred             c-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHH-HHHhcCCCCcceeecccc
Q 008452          264 S-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEF-CTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       264 ~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l-~~l~~~~~~L~~L~L~~C  333 (565)
                      . ..+..-.+ .+++|++|++++|.+ ....+..+..+++|+.|++.+..-..+ +..+..+++|+.|+|.++
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCC-CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcC-CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            4 22222223 577888888888776 333345567777788777664322222 345667778888888774

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.46  E-value=5.5e-09  Score=97.44  Aligned_cols=113  Identities=19%  Similarity=0.116  Sum_probs=75.7

Q ss_pred             ccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccC
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGA  252 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~  252 (565)
                      ...+|..+..+++|++|+|++|.+...+.+..+++|++|+|++|.++  .+...+..+|+|+.|++++|.....-.+..+
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l  114 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKL  114 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence            34455567778888888888887777336777888888888888874  2344556678888888888854331133346


Q ss_pred             cccceeEccccc-ccccch-hh-cCccccEeeecCCCC
Q 008452          253 HKLKILTMETLS-SELKGV-KI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       253 ~~L~~L~l~~c~-~~l~~i-~~-~~p~L~~L~l~~~~~  287 (565)
                      ++|+.|++++|. ..+..+ .+ .+++|++|++++|.+
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            788888888774 222221 22 677788888877764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.46  E-value=8.3e-08  Score=87.53  Aligned_cols=132  Identities=15%  Similarity=0.044  Sum_probs=85.2

Q ss_pred             CcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccccc-ccccchh-hcCccc
Q 008452          200 CYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS-SELKGVK-IVASSL  277 (565)
Q Consensus       200 ~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~-~~l~~i~-~~~p~L  277 (565)
                      +.+..+++|++|+|+++.++.  +..+...+|+|+.|++++|.....-.+..+++|+.|++++|. ..+..-. ..+++|
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             HhcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            456678999999999998842  233445566999999999965332245567899999999985 2222111 378999


Q ss_pred             cEeeecCCCCCCCCceeecccccccccccccccchHHH----HHHhcCCCCcceeecccc
Q 008452          278 QQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEF----CTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       278 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l----~~l~~~~~~L~~L~L~~C  333 (565)
                      ++|++++|.+...+....++.+++|+.|++.+..-..+    ...+..+++|+.|+++.+
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            99999999863222212556667777666653221111    223566677777777664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.46  E-value=2e-07  Score=88.44  Aligned_cols=126  Identities=18%  Similarity=0.166  Sum_probs=93.2

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCc-ccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQ-TVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      .++++|++...       ....+|. .+..+++|++|+|++|.+..  +..+.++++|++|+|+++.++. ....++.++
T Consensus        32 ~~l~~L~l~~n-------~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l  103 (220)
T 2v9t_B           32 ETITEIRLEQN-------TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGL  103 (220)
T ss_dssp             TTCCEEECCSS-------CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTC
T ss_pred             cCCCEEECCCC-------cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCC
Confidence            47888888762       2334444 45668999999999998887  5678899999999999998831 112345779


Q ss_pred             cCCceeEeeecCCCcc--cccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452          231 HFLEDLNFFECLGLKL--LCISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       231 p~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      ++|+.|+|++|.....  -.+..+++|+.|+++++. ..+..-.+ .+++|++|++++|.+
T Consensus       104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            9999999999965322  234557999999999985 22222223 578999999999885

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.38  E-value=2.2e-07  Score=95.16  Aligned_cols=110  Identities=16%  Similarity=0.095  Sum_probs=63.6

Q ss_pred             cccCcccccCCCccEEEecCccCCC--CCccc-CCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc---
Q 008452          174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAM-CFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL---  247 (565)
Q Consensus       174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~-~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---  247 (565)
                      ..+|..+.  +.++.|+|++|.+..  +..+. .+++|++|+|+++.++.-. ...+..+++|++|+|++|.. +.+   
T Consensus        31 ~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~  106 (361)
T 2xot_A           31 PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHL-HTLDEF  106 (361)
T ss_dssp             SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECTT
T ss_pred             CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcC-CcCCHH
Confidence            34554432  356777777777766  23344 6777777777777662110 12345677777777777753 222   


Q ss_pred             ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452          248 CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       248 ~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      .+..+++|+.|++++|. ..+..-.+ .+++|+.|++++|.+
T Consensus       107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l  148 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI  148 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence            23446777777777764 11212223 567777777777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.36  E-value=6.1e-07  Score=85.51  Aligned_cols=126  Identities=18%  Similarity=0.005  Sum_probs=92.5

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC-C-CcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ-P-CYAMCFLSLKKLHLYGVYITEQMVQKLLHECH  231 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~-~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp  231 (565)
                      .+++.|+|...      ......|..+..+++|++|+|++|.+.. + ..+..+++|++|+|++|.++.- ....+..++
T Consensus        40 ~~L~~L~Ls~n------~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~  112 (229)
T 3e6j_A           40 TNAQILYLHDN------QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLV  112 (229)
T ss_dssp             TTCSEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred             CCCCEEEcCCC------ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcch
Confidence            68899988762      1122235556678999999999999877 3 4468899999999999988321 123456799


Q ss_pred             CCceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452          232 FLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       232 ~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      +|+.|+|++|... .+  .+..+++|+.|+++++. ..+..-.+ .+++|+.|++++|.+
T Consensus       113 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          113 HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             TCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             hhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            9999999999653 33  23457999999999985 22222223 678999999999985

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.35  E-value=3.2e-07  Score=82.98  Aligned_cols=93  Identities=12%  Similarity=0.171  Sum_probs=64.2

Q ss_pred             CCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcccccccccchhh---cCccccEe
Q 008452          204 CFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKI---VASSLQQL  280 (565)
Q Consensus       204 ~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~---~~p~L~~L  280 (565)
                      .-..|+.|+|++|.+++.++..+ ++|++|++|+|++|..+++-.+.                  .+.-   .+++|++|
T Consensus        59 ~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~------------------~L~~~~~~~~~L~~L  119 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLE------------------RLSQLENLQKSMLEM  119 (176)
T ss_dssp             TCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHH------------------HHHTCHHHHHHCCEE
T ss_pred             CCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHH------------------HHHhcccccCCCCEE
Confidence            34579999999999988888775 78999999999999887653322                  1111   12345555


Q ss_pred             eecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccccccc
Q 008452          281 TLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFER  338 (565)
Q Consensus       281 ~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~  338 (565)
                      ++++|.                      ++++..+..+ ..+++|+.|+|++|+.++.
T Consensus       120 ~Ls~C~----------------------~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          120 EIISCG----------------------NVTDKGIIAL-HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             EEESCT----------------------TCCHHHHHHG-GGCTTCCEEEEESCTTCCC
T ss_pred             EcCCCC----------------------cCCHHHHHHH-hcCCCCCEEECCCCCCCCc
Confidence            555444                      4677777665 3578888888887766654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.34  E-value=9.3e-08  Score=98.27  Aligned_cols=36  Identities=14%  Similarity=0.080  Sum_probs=15.9

Q ss_pred             CcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeec
Q 008452          206 LSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFEC  241 (565)
Q Consensus       206 ~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c  241 (565)
                      ++|++|+|++|.+++..+..+...+++|++|+|++|
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n  136 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN  136 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence            344444444444444444444444444444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.31  E-value=3.7e-07  Score=93.42  Aligned_cols=144  Identities=15%  Similarity=0.065  Sum_probs=100.4

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccc--cCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhc
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVF--SANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHE  229 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~--~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~  229 (565)
                      ..++.|+|+.       .....++...+  .+++|++|+|++|.+..  +..+..+++|+.|+|++|.+..- ....+..
T Consensus        39 ~~l~~L~Ls~-------N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~  110 (361)
T 2xot_A           39 SYTALLDLSH-------NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSD  110 (361)
T ss_dssp             TTCSEEECCS-------SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTT
T ss_pred             CCCCEEECCC-------CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCC
Confidence            4678888776       23344555444  78999999999999887  44688999999999999988321 1234678


Q ss_pred             CcCCceeEeeecCCCcc--cccccCcccceeEcccccccccchh-------hcCccccEeeecCCCCCCCCceeeccccc
Q 008452          230 CHFLEDLNFFECLGLKL--LCISGAHKLKILTMETLSSELKGVK-------IVASSLQQLTLQFPFEGQGTPVVDIAVCP  300 (565)
Q Consensus       230 cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c~~~l~~i~-------~~~p~L~~L~l~~~~~~~~~~~~~l~~~~  300 (565)
                      +++|+.|+|++|.....  -.+..+++|+.|++++|.  +..+.       ..+++|+.|++++|.+ .......+..++
T Consensus       111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~  187 (361)
T 2xot_A          111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ--ISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLP  187 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CCSCCGGGTC----CTTCCEEECCSSCC-CCCCHHHHHHSC
T ss_pred             CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc--CCeeCHHHhcCcccCCcCCEEECCCCCC-CccCHHHhhhcc
Confidence            99999999999975321  235568999999999985  33332       2478999999999987 332333445555


Q ss_pred             cc--cccccc
Q 008452          301 NL--KKFRAF  308 (565)
Q Consensus       301 ~L--~~L~~~  308 (565)
                      .+  +.|++.
T Consensus       188 ~~~l~~l~l~  197 (361)
T 2xot_A          188 AWVKNGLYLH  197 (361)
T ss_dssp             HHHHTTEECC
T ss_pred             HhhcceEEec
Confidence            43  455544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.27  E-value=6.9e-06  Score=83.76  Aligned_cols=186  Identities=14%  Similarity=0.122  Sum_probs=107.4

Q ss_pred             CCccEEEEEEeccCCCCCchHHHHHHHH-HHhCCcEEEEEEeCCCC---cCcccccccCcccccCCCccEEEecCcc-CC
Q 008452          123 FSIQKLRIVIGVLDPEHLPPLLDKWIAL-AIENGVKELDFQILPDI---KDYVHTYTLPQTVFSANFLTHLRLAGCK-LE  197 (565)
Q Consensus       123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~-~~~~~l~~L~L~~~~~~---~~~~~~~~lp~~l~~~~~L~~L~L~~c~-l~  197 (565)
                      ..++.+.+....++.......++.++.. ...++|++|.+......   ..+.....++..+..+++|++|.|++|. +.
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            4577887775432101111344445432 23479999988542100   0001112355555678999999999973 33


Q ss_pred             CCCcccCCCcCcEEEcCCeeechHHHHHHHh-cCcCCceeEeeecCC-------Cccc----ccccCcccceeEccccc-
Q 008452          198 QPCYAMCFLSLKKLHLYGVYITEQMVQKLLH-ECHFLEDLNFFECLG-------LKLL----CISGAHKLKILTMETLS-  264 (565)
Q Consensus       198 ~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~-~cp~Le~L~L~~c~~-------l~~l----~i~~~~~L~~L~l~~c~-  264 (565)
                      .++  ...++|++|+|..+.+++..+..+.. .+|+|+.|+|..+..       +..+    ....+|+|+.|.+.+|. 
T Consensus       187 l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          187 IGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             CCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred             ecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence            222  24899999999999887777777653 799999999964311       1111    11235778888877764 


Q ss_pred             c--cccchhh--cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHH---hcCCCCcceeecccc
Q 008452          265 S--ELKGVKI--VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTL---ISKFPLLEDLSLFAC  333 (565)
Q Consensus       265 ~--~l~~i~~--~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l---~~~~~~L~~L~L~~C  333 (565)
                      .  ....+..  .+|+|++|+++.|.                       +++.....+   +.++++|+.|+|++|
T Consensus       265 ~~~~~~~la~a~~~~~L~~LdLs~n~-----------------------L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          265 QNVVVEMFLESDILPQLETMDISAGV-----------------------LTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             HHHHHHHHHHCSSGGGCSEEECCSSC-----------------------CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             chHHHHHHHhCccCCCCCEEECCCCC-----------------------CChHHHHHHHhhcccCCcceEEECCCC
Confidence            0  1111111  35566666665554                       333333332   245678888888776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.19  E-value=1.5e-06  Score=88.71  Aligned_cols=131  Identities=17%  Similarity=0.128  Sum_probs=78.5

Q ss_pred             HHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccccc---ccccchhh-cCccccEeeecCC--CCCCCC-c--
Q 008452          222 MVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS---SELKGVKI-VASSLQQLTLQFP--FEGQGT-P--  292 (565)
Q Consensus       222 ~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~---~~l~~i~~-~~p~L~~L~l~~~--~~~~~~-~--  292 (565)
                      .+..++..+|+|++|.|.+|..+....+. .++|++|.+..|.   ..+..+.. .+|+|++|+++.+  ..+... .  
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            46678899999999999988543322233 5899999999885   22333443 6899999998532  111111 1  


Q ss_pred             ---eeecccccccccccccc--cchHHHHHHh--cCCCCcceeeccccccccc-----ccc---cCCcccEEeecCC
Q 008452          293 ---VVDIAVCPNLKKFRAFN--LLGQEFCTLI--SKFPLLEDLSLFACSSFER-----ITI---SSNQLKHLSLVHC  354 (565)
Q Consensus       293 ---~~~l~~~~~L~~L~~~~--i~~~~l~~l~--~~~~~L~~L~L~~C~~~~~-----l~~---~~~~L~~L~L~~C  354 (565)
                         ......+++|+.|.+.+  +++.....++  ..+++|+.|+|+.+. ++.     +..   .+++|+.|+|++|
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence               11123567888777753  3433333333  356788888887652 222     221   2356677766655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.18  E-value=1.4e-06  Score=80.53  Aligned_cols=112  Identities=20%  Similarity=0.113  Sum_probs=75.8

Q ss_pred             ccccCcccccCCCccEEEecCccCCC-CC--cccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ-PC--YAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--  247 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~-~~--~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--  247 (565)
                      ...+|..+..  +|++|.|+++.+.. ++  .+..+++|++|+|+++.++.- ....+.++++|++|+|++|......  
T Consensus        20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~   96 (192)
T 1w8a_A           20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIKEISNK   96 (192)
T ss_dssp             CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred             cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcCCccCHH
Confidence            3456665543  88999999988877 33  377889999999999887321 1233567888999999888653221  


Q ss_pred             ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452          248 CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       248 ~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      .+..+++|+.|+++++. .++..-.+ .+++|++|++++|.+
T Consensus        97 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            24456888888888875 22222223 567888888888775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.16  E-value=1.9e-06  Score=93.55  Aligned_cols=100  Identities=15%  Similarity=0.130  Sum_probs=42.4

Q ss_pred             HhcCcCCceeEeeecCCCccc--ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCc-eeecccccc
Q 008452          227 LHECHFLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTP-VVDIAVCPN  301 (565)
Q Consensus       227 l~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~-~~~l~~~~~  301 (565)
                      +..+++|+.|+|++|... .+  .+..+++|+.|++++|. .++.  .+ .+++|+.|++++|.+ .... +..++.+++
T Consensus       459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l-~~~~~p~~l~~l~~  534 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRL-QQSAAIQPLVSCPR  534 (567)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCC-CSSSTTGGGGGCTT
T ss_pred             ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCC-CCCCCcHHHhcCCC
Confidence            344444444444444321 11  22234444445444443 1111  22 445555555555554 2211 344555555


Q ss_pred             cccccccccch----HHHHHHhcCCCCcceeec
Q 008452          302 LKKFRAFNLLG----QEFCTLISKFPLLEDLSL  330 (565)
Q Consensus       302 L~~L~~~~i~~----~~l~~l~~~~~~L~~L~L  330 (565)
                      |+.|++++..-    .....+...+|+|+.|++
T Consensus       535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            55555442211    112233445667776653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.16  E-value=7.3e-06  Score=82.46  Aligned_cols=196  Identities=13%  Similarity=0.033  Sum_probs=115.0

Q ss_pred             CCccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCC--c----Ccc-------cccccCcccc-c------
Q 008452          123 FSIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDI--K----DYV-------HTYTLPQTVF-S------  182 (565)
Q Consensus       123 ~~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~--~----~~~-------~~~~lp~~l~-~------  182 (565)
                      ..|+.+.+....     ....+ +++... .++++.|+|+...-.  .    ...       ..-.+|...| .      
T Consensus        25 ~~l~~L~l~g~i-----~~~~~-~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~   97 (329)
T 3sb4_A           25 NSITHLTLTGKL-----NAEDF-RHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVT   97 (329)
T ss_dssp             HHCSEEEEEEEE-----CHHHH-HHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEE
T ss_pred             CceeEEEEeccc-----cHHHH-HHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccc
Confidence            357778887653     12222 233321 468999999753100  0    000       0013444433 4      


Q ss_pred             --CCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeee---chHHHHHHHhcCcCCceeEeee---------------
Q 008452          183 --ANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI---TEQMVQKLLHECHFLEDLNFFE---------------  240 (565)
Q Consensus       183 --~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~---~~~~l~~ll~~cp~Le~L~L~~---------------  240 (565)
                        |++|++|.|.. .+..  ...|.+|++|++|+|..+.+   .+..    +.+|..+..+.+..               
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a----F~~~~~l~~l~~~~~~~~~~~~~i~~~~f  172 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEA----LADSVTAIFIPLGSSDAYRFKNRWEHFAF  172 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTS----SCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred             cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhh----hcCCCceEEecCcchhhhhcccccccccc
Confidence              79999999998 6655  56688999999999988753   2221    23344444443222               


Q ss_pred             --cCCCc--------------------------cccc-------------ccCcccceeEccccc-ccccchhh-cCccc
Q 008452          241 --CLGLK--------------------------LLCI-------------SGAHKLKILTMETLS-SELKGVKI-VASSL  277 (565)
Q Consensus       241 --c~~l~--------------------------~l~i-------------~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L  277 (565)
                        |..++                          .+.+             ..|++|+.|++..+. ..+..-.+ +|++|
T Consensus       173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L  252 (329)
T 3sb4_A          173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL  252 (329)
T ss_dssp             EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred             ccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence              11111                          0000             027899999999873 23333345 78999


Q ss_pred             cEeeecCCCCCCCCceeecccccccc-cccccccchHHHHHHhcCCCCcceeeccc
Q 008452          278 QQLTLQFPFEGQGTPVVDIAVCPNLK-KFRAFNLLGQEFCTLISKFPLLEDLSLFA  332 (565)
Q Consensus       278 ~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~~~~i~~~~l~~l~~~~~~L~~L~L~~  332 (565)
                      +++.+.++-  ..-....|.+|++|+ .+.+.+--...-...+.+|++|+.|++..
T Consensus       253 ~~l~l~~ni--~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~  306 (329)
T 3sb4_A          253 LKIKLPHNL--KTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATG  306 (329)
T ss_dssp             CEEECCTTC--CEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECS
T ss_pred             CEEECCccc--ceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCC
Confidence            999998873  333344678899998 88876411111234577899999999864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.16  E-value=2.9e-06  Score=77.14  Aligned_cols=112  Identities=21%  Similarity=0.103  Sum_probs=70.5

Q ss_pred             ccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--c
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--C  248 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~  248 (565)
                      ...+|..+.  ++|++|.++++.+..  +..+..+++|++|+|+++.++.- ....+..+++|+.|++++|......  .
T Consensus        19 l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~   95 (177)
T 2o6r_A           19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGV   95 (177)
T ss_dssp             CSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHH
Confidence            344554433  588889998888776  33457788888888888877311 1123467888888888887543211  1


Q ss_pred             cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452          249 ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       249 i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      +..+++|+.|+++++. ..+..-.+ .+++|++|++++|.+
T Consensus        96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            3346778888887774 22221112 467777777777764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=1.2e-06  Score=88.24  Aligned_cols=170  Identities=15%  Similarity=0.084  Sum_probs=100.5

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCccccc-CCCccEEEecCccCCC----------------------CCcccC------
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFS-ANFLTHLRLAGCKLEQ----------------------PCYAMC------  204 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~-~~~L~~L~L~~c~l~~----------------------~~~~~~------  204 (565)
                      .++++|.+...-.      ...+ ..+.. +++|+.|+|+++.+..                      ...+.+      
T Consensus        25 ~~l~~L~l~g~i~------~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~   97 (329)
T 3sb4_A           25 NSITHLTLTGKLN------AEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVT   97 (329)
T ss_dssp             HHCSEEEEEEEEC------HHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEE
T ss_pred             CceeEEEEecccc------HHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccc
Confidence            4788999886311      1111 11222 6789999999987771                      123445      


Q ss_pred             --CCcCcEEEcCCeee---chHHHHHHHhcCcCCceeEeeecCC--CcccccccCcccceeEccc---------------
Q 008452          205 --FLSLKKLHLYGVYI---TEQMVQKLLHECHFLEDLNFFECLG--LKLLCISGAHKLKILTMET---------------  262 (565)
Q Consensus       205 --l~~Lk~L~L~~~~~---~~~~l~~ll~~cp~Le~L~L~~c~~--l~~l~i~~~~~L~~L~l~~---------------  262 (565)
                        |++|++|+|.. .+   .+.    .+.+|++|++|++..+..  +..-.+.+|.++..+....               
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~----aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f  172 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDA----AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF  172 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTT----TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred             cccCCCcEEECCc-cccchhHH----HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence              88899988877 43   332    356789999999887753  1111222233343333222               


Q ss_pred             --cccccc----------------------------------------chhhcCccccEeeecCCCCCCCCceeeccccc
Q 008452          263 --LSSELK----------------------------------------GVKIVASSLQQLTLQFPFEGQGTPVVDIAVCP  300 (565)
Q Consensus       263 --c~~~l~----------------------------------------~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~  300 (565)
                        |. .+.                                        .+.-.|++|++++++++.+ ..-....|.+|+
T Consensus       173 ~~~~-~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i-~~I~~~aF~~~~  250 (329)
T 3sb4_A          173 IEGE-PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA-TTIPDFTFAQKK  250 (329)
T ss_dssp             EESC-CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC-CEECTTTTTTCT
T ss_pred             cccc-ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc-ceecHhhhhCCC
Confidence              10 000                                        0011389999999998765 333344688999


Q ss_pred             ccccccccccchHHHHHHhcCCCCcc-eeecccccccccc
Q 008452          301 NLKKFRAFNLLGQEFCTLISKFPLLE-DLSLFACSSFERI  339 (565)
Q Consensus       301 ~L~~L~~~~i~~~~l~~l~~~~~~L~-~L~L~~C~~~~~l  339 (565)
                      +|+.|.+.+.-...-...+.+|++|+ .|+|..  .+..|
T Consensus       251 ~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I  288 (329)
T 3sb4_A          251 YLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAI  288 (329)
T ss_dssp             TCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEE
T ss_pred             CCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEE
Confidence            99988876421112233577899999 999976  44444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.14  E-value=1e-07  Score=88.63  Aligned_cols=102  Identities=16%  Similarity=0.011  Sum_probs=67.1

Q ss_pred             cccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc--cccCcccceeEcccccccccch-hh-cCcc
Q 008452          201 YAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC--ISGAHKLKILTMETLSSELKGV-KI-VASS  276 (565)
Q Consensus       201 ~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~--i~~~~~L~~L~l~~c~~~l~~i-~~-~~p~  276 (565)
                      .+..+++|++|+|+++.+.+  +. .+..+++|+.|++++|... .+.  +..+++|+.|++++|.  +..+ .+ .+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~--l~~l~~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ--IASLSGIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEE--CCCHHHHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCc--CCcCCccccCCC
Confidence            67789999999999998843  33 4667899999999998542 221  1225788888888884  3222 23 6778


Q ss_pred             ccEeeecCCCCCCCCceeeccccccccccccc
Q 008452          277 LQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF  308 (565)
Q Consensus       277 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~  308 (565)
                      |+.|++++|.+...+....+..+++|+.|++.
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence            88888888775211111245556666655554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.08  E-value=4.8e-06  Score=77.02  Aligned_cols=111  Identities=17%  Similarity=0.108  Sum_probs=61.9

Q ss_pred             cccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccc
Q 008452          174 YTLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCIS  250 (565)
Q Consensus       174 ~~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~  250 (565)
                      ..+|..+.  ++|++|.|+++.+.. +..+..+++|++|+|+++.++.- ....+.++++|++|+|++|.....  -.+.
T Consensus        23 ~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~   99 (193)
T 2wfh_A           23 KVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLRCIPPRTFD   99 (193)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred             CcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCccCEeCHHHhC
Confidence            34454432  467777777777666 55666777777777777766211 112245667777777777654221  1233


Q ss_pred             cCcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452          251 GAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       251 ~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      .+++|+.|+++++. ..+..-.+ .+++|+.|++++|.+
T Consensus       100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            45666667766663 11111112 456666666666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.07  E-value=6.1e-07  Score=92.13  Aligned_cols=161  Identities=17%  Similarity=0.204  Sum_probs=99.2

Q ss_pred             HHHHhCCcEEEEEEeCCCCcCcccccccCccccc-CCCccEEEecCccCCC---CCcccCCCcCcEEEcCCeeechHHHH
Q 008452          149 ALAIENGVKELDFQILPDIKDYVHTYTLPQTVFS-ANFLTHLRLAGCKLEQ---PCYAMCFLSLKKLHLYGVYITEQMVQ  224 (565)
Q Consensus       149 ~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~-~~~L~~L~L~~c~l~~---~~~~~~l~~Lk~L~L~~~~~~~~~l~  224 (565)
                      ...+.+++++|+|....-.  ......+...+.. +++|++|+|++|.+..   ......+++|++|+|++|.+++....
T Consensus        67 ~~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           67 SAEVLSSLRQLNLAGVRMT--PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             HHHHHTTCCEEECTTSCCC--HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred             HHHHHhhCCEEEecCCCCC--HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence            3344568888887653110  0111223333332 3689999999998865   23334567899999999998766555


Q ss_pred             HHH----hcCcCCceeEeeecCCCc----cc--ccccCcccceeEccccc---ccccchh--h-cCccccEeeecCCCCC
Q 008452          225 KLL----HECHFLEDLNFFECLGLK----LL--CISGAHKLKILTMETLS---SELKGVK--I-VASSLQQLTLQFPFEG  288 (565)
Q Consensus       225 ~ll----~~cp~Le~L~L~~c~~l~----~l--~i~~~~~L~~L~l~~c~---~~l~~i~--~-~~p~L~~L~l~~~~~~  288 (565)
                      .+.    ..++.|++|+|++|..-.    .+  .+..+++|++|++++|.   .+...+.  + ..++|++|++++|.+ 
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i-  223 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-  223 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC-
T ss_pred             HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC-
Confidence            443    357889999999986411    11  11235788888888875   1122221  2 456788888877764 


Q ss_pred             CCCceeecccccccccccccccch---HHHHHHhcCCCCcceeeccccc
Q 008452          289 QGTPVVDIAVCPNLKKFRAFNLLG---QEFCTLISKFPLLEDLSLFACS  334 (565)
Q Consensus       289 ~~~~~~~l~~~~~L~~L~~~~i~~---~~l~~l~~~~~~L~~L~L~~C~  334 (565)
                                            ++   ..+...+...++|+.|+|++|.
T Consensus       224 ----------------------~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          224 ----------------------GDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             ----------------------CHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             ----------------------CHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence                                  33   2344455677888899888863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.07  E-value=5.1e-06  Score=90.10  Aligned_cols=100  Identities=18%  Similarity=0.063  Sum_probs=42.8

Q ss_pred             ccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccccc-
Q 008452          186 LTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS-  264 (565)
Q Consensus       186 L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~-  264 (565)
                      |+.|+|++|.+...+.+..+++|+.|+|++|.++  .+...+..+++|+.|+|++|...+--.+..+++|+.|++++|. 
T Consensus       443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL  520 (567)
T ss_dssp             CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred             ceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence            4445555544444222444445555555544442  1222334445555555554433211123334555555555543 


Q ss_pred             cccc-chhh-cCccccEeeecCCCC
Q 008452          265 SELK-GVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       265 ~~l~-~i~~-~~p~L~~L~l~~~~~  287 (565)
                      .++. .-.+ .+++|+.|++++|.+
T Consensus       521 ~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          521 QQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCcHHHhcCCCCCEEEecCCcC
Confidence            1111 1122 455555555555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.06  E-value=3.3e-06  Score=78.04  Aligned_cols=99  Identities=17%  Similarity=0.098  Sum_probs=68.5

Q ss_pred             cEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccceeEcccc
Q 008452          187 THLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLKILTMETL  263 (565)
Q Consensus       187 ~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c  263 (565)
                      ++++++++.+.. +...  .++|++|+|+++.++.-.....+..+++|++|+|++|...+.  -.+..+++|+.|+++++
T Consensus        11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            789999988876 3322  349999999999883221112467889999999999865332  13455788999999888


Q ss_pred             c-ccccchhh-cCccccEeeecCCCC
Q 008452          264 S-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       264 ~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      . .++..-.+ .+++|++|++++|.+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l  114 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcC
Confidence            5 22222223 578888888888875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.99  E-value=1.1e-05  Score=74.45  Aligned_cols=97  Identities=21%  Similarity=0.084  Sum_probs=69.3

Q ss_pred             cEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccceeEcccc
Q 008452          187 THLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLKILTMETL  263 (565)
Q Consensus       187 ~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~c  263 (565)
                      +.++++++.+.. +..  -.++|++|+|+++.++  .+...+..+++|+.|+|++|.....  -.+.++++|+.|+++++
T Consensus        13 ~~l~~~~~~l~~ip~~--~~~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG--IPRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSC--CCTTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCC--CCCCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            678888888876 332  2479999999999884  2224567899999999999865322  12456788999999988


Q ss_pred             c-ccccchhh-cCccccEeeecCCCC
Q 008452          264 S-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       264 ~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      . ..+..-.+ .+++|+.|++++|.+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l  114 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDI  114 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCC
Confidence            5 22222223 678888888888875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.88  E-value=1.9e-05  Score=71.55  Aligned_cols=101  Identities=17%  Similarity=0.069  Sum_probs=67.2

Q ss_pred             CccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCcccceeEccc
Q 008452          185 FLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAHKLKILTMET  262 (565)
Q Consensus       185 ~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~  262 (565)
                      +.+.++++++.+...+ ....++|++|+|+++.+.. .....+..+++|++|++++|......  .+..+++|+.|++++
T Consensus         8 ~~~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVP-TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             ETTEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCccCC-CCCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4578888888877622 2235799999999998832 11233567899999999988643211  134578888888888


Q ss_pred             cc-ccccchhh-cCccccEeeecCCCC
Q 008452          263 LS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       263 c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      +. ..+..-.+ .+++|++|++++|.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l  112 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQL  112 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcc
Confidence            74 22222122 567888888888775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.79  E-value=4e-05  Score=79.32  Aligned_cols=137  Identities=15%  Similarity=0.130  Sum_probs=61.7

Q ss_pred             CccEEEecCccCCC--CCcccCCCcCcEEEcCCeee---chHHHHHHHhcCcCCceeEeeecCCCccc---ccccCcccc
Q 008452          185 FLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI---TEQMVQKLLHECHFLEDLNFFECLGLKLL---CISGAHKLK  256 (565)
Q Consensus       185 ~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~---~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---~i~~~~~L~  256 (565)
                      +|+++.|.+ .+..  ...+.+|++|++++|..+.+   .+..+     .|..|+.+.|...  ++.+   .+.+|++|+
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~  229 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT--LKEIGSQAFLKTSQLK  229 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT--CCEECTTTTTTCTTCC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc--hheehhhHhhCCCCCC
Confidence            466666554 2222  34455666666666665443   22222     1456666666422  2222   233456666


Q ss_pred             eeEcccccccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccch------HHHHHHhcCCCCcceeec
Q 008452          257 ILTMETLSSELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLG------QEFCTLISKFPLLEDLSL  330 (565)
Q Consensus       257 ~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~------~~l~~l~~~~~~L~~L~L  330 (565)
                      .+.+...-..+..-.+...+|+++.+..+.  ..-....+..|++|+.+.+.....      ..-...+.+|++|+.+.|
T Consensus       230 ~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i--~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          230 TIEIPENVSTIGQEAFRESGITTVKLPNGV--TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             CEECCTTCCEECTTTTTTCCCSEEEEETTC--CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred             EEecCCCccCccccccccCCccEEEeCCCc--cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence            666654211122222322456666653322  111122345566666555432100      011223456666666666


Q ss_pred             c
Q 008452          331 F  331 (565)
Q Consensus       331 ~  331 (565)
                      .
T Consensus       308 ~  308 (401)
T 4fdw_A          308 P  308 (401)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.77  E-value=1.4e-05  Score=89.40  Aligned_cols=106  Identities=14%  Similarity=0.090  Sum_probs=61.5

Q ss_pred             CcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--ccccCc
Q 008452          177 PQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CISGAH  253 (565)
Q Consensus       177 p~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i~~~~  253 (565)
                      |..+..+++|+.|+|++|.+.. +.....+++|++|+|++|.++  .+...+..+++|+.|+|++|... .+  .+..++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            4445556677777777776665 445556777777777777664  23333566777777777777542 22  233456


Q ss_pred             ccceeEcccccccccch--hh-cCccccEeeecCCCC
Q 008452          254 KLKILTMETLSSELKGV--KI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       254 ~L~~L~l~~c~~~l~~i--~~-~~p~L~~L~l~~~~~  287 (565)
                      +|+.|++++|.  +..+  .+ .+++|+.|++++|.+
T Consensus       294 ~L~~L~L~~N~--l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          294 QLKYFYFFDNM--VTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             TCSEEECCSSC--CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CCCEEECCCCC--CCccChhhhcCCCccEEeCCCCcc
Confidence            67777777663  2222  13 566677777776665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.76  E-value=1.3e-05  Score=89.71  Aligned_cols=142  Identities=12%  Similarity=0.032  Sum_probs=75.0

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecC-----ccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHH
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAG-----CKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLL  227 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-----c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll  227 (565)
                      +.++.|+|...       .....+..+.....|..+.+.+     +.+.. +..+..+++|+.|+|+++.+.  .+..-+
T Consensus       173 ~~~~~l~L~~n-------~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~  243 (727)
T 4b8c_D          173 PLTPKIELFAN-------GKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF--NISANI  243 (727)
T ss_dssp             --------------------------------------------------------CCCCCCEEECTTSCCS--CCCGGG
T ss_pred             CccceEEeeCC-------CCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC--CCChhh
Confidence            46778877552       2223444444444444444333     32222 456778899999999999883  122224


Q ss_pred             hcCcCCceeEeeecCCCccc--ccccCcccceeEcccccccccch--hh-cCccccEeeecCCCCCCCCceeeccccccc
Q 008452          228 HECHFLEDLNFFECLGLKLL--CISGAHKLKILTMETLSSELKGV--KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNL  302 (565)
Q Consensus       228 ~~cp~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~~~l~~i--~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L  302 (565)
                      ..+++|++|+|++|... .+  .+..+++|+.|++++|.  +..+  .+ .+++|++|++++|.+.  ..+..++.+++|
T Consensus       244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~--l~~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L  318 (727)
T 4b8c_D          244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR--LTSLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNL  318 (727)
T ss_dssp             GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC--CSSCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTC
T ss_pred             cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc--CCccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCc
Confidence            47999999999999653 33  34568999999999985  3333  23 7889999999999873  445568899999


Q ss_pred             ccccccc
Q 008452          303 KKFRAFN  309 (565)
Q Consensus       303 ~~L~~~~  309 (565)
                      +.|++.+
T Consensus       319 ~~L~L~~  325 (727)
T 4b8c_D          319 QFLGVEG  325 (727)
T ss_dssp             CCEECTT
T ss_pred             cEEeCCC
Confidence            9888874

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.75  E-value=6.7e-06  Score=79.45  Aligned_cols=35  Identities=20%  Similarity=0.402  Sum_probs=32.8

Q ss_pred             cCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhh
Q 008452           32 RISDLPTFIIHHIMSFLPAKEAARASILSKRWEKF   66 (565)
Q Consensus        32 ~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~l   66 (565)
                      .|+.||++|+.+|||||+.+|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999964

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.75  E-value=1.2e-05  Score=78.52  Aligned_cols=36  Identities=22%  Similarity=0.600  Sum_probs=34.0

Q ss_pred             CcCCCCchHHHHHHHcCCChHHHH-HHhhcchhhhhh
Q 008452           31 DRISDLPTFIIHHIMSFLPAKEAA-RASILSKRWEKF   66 (565)
Q Consensus        31 D~is~LPd~vL~~ILs~L~~~d~v-r~s~lSkrWr~l   66 (565)
                      ..+..||||||.+||++||.++++ |++.|||+|+.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            468999999999999999999999 999999999986

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.62  E-value=3.8e-05  Score=69.31  Aligned_cols=36  Identities=14%  Similarity=0.013  Sum_probs=18.2

Q ss_pred             CcccceeEccccc-ccccchhh-cCccccEeeecCCCC
Q 008452          252 AHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       252 ~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      +++|+.|+++++. ..+..-.+ .+++|++|++++|.+
T Consensus        77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            4555555555542 11111112 456777777777764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.60  E-value=5.6e-05  Score=68.46  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=18.3

Q ss_pred             CCccEEEecCccCCC--CCcccCCCcCcEEEcCCeee
Q 008452          184 NFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI  218 (565)
Q Consensus       184 ~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~  218 (565)
                      ++|+.|+|++|.+..  +..+..+++|++|+|++|.+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   69 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL   69 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC
Confidence            455555555555544  23344555555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.46  E-value=0.00015  Score=65.34  Aligned_cols=88  Identities=13%  Similarity=0.076  Sum_probs=50.3

Q ss_pred             cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc--cc
Q 008452          174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL--CI  249 (565)
Q Consensus       174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l--~i  249 (565)
                      ..+|..+.  ++|++|+|++|.+..  +..+..+++|++|+|++|.++.- ....+..+++|+.|+|++|...+..  .+
T Consensus        22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~   98 (170)
T 3g39_A           22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKSIPRGAF   98 (170)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCEeCHHHh
Confidence            34554442  567777777776665  34456677777777777766211 1122455677777777766442211  23


Q ss_pred             ccCcccceeEccccc
Q 008452          250 SGAHKLKILTMETLS  264 (565)
Q Consensus       250 ~~~~~L~~L~l~~c~  264 (565)
                      ..+++|+.|+++++.
T Consensus        99 ~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           99 DNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCCCCCEEEeCCCC
Confidence            345677777777653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.46  E-value=0.00026  Score=73.18  Aligned_cols=146  Identities=12%  Similarity=0.130  Sum_probs=96.3

Q ss_pred             cccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeee--chHHHHHHHhcCcCCceeEeeecCCCccc---ccccCc
Q 008452          180 VFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYI--TEQMVQKLLHECHFLEDLNFFECLGLKLL---CISGAH  253 (565)
Q Consensus       180 l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~--~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---~i~~~~  253 (565)
                      +..|++|+.+.|.++.+.. +...-.+.+|+++.|.....  .+.    .+.+|++|+.++|..+  ++.+   .+.+ .
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~  248 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPEN--VSTIGQEAFRE-S  248 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCTT--CCEECTTTTTT-C
T ss_pred             hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhh----HhhCCCCCCEEecCCC--ccCcccccccc-C
Confidence            4468999999999887776 33333468999999975422  332    3568999999999763  3332   3334 6


Q ss_pred             ccceeEcccccccccchhh-cCccccEeeecCCCCCCC----CceeecccccccccccccccchHHHHHHhcCCCCccee
Q 008452          254 KLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQG----TPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDL  328 (565)
Q Consensus       254 ~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~----~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L  328 (565)
                      +|+.+.+...-..+..-.+ +|++|+.+.+.++.....    -....+..|++|+.+.+.+--...-...+.+|++|+.+
T Consensus       249 ~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l  328 (401)
T 4fdw_A          249 GITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQL  328 (401)
T ss_dssp             CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEE
T ss_pred             CccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEE
Confidence            8999998542222333345 899999999988764111    12335778999998887631111112346778888888


Q ss_pred             eccc
Q 008452          329 SLFA  332 (565)
Q Consensus       329 ~L~~  332 (565)
                      .|..
T Consensus       329 ~lp~  332 (401)
T 4fdw_A          329 TIPA  332 (401)
T ss_dssp             EECT
T ss_pred             EECc
Confidence            8854

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.43  E-value=0.00016  Score=66.20  Aligned_cols=106  Identities=13%  Similarity=0.120  Sum_probs=53.1

Q ss_pred             cCCCccEEEecCc-cCCC------CCcccCCCcCcEEEcCCeeechHHH---HHHHhcCcCCceeEeeecCCCcc----c
Q 008452          182 SANFLTHLRLAGC-KLEQ------PCYAMCFLSLKKLHLYGVYITEQMV---QKLLHECHFLEDLNFFECLGLKL----L  247 (565)
Q Consensus       182 ~~~~L~~L~L~~c-~l~~------~~~~~~l~~Lk~L~L~~~~~~~~~l---~~ll~~cp~Le~L~L~~c~~l~~----l  247 (565)
                      .+++|++|+|++| .+..      .......++|++|+|++|.+++.+.   ...+..++.|++|+|++|..-..    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            3455666666665 5543      1122334566666666666644433   33344556666666666643111    1


Q ss_pred             --ccccCcccceeEc--cccc---ccccchh---hcCccccEeeecCCCC
Q 008452          248 --CISGAHKLKILTM--ETLS---SELKGVK---IVASSLQQLTLQFPFE  287 (565)
Q Consensus       248 --~i~~~~~L~~L~l--~~c~---~~l~~i~---~~~p~L~~L~l~~~~~  287 (565)
                        .+...++|++|++  ++|.   .+...+.   ...++|++|++++|.+
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence              1222356666666  4443   1111121   1446677777766653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.39  E-value=0.0002  Score=64.71  Aligned_cols=98  Identities=15%  Similarity=0.051  Sum_probs=68.3

Q ss_pred             ccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc---cccCcccceeEcc
Q 008452          186 LTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC---ISGAHKLKILTME  261 (565)
Q Consensus       186 L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~---i~~~~~L~~L~l~  261 (565)
                      -+.++++++.+.. |...  .++|++|+|+++.+..- ....+..+++|++|+|++|.. +.+.   +..+++|+.|+++
T Consensus        14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECC
Confidence            4789999998877 4433  38999999999988321 123467789999999999854 3222   3457888889888


Q ss_pred             ccc-ccccchhh-cCccccEeeecCCCC
Q 008452          262 TLS-SELKGVKI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       262 ~c~-~~l~~i~~-~~p~L~~L~l~~~~~  287 (565)
                      ++. ..+..-.+ .+++|+.|++++|.+
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCc
Confidence            874 22222123 578888888888875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.39  E-value=4.4e-05  Score=79.95  Aligned_cols=39  Identities=26%  Similarity=0.398  Sum_probs=36.2

Q ss_pred             CCCcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhh
Q 008452           29 TMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFH   67 (565)
Q Consensus        29 ~~D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw   67 (565)
                      ..|.|+.||+||+.+||+||+.+|+++++.|||+|+++.
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~   49 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   49 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999998753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.29  E-value=0.00048  Score=62.89  Aligned_cols=109  Identities=16%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             ccCCCcCcEEEcCCe-eechHHHHH---HHhcCcCCceeEeeecCCCcc----c--ccccCcccceeEccccc---cccc
Q 008452          202 AMCFLSLKKLHLYGV-YITEQMVQK---LLHECHFLEDLNFFECLGLKL----L--CISGAHKLKILTMETLS---SELK  268 (565)
Q Consensus       202 ~~~l~~Lk~L~L~~~-~~~~~~l~~---ll~~cp~Le~L~L~~c~~l~~----l--~i~~~~~L~~L~l~~c~---~~l~  268 (565)
                      ....++|++|+|++| .+++.+...   .+..++.|++|+|++|..-..    +  .+...++|++|++++|.   .+..
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            345778888888888 776655443   345677788888877754111    1  01123566666666664   1111


Q ss_pred             chh--h-cCccccEeee--cCCCCCCCCceeecccccccccccccccchHH---HHHHhcCCCCcceeecccc
Q 008452          269 GVK--I-VASSLQQLTL--QFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQE---FCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       269 ~i~--~-~~p~L~~L~l--~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~---l~~l~~~~~~L~~L~L~~C  333 (565)
                      .+.  + ..++|++|++  ++|.                       ++++.   +...+...++|++|+|++|
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~-----------------------i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQP-----------------------LGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSC-----------------------CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCCCceEEEecCCCCC-----------------------CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            121  1 3345555555  4444                       33333   4455666678888888775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.18  E-value=0.00096  Score=68.63  Aligned_cols=53  Identities=8%  Similarity=0.110  Sum_probs=32.8

Q ss_pred             cCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCee-e-chHHHHHHHhcCcCCceeEee
Q 008452          182 SANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVY-I-TEQMVQKLLHECHFLEDLNFF  239 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~-~-~~~~l~~ll~~cp~Le~L~L~  239 (565)
                      .|.+|+++.|... +..  ...|.+|.+|++++|.... . ++.    .+.+|+.|+.+.+.
T Consensus        69 ~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           69 GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRC----TFSGCYALKSILLP  125 (394)
T ss_dssp             TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTT----TTTTCTTCCCCCCC
T ss_pred             CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccch----hhcccccchhhccc
Confidence            5788888888643 322  3456778888888885432 1 322    24567777776554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.13  E-value=0.00022  Score=74.29  Aligned_cols=38  Identities=29%  Similarity=0.417  Sum_probs=35.7

Q ss_pred             CCCcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhh
Q 008452           29 TMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKF   66 (565)
Q Consensus        29 ~~D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~l   66 (565)
                      ..|.++.||+|++.+||+||+.+|+++++.|||+|+++
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            56889999999999999999999999999999999863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.07  E-value=0.00014  Score=75.62  Aligned_cols=38  Identities=34%  Similarity=0.579  Sum_probs=35.4

Q ss_pred             CCCcCCCCchH----HHHHHHcCCChHHHHHHhhcchhhhhh
Q 008452           29 TMDRISDLPTF----IIHHIMSFLPAKEAARASILSKRWEKF   66 (565)
Q Consensus        29 ~~D~is~LPd~----vL~~ILs~L~~~d~vr~s~lSkrWr~l   66 (565)
                      ..|.|+.||+|    |+.+||+||+.+|+++++.|||+|+++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            46889999999    999999999999999999999999853

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.78  E-value=0.001  Score=66.96  Aligned_cols=69  Identities=17%  Similarity=0.028  Sum_probs=46.4

Q ss_pred             ccccCcccccCCCccEEEecC-ccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCC
Q 008452          173 TYTLPQTVFSANFLTHLRLAG-CKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLG  243 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~-c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~  243 (565)
                      ...+|. +..+++|++|+|++ |.+..  +..+.++++|+.|+|++|.+..- ....+.++++|+.|+|++|..
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcc
Confidence            445777 77777888888886 77766  34577788888888888877221 122345677777777777643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.48  E-value=0.0023  Score=64.29  Aligned_cols=98  Identities=16%  Similarity=0.054  Sum_probs=67.7

Q ss_pred             cEEEecCc-cCCC-CCcccCCCcCcEEEcCC-eeechHHHHHHHhcCcCCceeEeeecCCCccc---ccccCcccceeEc
Q 008452          187 THLRLAGC-KLEQ-PCYAMCFLSLKKLHLYG-VYITEQMVQKLLHECHFLEDLNFFECLGLKLL---CISGAHKLKILTM  260 (565)
Q Consensus       187 ~~L~L~~c-~l~~-~~~~~~l~~Lk~L~L~~-~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---~i~~~~~L~~L~l  260 (565)
                      ..+++++. .+.. |. +..+++|++|+|++ +.+..- ....+.++++|+.|+|++|.. +.+   .+..+++|+.|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCcc-ceeCHHHhcCCcCCCEEeC
Confidence            34677777 7777 55 88899999999996 877211 113367899999999999964 332   3455789999999


Q ss_pred             cccc-ccccchhhcCccccEeeecCCCC
Q 008452          261 ETLS-SELKGVKIVASSLQQLTLQFPFE  287 (565)
Q Consensus       261 ~~c~-~~l~~i~~~~p~L~~L~l~~~~~  287 (565)
                      +++. ..+..-.+...+|+.|++.+|.+
T Consensus        88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCccceeCHHHcccCCceEEEeeCCCc
Confidence            9884 22222123333488999888875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.92  E-value=0.003  Score=61.08  Aligned_cols=39  Identities=15%  Similarity=0.077  Sum_probs=17.5

Q ss_pred             CCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecC
Q 008452          204 CFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECL  242 (565)
Q Consensus       204 ~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~  242 (565)
                      ++++|++|+|++|.+ +-..+..++..+|+|+.|+|++|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~  207 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE  207 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence            344455555555544 212233334445555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.92  E-value=0.014  Score=59.71  Aligned_cols=145  Identities=11%  Similarity=0.075  Sum_probs=67.3

Q ss_pred             ccCCCccEEEecCccCC-CCCcccCCCcCcEEEcCCeee--chHHHHHHHhcCcCCceeEeeecCCCcccccccCcccce
Q 008452          181 FSANFLTHLRLAGCKLE-QPCYAMCFLSLKKLHLYGVYI--TEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKI  257 (565)
Q Consensus       181 ~~~~~L~~L~L~~c~l~-~~~~~~~l~~Lk~L~L~~~~~--~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~  257 (565)
                      +.+.+|+.+.+....-. ....+.++..|+.+.+.....  ...    ....|+.|+.+...... +.......|.+|+.
T Consensus       227 ~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~~~-i~~~~F~~~~~L~~  301 (394)
T 4fs7_A          227 LSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGSVI-VPEKTFYGCSSLTE  301 (394)
T ss_dssp             TTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECSSE-ECTTTTTTCTTCCE
T ss_pred             cccCCCceEEECCCceecccccccccccceeEEcCCCcceeecc----ccccccccceeccCcee-eccccccccccccc
Confidence            34556666666543111 123455566666666654322  111    13446666655544321 11222333566666


Q ss_pred             eEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccc
Q 008452          258 LTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFA  332 (565)
Q Consensus       258 L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~  332 (565)
                      +.+...-..+..-++ +|.+|+++.+..+.  ..-....+.+|.+|+.+.+..--...-...+.+|++|++++|..
T Consensus       302 i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v--~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          302 VKLLDSVKFIGEEAFESCTSLVSIDLPYLV--EEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             EEECTTCCEECTTTTTTCTTCCEECCCTTC--CEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred             cccccccceechhhhcCCCCCCEEEeCCcc--cEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence            665432111222233 56666666664332  11112245566677766553211011122466778888887754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.72  E-value=0.0071  Score=58.42  Aligned_cols=107  Identities=14%  Similarity=0.022  Sum_probs=59.7

Q ss_pred             CCCcCcE--EEcCCeee--chHHHHHHHhcCcCCceeEeeecCCCc--ccc--cccCcccceeEccccc-ccccchhh-c
Q 008452          204 CFLSLKK--LHLYGVYI--TEQMVQKLLHECHFLEDLNFFECLGLK--LLC--ISGAHKLKILTMETLS-SELKGVKI-V  273 (565)
Q Consensus       204 ~l~~Lk~--L~L~~~~~--~~~~l~~ll~~cp~Le~L~L~~c~~l~--~l~--i~~~~~L~~L~l~~c~-~~l~~i~~-~  273 (565)
                      ..+.|+.  +.+..+..  -...+..+..++|.|+.|+|++|....  .+.  +..+++|+.|+++++. .++..+.. .
T Consensus       139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~  218 (267)
T 3rw6_A          139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK  218 (267)
T ss_dssp             GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT
T ss_pred             CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc
Confidence            3444554  44454433  112233333568888888888886533  221  1247888888888875 22222221 1


Q ss_pred             CccccEeeecCCCCCCCC------ceeeccccccccccccccc
Q 008452          274 ASSLQQLTLQFPFEGQGT------PVVDIAVCPNLKKFRAFNL  310 (565)
Q Consensus       274 ~p~L~~L~l~~~~~~~~~------~~~~l~~~~~L~~L~~~~i  310 (565)
                      ..+|++|.+++|++....      ....+..+++|+.|+...+
T Consensus       219 ~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v  261 (267)
T 3rw6_A          219 GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL  261 (267)
T ss_dssp             TSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred             cCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence            117888888888862211      1123567788888776544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.08  E-value=0.019  Score=58.72  Aligned_cols=98  Identities=15%  Similarity=0.151  Sum_probs=52.5

Q ss_pred             cCcccceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceee
Q 008452          251 GAHKLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLS  329 (565)
Q Consensus       251 ~~~~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~  329 (565)
                      +|..|+.+.+......+..-.+ +|++|+.+.+....  ..-....+.+|.+|+.+.+..--...-...+.+|.+|+++.
T Consensus       263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i--~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRI--TELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             ecccccEEecccccceecCcccccccccccccCCCcc--cccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEE
Confidence            3677777777543212222233 67888888875433  11122346778888877764211111123466788888888


Q ss_pred             ccccccccccc----ccCCcccEEeec
Q 008452          330 LFACSSFERIT----ISSNQLKHLSLV  352 (565)
Q Consensus       330 L~~C~~~~~l~----~~~~~L~~L~L~  352 (565)
                      |-.  .+..|.    ..|.+|+.+.+.
T Consensus       341 ip~--sv~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          341 IPS--SVTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             ECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred             ECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence            853  233332    134555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.23  E-value=0.053  Score=55.39  Aligned_cols=125  Identities=14%  Similarity=0.153  Sum_probs=68.3

Q ss_pred             CcccCCCcCcEEEcCCeee--chHHHHHHHhcCcCCceeEeeecC-CCcccccccCcccceeEcccccccccchhh-cCc
Q 008452          200 CYAMCFLSLKKLHLYGVYI--TEQMVQKLLHECHFLEDLNFFECL-GLKLLCISGAHKLKILTMETLSSELKGVKI-VAS  275 (565)
Q Consensus       200 ~~~~~l~~Lk~L~L~~~~~--~~~~l~~ll~~cp~Le~L~L~~c~-~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~-~~p  275 (565)
                      ..+.+|.+|+++.+.....  +..    .+.+|+.|+.+.+...- .+..-.+.+|.+|+.+.+...-..+..-++ +|.
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCT
T ss_pred             ceeeecccccEEecccccceecCc----ccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCC
Confidence            4566777888887754432  222    24568888888775321 122223445788888888642112222234 678


Q ss_pred             cccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccc
Q 008452          276 SLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFA  332 (565)
Q Consensus       276 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~  332 (565)
                      +|+++.+..+.  ..-....+.+|.+|+.+.+.....  ....+..+.+|+.+.+..
T Consensus       335 ~L~~i~ip~sv--~~I~~~aF~~C~~L~~i~~~~~~~--~~~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          335 QLERIAIPSSV--TKIPESAFSNCTALNNIEYSGSRS--QWNAISTDSGLQNLPVAP  387 (394)
T ss_dssp             TCCEEEECTTC--CBCCGGGGTTCTTCCEEEESSCHH--HHHTCBCCCCC-------
T ss_pred             CCCEEEECccc--CEEhHhHhhCCCCCCEEEECCcee--ehhhhhccCCCCEEEeCC
Confidence            88888886543  222344677888888777653221  123456777888877753

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.27  E-value=0.036  Score=50.74  Aligned_cols=101  Identities=13%  Similarity=0.163  Sum_probs=57.0

Q ss_pred             CchHHHHHHHHHHh--CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC---CCcc---cCCCcCcEE
Q 008452          140 LPPLLDKWIALAIE--NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ---PCYA---MCFLSLKKL  211 (565)
Q Consensus       140 ~~~~i~~wi~~~~~--~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~---~~~~---~~l~~Lk~L  211 (565)
                      ....++.++..+..  +.+++|+|...... +......+-..+..-.+|+.|+|++|.+.+   ....   ..-..|++|
T Consensus        25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~i-gd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L  103 (197)
T 1pgv_A           25 NDTDVESCINRLREDDTDLKEVNINNMKRV-SKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVL  103 (197)
T ss_dssp             --CCHHHHHHHHHTTCSSCCEEECTTCCSS-CHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEE
T ss_pred             CCCCHHHHHHHHHhcCCCccEEECCCCCCC-CHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeE
Confidence            34567777776654  36778777531011 001112333344455678888888887765   1111   234678888


Q ss_pred             EcCCeeechHHHHHHH---hcCcCCceeEeeec
Q 008452          212 HLYGVYITEQMVQKLL---HECHFLEDLNFFEC  241 (565)
Q Consensus       212 ~L~~~~~~~~~l~~ll---~~cp~Le~L~L~~c  241 (565)
                      +|++|.+++.+...+.   ..-..|++|+|.++
T Consensus       104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            8888888666655543   34455777776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.69  E-value=0.074  Score=53.84  Aligned_cols=14  Identities=14%  Similarity=0.131  Sum_probs=8.7

Q ss_pred             HhcCCCCcceeecc
Q 008452          318 LISKFPLLEDLSLF  331 (565)
Q Consensus       318 l~~~~~~L~~L~L~  331 (565)
                      .+.+|.+|+++.|.
T Consensus       305 aF~~c~~L~~i~lp  318 (379)
T 4h09_A          305 VFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTTCTTCCEEECC
T ss_pred             hhcCCCCCCEEEcC
Confidence            34566677776664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.58  E-value=0.18  Score=46.05  Aligned_cols=106  Identities=13%  Similarity=0.073  Sum_probs=64.3

Q ss_pred             ccCCCccEEEecCc-cCCC------CCcccCCCcCcEEEcCCeeechHH---HHHHHhcCcCCceeEeeecCCCcc----
Q 008452          181 FSANFLTHLRLAGC-KLEQ------PCYAMCFLSLKKLHLYGVYITEQM---VQKLLHECHFLEDLNFFECLGLKL----  246 (565)
Q Consensus       181 ~~~~~L~~L~L~~c-~l~~------~~~~~~l~~Lk~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~c~~l~~----  246 (565)
                      .+-++|++|+|+++ .+.+      -.....-..|++|+|++|.+++.+   +...+.....|++|+|+.|..-..    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34578999999885 6654      111234578999999999996554   555566788899999988865111    


Q ss_pred             c--ccccCcccceeEcccccc------cccchh--h-cCccccEeeecCCC
Q 008452          247 L--CISGAHKLKILTMETLSS------ELKGVK--I-VASSLQQLTLQFPF  286 (565)
Q Consensus       247 l--~i~~~~~L~~L~l~~c~~------~l~~i~--~-~~p~L~~L~l~~~~  286 (565)
                      +  .+..-.+|+.|+++++..      +-..+.  + .-++|+.|+++.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            1  011125688888875421      111121  1 34567777775544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.52  E-value=0.15  Score=51.63  Aligned_cols=144  Identities=11%  Similarity=0.020  Sum_probs=78.9

Q ss_pred             cCCCccEEEecCccC-CCCCcccCCCcCcEEEcCCeee--chHHHHHHHhcCcCCceeEeeecC-CCcccccccCcccce
Q 008452          182 SANFLTHLRLAGCKL-EQPCYAMCFLSLKKLHLYGVYI--TEQMVQKLLHECHFLEDLNFFECL-GLKLLCISGAHKLKI  257 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l-~~~~~~~~l~~Lk~L~L~~~~~--~~~~l~~ll~~cp~Le~L~L~~c~-~l~~l~i~~~~~L~~  257 (565)
                      .+.++..+.+..... .....+..+.+|+.+.+.....  .+.    ...+|..|+.+.+...- .+..-....|.+|+.
T Consensus       192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~  267 (379)
T 4h09_A          192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPKNVTSIGSFLLQNCTALKT  267 (379)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECTTCCEECTTTTTTCTTCCE
T ss_pred             ccccccccccccceeEEeecccccccccceeeeccceeEEccc----cccCCccceEEEcCCCccEeCccccceeehhcc
Confidence            455666666555311 1134556677788877754422  222    24568888888875431 122223444777888


Q ss_pred             eEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccc-cchHHHHHHhcCCCCcceeecc
Q 008452          258 LTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFN-LLGQEFCTLISKFPLLEDLSLF  331 (565)
Q Consensus       258 L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~-i~~~~l~~l~~~~~~L~~L~L~  331 (565)
                      +.+......+..-.+ +|++|+.+.+.++.+ ..-....+.+|.+|+.+.+.. ++. .-...+.+|.+|+++.|-
T Consensus       268 i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i-~~I~~~aF~~c~~L~~i~lp~~l~~-I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          268 LNFYAKVKTVPYLLCSGCSNLTKVVMDNSAI-ETLEPRVFMDCVKLSSVTLPTALKT-IQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEECCCCSEECTTTTTTCTTCCEEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCCCCCC
T ss_pred             ccccccceecccccccccccccccccccccc-ceehhhhhcCCCCCCEEEcCccccE-EHHHHhhCCCCCCEEEEC
Confidence            877543212222233 678888888866543 111223567788888777642 111 111235677777777774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	565
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	3e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.001
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.002

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 30 MDRISDLPTFIIHHIMSFLPAKEAARASILSKRW 63
           D IS LP  +  +++SFL  K+  +A+   + W
Sbjct: 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYW 49

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 30 MDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFHSSFPIL 73
           D I+ LP  I   I ++L  ++   +  +S+ W K       L
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)

Query: 30 MDRISDLPTF----IIHHIMSFLPAKEAARASILSKRW 63
           D I+ LP      I  +I+S+L AK    A ++ K W
Sbjct: 8  RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEW 45

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 34 SDLPTFIIHHIMSFLPAKEAARASILSKRW 63
            LP  ++  I S L   E  + S + KRW
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRW 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	565
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.13
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.11
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.09
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.07
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.05
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.97
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.96
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.95
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.71
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.71
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.66
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.59
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.59
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.52
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.45
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.28
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.25
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.23
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.21
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.15
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.07
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.04
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.88
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.86
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.85
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.21
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.54

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.4e-15  Score=148.84  Aligned_cols=174  Identities=19%  Similarity=0.251  Sum_probs=121.9

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeee-chHHHHHHHhcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYI-TEQMVQKLLHEC  230 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~c  230 (565)
                      .++++|+++++  .   .....++..+..|++|++|.|++|.+..  ...+..+++|++|+|++|.. ++.++..++.+|
T Consensus        46 ~~L~~LdLs~~--~---i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          46 FRVQHMDLSNS--V---IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             BCCCEEECTTC--E---ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             CCCCEEECCCC--c---cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence            37888887652  1   1223344445678999999999998765  44556789999999999754 888888888899


Q ss_pred             cCCceeEeeecCCCccccc-----ccCcccceeEccccc-----ccccchhhcCccccEeeecCCCCCCCCceeeccccc
Q 008452          231 HFLEDLNFFECLGLKLLCI-----SGAHKLKILTMETLS-----SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCP  300 (565)
Q Consensus       231 p~Le~L~L~~c~~l~~l~i-----~~~~~L~~L~l~~c~-----~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~  300 (565)
                      |+|++|+|++|..++.-.+     ..+++|+.|++++|.     .++..+...||+|++|++++|...++.....++.++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            9999999999987654221     125889999998874     123334447899999999887643444555667777


Q ss_pred             cccccccc---ccchHHHHHHhcCCCCcceeecccc
Q 008452          301 NLKKFRAF---NLLGQEFCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       301 ~L~~L~~~---~i~~~~l~~l~~~~~~L~~L~L~~C  333 (565)
                      +|++|++.   .+++..+.. ++++|+|+.|++.+|
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            77777765   345555444 456777777777776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.8e-14  Score=138.42  Aligned_cols=170  Identities=23%  Similarity=0.294  Sum_probs=104.2

Q ss_pred             CCCccEEEecCccCCC---CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc----cccCccc
Q 008452          183 ANFLTHLRLAGCKLEQ---PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC----ISGAHKL  255 (565)
Q Consensus       183 ~~~L~~L~L~~c~l~~---~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~----i~~~~~L  255 (565)
                      ..+|++|+|++|.+..   ...+..|++|++|+|+++.+++..+.. +..+|+|++|++++|..++...    ..+|++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            3467777777766544   334456677777777777665555544 3456677777777666655321    1235666


Q ss_pred             ceeEccccc----ccccc-hhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeec
Q 008452          256 KILTMETLS----SELKG-VKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSL  330 (565)
Q Consensus       256 ~~L~l~~c~----~~l~~-i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L  330 (565)
                      ++|++++|.    .++.. +...+++|+.|+++++..                     .+++..+..++.++|+|++|++
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------------~i~~~~l~~l~~~~~~L~~L~L  182 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK---------------------NLQKSDLSTLVRRCPNLVHLDL  182 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG---------------------GSCHHHHHHHHHHCTTCSEEEC
T ss_pred             cccccccccccccccchhhhcccccccchhhhccccc---------------------cccccccccccccccccccccc
Confidence            666666664    01111 112345666666655431                     4677888888889999999999


Q ss_pred             cccccccccc----ccCCcccEEeecCCcChhhcc----ccCCCccceeEec
Q 008452          331 FACSSFERIT----ISSNQLKHLSLVHCASLKAIN----IDAPNLLSCNFWY  374 (565)
Q Consensus       331 ~~C~~~~~l~----~~~~~L~~L~L~~C~~L~~L~----i~~p~L~~~~~~g  374 (565)
                      ++|..++.-.    ..+++|++|++++|.++..-.    -+.|+|+.++++|
T Consensus       183 ~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             ccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence            9997665322    246889999999998764321    1345666655544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=4.8e-10  Score=112.91  Aligned_cols=288  Identities=14%  Similarity=0.081  Sum_probs=162.8

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL  233 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L  233 (565)
                      .++++|++....       ...+ ..+..+++|++|+|++|.+...+.+.++++|++|+|++|.+.+-  . -++.+++|
T Consensus        44 ~~l~~L~l~~~~-------I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i--~-~l~~l~~L  112 (384)
T d2omza2          44 DQVTTLQADRLG-------IKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--T-PLANLTNL  112 (384)
T ss_dssp             TTCCEEECCSSC-------CCCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTC
T ss_pred             CCCCEEECCCCC-------CCCc-cccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccc--c-cccccccc
Confidence            578888887631       1223 24567889999999999888855588899999999999988321  1 16789999


Q ss_pred             ceeEeeecCCCcccccccCcccceeEc-------------------------------------------ccccccccch
Q 008452          234 EDLNFFECLGLKLLCISGAHKLKILTM-------------------------------------------ETLSSELKGV  270 (565)
Q Consensus       234 e~L~L~~c~~l~~l~i~~~~~L~~L~l-------------------------------------------~~c~~~l~~i  270 (565)
                      +.|++.++.............+..+..                                           ..+.......
T Consensus       113 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (384)
T d2omza2         113 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV  192 (384)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence            999988765421110000011111110                                           0000001111


Q ss_pred             hhcCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeeccccccccccc-ccCCcccEE
Q 008452          271 KIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERIT-ISSNQLKHL  349 (565)
Q Consensus       271 ~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~-~~~~~L~~L  349 (565)
                      ...+++++.+.++++.+. ..  .....+++|+.|.+.+..-..++ .+..+++|+.|++.+|...+... ..+++|+.|
T Consensus       193 ~~~l~~~~~l~l~~n~i~-~~--~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L  268 (384)
T d2omza2         193 LAKLTNLESLIATNNQIS-DI--TPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTEL  268 (384)
T ss_dssp             GGGCTTCSEEECCSSCCC-CC--GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cccccccceeeccCCccC-CC--CcccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCcccccccCCEe
Confidence            225678888888887652 21  12456677777766533222222 35678888888888864222111 234678888


Q ss_pred             eecCCc--ChhhccccCCCccceeEecCCC----CceecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEE
Q 008452          350 SLVHCA--SLKAINIDAPNLLSCNFWYNPF----PIISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDF  423 (565)
Q Consensus       350 ~L~~C~--~L~~L~i~~p~L~~~~~~g~~~----~~~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~  423 (565)
                      .++++.  ++..+ ...+.+..+...++..    .+....+++.+++..+.    ..+    +. .++++++|++|.++.
T Consensus       269 ~l~~~~l~~~~~~-~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~----l~~----l~-~l~~l~~L~~L~L~~  338 (384)
T d2omza2         269 KLGANQISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN----ISD----IS-PVSSLTKLQRLFFAN  338 (384)
T ss_dssp             ECCSSCCCCCGGG-TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC----CSC----CG-GGGGCTTCCEEECCS
T ss_pred             eccCcccCCCCcc-ccccccccccccccccccccccchhcccCeEECCCCC----CCC----Cc-ccccCCCCCEEECCC
Confidence            876653  22221 1234455555554433    12222466777765422    111    11 267888999999988


Q ss_pred             ecccccccccccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHHhhhcCCeeeec
Q 008452          424 LSNQSLFNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVFWICYPRTLSLS  482 (565)
Q Consensus       424 ~~~~~~~~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~  482 (565)
                      +....  ++ .|..     .++|++|.+..    ....++..    +..+++|++|.|+
T Consensus       339 n~l~~--l~-~l~~-----l~~L~~L~l~~----N~l~~l~~----l~~l~~L~~L~L~  381 (384)
T d2omza2         339 NKVSD--VS-SLAN-----LTNINWLSAGH----NQISDLTP----LANLTRITQLGLN  381 (384)
T ss_dssp             SCCCC--CG-GGGG-----CTTCCEEECCS----SCCCBCGG----GTTCTTCSEEECC
T ss_pred             CCCCC--Ch-hHcC-----CCCCCEEECCC----CcCCCChh----hccCCCCCEeeCC
Confidence            77552  22 3444     34588888752    22233221    3567899998873

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=4.2e-10  Score=113.31  Aligned_cols=270  Identities=15%  Similarity=0.110  Sum_probs=161.6

Q ss_pred             cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcc
Q 008452          182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTME  261 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~  261 (565)
                      ...+|++|.++++.+....++..+++|++|+|+++.+++-  .. ++++++|++|++++|.......+..+++|+.|++.
T Consensus        42 ~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l--~~-l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~  118 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF  118 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             HhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCC--cc-ccCCccccccccccccccccccccccccccccccc
Confidence            3468999999999988766778899999999999998432  22 78899999999999976444456778999999998


Q ss_pred             ccc-ccccchhhcCccccEeeecCCCC----------------------------------------CCCCceeeccccc
Q 008452          262 TLS-SELKGVKIVASSLQQLTLQFPFE----------------------------------------GQGTPVVDIAVCP  300 (565)
Q Consensus       262 ~c~-~~l~~i~~~~p~L~~L~l~~~~~----------------------------------------~~~~~~~~l~~~~  300 (565)
                      ++. ..+.... ....+..+....+.+                                        ...........++
T Consensus       119 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         119 NNQITDIDPLK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             SSCCCCCGGGT-TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccc-ccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            775 1111111 112222222111000                                        0000112233455


Q ss_pred             ccccccccccchHHHHHHhcCCCCcceeeccccccccccc--ccCCcccEEeecCCcChhhcc--ccCCCccceeEecCC
Q 008452          301 NLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERIT--ISSNQLKHLSLVHCASLKAIN--IDAPNLLSCNFWYNP  376 (565)
Q Consensus       301 ~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l~--~~~~~L~~L~L~~C~~L~~L~--i~~p~L~~~~~~g~~  376 (565)
                      +++.+.+.+..-..+. -...+++|++|++.+|. +..+.  ..+++|+.|++.++. ++.+.  -..++|+.+.++++.
T Consensus       198 ~~~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~~~  274 (384)
T d2omza2         198 NLESLIATNNQISDIT-PLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQ  274 (384)
T ss_dssp             TCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC
T ss_pred             ccceeeccCCccCCCC-cccccCCCCEEECCCCC-CCCcchhhcccccchhccccCc-cCCCCcccccccCCEeeccCcc
Confidence            5555555432111111 14567899999999873 22222  245789999988874 32221  245788888887765


Q ss_pred             C-Cc---eecccccceeeecccccCCCCcccchHHHHHhhCCCCceEEEEEecccccccccccccccCCCCCccceeEEE
Q 008452          377 F-PI---ISINSQCSWNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSLFNLYKFSRCCNSLPIQVETLRLR  452 (565)
Q Consensus       377 ~-~~---~~~~sL~~~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~~~~~~~~~c~~~~p~~l~~L~l~  452 (565)
                      . .+   .....++.+.+..+.        +..+. .+..++.++.|+++.+...+.  + .+..     .++|+.|.+.
T Consensus       275 l~~~~~~~~~~~l~~l~~~~n~--------l~~~~-~~~~~~~l~~L~ls~n~l~~l--~-~l~~-----l~~L~~L~L~  337 (384)
T d2omza2         275 ISNISPLAGLTALTNLELNENQ--------LEDIS-PISNLKNLTYLTLYFNNISDI--S-PVSS-----LTKLQRLFFA  337 (384)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSC--------CSCCG-GGGGCTTCSEEECCSSCCSCC--G-GGGG-----CTTCCEEECC
T ss_pred             cCCCCccccccccccccccccc--------ccccc-ccchhcccCeEECCCCCCCCC--c-cccc-----CCCCCEEECC
Confidence            4 12   222344445443311        11111 367889999999988775532  2 1333     3468999886


Q ss_pred             EEeecCCcchHHHHHHHHHhhhcCCeeeecc
Q 008452          453 MVLTDISPSEYEILLDGVFWICYPRTLSLST  483 (565)
Q Consensus       453 ~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~  483 (565)
                      ..    ...++.    .+-.+++|+++.++.
T Consensus       338 ~n----~l~~l~----~l~~l~~L~~L~l~~  360 (384)
T d2omza2         338 NN----KVSDVS----SLANLTNINWLSAGH  360 (384)
T ss_dssp             SS----CCCCCG----GGGGCTTCCEEECCS
T ss_pred             CC----CCCCCh----hHcCCCCCCEEECCC
Confidence            31    222221    234689999999954

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.09  E-value=3.3e-10  Score=105.92  Aligned_cols=140  Identities=16%  Similarity=0.134  Sum_probs=73.1

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL  233 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L  233 (565)
                      .++++|.+...       ....++ .+..+++|++|++++|.+.....+..+++|+.++++++.+++  +. -+..++.|
T Consensus        41 ~~L~~L~l~~~-------~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L  109 (227)
T d1h6ua2          41 DGITTLSAFGT-------GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VS-AIAGLQSI  109 (227)
T ss_dssp             HTCCEEECTTS-------CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CG-GGTTCTTC
T ss_pred             CCcCEEECCCC-------CCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--cc-cccccccc
Confidence            36666665542       112332 345566777777777666653345666677777776665521  11 13456667


Q ss_pred             ceeEeeecCCCcccccccCcccceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeeccccccccccccc
Q 008452          234 EDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAF  308 (565)
Q Consensus       234 e~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~  308 (565)
                      +.|.+.+|.......+...+.++.+.+..+. ......+ .+++|+.|.++++... .  ...++++++|+.|+++
T Consensus       110 ~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~-~--~~~l~~l~~L~~L~Ls  181 (227)
T d1h6ua2         110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVS-D--LTPLANLSKLTTLKAD  181 (227)
T ss_dssp             CEEECTTSCCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCC-C--CGGGTTCTTCCEEECC
T ss_pred             cccccccccccccchhccccchhhhhchhhh-hchhhhhccccccccccccccccc-c--chhhcccccceecccC
Confidence            7776666654333333334666666666553 1111222 5666666666666541 1  1124445555544443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=3.5e-10  Score=105.79  Aligned_cols=182  Identities=17%  Similarity=0.130  Sum_probs=129.1

Q ss_pred             ccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEc
Q 008452          181 FSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTM  260 (565)
Q Consensus       181 ~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l  260 (565)
                      ..+++|++|.+.+|.+...+.+..+++|++|+|+++.+++-  .. +..+++|+.|.+.+|....--.+..+++|+.+.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~--~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecc--cc-cccccccccccccccccccccccccccccccccc
Confidence            34679999999999988856688999999999999988331  11 6889999999999886532223566899999999


Q ss_pred             ccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccc
Q 008452          261 ETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERI  339 (565)
Q Consensus       261 ~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l  339 (565)
                      ++|. ......+ ..+.++.+.++++...   ....+..+++|+.|.+.+....... .+.++++|+.|+|++| .++.+
T Consensus       115 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n-~l~~l  188 (227)
T d1h6ua2         115 TSTQ-ITDVTPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN-KISDI  188 (227)
T ss_dssp             TTSC-CCCCGGGTTCTTCCEEECCSSCCC---CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCC
T ss_pred             cccc-ccccchhccccchhhhhchhhhhc---hhhhhccccccccccccccccccch-hhcccccceecccCCC-ccCCC
Confidence            9886 2222233 6788999999887652   2234678888998887643222222 2678999999999997 34444


Q ss_pred             c--ccCCcccEEeecCCcChhhcc--ccCCCccceeE
Q 008452          340 T--ISSNQLKHLSLVHCASLKAIN--IDAPNLLSCNF  372 (565)
Q Consensus       340 ~--~~~~~L~~L~L~~C~~L~~L~--i~~p~L~~~~~  372 (565)
                      .  ..+++|+.|+|++| +++.+.  -+.++|+.+.+
T Consensus       189 ~~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         189 SPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTL  224 (227)
T ss_dssp             GGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEE
T ss_pred             hhhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEe
Confidence            3  24578999999888 565553  13455555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=4.4e-10  Score=102.92  Aligned_cols=102  Identities=18%  Similarity=0.150  Sum_probs=50.8

Q ss_pred             cccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452          180 VFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT  259 (565)
Q Consensus       180 l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~  259 (565)
                      +..+++|++|+|++|.+...+.+.++++|++|+++++.+..-  . -+.+++.|+.|++.+|.....-.+..+++|+.|+
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  134 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--T-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE  134 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             cccCCCcCcCccccccccCcccccCCcccccccccccccccc--c-ccccccccccccccccccccccccchhhhhHHhh
Confidence            344556666666666555533355566666666666555111  1 1345566666666555443322333445555555


Q ss_pred             cccccccccchh-h-cCccccEeeecCCC
Q 008452          260 METLSSELKGVK-I-VASSLQQLTLQFPF  286 (565)
Q Consensus       260 l~~c~~~l~~i~-~-~~p~L~~L~l~~~~  286 (565)
                      +++|.  +..+. + .+++|++|++.+|.
T Consensus       135 l~~n~--l~~~~~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2         135 LSSNT--ISDISALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             CCSSC--CCCCGGGTTCTTCSEEECCSSC
T ss_pred             hhhhh--hccccccccccccccccccccc
Confidence            55542  22221 2 44555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.97  E-value=1.3e-09  Score=100.49  Aligned_cols=103  Identities=17%  Similarity=0.082  Sum_probs=55.0

Q ss_pred             cccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeE
Q 008452          180 VFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILT  259 (565)
Q Consensus       180 l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~  259 (565)
                      +..+++|++|+|++|.+...+....+++|+.|+++++.+++  +. -+..+++|+.|++.+|.....-.+..+++|+.+.
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~  140 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY  140 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred             HhhCCCCCEEeCCCccccCccccccCccccccccccccccc--cc-cccccccccccccccccccccccccccccccccc
Confidence            44566677777777666653344566667777776666632  11 1455666666666666442222233345666666


Q ss_pred             cccccccccchh-h-cCccccEeeecCCCC
Q 008452          260 METLSSELKGVK-I-VASSLQQLTLQFPFE  287 (565)
Q Consensus       260 l~~c~~~l~~i~-~-~~p~L~~L~l~~~~~  287 (565)
                      ++++.  +.... . .+++|+.++++++.+
T Consensus       141 ~~~n~--l~~~~~~~~l~~L~~l~l~~n~l  168 (210)
T d1h6ta2         141 LGNNK--ITDITVLSRLTKLDTLSLEDNQI  168 (210)
T ss_dssp             CCSSC--CCCCGGGGGCTTCSEEECCSSCC
T ss_pred             ccccc--ccccccccccccccccccccccc
Confidence            65553  11111 1 455566666655543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=1.1e-09  Score=100.03  Aligned_cols=149  Identities=12%  Similarity=0.059  Sum_probs=110.9

Q ss_pred             cCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEcc
Q 008452          182 SANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTME  261 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~  261 (565)
                      .+++|++|.+++|.+........+++|++|+|+++.+++-  .. +.++++|++|++..|.....-.+.++++|+.|.++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~  114 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF  114 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCc--cc-ccCCccccccccccccccccccccccccccccccc
Confidence            3568899999999888755678899999999999988432  12 67899999999999976443346678999999999


Q ss_pred             cccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccc
Q 008452          262 TLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERI  339 (565)
Q Consensus       262 ~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l  339 (565)
                      +|. ......+ .+++|+.|+++++.+. .  ...+..+++|+.|.+.+..-..+. .++++++|+.|++++|. ++.+
T Consensus       115 ~~~-~~~~~~~~~l~~L~~L~l~~n~l~-~--~~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~-i~~i  187 (199)
T d2omxa2         115 NNQ-ITDIDPLKNLTNLNRLELSSNTIS-D--ISALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNK-VSDI  187 (199)
T ss_dssp             SSC-CCCCGGGTTCTTCSEEECCSSCCC-C--CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCC
T ss_pred             ccc-cccccccchhhhhHHhhhhhhhhc-c--cccccccccccccccccccccCCc-cccCCCCCCEEECCCCC-CCCC
Confidence            886 2222233 7899999999999862 1  225788899998887643222222 26789999999999973 4443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.95  E-value=1.3e-09  Score=100.62  Aligned_cols=159  Identities=17%  Similarity=0.151  Sum_probs=113.6

Q ss_pred             CCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-ccccCcccceeEcc
Q 008452          183 ANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-CISGAHKLKILTME  261 (565)
Q Consensus       183 ~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-~i~~~~~L~~L~l~  261 (565)
                      +.+|+.|.+++|.+........+++|++|+|+++.+++  +.. ++.+++|+.|++++|.. +.+ .+..+++|+.|++.
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC--ccc-cccCccccccccccccc-cccccccccccccccccc
Confidence            45789999999988875567889999999999998843  222 46799999999999864 333 35568999999999


Q ss_pred             cccccccch-hh-cCccccEeeecCCCCCCCCceeecccccccccccccccchHHHHHHhcCCCCcceeecccccccccc
Q 008452          262 TLSSELKGV-KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLSLFACSSFERI  339 (565)
Q Consensus       262 ~c~~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~L~~C~~~~~l  339 (565)
                      +|.  ...+ .+ .+++|+.+.++++.+..   ...++.+++|+.+.+.+..-..+.. +.++++|++|+|++|. ++.+
T Consensus       121 ~~~--~~~~~~l~~l~~l~~l~~~~n~l~~---~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~-i~~l  193 (210)
T d1h6ta2         121 HNG--ISDINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDL  193 (210)
T ss_dssp             TSC--CCCCGGGGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBC
T ss_pred             ccc--ccccccccccccccccccccccccc---ccccccccccccccccccccccccc-ccCCCCCCEEECCCCC-CCCC
Confidence            985  2222 23 78899999999988622   2246678888888776432222322 6789999999999873 4444


Q ss_pred             c--ccCCcccEEeec
Q 008452          340 T--ISSNQLKHLSLV  352 (565)
Q Consensus       340 ~--~~~~~L~~L~L~  352 (565)
                      +  ..+++|+.|+|+
T Consensus       194 ~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         194 RALAGLKNLDVLELF  208 (210)
T ss_dssp             GGGTTCTTCSEEEEE
T ss_pred             hhhcCCCCCCEEEcc
Confidence            3  123556666554

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.9e-10  Score=75.05  Aligned_cols=35  Identities=29%  Similarity=0.403  Sum_probs=32.9

Q ss_pred             CCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhh
Q 008452           33 ISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFH   67 (565)
Q Consensus        33 is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw   67 (565)
                      ++.||+||+.+||+||+.+|+++++.|||+|+++.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.91  E-value=2.2e-09  Score=104.75  Aligned_cols=99  Identities=14%  Similarity=0.077  Sum_probs=50.2

Q ss_pred             CcccceeEcccccccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchH-HHHHHhcCCCCcceee
Q 008452          252 AHKLKILTMETLSSELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQ-EFCTLISKFPLLEDLS  329 (565)
Q Consensus       252 ~~~L~~L~l~~c~~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~-~l~~l~~~~~~L~~L~  329 (565)
                      +++|+.+++.+|  .+..+.. ..++|+.|+++++.. .......+..++.++.|...+.... .....+.++++|++|+
T Consensus       149 l~~L~~l~l~~n--~l~~l~~~~~~~L~~L~l~~n~~-~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         149 MKKLSYIRIADT--NITTIPQGLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             CTTCCEEECCSS--CCCSCCSSCCTTCSEEECTTSCC-CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             ccccCccccccC--CccccCcccCCccCEEECCCCcC-CCCChhHhhccccccccccccccccccccccccccccceeee
Confidence            456666666665  3333322 345666666666654 2222334555666665555422111 1123445667777777


Q ss_pred             cccccccccccc---cCCcccEEeecCC
Q 008452          330 LFACSSFERITI---SSNQLKHLSLVHC  354 (565)
Q Consensus       330 L~~C~~~~~l~~---~~~~L~~L~L~~C  354 (565)
                      |++| .+..++.   ..++|+.|+|+++
T Consensus       226 L~~N-~L~~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         226 LNNN-KLVKVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             CCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred             cccc-cccccccccccccCCCEEECCCC
Confidence            7766 2333321   2356666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.8e-10  Score=108.27  Aligned_cols=173  Identities=21%  Similarity=0.079  Sum_probs=100.5

Q ss_pred             cccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-ccc
Q 008452          174 YTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-CIS  250 (565)
Q Consensus       174 ~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-~i~  250 (565)
                      ..+|..+.  ++|++|+|++|.+..  +..+.++++|++|+|++|.++.  +. ....+++|+.|+|++|...... .+.
T Consensus        23 ~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~   97 (266)
T d1p9ag_          23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHNQLQSLPLLGQ   97 (266)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSSCCSSCCCCTT
T ss_pred             CeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--cc-cccccccccccccccccccccccccc
Confidence            34555443  467777777777765  3456677777777777776631  11 1245777777777777542211 223


Q ss_pred             cCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchH-HHHHHhcCCCCcce
Q 008452          251 GAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQ-EFCTLISKFPLLED  327 (565)
Q Consensus       251 ~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~-~l~~l~~~~~~L~~  327 (565)
                      .+++|+.|+++++. ..+..... ..++++.|.++++.+ .......+..+++|+.|++.+..-. .....+..+++|+.
T Consensus        98 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l-~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~  176 (266)
T d1p9ag_          98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT  176 (266)
T ss_dssp             TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred             cccccccccccccccceeecccccccccccccccccccc-ceeccccccccccchhcccccccccccCccccccccccce
Confidence            46777777777764 22222222 566777777777765 2223334556667776666532211 12234567788888


Q ss_pred             eecccccccccccc---cCCcccEEeecC
Q 008452          328 LSLFACSSFERITI---SSNQLKHLSLVH  353 (565)
Q Consensus       328 L~L~~C~~~~~l~~---~~~~L~~L~L~~  353 (565)
                      |+|+++. +..++.   ...+|+.|.|.+
T Consensus       177 L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         177 LLLQENS-LYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             EECCSSC-CCCCCTTTTTTCCCSEEECCS
T ss_pred             eecccCC-CcccChhHCCCCCCCEEEecC
Confidence            8888763 444542   235666666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.85  E-value=4.9e-10  Score=110.06  Aligned_cols=128  Identities=20%  Similarity=0.177  Sum_probs=86.4

Q ss_pred             CcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecC-ccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCc
Q 008452          155 GVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAG-CKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECH  231 (565)
Q Consensus       155 ~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp  231 (565)
                      +|.+|+|....-    .....+|..+.++++|++|+|++ +.+.+  |+.+.++++|++|+|+++.+... ....+..++
T Consensus        51 ~v~~L~L~~~~l----~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~  125 (313)
T d1ogqa_          51 RVNNLDLSGLNL----PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIK  125 (313)
T ss_dssp             CEEEEEEECCCC----SSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCT
T ss_pred             EEEEEECCCCCC----CCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchh
Confidence            588888876311    23447889999999999999987 46664  67788999999999999987221 122356788


Q ss_pred             CCceeEeeecCCCccc--ccccCcccceeEccccc-cc-ccchhhcCcc-ccEeeecCCCC
Q 008452          232 FLEDLNFFECLGLKLL--CISGAHKLKILTMETLS-SE-LKGVKIVASS-LQQLTLQFPFE  287 (565)
Q Consensus       232 ~Le~L~L~~c~~l~~l--~i~~~~~L~~L~l~~c~-~~-l~~i~~~~p~-L~~L~l~~~~~  287 (565)
                      .|+.+++..|.....+  .+..+++|+.++++++. .+ +.......++ ++.+.++++.+
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             hhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            8999998887654332  35557888888888875 11 1111123444 36677766654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.9e-09  Score=100.31  Aligned_cols=185  Identities=18%  Similarity=0.056  Sum_probs=88.6

Q ss_pred             CccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc-cccCcccceeEccc
Q 008452          185 FLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC-ISGAHKLKILTMET  262 (565)
Q Consensus       185 ~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~-i~~~~~L~~L~l~~  262 (565)
                      ++.+++.+++.+.. |+.+  .++|++|+|+++.++.- ....+.++++|++|+|++|.. +.+. ...+++|+.|++++
T Consensus        11 ~~~~v~C~~~~L~~iP~~l--p~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~L~~N~l-~~l~~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSH   86 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEEECCS
T ss_pred             CCeEEEccCCCCCeeCcCc--CcCCCEEECcCCcCCCc-CHHHhhccccccccccccccc-ccccccccccccccccccc
Confidence            44445555555554 2222  14566777766665210 012245566677777766633 3332 23356667777666


Q ss_pred             cc-ccccchhhcCccccEeeecCCCCCCCCceeecccccccccccccccchHH-HHHHhcCCCCcceeeccccccccccc
Q 008452          263 LS-SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQE-FCTLISKFPLLEDLSLFACSSFERIT  340 (565)
Q Consensus       263 c~-~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~~-l~~l~~~~~~L~~L~L~~C~~~~~l~  340 (565)
                      +. ..........++|+.|+++++.. .......+..+.+++.|.+....... -...+..+++|+.|++.++. +..+.
T Consensus        87 N~l~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~  164 (266)
T d1p9ag_          87 NQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELP  164 (266)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCC
T ss_pred             cccccccccccccccccccccccccc-ceeeccccccccccccccccccccceeccccccccccchhccccccc-ccccC
Confidence            64 11222222556666666666654 22223334455555555544221111 12234456666666666652 22221


Q ss_pred             ----ccCCcccEEeecCCcChhhcc---ccCCCccceeEecCC
Q 008452          341 ----ISSNQLKHLSLVHCASLKAIN---IDAPNLLSCNFWYNP  376 (565)
Q Consensus       341 ----~~~~~L~~L~L~~C~~L~~L~---i~~p~L~~~~~~g~~  376 (565)
                          ....+|+.|+|++.. |+.+.   .+.++|+.+.+.|++
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCC
Confidence                123556666666542 44332   122345555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.78  E-value=7.6e-09  Score=100.85  Aligned_cols=110  Identities=15%  Similarity=0.015  Sum_probs=64.4

Q ss_pred             ccccCcccccCCCccEEEecCccCCC-C-CcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccc
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ-P-CYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCIS  250 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~-~-~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~  250 (565)
                      ...+|..+.  ++|++|+|++|.+.. + ..+.++++|++|+++++.+..- ....+.+++.|+.|++.+|.. +.+...
T Consensus        22 L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~l-~~l~~~   97 (305)
T d1xkua_          22 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQL-KELPEK   97 (305)
T ss_dssp             CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCC-SBCCSS
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCcc-CcCccc
Confidence            345665553  568888888887776 3 3567788888888888776211 112356678888888887743 333322


Q ss_pred             cCcccceeEccccc-ccccchhh-cCccccEeeecCCC
Q 008452          251 GAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPF  286 (565)
Q Consensus       251 ~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~  286 (565)
                      ..+.++.|.+..+. ..+..... ..+.+..+.+..+.
T Consensus        98 ~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~  135 (305)
T d1xkua_          98 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP  135 (305)
T ss_dssp             CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred             hhhhhhhhhccccchhhhhhhhhhcccccccccccccc
Confidence            34566777666653 12222222 34455555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.5e-08  Score=97.81  Aligned_cols=178  Identities=17%  Similarity=0.089  Sum_probs=117.0

Q ss_pred             ccccCcccccCCCccEEEecCccCCC-C-CcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc---
Q 008452          173 TYTLPQTVFSANFLTHLRLAGCKLEQ-P-CYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL---  247 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c~l~~-~-~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l---  247 (565)
                      ...+|..+.  +++++|+|++|.+.. + ..+.++++|+.|+++++.+..- .......++.++++.+..+..++.+   
T Consensus        23 L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-~~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          23 LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc-ccccccccccccccccccccccccccch
Confidence            345555443  578999999999877 3 4578899999999999887221 1123466888999888777665554   


Q ss_pred             ccccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccccccchH-HHHHHhcCCCC
Q 008452          248 CISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNLLGQ-EFCTLISKFPL  324 (565)
Q Consensus       248 ~i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i~~~-~l~~l~~~~~~  324 (565)
                      .+.++++|+.|++..+. ..+..... .+++|+.++++++.+ +......+..+++|+.|++.+..-. .....+.++++
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l-~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccc-cccChhHhccccchhhcccccCcccccchhhhccccc
Confidence            45567899999999885 22222233 578899999999886 3333345677778887776643222 22345677888


Q ss_pred             cceeecccccccccccc---cCCcccEEeecCC
Q 008452          325 LEDLSLFACSSFERITI---SSNQLKHLSLVHC  354 (565)
Q Consensus       325 L~~L~L~~C~~~~~l~~---~~~~L~~L~L~~C  354 (565)
                      |+.|++.++......+.   ..++|+.|+++++
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cchhhhhhccccccChhHhhhhhhccccccccc
Confidence            88888887643322221   2245555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=6.1e-09  Score=91.74  Aligned_cols=128  Identities=14%  Similarity=0.017  Sum_probs=80.6

Q ss_pred             ccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc---cccCcccc
Q 008452          181 FSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC---ISGAHKLK  256 (565)
Q Consensus       181 ~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~---i~~~~~L~  256 (565)
                      .++..|++|+|++|.+.. +..+..+++|+.|+|++|.+..  +.. +..+|+|++|++++|.. +.+.   ...+++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhcccccc-cCCCccccccccccc
Confidence            355678888888888877 4445678888888888887732  111 46788888888888864 2221   22367888


Q ss_pred             eeEccccc-ccccch-hh-cCccccEeeecCCCCCCCCc--eeecccccccccccccccch
Q 008452          257 ILTMETLS-SELKGV-KI-VASSLQQLTLQFPFEGQGTP--VVDIAVCPNLKKFRAFNLLG  312 (565)
Q Consensus       257 ~L~l~~c~-~~l~~i-~~-~~p~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~~~~i~~  312 (565)
                      .|++++|. ..+..+ .+ .+|+|++|++++|++...+.  ...++.+++|+.|+...++.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i~~  151 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  151 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCCCCH
Confidence            88888875 233332 23 67888888888887522211  11244555555555554444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.66  E-value=1.1e-08  Score=100.08  Aligned_cols=176  Identities=12%  Similarity=-0.021  Sum_probs=109.4

Q ss_pred             hCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          153 ENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       153 ~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      .+++++|+|....     .....+|..+.++++|++|+|++|.+..  +..+..++.|+.++++.+..... +...+..+
T Consensus        75 L~~L~~L~Ls~~N-----~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l  148 (313)
T d1ogqa_          75 LPYLNFLYIGGIN-----NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSL  148 (313)
T ss_dssp             CTTCSEEEEEEET-----TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGC
T ss_pred             Ccccccccccccc-----ccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccC
Confidence            4699999997521     1234689999999999999999998877  55678899999999999887321 22346789


Q ss_pred             cCCceeEeeecCCCccc--ccccCccc-ceeEccccc-ccccchhhcCccccEeeecCCCCCCCCceeeccccccccccc
Q 008452          231 HFLEDLNFFECLGLKLL--CISGAHKL-KILTMETLS-SELKGVKIVASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFR  306 (565)
Q Consensus       231 p~Le~L~L~~c~~l~~l--~i~~~~~L-~~L~l~~c~-~~l~~i~~~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  306 (565)
                      +.|+.+++++|.....+  .+..+.++ +.+.+..+. .+...-.+....+..+++..+.. ....+..++.+++|+.+.
T Consensus       149 ~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~-~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML-EGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE-EECCGGGCCTTSCCSEEE
T ss_pred             cccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            99999999998764332  12223443 677777664 12222222233444566655543 233344445556666555


Q ss_pred             ccccchHHHHHHhcCCCCcceeecccccc
Q 008452          307 AFNLLGQEFCTLISKFPLLEDLSLFACSS  335 (565)
Q Consensus       307 ~~~i~~~~l~~l~~~~~~L~~L~L~~C~~  335 (565)
                      ..+.........+..+++|+.|+|++|..
T Consensus       228 ~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l  256 (313)
T d1ogqa_         228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             CCSSEECCBGGGCCCCTTCCEEECCSSCC
T ss_pred             cccccccccccccccccccccccCccCee
Confidence            44322111122345566667777766543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.59  E-value=5.7e-10  Score=102.03  Aligned_cols=113  Identities=19%  Similarity=0.123  Sum_probs=84.1

Q ss_pred             cccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-ccc
Q 008452          172 HTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-CIS  250 (565)
Q Consensus       172 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-~i~  250 (565)
                      ....+|.++..+++|++|+|++|.+...+.+..+++|++|+|++|.+++  +..+...++.|+.|++.+|.. +.+ .+.
T Consensus        36 ~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i-~~l~~~~  112 (198)
T d1m9la_          36 PIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI-ASLSGIE  112 (198)
T ss_dssp             TCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEEC-CCHHHHH
T ss_pred             chhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--ccccccccccccccccccccc-ccccccc
Confidence            3456667788889999999999988875567889999999999998832  233445567899999999854 333 244


Q ss_pred             cCcccceeEccccc-ccccch-hh-cCccccEeeecCCCC
Q 008452          251 GAHKLKILTMETLS-SELKGV-KI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       251 ~~~~L~~L~l~~c~-~~l~~i-~~-~~p~L~~L~l~~~~~  287 (565)
                      .+++|+.|++++|. ..+..+ .+ .+|+|++|++++|++
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            57899999999885 233333 23 688999999998874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.8e-08  Score=97.11  Aligned_cols=171  Identities=16%  Similarity=0.073  Sum_probs=115.1

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcc-cccCCCccEEEecCccCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQT-VFSANFLTHLRLAGCKLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC  230 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c  230 (565)
                      .++++|+|+.       ..-..+|.. +..+++|++|+++++.+..  ...+..++.++.+...........-...+.++
T Consensus        32 ~~~~~L~Ls~-------N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l  104 (284)
T d1ozna_          32 AASQRIFLHG-------NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL  104 (284)
T ss_dssp             TTCSEEECTT-------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred             CCCCEEECcC-------CcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhccc
Confidence            4788888765       233456653 5568899999999988776  45556778888887654332101012236778


Q ss_pred             cCCceeEeeecCCC--cccccccCcccceeEcccccccccch---hh-cCccccEeeecCCCCCCCCceeeccccccccc
Q 008452          231 HFLEDLNFFECLGL--KLLCISGAHKLKILTMETLSSELKGV---KI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKK  304 (565)
Q Consensus       231 p~Le~L~L~~c~~l--~~l~i~~~~~L~~L~l~~c~~~l~~i---~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  304 (565)
                      ++|++|++..|...  ........++|+.+++.++.  +..+   .+ ..++|+.|+++++.+ .......+..+++|+.
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~--l~~i~~~~f~~~~~L~~L~l~~N~l-~~l~~~~f~~l~~L~~  181 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDR  181 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhcccc--ccccChhHhccccchhhcccccCcc-cccchhhhccccccch
Confidence            99999999988652  22233346889999999884  3333   23 678899999999886 3333345678888888


Q ss_pred             ccccccch-HHHHHHhcCCCCcceeeccccc
Q 008452          305 FRAFNLLG-QEFCTLISKFPLLEDLSLFACS  334 (565)
Q Consensus       305 L~~~~i~~-~~l~~l~~~~~~L~~L~L~~C~  334 (565)
                      +.+.+..- ...+..+.++++|+.|+++++.
T Consensus       182 l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             hhhhhccccccChhHhhhhhhcccccccccc
Confidence            87764322 2335567888999999999864

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.9e-08  Score=81.12  Aligned_cols=38  Identities=29%  Similarity=0.417  Sum_probs=36.0

Q ss_pred             CCCcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhh
Q 008452           29 TMDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKF   66 (565)
Q Consensus        29 ~~D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~l   66 (565)
                      ..|.|+.||+||+.+||+||+.+|+++++.|||+|+.+
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999975

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.5e-08  Score=89.11  Aligned_cols=127  Identities=15%  Similarity=0.079  Sum_probs=82.3

Q ss_pred             CcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-ccccCcccceeEcccccccccch----hhcC
Q 008452          200 CYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-CISGAHKLKILTMETLSSELKGV----KIVA  274 (565)
Q Consensus       200 ~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-~i~~~~~L~~L~l~~c~~~l~~i----~~~~  274 (565)
                      +.+.++..|++|+|+++.++.  ++.+...+++|+.|+|++|.. +.+ .+..+++|+.|++++|.  +..+    ...+
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i-~~l~~~~~l~~L~~L~ls~N~--i~~l~~~~~~~l   86 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEI-RKLDGFPLLRRLKTLLVNNNR--ICRIGEGLDQAL   86 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCC-CEECCCCCCSSCCEEECCSSC--CCEECSCHHHHC
T ss_pred             HhccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCC-CccCCcccCcchhhhhccccc--ccCCCccccccc
Confidence            456678899999999999832  334567899999999999964 333 35668999999999995  3333    2368


Q ss_pred             ccccEeeecCCCCCCCCceeeccccccccccccccc--ch--HHHHHHhcCCCCcceeecc
Q 008452          275 SSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRAFNL--LG--QEFCTLISKFPLLEDLSLF  331 (565)
Q Consensus       275 p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~~~i--~~--~~l~~l~~~~~~L~~L~L~  331 (565)
                      |+|+.|++++|.+.+......+..+++|+.|++.+.  +.  ..-...+..+|+|+.|+-.
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            999999999998622222223455556665554421  11  1112234555566555533

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=4.4e-08  Score=81.89  Aligned_cols=98  Identities=18%  Similarity=0.093  Sum_probs=41.6

Q ss_pred             EEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccccccCcccceeEccccc-cc
Q 008452          188 HLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLCISGAHKLKILTMETLS-SE  266 (565)
Q Consensus       188 ~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~-~~  266 (565)
                      .|+|+++.+...+....+++|++|++++|.++.  +...++.+++|+.|++++|....--.+..+++|+.|+++++. ..
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCS
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccCccccccccCeEECCCCccCC
Confidence            344444444443334444445555555444411  111233444455555544432111122334455555555443 11


Q ss_pred             ccch-hh-cCccccEeeecCCCC
Q 008452          267 LKGV-KI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       267 l~~i-~~-~~p~L~~L~l~~~~~  287 (565)
                      +..+ .+ .+|+|+.|++++|.+
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCchhhcCCCCCCEEECCCCcC
Confidence            2211 12 456666666666653

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=1e-08  Score=82.36  Aligned_cols=38  Identities=26%  Similarity=0.407  Sum_probs=35.6

Q ss_pred             CCcCCCCchHHHHHHHcCCChHHHHHHhhcchhhhhhh
Q 008452           30 MDRISDLPTFIIHHIMSFLPAKEAARASILSKRWEKFH   67 (565)
Q Consensus        30 ~D~is~LPd~vL~~ILs~L~~~d~vr~s~lSkrWr~lw   67 (565)
                      .|.|+.||+||+.+||+||+.+|+++++.|||+|+++.
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~   40 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   40 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999998754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=6e-08  Score=99.09  Aligned_cols=330  Identities=15%  Similarity=0.095  Sum_probs=170.5

Q ss_pred             CcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC------CCcccCCCcCcEEEcCCeeechHHHHHHHh
Q 008452          155 GVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ------PCYAMCFLSLKKLHLYGVYITEQMVQKLLH  228 (565)
Q Consensus       155 ~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~------~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~  228 (565)
                      +|++|+++...     .....+...+..+++|++|+|.+|.+..      ......+++|++|+|+++.+++.++..+..
T Consensus         3 ~l~~ld~~~~~-----i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           3 DIQSLDIQCEE-----LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEESCC-----CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCCEEEeeCCc-----CChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH
Confidence            57888886521     1122223334456788888898887764      122357888889999888887776666654


Q ss_pred             c----CcCCceeEeeecCCCccc-------ccccCcccceeEccccc---ccccchh--h--------------------
Q 008452          229 E----CHFLEDLNFFECLGLKLL-------CISGAHKLKILTMETLS---SELKGVK--I--------------------  272 (565)
Q Consensus       229 ~----cp~Le~L~L~~c~~l~~l-------~i~~~~~L~~L~l~~c~---~~l~~i~--~--------------------  272 (565)
                      .    .+.|++|+|++|.. +..       .+..+++|++|++++|.   .+...+.  +                    
T Consensus        78 ~l~~~~~~L~~L~L~~n~i-t~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  156 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCL-TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  156 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCC-BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHhcCCCCCCEEECCCCCc-cccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchh
Confidence            3    45788888888853 321       13346888888888774   1111110  0                    


Q ss_pred             ----------cCccccEeeecCCCCCCCCceee---cc-ccccccccccc--ccch---HHHHHHhcCCCCcceeecccc
Q 008452          273 ----------VASSLQQLTLQFPFEGQGTPVVD---IA-VCPNLKKFRAF--NLLG---QEFCTLISKFPLLEDLSLFAC  333 (565)
Q Consensus       273 ----------~~p~L~~L~l~~~~~~~~~~~~~---l~-~~~~L~~L~~~--~i~~---~~l~~l~~~~~~L~~L~L~~C  333 (565)
                                ..+.++.+.++++..........   +. .-.....+...  .+..   ......+...+.++.+.+.++
T Consensus       157 ~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n  236 (460)
T d1z7xw1         157 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  236 (460)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc
Confidence                      01122222222222100000000   00 00011112111  1111   223344556677777777765


Q ss_pred             cccc--------cccccCCcccEEeecCCcChh----hc---cccCCCccceeEecCCCCc---e--------ecccccc
Q 008452          334 SSFE--------RITISSNQLKHLSLVHCASLK----AI---NIDAPNLLSCNFWYNPFPI---I--------SINSQCS  387 (565)
Q Consensus       334 ~~~~--------~l~~~~~~L~~L~L~~C~~L~----~L---~i~~p~L~~~~~~g~~~~~---~--------~~~sL~~  387 (565)
                      ....        ........++.|++.+|.--.    .+   ....+.+..+.++++....   .        ....|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~  316 (460)
T d1z7xw1         237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES  316 (460)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             cccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence            3211        112234678888888774110    00   0134566777766665411   0        0125666


Q ss_pred             eeeecccccCCCCcccchHHHHHhhCCCCceEEEEEeccccc---ccccccccccCCCCCccceeEEEEEeecCCcchHH
Q 008452          388 WNIHFNCQDDHDGGWFLNFKDFLRISKKIEELSIDFLSNQSL---FNLYKFSRCCNSLPIQVETLRLRMVLTDISPSEYE  464 (565)
Q Consensus       388 ~~l~~~~~~~~~~~~l~~l~~~l~~l~~Le~L~i~~~~~~~~---~~~~~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~  464 (565)
                      +.+..+.  ....+ +..+..++...+.|++|+++.+...+.   .++..+..    ....|+.|.|...  ..+.....
T Consensus       317 l~l~~~~--l~~~~-~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~----~~~~L~~L~Ls~n--~i~~~~~~  387 (460)
T d1z7xw1         317 LWVKSCS--FTAAC-CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ----PGSVLRVLWLADC--DVSDSSCS  387 (460)
T ss_dssp             EECTTSC--CBGGG-HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS----TTCCCCEEECTTS--CCCHHHHH
T ss_pred             ccccccc--hhhhh-hhhcccccccccchhhhheeeecccCcccchhhhhhhc----ccCCCCEEECCCC--CCChHHHH
Confidence            6665421  11122 455677888889999999987764321   12222322    1234787777521  22334456


Q ss_pred             HHHHHHHhhhcCCeeeeccCCCChhhHHHHHHHhh
Q 008452          465 ILLDGVFWICYPRTLSLSTVNKGRPFIVWLYDYLR  499 (565)
Q Consensus       465 ~~~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~  499 (565)
                      .+...+..+++|+.|.++.......-...+.+.+.
T Consensus       388 ~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~  422 (460)
T d1z7xw1         388 SLAATLLANHSLRELDLSNNCLGDAGILQLVESVR  422 (460)
T ss_dssp             HHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHH
Confidence            66677778899999999553333333333444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.45  E-value=1.2e-07  Score=93.83  Aligned_cols=15  Identities=20%  Similarity=0.093  Sum_probs=8.3

Q ss_pred             hcCCCCcceeecccc
Q 008452          319 ISKFPLLEDLSLFAC  333 (565)
Q Consensus       319 ~~~~~~L~~L~L~~C  333 (565)
                      +..+++|+.|+|++|
T Consensus       211 l~~~~~L~~L~Ls~N  225 (344)
T d2ca6a1         211 LAYCQELKVLDLQDN  225 (344)
T ss_dssp             GGGCTTCCEEECCSS
T ss_pred             hcchhhhcccccccc
Confidence            445555666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.9e-07  Score=93.86  Aligned_cols=361  Identities=15%  Similarity=0.055  Sum_probs=195.0

Q ss_pred             CccEEEEEEeccCCCCCchHHHHHHHHHHhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCC---CC
Q 008452          124 SIQKLRIVIGVLDPEHLPPLLDKWIALAIENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQ---PC  200 (565)
Q Consensus       124 ~i~~l~l~~~~~~~~~~~~~i~~wi~~~~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~---~~  200 (565)
                      .++++.+++..    ..+..+..++.  ..++++.|+|..+.-.  ......+...+..+++|++|+|++|.+.+   ..
T Consensus         3 ~l~~ld~~~~~----i~~~~~~~l~~--~l~~l~~L~L~~~~i~--~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~   74 (460)
T d1z7xw1           3 DIQSLDIQCEE----LSDARWAELLP--LLQQCQVVRLDDCGLT--EARCKDISSALRVNPALAELNLRSNELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEESCC----CCHHHHHHHHH--HHTTCSEEEEESSCCC--HHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             CCCEEEeeCCc----CChHHHHHHHH--hCCCCCEEEeCCCCCC--HHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence            46677776654    23444444443  3578999999874211  01223555566788999999999998754   11


Q ss_pred             cc----cCCCcCcEEEcCCeeechHHH---HHHHhcCcCCceeEeeecCCCc------------------ccc-------
Q 008452          201 YA----MCFLSLKKLHLYGVYITEQMV---QKLLHECHFLEDLNFFECLGLK------------------LLC-------  248 (565)
Q Consensus       201 ~~----~~l~~Lk~L~L~~~~~~~~~l---~~ll~~cp~Le~L~L~~c~~l~------------------~l~-------  248 (565)
                      ..    ....+|++|+|++|.+++.++   ...+..++.|++|++.+|..-.                  ...       
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  154 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  154 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccc
Confidence            11    123579999999999866544   4456789999999998875300                  000       


Q ss_pred             ----------cccCcccceeEccccc---ccccch----hhcCccccEeeecCCCCCCCCc---eeeccccccccccccc
Q 008452          249 ----------ISGAHKLKILTMETLS---SELKGV----KIVASSLQQLTLQFPFEGQGTP---VVDIAVCPNLKKFRAF  308 (565)
Q Consensus       249 ----------i~~~~~L~~L~l~~c~---~~l~~i----~~~~p~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~~~  308 (565)
                                +...+.++.+.++.+.   .+...+    ...-.....+...++.......   ...+...+.++.+...
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~  234 (460)
T d1z7xw1         155 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG  234 (460)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchh
Confidence                      0013567777777765   111111    1122345667776665422211   1123345566666655


Q ss_pred             c--cch----HHHHHHhcCCCCcceeecccccccccc-------cccCCcccEEeecCCc----Chhhc----cccCCCc
Q 008452          309 N--LLG----QEFCTLISKFPLLEDLSLFACSSFERI-------TISSNQLKHLSLVHCA----SLKAI----NIDAPNL  367 (565)
Q Consensus       309 ~--i~~----~~l~~l~~~~~~L~~L~L~~C~~~~~l-------~~~~~~L~~L~L~~C~----~L~~L----~i~~p~L  367 (565)
                      .  +.+    ............|+.|++++|......       -...+.++.+.+++++    .++.+    ......|
T Consensus       235 ~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L  314 (460)
T d1z7xw1         235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL  314 (460)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred             hccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence            3  222    233445566788999999887322111       1134677777777654    11221    1123456


Q ss_pred             cceeEecCCCCcee------c----ccccceeeecccccCCCCcccchHHHHH-hhCCCCceEEEEEeccccc---cccc
Q 008452          368 LSCNFWYNPFPIIS------I----NSQCSWNIHFNCQDDHDGGWFLNFKDFL-RISKKIEELSIDFLSNQSL---FNLY  433 (565)
Q Consensus       368 ~~~~~~g~~~~~~~------~----~sL~~~~l~~~~~~~~~~~~l~~l~~~l-~~l~~Le~L~i~~~~~~~~---~~~~  433 (565)
                      +.+.+.++......      .    .+|+++++..+.  ..+.+ +..+.+.+ ++.+.|++|+++.+...+.   .+..
T Consensus       315 ~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~--i~~~g-~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR--LEDAG-VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB--CHHHH-HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhcccccccccchhhhheeeec--ccCcc-cchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            66666665442111      1    267888886532  12222 23333334 3567799999988774421   1333


Q ss_pred             ccccccCCCCCccceeEEEEEeecCCcchHHHHHHHHH-hhhcCCeeeeccCCCChhhHHHHHHHhhCCCC
Q 008452          434 KFSRCCNSLPIQVETLRLRMVLTDISPSEYEILLDGVF-WICYPRTLSLSTVNKGRPFIVWLYDYLRNPAK  503 (565)
Q Consensus       434 ~~~~c~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~  503 (565)
                      .+..|     ++|++|.|..  ...+..+...+...+. ..+.|+++.+..........+. .+.+.++++
T Consensus       392 ~l~~~-----~~L~~L~Ls~--N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~-l~~l~~~~~  454 (460)
T d1z7xw1         392 TLLAN-----HSLRELDLSN--NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR-LQALEKDKP  454 (460)
T ss_dssp             HHHHC-----CCCCEEECCS--SSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH-HHHHHHHCT
T ss_pred             HHhcC-----CCCCEEECCC--CcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHH-HHHHHHhCC
Confidence            34442     3588888752  1222333444444443 2347999999543333333332 233444433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.28  E-value=3e-07  Score=90.85  Aligned_cols=83  Identities=16%  Similarity=0.187  Sum_probs=43.9

Q ss_pred             cCccccEeeecCCCCCCCC----ceeecccccccccccccc--cchH---HHHHHhcCCCCcceeecccccc----cccc
Q 008452          273 VASSLQQLTLQFPFEGQGT----PVVDIAVCPNLKKFRAFN--LLGQ---EFCTLISKFPLLEDLSLFACSS----FERI  339 (565)
Q Consensus       273 ~~p~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~~~~--i~~~---~l~~l~~~~~~L~~L~L~~C~~----~~~l  339 (565)
                      .+++|++|+++++.+....    ....+..+++|+.|+++.  +++.   .+...+..+++|+.|+|++|.-    ...+
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            3455666666665541110    111244555666555542  3333   3445567788888888888731    1112


Q ss_pred             c-----ccCCcccEEeecCCc
Q 008452          340 T-----ISSNQLKHLSLVHCA  355 (565)
Q Consensus       340 ~-----~~~~~L~~L~L~~C~  355 (565)
                      .     .....|+.|+++++.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHhhhccCCCCCEEECCCCc
Confidence            1     123567777777764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.25  E-value=9.9e-07  Score=73.37  Aligned_cols=102  Identities=16%  Similarity=0.153  Sum_probs=74.7

Q ss_pred             ccCcccccCCCccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCC--ccc-ccc
Q 008452          175 TLPQTVFSANFLTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGL--KLL-CIS  250 (565)
Q Consensus       175 ~lp~~l~~~~~L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l--~~l-~i~  250 (565)
                      .++ .+..+++|++|++++|.+.. ++.+..+++|++|+++++.++.  +.. +..+|+|+.|++++|...  ..+ .+.
T Consensus        12 ~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~   87 (124)
T d1dcea3          12 VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNNRLQQSAAIQPLV   87 (124)
T ss_dssp             SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred             CCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCCccCCCCCchhhc
Confidence            444 36778899999999999988 6678899999999999999832  222 678999999999998752  222 345


Q ss_pred             cCcccceeEccccc-ccc----cchhhcCccccEe
Q 008452          251 GAHKLKILTMETLS-SEL----KGVKIVASSLQQL  280 (565)
Q Consensus       251 ~~~~L~~L~l~~c~-~~l----~~i~~~~p~L~~L  280 (565)
                      .+++|+.|+++++. ...    ..+....|+|+.+
T Consensus        88 ~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          88 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            68999999999875 111    1122246777665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.24  E-value=2e-06  Score=84.21  Aligned_cols=115  Identities=21%  Similarity=0.166  Sum_probs=73.0

Q ss_pred             HhCCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcC-
Q 008452          152 IENGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHEC-  230 (565)
Q Consensus       152 ~~~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~c-  230 (565)
                      ...++++|+|+.       .....+|..   .++|++|+|+++.+...+  ..+.+|++|++.++.++.  +    ... 
T Consensus        36 ~~~~l~~LdLs~-------~~L~~lp~~---~~~L~~L~Ls~N~l~~lp--~~~~~L~~L~l~~n~l~~--l----~~lp   97 (353)
T d1jl5a_          36 LDRQAHELELNN-------LGLSSLPEL---PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA--L----SDLP   97 (353)
T ss_dssp             HHHTCSEEECTT-------SCCSCCCSC---CTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC--C----CSCC
T ss_pred             HHcCCCEEEeCC-------CCCCCCCCC---CCCCCEEECCCCCCcccc--cchhhhhhhhhhhcccch--h----hhhc
Confidence            335788888765       234466753   368999999998887622  235689999999887731  1    123 


Q ss_pred             cCCceeEeeecCCCcccccccCcccceeEcccccccccchhhcCccccEeeecCCC
Q 008452          231 HFLEDLNFFECLGLKLLCISGAHKLKILTMETLSSELKGVKIVASSLQQLTLQFPF  286 (565)
Q Consensus       231 p~Le~L~L~~c~~l~~l~i~~~~~L~~L~l~~c~~~l~~i~~~~p~L~~L~l~~~~  286 (565)
                      +.|++|++++|....--....+++|+.|++.++.  +.......+.+..+.+....
T Consensus        98 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~~~~~  151 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS--LKKLPDLPPSLEFIAAGNNQ  151 (353)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSC
T ss_pred             cccccccccccccccccchhhhccceeecccccc--ccccccccccccchhhcccc
Confidence            4699999988864221123447889999988774  33333334455566554443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6.9e-07  Score=83.34  Aligned_cols=80  Identities=9%  Similarity=0.037  Sum_probs=36.6

Q ss_pred             CcEEEEEEeCCCCcCcccccccCcc-cccCCCccEEEecCccCCC---CCcccCCCcCcEEEcCCe-eechHHHHHHHhc
Q 008452          155 GVKELDFQILPDIKDYVHTYTLPQT-VFSANFLTHLRLAGCKLEQ---PCYAMCFLSLKKLHLYGV-YITEQMVQKLLHE  229 (565)
Q Consensus       155 ~l~~L~L~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~---~~~~~~l~~Lk~L~L~~~-~~~~~~l~~ll~~  229 (565)
                      ++++|++..       ..-..+|.. +..+++|++|+|++|.+..   ...+.+++++++|.+..+ .+.. .....+.+
T Consensus        30 ~l~~L~Ls~-------n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~  101 (242)
T d1xwdc1          30 NAIELRFVL-------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQN  101 (242)
T ss_dssp             CCSEEEEES-------CCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-ECTTSEEC
T ss_pred             CCCEEECcC-------CcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc-cccccccc
Confidence            555555554       122234433 2345566666666654433   223445555555555332 1110 01112345


Q ss_pred             CcCCceeEeeecC
Q 008452          230 CHFLEDLNFFECL  242 (565)
Q Consensus       230 cp~Le~L~L~~c~  242 (565)
                      +++|++|.+.++.
T Consensus       102 l~~L~~l~l~~~~  114 (242)
T d1xwdc1         102 LPNLQYLLISNTG  114 (242)
T ss_dssp             CTTCCEEEEESCC
T ss_pred             cccccccccchhh
Confidence            5666666666553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=7.3e-07  Score=83.16  Aligned_cols=88  Identities=15%  Similarity=0.136  Sum_probs=53.5

Q ss_pred             cccCcccccCCCccEEEecCccCCC-CC-cccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc---
Q 008452          174 YTLPQTVFSANFLTHLRLAGCKLEQ-PC-YAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC---  248 (565)
Q Consensus       174 ~~lp~~l~~~~~L~~L~L~~c~l~~-~~-~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~---  248 (565)
                      ..+|..+.  +++++|+|+++.+.. +. .+.++++|++|+|+++.+....-...+.+++.+++|.+..+..+..+.   
T Consensus        21 ~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          21 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence            35555443  468888888887766 33 467788888888877755211011124457777777777665544432   


Q ss_pred             cccCcccceeEcccc
Q 008452          249 ISGAHKLKILTMETL  263 (565)
Q Consensus       249 i~~~~~L~~L~l~~c  263 (565)
                      +.++++|+.|.+.++
T Consensus        99 ~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          99 FQNLPNLQYLLISNT  113 (242)
T ss_dssp             EECCTTCCEEEEESC
T ss_pred             ccccccccccccchh
Confidence            233566677766665

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.4e-07  Score=76.57  Aligned_cols=38  Identities=34%  Similarity=0.600  Sum_probs=35.0

Q ss_pred             CCCcCCCCc----hHHHHHHHcCCChHHHHHHhhcchhhhhh
Q 008452           29 TMDRISDLP----TFIIHHIMSFLPAKEAARASILSKRWEKF   66 (565)
Q Consensus        29 ~~D~is~LP----d~vL~~ILs~L~~~d~vr~s~lSkrWr~l   66 (565)
                      ..|.|+.||    |||+.+|||||+.+|+++++.|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            458899999    59999999999999999999999999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.07  E-value=1.3e-05  Score=78.22  Aligned_cols=75  Identities=15%  Similarity=0.076  Sum_probs=43.1

Q ss_pred             CCcEEEEEEeCCCCcCcccccccCcccccCCCccEEEecCccCCCCCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCC
Q 008452          154 NGVKELDFQILPDIKDYVHTYTLPQTVFSANFLTHLRLAGCKLEQPCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFL  233 (565)
Q Consensus       154 ~~l~~L~L~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~L  233 (565)
                      +++++|+++.       .....+|..   ..+|++|++.++.+...+.  -.++|++|+|+++.+..  +.. ...+++|
T Consensus        58 ~~L~~L~Ls~-------N~l~~lp~~---~~~L~~L~l~~n~l~~l~~--lp~~L~~L~L~~n~l~~--lp~-~~~l~~L  122 (353)
T d1jl5a_          58 PHLESLVASC-------NSLTELPEL---PQSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEK--LPE-LQNSSFL  122 (353)
T ss_dssp             TTCSEEECCS-------SCCSSCCCC---CTTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSS--CCC-CTTCTTC
T ss_pred             CCCCEEECCC-------CCCcccccc---hhhhhhhhhhhcccchhhh--hcccccccccccccccc--ccc-hhhhccc
Confidence            4777777764       223355543   2467777777776654111  12357777777776621  111 3456777


Q ss_pred             ceeEeeecCC
Q 008452          234 EDLNFFECLG  243 (565)
Q Consensus       234 e~L~L~~c~~  243 (565)
                      +.|++.++..
T Consensus       123 ~~L~l~~~~~  132 (353)
T d1jl5a_         123 KIIDVDNNSL  132 (353)
T ss_dssp             CEEECCSSCC
T ss_pred             eeeccccccc
Confidence            7777766643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.04  E-value=2.7e-06  Score=76.43  Aligned_cols=110  Identities=21%  Similarity=0.138  Sum_probs=77.6

Q ss_pred             cccccCcccccCCCccEEEecCccCCC---CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCccc-
Q 008452          172 HTYTLPQTVFSANFLTHLRLAGCKLEQ---PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLL-  247 (565)
Q Consensus       172 ~~~~lp~~l~~~~~L~~L~L~~c~l~~---~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l-  247 (565)
                      ....+|..+.  +++++|+|++|.+..   ...+.++++|++|+|+++.+..- ....+...+.|++|+|++|.. +.+ 
T Consensus        19 ~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l-~~l~   94 (192)
T d1w8aa_          19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI-KEIS   94 (192)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC-CEEC
T ss_pred             CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccccc-cccC
Confidence            3446666553  588999999998864   45667899999999999887221 123456788899999998854 332 


Q ss_pred             --ccccCcccceeEcccccccccch---hh-cCccccEeeecCCCC
Q 008452          248 --CISGAHKLKILTMETLSSELKGV---KI-VASSLQQLTLQFPFE  287 (565)
Q Consensus       248 --~i~~~~~L~~L~l~~c~~~l~~i---~~-~~p~L~~L~l~~~~~  287 (565)
                        .+.++++|+.|+++++.  +..+   .+ ..++|++|+++++.+
T Consensus        95 ~~~F~~l~~L~~L~L~~N~--l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          95 NKMFLGLHQLKTLNLYDNQ--ISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SSSSTTCTTCCEEECCSSC--CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             HHHHhCCCcccccccCCcc--ccccCHHHhcCCccccccccccccc
Confidence              34557888888888884  3333   23 567888888888775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.88  E-value=5.2e-06  Score=74.46  Aligned_cols=119  Identities=15%  Similarity=0.053  Sum_probs=75.2

Q ss_pred             ccEEEecCccCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcc--cccccCcccceeEccc
Q 008452          186 LTHLRLAGCKLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKL--LCISGAHKLKILTMET  262 (565)
Q Consensus       186 L~~L~L~~c~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~--l~i~~~~~L~~L~l~~  262 (565)
                      .+.++.++..+.. |...  .+++++|+|+++.++...-...+.+.++|++|+|.++.....  -.+...++|+.|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4678888888776 4332  368999999999884322233456789999999988865332  1233468888888888


Q ss_pred             cc-ccccchhh-cCccccEeeecCCCCCCCCceeecccccccccccc
Q 008452          263 LS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVVDIAVCPNLKKFRA  307 (565)
Q Consensus       263 c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~~  307 (565)
                      +. ..+..-.+ +.++|++|+++++.+ ....+..+..+++|+.|++
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l-~~i~~~~f~~l~~L~~l~L  133 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCC-CEECTTSSTTCTTCCEEEC
T ss_pred             ccccccCHHHHhCCCcccccccCCccc-cccCHHHhcCCcccccccc
Confidence            84 22222233 578888888888875 2222223344444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.86  E-value=3.4e-07  Score=83.00  Aligned_cols=97  Identities=19%  Similarity=0.091  Sum_probs=59.1

Q ss_pred             CccEEEecCc--cCCC-CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc--cccCcccceeE
Q 008452          185 FLTHLRLAGC--KLEQ-PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC--ISGAHKLKILT  259 (565)
Q Consensus       185 ~L~~L~L~~c--~l~~-~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~--i~~~~~L~~L~  259 (565)
                      .++.+.+.+.  .+.. +..+..+++|++|+|+++.+++  +.. +..+++|+.|+|++|.. +.+.  ...+++|+.|+
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~i-~~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNLI-KKIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEEE-CSCSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCC--ccc-ccCCccccChhhccccc-ccccccccccccccccc
Confidence            4556666553  2322 3456678889999998888832  221 45688888888888853 2221  11135777777


Q ss_pred             cccccccccchh-h-cCccccEeeecCCCC
Q 008452          260 METLSSELKGVK-I-VASSLQQLTLQFPFE  287 (565)
Q Consensus       260 l~~c~~~l~~i~-~-~~p~L~~L~l~~~~~  287 (565)
                      +++|  .+..+. + .+++|+.|++++|.+
T Consensus       100 l~~N--~i~~l~~~~~l~~L~~L~L~~N~i  127 (198)
T d1m9la_         100 ISYN--QIASLSGIEKLVNLRVLYMSNNKI  127 (198)
T ss_dssp             CSEE--ECCCHHHHHHHHHSSEEEESEEEC
T ss_pred             cccc--cccccccccccccccccccccchh
Confidence            7776  333332 2 566777777776654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00014  Score=62.48  Aligned_cols=36  Identities=22%  Similarity=0.116  Sum_probs=18.1

Q ss_pred             CcccceeEccccc-ccccchhhcCccccEeeecCCCC
Q 008452          252 AHKLKILTMETLS-SELKGVKIVASSLQQLTLQFPFE  287 (565)
Q Consensus       252 ~~~L~~L~l~~c~-~~l~~i~~~~p~L~~L~l~~~~~  287 (565)
                      +++|+.|+++++. ..+..-.+...+|+.|++++|++
T Consensus        79 l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          79 TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cccccceeccCCCCcccChhhhccccccccccCCCcc
Confidence            4555555555552 11111122344677777777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0002  Score=61.83  Aligned_cols=92  Identities=16%  Similarity=0.105  Sum_probs=57.6

Q ss_pred             HHHHHHHhcCcCCceeEeeecCCCc--ccc--cccCcccceeEccccc-ccccchhh-cCccccEeeecCCCCCCCCcee
Q 008452          221 QMVQKLLHECHFLEDLNFFECLGLK--LLC--ISGAHKLKILTMETLS-SELKGVKI-VASSLQQLTLQFPFEGQGTPVV  294 (565)
Q Consensus       221 ~~l~~ll~~cp~Le~L~L~~c~~l~--~l~--i~~~~~L~~L~l~~c~-~~l~~i~~-~~p~L~~L~l~~~~~~~~~~~~  294 (565)
                      ..+..+...||.|++|+|++|....  .+.  +..+++|+.|+++++. ..+..+.. ...+|+.|++++|++....   
T Consensus        55 ~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~---  131 (162)
T d1koha1          55 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF---  131 (162)
T ss_dssp             HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS---
T ss_pred             hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc---
Confidence            3455566789999999999996522  111  2237888888888885 33444333 5667888888888751110   


Q ss_pred             ecccccccccccccccchHHHHHHhcCCCCcceee
Q 008452          295 DIAVCPNLKKFRAFNLLGQEFCTLISKFPLLEDLS  329 (565)
Q Consensus       295 ~l~~~~~L~~L~~~~i~~~~l~~l~~~~~~L~~L~  329 (565)
                                    .........++..+|+|+.|+
T Consensus       132 --------------~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         132 --------------RDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             --------------SSHHHHHHHHHTTSTTCCEET
T ss_pred             --------------ccchhHHHHHHHHCCCCCEEC
Confidence                          011234455667778887775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00036  Score=59.75  Aligned_cols=90  Identities=16%  Similarity=0.011  Sum_probs=65.8

Q ss_pred             ccccCcccccCCCccEEEecCc-cCCC--CCcccCCCcCcEEEcCCeeechHHHHHHHhcCcCCceeEeeecCCCcccc-
Q 008452          173 TYTLPQTVFSANFLTHLRLAGC-KLEQ--PCYAMCFLSLKKLHLYGVYITEQMVQKLLHECHFLEDLNFFECLGLKLLC-  248 (565)
Q Consensus       173 ~~~lp~~l~~~~~L~~L~L~~c-~l~~--~~~~~~l~~Lk~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~l~~l~-  248 (565)
                      ....|..+...++|++|.+.++ .+..  +..+.++++|+.|+|+++.+..- -...+...++|++|+|++|... .+. 
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i-~~~~f~~l~~L~~L~Ls~N~l~-~l~~   97 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNALE-SLSW   97 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCCS-CCCS
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCc-ccccccccccccceeccCCCCc-ccCh
Confidence            3456667777889999999876 4665  45688999999999999988211 0234677999999999999752 221 


Q ss_pred             -cccCcccceeEccccc
Q 008452          249 -ISGAHKLKILTMETLS  264 (565)
Q Consensus       249 -i~~~~~L~~L~l~~c~  264 (565)
                       +....+|+.|++++++
T Consensus        98 ~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          98 KTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             TTTCSCCCCEEECCSSC
T ss_pred             hhhccccccccccCCCc
Confidence             1123679999999875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.60  E-value=0.00088  Score=57.87  Aligned_cols=39  Identities=10%  Similarity=0.227  Sum_probs=21.6

Q ss_pred             CCCcCcEEEcCCee-echHHHHHH---HhcCcCCceeEeeecC
Q 008452          204 CFLSLKKLHLYGVY-ITEQMVQKL---LHECHFLEDLNFFECL  242 (565)
Q Consensus       204 ~l~~Lk~L~L~~~~-~~~~~l~~l---l~~cp~Le~L~L~~c~  242 (565)
                      +.+.|++|+|+++. ++++++..+   +..++.|++|+|++|.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~   55 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA   55 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc
Confidence            34666667776543 444444333   4455666666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.56  E-value=0.0017  Score=56.01  Aligned_cols=60  Identities=15%  Similarity=0.130  Sum_probs=30.0

Q ss_pred             CCCccEEEecCc-cCCC------CCcccCCCcCcEEEcCCeeechHH---HHHHHhcCcCCceeEeeecC
Q 008452          183 ANFLTHLRLAGC-KLEQ------PCYAMCFLSLKKLHLYGVYITEQM---VQKLLHECHFLEDLNFFECL  242 (565)
Q Consensus       183 ~~~L~~L~L~~c-~l~~------~~~~~~l~~Lk~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~c~  242 (565)
                      .++|++|+|+++ .+..      .......+.|++|+|++|.+++.+   +...+..++.|++|+|++|.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            345555555553 2322      112234455666666666654332   33344556666666666664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.21  E-value=0.0065  Score=51.93  Aligned_cols=18  Identities=11%  Similarity=0.157  Sum_probs=12.0

Q ss_pred             HHHHhcCCCCcceeeccc
Q 008452          315 FCTLISKFPLLEDLSLFA  332 (565)
Q Consensus       315 l~~l~~~~~~L~~L~L~~  332 (565)
                      +...+...++|++|++..
T Consensus       124 La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHhCCCcCEEeCcC
Confidence            444556777777777765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.93  E-value=0.0049  Score=52.75  Aligned_cols=105  Identities=14%  Similarity=0.131  Sum_probs=53.4

Q ss_pred             cCCCccEEEecCc-cCCC------CCcccCCCcCcEEEcCCeeechHHHH---HHHhcCcCCceeEeeecCCCcc----c
Q 008452          182 SANFLTHLRLAGC-KLEQ------PCYAMCFLSLKKLHLYGVYITEQMVQ---KLLHECHFLEDLNFFECLGLKL----L  247 (565)
Q Consensus       182 ~~~~L~~L~L~~c-~l~~------~~~~~~l~~Lk~L~L~~~~~~~~~l~---~ll~~cp~Le~L~L~~c~~l~~----l  247 (565)
                      +.++|++|+|+++ .+..      .......++|++|+|+++.+++.+..   ..+..++.|+.|++.+|..-..    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            3456777777663 3433      11123566777777777766544433   3445567777777776654111    1


Q ss_pred             --ccccCcccceeEccccc-----ccccchh--h-cCccccEeeecCCC
Q 008452          248 --CISGAHKLKILTMETLS-----SELKGVK--I-VASSLQQLTLQFPF  286 (565)
Q Consensus       248 --~i~~~~~L~~L~l~~c~-----~~l~~i~--~-~~p~L~~L~l~~~~  286 (565)
                        .+...++|+.+++..+.     .+...+.  + .+++|+.|++..+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence              12224666665554332     1111221  1 45666666665443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0009  Score=57.48  Aligned_cols=60  Identities=23%  Similarity=0.137  Sum_probs=34.3

Q ss_pred             cCCCccEEEecCccCCCC----CcccCCCcCcEEEcCCeee-chHHHHHHHhcCcCCceeEeeecCC
Q 008452          182 SANFLTHLRLAGCKLEQP----CYAMCFLSLKKLHLYGVYI-TEQMVQKLLHECHFLEDLNFFECLG  243 (565)
Q Consensus       182 ~~~~L~~L~L~~c~l~~~----~~~~~l~~Lk~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~  243 (565)
                      .+++|++|+|++|.+...    ..+..+++|+.|+|++|.+ +-..+.. + ..+.|++|++.+|+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Npl  127 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNSL  127 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTSTT
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCCc
Confidence            356777777777766651    1234567777777777776 3233332 2 234566666666654