Citrus Sinensis ID: 008457
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 564 | 2.2.26 [Sep-21-2011] | |||||||
| Q8TCB7 | 284 | Methyltransferase-like pr | yes | no | 0.441 | 0.876 | 0.447 | 3e-55 | |
| Q6AXU8 | 287 | Methyltransferase-like pr | yes | no | 0.413 | 0.811 | 0.462 | 3e-54 | |
| Q8BVH9 | 282 | Methyltransferase-like pr | yes | no | 0.413 | 0.826 | 0.458 | 1e-53 | |
| Q5RDV8 | 282 | Methyltransferase-like pr | yes | no | 0.420 | 0.840 | 0.454 | 3e-53 | |
| O74386 | 248 | Uncharacterized methyltra | yes | no | 0.416 | 0.947 | 0.422 | 7e-47 | |
| Q08641 | 628 | Uncharacterized methyltra | yes | no | 0.413 | 0.371 | 0.401 | 4e-45 | |
| Q86BS6 | 325 | Methyltransferase-like pr | yes | no | 0.441 | 0.766 | 0.384 | 5e-44 | |
| A8KBL7 | 353 | Methyltransferase-like pr | no | no | 0.406 | 0.648 | 0.357 | 3e-43 | |
| Q9P7L6 | 307 | Uncharacterized methyltra | no | no | 0.404 | 0.742 | 0.372 | 4e-42 | |
| Q5M8E6 | 337 | Methyltransferase-like pr | no | no | 0.406 | 0.679 | 0.361 | 9e-42 |
| >sp|Q8TCB7|METL6_HUMAN Methyltransferase-like protein 6 OS=Homo sapiens GN=METTL6 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 156/257 (60%), Gaps = 8/257 (3%)
Query: 11 IGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRY 70
+ EE KL+ T VS F + K E+EA+K WDLFYKR+ FFKDRH+ +E+
Sbjct: 14 LTSEEEEKLK---RDQTLVSDFKQQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEEL 70
Query: 71 FSGAGRKD----VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRV 126
S +D +LE GCG GN +FPL+ P++F YACDFSPRA+ V + + R
Sbjct: 71 RSCREFEDQKLTMLEAGCGVGNCLFPLLEEDPNIFAYACDFSPRAIEYVKQNPLYDTERC 130
Query: 127 STFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186
F CDL DDL + P S+D+V ++FVLSAV P+KM LVLQNI KVLKP VLFRDY
Sbjct: 131 KVFQCDLTKDDLLDHVPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVLFRDY 190
Query: 187 AIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVE 246
+ D A R K+ ENFYVR DGTR+++F++DFL LF + G++ ++
Sbjct: 191 GLYDHAMLRFKAS-SKLGENFYVRQDGTRSYFFTDDFLAQLFMDTGYEEVVNEYVFRETV 249
Query: 247 NRARELVMNRRWVQAVF 263
N+ L + R ++Q+ F
Sbjct: 250 NKKEGLCVPRVFLQSKF 266
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q6AXU8|METL6_RAT Methyltransferase-like protein 6 OS=Rattus norvegicus GN=Mettl6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 149/240 (62%), Gaps = 7/240 (2%)
Query: 29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWG-----RYFSGAGRKDVLEVG 83
VS F + K E+EA+K WDLFYKR+ FFKDRH+ +E+ R + G + +LE G
Sbjct: 29 VSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREYEGQ-KLTLLEAG 87
Query: 84 CGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143
CG GN +FPL+ ++F YACDFSPRAV+ V H + R F CDL DDL I
Sbjct: 88 CGVGNCLFPLLEEDSNIFAYACDFSPRAVDYVKQHPLYNAERCKVFQCDLTRDDLLDHIP 147
Query: 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKI 203
P S+D VT++FVLSAV PEKM LVL N+ KVLKP VLFRDY + D A R K+
Sbjct: 148 PESVDAVTLIFVLSAVHPEKMHLVLLNVYKVLKPGRSVLFRDYGLNDHAMLRFKA-GSKL 206
Query: 204 SENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 263
ENFYVR DGTR+++F+++FL LF + G++ ++ N+ L + R ++Q+ F
Sbjct: 207 GENFYVRQDGTRSYFFTDEFLAKLFVDAGYEEVVNEYVFRETVNKKEGLCVPRVFLQSKF 266
|
Probable methyltransferase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8BVH9|METL6_MOUSE Methyltransferase-like protein 6 OS=Mus musculus GN=Mettl6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 149/240 (62%), Gaps = 7/240 (2%)
Query: 29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWG-----RYFSGAGRKDVLEVG 83
VS F + K E+EA+K WDLFYKR+ FFKDRH+ +E+ R + G + +LE G
Sbjct: 29 VSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREYEGQ-KLTLLEAG 87
Query: 84 CGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143
CG GN +FPL+ ++F YACDFSPRAV+ V H + R F CDL DDL +
Sbjct: 88 CGVGNCLFPLLEEDLNLFAYACDFSPRAVDYVKQHPLYNAERCKVFQCDLTRDDLLDHVP 147
Query: 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKI 203
P S+D VT++FVLSAV PEKM LVL N+ KVLKP VLFRDY + D A R K+
Sbjct: 148 PESVDAVTLIFVLSAVHPEKMRLVLLNVYKVLKPGRSVLFRDYGLNDHAMLRFKA-GSKL 206
Query: 204 SENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 263
ENFYVR DGTR+++F+++FL LF + G++ ++ N+ L + R ++Q+ F
Sbjct: 207 GENFYVRQDGTRSYFFTDEFLAQLFVDAGYEEVVNEYVFRETVNKKEGLCVPRVFLQSKF 266
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RDV8|METL6_PONAB Methyltransferase-like protein 6 OS=Pongo abelii GN=METTL6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 149/242 (61%), Gaps = 5/242 (2%)
Query: 26 NTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD----VLE 81
T VS F + K E+EA+K WDLFYKR+ FFKDRH+ +E+ S +D +LE
Sbjct: 26 QTLVSDFKQQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREFEDQKLTMLE 85
Query: 82 VGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQ 141
G G GN +FPL+ P++F YACDFSPRAV V + + R F CDL DDL
Sbjct: 86 AGRGVGNCLFPLLEEDPNIFAYACDFSPRAVEYVKQNPLYDTERCKVFQCDLTKDDLLDH 145
Query: 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQ 201
+ P S+D+V ++FVLSAV P+KM LVLQNI KVLKP VLFRDY + D A R
Sbjct: 146 VPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVLFRDYGLYDHAMLRFKA-GS 204
Query: 202 KISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQA 261
K+ ENFYVR DGTR+++F+++FL LF + G++ ++ N+ L + R ++Q+
Sbjct: 205 KLGENFYVRQDGTRSYFFTDEFLAQLFMDTGYEEVVNEYVFRETVNKKEGLCVPRVFLQS 264
Query: 262 VF 263
F
Sbjct: 265 KF 266
|
Probable methyltransferase. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O74386|YNVB_SCHPO Uncharacterized methyltransferase C3H7.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3H7.11 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 148/239 (61%), Gaps = 4/239 (1%)
Query: 29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK--DVLEVGCGA 86
+S FW +KY++E+KK WD FYKR++ RFFKDRH+LD+E+ YF + +LEVGCG
Sbjct: 7 LSDFWVEKYKKESKKSWDKFYKRNETRFFKDRHWLDREFDCYFGLPDKLPLTILEVGCGV 66
Query: 87 GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS 146
GN ++PL+ P++ +Y CDFSPRA++ V H + E RV FV D+ D L + +
Sbjct: 67 GNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSCYNENRVFPFVNDITEDSLLEVLGSAC 126
Query: 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL--TGKDQKIS 204
ID +T +FVLSA+ EK ++N+ V+KP G+++FRDY GD AQE+ +G I
Sbjct: 127 IDTLTAIFVLSAIPREKQLRSIKNLASVIKPGGHLVFRDYCDGDFAQEKFMTSGDPSMID 186
Query: 205 ENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 263
E +VR DGT + +F + + K GF + L + V+NR R L M R ++Q V+
Sbjct: 187 EQTFVRQDGTLSLFFREEDIAEWMKSAGFGLVTLDRVNRTVDNRKRNLNMKRTFLQGVW 245
|
Probable methyltransferase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q08641|AB140_YEAST Uncharacterized methyltransferase ABP140 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ABP140 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 142/244 (58%), Gaps = 11/244 (4%)
Query: 29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD-----VLEVG 83
V F + Y +YWD+FYK +++ FFKDR +L E+ ++ RKD + E+G
Sbjct: 383 VPEFDKKLYNENPARYWDIFYKNNKENFFKDRKWLQIEFPILYAST-RKDAEPVTIFEIG 441
Query: 84 CGAGNTIFPLIA--AYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD--LS 139
CGAGNT FP++ ++ + A DF+PRAV LV + F V DL + D L
Sbjct: 442 CGAGNTFFPILKDNENENLRIIAADFAPRAVELVKNSEQFNPKYGHATVWDLANPDGNLP 501
Query: 140 RQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGK 199
+ P S+DI M+FV SA++P + + N+ K+LKP G ++FRDY DL Q R K
Sbjct: 502 DGVEPHSVDIAVMIFVFSALAPNQWDQAMDNLHKILKPGGKIIFRDYGAYDLTQVRFK-K 560
Query: 200 DQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWV 259
++ + ENFYVRGDGTR ++FS + L +F + F ++G + + NR R+L M R WV
Sbjct: 561 NRILEENFYVRGDGTRVYFFSEEKLREIFTKKYFLENKIGTDRRLLVNRKRQLKMYRCWV 620
Query: 260 QAVF 263
QAVF
Sbjct: 621 QAVF 624
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Potential methyltransferase (By similarity). Binds F-actin and shows weak F-actin cross-linking activity. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q86BS6|METL_DROME Methyltransferase-like protein OS=Drosophila melanogaster GN=metl PE=1 SV=2 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/260 (38%), Positives = 146/260 (56%), Gaps = 11/260 (4%)
Query: 13 KEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFS 72
+E A K + + + +++++ +A K+WD FY H +RFFKDRH+L E+
Sbjct: 64 QELAAKAAVAKNSTSKMEAEQKERFQTDAPKFWDSFYGIHDNRFFKDRHWLFTEFPELAP 123
Query: 73 GAGRKDVL------EVGCGAGNTIFPLI--AAYPDVFVYACDFSPRAVNLVMTHKDFTET 124
A VL E+GCG GNTI PL+ ++ P + V+ CDFS RA+ ++ + + F E
Sbjct: 124 LAADSAVLQPRSIFELGCGVGNTILPLLQYSSEPQLKVFGCDFSARAIEILRSQRQFDEK 183
Query: 125 RVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184
R FV D D +S DI+ M+FVLSA+ P+KM VL N + L+P G +LFR
Sbjct: 184 RCEVFVMDATLDHWQVPFEENSQDIIVMIFVLSAIEPKKMQRVLDNCYRYLRPGGLLLFR 243
Query: 185 DYAIGDLAQERL-TGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCK 243
DY DLAQ R +GK + +NFYVRGDGT ++F+ + L + + G E+L + +
Sbjct: 244 DYGRYDLAQLRFKSGK--CMEDNFYVRGDGTMVYFFTEEELRGMMTQAGLQEEQLIVDRR 301
Query: 244 QVENRARELVMNRRWVQAVF 263
NR R L M R W+Q F
Sbjct: 302 LQVNRCRGLKMYRVWIQTKF 321
|
Probable methyltransferase. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A8KBL7|MEL2A_DANRE Methyltransferase-like protein 2-A OS=Danio rerio GN=mettl2a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 147/266 (55%), Gaps = 37/266 (13%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEW------GRYFSGAGRKD--------- 78
+++++ A +YW+ FY H++RFFKDRH+L E+ ++ GA K+
Sbjct: 82 QEEFDNRANEYWNDFYTIHENRFFKDRHWLFTEFPELAPQQKHLRGAEEKESLEHMLNGE 141
Query: 79 -------------------VLEVGCGAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMT 117
+LEVGCG GNT+FP++ P +FVY CDFS AV+LV +
Sbjct: 142 DISLNPTHDEFPGASASYRILEVGCGVGNTVFPILKTNNDPGLFVYCCDFSSTAVDLVKS 201
Query: 118 HKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKP 177
+ ++ +R FV D+ + + S+D++ ++FVLSA+ PEKM + + ++LKP
Sbjct: 202 NPEYDPSRCHAFVHDMSDESGEYPMPDHSLDVIVLIFVLSALHPEKMQKSINRLGRLLKP 261
Query: 178 TGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE 237
G +L RDY D+AQ R K + +SENFYVRGDGTR ++F+ D L LF G + +
Sbjct: 262 GGVLLLRDYGRYDMAQLRFK-KGRCLSENFYVRGDGTRVYFFTQDELHDLFSSAGLEKLQ 320
Query: 238 LGLCCKQVENRARELVMNRRWVQAVF 263
+ + NR ++L M R WVQ +
Sbjct: 321 NLVDRRLQVNRGKQLTMYRVWVQCKY 346
|
Probable methyltransferase. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9P7L6|METL_SCHPO Uncharacterized methyltransferase-like protein SPBC21C3.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21C3.07c PE=3 SV=2 | Back alignment and function description |
|---|
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 146/236 (61%), Gaps = 8/236 (3%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFS----GAGRKDVLEVGCGAGNT 89
+D Y ++YWD FY +++ +FF +R ++ +E+ AG K +LE+GCGAGNT
Sbjct: 72 KDAYMTHPERYWDQFYGKNEGKFFMNRRWIAQEFPELLDLLKEDAGEKSILEIGCGAGNT 131
Query: 90 IFPLIA--AYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSI 147
I+P++ ++ ++A D+S +A+++V + + S V DL DL R I +SI
Sbjct: 132 IWPILKENKNSNLKIFAVDYSEKAIDVVKQNPLYDAKFCSASVWDLAGSDLLRSIEEASI 191
Query: 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENF 207
D +T++F SA+SP++ ++N+ ++LKP G +LFRDY DL Q R K++ +SENF
Sbjct: 192 DAITLIFCFSALSPDQWQQAIENLYRLLKPGGLILFRDYGRLDLTQLR-AKKNRILSENF 250
Query: 208 YVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 263
Y+RGDGTR +Y +N+ L +F +N F + + G+ + + NR + + M R W+QA F
Sbjct: 251 YIRGDGTRVYYMTNEELVDVFGKN-FKIIQNGVDKRLIVNRKKRVKMYRCWLQAKF 305
|
Potential methyltransferase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5M8E6|METL2_XENTR Methyltransferase-like protein 2 OS=Xenopus tropicalis GN=mettl2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (435), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 147/268 (54%), Gaps = 39/268 (14%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEW-----------------GRYFSGAG- 75
+++YE +A +WD FY H++RFFKDRH+L E+ G+ G
Sbjct: 55 QEEYENKASNFWDDFYTIHENRFFKDRHWLFTEFPELSSRSSTQTGTESQEGQVMQLNGC 114
Query: 76 -----RKDV-------------LEVGCGAGNTIFPLIA--AYPDVFVYACDFSPRAVNLV 115
R DV +EVGCG GNT+FP++ P +FVY CDFS AV LV
Sbjct: 115 QEETERADVENPFPGASATYRIMEVGCGVGNTVFPILQNNTDPGLFVYCCDFSSTAVELV 174
Query: 116 MTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVL 175
+++ ++ +R FV D+ + S + S+D++ ++FVLSA++P KM V+ + +L
Sbjct: 175 KSNELYSPSRCFAFVHDVSDEQSSFPMPEHSLDVIVLIFVLSAINPAKMQNVISRLSSLL 234
Query: 176 KPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDV 235
KP G +L RDY D+AQ R K + ++ENFYVRGDGTR ++F+ D L +LF G
Sbjct: 235 KPGGCILLRDYGRYDMAQLRFK-KGRCLAENFYVRGDGTRVYFFTQDDLDTLFISAGLQK 293
Query: 236 EELGLCCKQVENRARELVMNRRWVQAVF 263
+ + + NR ++L M R W+Q +
Sbjct: 294 VQNTVDRRLQVNRGKQLTMYRVWIQCKY 321
|
Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 564 | ||||||
| 343887267 | 564 | methyltransferase [Citrus unshiu] | 1.0 | 1.0 | 0.987 | 0.0 | |
| 298204822 | 562 | unnamed protein product [Vitis vinifera] | 0.976 | 0.980 | 0.729 | 0.0 | |
| 224088796 | 557 | predicted protein [Populus trichocarpa] | 0.966 | 0.978 | 0.722 | 0.0 | |
| 225470654 | 562 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.980 | 0.725 | 0.0 | |
| 359490040 | 562 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.980 | 0.722 | 0.0 | |
| 298204810 | 556 | unnamed protein product [Vitis vinifera] | 0.957 | 0.971 | 0.724 | 0.0 | |
| 449447139 | 554 | PREDICTED: uncharacterized protein LOC10 | 0.955 | 0.972 | 0.684 | 0.0 | |
| 297822127 | 564 | hypothetical protein ARALYDRAFT_481476 [ | 0.980 | 0.980 | 0.650 | 0.0 | |
| 356554100 | 585 | PREDICTED: uncharacterized protein LOC10 | 0.971 | 0.936 | 0.664 | 0.0 | |
| 42570317 | 565 | S-adenosyl-L-methionine-dependent methyl | 0.968 | 0.966 | 0.652 | 0.0 |
| >gi|343887267|dbj|BAK61813.1| methyltransferase [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 1161 bits (3003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/564 (98%), Positives = 560/564 (99%)
Query: 1 MESSNAPNAGIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDR 60
MESSNAPNAGIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDR
Sbjct: 1 MESSNAPNAGIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDR 60
Query: 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD 120
HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFV+ACDFSPRAVNLVMTHKD
Sbjct: 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVHACDFSPRAVNLVMTHKD 120
Query: 121 FTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGY 180
FTET VSTFVCDL SDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGY
Sbjct: 121 FTETHVSTFVCDLTSDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGY 180
Query: 181 VLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240
VLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL
Sbjct: 181 VLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240
Query: 241 CCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEP 300
CCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEAS++VDIFNQAIIEPDVAANTLKEP
Sbjct: 241 CCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEASIKVDIFNQAIIEPDVAANTLKEP 300
Query: 301 MNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWES 360
MNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRD SFKIEVLSKEYQHTCRSTGLMLWES
Sbjct: 301 MNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDHSFKIEVLSKEYQHTCRSTGLMLWES 360
Query: 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVT 420
AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVT
Sbjct: 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVT 420
Query: 421 ANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKEL 480
ANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKEL
Sbjct: 421 ANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKEL 480
Query: 481 TASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISS 540
TASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESII S
Sbjct: 481 TASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIIGS 540
Query: 541 WFSENGHEVYLPSPALNIMYFQVE 564
WFSENGHEVYLPSPALNIMYFQVE
Sbjct: 541 WFSENGHEVYLPSPALNIMYFQVE 564
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204822|emb|CBI25655.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/565 (72%), Positives = 477/565 (84%), Gaps = 14/565 (2%)
Query: 11 IGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRY 70
+ +++ +LQIY T +TGVSPFWR+KYEREAKKYWD+FYKRHQDRFFKDRHYLDKEWG Y
Sbjct: 1 MAEQQPSRLQIYSTSSTGVSPFWREKYEREAKKYWDVFYKRHQDRFFKDRHYLDKEWGHY 60
Query: 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFV 130
FSGAGRK +LEVGCGAGNTIFPL+A YPD+FV+ACDFSPRAV+LV THKDFTE RVS FV
Sbjct: 61 FSGAGRKVILEVGCGAGNTIFPLVATYPDIFVHACDFSPRAVDLVKTHKDFTENRVSAFV 120
Query: 131 CDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190
CDL DDLS ISPSS+DI+TM+FVLSAVSPEKM LVLQNI+KV+KP GYVLFRDYA GD
Sbjct: 121 CDLTVDDLSEHISPSSVDIITMIFVLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGD 180
Query: 191 LAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRAR 250
LAQER + KDQKISENFYVRGDGTRAFYFS++FLTSLFKENGFDVEELG CCKQVENR+R
Sbjct: 181 LAQERFSCKDQKISENFYVRGDGTRAFYFSDEFLTSLFKENGFDVEELGFCCKQVENRSR 240
Query: 251 ELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAA-----------NTLKE 299
E+VMNRRW+QAVF SS G SS E++ + D+ Q +EP ++ N+ KE
Sbjct: 241 EIVMNRRWLQAVFHSSDGLKSSYTESAFKFDL-CQGNVEPISSSRNSDQLCRSEENSAKE 299
Query: 300 PMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWE 359
ND EVDMSEG+AFEMFG+S D E+IEV+ + +FKI+VLSKEYQHTC+STGLMLWE
Sbjct: 300 LANDFEVDMSEGMAFEMFGISHSSD-EIIEVDAGNWNFKIKVLSKEYQHTCKSTGLMLWE 358
Query: 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNV 419
SA LMA+VLA+NPT+VAGK+VLELGCGCGGICSMV+A SAD VV+TDGD+ ALD+LA+NV
Sbjct: 359 SARLMASVLAQNPTVVAGKRVLELGCGCGGICSMVSARSADFVVSTDGDAKALDMLAENV 418
Query: 420 TANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKE 479
+NL+ PFL KLITKRLEWGNRDHIEAIKE N+EGFEVI+GTDV+YIPEAILPLFATAKE
Sbjct: 419 ASNLQKPFLDKLITKRLEWGNRDHIEAIKELNDEGFEVIIGTDVTYIPEAILPLFATAKE 478
Query: 480 LTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIIS 539
L SSN+ RE +PA ILCH+ R+VDEPS+LSAA++ GFRLVDKWP+ S S+SIIS
Sbjct: 479 LI-SSNRDAREIWKPALILCHVLRRVDEPSILSAASKFGFRLVDKWPTSIPTSSSQSIIS 537
Query: 540 SWFSENGHEVYLPSPALNIMYFQVE 564
SWF E E +P+ ALNIMYF E
Sbjct: 538 SWFLEKSSEECIPTTALNIMYFHSE 562
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088796|ref|XP_002308544.1| predicted protein [Populus trichocarpa] gi|222854520|gb|EEE92067.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/547 (72%), Positives = 463/547 (84%), Gaps = 2/547 (0%)
Query: 18 KLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK 77
K QIY T NTGV+PFW++KYER+AKKYWD+FYKRHQD+FFKDRHYLDKEWG+YF+G R+
Sbjct: 13 KFQIYSTANTGVTPFWKEKYERDAKKYWDVFYKRHQDKFFKDRHYLDKEWGQYFAGKERR 72
Query: 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD 137
VLEVGCGAGNTIFPL+A YP++FV+ACDFSPRAVNLV THKD+ ET V FVCDL DD
Sbjct: 73 VVLEVGCGAGNTIFPLVATYPNIFVHACDFSPRAVNLVKTHKDYLETCVGAFVCDLTVDD 132
Query: 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT 197
LS++ISPSS+DIVTM+FVLSAVSPEKM LVLQNIKKV+KP GYVL RDYA+GDLAQERLT
Sbjct: 133 LSKEISPSSVDIVTMIFVLSAVSPEKMPLVLQNIKKVMKPNGYVLLRDYAVGDLAQERLT 192
Query: 198 GKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRR 257
KDQ+ISENFYVRGDGTRAFYFSN+FLTSLFK+NGFDVEELGLCCKQVENR+RE+VMNRR
Sbjct: 193 SKDQQISENFYVRGDGTRAFYFSNEFLTSLFKDNGFDVEELGLCCKQVENRSREIVMNRR 252
Query: 258 WVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFEMF 317
W+QAVF S + S + S + Q ++ +V +T + P N+ E+DMSEGVA EMF
Sbjct: 253 WIQAVFRFSDSSNYSVSKESAIKEALCQENVKSNVKESTSQYPSNNFEIDMSEGVAAEMF 312
Query: 318 GLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAG 377
G+S DNE+I V+LRD++FKI VLSKEYQHTC+STGLMLWESA +MA VLA NPTIV G
Sbjct: 313 GISPSNDNEVIHVDLRDQNFKINVLSKEYQHTCKSTGLMLWESARMMAMVLAVNPTIVEG 372
Query: 378 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437
+KVLELGCGCGGICSMV+A SADLVVATDGD+ AL+LL+QNV +NL+ P LAKLI KRL
Sbjct: 373 RKVLELGCGCGGICSMVSAKSADLVVATDGDTKALELLSQNVASNLRQPSLAKLIMKRLV 432
Query: 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFI 497
WGN +HIEAIK+ N GFEVI+GTDV+YIPEAILPLFATAKEL + DQ+PA I
Sbjct: 433 WGNTEHIEAIKDLNPGGFEVIIGTDVTYIPEAILPLFATAKELISCDRNG--GDQEPALI 490
Query: 498 LCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSPALN 557
LCHIFR+VDEPS+LSAA+Q GF+LVDKWP ++PS+SI+ SWF ENG E Y+P+ ALN
Sbjct: 491 LCHIFRRVDEPSLLSAASQYGFKLVDKWPLGIPSNPSQSIVGSWFPENGREEYIPNAALN 550
Query: 558 IMYFQVE 564
IMYF ++
Sbjct: 551 IMYFHLQ 557
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470654|ref|XP_002268214.1| PREDICTED: uncharacterized protein LOC100258883 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/565 (72%), Positives = 475/565 (84%), Gaps = 14/565 (2%)
Query: 11 IGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRY 70
+ +++ +LQIY T +TGVSPFWR+KYEREAKKYWD+FYKRHQDRFFKDRHYLDKEWG Y
Sbjct: 1 MAEQQPSRLQIYSTSSTGVSPFWREKYEREAKKYWDVFYKRHQDRFFKDRHYLDKEWGHY 60
Query: 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFV 130
FS GRK +LEVGCGAGNTIFPL+A YPD+FV+ACDFSPRAV+LV THKDFTE RVS FV
Sbjct: 61 FSVTGRKVILEVGCGAGNTIFPLVATYPDIFVHACDFSPRAVDLVKTHKDFTENRVSAFV 120
Query: 131 CDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190
CDL DDLS ISPSS+DI+TM+FVLSAVSPEKM LVLQNI+KV+KP GYVLFRDYA GD
Sbjct: 121 CDLTVDDLSEHISPSSVDIITMIFVLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGD 180
Query: 191 LAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRAR 250
LAQER + KDQKISENFYVRGDGTRAFYFS++FLTSLFKENGFDVEELG CCKQVENR+R
Sbjct: 181 LAQERFSCKDQKISENFYVRGDGTRAFYFSDEFLTSLFKENGFDVEELGFCCKQVENRSR 240
Query: 251 ELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAA-----------NTLKE 299
E+VMNRRW+QAVF SS G SS E++ + D+ Q +EP ++ N+ KE
Sbjct: 241 EIVMNRRWLQAVFHSSDGLKSSYTESAFKFDL-CQGNVEPISSSRNSDQLCRSEENSAKE 299
Query: 300 PMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWE 359
ND EVDMSEG+AFEMFG+S D E+IEV+ + +FKI+VLSKEYQHTC+STGLMLWE
Sbjct: 300 LANDFEVDMSEGMAFEMFGISHSSD-EIIEVDAGNWNFKIKVLSKEYQHTCKSTGLMLWE 358
Query: 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNV 419
SA LMA+VLA+NPT+VAGK+VLELGCGCGGICSMV+A SAD VV+TDGD+ ALD+LA+NV
Sbjct: 359 SARLMASVLAQNPTVVAGKRVLELGCGCGGICSMVSARSADFVVSTDGDAKALDMLAENV 418
Query: 420 TANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKE 479
+NL+ PFL KLITKRLEWGNRDHIEAIKE N+EGFEVI+GTDV+YIPEAILPLFATAKE
Sbjct: 419 ASNLQKPFLDKLITKRLEWGNRDHIEAIKELNDEGFEVIIGTDVTYIPEAILPLFATAKE 478
Query: 480 LTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIIS 539
L SSN+ RE +PA ILCH+ R+VDEPS+LSAA++ GFRLVDKWP+ S S+SIIS
Sbjct: 479 LI-SSNRDAREIWKPALILCHVLRRVDEPSILSAASKFGFRLVDKWPTSIPTSSSQSIIS 537
Query: 540 SWFSENGHEVYLPSPALNIMYFQVE 564
SWF E E +P+ ALNIMYF E
Sbjct: 538 SWFLEKSSEECIPTTALNIMYFHSE 562
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490040|ref|XP_002264245.2| PREDICTED: uncharacterized protein LOC100260809 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/565 (72%), Positives = 473/565 (83%), Gaps = 14/565 (2%)
Query: 11 IGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRY 70
+ +++ +LQIY T +TGVSPFWR+KYEREAKKYWD+FYKRHQDRFFKDRHYLDKEWG Y
Sbjct: 1 MAEQQPSRLQIYSTSSTGVSPFWREKYEREAKKYWDVFYKRHQDRFFKDRHYLDKEWGHY 60
Query: 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFV 130
FS GRK +LEVGCGAGNTIFPL+A YPD+FV+ACDFSPRAV+LV THKDFTE RVS FV
Sbjct: 61 FSVTGRKVILEVGCGAGNTIFPLVATYPDIFVHACDFSPRAVDLVKTHKDFTENRVSAFV 120
Query: 131 CDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190
CDL DDLS ISPSS+DI+TM+FVLSAVSPEKM LVLQNI+KV+KP GYVLFRDYA GD
Sbjct: 121 CDLTVDDLSEHISPSSVDIITMIFVLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGD 180
Query: 191 LAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRAR 250
LAQER + KDQKISENFYVRGDGTRAFYFS++FLTSLFKENGFDVEELG CCKQVENR+R
Sbjct: 181 LAQERFSCKDQKISENFYVRGDGTRAFYFSDEFLTSLFKENGFDVEELGFCCKQVENRSR 240
Query: 251 ELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAA-----------NTLKE 299
E+VMNRRW+QAVF S G SS E++++ D+ Q +EP ++ N+ KE
Sbjct: 241 EIVMNRRWLQAVFHFSDGLKSSYTESAIKFDL-CQGNVEPISSSRNSDQLCRSEENSAKE 299
Query: 300 PMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWE 359
ND EVDMSEG+AFEMFG+S D E+IEV+ + +FKI+VLSKEYQHTC+STGLMLWE
Sbjct: 300 LANDFEVDMSEGMAFEMFGISHSSD-EIIEVDAGNWNFKIKVLSKEYQHTCKSTGLMLWE 358
Query: 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNV 419
SA LMA+VLA+NPT+V GK+VLELGCGCGGICSMV+A SAD VVATDGD+ ALD+LA+NV
Sbjct: 359 SARLMASVLAQNPTVVTGKRVLELGCGCGGICSMVSARSADFVVATDGDAKALDMLAENV 418
Query: 420 TANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKE 479
+NL+ PFL KLITKRLEWGNRDHIEAIKE N+EGFEVI+GT V+YIPEAILPLFATAKE
Sbjct: 419 VSNLQKPFLDKLITKRLEWGNRDHIEAIKELNDEGFEVIIGTGVTYIPEAILPLFATAKE 478
Query: 480 LTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIIS 539
L SSN+ RE +PA ILCH+ R+VDEPS+LSAA++ GFRLVDKWP+ S S+SIIS
Sbjct: 479 LI-SSNRDAREIWKPALILCHVLRRVDEPSILSAASKFGFRLVDKWPTSIPTSSSQSIIS 537
Query: 540 SWFSENGHEVYLPSPALNIMYFQVE 564
SWF E E +P+ ALNIMYF E
Sbjct: 538 SWFLEKSSEECIPTTALNIMYFHSE 562
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204810|emb|CBI25643.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/559 (72%), Positives = 467/559 (83%), Gaps = 19/559 (3%)
Query: 11 IGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRY 70
+ +++ +LQIY T +TGVSPFWR+KYEREAKKYWD+FYKRHQDRFFKDRHYLDKEWG Y
Sbjct: 1 MAEQQPSRLQIYSTSSTGVSPFWREKYEREAKKYWDVFYKRHQDRFFKDRHYLDKEWGHY 60
Query: 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFV 130
FSGAGRK +LEVGCGAGNTIFPL+A YPD+FV+ACDFSPRAV+LV THKDFTE RVS FV
Sbjct: 61 FSGAGRKVILEVGCGAGNTIFPLVATYPDIFVHACDFSPRAVDLVKTHKDFTENRVSAFV 120
Query: 131 CDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190
CDL DDLS ISPSS+DI+TM+FVLSAVSPEKM LVLQNI+KV+KP GYVLFRDYA GD
Sbjct: 121 CDLTVDDLSEHISPSSVDIITMIFVLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGD 180
Query: 191 LAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRAR 250
LAQER + KDQKISENFYVRGDGTRAFYFS++FLTSLFKENGFDVEELG CCKQVENR+R
Sbjct: 181 LAQERFSCKDQKISENFYVRGDGTRAFYFSDEFLTSLFKENGFDVEELGFCCKQVENRSR 240
Query: 251 ELVMNRRWVQAVFCSSGG-----ATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSE 305
E+VMNRRW+QAVF S G ++S + + R + N+ KE ND E
Sbjct: 241 EIVMNRRWLQAVFHFSDGNVEPISSSRNSDQLCRSE------------ENSAKELANDFE 288
Query: 306 VDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMA 365
VDMSEG+AFEMFG+S D E+IEV+ + +FKI+VLSKEYQHTC+STGLMLWESA LMA
Sbjct: 289 VDMSEGMAFEMFGISHSSD-EIIEVDAGNWNFKIKVLSKEYQHTCKSTGLMLWESARLMA 347
Query: 366 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP 425
+VLA+NPT+V GK+VLELGCGCGGICSMV+A SAD VVATDGD+ ALD+LA+NV +NL+
Sbjct: 348 SVLAQNPTVVTGKRVLELGCGCGGICSMVSARSADFVVATDGDAKALDMLAENVVSNLQK 407
Query: 426 PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSN 485
PFL KLITKRLEWGNRDHIEAIKE N+EGFEVI+GT V+YIPEAILPLFATAKEL SSN
Sbjct: 408 PFLDKLITKRLEWGNRDHIEAIKELNDEGFEVIIGTGVTYIPEAILPLFATAKELI-SSN 466
Query: 486 KSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSEN 545
+ RE +PA ILCH+ R+VDEPS+LSAA++ GFRLVDKWP+ S S+SIISSWF E
Sbjct: 467 RDAREIWKPALILCHVLRRVDEPSILSAASKFGFRLVDKWPTSIPTSSSQSIISSWFLEK 526
Query: 546 GHEVYLPSPALNIMYFQVE 564
E +P+ ALNIMYF E
Sbjct: 527 SSEECIPTTALNIMYFHSE 545
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447139|ref|XP_004141326.1| PREDICTED: uncharacterized protein LOC101211005 [Cucumis sativus] gi|449525200|ref|XP_004169606.1| PREDICTED: uncharacterized LOC101211005 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/549 (68%), Positives = 451/549 (82%), Gaps = 10/549 (1%)
Query: 16 APKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAG 75
A K+QIYPT +TGVSPFWR+KYE++AKKYWD+FYK+HQDRFFKDRHYLDKEWG+YF
Sbjct: 15 AQKIQIYPTSSTGVSPFWREKYEKDAKKYWDIFYKKHQDRFFKDRHYLDKEWGQYFCVEE 74
Query: 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS 135
RK VLE+GCGAGNT+FPLIA YP+VF++ACDFSPRAVNLV THKDF E+RV+ FVCDL +
Sbjct: 75 RKVVLEIGCGAGNTVFPLIATYPNVFIHACDFSPRAVNLVKTHKDFNESRVAAFVCDLTA 134
Query: 136 DDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQER 195
DD+S ISPSSID+V M+FVLSAVSPEKMSLVLQN+KKVLKPTG+VLFRDYA GDLAQER
Sbjct: 135 DDVSNHISPSSIDVVMMIFVLSAVSPEKMSLVLQNVKKVLKPTGHVLFRDYATGDLAQER 194
Query: 196 LTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMN 255
KDQKISENFYVRGDGTRAFYFSN+FLTS+FK NGFDV+EL +CCKQVENR+REL+MN
Sbjct: 195 FDCKDQKISENFYVRGDGTRAFYFSNEFLTSMFKANGFDVKELNVCCKQVENRSRELIMN 254
Query: 256 RRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFE 315
RRWVQAVF S AT E + Q EP N + P+ND E+D SEGVA +
Sbjct: 255 RRWVQAVFSVSEFATP---EVKLTAGFSGQVETEPSSKENCSEVPVNDFELDFSEGVAID 311
Query: 316 MFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIV 375
MFG+ +DNE++EV++R +FKI+VLS+E+QHTC+STGLMLWESA LMA+VLA NPTI
Sbjct: 312 MFGIPPSQDNEIVEVDVRGWNFKIKVLSREFQHTCKSTGLMLWESARLMASVLAENPTIC 371
Query: 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435
AGK+VLELGCGCGGICSMVA GSA+LVVATDGDS AL+LL+QNV +NL P FL KLIT+R
Sbjct: 372 AGKRVLELGCGCGGICSMVAVGSANLVVATDGDSSALNLLSQNVNSNLDPHFLTKLITER 431
Query: 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPA 495
LEWGN HIE I+E + EGF+VI+GTDV+Y+ EAILPLF+TAKEL +SS +D + A
Sbjct: 432 LEWGNSIHIETIREISEEGFDVIIGTDVTYVAEAILPLFSTAKELISSS-----KDSESA 486
Query: 496 FILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSPA 555
I CH+ R+VDEP+++S A Q GFRL D W + S+ S+SI+SSWF++ ++ PS A
Sbjct: 487 LIFCHVLRRVDEPTIVSTAHQFGFRLADSWTAGVSSKSSQSIVSSWFADRDWDI--PSTA 544
Query: 556 LNIMYFQVE 564
LNIMYF ++
Sbjct: 545 LNIMYFLLD 553
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822127|ref|XP_002878946.1| hypothetical protein ARALYDRAFT_481476 [Arabidopsis lyrata subsp. lyrata] gi|297324785|gb|EFH55205.1| hypothetical protein ARALYDRAFT_481476 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/558 (65%), Positives = 437/558 (78%), Gaps = 5/558 (0%)
Query: 11 IGKEEAP--KLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWG 68
I +++ P KLQIYPT N GVSPFWR+KYER+AKKYWD+FYK H DRFFKDRHYLDKEW
Sbjct: 8 IEEQQKPIQKLQIYPTANAGVSPFWREKYERDAKKYWDIFYKHHGDRFFKDRHYLDKEWN 67
Query: 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVST 128
YFSG+G+K +LEVGCGAGNTIFPLIA YPD+FVYACDFSPRAV LV H ++TETRV
Sbjct: 68 SYFSGSGKKVILEVGCGAGNTIFPLIATYPDIFVYACDFSPRAVELVKAHDEYTETRVCA 127
Query: 129 FVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188
F CDL D L + ISPSS+DIVTM+FVLSAVSPEKM+ VLQNIKKVLKP G +LFRDYA+
Sbjct: 128 FACDLTGDGLDKHISPSSVDIVTMIFVLSAVSPEKMASVLQNIKKVLKPNGCILFRDYAV 187
Query: 189 GDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENR 248
GDLAQER +GKDQKISENFYVRGDGTRAFYFSN+FL +LF E GF+VE+L +CCKQVENR
Sbjct: 188 GDLAQERFSGKDQKISENFYVRGDGTRAFYFSNEFLETLFSEQGFEVEKLDVCCKQVENR 247
Query: 249 ARELVMNRRWVQAVFCSSGGATSSSEEAS-VRVDIFNQA-IIEPDVAANTLKEPMNDSEV 306
+RELVMNRRWVQA F S G + + S ++D Q I+ KE ++++++
Sbjct: 248 SRELVMNRRWVQATFRRSHGNQNPGDSLSPAKLDKSEQHDSIQSKSEEQERKEIIDNTDI 307
Query: 307 DMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAA 366
D+S+G+A EMFG S +EM V LRD FKI++LSKEYQHTC+STGLMLWESA LMA+
Sbjct: 308 DISDGLAMEMFGASP-SSHEMTVVKLRDSDFKIKLLSKEYQHTCKSTGLMLWESARLMAS 366
Query: 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP 426
VL RNP IV+GK+VLELGCGC GICSMVAA SA+LVVATD D+ AL LL +N+T NL+
Sbjct: 367 VLDRNPNIVSGKRVLELGCGCTGICSMVAARSANLVVATDADTKALTLLTENITMNLQSS 426
Query: 427 FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486
L KL T LEWGN++H E+IK EGFEVI+GTDV+Y+ EAI+PLF TAKEL
Sbjct: 427 LLGKLKTGVLEWGNKEHTESIKRLACEGFEVIIGTDVTYVAEAIIPLFETAKELILRKMG 486
Query: 487 SLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENG 546
L ++PA ILCH+FR+VDEPS+LSAA++ GF+L D+W + + SP +II SWFSE
Sbjct: 487 DLEMQEKPALILCHVFRRVDEPSLLSAASKYGFKLADRWAANSMESPIGNIIDSWFSEKD 546
Query: 547 HEVYLPSPALNIMYFQVE 564
+PS AL+I+YFQ+E
Sbjct: 547 LVAEIPSSALHILYFQME 564
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554100|ref|XP_003545387.1| PREDICTED: uncharacterized protein LOC100789229 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/555 (66%), Positives = 444/555 (80%), Gaps = 7/555 (1%)
Query: 12 GKEEAP----KLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEW 67
G ++AP +LQIYP N+GVSPFWR+KYEREAK+YWD+FYKRH+DRFFKDRHYLDKEW
Sbjct: 30 GDQKAPPQTQRLQIYPNTNSGVSPFWREKYEREAKRYWDVFYKRHKDRFFKDRHYLDKEW 89
Query: 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVS 127
G YFSG GRK +LEVGCGAGNTIFP+IA+ PD FVYACDFSPRA+ LV TH+DF E+ VS
Sbjct: 90 GEYFSGGGRKVILEVGCGAGNTIFPVIASNPDAFVYACDFSPRAIELVKTHEDFKESHVS 149
Query: 128 TFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187
FV DL +DDL +I PSS+DIVTM+F+LSAVSPEKM LVLQNI+KV+KP GYVLFRDYA
Sbjct: 150 AFVSDLTADDLCNEILPSSVDIVTMIFMLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYA 209
Query: 188 IGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVEN 247
GDLAQER + KDQKIS+NFYVRGDGTRA+YFSN+FLT+LFKENGFDV + + CKQVEN
Sbjct: 210 TGDLAQERFSSKDQKISDNFYVRGDGTRAYYFSNEFLTNLFKENGFDVHKHHVYCKQVEN 269
Query: 248 RARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSEVD 307
R+REL+MNRRWVQAVF +++SS + + ++ N+L +NDS VD
Sbjct: 270 RSRELIMNRRWVQAVF-RVSDSSNSSSCIGAEANHLDSGNDNKEIKKNSLNGGLNDSAVD 328
Query: 308 MSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAV 367
+SEGVA +MFG+ + E+IE+NLR +FKI +LSKEYQHTC+STGLMLWESA LMA++
Sbjct: 329 LSEGVAVDMFGVLPSNEYEIIEINLRGWNFKISLLSKEYQHTCKSTGLMLWESARLMASI 388
Query: 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF 427
LA NP IVAGK+VLELGCG GGICSM+AA ADLVVATDGD LD+L +NV +N++P
Sbjct: 389 LAENPNIVAGKRVLELGCGSGGICSMIAARDADLVVATDGDGFTLDILTKNVASNIEPSL 448
Query: 428 LAKLITKRLEWGNRDHIEAIKE-ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486
L KL TK+LEWGN+DHIE+IKE +N GF+VI+GTDV+YIP+AILPLFATAKEL A S
Sbjct: 449 LTKLTTKKLEWGNKDHIESIKEVVSNGGFDVIIGTDVTYIPDAILPLFATAKELIAPSGN 508
Query: 487 SLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENG 546
+D PA ILCHIFR+VDEP++LSAA GFRLVDKWP+ S + S II +WF +N
Sbjct: 509 K-EDDNVPALILCHIFRRVDEPTLLSAAAHFGFRLVDKWPAGTSTNLSHRIIGNWFVDND 567
Query: 547 HEVYLPSPALNIMYF 561
+ LPS ALNI+ F
Sbjct: 568 LKDDLPSTALNILLF 582
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42570317|ref|NP_850075.2| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|20197178|gb|AAC14529.2| hypothetical protein [Arabidopsis thaliana] gi|330252713|gb|AEC07807.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/550 (65%), Positives = 431/550 (78%), Gaps = 4/550 (0%)
Query: 18 KLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK 77
KLQIYPT N GVSPFWRDKYER+AKKYWD+FYK H DRFFKDRHYLDKEW YFS +G+
Sbjct: 17 KLQIYPTANAGVSPFWRDKYERDAKKYWDIFYKHHGDRFFKDRHYLDKEWNSYFSVSGKS 76
Query: 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD 137
+LEVGCGAGNTIFPLIA YPD+FVYACDFSPRAV LV H ++TETRV F CDL D
Sbjct: 77 VILEVGCGAGNTIFPLIATYPDIFVYACDFSPRAVELVKAHDEYTETRVCAFACDLTGDG 136
Query: 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT 197
L + ISPSS+DIVTM+FVLSAVSPEKMS VLQNI+KVLKP G +LFRDYA+GDLAQER +
Sbjct: 137 LDKHISPSSVDIVTMIFVLSAVSPEKMSSVLQNIRKVLKPNGCILFRDYAVGDLAQERFS 196
Query: 198 GKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRR 257
GKDQ+ISENFYVRGDGTRAFYFSN+FL +LF E GF+VEEL +CCKQVENR+RELVMNRR
Sbjct: 197 GKDQRISENFYVRGDGTRAFYFSNEFLETLFSEQGFEVEELDVCCKQVENRSRELVMNRR 256
Query: 258 WVQAVFCSSGGATSSSEEAS-VRVDIFNQA-IIEPDVAANTLKEPMNDSEVDMSEGVAFE 315
WVQA F + G + + + ++D Q I+ KE ++ +++D+S+G+A E
Sbjct: 257 WVQATFRRTNGNKNPCDSLTPAKLDKSEQQDSIQSKSEEQERKEIIDYTDIDISDGLAME 316
Query: 316 MFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIV 375
MFG S +EM V LRD +FKI++LSKEYQHTC+STGLMLWESA LMA+VL RNP IV
Sbjct: 317 MFGASP-SSHEMSVVKLRDSAFKIKLLSKEYQHTCKSTGLMLWESARLMASVLDRNPNIV 375
Query: 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435
+GK+VLELGCGC GICSMVAA SA+LVVATD D+ AL LL +N+T NL+ L KL T
Sbjct: 376 SGKRVLELGCGCTGICSMVAARSANLVVATDADTKALTLLTENITMNLQSSLLGKLKTSV 435
Query: 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASS-NKSLREDQQP 494
LEWGN++HIE+IK EGFEVI+GTDV+Y+ EAI+PLF TAKEL L ++P
Sbjct: 436 LEWGNKEHIESIKRLACEGFEVIMGTDVTYVAEAIIPLFETAKELILRKMGDDLEVQEKP 495
Query: 495 AFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSP 554
A ILCH+FR+VDEPS+LSAA++ GF+L D+W + + SP +II SWFSE +PS
Sbjct: 496 ALILCHVFRRVDEPSLLSAASKFGFKLADRWAANSKESPIGNIIDSWFSEKDLVAEIPSS 555
Query: 555 ALNIMYFQVE 564
AL+I+YFQ+E
Sbjct: 556 ALHILYFQME 565
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 564 | ||||||
| TAIR|locus:2057756 | 565 | AT2G26200 [Arabidopsis thalian | 0.968 | 0.966 | 0.632 | 2.5e-184 | |
| UNIPROTKB|Q8TCB7 | 284 | METTL6 "Methyltransferase-like | 0.436 | 0.866 | 0.452 | 2.1e-52 | |
| RGD|1359565 | 287 | Mettl6 "methyltransferase like | 0.414 | 0.815 | 0.468 | 1.2e-51 | |
| UNIPROTKB|Q6AXU8 | 287 | Mettl6 "Methyltransferase-like | 0.414 | 0.815 | 0.468 | 1.2e-51 | |
| MGI|MGI:1914261 | 282 | Mettl6 "methyltransferase like | 0.414 | 0.829 | 0.464 | 4e-51 | |
| POMBASE|SPBC3H7.11 | 248 | SPBC3H7.11 "actin binding meth | 0.414 | 0.943 | 0.429 | 2.2e-50 | |
| UNIPROTKB|Q5ZHP8 | 370 | METTL2 "Methyltransferase-like | 0.352 | 0.537 | 0.416 | 7.7e-48 | |
| RGD|1310240 | 385 | Mettl2b "methyltransferase lik | 0.326 | 0.477 | 0.422 | 3.3e-47 | |
| UNIPROTKB|Q6P1Q9 | 378 | METTL2B "Methyltransferase-lik | 0.326 | 0.486 | 0.428 | 6.8e-47 | |
| UNIPROTKB|Q0P5B2 | 378 | METTL2 "Methyltransferase-like | 0.356 | 0.531 | 0.402 | 6.8e-47 |
| TAIR|locus:2057756 AT2G26200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1788 (634.5 bits), Expect = 2.5e-184, P = 2.5e-184
Identities = 348/550 (63%), Positives = 413/550 (75%)
Query: 18 KLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK 77
KLQIYPT N GVSPFWRDKYER+AKKYWD+FYK H DRFFKDRHYLDKEW YFS +G+
Sbjct: 17 KLQIYPTANAGVSPFWRDKYERDAKKYWDIFYKHHGDRFFKDRHYLDKEWNSYFSVSGKS 76
Query: 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD 137
+LEVGCGAGNTIFPLIA YPD+FVYACDFSPRAV LV H ++TETRV F CDL D
Sbjct: 77 VILEVGCGAGNTIFPLIATYPDIFVYACDFSPRAVELVKAHDEYTETRVCAFACDLTGDG 136
Query: 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT 197
L + ISPSS+DIVTM+FVLSAVSPEKMS VLQNI+KVLKP G +LFRDYA+GDLAQER +
Sbjct: 137 LDKHISPSSVDIVTMIFVLSAVSPEKMSSVLQNIRKVLKPNGCILFRDYAVGDLAQERFS 196
Query: 198 GKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRR 257
GKDQ+ISENFYVRGDGTRAFYFSN+FL +LF E GF+VEEL +CCKQVENR+RELVMNRR
Sbjct: 197 GKDQRISENFYVRGDGTRAFYFSNEFLETLFSEQGFEVEELDVCCKQVENRSRELVMNRR 256
Query: 258 WVQAVFCXXXXXXXXXXXXX-VRVDIFNQA-IIEPDVAANTLKEPMNDSEVDMSEGVAFE 315
WVQA F ++D Q I+ KE ++ +++D+S+G+A E
Sbjct: 257 WVQATFRRTNGNKNPCDSLTPAKLDKSEQQDSIQSKSEEQERKEIIDYTDIDISDGLAME 316
Query: 316 MFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIV 375
MFG S +EM V LRD +FKI++LSKEYQHTC+STGLMLWESA LMA+VL RNP IV
Sbjct: 317 MFGASP-SSHEMSVVKLRDSAFKIKLLSKEYQHTCKSTGLMLWESARLMASVLDRNPNIV 375
Query: 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435
+GK+VLELGCGC GICSMVAA SA+LVVATD D+ AL LL +N+T NL+ L KL T
Sbjct: 376 SGKRVLELGCGCTGICSMVAARSANLVVATDADTKALTLLTENITMNLQSSLLGKLKTSV 435
Query: 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASS-NKSLREDQQP 494
LEWGN++HIE+IK EGFEVI+GTDV+Y+ EAI+PLF TAKEL L ++P
Sbjct: 436 LEWGNKEHIESIKRLACEGFEVIMGTDVTYVAEAIIPLFETAKELILRKMGDDLEVQEKP 495
Query: 495 AFILCHIFRQVDEPSMLSAATQCGFRLVDKXXXXXXXXXXXXXXXXXXXXXGHEVYLPSP 554
A ILCH+FR+VDEPS+LSAA++ GF+L D+ +PS
Sbjct: 496 ALILCHVFRRVDEPSLLSAASKFGFKLADRWAANSKESPIGNIIDSWFSEKDLVAEIPSS 555
Query: 555 ALNIMYFQVE 564
AL+I+YFQ+E
Sbjct: 556 ALHILYFQME 565
|
|
| UNIPROTKB|Q8TCB7 METTL6 "Methyltransferase-like protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 115/254 (45%), Positives = 155/254 (61%)
Query: 14 EEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSG 73
EE KL+ T VS F + K E+EA+K WDLFYKR+ FFKDRH+ +E+ S
Sbjct: 17 EEEEKLK---RDQTLVSDFKQQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSC 73
Query: 74 AGRKD----VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTF 129
+D +LE GCG GN +FPL+ P++F YACDFSPRA+ V + + R F
Sbjct: 74 REFEDQKLTMLEAGCGVGNCLFPLLEEDPNIFAYACDFSPRAIEYVKQNPLYDTERCKVF 133
Query: 130 VCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189
CDL DDL + P S+D+V ++FVLSAV P+KM LVLQNI KVLKP VLFRDY +
Sbjct: 134 QCDLTKDDLLDHVPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVLFRDYGLY 193
Query: 190 DLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRA 249
D A R K+ ENFYVR DGTR+++F++DFL LF + G++ ++ N+
Sbjct: 194 DHAMLRFKASS-KLGENFYVRQDGTRSYFFTDDFLAQLFMDTGYEEVVNEYVFRETVNKK 252
Query: 250 RELVMNRRWVQAVF 263
L + R ++Q+ F
Sbjct: 253 EGLCVPRVFLQSKF 266
|
|
| RGD|1359565 Mettl6 "methyltransferase like 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 112/239 (46%), Positives = 149/239 (62%)
Query: 29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGA---GRK-DVLEVGC 84
VS F + K E+EA+K WDLFYKR+ FFKDRH+ +E+ S G+K +LE GC
Sbjct: 29 VSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREYEGQKLTLLEAGC 88
Query: 85 GAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144
G GN +FPL+ ++F YACDFSPRAV+ V H + R F CDL DDL I P
Sbjct: 89 GVGNCLFPLLEEDSNIFAYACDFSPRAVDYVKQHPLYNAERCKVFQCDLTRDDLLDHIPP 148
Query: 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKIS 204
S+D VT++FVLSAV PEKM LVL N+ KVLKP VLFRDY + D A R K+
Sbjct: 149 ESVDAVTLIFVLSAVHPEKMHLVLLNVYKVLKPGRSVLFRDYGLNDHAMLRFKA-GSKLG 207
Query: 205 ENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 263
ENFYVR DGTR+++F+++FL LF + G++ ++ N+ L + R ++Q+ F
Sbjct: 208 ENFYVRQDGTRSYFFTDEFLAKLFVDAGYEEVVNEYVFRETVNKKEGLCVPRVFLQSKF 266
|
|
| UNIPROTKB|Q6AXU8 Mettl6 "Methyltransferase-like protein 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 112/239 (46%), Positives = 149/239 (62%)
Query: 29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGA---GRK-DVLEVGC 84
VS F + K E+EA+K WDLFYKR+ FFKDRH+ +E+ S G+K +LE GC
Sbjct: 29 VSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREYEGQKLTLLEAGC 88
Query: 85 GAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144
G GN +FPL+ ++F YACDFSPRAV+ V H + R F CDL DDL I P
Sbjct: 89 GVGNCLFPLLEEDSNIFAYACDFSPRAVDYVKQHPLYNAERCKVFQCDLTRDDLLDHIPP 148
Query: 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKIS 204
S+D VT++FVLSAV PEKM LVL N+ KVLKP VLFRDY + D A R K+
Sbjct: 149 ESVDAVTLIFVLSAVHPEKMHLVLLNVYKVLKPGRSVLFRDYGLNDHAMLRFKA-GSKLG 207
Query: 205 ENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 263
ENFYVR DGTR+++F+++FL LF + G++ ++ N+ L + R ++Q+ F
Sbjct: 208 ENFYVRQDGTRSYFFTDEFLAKLFVDAGYEEVVNEYVFRETVNKKEGLCVPRVFLQSKF 266
|
|
| MGI|MGI:1914261 Mettl6 "methyltransferase like 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 111/239 (46%), Positives = 149/239 (62%)
Query: 29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGA---GRK-DVLEVGC 84
VS F + K E+EA+K WDLFYKR+ FFKDRH+ +E+ S G+K +LE GC
Sbjct: 29 VSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREYEGQKLTLLEAGC 88
Query: 85 GAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144
G GN +FPL+ ++F YACDFSPRAV+ V H + R F CDL DDL + P
Sbjct: 89 GVGNCLFPLLEEDLNLFAYACDFSPRAVDYVKQHPLYNAERCKVFQCDLTRDDLLDHVPP 148
Query: 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKIS 204
S+D VT++FVLSAV PEKM LVL N+ KVLKP VLFRDY + D A R K+
Sbjct: 149 ESVDAVTLIFVLSAVHPEKMRLVLLNVYKVLKPGRSVLFRDYGLNDHAMLRFKA-GSKLG 207
Query: 205 ENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 263
ENFYVR DGTR+++F+++FL LF + G++ ++ N+ L + R ++Q+ F
Sbjct: 208 ENFYVRQDGTRSYFFTDEFLAQLFVDAGYEEVVNEYVFRETVNKKEGLCVPRVFLQSKF 266
|
|
| POMBASE|SPBC3H7.11 SPBC3H7.11 "actin binding methyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 103/240 (42%), Positives = 149/240 (62%)
Query: 29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK---DVLEVGCG 85
+S FW +KY++E+KK WD FYKR++ RFFKDRH+LD+E+ YF G K +LEVGCG
Sbjct: 7 LSDFWVEKYKKESKKSWDKFYKRNETRFFKDRHWLDREFDCYF-GLPDKLPLTILEVGCG 65
Query: 86 AGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145
GN ++PL+ P++ +Y CDFSPRA++ V H + E RV FV D+ D L + +
Sbjct: 66 VGNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSCYNENRVFPFVNDITEDSLLEVLGSA 125
Query: 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL--TGKDQKI 203
ID +T +FVLSA+ EK ++N+ V+KP G+++FRDY GD AQE+ +G I
Sbjct: 126 CIDTLTAIFVLSAIPREKQLRSIKNLASVIKPGGHLVFRDYCDGDFAQEKFMTSGDPSMI 185
Query: 204 SENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 263
E +VR DGT + +F + + K GF + L + V+NR R L M R ++Q V+
Sbjct: 186 DEQTFVRQDGTLSLFFREEDIAEWMKSAGFGLVTLDRVNRTVDNRKRNLNMKRTFLQGVW 245
|
|
| UNIPROTKB|Q5ZHP8 METTL2 "Methyltransferase-like protein 2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 85/204 (41%), Positives = 124/204 (60%)
Query: 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMTHKD 120
L + + Y + +LEVGCGAGNT+FP++ P +FVY CDFS AV+LV ++ +
Sbjct: 161 LKQSYEDYPGSSASYRILEVGCGAGNTVFPILQTNNDPGLFVYCCDFSTTAVDLVQSNVE 220
Query: 121 FTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGY 180
+ +R FV DL +D + S+DIV ++FVLSA+ PEKM V+ + ++LKP G
Sbjct: 221 YDSSRCFAFVHDLCNDQSPFPMPDESLDIVILIFVLSAILPEKMQCVINKLSRLLKPGGM 280
Query: 181 VLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240
+L RDY DLAQ R K Q +S NFYVRGDGTR ++F+ D L LF G + L
Sbjct: 281 ILLRDYGRYDLAQLRFK-KGQCLSANFYVRGDGTRVYFFTQDELDDLFTRAGLQKIQ-NL 338
Query: 241 CCKQVE-NRARELVMNRRWVQAVF 263
++++ NR +++ M R W+Q +
Sbjct: 339 VDRRLQVNRGKQMTMYRVWIQCKY 362
|
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| RGD|1310240 Mettl2b "methyltransferase like 2B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 79/187 (42%), Positives = 117/187 (62%)
Query: 79 VLEVGCGAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
+LEVGCG GNT+FP++ PD+FVY CDFS A+ LV T+ ++ +R FV DL +
Sbjct: 182 ILEVGCGVGNTVFPILQTNNNPDLFVYCCDFSATAIELVKTNSEYDPSRCFAFVHDLCDE 241
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL 196
D S + S+D++ ++FVLSA+ P+KM + + ++LKP G +L RDY D+AQ R
Sbjct: 242 DQSYPMPKDSLDVIVLIFVLSAIVPDKMQKAISKLSRLLKPGGVMLLRDYGRYDMAQLRF 301
Query: 197 TGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNR 256
K Q +S NFYVRGDGTR ++F+ D L +LF G + + + + NR ++L M R
Sbjct: 302 K-KGQCLSGNFYVRGDGTRVYFFTQDELDTLFTAAGLEKVQNVVDRRLQVNRGKQLTMYR 360
Query: 257 RWVQAVF 263
W+Q +
Sbjct: 361 VWIQCKY 367
|
|
| UNIPROTKB|Q6P1Q9 METTL2B "Methyltransferase-like protein 2B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 81/189 (42%), Positives = 120/189 (63%)
Query: 79 VLEVGCGAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
+LEVGCG GNT+FP++ P +FVY CDFS A+ LV T+ ++ +R FV DL +
Sbjct: 184 ILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDLCDE 243
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL 196
+ S + S+DI+ ++FVLSAV P+KM + + ++LKP G VL RDY D+AQ R
Sbjct: 244 EKSYPVPKGSLDIIILIFVLSAVVPDKMQKAINRLSRLLKPGGMVLLRDYGRYDMAQLRF 303
Query: 197 TGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVE-NRARELVMN 255
K Q +S NFYVRGDGTR ++F+ + L +LF G + + L ++++ NR ++L M
Sbjct: 304 K-KGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQ-NLVDRRLQVNRGKQLTMY 361
Query: 256 RRWVQAVFC 264
R W+Q +C
Sbjct: 362 RVWIQCKYC 370
|
|
| UNIPROTKB|Q0P5B2 METTL2 "Methyltransferase-like protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 83/206 (40%), Positives = 126/206 (61%)
Query: 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMTH 118
H+L+ + + +LEVGCG GNT+FP++ P +FVY CDFS AV LV T+
Sbjct: 166 HHLEICANEFPGSSATYRILEVGCGVGNTVFPILQTNNDPSLFVYCCDFSSTAVELVQTN 225
Query: 119 KDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPT 178
+ +R FV DL +D S + +S+D++ ++FVLSA+ P+KM + + ++LKP
Sbjct: 226 SAYDPSRCFAFVHDLCDEDKSYPMPENSLDVIILIFVLSAIVPDKMQNAINRLSRLLKPG 285
Query: 179 GYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 238
G +L RDY D+AQ R K Q +SENFYVRGDGTR ++F+ D L +LF G + +
Sbjct: 286 GIMLLRDYGRYDMAQLRFK-KGQCLSENFYVRGDGTRVYFFTQDELDTLFTTAGLEKVQ- 343
Query: 239 GLCCKQVE-NRARELVMNRRWVQAVF 263
L ++++ NR ++L M R W+Q +
Sbjct: 344 NLVDRRLQVNRGKQLTMYRVWIQCKY 369
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pm.C_LG_VI000669 | hypothetical protein (557 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 564 | |||
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 3e-15 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-10 | |
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 2e-09 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 6e-09 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 1e-08 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 2e-08 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 5e-07 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 8e-07 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 1e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-06 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 1e-05 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 2e-05 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 9e-05 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 5e-04 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 7e-04 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 8e-04 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 0.001 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 0.001 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 0.002 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-15
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 80 LEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL----VMTHKDFTETRVSTFVCDLIS 135
L++GCG G + L+ A P + D SP A+ + RV V D I
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 136 DDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYV 181
D P S D+V VL + VL+N++++LKP G +
Sbjct: 61 LD------PGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-10
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-FTETRVSTFVCDLISD 136
VL++GCG G L A+ P V D SP A+ L V D
Sbjct: 1 RVLDLGCGTGALALAL-ASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL 59
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183
S D++ L + E ++ L+ +++LKP G ++
Sbjct: 60 PPEA---DESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 18/145 (12%)
Query: 352 STGLMLWESAHLMAAVLARNPTIVA----GKKVLELGCGCG--GICSMVAAGSADLVVAT 405
G +W++A +++ L T G VLELG G G GI + A + + T
Sbjct: 16 GIGGHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTI-T 74
Query: 406 DGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNEGFEVILGTDV 463
D + A++L+ +N+ N K+ K L+WG E + ++ + ++IL D
Sbjct: 75 DLEE-AIELMKKNIELNGLSS---KVTAKVLDWG-----EDLPDDVFDPHPVDLILAADC 125
Query: 464 SYIPEAILPLFATAKELTASSNKSL 488
Y ++ L T +L L
Sbjct: 126 VYNEDSFPLLEKTLNDLLGKETVIL 150
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Length = 170 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (134), Expect = 6e-09
Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 4/168 (2%)
Query: 30 SPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGA-GRKDVLEVGCGAGN 88
S + R + Y L + R G VL++GCG G
Sbjct: 2 SLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGR 61
Query: 89 TIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148
+V D SP + L + + FV + +S D
Sbjct: 62 LALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFD 121
Query: 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL 196
+V + VL + P K L+ + +VLKP G ++ D L + RL
Sbjct: 122 LVISLLVLHLLPPAK---ALRELLRVLKPGGRLVLSDLLRDGLLEGRL 166
|
Length = 257 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 36/183 (19%)
Query: 60 RHYLDKEWGRYFS-----GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL 114
R ++ R + VL++GCG G + L DV D SP AV
Sbjct: 2 RRQRERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGV--DPSPAAV-- 57
Query: 115 VMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAV-SPEKMSLVLQNIKK 173
+ F D + D++T VL + P +LQ +++
Sbjct: 58 -LIFSLF--------------DAPDPAVLAGKYDLITAFEVLEHLPDPPA---LLQQLRE 99
Query: 174 VLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233
+LKP G +L + + Y+R T ++S + L L ++ GF
Sbjct: 100 LLKPGGVLLISTP--------LADDDARLFANWHYLRPRNTHISFYSEESLKRLLEKAGF 151
Query: 234 DVE 236
++
Sbjct: 152 ELV 154
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-08
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 80 LEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLS 139
L+VGCG G + +A V D SP + L + V DL D
Sbjct: 1 LDVGCGTGL-LAEALARRGGARVTGVDLSPEMLALARKRAPR-KFVVGD-AEDLPFPD-- 55
Query: 140 RQISPSSIDIVTMVFVLSAV-SPEKMSLVLQNIKKVLKPTGYVLF 183
S D+V VL + PE+ L+ I +VLKP G ++
Sbjct: 56 -----ESFDVVVSSLVLHHLPDPER---ALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-07
Identities = 36/158 (22%), Positives = 56/158 (35%), Gaps = 17/158 (10%)
Query: 79 VLEVGCGAGNTIFPLIA-AYPDVFVYACDFSPRAVNL---VMTHKDFTETRVSTFVCDLI 134
VL++GCG G F L P V D S A+ + V D I
Sbjct: 7 VLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE--NVEFIQGD-I 63
Query: 135 SDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE 194
+ Q+ +S D+V VL+ + VL+ I +VLKP G ++ D
Sbjct: 64 EELPQLQLEDNSFDVVISNEVLNHL--PDPDKVLEEIIRVLKPGGVLIVSDPV----LLS 117
Query: 195 RLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232
L + + + G L ++ +E G
Sbjct: 118 ELPALLEDLERLYA----GVLEGAIGKKKLLTILREAG 151
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-07
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
+L++GCG G + L A P V D S A+ L +V V D DL
Sbjct: 1 ILDLGCGTGRVLRALARAGPS-SVTGVDISKEALELAKERLRDKGPKVRFVVADA--RDL 57
Query: 139 SRQISPSSIDIVTMVF-VLSAVSPEKMSLVLQNIKKVLKPTG 179
S D+V L +SP+++ +L+ ++L+P G
Sbjct: 58 PF--EEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 379 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438
+VL+LGCG G + +A+G V D +AL+L + A L +E
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLAD---------NVEV 51
Query: 439 GNRDHIEAIKEENNEGFEVILGTDV-SYIPEAILPLFATAKEL 480
D E + E +E F+VI+ ++ E + A+ L
Sbjct: 52 LKGD-AEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRL 93
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-06
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 11/113 (9%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVM--THKDFTETRVSTFVCDLISD 136
VL+ G G+G + A PD V + P A L RV V D
Sbjct: 4 VLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAREL 63
Query: 137 DLSRQISPSSIDIVTM--VFVLSAVSPEKM----SLVLQNIKKVLKPTGYVLF 183
++ S D+V + A P+ L ++LKP G ++
Sbjct: 64 L---ELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 20/127 (15%)
Query: 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLL 415
W ++A + +P V GK+VL+LG G G+ ++ AA A VVA D D +
Sbjct: 60 AWAGGQVLARYIDDHPETVRGKRVLDLGAG-SGLVAIAAARAGAAEVVAADIDPWLEQAI 118
Query: 416 AQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE---AILP 472
N AN H + I + F+++L D+ Y ++P
Sbjct: 119 RLNAAANGVSILFT-------------HADLI--GSPPAFDLLLAGDLFYNHTEADRLIP 163
Query: 473 LFATAKE 479
E
Sbjct: 164 WKDRLAE 170
|
Length = 218 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 27/133 (20%)
Query: 63 LDKEWGRYF---SGAGRKD-VLEVGCGAGNTIFPLIAAYPDVFVYACDFSP--------R 110
L + W R G D VL+V CG G+ L + V D S +
Sbjct: 35 LHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREK 94
Query: 111 AVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVS-PEKMSLVLQ 169
+ + +F D + +S D VT+ F L V+ +K L+
Sbjct: 95 LKKKGVQNVEFVV-----------GDAENLPFPDNSFDAVTISFGLRNVTDIDK---ALK 140
Query: 170 NIKKVLKPTGYVL 182
+ +VLKP G +L
Sbjct: 141 EMYRVLKPGGRLL 153
|
Length = 238 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 11/166 (6%)
Query: 22 YPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQ-DRFFKDRHYLDKEWGRYFSGAGRKDVL 80
V DK+E A ++WD + + R +E R VL
Sbjct: 5 ASDDTQNVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVL 64
Query: 81 EVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVS-TFVCDLISDDLS 139
+VGCG G PL A V D S + + + H E+ V+ + + D S
Sbjct: 65 DVGCGGGILSEPL--ARLGASVTGIDASEKPIEVAKLHA--LESGVNIDYRQATVEDLAS 120
Query: 140 RQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185
D+VT + VL V + L+ K++KP G +
Sbjct: 121 AG---GQFDVVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLST 161
|
Length = 243 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
VL++GCG G+ L +P V D SP + L + TFV D L
Sbjct: 5 VLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDAL 64
Query: 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183
D V + + +L + +LKP G ++
Sbjct: 65 DLLEGF---DAVFIGGGGGDLLE-----LLDALASLLKPGGRLVL 101
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Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 5e-04
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 15/106 (14%)
Query: 376 AGKKVLELGCGCGGICSMVAAGSADL-VVATDGDSIALDLLAQNVTANLKPPFLAKLITK 434
G +VL++GCG G + +A V D L+L +N L P
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGP--------- 51
Query: 435 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKEL 480
R+ + D +A + EGF+ + + +L L L
Sbjct: 52 RITFVQGDAPDA--LDLLEGFDAVF---IGGGGGDLLELLDALASL 92
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
VL++GCG G L+ +P A D S M +T++S V I D
Sbjct: 38 VLDIGCGTGYLTRALLKRFPQAEFIANDISA-----GMLA--QAKTKLSENV-QFICGDA 89
Query: 139 SRQ-ISPSSIDIVT--MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ 193
+ + SS D++ + + +S L + +VLKP G + F + G L +
Sbjct: 90 EKLPLEDSSFDLIVSNLALQWC----DDLSQALSELARVLKPGGLLAFSTFGPGTLHE 143
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 8e-04
Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 13/127 (10%)
Query: 377 GKKVLELGCGCGGICSMVA-AGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435
G +VL+ G G G A AG VV + D A L + + R
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRR--------LALAGLAPR 52
Query: 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILP--LFATAKELTASSNKSLREDQQ 493
+ D + E + F+++LG + Y P A P A++ + L+
Sbjct: 53 VRVVVGD-ARELLELPDGSFDLVLG-NPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGV 110
Query: 494 PAFILCH 500
I
Sbjct: 111 LVVITPA 117
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTAN 422
LA N G +VLE+G G GI ++VAA + VV D + A++ N N
Sbjct: 15 LAENAVDKKGDRVLEVGTGS-GIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN 68
|
Length = 188 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 365 AAVLARN-PTIVAGKKVLELGCGCGGICSMVAAGSADL-VVATDGDSIALDLLAQNVTAN 422
+ +L + P + GK VL+LGCG G + + +A S DL V D ++ AL+ N+ AN
Sbjct: 20 SRLLLSHLPKPLGGK-VLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAAN 78
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 23/120 (19%)
Query: 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADL-VVATDGDSIALDLLA 416
++ L+ A LA K++L+LG G G I +A D V+A D AL L
Sbjct: 94 PDTELLVEAALALLL--QLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR 151
Query: 417 QNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVS---YIPEAILPL 473
+N N L +++ + + E F++I VS YIP L
Sbjct: 152 ENAERNG----LVRVLVVQSDLF---------EPLRGKFDLI----VSNPPYIPAEDPEL 194
|
Length = 280 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 564 | |||
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 100.0 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.97 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.94 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.88 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.86 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.86 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.83 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.81 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.8 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.77 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.76 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.75 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.74 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.74 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.73 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.73 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.72 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.72 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.72 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.7 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.69 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.69 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.69 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.69 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.69 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.68 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.68 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.68 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.68 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.68 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.68 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.67 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.67 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.66 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.66 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.66 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.66 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.65 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.65 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.64 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.64 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.64 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.63 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.63 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.62 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.62 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 99.61 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.61 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 99.6 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.6 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.6 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.6 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.6 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.6 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.6 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.6 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.6 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.6 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.6 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.59 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.59 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.59 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.58 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.57 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.56 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.56 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.55 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.53 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.53 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.53 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.52 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.52 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.51 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.5 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.49 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.49 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.49 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.49 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.48 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.47 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.47 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.47 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.46 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.45 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.45 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.44 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.44 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.43 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.43 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.4 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.39 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.38 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.37 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.37 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.36 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.36 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.36 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.35 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.35 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.35 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.35 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.34 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.34 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.34 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.34 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.33 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.33 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.33 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.33 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.33 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.33 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.32 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.32 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.32 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.32 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.32 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.31 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.31 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.31 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.31 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.3 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.3 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.3 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.29 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.29 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.29 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.28 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.28 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.28 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.28 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.28 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.28 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.27 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.26 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.26 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.25 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.25 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.25 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.25 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.25 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.24 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.24 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.24 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.24 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.23 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.23 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.22 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.22 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.22 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.22 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.2 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.2 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.2 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.19 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.19 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.19 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.18 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.18 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.17 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.17 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.16 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.15 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.15 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.15 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.15 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.15 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.14 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.14 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.14 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.14 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.14 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.13 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.13 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.12 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.11 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.11 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.11 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.1 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.1 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.09 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.09 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.09 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.09 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.09 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.09 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.09 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.08 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.08 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.08 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.07 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.07 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.07 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.06 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.06 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.06 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.06 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.05 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.05 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.05 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.05 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.04 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.04 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.04 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.03 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.03 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.02 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.02 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.02 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.02 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.02 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.02 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.02 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.01 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.01 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.0 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.0 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.0 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.99 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.99 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.99 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.98 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.98 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.98 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.98 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.98 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.97 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.97 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.96 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.96 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.96 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.95 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.95 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.95 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.95 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.94 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.94 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.94 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.92 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.91 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.91 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.91 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.91 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.9 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.9 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.9 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.89 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.89 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.89 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.88 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.87 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.86 | |
| PLN02366 | 308 | spermidine synthase | 98.86 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.85 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.85 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.84 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.84 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.83 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.82 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.82 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.82 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.81 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.81 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.81 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.8 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.79 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.79 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.78 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.78 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.78 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.77 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.76 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.75 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.74 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.74 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.74 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.74 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.74 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.73 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.72 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.71 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.7 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.7 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.7 | |
| PLN02476 | 278 | O-methyltransferase | 98.69 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.69 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.67 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 98.67 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.67 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.67 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.66 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.65 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.65 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.65 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.65 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.65 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.64 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.64 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.64 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.64 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.63 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.63 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.63 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.62 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.61 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.61 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.6 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.59 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.59 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.58 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.57 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.57 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.57 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.57 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.57 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.56 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.55 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.55 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.54 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.54 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.53 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.53 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.51 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.51 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.51 | |
| PLN02366 | 308 | spermidine synthase | 98.51 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.5 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.49 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.48 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.46 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.45 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.45 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.45 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.45 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.44 | |
| PLN02823 | 336 | spermine synthase | 98.43 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.43 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.43 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.41 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.4 | |
| PLN02476 | 278 | O-methyltransferase | 98.39 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.39 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.39 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.37 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.37 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.36 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.36 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.34 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.34 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.34 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.31 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.31 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.31 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.3 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.29 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.26 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.26 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.26 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.24 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.24 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.24 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.24 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.24 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.23 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.23 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.22 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.2 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.18 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.18 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.17 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.16 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.15 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.14 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.13 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.13 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.13 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.11 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.1 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.1 | |
| KOG2497 | 262 | consensus Predicted methyltransferase [General fun | 98.08 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.07 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.06 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.04 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.03 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.02 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.01 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.0 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.0 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.99 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.99 | |
| PLN02823 | 336 | spermine synthase | 97.96 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.96 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.96 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.96 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.93 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.92 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.91 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.91 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.9 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.9 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.89 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.89 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.86 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.85 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.85 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.84 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.84 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.83 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.81 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.77 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.76 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.76 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.75 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.71 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.71 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.71 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.71 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.7 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.7 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.69 | |
| PRK13699 | 227 | putative methylase; Provisional | 97.69 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.69 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.68 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.68 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.66 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.61 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.58 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.58 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.57 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.54 | |
| PHA01634 | 156 | hypothetical protein | 97.54 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.53 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.52 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.51 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.51 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.51 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.5 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.5 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.5 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.5 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.48 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.46 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.44 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.44 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.41 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.41 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.41 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.4 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.39 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.38 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.38 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.35 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.35 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.34 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.32 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.32 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.31 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.31 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.3 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.3 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.3 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.27 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.26 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.26 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.22 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.21 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.2 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.2 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.18 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.16 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.14 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.14 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.11 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.11 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.1 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.09 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.08 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.07 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.07 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.07 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.05 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.04 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.04 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.0 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.95 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.82 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.81 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.8 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.8 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.79 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.78 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.75 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.74 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.69 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.67 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.61 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.59 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.53 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.46 |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=257.61 Aligned_cols=251 Identities=48% Similarity=0.826 Sum_probs=229.7
Q ss_pred ccccccCCCCCCCCChhHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCC--eEEEEcCCccccHHHH
Q 008457 16 APKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK--DVLEVGCGAGNTIFPL 93 (564)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~VLDiGcG~G~~~~~l 93 (564)
.....+..+..-.....+..+|+..+.+|||.||+.+.++|+++++|+..+|.+++...... +||+||||.|.....+
T Consensus 10 ~a~~~~k~~~~~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPl 89 (264)
T KOG2361|consen 10 AARKKVKEQSASRVLEEEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPL 89 (264)
T ss_pred HHHHHHhhccccccchhhhhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchh
Confidence 34444556666677788888999999999999999999999999999999999988753333 8999999999999999
Q ss_pred HHhCCC--cEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHH
Q 008457 94 IAAYPD--VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNI 171 (564)
Q Consensus 94 ~~~~~~--~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~ 171 (564)
++..|+ ..|+++|.||.+++..+++......++...+.|+..+.+..++..+++|+|++.++|-.++++....+++++
T Consensus 90 l~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl 169 (264)
T KOG2361|consen 90 LKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNL 169 (264)
T ss_pred hhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHH
Confidence 998766 899999999999999999987777888888899988887778899999999999999999999999999999
Q ss_pred HhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeeeeccccccccc
Q 008457 172 KKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARE 251 (564)
Q Consensus 172 ~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~ 251 (564)
+++|||||.+++.+++..+..+.++. ..+.+..++|.+++|+..|+|+.+++.++|.++||..++..+..+...++.++
T Consensus 170 ~~llKPGG~llfrDYg~~DlaqlRF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~ 248 (264)
T KOG2361|consen 170 RTLLKPGGSLLFRDYGRYDLAQLRFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQ 248 (264)
T ss_pred HHHhCCCcEEEEeecccchHHHHhcc-CCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccceeeeeeehhcc
Confidence 99999999999999999999999887 78889999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEEEEEecC
Q 008457 252 LVMNRRWVQAVFCSSG 267 (564)
Q Consensus 252 ~~~~~~~l~~~~~~~~ 267 (564)
+.|+|.|+++.|+||.
T Consensus 249 lkm~Rvwvq~~f~k~~ 264 (264)
T KOG2361|consen 249 LKMYRVWVQAKFQKPL 264 (264)
T ss_pred CccceEEEEEEeecCC
Confidence 9999999999999874
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=259.45 Aligned_cols=367 Identities=18% Similarity=0.169 Sum_probs=232.9
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+.+...++.+|||||||+|.++..|++. ..+|+|+|+++.|++.++.... ...++.++++|+....+ +++++
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~~~~~~--~~~~~ 102 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESING-HYKNVKFMCADVTSPDL--NISDG 102 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhc-cCCceEEEEeccccccc--CCCCC
Confidence 3344454456789999999999999999988 5689999999999998865432 23578999999864433 56788
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+||+|++..+++|++.+++..++++++++|||||.+++.+........ . .. ......+.+...|.
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~--~-----------~~--~~~~~~~~~~~~~~ 167 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGD--S-----------KR--KNNPTHYREPRFYT 167 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCc--c-----------cc--cCCCCeecChHHHH
Confidence 999999999999998777899999999999999999998754321100 0 00 01122234678999
Q ss_pred HHHHhCCCcEEEeeeeeccccccccccccceeEEEEEEEecCCCCCCccchhhhhhhcccccchhhhhhhhhcCcCCCcc
Q 008457 226 SLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSE 305 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~~~ 305 (564)
++|.++||.........-... ..++...+.+|......-..... .+.... ..-...+++.+....
T Consensus 168 ~~f~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~y~~- 232 (475)
T PLN02336 168 KVFKECHTRDEDGNSFELSLV---------GCKCIGAYVKNKKNQNQICWLWQ--KVSSTN---DKGFQRFLDNVQYKS- 232 (475)
T ss_pred HHHHHheeccCCCCEEEEEEE---------EeechhhhhhccCCcceEEEEEE--eecCCc---chhHHHHhhhhcccc-
Confidence 999999998765433221111 01122233344433332211000 000000 001111111100000
Q ss_pred cccchHHHHhhhCCCCCCCceEEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCC
Q 008457 306 VDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGC 385 (564)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~ 385 (564)
..+-. +..+|+. . ..++.+..-++.+.....+.++.+|||+||
T Consensus 233 ~~i~~--~~~f~g~----------------~-------------------~~v~~~v~~te~l~~~~~~~~~~~vLDiGc 275 (475)
T PLN02336 233 SGILR--YERVFGE----------------G-------------------FVSTGGLETTKEFVDKLDLKPGQKVLDVGC 275 (475)
T ss_pred ccHHH--HHHHhCC----------------C-------------------CCCCchHHHHHHHHHhcCCCCCCEEEEEec
Confidence 00000 0011111 0 112222222333333333446789999999
Q ss_pred cccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceee
Q 008457 386 GCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY 465 (564)
Q Consensus 386 G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y 465 (564)
|+|.++..++.....+|+++|+|+.+++.+++|..... .++.+...|+... ++++++||+|++.++++
T Consensus 276 G~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-----~~v~~~~~d~~~~-------~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 276 GIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-----CSVEFEVADCTKK-------TYPDNSFDVIYSRDTIL 343 (475)
T ss_pred cCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-----CceEEEEcCcccC-------CCCCCCEEEEEECCccc
Confidence 99988777776556699999999999999998865221 3567766666543 23456899999999999
Q ss_pred CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-------------------CChhHHHHHHHHcCCeEEEEc
Q 008457 466 IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------VDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 466 ~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-------------------~~~~~~~~~~~~~g~~~~~~~ 525 (564)
+..+.+.+++.+.++| +|+| .++++...+. .+...+.+.+.++||.+..+.
T Consensus 344 h~~d~~~~l~~~~r~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 344 HIQDKPALFRSFFKWL-KPGG--------KVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred ccCCHHHHHHHHHHHc-CCCe--------EEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 9999999999999999 9988 7776643321 122355677888899988664
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-27 Score=211.58 Aligned_cols=153 Identities=31% Similarity=0.423 Sum_probs=101.4
Q ss_pred CCCccceechhHHHHHHHHhcC------CCCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhc
Q 008457 350 CRSTGLMLWESAHLMAAVLARN------PTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTAN 422 (564)
Q Consensus 350 ~~~~G~~~W~~~~~l~~~l~~~------~~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n 422 (564)
...+|..+|+++.+|++||..+ +..+++++|||||||+|..++.++.. ++.+|++||+++ ++++++.|++.|
T Consensus 13 ~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N 91 (173)
T PF10294_consen 13 GDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELN 91 (173)
T ss_dssp ----------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT
T ss_pred ccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhc
Confidence 4589999999999999999994 56789999999999999444444444 478999999987 999999999999
Q ss_pred CCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 423 LKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 423 ~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
+. ....++.+..++|++....+ .+...+||+||++||+|+.+.+++|++++.++| +++| .++++++.
T Consensus 92 ~~-~~~~~v~v~~L~Wg~~~~~~---~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll-~~~~--------~vl~~~~~ 158 (173)
T PF10294_consen 92 GS-LLDGRVSVRPLDWGDELDSD---LLEPHSFDVILASDVLYDEELFEPLVRTLKRLL-KPNG--------KVLLAYKR 158 (173)
T ss_dssp ---------EEEE--TTS-HHHH---HHS-SSBSEEEEES--S-GGGHHHHHHHHHHHB-TT-T--------TEEEEEE-
T ss_pred cc-cccccccCcEEEecCccccc---ccccccCCEEEEecccchHHHHHHHHHHHHHHh-CCCC--------EEEEEeCE
Confidence 84 22368999999999742211 234568999999999999999999999999999 8876 49999999
Q ss_pred ccCChhHHHHHHHH
Q 008457 503 RQVDEPSMLSAATQ 516 (564)
Q Consensus 503 r~~~~~~~~~~~~~ 516 (564)
|+.....|++.+++
T Consensus 159 R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 159 RRKSEQEFFDRLKK 172 (173)
T ss_dssp S-TGGCHHHHHH--
T ss_pred ecHHHHHHHHHhhh
Confidence 98777889999876
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=183.81 Aligned_cols=207 Identities=20% Similarity=0.192 Sum_probs=151.7
Q ss_pred CCCCChhHHHHHHHHHhHhHHHHHHhhccccccccch--------hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhC
Q 008457 26 NTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHY--------LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY 97 (564)
Q Consensus 26 ~~~~~~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~ 97 (564)
+.+++....+.|++.+..|||... .++..|. +.......+. .++.+|||||||.|.++..+++.
T Consensus 9 ~~~id~~e~~~F~~la~~wwd~~g------~f~~LH~~N~~rl~~i~~~~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~- 80 (243)
T COG2227 9 TQNVDYKELDKFEALASRWWDPEG------EFKPLHKINPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARL- 80 (243)
T ss_pred cccCCHHHHHHHHHHHhhhcCCCC------ceeeeeeeccchhhhhhhhhhcccC-CCCCeEEEecCCccHhhHHHHHC-
Confidence 567888899999999999999632 2233332 2222211111 58999999999999999999999
Q ss_pred CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCC
Q 008457 98 PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKP 177 (564)
Q Consensus 98 ~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkp 177 (564)
|.+|+|+|+++.+++.|+.+....+..+.|.+..+.+... ..++||+|+|..||+|++ ++..+++.+.+++||
T Consensus 81 -Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~----~~~~FDvV~cmEVlEHv~--dp~~~~~~c~~lvkP 153 (243)
T COG2227 81 -GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLAS----AGGQFDVVTCMEVLEHVP--DPESFLRACAKLVKP 153 (243)
T ss_pred -CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHh----cCCCccEEEEhhHHHccC--CHHHHHHHHHHHcCC
Confidence 7999999999999999999988777778888877754322 337999999999999996 788899999999999
Q ss_pred CeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEE-eeeeecccccc
Q 008457 178 TGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE-LGLCCKQVENR 248 (564)
Q Consensus 178 gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~-~~~~~~~~~~~ 248 (564)
||.+++++.+.......-..-....+.. +.+.+.+....+..++++..++..+|+.+.. ....+.+..+.
T Consensus 154 ~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~y~p~~~~ 224 (243)
T COG2227 154 GGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPLTNS 224 (243)
T ss_pred CcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhcccCCceEEeecceEeccccce
Confidence 9999999988654322211111111221 2232223333488999999999999988876 45566666553
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-21 Score=186.68 Aligned_cols=214 Identities=16% Similarity=0.215 Sum_probs=143.1
Q ss_pred CCCCCCChhHHHHHHHHHhHhHHHHH---HhhccccccccchhHHHHhhhc-------cCCCCCeEEEEcCCccccHHHH
Q 008457 24 TPNTGVSPFWRDKYEREAKKYWDLFY---KRHQDRFFKDRHYLDKEWGRYF-------SGAGRKDVLEVGCGAGNTIFPL 93 (564)
Q Consensus 24 ~~~~~~~~~~~~~y~~~a~~ywd~~~---~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~VLDiGcG~G~~~~~l 93 (564)
+...++++...++|++.+.+||+... .-+.-+ -....++...+.+.+ ...++.+|||||||+|.++..|
T Consensus 71 ~~~~s~~~~e~~~f~~~a~~WW~~~g~~~~lh~~N-~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~L 149 (322)
T PLN02396 71 STTTSLNEDELAKFSAIADTWWHSEGPFKPLHQMN-PTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPL 149 (322)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCchHHHHhC-hHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHH
Confidence 34457888899999999999998411 000000 001112222222222 1246779999999999999998
Q ss_pred HHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHH
Q 008457 94 IAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNI 171 (564)
Q Consensus 94 ~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~ 171 (564)
++. +.+|+|+|+++++++.|+.+..... .++.+.++|+.. + ++++++||+|++..+++|++ ++..+++++
T Consensus 150 a~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~--l--~~~~~~FD~Vi~~~vLeHv~--d~~~~L~~l 221 (322)
T PLN02396 150 ARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK--L--ADEGRKFDAVLSLEVIEHVA--NPAEFCKSL 221 (322)
T ss_pred HHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH--h--hhccCCCCEEEEhhHHHhcC--CHHHHHHHH
Confidence 875 7899999999999999997754322 478899988743 2 34568999999999999995 778999999
Q ss_pred HhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEe-eeeeccccc
Q 008457 172 KKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL-GLCCKQVEN 247 (564)
Q Consensus 172 ~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~-~~~~~~~~~ 247 (564)
.++|||||.+++.+.+...............+ ..+..........+++++++..+++++||+++++ ...+++..+
T Consensus 222 ~r~LkPGG~liist~nr~~~~~~~~i~~~eyi-~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~~~~p~~~ 297 (322)
T PLN02396 222 SALTIPNGATVLSTINRTMRAYASTIVGAEYI-LRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGFVYNPITG 297 (322)
T ss_pred HHHcCCCcEEEEEECCcCHHHHHHhhhhHHHH-HhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeeeEEcCcCC
Confidence 99999999999998775422110000000000 0011111111223679999999999999999875 445555444
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=175.18 Aligned_cols=192 Identities=20% Similarity=0.253 Sum_probs=139.4
Q ss_pred hhHHHHHHHHHhHhHHHHHHhhcccc--ccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCC
Q 008457 31 PFWRDKYEREAKKYWDLFYKRHQDRF--FKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFS 108 (564)
Q Consensus 31 ~~~~~~y~~~a~~ywd~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s 108 (564)
......|+..|.+|-.. +.. +...+.+...+.+.+...++.+|||||||||.++..+++..+.++|+++|+|
T Consensus 11 ~~v~~vF~~ia~~YD~~------n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s 84 (238)
T COG2226 11 EKVQKVFDKVAKKYDLM------NDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDIS 84 (238)
T ss_pred HHHHHHHHhhHHHHHhh------cccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECC
Confidence 34667888888887221 111 1111222333444444458999999999999999999999778899999999
Q ss_pred hHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 109 PRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 109 ~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+.|++.|+++....+ .+++|+.+|+.. + ||++++||+|.+.+.|++++ ++..+|++++|+|||||++++.++.
T Consensus 85 ~~ML~~a~~k~~~~~~~~i~fv~~dAe~--L--Pf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 85 ESMLEVAREKLKKKGVQNVEFVVGDAEN--L--PFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred HHHHHHHHHHhhccCccceEEEEechhh--C--CCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 999999999986533 349999999954 3 78999999999999999995 8999999999999999999999887
Q ss_pred CCchhhh-h-----hcc-cccccccceeecCCCcee---------eccCHHHHHHHHHhCCCcEEE
Q 008457 188 IGDLAQE-R-----LTG-KDQKISENFYVRGDGTRA---------FYFSNDFLTSLFKENGFDVEE 237 (564)
Q Consensus 188 ~~~~~~~-~-----~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~l~~aGf~~~~ 237 (564)
.+..... . +.. ..+.+..... ..... .+.+.+++..+++++||..+.
T Consensus 159 ~p~~~~~~~~~~~~~~~~v~P~~g~~~~---~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 159 KPDNPVLRKAYILYYFKYVLPLIGKLVA---KDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred CCCchhhHHHHHHHHHHhHhhhhceeee---cChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 6543211 1 111 1121111111 11111 156899999999999999876
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=178.17 Aligned_cols=197 Identities=22% Similarity=0.260 Sum_probs=89.8
Q ss_pred hHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChH
Q 008457 32 FWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPR 110 (564)
Q Consensus 32 ~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~ 110 (564)
.....|+..|..| |...... .+.... .+...+.+.+...++.+|||+|||||.++..+++. .+..+|+|+|+|+.
T Consensus 8 ~v~~~Fd~ia~~Y-D~~n~~l--s~g~~~-~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ 83 (233)
T PF01209_consen 8 YVRKMFDRIAPRY-DRMNDLL--SFGQDR-RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG 83 (233)
T ss_dssp ---------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH
T ss_pred HHHHHHHHHHHHh-CCCcccc--CCcHHH-HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH
Confidence 3566788888776 3321110 111111 22234445555678999999999999999999887 45689999999999
Q ss_pred HHHHHHhccccc-CCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 111 AVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 111 ~l~~a~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
|++.|+++.... ..+++++++|+... |+++++||+|++.+.+++++ ++..++++++|+|||||++++.++..+
T Consensus 84 ML~~a~~k~~~~~~~~i~~v~~da~~l----p~~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 84 MLEVARKKLKREGLQNIEFVQGDAEDL----PFPDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp HHHHHHHHHHHTT--SEEEEE-BTTB------S-TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HHHHHHHHHHhhCCCCeeEEEcCHHHh----cCCCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 999999987543 24899999999653 67899999999999999995 788999999999999999999988766
Q ss_pred chhhhh-hc----c-cccccccce------eecCCCceeeccCHHHHHHHHHhCCCcEEEe
Q 008457 190 DLAQER-LT----G-KDQKISENF------YVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 190 ~~~~~~-~~----~-~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
.....+ +. . ..+.+...+ |.........+.+.+++.++++++||+.++.
T Consensus 158 ~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 158 RNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp SSHHHHHHHHH--------------------------------------------------
T ss_pred CCchhhceeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 432211 11 0 111111000 0000111122568999999999999987654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-20 Score=155.72 Aligned_cols=159 Identities=23% Similarity=0.361 Sum_probs=130.7
Q ss_pred CCcc-ceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCC
Q 008457 351 RSTG-LMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPF 427 (564)
Q Consensus 351 ~~~G-~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~ 427 (564)
+.|| .++||+..+||.++++++..+.+++|||||.|--++++++.+.. ...|..||.++++++..++-+..|...
T Consensus 3 dntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s-- 80 (201)
T KOG3201|consen 3 DNTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS-- 80 (201)
T ss_pred CCCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc--
Confidence 3455 68999999999999999999999999999999877888777754 468999999999999999988888554
Q ss_pred CCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh
Q 008457 428 LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE 507 (564)
Q Consensus 428 ~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~ 507 (564)
+--++..+.|....+-. ......||+|+++||+|..+.++.|+++|+++| +|.| .+++..++|..+.
T Consensus 81 -~~tsc~vlrw~~~~aqs---q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL-~p~g--------~Al~fsPRRg~sL 147 (201)
T KOG3201|consen 81 -SLTSCCVLRWLIWGAQS---QQEQHTFDIILAADCLFFDEHHESLVDTIKSLL-RPSG--------RALLFSPRRGQSL 147 (201)
T ss_pred -ccceehhhHHHHhhhHH---HHhhCcccEEEeccchhHHHHHHHHHHHHHHHh-Cccc--------ceeEecCcccchH
Confidence 22233344443222211 123458999999999999999999999999999 9988 6888889999999
Q ss_pred hHHHHHHHHcCCeEEEE
Q 008457 508 PSMLSAATQCGFRLVDK 524 (564)
Q Consensus 508 ~~~~~~~~~~g~~~~~~ 524 (564)
..|.+.+...||.|..-
T Consensus 148 ~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 148 QKFLDEVGTVGFTVCLE 164 (201)
T ss_pred HHHHHHHHhceeEEEec
Confidence 99999999999988753
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-19 Score=170.25 Aligned_cols=199 Identities=18% Similarity=0.195 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCCh
Q 008457 31 PFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSP 109 (564)
Q Consensus 31 ~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~ 109 (564)
+...+.|+..|..| |...... .......+.....+.+...++.+|||+|||+|.++..+++.. +..+|+|+|+|+
T Consensus 33 ~~v~~~f~~~A~~Y-D~~~~~~---s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~ 108 (261)
T PLN02233 33 NERQALFNRIAPVY-DNLNDLL---SLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS 108 (261)
T ss_pred HHHHHHHHHhhhHH-HHhhhhh---cCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 44566778877765 3321110 000011112222334455678999999999999999888873 557999999999
Q ss_pred HHHHHHHhccc----ccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 110 RAVNLVMTHKD----FTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 110 ~~l~~a~~~~~----~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++.|+++.. ....+++++++|+... |+++++||+|+++.++||++ ++..++++++|+|||||.+++.+
T Consensus 109 ~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l----p~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 109 EQLAVAASRQELKAKSCYKNIEWIEGDATDL----PFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred HHHHHHHHHhhhhhhccCCCeEEEEcccccC----CCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEE
Confidence 99999987643 1235789999998542 56889999999999999995 78899999999999999999998
Q ss_pred cCCCchhhhh-hccc-----ccccccceeecCC------CceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 186 YAIGDLAQER-LTGK-----DQKISENFYVRGD------GTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 186 ~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~------~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
+......... +..+ ...+... +.... .....+++.+++.++++++||+.+....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 183 FNKSTQPFTTSMQEWMIDNVVVPVATG-YGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred CCCCCcHHHHHHHHHHHhhhhhHHHHH-hCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEE
Confidence 8765422111 1000 0000000 00000 0112267999999999999999876533
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=165.83 Aligned_cols=216 Identities=21% Similarity=0.241 Sum_probs=146.3
Q ss_pred cCCCCCCCCChhHHHHHHHHHhHhHHHHHHhhcccc--ccccchhHHHHhhhccC-CC------CCeEEEEcCCccccHH
Q 008457 21 IYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRF--FKDRHYLDKEWGRYFSG-AG------RKDVLEVGCGAGNTIF 91 (564)
Q Consensus 21 ~~~~~~~~~~~~~~~~y~~~a~~ywd~~~~~~~~~~--~~~~~~~~~~~~~~l~~-~~------~~~VLDiGcG~G~~~~ 91 (564)
......-+++.....+|+..+..|||.-...+.-+- .....++...+.+.... .| +++|||+|||+|-++.
T Consensus 26 ~s~~s~~si~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSe 105 (282)
T KOG1270|consen 26 LSQASTTSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSE 105 (282)
T ss_pred ccccceecccHHHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccch
Confidence 455566667777788999999999997321111111 11122333333333311 22 4889999999999999
Q ss_pred HHHHhCCCcEEEEEeCChHHHHHHHhcccccC---C----CeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHH
Q 008457 92 PLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---T----RVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKM 164 (564)
Q Consensus 92 ~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~----~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~ 164 (564)
.|++. +.+|+|+|+++.|++.|+.+....+ . ++.|.+.++.. ..+.||+|+|..+++|+ .++
T Consensus 106 pLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~-------~~~~fDaVvcsevleHV--~dp 174 (282)
T KOG1270|consen 106 PLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG-------LTGKFDAVVCSEVLEHV--KDP 174 (282)
T ss_pred hhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh-------cccccceeeeHHHHHHH--hCH
Confidence 99999 7899999999999999999843322 2 35566666643 23469999999999999 699
Q ss_pred HHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEE-eeeeec
Q 008457 165 SLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE-LGLCCK 243 (564)
Q Consensus 165 ~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~-~~~~~~ 243 (564)
..++..+.++|||||.+++++.+........-. ..........+.+.++...|.+++++..++..+|+++.. ....+.
T Consensus 175 ~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i-~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G~~y~ 253 (282)
T KOG1270|consen 175 QEFLNCLSALLKPNGRLFITTINRTILSFAGTI-FLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVGEVYN 253 (282)
T ss_pred HHHHHHHHHHhCCCCceEeeehhhhHHHhhccc-cHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhccccc
Confidence 999999999999999999998776433211100 001111112222333334488999999999999998876 355555
Q ss_pred ccccc
Q 008457 244 QVENR 248 (564)
Q Consensus 244 ~~~~~ 248 (564)
++.++
T Consensus 254 p~s~~ 258 (282)
T KOG1270|consen 254 PISGQ 258 (282)
T ss_pred cccce
Confidence 55543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=172.28 Aligned_cols=155 Identities=19% Similarity=0.215 Sum_probs=116.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||||||+|.++..+++.+ +++|+|+|+|+.|++.|+++....+ .++++.++|+... ++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~----~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ----PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC----CCCCCCccEEE
Confidence 567899999999999999999876 7899999999999999988754332 5789999998543 56789999999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh--hhc----ccccccccceeecCCCceeeccCHHHHH
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE--RLT----GKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+..+++|++ +...++++++++|||||.+++.++........ .+. .....+...+ ....+.+.+++.
T Consensus 192 s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~------~~p~~~s~~~~~ 263 (340)
T PLN02244 192 SMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAY------YLPAWCSTSDYV 263 (340)
T ss_pred ECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhc------cCCCCCCHHHHH
Confidence 999999995 67899999999999999999987653221100 000 0000000000 011235899999
Q ss_pred HHHHhCCCcEEEeeee
Q 008457 226 SLFKENGFDVEELGLC 241 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~~ 241 (564)
++++++||..+.....
T Consensus 264 ~~l~~aGf~~v~~~d~ 279 (340)
T PLN02244 264 KLAESLGLQDIKTEDW 279 (340)
T ss_pred HHHHHCCCCeeEeeeC
Confidence 9999999999876544
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=160.37 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=122.2
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
..+.+.+...++.+|||||||+|..+..+++.+ +++|+|+|+|+.+++.|+++... ..++.+.++|+... ++++
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~----~~~~ 115 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKK----DFPE 115 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccC----CCCC
Confidence 344455566788999999999999999888764 67999999999999999987653 45789999998642 5678
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch--hhhhhcccccccccceeecCCCceeeccCHH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL--AQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
++||+|++..+++|++.+++..++++++++|||||.+++.++..... ....+.... ......+.+.+
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 184 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYI-----------KKRKYTLIPIQ 184 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHH-----------HhcCCCCCCHH
Confidence 89999999999999976789999999999999999999988754321 111110000 00011245899
Q ss_pred HHHHHHHhCCCcEEEeee
Q 008457 223 FLTSLFKENGFDVEELGL 240 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~ 240 (564)
++.++++++||+.+....
T Consensus 185 ~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 185 EYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred HHHHHHHHCCCCeeeEEe
Confidence 999999999999887644
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-18 Score=163.40 Aligned_cols=196 Identities=16% Similarity=0.215 Sum_probs=129.8
Q ss_pred HHHHHHhHhHHHHHHhhccccccccch-hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHH
Q 008457 36 KYEREAKKYWDLFYKRHQDRFFKDRHY-LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL 114 (564)
Q Consensus 36 ~y~~~a~~ywd~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~ 114 (564)
.|++.|.+|-+..|............+ -...+.+.+. .++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.
T Consensus 5 ~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~ 81 (255)
T PRK11036 5 NFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQR 81 (255)
T ss_pred ChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 477777777665543322221111000 0112223333 45789999999999999999987 6899999999999999
Q ss_pred HHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchh
Q 008457 115 VMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLA 192 (564)
Q Consensus 115 a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~ 192 (564)
|+++....+ .+++++++|+.... ++++++||+|++..+++|++ ++..+++++.++|||||.+++..++.....
T Consensus 82 a~~~~~~~g~~~~v~~~~~d~~~l~---~~~~~~fD~V~~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~ 156 (255)
T PRK11036 82 AKQAAEAKGVSDNMQFIHCAAQDIA---QHLETPVDLILFHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMFYNANGLL 156 (255)
T ss_pred HHHHHHhcCCccceEEEEcCHHHHh---hhcCCCCCEEEehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEEECccHHH
Confidence 998865433 46888888885431 23568999999999999994 678899999999999999999877654321
Q ss_pred hhh-hcccccccccceee--cCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 193 QER-LTGKDQKISENFYV--RGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 193 ~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
... +............. .......+.++++++.++++++||+++...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~ 206 (255)
T PRK11036 157 MHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKT 206 (255)
T ss_pred HHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeee
Confidence 111 11100100001100 001112235789999999999999987543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-15 Score=163.27 Aligned_cols=185 Identities=17% Similarity=0.184 Sum_probs=124.5
Q ss_pred EEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEc
Q 008457 327 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 406 (564)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD 406 (564)
.+.+...|..+.|..... ..||.. ++- +..-.++.. ..++++|||||||+|+++..++..++.+|+++|
T Consensus 500 ~~~v~e~g~~f~v~~~~~------~~tG~f-lDq-r~~R~~~~~---~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD 568 (702)
T PRK11783 500 FLEVTEYGAKLLVNLTDY------LDTGLF-LDH-RPTRRMIGQ---MAKGKDFLNLFAYTGTASVHAALGGAKSTTTVD 568 (702)
T ss_pred eEEEEECCEEEEEEcCCC------CcceEC-HHH-HHHHHHHHH---hcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEe
Confidence 344556676666654322 356632 111 112223322 236789999999999998888887777899999
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC------------CChHHHH
Q 008457 407 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP------------EAILPLF 474 (564)
Q Consensus 407 ~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~------------~~~~~l~ 474 (564)
+|+.+++.+++|+..|++.. .++++...|.. +.+..+ ..+||+|++ |..|.. ..+..++
T Consensus 569 ~s~~al~~a~~N~~~ng~~~--~~v~~i~~D~~-----~~l~~~-~~~fDlIil-DPP~f~~~~~~~~~~~~~~~y~~l~ 639 (702)
T PRK11783 569 MSNTYLEWAERNFALNGLSG--RQHRLIQADCL-----AWLKEA-REQFDLIFI-DPPTFSNSKRMEDSFDVQRDHVALI 639 (702)
T ss_pred CCHHHHHHHHHHHHHhCCCc--cceEEEEccHH-----HHHHHc-CCCcCEEEE-CCCCCCCCCccchhhhHHHHHHHHH
Confidence 99999999999999998742 34565554432 111122 458999985 444432 2457788
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCCCCCCCCc--cccccccc
Q 008457 475 ATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPS--ESIISSWF 542 (564)
Q Consensus 475 ~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~ 542 (564)
..+.++| +|+| .++++...+.... -...+.+.|+.+..+.....|..-+ -+|..||.
T Consensus 640 ~~a~~lL-~~gG--------~l~~~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~~~Dhp~~~~~~~~~~ 698 (702)
T PRK11783 640 KDAKRLL-RPGG--------TLYFSNNKRGFKM--DEEGLAKLGLKAEEITAKTLPPDFARNPKIHNCWL 698 (702)
T ss_pred HHHHHHc-CCCC--------EEEEEeCCccCCh--hHHHHHhCCCeEEEEecCCCCCCCCCCcccceeEE
Confidence 9999999 9988 8888877766554 2677778899999998665555543 44555765
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-17 Score=157.92 Aligned_cols=160 Identities=17% Similarity=0.139 Sum_probs=113.1
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+.+...++.+|||||||+|.++..+++..|+.+|+|+|+|+.|++.|+++ +++++++|+... .+++
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~-----~~~~ 88 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDW-----KPKP 88 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhC-----CCCC
Confidence 33444555678999999999999999999988889999999999999999764 477888887532 1457
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccc---cccccceeecCCCceeeccCHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKD---QKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
+||+|+++.++||++ ++..++++++++|||||.+++..+.............. .................+.+.+
T Consensus 89 ~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 166 (255)
T PRK14103 89 DTDVVVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPA 166 (255)
T ss_pred CceEEEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence 899999999999996 67899999999999999999976542111111110000 0000000000000112246899
Q ss_pred HHHHHHHhCCCcEEEe
Q 008457 223 FLTSLFKENGFDVEEL 238 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~ 238 (564)
++.++|+++||.+...
T Consensus 167 ~~~~~l~~aGf~v~~~ 182 (255)
T PRK14103 167 GYAELLTDAGCKVDAW 182 (255)
T ss_pred HHHHHHHhCCCeEEEE
Confidence 9999999999986543
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-17 Score=155.29 Aligned_cols=201 Identities=20% Similarity=0.207 Sum_probs=133.8
Q ss_pred hhHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCCh
Q 008457 31 PFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSP 109 (564)
Q Consensus 31 ~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~ 109 (564)
......|+..+..| |..... ..+.. .......+...+...++.+|||+|||+|.++..+++.. ++.+|+|+|+|+
T Consensus 5 ~~~~~~f~~~a~~y-d~~~~~--~~~~~-~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 80 (231)
T TIGR02752 5 ERVHKVFEKIYKKY-DRMNSV--ISFQR-HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE 80 (231)
T ss_pred HHHHHHHHHhhhHH-hHHHHH--hcCCc-hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH
Confidence 44566777777665 432111 01111 22222344455555778999999999999999998874 678999999999
Q ss_pred HHHHHHHhccccc-CCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 110 RAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 110 ~~l~~a~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
.+++.|+++.... ..+++++++|+... ++++++||+|++..+++|++ ++..+++++.++|+|||.+++.+...
T Consensus 81 ~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 81 NMLSVGRQKVKDAGLHNVELVHGNAMEL----PFDDNSFDYVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred HHHHHHHHHHHhcCCCceEEEEechhcC----CCCCCCccEEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 9999999876432 25788899988543 45678999999999999985 67789999999999999999987655
Q ss_pred Cchhhhhh-c----c-cccccccce----eec--CCCceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 189 GDLAQERL-T----G-KDQKISENF----YVR--GDGTRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 189 ~~~~~~~~-~----~-~~~~~~~~~----~~~--~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
+.....+. . . ..+.....+ ... .......+++.+++.++++++||..+++...
T Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 219 (231)
T TIGR02752 155 PTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSY 219 (231)
T ss_pred CCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEc
Confidence 43221110 0 0 000000000 000 0011123568999999999999998865443
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-17 Score=147.34 Aligned_cols=141 Identities=26% Similarity=0.374 Sum_probs=105.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..++.+|||||||+|.++..+++. +.+++|+|+++.+++. .++.....+.... ..++++||+|+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~~----~~~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK---------RNVVFDNFDAQDP----PFPDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH---------TTSEEEEEECHTH----HCHSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh---------hhhhhhhhhhhhh----hccccchhhHhh
Confidence 378899999999999999999777 5699999999999988 1122222222211 236789999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
+.+|+|++ ++..+|+++.++|||||.+++.++.........+..+.. ....+.+..+++.+++..+++++|
T Consensus 85 ~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ll~~~G 155 (161)
T PF13489_consen 85 NDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRY-------DRPYGGHVHFFSPDELRQLLEQAG 155 (161)
T ss_dssp ESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCG-------TCHHTTTTEEBBHHHHHHHHHHTT
T ss_pred HHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCC-------cCccCceeccCCHHHHHHHHHHCC
Confidence 99999996 799999999999999999999998865322222211110 010113345789999999999999
Q ss_pred CcEEE
Q 008457 233 FDVEE 237 (564)
Q Consensus 233 f~~~~ 237 (564)
|++++
T Consensus 156 ~~iv~ 160 (161)
T PF13489_consen 156 FEIVE 160 (161)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99875
|
... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=159.70 Aligned_cols=311 Identities=14% Similarity=0.187 Sum_probs=183.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
++.+|||+|||+|.++..++...|+.+|+++|+|+.+++.|+++....+ .++.++++|+.. .++.++||+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-----~~~~~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-----NIEKQKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-----hCcCCCccEEEE
Confidence 3568999999999999999988888999999999999999998865433 468888888743 234568999999
Q ss_pred ccc--------------ccCCC----------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccccccccee
Q 008457 153 VFV--------------LSAVS----------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFY 208 (564)
Q Consensus 153 ~~v--------------l~~~~----------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (564)
+-- ..|-| .+....+++++.+.|+|||.+++. .+.
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~-------------------- 271 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF-------------------- 271 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC--------------------
Confidence 531 11111 123456788899999999999874 221
Q ss_pred ecCCCceeeccCHHHHHHHHHhCCCcEEEeeeeeccccccccccccceeEEEEEEEecCCCCCCccchhhhhhhcccccc
Q 008457 209 VRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAII 288 (564)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (564)
-..+.+.+++.+.||..+.+.. ...++.+-+.....-+...+.+.... .+..+..
T Consensus 272 ----------~q~~~v~~~~~~~g~~~~~~~~---D~~g~~R~v~~~~~~~~rs~~rr~g~-----------~~~~~q~- 326 (506)
T PRK01544 272 ----------KQEEAVTQIFLDHGYNIESVYK---DLQGHSRVILISPINLNRSYARRIGK-----------SLSGVQQ- 326 (506)
T ss_pred ----------chHHHHHHHHHhcCCCceEEEe---cCCCCceEEEeccccCCcceeccCCC-----------CCCHHHH-
Confidence 1366788899999998665532 22222111100000001111111000 0010010
Q ss_pred hhhhhhhhhcCcCCCcccccchHHHHhhhCCCCCCCceEEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHH
Q 008457 289 EPDVAANTLKEPMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVL 368 (564)
Q Consensus 289 e~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l 368 (564)
. ..+.+.+ ..+. .|++ +.
T Consensus 327 --~--------------------~~e~~~p---------------------------------~~~i-~~ek------lf 344 (506)
T PRK01544 327 --N--------------------LLDNELP---------------------------------KYLF-SKEK------LV 344 (506)
T ss_pred --H--------------------HHHhhhh---------------------------------hhCC-CHHH------hC
Confidence 0 0000000 0000 0000 10
Q ss_pred hcCCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh
Q 008457 369 ARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI 447 (564)
Q Consensus 369 ~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~ 447 (564)
...+..+||||||.|.+...+|...+ ..++++|+....+..+.+.+...++ .++.+...+.. .+ .
T Consensus 345 -----~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l----~N~~~~~~~~~---~~--~ 410 (506)
T PRK01544 345 -----NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI----TNFLLFPNNLD---LI--L 410 (506)
T ss_pred -----CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC----CeEEEEcCCHH---HH--H
Confidence 11456899999999988777777654 5899999988877776666665554 34554433221 01 1
Q ss_pred hhhcCCCccEEEEe--ceeeCCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcC-
Q 008457 448 KEENNEGFEVILGT--DVSYIPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG- 518 (564)
Q Consensus 448 ~~~~~~~fD~Ii~~--d~~y~~~------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g- 518 (564)
..++++++|-|... |.-.-.. .-+.+++.+.++| +++| .+.+.+-...... ..++.+.+.+
T Consensus 411 ~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~L-k~gG--------~i~~~TD~~~y~~-~~~~~~~~~~~ 480 (506)
T PRK01544 411 NDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKL-KDNG--------NLVFASDIENYFY-EAIELIQQNGN 480 (506)
T ss_pred HhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhc-CCCC--------EEEEEcCCHHHHH-HHHHHHHhCCC
Confidence 12456788887632 3221111 5688999999999 9988 8877655443332 1234444444
Q ss_pred CeEE
Q 008457 519 FRLV 522 (564)
Q Consensus 519 ~~~~ 522 (564)
|+..
T Consensus 481 f~~~ 484 (506)
T PRK01544 481 FEII 484 (506)
T ss_pred eEec
Confidence 6554
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-16 Score=141.27 Aligned_cols=190 Identities=19% Similarity=0.271 Sum_probs=134.6
Q ss_pred HHHHHHHHhHhHHHHHHhhccccccccc--hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCC------cEEEEE
Q 008457 34 RDKYEREAKKYWDLFYKRHQDRFFKDRH--YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD------VFVYAC 105 (564)
Q Consensus 34 ~~~y~~~a~~ywd~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~------~~v~~i 105 (564)
...|+..|+.| |..+ +...-..| | ...+...+.+.+++++||++||||..+..+++..+. .+|+.+
T Consensus 63 ~~vF~~vA~~Y-D~mN----D~mSlGiHRlW-Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~ 136 (296)
T KOG1540|consen 63 HHVFESVAKKY-DIMN----DAMSLGIHRLW-KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVL 136 (296)
T ss_pred HHHHHHHHHHH-HHHH----HHhhcchhHHH-HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEE
Confidence 44566666664 3322 22222333 3 334445567788999999999999999999988555 789999
Q ss_pred eCChHHHHHHHhcccccC----CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEE
Q 008457 106 DFSPRAVNLVMTHKDFTE----TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYV 181 (564)
Q Consensus 106 D~s~~~l~~a~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~l 181 (564)
|++|+|+..++++..+.+ ..+.++++|+.+. ||++++||+.++.+.+..++ ++.+.|++++|+|||||++
T Consensus 137 Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L----pFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf 210 (296)
T KOG1540|consen 137 DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL----PFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRF 210 (296)
T ss_pred eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC----CCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEE
Confidence 999999999998874322 3478899998543 68999999999999999995 8899999999999999999
Q ss_pred EEEecCCCch-hhhhh-----cccccccccceeecCCC--------ceeeccCHHHHHHHHHhCCCcEEE
Q 008457 182 LFRDYAIGDL-AQERL-----TGKDQKISENFYVRGDG--------TRAFYFSNDFLTSLFKENGFDVEE 237 (564)
Q Consensus 182 ii~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~l~~aGf~~~~ 237 (564)
.+.++..-.. ....+ ....+.+... .+++. ....+.+.+++..+.+++||..+.
T Consensus 211 ~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~--iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 211 SCLEFSKVENEPLKWFYDQYSFDVLPVLGEI--IAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred EEEEccccccHHHHHHHHhhhhhhhchhhHh--hhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 9988775441 21111 1112222211 11111 111256889999999999998875
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=147.73 Aligned_cols=149 Identities=20% Similarity=0.238 Sum_probs=111.2
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~ 143 (564)
..+.+.+...++.+|||+|||+|.++..|++. +.+|+|+|+|+.|++.+++.....+ .++++.+.|+... ++
T Consensus 20 ~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~----~~- 92 (197)
T PRK11207 20 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL----TF- 92 (197)
T ss_pred HHHHHhcccCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC----Cc-
Confidence 34444455567789999999999999999987 6799999999999999988765433 3578888887543 22
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF 223 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (564)
+++||+|+++.++||++++++..+++++.++|+|||++++......... . . .....+.++.++
T Consensus 93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~--~--------------~-~~~~~~~~~~~e 155 (197)
T PRK11207 93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY--P--------------C-TVGFPFAFKEGE 155 (197)
T ss_pred CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC--C--------------C-CCCCCCccCHHH
Confidence 3579999999999999878899999999999999999765433221100 0 0 001123468999
Q ss_pred HHHHHHhCCCcEEEee
Q 008457 224 LTSLFKENGFDVEELG 239 (564)
Q Consensus 224 l~~~l~~aGf~~~~~~ 239 (564)
+.++++ ||+++...
T Consensus 156 l~~~~~--~~~~~~~~ 169 (197)
T PRK11207 156 LRRYYE--GWEMVKYN 169 (197)
T ss_pred HHHHhC--CCeEEEee
Confidence 999997 89887653
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=144.42 Aligned_cols=171 Identities=16% Similarity=0.159 Sum_probs=119.9
Q ss_pred hHHHHHHhhccccc-cccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-
Q 008457 44 YWDLFYKRHQDRFF-KDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF- 121 (564)
Q Consensus 44 ywd~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~- 121 (564)
+|+..|......+- ...+.....+.+.+...++.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+....
T Consensus 2 ~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~ 79 (213)
T TIGR03840 2 FWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLT 79 (213)
T ss_pred hHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCC
Confidence 67777766543332 222322233333332246789999999999999999998 89999999999999986442211
Q ss_pred ------------cCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 122 ------------TETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 122 ------------~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
...++++.++|+..... -..+.||.|+...+++|++++....+++.+.++|||||++++..+...
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 80 PTVTQQGEFTRYRAGNIEIFCGDFFALTA---ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred cceeccccceeeecCceEEEEccCCCCCc---ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 23568899999965431 123579999999999999999999999999999999998777655432
Q ss_pred chhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 190 DLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
... .+...+.++.+++.++|.. +|.+....
T Consensus 157 ~~~-------------------~~gpp~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 157 QSE-------------------MAGPPFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred CCC-------------------CCCcCCCCCHHHHHHHhcC-CceEEEEe
Confidence 110 0112235689999999963 56665543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=146.01 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=110.3
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++....+.++.+...|+... ++ ++
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~----~~-~~ 93 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA----AL-NE 93 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc----cc-cC
Confidence 3344444456789999999999999999987 68999999999999999887654444567777776432 22 35
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+||+|+++.++||++.++...++++++++|||||++++.++...... .. .....+.++++++.
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~----------------~~-~~~~~~~~~~~el~ 156 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADY----------------PC-HMPFSFTFKEDELR 156 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCC----------------CC-CCCcCccCCHHHHH
Confidence 79999999999999877889999999999999999776554321110 00 01112356899999
Q ss_pred HHHHhCCCcEEEee
Q 008457 226 SLFKENGFDVEELG 239 (564)
Q Consensus 226 ~~l~~aGf~~~~~~ 239 (564)
++|. +|+++...
T Consensus 157 ~~f~--~~~~~~~~ 168 (195)
T TIGR00477 157 QYYA--DWELLKYN 168 (195)
T ss_pred HHhC--CCeEEEee
Confidence 9996 58887654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-16 Score=152.78 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=113.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||+|.++..+++..++.+|+++|+|+.|++.|+++.. ..+++++.+|+... ++++++||+|+++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~l----p~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDL----PFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhC----CCCCCceeEEEEc
Confidence 46789999999999999999888777899999999999999998754 24678888888543 4577899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.+++|++ +...++++++++|||||.+++.+......+..+.. .. ....+.+.+++.++++++||
T Consensus 186 ~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~------~~--------~~~~~~t~eEl~~lL~~aGF 249 (340)
T PLN02490 186 GSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFF------AD--------VWMLFPKEEEYIEWFTKAGF 249 (340)
T ss_pred ChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHh------hh--------hhccCCCHHHHHHHHHHCCC
Confidence 9999996 56789999999999999998865443221111110 00 00113478999999999999
Q ss_pred cEEEeeeee
Q 008457 234 DVEELGLCC 242 (564)
Q Consensus 234 ~~~~~~~~~ 242 (564)
+.+++....
T Consensus 250 ~~V~i~~i~ 258 (340)
T PLN02490 250 KDVKLKRIG 258 (340)
T ss_pred eEEEEEEcC
Confidence 998876543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=133.75 Aligned_cols=107 Identities=23% Similarity=0.364 Sum_probs=89.9
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc--cccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK--DFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~--~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
|+.+|||+|||+|.++..+++..++.+|+|+|+|+.+++.|+++. .....++++++.|+ .... . ..+.||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~-~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP--D-FLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT--T-TSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc--c-cCCCCCEEEE
Confidence 578999999999999999999777999999999999999999987 33458999999999 2221 1 3456999999
Q ss_pred cc-cccCCC-hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 153 VF-VLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 153 ~~-vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.. +++++. .++...+++++.+.|+|||++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99 666443 3678899999999999999999875
|
... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=153.16 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=114.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHh--CCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
.++.+|||||||+|..+..+++. .|+.+++|+|+|+.|++.|+++.... ..+++++++|+... +...+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~------~~~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI------AIENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC------CCCCCCE
Confidence 57789999999999999888873 57899999999999999999987543 24789999988542 2245899
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCc-hh-hhhhcccccccc-cceeec----C--C--Cceeec
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD-LA-QERLTGKDQKIS-ENFYVR----G--D--GTRAFY 218 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~-~~-~~~~~~~~~~~~-~~~~~~----~--~--~~~~~~ 218 (564)
|+++.++||+++++...++++++++|||||.+++.+..... .. ...+........ ..-+.. . . ......
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~ 208 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLT 208 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccc
Confidence 99999999998777889999999999999999998744321 11 111111000000 000000 0 0 011224
Q ss_pred cCHHHHHHHHHhCCCcEEEeeee
Q 008457 219 FSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 219 ~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
.+.++..++|+++||..+...+.
T Consensus 209 ~~~~~~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 209 DSVETHKARLHKAGFEHSELWFQ 231 (247)
T ss_pred CCHHHHHHHHHHcCchhHHHHHH
Confidence 68999999999999987655443
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-16 Score=148.72 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=123.7
Q ss_pred hHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHH
Q 008457 32 FWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRA 111 (564)
Q Consensus 32 ~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~ 111 (564)
.....|++.+..| +.+.. -.......+.+.+...++.+|||+|||+|.++..++.. +.+|+++|+|+.|
T Consensus 8 ~i~~~F~~aa~~Y-~~~~~--------~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~ 76 (251)
T PRK10258 8 AIAAAFGRAAAHY-EQHAE--------LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPM 76 (251)
T ss_pred HHHHHHHHHHHhH-hHHHH--------HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHH
Confidence 3455677766665 22110 11123344445555456789999999999999988876 6899999999999
Q ss_pred HHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch
Q 008457 112 VNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL 191 (564)
Q Consensus 112 l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~ 191 (564)
++.|+++.. ...++++|+... ++++++||+|+++.+++|.+ ++..++.++.++|+|||.++++.+.....
T Consensus 77 l~~a~~~~~----~~~~~~~d~~~~----~~~~~~fD~V~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 146 (251)
T PRK10258 77 LAQARQKDA----ADHYLAGDIESL----PLATATFDLAWSNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLVQGSL 146 (251)
T ss_pred HHHHHhhCC----CCCEEEcCcccC----cCCCCcEEEEEECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence 999988753 246788888542 45778999999999999984 78899999999999999999998876553
Q ss_pred hhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcE
Q 008457 192 AQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDV 235 (564)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 235 (564)
....- ....+. .......+++.+++..++...|+..
T Consensus 147 ~el~~--~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 147 PELHQ--AWQAVD------ERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred HHHHH--HHHHhc------cCCccccCCCHHHHHHHHHhCCcee
Confidence 32211 000000 0112223678999999999888764
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=148.64 Aligned_cols=195 Identities=23% Similarity=0.260 Sum_probs=131.0
Q ss_pred hHHHHHHHHHhHhHHHHHHhhcc--ccc----cccchhHHHHhhhcc--CCCCCeEEEEcCCccccHHHHHHhCCCcEEE
Q 008457 32 FWRDKYEREAKKYWDLFYKRHQD--RFF----KDRHYLDKEWGRYFS--GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVY 103 (564)
Q Consensus 32 ~~~~~y~~~a~~ywd~~~~~~~~--~~~----~~~~~~~~~~~~~l~--~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~ 103 (564)
....+|+.....-|+..|..+.. ... .....+...+.+.+. ..++.+|||+|||+|.++..++.. +.+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~ 81 (219)
T TIGR02021 4 QVRHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVK 81 (219)
T ss_pred HHHHHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEE
Confidence 34556666666678776653211 000 111122333444444 356899999999999999999887 67899
Q ss_pred EEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEE
Q 008457 104 ACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYV 181 (564)
Q Consensus 104 ~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~l 181 (564)
|+|+|+.|++.|+++..... .++.+.++|+... + ++||+|++..+++|++.+++..+++++.+++++++.+
T Consensus 82 gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~-~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i 154 (219)
T TIGR02021 82 AVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL------C-GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIF 154 (219)
T ss_pred EEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC------C-CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999998865433 4788999888542 2 7899999999999998778889999999999987666
Q ss_pred EEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 182 LFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 182 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
.+..... ..... ..+...+.........++++++++.++++++||+++......
T Consensus 155 ~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 155 TFAPKTA---WLAFL----KMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred EECCCch---HHHHH----HHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 5532211 11100 001111111111233456799999999999999998776544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=151.06 Aligned_cols=158 Identities=20% Similarity=0.175 Sum_probs=111.8
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhc--ccccCCCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH--KDFTETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~--~~~~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+...++.+|||||||+|.++..+++.++ ..|+|+|+|+.++..++.. ......++.+..+|+.. + ++ +++|
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~--l--p~-~~~F 190 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ--L--PA-LKAF 190 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH--C--CC-cCCc
Confidence 45456789999999999999999998853 3699999999998765433 22123578899888853 2 33 6789
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHH
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
|+|+|..+++|. .++..+|+++++.|+|||.+++.+.............. ..|... ....+..+.+++..+
T Consensus 191 D~V~s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~------~~y~~~-~~~~~lps~~~l~~~ 261 (322)
T PRK15068 191 DTVFSMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG------DRYAKM-RNVYFIPSVPALKNW 261 (322)
T ss_pred CEEEECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch------hHHhcC-ccceeCCCHHHHHHH
Confidence 999999999998 47889999999999999999997654322111100000 000000 001123488999999
Q ss_pred HHhCCCcEEEeeeee
Q 008457 228 FKENGFDVEELGLCC 242 (564)
Q Consensus 228 l~~aGf~~~~~~~~~ 242 (564)
++++||+.+++....
T Consensus 262 L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 262 LERAGFKDVRIVDVS 276 (322)
T ss_pred HHHcCCceEEEEeCC
Confidence 999999998775543
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=151.33 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=121.8
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+...+|++|||||||.|.++..+++++ +++|+|+++|+++.+.++++....+ .++++...|..+ ..+
T Consensus 65 ~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd-------~~e 136 (283)
T COG2230 65 LEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD-------FEE 136 (283)
T ss_pred HHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc-------ccc
Confidence 345666999999999999999999999998 8999999999999999999765444 568888888854 235
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
.||.|++..+++|+..+....+++.++++|+|||.+++.+......... .....+...++ .++.. .+...+.
T Consensus 137 ~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiF--PgG~l---Ps~~~i~ 208 (283)
T COG2230 137 PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIF--PGGEL---PSISEIL 208 (283)
T ss_pred ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHHhCC--CCCcC---CCHHHHH
Confidence 5999999999999998889999999999999999999987765543221 11111112222 12222 2678888
Q ss_pred HHHHhCCCcEEEeee
Q 008457 226 SLFKENGFDVEELGL 240 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~ 240 (564)
+..+++||.+.....
T Consensus 209 ~~~~~~~~~v~~~~~ 223 (283)
T COG2230 209 ELASEAGFVVLDVES 223 (283)
T ss_pred HHHHhcCcEEehHhh
Confidence 889999999876544
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-16 Score=149.11 Aligned_cols=159 Identities=19% Similarity=0.220 Sum_probs=113.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHh--CCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
.++.+|||+|||+|.++..+++. .|+++++|+|+|+.|++.|+++.... ..+++++++|+.... ...+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE------IKNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC------CCCCCE
Confidence 46789999999999999999886 46899999999999999999876532 246889999986432 235899
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch-hhhh-hcccccccc--ccee-------ecCCCceeec
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL-AQER-LTGKDQKIS--ENFY-------VRGDGTRAFY 218 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~-~~~~-~~~~~~~~~--~~~~-------~~~~~~~~~~ 218 (564)
|++..++||+++++...++++++++|||||.+++.++..... .... +........ ..+- ...-......
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 205 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRT 205 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCC
Confidence 999999999987788999999999999999999988654321 1111 000000000 0000 0000011235
Q ss_pred cCHHHHHHHHHhCCCcEEEe
Q 008457 219 FSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 219 ~~~~~l~~~l~~aGf~~~~~ 238 (564)
++.+++..+++++||..+..
T Consensus 206 ~s~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 206 DSIETHKARLKNVGFSHVEL 225 (239)
T ss_pred CCHHHHHHHHHHcCCchHHH
Confidence 69999999999999986543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-16 Score=148.66 Aligned_cols=201 Identities=18% Similarity=0.189 Sum_probs=133.4
Q ss_pred CCChhHHHHHHHHHhHhHHHHHHhhccccccccchh-HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEe
Q 008457 28 GVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYL-DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACD 106 (564)
Q Consensus 28 ~~~~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD 106 (564)
+..+....+|+..|..||+.+......+ ..... ...+...+...++.+|||||||+|.++..+++. +.+++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD 77 (233)
T PRK05134 3 NVDPAEIAKFSALAARWWDPNGEFKPLH---RINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGID 77 (233)
T ss_pred cccHHHHHHHHHHHHHHhccCCCcHHHH---HhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEc
Confidence 3455677899999999998742111100 00111 122223333467899999999999999988876 67899999
Q ss_pred CChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 107 FSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 107 ~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+++.+++.++++.......+.+...++.... ....++||+|++..+++|++ ++..+++.+.++|+|||.+++..+
T Consensus 78 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 78 ASEENIEVARLHALESGLKIDYRQTTAEELA---AEHPGQFDVVTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEecCHHHhh---hhcCCCccEEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999999998876544445677776664321 12357899999999999995 677899999999999999999876
Q ss_pred CCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 187 AIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
........... ........+..........+++.+++.++++++||+++...
T Consensus 153 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 153 NRNLKSYLLAI-VGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred CCChHHHHHHH-hhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 53221111000 00000000111111222346789999999999999988753
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-16 Score=135.62 Aligned_cols=161 Identities=23% Similarity=0.324 Sum_probs=115.2
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-cCCCee-EEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVS-TFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-~~~~i~-~~~~d~~~~~~~~~~~~~~f 147 (564)
++.......||+||||||..-. +....|++.|+++|+++.|-+.|.++... ...++. |+.++..+ ++ .+++++|
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfk-fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~--l~-~l~d~s~ 146 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFK-FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGEN--LP-QLADGSY 146 (252)
T ss_pred HhcccCccceEEecccCCCCcc-cccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhc--Cc-ccccCCe
Confidence 4444667789999999998843 33444789999999999999999887653 335565 77777644 21 3589999
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHH
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
|+|++..+|+.. +++.+.|+++.|+|||||++++.++.......... -+.+...+.++...+|++. +++.+ +.
T Consensus 147 DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~-i~q~v~ep~~~~~~dGC~l---trd~~-e~ 219 (252)
T KOG4300|consen 147 DTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNR-ILQQVAEPLWHLESDGCVL---TRDTG-EL 219 (252)
T ss_pred eeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHHHH-HHHHHhchhhheeccceEE---ehhHH-HH
Confidence 999999999988 68999999999999999999999998765322111 1122222223344456554 55554 67
Q ss_pred HHhCCCcEEEeeee
Q 008457 228 FKENGFDVEELGLC 241 (564)
Q Consensus 228 l~~aGf~~~~~~~~ 241 (564)
++++-|+.......
T Consensus 220 Leda~f~~~~~kr~ 233 (252)
T KOG4300|consen 220 LEDAEFSIDSCKRF 233 (252)
T ss_pred hhhcccccchhhcc
Confidence 78888988765443
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=127.46 Aligned_cols=95 Identities=26% Similarity=0.300 Sum_probs=81.4
Q ss_pred EEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCC
Q 008457 80 LEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAV 159 (564)
Q Consensus 80 LDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~ 159 (564)
||+|||+|..+..+++. ++.+|+++|+++.+++.++++... .++.+.+.|+... |+++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l----~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDL----PFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSS----SS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhC----ccccccccccccccceeec
Confidence 89999999999999998 688999999999999999998753 3455888887643 6789999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCeEEEE
Q 008457 160 SPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 160 ~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+++..+++++.|+|||||++++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 6899999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-16 Score=151.92 Aligned_cols=164 Identities=16% Similarity=0.211 Sum_probs=112.2
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+.+.+...++.+|||||||.|.++..+++++ +++|+|+.+|++..+.++++....+ .++++...|..+.
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~------- 124 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL------- 124 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-------
Confidence 33445566899999999999999999999997 8999999999999999998876544 5788999988542
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccc-ccccccceeecCCCceeeccCHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGK-DQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
+.+||.|++..+++|+...+...+++++.++|||||.+++................ ...+....| ..+. ..+..
T Consensus 125 ~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiF--Pgg~---lps~~ 199 (273)
T PF02353_consen 125 PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIF--PGGY---LPSLS 199 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTS--TTS------BHH
T ss_pred CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeC--CCCC---CCCHH
Confidence 23999999999999998888999999999999999999997666544322211110 111222222 1222 23678
Q ss_pred HHHHHHHhCCCcEEEeeeee
Q 008457 223 FLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~~ 242 (564)
++...++++||++.......
T Consensus 200 ~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 200 EILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHHHTT-EEEEEEE-H
T ss_pred HHHHHHhcCCEEEEEEEEcC
Confidence 88889999999988765543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=162.06 Aligned_cols=157 Identities=21% Similarity=0.259 Sum_probs=118.9
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+.+...++.+|||||||+|..+..+++.. +++|+|+|+|+.+++.|+++......++++.++|+... +++++
T Consensus 257 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~----~~~~~ 331 (475)
T PLN02336 257 EFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK----TYPDN 331 (475)
T ss_pred HHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC----CCCCC
Confidence 33444444678899999999999999888875 78999999999999999887654456789999998643 45678
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhh-hhhcccccccccceeecCCCceeeccCHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ-ERLTGKDQKISENFYVRGDGTRAFYFSNDFL 224 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (564)
+||+|++..+++|++ ++..++++++++|||||.+++.++....... ..+.... ...+ ....+.+++
T Consensus 332 ~fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~---------~~~g--~~~~~~~~~ 398 (475)
T PLN02336 332 SFDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYI---------KQRG--YDLHDVQAY 398 (475)
T ss_pred CEEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHH---------HhcC--CCCCCHHHH
Confidence 999999999999995 7889999999999999999998875432110 0000000 0011 124588999
Q ss_pred HHHHHhCCCcEEEeee
Q 008457 225 TSLFKENGFDVEELGL 240 (564)
Q Consensus 225 ~~~l~~aGf~~~~~~~ 240 (564)
.++++++||+++....
T Consensus 399 ~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 399 GQMLKDAGFDDVIAED 414 (475)
T ss_pred HHHHHHCCCeeeeeec
Confidence 9999999999886543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=149.11 Aligned_cols=152 Identities=22% Similarity=0.255 Sum_probs=105.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc------CCCeeEEEecCCcccccCCCCCCcee
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT------ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~------~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++.... ..++.|...|+.. .+++||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-------l~~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-------LSGKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-------cCCCcC
Confidence 5789999999999999999987 789999999999999999886532 2457788887632 247899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHH
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLF 228 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 228 (564)
+|+|..+++|++.+....+++.+.+ +.+||.++ .. .+..... .+. ..+.+.+.........++++.+++++++
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~-~p~~~~~-~~l---~~~g~~~~g~~~~~r~y~~s~eel~~lL 287 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SF-APKTLYY-DIL---KRIGELFPGPSKATRAYLHAEADVERAL 287 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-Ee-CCcchHH-HHH---HHHHhhcCCCCcCceeeeCCHHHHHHHH
Confidence 9999999999986666677887775 45665544 32 2221111 111 1111111111112334566899999999
Q ss_pred HhCCCcEEEeeeee
Q 008457 229 KENGFDVEELGLCC 242 (564)
Q Consensus 229 ~~aGf~~~~~~~~~ 242 (564)
+++||++.......
T Consensus 288 ~~AGf~v~~~~~~~ 301 (315)
T PLN02585 288 KKAGWKVARREMTA 301 (315)
T ss_pred HHCCCEEEEEEEee
Confidence 99999988665543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=144.56 Aligned_cols=158 Identities=21% Similarity=0.204 Sum_probs=111.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHh----CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA----YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
.++.+|||+|||+|.++..|++. +++.+|+|+|+|+.|++.|+++... .++.+.+.+.... +.++++||+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~l----~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--PGVTFRQAVSDEL----VAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--CCCeEEEEecccc----cccCCCccE
Confidence 56789999999999998888753 4567999999999999999887542 3456666654322 235689999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCce--eeccCHHHHHHH
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTR--AFYFSNDFLTSL 227 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~ 227 (564)
|+++.++||+++++...+++++.++++ |.+++.+..........+...........+...++.. ..+++.+++.++
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l 210 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL 210 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHH
Confidence 999999999986667889999999998 6667776665532221111111111112222233322 237899999999
Q ss_pred HHhCCCcEEEeee
Q 008457 228 FKENGFDVEELGL 240 (564)
Q Consensus 228 l~~aGf~~~~~~~ 240 (564)
+++ ||++...+.
T Consensus 211 l~~-Gf~~~~~~~ 222 (232)
T PRK06202 211 APQ-GWRVERQWP 222 (232)
T ss_pred hhC-CCeEEeccc
Confidence 999 999876544
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-15 Score=139.17 Aligned_cols=173 Identities=16% Similarity=0.188 Sum_probs=119.6
Q ss_pred HhHHHHHHhhccccc-cccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc
Q 008457 43 KYWDLFYKRHQDRFF-KDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF 121 (564)
Q Consensus 43 ~ywd~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~ 121 (564)
.+|+..|......+. ...+.....+...+...++.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+....
T Consensus 4 ~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l 81 (218)
T PRK13255 4 DFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGL 81 (218)
T ss_pred hHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCC
Confidence 468877766543331 233322222322233356789999999999999999998 89999999999999987432211
Q ss_pred -------------cCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 122 -------------TETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 122 -------------~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
...++++.++|+..... -..+.||.|+...+++|++++....+++.+.++|+|||++++..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~---~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 82 TPQTRQSGEFEHYQAGEITIYCGDFFALTA---ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred CccccccccccccccCceEEEECcccCCCc---ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 13578889999875421 12358999999999999999999999999999999999766543332
Q ss_pred CchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 189 GDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
.... .+..++.++.+++.++|.. +|.+.....
T Consensus 159 ~~~~-------------------~~gPp~~~~~~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 159 PQEE-------------------LAGPPFSVSDEEVEALYAG-CFEIELLER 190 (218)
T ss_pred CCcc-------------------CCCCCCCCCHHHHHHHhcC-CceEEEeee
Confidence 1110 0112235699999999953 377765543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=148.75 Aligned_cols=160 Identities=18% Similarity=0.131 Sum_probs=109.6
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhc--ccccCCCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH--KDFTETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~--~~~~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+...++.+|||||||+|.++..++..++ ..|+|+|+|+.|+..++.. ......++.+..+++.. + + +..+|
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~--l--p-~~~~F 189 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ--L--H-ELYAF 189 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH--C--C-CCCCc
Confidence 34456789999999999999988888743 3799999999998765432 11223467777777643 2 2 23589
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHH
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
|+|+|..+++|++ ++..+|++++++|||||.|++.+.............. ..+.. -....+..+.+++..+
T Consensus 190 D~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~------~ry~k-~~nv~flpS~~~L~~~ 260 (314)
T TIGR00452 190 DTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK------DRYAK-MKNVYFIPSVSALKNW 260 (314)
T ss_pred CEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch------HHHHh-ccccccCCCHHHHHHH
Confidence 9999999999994 7889999999999999999997654322110000000 00000 0011123589999999
Q ss_pred HHhCCCcEEEeeeeecc
Q 008457 228 FKENGFDVEELGLCCKQ 244 (564)
Q Consensus 228 l~~aGf~~~~~~~~~~~ 244 (564)
++++||+.+++......
T Consensus 261 L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 261 LEKVGFENFRILDVLKT 277 (314)
T ss_pred HHHCCCeEEEEEeccCC
Confidence 99999999876554433
|
Known examples to date are restricted to the proteobacteria. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-15 Score=147.43 Aligned_cols=140 Identities=17% Similarity=0.266 Sum_probs=108.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+.++++...|+.... .+++||+|++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-----~~~~fD~I~~~ 191 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-----IQEEYDFILST 191 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-----ccCCccEEEEc
Confidence 44569999999999999999987 789999999999999998877655557888888875422 25789999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.+++|+++++...+++++.++|+|||++++......... . ......+.+++.++.+.+.. |
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~----------------~-~~~p~~~~~~~~el~~~~~~--~ 252 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY----------------P-CPMPFSFTFKEGELKDYYQD--W 252 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC----------------C-CCCCCCcccCHHHHHHHhCC--C
Confidence 999999878899999999999999999776543321110 0 01112335789999999964 8
Q ss_pred cEEEee
Q 008457 234 DVEELG 239 (564)
Q Consensus 234 ~~~~~~ 239 (564)
+++...
T Consensus 253 ~i~~~~ 258 (287)
T PRK12335 253 EIVKYN 258 (287)
T ss_pred EEEEEe
Confidence 887754
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=135.87 Aligned_cols=146 Identities=21% Similarity=0.266 Sum_probs=106.1
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCc
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
+.+.+...++.++||+|||.|+.+..|+++ |..|+++|.|+.+++.+++.....+..++..+.|+....+ ++.
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~-----~~~ 94 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF-----PEE 94 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS------TTT
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc-----cCC
Confidence 333344457899999999999999999999 8999999999999999888766566778999999865432 368
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
||+|++..+++|++++....+++.+...++|||++++..+...+.. +. .....+.+.+.++..
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~----------------p~-~~~~~f~~~~~EL~~ 157 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDY----------------PC-PSPFPFLLKPGELRE 157 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS-------------------SS--S--B-TTHHHH
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCC----------------CC-CCCCCcccCHHHHHH
Confidence 9999999999999999999999999999999999988655422110 00 111233467888988
Q ss_pred HHHhCCCcEEEe
Q 008457 227 LFKENGFDVEEL 238 (564)
Q Consensus 227 ~l~~aGf~~~~~ 238 (564)
.+. ||+++..
T Consensus 158 ~y~--dW~il~y 167 (192)
T PF03848_consen 158 YYA--DWEILKY 167 (192)
T ss_dssp HTT--TSEEEEE
T ss_pred HhC--CCeEEEE
Confidence 886 6888764
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-15 Score=145.44 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=113.2
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
..+...+...++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.|+++. .++.+..+|+... .+.
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~-----~~~ 91 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASW-----QPP 91 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhcc-----CCC
Confidence 3444555556789999999999999999999888899999999999999998875 3578888888532 145
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccc---cccccceeecCCCceeeccCH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKD---QKISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 221 (564)
++||+|+++.++||++ +...+++++.++|||||.+++..+.............. ......+. ........+.+.
T Consensus 92 ~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~ 168 (258)
T PRK01683 92 QALDLIFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLP-DRGARRAPLPPP 168 (258)
T ss_pred CCccEEEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhc-cccccCcCCCCH
Confidence 6899999999999995 67889999999999999999875332111111100000 00000000 001011234578
Q ss_pred HHHHHHHHhCCCcEEE
Q 008457 222 DFLTSLFKENGFDVEE 237 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~ 237 (564)
..+.+++.++|+.+..
T Consensus 169 ~~~~~~l~~~g~~v~~ 184 (258)
T PRK01683 169 HAYYDALAPAACRVDI 184 (258)
T ss_pred HHHHHHHHhCCCceee
Confidence 8899999999987543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=143.38 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=126.8
Q ss_pred hHHHHHHHHHhHhHHHHHHhhcccccc-----ccchhHHHHhhhcc---CCCCCeEEEEcCCccccHHHHHHhCCCcEEE
Q 008457 32 FWRDKYEREAKKYWDLFYKRHQDRFFK-----DRHYLDKEWGRYFS---GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVY 103 (564)
Q Consensus 32 ~~~~~y~~~a~~ywd~~~~~~~~~~~~-----~~~~~~~~~~~~l~---~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~ 103 (564)
...++|++.+...|+..|....-.... ........+...+. ..++.+|||||||+|.++..+++. +.+|+
T Consensus 12 ~v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~--~~~v~ 89 (230)
T PRK07580 12 EVRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR--GAKVV 89 (230)
T ss_pred hhhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc--CCEEE
Confidence 456678887777888877542111110 01111122223332 256789999999999999999887 56799
Q ss_pred EEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEE
Q 008457 104 ACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYV 181 (564)
Q Consensus 104 ~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~l 181 (564)
|+|+|+.|++.|+++....+ .++.+..+|+. ..+++||+|++..+++|++..+...+++++.+.+++++.+
T Consensus 90 ~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 90 ASDISPQMVEEARERAPEAGLAGNITFEVGDLE-------SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred EEECCHHHHHHHHHHHHhcCCccCcEEEEcCch-------hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 99999999999998765433 37888888842 2357899999999999998778889999999987655544
Q ss_pred EEEecCCCchhhhhhcccccccccceee-cCCCceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 182 LFRDYAIGDLAQERLTGKDQKISENFYV-RGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 182 ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
.+. ..... ...... +. ..+. ........+++..++.++++++||++.......
T Consensus 163 ~~~--~~~~~--~~~~~~---l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 163 TFA--PYTPL--LALLHW---IG-GLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred EEC--CccHH--HHHHHH---hc-cccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 332 11110 000000 10 1111 111223345789999999999999998775543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=143.22 Aligned_cols=144 Identities=22% Similarity=0.329 Sum_probs=112.4
Q ss_pred CeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 77 ~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
.+|||||||+|.++..+++.+++++|+|+|+|+.+++.|+++.... ..++++...|+... ++ .++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~----~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD----PF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC----CC-CCCCCEeehHH
Confidence 3799999999999999999888889999999999999999876542 35788998888543 22 35899999999
Q ss_pred cccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCc
Q 008457 155 VLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFD 234 (564)
Q Consensus 155 vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 234 (564)
+++|++ +...++++++++|||||.+++.++...... ... ......++.+.++|.++++++||+
T Consensus 76 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----~~~----------~~~~~~~~~s~~~~~~~l~~~Gf~ 138 (224)
T smart00828 76 VIHHIK--DKMDLFSNISRHLKDGGHLVLADFIANLLS-----AIE----------HEETTSYLVTREEWAELLARNNLR 138 (224)
T ss_pred HHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcccccCc-----ccc----------ccccccccCCHHHHHHHHHHCCCe
Confidence 999995 678999999999999999999876432100 000 011122356899999999999999
Q ss_pred EEEeeeee
Q 008457 235 VEELGLCC 242 (564)
Q Consensus 235 ~~~~~~~~ 242 (564)
+++.....
T Consensus 139 ~~~~~~~~ 146 (224)
T smart00828 139 VVEGVDAS 146 (224)
T ss_pred EEEeEECc
Confidence 98765443
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=133.84 Aligned_cols=193 Identities=18% Similarity=0.114 Sum_probs=136.6
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
..+...+......+|.|+|||+|..+..|+++.|+..++|+|.|++|++.|+++. .+++|..+|+.... +.
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~-----p~ 90 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWK-----PE 90 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcC-----CC
Confidence 3444555667889999999999999999999999999999999999999998875 47899999987543 56
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCC--CceeeccCHH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGD--GTRAFYFSND 222 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 222 (564)
...|+++++.+|++++ +-..+|.++...|.|||.|.+.-+..-+......+.....-...--...+ ..+....++.
T Consensus 91 ~~~dllfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a 168 (257)
T COG4106 91 QPTDLLFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPA 168 (257)
T ss_pred Cccchhhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHH
Confidence 7899999999999997 56789999999999999999975544333333332211110000000001 1233356888
Q ss_pred HHHHHHHhCCCcEEEeeeeeccccccccccccceeEEEEEEEecCCCCC
Q 008457 223 FLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGGATS 271 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 271 (564)
.+-++|...+-++......+......... ...|+..+.-+|--...
T Consensus 169 ~Yy~lLa~~~~rvDiW~T~Y~h~l~~a~a---IvdWvkgTgLrP~L~~L 214 (257)
T COG4106 169 AYYELLAPLACRVDIWHTTYYHQLPGADA---IVDWVKGTGLRPYLDRL 214 (257)
T ss_pred HHHHHhCcccceeeeeeeeccccCCCccc---hhhheeccccceecccc
Confidence 99999988877765544444433332332 35699888777774444
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=135.67 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=129.6
Q ss_pred CCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCC
Q 008457 351 RSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLA 429 (564)
Q Consensus 351 ~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~ 429 (564)
...|+..=-.+++|++|..- ...++|||||||+|.++.+++.+. ..+|+++|+++++.+++++|++.|.+. +
T Consensus 23 ~~~~~~~~~DaiLL~~~~~~----~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~---~ 95 (248)
T COG4123 23 DRCGFRYGTDAILLAAFAPV----PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE---E 95 (248)
T ss_pred CCCccccccHHHHHHhhccc----ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch---h
Confidence 34556666788999999743 248899999999998888888874 479999999999999999999999986 6
Q ss_pred ceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCC------------------ChHHHHHHHHHHhhccCCCCCCC
Q 008457 430 KLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE------------------AILPLFATAKELTASSNKSLRED 491 (564)
Q Consensus 430 ~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~------------------~~~~l~~~~~~ll~~~~g~~~~~ 491 (564)
++.+.+.|..+.. +.....+||+|+++...|... .++.++++...+| |++|
T Consensus 96 ri~v~~~Di~~~~-----~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~l-k~~G----- 164 (248)
T COG4123 96 RIQVIEADIKEFL-----KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLL-KPGG----- 164 (248)
T ss_pred ceeEehhhHHHhh-----hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHc-cCCC-----
Confidence 7787766644321 122344799999998777532 6899999999999 9998
Q ss_pred CCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCCCCCCCCcccccc
Q 008457 492 QQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIIS 539 (564)
Q Consensus 492 ~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 539 (564)
.+.++++..+. .++++.+.+.+|.+.++.-+.+..+..-+++.
T Consensus 165 ---~l~~V~r~erl--~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vL 207 (248)
T COG4123 165 ---RLAFVHRPERL--AEIIELLKSYNLEPKRIQFVYPKIGKAANRVL 207 (248)
T ss_pred ---EEEEEecHHHH--HHHHHHHHhcCCCceEEEEecCCCCCcceEEE
Confidence 87777665554 46899999999999999877666665555444
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=133.15 Aligned_cols=109 Identities=23% Similarity=0.398 Sum_probs=92.6
Q ss_pred CCCCeEEEEcCCccccHHHHH-HhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLI-AAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~-~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..+.+|||+|||+|.++..++ +.+|+.+++|+|+|+.|++.|+++....+ .+++|.++|+.. ++..++ ++||+|+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~--l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED--LPQELE-EKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC--GCGCSS-TTEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc--cccccC-CCeeEEE
Confidence 467899999999999999999 45788999999999999999999765333 479999999976 321133 7999999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+..+++|++ ++..+++++.++|++||.+++.++.
T Consensus 79 ~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999995 7789999999999999999998776
|
... |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.2e-15 Score=136.84 Aligned_cols=163 Identities=25% Similarity=0.253 Sum_probs=122.1
Q ss_pred cCCCccceechhHHHHHHHHhcCCC------CCC-----CCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHH
Q 008457 349 TCRSTGLMLWESAHLMAAVLARNPT------IVA-----GKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLA 416 (564)
Q Consensus 349 ~~~~~G~~~W~~~~~l~~~l~~~~~------~~~-----~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~ 416 (564)
........+|+++-.++.++..+.. ... ..+|||||+||| +++++++. ....|+.||. +..+..++
T Consensus 48 ~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtg-lvG~~aa~~~~~~v~ltD~-~~~~~~L~ 125 (248)
T KOG2793|consen 48 LEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTG-LVGILAALLLGAEVVLTDL-PKVVENLK 125 (248)
T ss_pred cccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCcc-HHHHHHHHHhcceeccCCc-hhhHHHHH
Confidence 3456778999999999999887543 122 346999999999 66666655 7889999999 78888888
Q ss_pred HHHHhcCCCCC--CCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCc
Q 008457 417 QNVTANLKPPF--LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQP 494 (564)
Q Consensus 417 ~n~~~n~~~~~--~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~ 494 (564)
.|...|+.... ...+.+..++|++........ +..||+|+++||+|+++..+.|+.+++.+| ..++
T Consensus 126 ~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~---~~~~DlilasDvvy~~~~~e~Lv~tla~ll-~~~~-------- 193 (248)
T KOG2793|consen 126 FNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL---PNPFDLILASDVVYEEESFEGLVKTLAFLL-AKDG-------- 193 (248)
T ss_pred HhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc---CCcccEEEEeeeeecCCcchhHHHHHHHHH-hcCC--------
Confidence 88777766432 137999999999886654332 222999999999999999999999999999 7654
Q ss_pred EEEEEEeeccCCh---hHHHHHHHHcCCeEEEEc
Q 008457 495 AFILCHIFRQVDE---PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 495 ~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~~ 525 (564)
.+++.++.|+... ..++.......+.+....
T Consensus 194 ~i~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (248)
T KOG2793|consen 194 TIFLAYPLRRDAAWEIEVLLFKKDLKIFDVVQES 227 (248)
T ss_pred eEEEEEecccchHHHHHHHHhhhhhccceeeeEe
Confidence 8889988888532 223333344566666554
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=138.73 Aligned_cols=167 Identities=19% Similarity=0.233 Sum_probs=118.3
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccc--cCCCeeEEEecCCcccccCCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
...+...++.+|||+|||+|.++..+++.++ ..+++++|+++.+++.++++... ...++.+...|+... +++.
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~ 119 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL----PFPD 119 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC----CCCC
Confidence 3344445678999999999999999998875 58999999999999999988654 235688888888643 2356
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh-hhccc-----ccccccceeec-CC-----
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE-RLTGK-----DQKISENFYVR-GD----- 212 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~-~~----- 212 (564)
++||+|++..++++++ ++..+++++.++|+|||.+++.++........ ..... ..... .++.. ..
T Consensus 120 ~~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 196 (239)
T PRK00216 120 NSFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIG-KLISKNAEAYSYL 196 (239)
T ss_pred CCccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHH-HHHcCCcHHHHHH
Confidence 7899999999999995 67889999999999999999887654432110 00000 00000 00000 00
Q ss_pred -CceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 213 -GTRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 213 -~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
.....+++.+++.++|+++||+.+.....
T Consensus 197 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 226 (239)
T PRK00216 197 AESIRAFPDQEELAAMLEEAGFERVRYRNL 226 (239)
T ss_pred HHHHHhCCCHHHHHHHHHhCCCceeeeeee
Confidence 00122468899999999999998776553
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-15 Score=131.28 Aligned_cols=131 Identities=23% Similarity=0.302 Sum_probs=105.0
Q ss_pred CCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCc
Q 008457 351 RSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAK 430 (564)
Q Consensus 351 ~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~ 430 (564)
...++..|.+++.||+|+..||+..++++|||+|+|+|..++.++..+++.|+++|++|-.+..++.|+..|+..
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~----- 128 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS----- 128 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce-----
Confidence 446789999999999999999999999999999999995555555567889999999999999999999999853
Q ss_pred eEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC
Q 008457 431 LITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 505 (564)
Q Consensus 431 i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~ 505 (564)
+.+...|-.. .+..||+|+++|++|+...+..|+.+..++. ..+ ..+++..+.|..
T Consensus 129 i~~~~~d~~g----------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~-~~g--------~~vlvgdp~R~~ 184 (218)
T COG3897 129 ILFTHADLIG----------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLA-EAG--------AAVLVGDPGRAY 184 (218)
T ss_pred eEEeeccccC----------CCcceeEEEeeceecCchHHHHHHHHHHHHH-hCC--------CEEEEeCCCCCC
Confidence 4444433221 3568999999999999999999999666666 432 255566565644
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.9e-15 Score=141.00 Aligned_cols=163 Identities=24% Similarity=0.194 Sum_probs=116.3
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.+...++.+|||+|||+|.++..+++.+ |..+++|+|+++.+++.++++......++.+...|+... ++++++
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 87 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL----PFPDGS 87 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC----CCCCCC
Confidence 344555778999999999999999999886 678999999999999999887444456788988887543 346789
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhh-cccccccccceeecCCCceeeccCHHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL-TGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
||+|++..+++|++ ++..+++++.++|||||.+++.++.......... ......+...+.. .....+....+.
T Consensus 88 ~D~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 161 (241)
T PRK08317 88 FDAVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD----HFADPWLGRRLP 161 (241)
T ss_pred ceEEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh----cCCCCcHHHHHH
Confidence 99999999999995 6889999999999999999998754221100000 0000000001100 001123567899
Q ss_pred HHHHhCCCcEEEeee
Q 008457 226 SLFKENGFDVEELGL 240 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~ 240 (564)
++++++||..+....
T Consensus 162 ~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 162 GLFREAGLTDIEVEP 176 (241)
T ss_pred HHHHHcCCCceeEEE
Confidence 999999999876544
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=134.54 Aligned_cols=104 Identities=17% Similarity=0.291 Sum_probs=88.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..|++..++.+++|+|+|+.|++.|+++.. ++.+.++|+.. ++++++||+|+++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-----~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-----PFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-----CCCCCCEEEEEEC
Confidence 46789999999999999999888778899999999999999988643 46677787753 4578899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
.+++|++++++..+++++.+++ ++.+++.++..
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 9999998888999999999998 56888877643
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-15 Score=124.20 Aligned_cols=97 Identities=27% Similarity=0.455 Sum_probs=81.4
Q ss_pred EEEEcCCccccHHHHHHhC---CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc-
Q 008457 79 VLEVGCGAGNTIFPLIAAY---PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF- 154 (564)
Q Consensus 79 VLDiGcG~G~~~~~l~~~~---~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~- 154 (564)
|||+|||+|..+..+++.+ |..+++|+|+|++|++.++++....+.++++++.|+... +..+++||+|++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l----~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL----PFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH----HHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC----cccCCCeeEEEEcCC
Confidence 7999999999999999885 447999999999999999998865556899999999664 33677999999954
Q ss_pred cccCCChhHHHHHHHHHHhccCCCe
Q 008457 155 VLSAVSPEKMSLVLQNIKKVLKPTG 179 (564)
Q Consensus 155 vl~~~~~~~~~~~l~~~~r~LkpgG 179 (564)
+++|+++++...+++++.++|||||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5999999999999999999999998
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=142.21 Aligned_cols=154 Identities=19% Similarity=0.247 Sum_probs=112.7
Q ss_pred CCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
..++.+|||+|||+|..+..+++. .+..+|+++|+++.+++.|+++....+ .++++..+|+... ++++++||+|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l----~~~~~~fD~V 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL----PVADNSVDVI 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC----CCCCCceeEE
Confidence 367899999999999988777765 455689999999999999998754332 4788888888542 4567899999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
+++.+++|.+ +...++++++++|||||++++.++............... .+ .+.....++.+++.+++++
T Consensus 151 i~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~e~~~~l~~ 220 (272)
T PRK11873 151 ISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAE-----LY---AGCVAGALQEEEYLAMLAE 220 (272)
T ss_pred EEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHH-----HH---hccccCCCCHHHHHHHHHH
Confidence 9999999985 667899999999999999999876533211111000000 00 0111123578999999999
Q ss_pred CCCcEEEeee
Q 008457 231 NGFDVEELGL 240 (564)
Q Consensus 231 aGf~~~~~~~ 240 (564)
+||..+.+..
T Consensus 221 aGf~~v~i~~ 230 (272)
T PRK11873 221 AGFVDITIQP 230 (272)
T ss_pred CCCCceEEEe
Confidence 9999876543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=135.90 Aligned_cols=207 Identities=21% Similarity=0.210 Sum_probs=128.8
Q ss_pred cCCCCCCCCChhHHHHHHHHHhHh--HHH----HHHhhcc-ccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHH
Q 008457 21 IYPTPNTGVSPFWRDKYEREAKKY--WDL----FYKRHQD-RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93 (564)
Q Consensus 21 ~~~~~~~~~~~~~~~~y~~~a~~y--wd~----~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l 93 (564)
+.-....++++...+..+..++.. |.+ ++..+.+ +...+..| ..+...+....+.+|||||||+|.++..+
T Consensus 56 v~i~~~~~l~~~~~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW--~rl~p~l~~L~gk~VLDIGC~nGY~~frM 133 (315)
T PF08003_consen 56 VTIGSASDLSAEQRQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKW--DRLLPHLPDLKGKRVLDIGCNNGYYSFRM 133 (315)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhhCCcccCCcccCCEeecccccccchH--HHHHhhhCCcCCCEEEEecCCCcHHHHHH
Confidence 334445566677767667766655 443 1111111 11112222 23334455578999999999999999999
Q ss_pred HHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHh
Q 008457 94 IAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKK 173 (564)
Q Consensus 94 ~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r 173 (564)
+.++ ...|+|+|+++-..-+.+......+....+....+.-++++ . .+.||+|+|..||.|. .++...|++++.
T Consensus 134 ~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp--~-~~~FDtVF~MGVLYHr--r~Pl~~L~~Lk~ 207 (315)
T PF08003_consen 134 LGRG-AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP--N-LGAFDTVFSMGVLYHR--RSPLDHLKQLKD 207 (315)
T ss_pred hhcC-CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc--c-cCCcCEEEEeeehhcc--CCHHHHHHHHHH
Confidence 9884 34699999999776554332111122223333333334442 2 5789999999999999 589999999999
Q ss_pred ccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 174 VLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 174 ~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
.|+|||.+++.+.........-+.. ...|.. -....+..+...+..+++++||+.+++....
T Consensus 208 ~L~~gGeLvLETlvi~g~~~~~L~P------~~rYa~-m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 208 SLRPGGELVLETLVIDGDENTVLVP------EDRYAK-MRNVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred hhCCCCEEEEEEeeecCCCceEEcc------CCcccC-CCceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 9999999999876654322211111 111111 1111223489999999999999988765543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=137.02 Aligned_cols=131 Identities=19% Similarity=0.306 Sum_probs=94.1
Q ss_pred ChhHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccC--CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeC
Q 008457 30 SPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSG--AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDF 107 (564)
Q Consensus 30 ~~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~ 107 (564)
.....+.|+..|..| |..-.. ..+.....| ...+.+.+.. .++.+|||+|||||.++..+++.. +.+|+|+|+
T Consensus 8 ~~~v~~~f~~iA~~Y-D~~n~~--~s~g~~~~w-r~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~ 82 (226)
T PRK05785 8 WEELQEAYNKIPKAY-DRANRF--ISFNQDVRW-RAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDY 82 (226)
T ss_pred HHHHHHHHHhhhHHH-HHhhhh--ccCCCcHHH-HHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECC
Confidence 345667888888877 321100 011112122 1222222211 347899999999999999998886 579999999
Q ss_pred ChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCC
Q 008457 108 SPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPT 178 (564)
Q Consensus 108 s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkpg 178 (564)
|++|++.|+.+. .++++|+.. .|+++++||+|++..+++|++ ++..++++++|+|||.
T Consensus 83 S~~Ml~~a~~~~-------~~~~~d~~~----lp~~d~sfD~v~~~~~l~~~~--d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 83 AENMLKMNLVAD-------DKVVGSFEA----LPFRDKSFDVVMSSFALHASD--NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CHHHHHHHHhcc-------ceEEechhh----CCCCCCCEEEEEecChhhccC--CHHHHHHHHHHHhcCc
Confidence 999999998752 346677743 267899999999999999984 7889999999999994
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.3e-15 Score=153.08 Aligned_cols=151 Identities=23% Similarity=0.324 Sum_probs=110.0
Q ss_pred HHHHHHhHhHHHHHHh--hccccccccchh------HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeC
Q 008457 36 KYEREAKKYWDLFYKR--HQDRFFKDRHYL------DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDF 107 (564)
Q Consensus 36 ~y~~~a~~ywd~~~~~--~~~~~~~~~~~~------~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~ 107 (564)
.|++.+..+||-+.+. ..++|....+++ ...........++.+|||+|||+|.++..+++.+|+.+|+|+|+
T Consensus 371 ~~~r~~~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDI 450 (677)
T PRK06922 371 MHARANVLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDI 450 (677)
T ss_pred HHHHHHhHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEEC
Confidence 5777777777765442 112222211111 11111122234689999999999999999998889999999999
Q ss_pred ChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCC-----------ChhHHHHHHHHHHhccC
Q 008457 108 SPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAV-----------SPEKMSLVLQNIKKVLK 176 (564)
Q Consensus 108 s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~-----------~~~~~~~~l~~~~r~Lk 176 (564)
|+.|++.|+++....+.++.++++|... ++..+++++||+|+++.++||+ +.+++..++++++++||
T Consensus 451 S~~MLe~Ararl~~~g~~ie~I~gDa~d--Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK 528 (677)
T PRK06922 451 SENVIDTLKKKKQNEGRSWNVIKGDAIN--LSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK 528 (677)
T ss_pred CHHHHHHHHHHhhhcCCCeEEEEcchHh--CccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcC
Confidence 9999999998765444567888888754 2223678899999999999875 23578899999999999
Q ss_pred CCeEEEEEecCC
Q 008457 177 PTGYVLFRDYAI 188 (564)
Q Consensus 177 pgG~lii~~~~~ 188 (564)
|||.+++.+...
T Consensus 529 PGGrLII~D~v~ 540 (677)
T PRK06922 529 PGGRIIIRDGIM 540 (677)
T ss_pred CCcEEEEEeCcc
Confidence 999999987543
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=128.54 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=114.6
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
++...-.++||+|||.|.++..|+.+ .-+++++|+|+.+++.|+++.... .+|++.+.|+.. ..|.++||+|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~-----~~P~~~FDLI 110 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL-PHVEWIQADVPE-----FWPEGRFDLI 110 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT--------SS-EEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCC-----CCCCCCeeEE
Confidence 44466689999999999999999998 468999999999999999998743 689999999854 2478999999
Q ss_pred EEcccccCCCh-hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHH
Q 008457 151 TMVFVLSAVSP-EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFK 229 (564)
Q Consensus 151 ~~~~vl~~~~~-~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 229 (564)
++..+++++++ +++..++..+...|+|||.+++..+.. ....+ +. +.+..+.+..+|.
T Consensus 111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd--~~c~~---wg----------------h~~ga~tv~~~~~ 169 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD--ANCRR---WG----------------HAAGAETVLEMLQ 169 (201)
T ss_dssp EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H--HHHHH---TT-----------------S--HHHHHHHHH
T ss_pred EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC--Ccccc---cC----------------cccchHHHHHHHH
Confidence 99999999974 789999999999999999999976531 11111 11 1246899999998
Q ss_pred hCCCcEEEeeeeeccccccccccccceeEEEEEEEecCC
Q 008457 230 ENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGG 268 (564)
Q Consensus 230 ~aGf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 268 (564)
+. |..++.........+ ..++-+.|++|..
T Consensus 170 ~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 170 EH-LTEVERVECRGGSPN--------EDCLLARFRNPVS 199 (201)
T ss_dssp HH-SEEEEEEEEE-SSTT--------SEEEEEEEE--SS
T ss_pred HH-hhheeEEEEcCCCCC--------CceEeeeecCCcC
Confidence 86 666665555544444 5578888888864
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-13 Score=132.38 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=109.2
Q ss_pred EEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEE
Q 008457 327 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVAT 405 (564)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~t 405 (564)
.+.+.+.+..+++....++|+...-+.| +++|+.+.....+.+|||||||+|.++..++... ..+|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~gVFs~~~LD~G----------trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~v 258 (378)
T PRK15001 189 TVSWKLEGTDWTIHNHANVFSRTGLDIG----------ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFV 258 (378)
T ss_pred eeEEEEcCceEEEEecCCccCCCCcChH----------HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEE
Confidence 4566677889999999999998888888 6667666443345799999999998888887765 4699999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC-----CChHHHHHHHHHH
Q 008457 406 DGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP-----EAILPLFATAKEL 480 (564)
Q Consensus 406 D~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~l~~~~~~l 480 (564)
|.|+.+++.+++|++.|+... ..++.+..-|.. + ...+.+||+|+++.+++.. .....+++.+.++
T Consensus 259 D~S~~Av~~A~~N~~~n~~~~-~~~v~~~~~D~l-----~---~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~ 329 (378)
T PRK15001 259 DESPMAVASSRLNVETNMPEA-LDRCEFMINNAL-----S---GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC 329 (378)
T ss_pred ECCHHHHHHHHHHHHHcCccc-CceEEEEEcccc-----c---cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHh
Confidence 999999999999999987531 123444322221 1 1234589999987654432 2356889999999
Q ss_pred hhccCCCCCCCCCcEEEEEEe
Q 008457 481 TASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 481 l~~~~g~~~~~~~~~~~~~~~ 501 (564)
| +|+| .+++...
T Consensus 330 L-kpGG--------~L~iV~n 341 (378)
T PRK15001 330 L-KING--------ELYIVAN 341 (378)
T ss_pred c-ccCC--------EEEEEEe
Confidence 9 9988 8888753
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=144.56 Aligned_cols=160 Identities=14% Similarity=0.213 Sum_probs=114.2
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
+.+...+..+|||||||+|.++..+++++|+.+++++|. +.+++.++++.... ..+++++.+|+.... ++ .
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~----~~--~ 215 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES----YP--E 215 (306)
T ss_pred HHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC----CC--C
Confidence 334446778999999999999999999999999999997 78999998776543 357899999986532 23 3
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
+|+|++..++|+++++....+++++++.|+|||++++.++...+.....+......+...-. ......+.+.+++.+
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~~ 292 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGM---PFSVLGFKEQARYKE 292 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHccc---ccccccCCCHHHHHH
Confidence 69999999999998777789999999999999999999875432211111000000000000 000111235799999
Q ss_pred HHHhCCCcEEEe
Q 008457 227 LFKENGFDVEEL 238 (564)
Q Consensus 227 ~l~~aGf~~~~~ 238 (564)
+|+++||+.+.+
T Consensus 293 ll~~aGf~~v~~ 304 (306)
T TIGR02716 293 ILESLGYKDVTM 304 (306)
T ss_pred HHHHcCCCeeEe
Confidence 999999987653
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-16 Score=127.39 Aligned_cols=98 Identities=30% Similarity=0.479 Sum_probs=65.1
Q ss_pred EEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEcccccC
Q 008457 80 LEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSA 158 (564)
Q Consensus 80 LDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~ 158 (564)
||||||+|.++..+++.+|..+++|+|+|+.|++.|+++..... .+......+.. +.....+.++||+|++..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVL--DLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SS--S---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecC--ChhhcccccccceehhhhhHhh
Confidence 79999999999999999999999999999999988888875433 23333333322 2211223369999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCeEE
Q 008457 159 VSPEKMSLVLQNIKKVLKPTGYV 181 (564)
Q Consensus 159 ~~~~~~~~~l~~~~r~LkpgG~l 181 (564)
+ +++..++++++++|||||.|
T Consensus 79 l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred h--hhHHHHHHHHHHHcCCCCCC
Confidence 9 68899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=138.58 Aligned_cols=195 Identities=19% Similarity=0.234 Sum_probs=125.9
Q ss_pred HHHHHHhHhHHHHHHhhccccccc--cchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHH
Q 008457 36 KYEREAKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVN 113 (564)
Q Consensus 36 ~y~~~a~~ywd~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~ 113 (564)
+|...+..||+...+......+.. ..++...+...-....+.+|||+|||+|.++..+++. +.+++++|+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~ 81 (224)
T TIGR01983 4 KFSALAHEWWDPNGKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIE 81 (224)
T ss_pred HHHHHHHHhcCCCCcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHH
Confidence 477888999986321110011111 1222222221111245889999999999999988876 567999999999999
Q ss_pred HHHhcccccCC-CeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchh
Q 008457 114 LVMTHKDFTET-RVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLA 192 (564)
Q Consensus 114 ~a~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~ 192 (564)
.++.+...... ++.+...|+..... ...++||+|++..+++|+. ++..+++++.++|+|||.+++.+.......
T Consensus 82 ~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~ 156 (224)
T TIGR01983 82 VAKLHAKKDPLLKIEYRCTSVEDLAE---KGAKSFDVVTCMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTINRTPKS 156 (224)
T ss_pred HHHHHHHHcCCCceEEEeCCHHHhhc---CCCCCccEEEehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEecCCCchH
Confidence 99887654443 57888777653221 1247899999999999994 778899999999999999998876543211
Q ss_pred hh-hhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 193 QE-RLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 193 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
.. .... ......+..........+++..++.++++++||++++..
T Consensus 157 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 157 YLLAIVG--AEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HHHHHHh--hhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 10 0000 000000001111122235689999999999999998754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=135.85 Aligned_cols=168 Identities=20% Similarity=0.288 Sum_probs=118.6
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCC-cEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
+.+.+...++.+|||+|||+|.++..+++.++. .+++++|+++.+++.++++.. ...++.+..+|+... +++.+
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~----~~~~~ 105 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEAL----PFEDN 105 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcC----CCCCC
Confidence 344444467899999999999999999988765 689999999999999988765 345788888888643 34567
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhh-hh----hcccccccccceeecCC-------C
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ-ER----LTGKDQKISENFYVRGD-------G 213 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~-------~ 213 (564)
+||+|++..+++|++ ++..+++++.++|+|||.+++.+........ .. ............+.... .
T Consensus 106 ~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (223)
T TIGR01934 106 SFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPE 183 (223)
T ss_pred cEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHH
Confidence 899999999999985 7889999999999999999997765432110 00 00000000000000000 0
Q ss_pred ceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 214 TRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 214 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
....+++.++|.++|+++||+.+.....
T Consensus 184 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 211 (223)
T TIGR01934 184 SIRAFPSQEELAAMLKEAGFEEVRYRSL 211 (223)
T ss_pred HHHhCCCHHHHHHHHHHcCCccceeeee
Confidence 0122468899999999999998766543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-14 Score=123.55 Aligned_cols=127 Identities=23% Similarity=0.348 Sum_probs=100.7
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
..+|||+|||+|.+...|++..-...++|+|+|+.+++.|+......+ ..|+|.+.|+.+.. +..++||+|+--
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~----~~~~qfdlvlDK 143 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD----FLSGQFDLVLDK 143 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc----ccccceeEEeec
Confidence 349999999999999999998434469999999999999988765443 45999999998753 367889999986
Q ss_pred ccccCCC------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHH
Q 008457 154 FVLSAVS------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 154 ~vl~~~~------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
..+..++ ...+..++..+.++|+|||+++|..= .||.+++.+.
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC-------------------------------N~T~dELv~~ 192 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC-------------------------------NFTKDELVEE 192 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec-------------------------------CccHHHHHHH
Confidence 6665442 22345678889999999999999632 2589999999
Q ss_pred HHhCCCcEEE
Q 008457 228 FKENGFDVEE 237 (564)
Q Consensus 228 l~~aGf~~~~ 237 (564)
++..||+...
T Consensus 193 f~~~~f~~~~ 202 (227)
T KOG1271|consen 193 FENFNFEYLS 202 (227)
T ss_pred HhcCCeEEEE
Confidence 9999987654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=137.91 Aligned_cols=142 Identities=26% Similarity=0.376 Sum_probs=111.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
..+.+|||+|||+|.++..+++.++..+++++|+++.++..++++.. .++.++.+|+... ++++++||+|++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~----~~~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKL----PLEDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhC----CCCCCceeEEEEh
Confidence 34579999999999999999999888899999999999999988765 3678888888643 4467899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.++||+. ++..++.++.++|+|||.+++.++.........-. ... ....+.+.+++.+++.++ |
T Consensus 106 ~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~l~~~-f 169 (240)
T TIGR02072 106 LALQWCD--DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS--FGQ-----------HGLRYLSLDELKALLKNS-F 169 (240)
T ss_pred hhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH--HHH-----------hccCCCCHHHHHHHHHHh-c
Confidence 9999994 68889999999999999999988766543221100 000 112245889999999988 8
Q ss_pred cEEEe
Q 008457 234 DVEEL 238 (564)
Q Consensus 234 ~~~~~ 238 (564)
..+..
T Consensus 170 ~~~~~ 174 (240)
T TIGR02072 170 ELLTL 174 (240)
T ss_pred CCcEE
Confidence 76554
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-13 Score=126.31 Aligned_cols=136 Identities=18% Similarity=0.203 Sum_probs=107.2
Q ss_pred CceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHH
Q 008457 334 DRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIAL 412 (564)
Q Consensus 334 ~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l 412 (564)
+.++++...+++|+...-+.| ++.|+++.....+.+|||||||.|.+++.++... ..+|+++|.|..++
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~G----------S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av 195 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKG----------SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAV 195 (300)
T ss_pred cCceEEEeCCCCCcCCCcChH----------HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHH
Confidence 778899999999999999999 8888887666666699999999999998888876 46999999999999
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCC-----hHHHHHHHHHHhhccCCC
Q 008457 413 DLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEA-----ILPLFATAKELTASSNKS 487 (564)
Q Consensus 413 ~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-----~~~l~~~~~~ll~~~~g~ 487 (564)
+.+++|+..|+... . .+..-+ ..+ +.. ++||+||++..+..... ...++....+.| +++|
T Consensus 196 ~~ar~Nl~~N~~~~---~-~v~~s~-----~~~---~v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L-~~gG- 260 (300)
T COG2813 196 ESARKNLAANGVEN---T-EVWASN-----LYE---PVE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHL-KPGG- 260 (300)
T ss_pred HHHHHhHHHcCCCc---c-EEEEec-----ccc---ccc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhh-ccCC-
Confidence 99999999998752 1 222111 111 112 38999999988876433 337999999999 9988
Q ss_pred CCCCCCcEEEEEEe
Q 008457 488 LREDQQPAFILCHI 501 (564)
Q Consensus 488 ~~~~~~~~~~~~~~ 501 (564)
.+.+...
T Consensus 261 -------eL~iVan 267 (300)
T COG2813 261 -------ELWIVAN 267 (300)
T ss_pred -------EEEEEEc
Confidence 6666655
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-14 Score=126.88 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=102.9
Q ss_pred EEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCC-EEEEEcCChhHHHHH
Q 008457 337 FKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLL 415 (564)
Q Consensus 337 ~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~-~v~~tD~~~~~l~~~ 415 (564)
+++++.+++|+....+ .++.+|++++..+ .+.+|||||||+|.++..++..... +|+++|+++.+++.+
T Consensus 2 ~~~~~~~gvFs~~~~d------~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a 71 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLD------AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELA 71 (170)
T ss_dssp EEEEEETTSTTTTSHH------HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHH
T ss_pred EEEEECCCeeCCCCCC------HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 5666666665433322 3477888888766 6779999999999888888887665 899999999999999
Q ss_pred HHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCC-----ChHHHHHHHHHHhhccCCCCCC
Q 008457 416 AQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE-----AILPLFATAKELTASSNKSLRE 490 (564)
Q Consensus 416 ~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~l~~~~~~ll~~~~g~~~~ 490 (564)
++|+..|+.. . +.+..-|+.+. ....+||+|+++.+++... ....+++...++| +|+|
T Consensus 72 ~~n~~~n~~~---~-v~~~~~d~~~~--------~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~L-k~~G---- 134 (170)
T PF05175_consen 72 KRNAERNGLE---N-VEVVQSDLFEA--------LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYL-KPGG---- 134 (170)
T ss_dssp HHHHHHTTCT---T-EEEEESSTTTT--------CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHE-EEEE----
T ss_pred HHHHHhcCcc---c-ccccccccccc--------ccccceeEEEEccchhcccccchhhHHHHHHHHHHhc-cCCC----
Confidence 9999999874 2 77776666432 2357999999998866544 3788999999999 9988
Q ss_pred CCCcEEEEEEeec
Q 008457 491 DQQPAFILCHIFR 503 (564)
Q Consensus 491 ~~~~~~~~~~~~r 503 (564)
.++++....
T Consensus 135 ----~l~lv~~~~ 143 (170)
T PF05175_consen 135 ----RLFLVINSH 143 (170)
T ss_dssp ----EEEEEEETT
T ss_pred ----EEEEEeecC
Confidence 887766543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=126.72 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=122.6
Q ss_pred hHhHHHHHHhhcccc-ccccc-hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc
Q 008457 42 KKYWDLFYKRHQDRF-FKDRH-YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK 119 (564)
Q Consensus 42 ~~ywd~~~~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~ 119 (564)
.++|+..+......| ....+ .+...|.+ +...++.+||+.|||.|..+..|+++ |.+|+|+|+|+.+++.+.+..
T Consensus 9 ~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~-l~~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~ 85 (226)
T PRK13256 9 NQYWLDRWQNDDVGFCQESPNEFLVKHFSK-LNINDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQN 85 (226)
T ss_pred HHHHHHHHhcCCCCCccCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHc
Confidence 346776665554444 22223 33344433 33346789999999999999999998 889999999999999986521
Q ss_pred -------------cccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 120 -------------DFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 120 -------------~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.....++++.++|+.+.... +-..+.||+|+-..+|++++++...++.+.+.++|+|||.+++..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 86 TINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCCcceecccccceeccCceEEEEccCcCCCcc-ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 11245789999999764311 0123689999999999999999999999999999999999988765
Q ss_pred CCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 187 AIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
..... .+..++..+.+++++++.. +|.+..+.
T Consensus 165 ~~~~~--------------------~~GPPf~v~~~e~~~lf~~-~~~i~~l~ 196 (226)
T PRK13256 165 EHDKK--------------------SQTPPYSVTQAELIKNFSA-KIKFELID 196 (226)
T ss_pred ecCCC--------------------CCCCCCcCCHHHHHHhccC-CceEEEee
Confidence 32210 1122233578999999964 45555443
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-13 Score=138.60 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=111.0
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
+.+...++.+|||||||+|.++..+++.+ +++|+|+|+|+++++.|+++.. ...+++...|... .+++||
T Consensus 161 ~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~-------l~~~fD 230 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRD-------LNGQFD 230 (383)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhh-------cCCCCC
Confidence 34445788999999999999999998875 6899999999999999998874 2357777777642 146899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHH
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLF 228 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 228 (564)
+|++..+++|++..++..+++++.++|||||.+++.++....... .....+.. +....+ ...+.+++...+
T Consensus 231 ~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~----~~~~~i~~--yifp~g---~lps~~~i~~~~ 301 (383)
T PRK11705 231 RIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT----NVDPWINK--YIFPNG---CLPSVRQIAQAS 301 (383)
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC----CCCCCcee--eecCCC---cCCCHHHHHHHH
Confidence 999999999998777889999999999999999998765443110 00111111 111111 233678887776
Q ss_pred HhCCCcEEEeee
Q 008457 229 KENGFDVEELGL 240 (564)
Q Consensus 229 ~~aGf~~~~~~~ 240 (564)
+ .||.+.++..
T Consensus 302 ~-~~~~v~d~~~ 312 (383)
T PRK11705 302 E-GLFVMEDWHN 312 (383)
T ss_pred H-CCcEEEEEec
Confidence 6 5898776543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-13 Score=131.84 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcc-cccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISD-DLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~-~~~~~~~~~~fD~ 149 (564)
.++.+|||+|||+|..+..|++..+ +.+|+++|+|++|++.|+++.... ..++.++++|+... .+..+...+...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 4568999999999999999998865 588999999999999998876432 24577789998652 2211111123445
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+++...++++++++...+|+++++.|+|||.+++..
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 555678999998899999999999999999999744
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=128.59 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=108.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++.. +..++|+|+|+++++.++.+ +++++++|+... + .++++++||+|+++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~-l-~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEG-L-EAFPDKSFDYVILS 82 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhc-c-cccCCCCcCEEEEh
Confidence 467899999999999998887663 56789999999999998753 367788887531 1 13567899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh-h-hcc-cccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE-R-LTG-KDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
.+++|++ ++..+++++.+.+++ +++..++....... . +.. ........-+...+..+..+++.+++.+++++
T Consensus 83 ~~l~~~~--d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~ 157 (194)
T TIGR02081 83 QTLQATR--NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGE 157 (194)
T ss_pred hHhHcCc--CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHH
Confidence 9999994 788899999887654 44443333221111 0 000 00000000011112233447799999999999
Q ss_pred CCCcEEEeeeeecccccc
Q 008457 231 NGFDVEELGLCCKQVENR 248 (564)
Q Consensus 231 aGf~~~~~~~~~~~~~~~ 248 (564)
+||++++.........++
T Consensus 158 ~Gf~v~~~~~~~~~~~~~ 175 (194)
T TIGR02081 158 LNLRILDRAAFDVDGRGG 175 (194)
T ss_pred CCCEEEEEEEeccccccc
Confidence 999999877775544443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=123.32 Aligned_cols=126 Identities=25% Similarity=0.217 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
++.+|||+|||+|..+..++...++.+|+++|+++.|++.|+++....+ .++++.++|+.. + +. .++||+|+++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~--~--~~-~~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE--F--GQ-EEKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh--C--CC-CCCccEEEEc
Confidence 4899999999999999999988888999999999999999998765444 358999999854 2 22 5689999997
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.. .++..++++++++|||||.+++..... ...++..+.+..|+
T Consensus 120 ~~------~~~~~~l~~~~~~LkpGG~lv~~~~~~-------------------------------~~~~l~~~~~~~~~ 162 (187)
T PRK00107 120 AV------ASLSDLVELCLPLLKPGGRFLALKGRD-------------------------------PEEEIAELPKALGG 162 (187)
T ss_pred cc------cCHHHHHHHHHHhcCCCeEEEEEeCCC-------------------------------hHHHHHHHHHhcCc
Confidence 52 246779999999999999999864221 25567777778899
Q ss_pred cEEEeeeee
Q 008457 234 DVEELGLCC 242 (564)
Q Consensus 234 ~~~~~~~~~ 242 (564)
.+.......
T Consensus 163 ~~~~~~~~~ 171 (187)
T PRK00107 163 KVEEVIELT 171 (187)
T ss_pred eEeeeEEEe
Confidence 887654433
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-14 Score=127.05 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCC-eeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETR-VSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
...+.||.|+|.|+.+..++... --+|-.+|+.+..++.|++.......+ .++.+..+.+.. | +.++||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~---P-~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT---P-EEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc---C-CCCcEeEEEeh
Confidence 57899999999999998775543 457999999999999999876643333 456666664322 1 34799999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
+++.|++++++..+|+++...|+|+|.+++.+-..... ...+-..++... -+.+.++++|++||+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~-------------~~~~D~~DsSvT--Rs~~~~~~lF~~AGl 194 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG-------------FDEFDEEDSSVT--RSDEHFRELFKQAGL 194 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS-------------EEEEETTTTEEE--EEHHHHHHHHHHCT-
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC-------------CcccCCccCeee--cCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999976443211 012222233222 368999999999999
Q ss_pred cEEEeeeee
Q 008457 234 DVEELGLCC 242 (564)
Q Consensus 234 ~~~~~~~~~ 242 (564)
+++....+.
T Consensus 195 ~~v~~~~Q~ 203 (218)
T PF05891_consen 195 RLVKEEKQK 203 (218)
T ss_dssp EEEEEEE-T
T ss_pred EEEEecccc
Confidence 999876653
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=120.57 Aligned_cols=152 Identities=22% Similarity=0.276 Sum_probs=115.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||.|.+...|... .+++.+|+|++++.+..+.++ .+.++++|+... + ..|++++||.|+++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~g-L-~~f~d~sFD~VIls 82 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEG-L-ADFPDQSFDYVILS 82 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHh-H-hhCCCCCccEEehH
Confidence 68999999999999999998876 489999999999998888776 356888998653 3 26899999999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhc------ccccccccceeecCCCceeeccCHHHHHHH
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT------GKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
.+|.++ ..+..+|+++.|+ |...+++.++...+...... .....+.-.|| +....+++|..+++++
T Consensus 83 qtLQ~~--~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY---dTPNih~~Ti~DFe~l 154 (193)
T PF07021_consen 83 QTLQAV--RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY---DTPNIHLCTIKDFEDL 154 (193)
T ss_pred hHHHhH--hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc---CCCCcccccHHHHHHH
Confidence 999999 5888999998766 55777887776554322111 11222222233 4444557899999999
Q ss_pred HHhCCCcEEEeeeee
Q 008457 228 FKENGFDVEELGLCC 242 (564)
Q Consensus 228 l~~aGf~~~~~~~~~ 242 (564)
.++.|+++++.....
T Consensus 155 c~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 155 CRELGIRIEERVFLD 169 (193)
T ss_pred HHHCCCEEEEEEEEc
Confidence 999999998765543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=128.99 Aligned_cols=139 Identities=18% Similarity=0.235 Sum_probs=104.4
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecC-CcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDL-ISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~-~~~~~~~~~ 142 (564)
..|.+++.. ++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.|+++....+ .++.++++|+ .. +...+
T Consensus 31 ~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--l~~~~ 107 (202)
T PRK00121 31 LDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEV--LLDMF 107 (202)
T ss_pred CCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHH--HHHHc
Confidence 345555554 7889999999999999999988888899999999999999998764333 5789999998 33 22125
Q ss_pred CCCceeEEEEcccccCCC------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCcee
Q 008457 143 SPSSIDIVTMVFVLSAVS------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRA 216 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (564)
++++||+|++++...+.. ......+++++.++|||||.+++......
T Consensus 108 ~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~--------------------------- 160 (202)
T PRK00121 108 PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG--------------------------- 160 (202)
T ss_pred CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH---------------------------
Confidence 678899999976543321 11246799999999999999998643210
Q ss_pred eccCHHHHHHHHHhCCCcEE
Q 008457 217 FYFSNDFLTSLFKENGFDVE 236 (564)
Q Consensus 217 ~~~~~~~l~~~l~~aGf~~~ 236 (564)
-..++.+.+++.|+...
T Consensus 161 ---~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 161 ---YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred ---HHHHHHHHHHhCccccc
Confidence 14567788888888654
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.4e-13 Score=121.63 Aligned_cols=130 Identities=18% Similarity=0.270 Sum_probs=102.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++.++ +|+++|+|+.+++.++++....+.++++..+|+... ..++||+|+++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~------~~~~fD~Vi~n 89 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG------VRGKFDVILFN 89 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc------cCCcccEEEEC
Confidence 5668999999999999999998853 899999999999999988765555678888887532 24589999999
Q ss_pred ccccCCChh-------------------HHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCc
Q 008457 154 FVLSAVSPE-------------------KMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGT 214 (564)
Q Consensus 154 ~vl~~~~~~-------------------~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (564)
..+++.+.. ....+++++.++|||||.+++......
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------------- 144 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------------- 144 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-------------------------
Confidence 887766421 146789999999999999988653321
Q ss_pred eeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 215 RAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 215 ~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
...++.+.+++.||+...+...
T Consensus 145 -----~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 145 -----GEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred -----ChHHHHHHHHhCCCeEEEEEEe
Confidence 2577789999999988765443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.7e-13 Score=120.46 Aligned_cols=100 Identities=23% Similarity=0.283 Sum_probs=82.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+|||+|..+..++...++.+|+++|.|+.|++.++++....+ .+++++++|+... + ..++||+|++
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~----~-~~~~fD~I~s 115 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF----Q-HEEQFDVITS 115 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc----c-ccCCccEEEe
Confidence 35889999999999999999888778899999999999999887765433 4689999998642 1 3578999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+. ++ ++..+++.++++|+|||.+++.
T Consensus 116 ~~-~~-----~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 116 RA-LA-----SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hh-hh-----CHHHHHHHHHHhcCCCCEEEEE
Confidence 76 33 3456788899999999999975
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=133.09 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCcccc----HHHHHHhCC-----CcEEEEEeCChHHHHHHHhcccc-----------------------
Q 008457 74 AGRKDVLEVGCGAGNT----IFPLIAAYP-----DVFVYACDFSPRAVNLVMTHKDF----------------------- 121 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~----~~~l~~~~~-----~~~v~~iD~s~~~l~~a~~~~~~----------------------- 121 (564)
.++.+|||+|||+|.- +..+++..+ +.+|+|+|+|+.|++.|++..-.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3568999999999974 445555443 57899999999999999985310
Q ss_pred -----cCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 122 -----TETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 122 -----~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
...++.|.+.|+... +++.++||+|+|.++++|++.++...+++++++.|+|||+|++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~----~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAE----SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCC----CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 013688889998653 23578999999999999998778889999999999999999985
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=123.29 Aligned_cols=174 Identities=21% Similarity=0.300 Sum_probs=119.0
Q ss_pred hHhHHHHHHhhccccccc--cchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc
Q 008457 42 KKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK 119 (564)
Q Consensus 42 ~~ywd~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~ 119 (564)
..+|+..|......+-.. ...+...+.. +...++.+||..|||.|..+..|+++ |.+|+|+|+|+.+++.+.+..
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~ 79 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEEN 79 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHh
Confidence 467887776665554322 2233333333 44577889999999999999999998 899999999999999984321
Q ss_pred c-------------ccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 120 D-------------FTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 120 ~-------------~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
. ....+|++.++|+..... -..++||+|+-..+|+.++++...++.+.+.++|+|||.+++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~---~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 80 NLEPTVTSVGGFKRYQAGRITIYCGDFFELPP---EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp TTEEECTTCTTEEEETTSSEEEEES-TTTGGG---SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred ccCCCcccccceeeecCCceEEEEcccccCCh---hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 1 112468899999976432 123579999999999999999999999999999999999555433
Q ss_pred CCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 187 AIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
..... .....++..+.+++.++|. .+|++......
T Consensus 157 ~~~~~-------------------~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~ 191 (218)
T PF05724_consen 157 EYPQG-------------------EMEGPPFSVTEEEVRELFG-PGFEIEELEEE 191 (218)
T ss_dssp ES-CS-------------------CSSSSS----HHHHHHHHT-TTEEEEEEEEE
T ss_pred EcCCc-------------------CCCCcCCCCCHHHHHHHhc-CCcEEEEEecc
Confidence 22110 0112233458999999997 78998877663
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=122.02 Aligned_cols=130 Identities=13% Similarity=0.171 Sum_probs=100.7
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
...+...++.+|||+|||+|.++..+++.+|+.+|+++|+++.+++.|+++..... .++++..+|+.. ++ .++
T Consensus 24 ~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-----~~-~~~ 97 (187)
T PRK08287 24 LSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-----EL-PGK 97 (187)
T ss_pred HHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-----hc-CcC
Confidence 34455567899999999999999999998888899999999999999988764332 468888877631 22 357
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
||+|++....++ +..++..+.+.|+|||.+++..... -+.+++.+
T Consensus 98 ~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~~~~ 142 (187)
T PRK08287 98 ADAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHSALA 142 (187)
T ss_pred CCEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHHHHH
Confidence 999999776543 3568899999999999998853321 13567788
Q ss_pred HHHhCCCcEEEe
Q 008457 227 LFKENGFDVEEL 238 (564)
Q Consensus 227 ~l~~aGf~~~~~ 238 (564)
++++.||..++.
T Consensus 143 ~l~~~g~~~~~~ 154 (187)
T PRK08287 143 HLEKCGVSELDC 154 (187)
T ss_pred HHHHCCCCcceE
Confidence 999999976654
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=123.13 Aligned_cols=145 Identities=18% Similarity=0.268 Sum_probs=99.0
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
.+...++.+|||+|||+|.++..+++..+..+|+|+|+++.|++.+.++... ..++.++.+|+.......+++ ++||+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-~~nv~~i~~D~~~~~~~~~l~-~~~D~ 144 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-RKNIIPILADARKPERYAHVV-EKVDV 144 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-cCCcEEEECCCCCcchhhhcc-ccCCE
Confidence 4566789999999999999999999986566899999999999877655442 257888888886421111223 56999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHH
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFK 229 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 229 (564)
|++.... +.....++++++++|||||.+++..+...- .+. ..... . .++..++++
T Consensus 145 i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~-------d~~-----------~~~~~-~--~~~~~~~l~ 199 (226)
T PRK04266 145 IYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLLAIKARSI-------DVT-----------KDPKE-I--FKEEIRKLE 199 (226)
T ss_pred EEECCCC----hhHHHHHHHHHHHhcCCCcEEEEEEecccc-------cCc-----------CCHHH-H--HHHHHHHHH
Confidence 9864221 123456789999999999999995332100 000 00000 1 134459999
Q ss_pred hCCCcEEEeeee
Q 008457 230 ENGFDVEELGLC 241 (564)
Q Consensus 230 ~aGf~~~~~~~~ 241 (564)
++||++++....
T Consensus 200 ~aGF~~i~~~~l 211 (226)
T PRK04266 200 EGGFEILEVVDL 211 (226)
T ss_pred HcCCeEEEEEcC
Confidence 999999876543
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.4e-11 Score=119.04 Aligned_cols=134 Identities=18% Similarity=0.151 Sum_probs=94.2
Q ss_pred EEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHH
Q 008457 337 FKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLL 415 (564)
Q Consensus 337 ~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~ 415 (564)
+.+...++.++....+.| ++.++.+.......+|||||||+|.++..++...+ .+|+++|+|+.+++.+
T Consensus 167 l~i~~~pgvFs~~~lD~g----------t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A 236 (342)
T PRK09489 167 LTVKTLPGVFSRDGLDVG----------SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESS 236 (342)
T ss_pred EEEEeCCCCCCCCCCCHH----------HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 566667777766555666 44444432223445899999999988888887654 5899999999999999
Q ss_pred HHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeC-----CCChHHHHHHHHHHhhccCCCCCC
Q 008457 416 AQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-----PEAILPLFATAKELTASSNKSLRE 490 (564)
Q Consensus 416 ~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-----~~~~~~l~~~~~~ll~~~~g~~~~ 490 (564)
++|+..|+.. .++...|... . ..++||+|+++.+++. ......+++.+.+.| +|+|
T Consensus 237 ~~nl~~n~l~-----~~~~~~D~~~--------~-~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~L-kpgG---- 297 (342)
T PRK09489 237 RATLAANGLE-----GEVFASNVFS--------D-IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHL-NSGG---- 297 (342)
T ss_pred HHHHHHcCCC-----CEEEEccccc--------c-cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhc-CcCC----
Confidence 9999998863 1222222111 1 2468999998765543 234689999999999 9988
Q ss_pred CCCcEEEEEEeec
Q 008457 491 DQQPAFILCHIFR 503 (564)
Q Consensus 491 ~~~~~~~~~~~~r 503 (564)
.+++.....
T Consensus 298 ----~L~iVan~~ 306 (342)
T PRK09489 298 ----ELRIVANAF 306 (342)
T ss_pred ----EEEEEEeCC
Confidence 777765543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=119.18 Aligned_cols=138 Identities=21% Similarity=0.189 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
+..|.+++.. .++.+|||||||+|.++..++..+. +|+++|+++.+++.+++|+..|+. .+.+...|+.+
T Consensus 8 ~~~l~~~l~~----~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~ 77 (179)
T TIGR00537 8 SLLLEANLRE----LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-----GLDVVMTDLFK 77 (179)
T ss_pred HHHHHHHHHh----cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEccccc
Confidence 4555555532 3567899999999988777777665 899999999999999999988764 24555555533
Q ss_pred CccchhhhhhcCCCccEEEEeceeeCCC---------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 008457 441 RDHIEAIKEENNEGFEVILGTDVSYIPE---------------------AILPLFATAKELTASSNKSLREDQQPAFILC 499 (564)
Q Consensus 441 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~ 499 (564)
. ..++||+|+++.+.+... ....+++.+.++| +|+| .++++
T Consensus 78 ~---------~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-k~gG--------~~~~~ 139 (179)
T TIGR00537 78 G---------VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEIL-KEGG--------RVQLI 139 (179)
T ss_pred c---------cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhh-CCCC--------EEEEE
Confidence 2 234899999876554322 1467899999999 9988 77776
Q ss_pred EeeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 500 HIFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 500 ~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
....+ ....+++.+.+.||.++.+...
T Consensus 140 ~~~~~-~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 140 QSSLN-GEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred EeccC-ChHHHHHHHHhCCCeEEEEEEe
Confidence 54433 2447889999999999998744
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=129.81 Aligned_cols=146 Identities=11% Similarity=0.100 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCCC-----CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 362 HLMAAVLARNPTI-----VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 362 ~~l~~~l~~~~~~-----~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
..+.+.+.....+ .++.+|||||||+|.++..++.....+|+++|+++.+++.+++++..++.. .++.+...
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~---~~v~~~~~ 175 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS---DKVSFQVA 175 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEEc
Confidence 3445545543333 477899999999998888777766779999999999999999998887653 45666665
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc------------
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------ 504 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~------------ 504 (564)
|..+. ++++++||+|++..++.+..+...+++.+.++| +|+| .++++....+
T Consensus 176 D~~~~-------~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvL-kpGG--------~lvi~~~~~~~~~~~~~~l~~~ 239 (340)
T PLN02244 176 DALNQ-------PFEDGQFDLVWSMESGEHMPDKRKFVQELARVA-APGG--------RIIIVTWCHRDLEPGETSLKPD 239 (340)
T ss_pred CcccC-------CCCCCCccEEEECCchhccCCHHHHHHHHHHHc-CCCc--------EEEEEEecccccccccccCCHH
Confidence 55432 345679999999999999999999999999999 9988 6666532110
Q ss_pred -----------------CChhHHHHHHHHcCCeEEEEcC
Q 008457 505 -----------------VDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 505 -----------------~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
.+...+.+.+++.||..+++..
T Consensus 240 ~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d 278 (340)
T PLN02244 240 EQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTED 278 (340)
T ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeee
Confidence 0234666778889999887753
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-12 Score=126.51 Aligned_cols=169 Identities=18% Similarity=0.227 Sum_probs=114.4
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
-|++....... ..+.....+++|||||||+|.++..++..++..|+++|.++.++...+......+. ..++.+...
T Consensus 104 ew~s~~k~~~l-~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~---~~~i~~~~~ 179 (322)
T PRK15068 104 EWRSDWKWDRV-LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN---DQRAHLLPL 179 (322)
T ss_pred eehHHhHHHHH-HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC---CCCeEEEeC
Confidence 46555443322 33333457899999999999888888777777899999999888654433222111 134666555
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--------------
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------- 502 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-------------- 502 (564)
+..+. +. +++||+|++..++|+..+...+++.+.+.| +|+| .+++....
T Consensus 180 d~e~l-------p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~L-kpGG--------~lvl~~~~i~~~~~~~l~p~~~ 242 (322)
T PRK15068 180 GIEQL-------PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQL-VPGG--------ELVLETLVIDGDENTVLVPGDR 242 (322)
T ss_pred CHHHC-------CC-cCCcCEEEECChhhccCCHHHHHHHHHHhc-CCCc--------EEEEEEEEecCCCccccCchhH
Confidence 44322 22 568999999999999999999999999999 9988 66554211
Q ss_pred ----cc----CChhHHHHHHHHcCCeEEEEcCCCCCCCCccccccccccCCCC
Q 008457 503 ----RQ----VDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGH 547 (564)
Q Consensus 503 ----r~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (564)
++ .+...+..++.++||+.+++......... .+....|+....+
T Consensus 243 y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~t~~~-eqr~t~w~~~~sl 294 (322)
T PRK15068 243 YAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSVTTTE-EQRKTEWMTTESL 294 (322)
T ss_pred HhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCCCCcc-ccccccCcccCcH
Confidence 00 13346789999999999999876554433 3334457753333
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.7e-13 Score=125.99 Aligned_cols=135 Identities=27% Similarity=0.297 Sum_probs=102.8
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
..++.+.. .++++|||+|||+|.|++.++..++.+|+++|++|.+++.++.|+..|+... .+.+. +....
T Consensus 153 L~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~---~~~~~---~~~~~-- 222 (300)
T COG2264 153 LEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL---LVQAK---GFLLL-- 222 (300)
T ss_pred HHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch---hhhcc---cccch--
Confidence 44544432 2889999999999988888888899999999999999999999999999853 11111 11111
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEE
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
.....++||+|+|+ ++ .+.+..|..-+.+++ +|+| .++++.....+. ..+.+.+.+.||.+.++
T Consensus 223 ---~~~~~~~~DvIVAN-IL--A~vl~~La~~~~~~l-kpgg--------~lIlSGIl~~q~-~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 223 ---EVPENGPFDVIVAN-IL--AEVLVELAPDIKRLL-KPGG--------RLILSGILEDQA-ESVAEAYEQAGFEVVEV 286 (300)
T ss_pred ---hhcccCcccEEEeh-hh--HHHHHHHHHHHHHHc-CCCc--------eEEEEeehHhHH-HHHHHHHHhCCCeEeEE
Confidence 11233599999864 32 333668899999999 9988 999999887764 47888888999999998
Q ss_pred c
Q 008457 525 W 525 (564)
Q Consensus 525 ~ 525 (564)
.
T Consensus 287 ~ 287 (300)
T COG2264 287 L 287 (300)
T ss_pred E
Confidence 7
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.3e-13 Score=127.76 Aligned_cols=137 Identities=24% Similarity=0.364 Sum_probs=100.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
+.+....++|... ..++++|||+|||||.|++.++..++++|+++|++|.+++.+++|+..|+.. .++.+.
T Consensus 146 ~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~---~~~~v~---- 216 (295)
T PF06325_consen 146 PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE---DRIEVS---- 216 (295)
T ss_dssp HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T---TCEEES----
T ss_pred HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC---eeEEEE----
Confidence 4555556666655 3478899999999998888888889999999999999999999999999986 344442
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG 518 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g 518 (564)
... .....+||+|+|+ ++.+. +..|+..+.++| +|+| .++++....... +.+.+.+.+ |
T Consensus 217 ~~~-------~~~~~~~dlvvAN-I~~~v--L~~l~~~~~~~l-~~~G--------~lIlSGIl~~~~-~~v~~a~~~-g 275 (295)
T PF06325_consen 217 LSE-------DLVEGKFDLVVAN-ILADV--LLELAPDIASLL-KPGG--------YLILSGILEEQE-DEVIEAYKQ-G 275 (295)
T ss_dssp CTS-------CTCCS-EEEEEEE-S-HHH--HHHHHHHCHHHE-EEEE--------EEEEEEEEGGGH-HHHHHHHHT-T
T ss_pred Eec-------ccccccCCEEEEC-CCHHH--HHHHHHHHHHhh-CCCC--------EEEEccccHHHH-HHHHHHHHC-C
Confidence 111 1234799999854 33332 567888889999 9988 888887777544 467777765 9
Q ss_pred CeEEEEc
Q 008457 519 FRLVDKW 525 (564)
Q Consensus 519 ~~~~~~~ 525 (564)
|++.+..
T Consensus 276 ~~~~~~~ 282 (295)
T PF06325_consen 276 FELVEER 282 (295)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 9998765
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-12 Score=124.77 Aligned_cols=170 Identities=16% Similarity=0.207 Sum_probs=114.8
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
-|.+.......+.. ....++++|||+|||+|.+...++..++..|+++|.|+.++..++........ ..++.+...
T Consensus 103 e~~s~~~~~~~l~~-l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~---~~~v~~~~~ 178 (314)
T TIGR00452 103 EWRSDIKWDRVLPH-LSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN---DKRAILEPL 178 (314)
T ss_pred HHHHHHHHHHHHHh-cCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc---CCCeEEEEC
Confidence 46655554444433 34468899999999999887777777777899999999988765432221111 133444444
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------c
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------R 503 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-------------r 503 (564)
+..+ +. ...+||+|++..++|+..+....++.++++| +|+| .+++.... |
T Consensus 179 ~ie~------lp--~~~~FD~V~s~gvL~H~~dp~~~L~el~r~L-kpGG--------~Lvletl~i~g~~~~~l~p~~r 241 (314)
T TIGR00452 179 GIEQ------LH--ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQL-VIKG--------ELVLETLVIDGDLNTVLVPKDR 241 (314)
T ss_pred CHHH------CC--CCCCcCEEEEcchhhccCCHHHHHHHHHHhc-CCCC--------EEEEEEEEecCccccccCchHH
Confidence 3321 11 1248999999999999999999999999999 9988 66654221 0
Q ss_pred ---------cCChhHHHHHHHHcCCeEEEEcCCCCCCCCccccccccccCCCCc
Q 008457 504 ---------QVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHE 548 (564)
Q Consensus 504 ---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (564)
..+...+...++++||+.+++..+......-++ ...|+..+.+.
T Consensus 242 y~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~tt~~eqr-~t~w~~~~sl~ 294 (314)
T TIGR00452 242 YAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLKTTPEEQR-KTDWILGESLE 294 (314)
T ss_pred HHhccccccCCCHHHHHHHHHHCCCeEEEEEeccCCCHHHhh-hhhhhhccchH
Confidence 012345678889999999999877655544344 33588655444
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-12 Score=126.97 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=100.7
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||||||+|.++..++. .+.+|+++|.++++++.++.+...+... .++.+...+- +.+ +..+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~---~~i~~~~~da------e~l-~~~~~~ 198 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVT---STIEYLCTTA------EKL-ADEGRK 198 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcc---cceeEEecCH------HHh-hhccCC
Confidence 4778999999999977666654 4568999999999999999887665432 2344443221 111 234568
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----------------------------cCC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR----------------------------QVD 506 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r----------------------------~~~ 506 (564)
||+|++.+++++..+...+++.+.++| +|+| .++++...+ ..+
T Consensus 199 FD~Vi~~~vLeHv~d~~~~L~~l~r~L-kPGG--------~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~t 269 (322)
T PLN02396 199 FDAVLSLEVIEHVANPAEFCKSLSALT-IPNG--------ATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVT 269 (322)
T ss_pred CCEEEEhhHHHhcCCHHHHHHHHHHHc-CCCc--------EEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCC
Confidence 999999999999999999999999999 9988 777765322 123
Q ss_pred hhHHHHHHHHcCCeEEEEcCC
Q 008457 507 EPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 507 ~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..++.+.+++.||++.++...
T Consensus 270 p~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 270 PEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred HHHHHHHHHHcCCeEEEEeee
Confidence 457888889999999999644
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=110.67 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=86.1
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.+...++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.++++..... .+++++..|+... . +...++
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~ 88 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA-L--EDSLPE 88 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc-C--hhhcCC
Confidence 34444456789999999999999999998878899999999999999988754332 4678887776431 1 112358
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
||+|++..... ....+++++++.|+|||.+++...
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEEec
Confidence 99999976543 345899999999999999998643
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=115.20 Aligned_cols=137 Identities=17% Similarity=0.235 Sum_probs=97.4
Q ss_pred HHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCC--CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHH
Q 008457 36 KYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAG--RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVN 113 (564)
Q Consensus 36 ~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~ 113 (564)
+++..|.+|-.. .+...-+..+.....+++..+. +.-|||||||+|.-+..|... +..++|+|+|+.|++
T Consensus 15 Ynd~eA~kYt~n------sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~ 86 (270)
T KOG1541|consen 15 YNDTEAPKYTQN------SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLE 86 (270)
T ss_pred echhhhhhcccc------ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHH
Confidence 455667776221 1111222334444445554444 788999999999988887766 788999999999999
Q ss_pred HHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCC---------ChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 114 LVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAV---------SPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 114 ~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~---------~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.|.++-- .-.++.+|+- + ..||+.++||.|++..++.|+ |...+..++..++.+|++|+..++.
T Consensus 87 ~a~~~e~----egdlil~DMG-~--GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 87 QAVEREL----EGDLILCDMG-E--GLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred HHHHhhh----hcCeeeeecC-C--CCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 9987421 1356778875 3 348899999999997766654 3445667899999999999999986
Q ss_pred ecC
Q 008457 185 DYA 187 (564)
Q Consensus 185 ~~~ 187 (564)
.+.
T Consensus 160 fYp 162 (270)
T KOG1541|consen 160 FYP 162 (270)
T ss_pred ecc
Confidence 543
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-12 Score=123.82 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=88.1
Q ss_pred CCCCeEEEEcCCccccHHHHH--HhCCCcEEEEEeCChHHHHHHHhcccc-c--CCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLI--AAYPDVFVYACDFSPRAVNLVMTHKDF-T--ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~--~~~~~~~v~~iD~s~~~l~~a~~~~~~-~--~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.++.+|+|||||.|.++..+. ...|+.+++|+|.++++++.|++.... . ..+++|.++|+.+.. -..+.||
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~----~~l~~FD 197 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT----ESLKEYD 197 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc----cccCCcC
Confidence 488999999999886654433 357889999999999999999998742 2 367999999986521 1246899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++. +++++..++...+++++.+.|+|||.+++..
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999 8898876789999999999999999999864
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=119.61 Aligned_cols=109 Identities=17% Similarity=0.281 Sum_probs=87.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++++|||+|||-|.++.-+|..+ ++|+++|.++++|+.++.....++.. ++|... ..+.+.. ..++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~----------i~y~~~-~~edl~~-~~~~ 124 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN----------IDYRQA-TVEDLAS-AGGQ 124 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhcccc----------ccchhh-hHHHHHh-cCCC
Confidence 589999999999997776666665 78999999999999999999888763 223222 1222211 2369
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 505 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~ 505 (564)
||+|++.+++.|..+.+.+++.+.+++ ||+| .++++...|..
T Consensus 125 FDvV~cmEVlEHv~dp~~~~~~c~~lv-kP~G--------~lf~STinrt~ 166 (243)
T COG2227 125 FDVVTCMEVLEHVPDPESFLRACAKLV-KPGG--------ILFLSTINRTL 166 (243)
T ss_pred ccEEEEhhHHHccCCHHHHHHHHHHHc-CCCc--------EEEEeccccCH
Confidence 999999999999999999999999999 9998 88888877543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.9e-12 Score=120.60 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=102.7
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
+..+.....+.++.+|||||||+|..+..++.....+|+++|+++.+++.++++... ..++.+...|..+.
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~--- 111 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK--- 111 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC---
Confidence 444555455668889999999999777766665566999999999999999987543 13466665554322
Q ss_pred hhhhhhcCCCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc------------------
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------------ 504 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~------------------ 504 (564)
++++++||+|++.+++++.. +...+++.+.++| +|+| .++++.....
T Consensus 112 ----~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~L-kPGG--------~lvi~d~~~~~~~~~~~~~~~~~~~~~~ 178 (263)
T PTZ00098 112 ----DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWL-KPNG--------ILLITDYCADKIENWDEEFKAYIKKRKY 178 (263)
T ss_pred ----CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHc-CCCc--------EEEEEEeccccccCcHHHHHHHHHhcCC
Confidence 34567999999999887754 7899999999999 9988 7766543211
Q ss_pred --CChhHHHHHHHHcCCeEEEEcC
Q 008457 505 --VDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 505 --~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
.+...+.+.++++||.+++...
T Consensus 179 ~~~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 179 TLIPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred CCCCHHHHHHHHHHCCCCeeeEEe
Confidence 1224566778889999887753
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-12 Score=115.53 Aligned_cols=111 Identities=22% Similarity=0.354 Sum_probs=88.4
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCC-eeEEEecCCcccccCCCCCCce
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETR-VSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~~~f 147 (564)
+.+...+..+|||+|||+|..+..+++.+|..+|+++|+++.+++.++++....... ++++..|+.. ++++++|
T Consensus 25 ~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-----~~~~~~f 99 (170)
T PF05175_consen 25 DNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-----ALPDGKF 99 (170)
T ss_dssp HHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-----TCCTTCE
T ss_pred HHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-----cccccce
Confidence 333334788999999999999999999988889999999999999999887655533 8888888754 3457899
Q ss_pred eEEEEcccccCCCh---hHHHHHHHHHHhccCCCeEEEEE
Q 008457 148 DIVTMVFVLSAVSP---EKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 148 D~V~~~~vl~~~~~---~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
|+|+++--++.-.. +-...++++..+.|||||.+++.
T Consensus 100 D~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 100 DLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp EEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 99999876655432 34688999999999999999774
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=119.15 Aligned_cols=114 Identities=14% Similarity=0.223 Sum_probs=89.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
.|.....+++.+...+.+|.+|||||||.|+++..++.+.+.+|+++.+|++-.+.+++.+...++. +++.+...||
T Consensus 45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~---~~v~v~~~D~ 121 (273)
T PF02353_consen 45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE---DRVEVRLQDY 121 (273)
T ss_dssp HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS---STEEEEES-G
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEEeec
Confidence 4455677888888888899999999999999999999886779999999999999999999988875 6788887777
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
.+. +.+||.|++.+++.+. ..++.+++.+.++| +|+|
T Consensus 122 ~~~----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~L-kpgG 160 (273)
T PF02353_consen 122 RDL----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLL-KPGG 160 (273)
T ss_dssp GG-------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHS-ETTE
T ss_pred ccc----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhc-CCCc
Confidence 532 2399999999999986 68899999999999 9988
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=119.41 Aligned_cols=133 Identities=15% Similarity=0.087 Sum_probs=100.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++.. +.+|+++|+++++++.+++++...+.. .++.+...+..+ +.+..+++|
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~---~~v~~~~~d~~~------l~~~~~~~f 113 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVS---DNMQFIHCAAQD------IAQHLETPV 113 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc---cceEEEEcCHHH------HhhhcCCCC
Confidence 5679999999999877777765 568999999999999999999877653 345554433321 222345789
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------------------
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------------------------- 503 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-------------------------------- 503 (564)
|+|++..++++..+...+++.+.++| +|+| .++++....
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 184 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVL-RPGG--------ALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDY 184 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHc-CCCe--------EEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCC
Confidence 99999999999889999999999999 9988 666543221
Q ss_pred cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+...+.+.++++||+++++..+
T Consensus 185 ~~~~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 185 PLDPEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred CCCHHHHHHHHHHCCCeEeeeeeE
Confidence 112346778888899999877644
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=112.53 Aligned_cols=130 Identities=21% Similarity=0.304 Sum_probs=98.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC-C--eeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-R--VSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~-~--i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++...... + +.++..|+.. +++..+||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-----PFRGDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-----cccccCceEE
Confidence 57789999999999999999988 78999999999999999877643332 2 7788888754 2345589999
Q ss_pred EEcccccCC-------------------ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecC
Q 008457 151 TMVFVLSAV-------------------SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRG 211 (564)
Q Consensus 151 ~~~~vl~~~-------------------~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (564)
+++..+.+. +...+..+++++.++|||||.+++.....
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------------- 151 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------------- 151 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-----------------------
Confidence 987654331 12345678999999999999988753211
Q ss_pred CCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 212 DGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 212 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
...+.+.++++++||++.....
T Consensus 152 -------~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 152 -------TGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred -------CCHHHHHHHHHHCCCeeeeeee
Confidence 1457788999999998775443
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-12 Score=125.84 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=88.9
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC----CCeeEEEecCCcccccCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE----TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~----~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+.++...+.+|||+|||+|.++..+++.+|..+|+++|.|+.+++.|+++..... .++++...|... .++
T Consensus 221 L~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-----~~~ 295 (378)
T PRK15001 221 MQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-----GVE 295 (378)
T ss_pred HHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-----cCC
Confidence 34454444579999999999999999999999999999999999999998764332 357888777643 234
Q ss_pred CCceeEEEEcccccC---CChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 144 PSSIDIVTMVFVLSA---VSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~---~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.++||+|+|+-.+|. ++.+...++++++++.|+|||.+++.
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 568999999866653 34445678999999999999999986
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-11 Score=114.32 Aligned_cols=164 Identities=20% Similarity=0.273 Sum_probs=110.9
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
.+..+++++... ...++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+..++. .+.+...|+.
T Consensus 21 ds~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-----~~~~~~~d~~ 94 (223)
T PRK14967 21 DTQLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-----DVDVRRGDWA 94 (223)
T ss_pred cHHHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-----eeEEEECchh
Confidence 456777777653 2446789999999999877777666556999999999999999999988764 2455555543
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCC----------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPE----------------------AILPLFATAKELTASSNKSLREDQQPAFI 497 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~----------------------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~ 497 (564)
+. +...+||+|+++.. |... .+..+++.+.++| +++| .++
T Consensus 95 ~~--------~~~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~L-k~gG--------~l~ 156 (223)
T PRK14967 95 RA--------VEFRPFDVVVSNPP-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALL-APGG--------SLL 156 (223)
T ss_pred hh--------ccCCCeeEEEECCC-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhc-CCCc--------EEE
Confidence 21 23468999997643 4322 1456788899999 9988 777
Q ss_pred EEEeeccCChhHHHHHHHHcCCeEEEEcCCCCCCCCccccccccccCCCCc
Q 008457 498 LCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHE 548 (564)
Q Consensus 498 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (564)
+.+.... ....+++.+++.||.++......-+-.+.......|+.....-
T Consensus 157 ~~~~~~~-~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (223)
T PRK14967 157 LVQSELS-GVERTLTRLSEAGLDAEVVASQWIPFGPVLRARAAWLERRGLL 206 (223)
T ss_pred EEEeccc-CHHHHHHHHHHCCCCeEEEEeeccCccHHHHHHHHHHHHcCCC
Confidence 6644442 2346788888899988877654444333232233444443333
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=111.21 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=95.0
Q ss_pred CCCeEEEeCCcccHHHHHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++. ....+|+++|.++++++.+++|++.++.. .+++...+..+. .. .++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~----~i~~~~~d~~~~-------~~-~~~ 112 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK----NVTVVHGRAEEF-------GQ-EEK 112 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC----CEEEEeccHhhC-------CC-CCC
Confidence 478999999999977776665 34579999999999999999999998863 366665554321 11 458
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
||+|++.. ...++.+++.+.++| +|+| .+++..... ....+.+...+.|+.+..+...
T Consensus 113 fDlV~~~~----~~~~~~~l~~~~~~L-kpGG--------~lv~~~~~~--~~~~l~~~~~~~~~~~~~~~~~ 170 (187)
T PRK00107 113 FDVVTSRA----VASLSDLVELCLPLL-KPGG--------RFLALKGRD--PEEEIAELPKALGGKVEEVIEL 170 (187)
T ss_pred ccEEEEcc----ccCHHHHHHHHHHhc-CCCe--------EEEEEeCCC--hHHHHHHHHHhcCceEeeeEEE
Confidence 99999764 256889999999999 9988 777664333 3346777778889999888643
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=118.49 Aligned_cols=131 Identities=23% Similarity=0.365 Sum_probs=99.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..+.+|||+|||+|.++..++...|+.+++|+|+++.+++.|+.+....+ .++.+.++|+.. +++.++||+|++
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~fD~Vi~ 160 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-----PLPGGKFDLIVS 160 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-----cCcCCceeEEEE
Confidence 34569999999999999999998888899999999999999988765433 358899988854 235689999999
Q ss_pred ccccc------CCCh------------------hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccccccccee
Q 008457 153 VFVLS------AVSP------------------EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFY 208 (564)
Q Consensus 153 ~~vl~------~~~~------------------~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (564)
+--+. ++.. .....+++++.++|+|||.+++...
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------- 218 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------- 218 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------
Confidence 54322 1211 1134788999999999999988421
Q ss_pred ecCCCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 209 VRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
+...+++.++|+++||+.+.+..
T Consensus 219 ---------~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 219 ---------YDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred ---------ccHHHHHHHHHHhCCCCceEEEe
Confidence 01467788999999998776543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.9e-12 Score=121.65 Aligned_cols=101 Identities=21% Similarity=0.358 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCC---cEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPD---VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~---~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.+..+|||+|||+|.++..+++..+. .+++|+|+|+.|++.|+++. .++.+.++|+... |+++++||+|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~l----p~~~~sfD~I 155 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRL----PFADQSLDAI 155 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccC----CCcCCceeEE
Confidence 45678999999999999999887542 47999999999999998764 3578888887542 5678899999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL 191 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~ 191 (564)
++...- ..++++.|+|||||.+++..+.....
T Consensus 156 ~~~~~~---------~~~~e~~rvLkpgG~li~~~p~~~~l 187 (272)
T PRK11088 156 IRIYAP---------CKAEELARVVKPGGIVITVTPGPRHL 187 (272)
T ss_pred EEecCC---------CCHHHHHhhccCCCEEEEEeCCCcch
Confidence 986541 13678999999999999987765443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=117.00 Aligned_cols=133 Identities=21% Similarity=0.319 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++....+....+ .+ +..+.+||+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~---~~-------~~~~~~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELNGVELNV---YL-------PQGDLKADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCceE---EE-------ccCCCCcCEEEEc
Confidence 578999999999999988877664 336999999999999999886543221111 11 0112279999997
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
... +....+++++.++|||||.++++.... ...+++.+.+++.||
T Consensus 187 i~~-----~~~~~l~~~~~~~LkpgG~lilsgi~~------------------------------~~~~~v~~~l~~~Gf 231 (250)
T PRK00517 187 ILA-----NPLLELAPDLARLLKPGGRLILSGILE------------------------------EQADEVLEAYEEAGF 231 (250)
T ss_pred CcH-----HHHHHHHHHHHHhcCCCcEEEEEECcH------------------------------hhHHHHHHHHHHCCC
Confidence 532 345678999999999999999975432 135678899999999
Q ss_pred cEEEeeeeeccccccccccccceeEEEEEEEec
Q 008457 234 DVEELGLCCKQVENRARELVMNRRWVQAVFCSS 266 (564)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (564)
.+...... ..|+...++|+
T Consensus 232 ~~~~~~~~--------------~~W~~~~~~~~ 250 (250)
T PRK00517 232 TLDEVLER--------------GEWVALVGKKK 250 (250)
T ss_pred EEEEEEEe--------------CCEEEEEEEeC
Confidence 98764332 34777776653
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-12 Score=117.39 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
....+|||||||+|.++..+++.+|+.+++|+|+++.+++.|+++....+ .++.++++|+.... ...++++++|.|++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-DKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH-HhhCCCCceeEEEE
Confidence 45679999999999999999999999999999999999999987754332 47999999985421 11235678999999
Q ss_pred cccccCCChh------HHHHHHHHHHhccCCCeEEEEEec
Q 008457 153 VFVLSAVSPE------KMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 153 ~~vl~~~~~~------~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+....|.... ....+++++.++|||||.+++.+.
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 8755443210 124689999999999999998753
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-12 Score=105.65 Aligned_cols=106 Identities=15% Similarity=0.229 Sum_probs=81.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||||||+|.++..++.. ...+|+++|+|+++++.+++|+...... .++.+..-|+ .. . .....+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~i~~~~~d~-~~-~-----~~~~~~ 70 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS---DRITFVQGDA-EF-D-----PDFLEP 70 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT---TTEEEEESCC-HG-G-----TTTSSC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEECcc-cc-C-----cccCCC
Confidence 5789999999999888777773 6778999999999999999999665553 6788887776 11 1 112357
Q ss_pred ccEEEEec-eee---CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 455 FEVILGTD-VSY---IPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 455 fD~Ii~~d-~~y---~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
||+|++.. +.. .......+++.+.++| +|+| ++++..
T Consensus 71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG--------~lvi~~ 111 (112)
T PF12847_consen 71 FDLVICSGFTLHFLLPLDERRRVLERIRRLL-KPGG--------RLVINT 111 (112)
T ss_dssp EEEEEECSGSGGGCCHHHHHHHHHHHHHHHE-EEEE--------EEEEEE
T ss_pred CCEEEECCCccccccchhHHHHHHHHHHHhc-CCCc--------EEEEEE
Confidence 99999888 222 1245678899999999 9988 777764
|
... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.8e-12 Score=124.37 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=89.9
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCce
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+.+......+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.|+++....+...+++..|+.. . ..++|
T Consensus 189 l~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~-----~-~~~~f 262 (342)
T PRK09489 189 LSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS-----D-IKGRF 262 (342)
T ss_pred HHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc-----c-cCCCc
Confidence 34444445678999999999999999999888899999999999999998776554455666677642 1 35789
Q ss_pred eEEEEcccccCC---ChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 148 DIVTMVFVLSAV---SPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 148 D~V~~~~vl~~~---~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
|+|+++-.+|+. .......+++++.+.|||||.+++..
T Consensus 263 DlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 999999888863 23567899999999999999998853
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-11 Score=114.71 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=99.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
++...-.+.++....+.+|.+|||||||.|+++..++...+.+|+++++|++..+.+++.+..-++. .++++...||
T Consensus 55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~---~~v~v~l~d~ 131 (283)
T COG2230 55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE---DNVEVRLQDY 131 (283)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC---cccEEEeccc
Confidence 4555566778888888999999999999999999999988889999999999999999999988875 5788988888
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
.+. .++||-|++.+++.+. +.++.+++.+.++| +|+|
T Consensus 132 rd~----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L-~~~G 170 (283)
T COG2230 132 RDF----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALL-KPGG 170 (283)
T ss_pred ccc----------ccccceeeehhhHHHhCcccHHHHHHHHHhhc-CCCc
Confidence 754 2469999999998774 45999999999999 9988
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=110.94 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=92.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++... ..+|+++|.++.+++.+++|+..++. .++.+...|..+. ...++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~----~~i~~i~~d~~~~--------~~~~~ 109 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL----NNVEIVNGRAEDF--------QHEEQ 109 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC----CCeEEEecchhhc--------cccCC
Confidence 58899999999997777766544 46899999999999999999988765 3466666655431 12468
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh-hHHHHHHHHcCCeEEEEcCC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~g~~~~~~~~~ 527 (564)
||+|++.- ...++.+++.+.++| +|+| .+++......... ..+.+.|.-.||++.++-+.
T Consensus 110 fD~I~s~~----~~~~~~~~~~~~~~L-kpgG--------~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 110 FDVITSRA----LASLNVLLELTLNLL-KVGG--------YFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred ccEEEehh----hhCHHHHHHHHHHhc-CCCC--------EEEEEcCCCcHHHHHHHHHhhhhcCceEeecccc
Confidence 99988643 345788899999999 9988 7776643333222 23445555589999988644
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-11 Score=115.70 Aligned_cols=136 Identities=24% Similarity=0.335 Sum_probs=99.8
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
..+.+..+.+++... ..++.+|||+|||+|.++..++..++.+|+++|+|+.+++.+++|+..|+.. ..+.+.
T Consensus 102 ~h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~---~~~~~~-- 174 (250)
T PRK00517 102 THPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE---LNVYLP-- 174 (250)
T ss_pred CCHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---ceEEEc--
Confidence 355666666666654 2478899999999997777666666668999999999999999999998763 222211
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHH
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ 516 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 516 (564)
. .+.+||+|+++ .. ...+..+++.+.++| +|+| .++++..... ....+.+.+.+
T Consensus 175 ---~----------~~~~fD~Vvan-i~--~~~~~~l~~~~~~~L-kpgG--------~lilsgi~~~-~~~~v~~~l~~ 228 (250)
T PRK00517 175 ---Q----------GDLKADVIVAN-IL--ANPLLELAPDLARLL-KPGG--------RLILSGILEE-QADEVLEAYEE 228 (250)
T ss_pred ---c----------CCCCcCEEEEc-Cc--HHHHHHHHHHHHHhc-CCCc--------EEEEEECcHh-hHHHHHHHHHH
Confidence 0 01279999864 21 234677889999999 9988 8888755443 23467888889
Q ss_pred cCCeEEEEc
Q 008457 517 CGFRLVDKW 525 (564)
Q Consensus 517 ~g~~~~~~~ 525 (564)
.||.+.++.
T Consensus 229 ~Gf~~~~~~ 237 (250)
T PRK00517 229 AGFTLDEVL 237 (250)
T ss_pred CCCEEEEEE
Confidence 999998876
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=124.98 Aligned_cols=357 Identities=16% Similarity=0.173 Sum_probs=178.3
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEE---eCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYAC---DFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~i---D~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.-..+||+|||+|.++..|.++ ++.+..+ |..+..++.|-++. +....+-+... .+||++++||+|.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleRG------vpa~~~~~~s~--rLPfp~~~fDmvH 186 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALERG------VPAMIGVLGSQ--RLPFPSNAFDMVH 186 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhcC------cchhhhhhccc--cccCCccchhhhh
Confidence 3456899999999999999998 5444333 33334555555442 12222222222 3489999999999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
|..++..+...+ ..+|-++.|+|+|||+++++.+.......... .-.-..+.++.+..
T Consensus 187 csrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~---------------------~~~~~~~~~l~~~l 244 (506)
T PF03141_consen 187 CSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDL---------------------EEEWNAMEDLAKSL 244 (506)
T ss_pred cccccccchhcc-cceeehhhhhhccCceEEecCCcccccchHHH---------------------HHHHHHHHHHHHHH
Confidence 999887664333 46899999999999999997554431000000 00134555666665
Q ss_pred CCcEEEeeeeeccccccccccccceeEEEEEEEecCCCCCCccch--hhhhhhccccc-chhhhhhhhhcCcCCCccccc
Q 008457 232 GFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEA--SVRVDIFNQAI-IEPDVAANTLKEPMNDSEVDM 308 (564)
Q Consensus 232 Gf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~e~~~~~~~l~~~i~~~~~~~ 308 (564)
-++.+..... .+.|+||... ++.... .....+|.... .+..++..+-.++-...+..
T Consensus 245 CW~~va~~~~------------------~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~- 304 (506)
T PF03141_consen 245 CWKKVAEKGD------------------TAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVS- 304 (506)
T ss_pred HHHHheeeCC------------------EEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCccc-
Confidence 5554422111 3567787755 333111 12334444221 01122222221111111100
Q ss_pred chHHHHhhhCCCC--CCCceEEEEEeCCceEEEE-EecccccccCCCccceechhHHHHHHHHhcCCCCC--CCCeEEEe
Q 008457 309 SEGVAFEMFGLSS--FEDNEMIEVNLRDRSFKIE-VLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIV--AGKKVLEL 383 (564)
Q Consensus 309 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~--~~~~vLel 383 (564)
++ . ..+..+ +++....+-.+.... +. .....+ ..-...|...+--..-+. .+.+. .-..|+|.
T Consensus 305 ~~-~---~~~~~~~WP~RL~~~P~rl~~~~--~~g~~~e~F-----~~Dt~~Wk~~V~~Y~~l~-~~~i~~~~iRNVMDM 372 (506)
T PF03141_consen 305 SE-I---AGGWLPKWPERLNAVPPRLSSGS--IPGISPEEF-----KEDTKHWKKRVSHYKKLL-GLAIKWGRIRNVMDM 372 (506)
T ss_pred cc-c---cccCCCCChhhhccCchhhhcCC--cCCCCHHHH-----HHHHHHHHHHHHHHHHhh-cccccccceeeeeee
Confidence 00 0 000000 000000000000000 00 000000 001245554432222122 22222 33489999
Q ss_pred CCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEe
Q 008457 384 GCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGT 461 (564)
Q Consensus 384 G~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~ 461 (564)
.+|.|+++..+..... -.|+-++. +..+..+-. -++ --.-.||.+. + +..+..||+|-+.
T Consensus 373 nAg~GGFAAAL~~~~VWVMNVVP~~~-~ntL~vIyd----RGL-------IG~yhDWCE~--f----sTYPRTYDLlHA~ 434 (506)
T PF03141_consen 373 NAGYGGFAAALIDDPVWVMNVVPVSG-PNTLPVIYD----RGL-------IGVYHDWCEA--F----STYPRTYDLLHAD 434 (506)
T ss_pred cccccHHHHHhccCCceEEEecccCC-CCcchhhhh----ccc-------chhccchhhc--c----CCCCcchhheehh
Confidence 9999988887765442 24554432 333332211 122 1234678754 2 2346799998876
Q ss_pred ceee---CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-hhHHHHHHHHcCCeEEEEc
Q 008457 462 DVSY---IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-EPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 462 d~~y---~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~g~~~~~~~ 525 (564)
.++- +.-.+..++-.+.|+| +|+| .+++ +.... .......+.+..+++....
T Consensus 435 ~lfs~~~~rC~~~~illEmDRIL-RP~G--------~~ii---RD~~~vl~~v~~i~~~lrW~~~~~d 490 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRIL-RPGG--------WVII---RDTVDVLEKVKKIAKSLRWEVRIHD 490 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhc-CCCc--------eEEE---eccHHHHHHHHHHHHhCcceEEEEe
Confidence 5532 3457889999999999 9998 6655 22222 2344455556677776544
|
; GO: 0008168 methyltransferase activity |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=115.93 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=85.6
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~ 141 (564)
..+.+.+...++.+|||+|||+|..+..+++..+ +.+|+++|+++++++.|+++....+ .++++..+|.... +
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~-~--- 137 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG-L--- 137 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC-C---
Confidence 4445556667889999999999999999888743 5699999999999999988765433 3588889988542 1
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
...++||+|++..++++++ +++.+.|+|||.+++..
T Consensus 138 ~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 EKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 1346899999999888774 35788999999998853
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-11 Score=117.47 Aligned_cols=127 Identities=19% Similarity=0.243 Sum_probs=96.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++..++...|+.+|+++|+|+.+++.|+++....+ .++.++++|+.. ++++++||+|+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-----~~~~~~fD~Iv 194 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-----ALPGRKYDLIV 194 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-----ccCCCCccEEE
Confidence 45679999999999999999999888999999999999999998875443 468999999753 23456899999
Q ss_pred Ecc------ccc-------CCC----------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccccccccee
Q 008457 152 MVF------VLS-------AVS----------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFY 208 (564)
Q Consensus 152 ~~~------vl~-------~~~----------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (564)
++- .+. |-| .+....+++++.+.|+|||.+++....
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--------------------- 253 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--------------------- 253 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---------------------
Confidence 961 111 111 123467899999999999999875321
Q ss_pred ecCCCceeeccCHHHHHHHHHhCCCcEEE
Q 008457 209 VRGDGTRAFYFSNDFLTSLFKENGFDVEE 237 (564)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~ 237 (564)
+.+.+.+++.+.||....
T Consensus 254 -----------~~~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 254 -----------SMEALEEAYPDVPFTWLE 271 (284)
T ss_pred -----------CHHHHHHHHHhCCCceee
Confidence 235677888888887643
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-12 Score=113.33 Aligned_cols=191 Identities=16% Similarity=0.276 Sum_probs=124.5
Q ss_pred CCCCCCCChhHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEE
Q 008457 23 PTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFV 102 (564)
Q Consensus 23 ~~~~~~~~~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v 102 (564)
+.+.+.-+.+....|++-|..|-+-...+.. |.....+.+.+.+ ...-+-.++||+|||||-.+..|... --++
T Consensus 77 e~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~---Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~--a~~l 150 (287)
T COG4976 77 ETPEKPPSAYVETLFDQYAERFDHILVDKLG---YSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDM--ADRL 150 (287)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhc---CccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHH--Hhhc
Confidence 4445555666666777766665433322211 2223333333332 33344789999999999999888777 4579
Q ss_pred EEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEE
Q 008457 103 YACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 103 ~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~li 182 (564)
+|+|+|..|+++|.++.... ...+.+... +......+.||+|++..||.++. .+..++.-+...|+|||.+.
T Consensus 151 tGvDiS~nMl~kA~eKg~YD----~L~~Aea~~--Fl~~~~~er~DLi~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfa 222 (287)
T COG4976 151 TGVDISENMLAKAHEKGLYD----TLYVAEAVL--FLEDLTQERFDLIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFA 222 (287)
T ss_pred cCCchhHHHHHHHHhccchH----HHHHHHHHH--HhhhccCCcccchhhhhHHHhhc--chhhHHHHHHHhcCCCceEE
Confidence 99999999999999874311 111222211 11113567899999999999995 78889999999999999999
Q ss_pred EEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 183 FRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 183 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
++.-...+.. .| .. .....|-.+...++.+++..||+++.+..+.
T Consensus 223 FSvE~l~~~~-------------~f-~l-~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 223 FSVETLPDDG-------------GF-VL-GPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred EEecccCCCC-------------Ce-ec-chhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 9754443321 01 11 1112223477889999999999998876543
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-11 Score=114.71 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=78.2
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
+.++.+|||+|||+|.++..++... ..+|+++|+|++|++.++++....... ...++.+...|..+. +++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~l-------p~~ 142 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDL-------PFD 142 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccC-------CCC
Confidence 3467899999999998777666542 358999999999999998765421110 013455554443321 345
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+++||+|+++.++.+..+...+++.+.++| +|+|
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvL-kpGG 176 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVL-KPGS 176 (261)
T ss_pred CCCEeEEEEecccccCCCHHHHHHHHHHHc-CcCc
Confidence 679999999999999999999999999999 9988
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-11 Score=112.90 Aligned_cols=107 Identities=20% Similarity=0.151 Sum_probs=81.8
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++....+.++.+...|+.. .+++++||+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-----~~~~~~fD~Vi~ 107 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-----AVEFRPFDVVVS 107 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-----hccCCCeeEEEE
Confidence 3567899999999999999888763 3489999999999999988765444567788888753 235678999999
Q ss_pred cccccCCC-------------------hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 153 VFVLSAVS-------------------PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 153 ~~vl~~~~-------------------~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+--...-+ ......+++++.++|||||.+++..
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 75322211 1125678899999999999999853
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-12 Score=121.68 Aligned_cols=109 Identities=28% Similarity=0.435 Sum_probs=91.7
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
......+..+|||||+|.|.++..+++++|+.+++.+|. |..++.+++ ..+++++.+|+. . ++|. +|
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~----~~P~--~D 160 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-D----PLPV--AD 160 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-T----CCSS--ES
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-h----hhcc--cc
Confidence 334445677999999999999999999999999999999 889988887 578999999997 3 3454 99
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCC--eEEEEEecCCCc
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPT--GYVLFRDYAIGD 190 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~Lkpg--G~lii~~~~~~~ 190 (564)
+|++.++||++++++...+|+++++.|+|| |+|+|.+...++
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 999999999999999999999999999999 999998876443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=122.83 Aligned_cols=119 Identities=15% Similarity=0.240 Sum_probs=93.7
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
+.+.+....+..+||||||+|.++..+++.+|+..++|+|+++.++..|.++....+ .++.++++|+... ...++++
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l--l~~~~~~ 191 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL--LELLPSN 191 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh--hhhCCCC
Confidence 344455566789999999999999999999999999999999999999988765433 5799999998532 2246789
Q ss_pred ceeEEEEcccccCCChhH----HHHHHHHHHhccCCCeEEEEEecC
Q 008457 146 SIDIVTMVFVLSAVSPEK----MSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~----~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++|.|++++...|..... ...++.++.|+|+|||.+.+.+-.
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 999999976655432111 257999999999999999986543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=122.51 Aligned_cols=163 Identities=23% Similarity=0.366 Sum_probs=106.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-------c----CCCeeEEEecCCcccccCCCC
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-------T----ETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-------~----~~~i~~~~~d~~~~~~~~~~~ 143 (564)
++.+|||+|||-|..+.-..... -.+++|+|++...++.|+++... . .-...|+.+|.....+...++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 78999999999999888777663 45899999999999999988721 1 124567788877665554455
Q ss_pred CC--ceeEEEEcccccCC--ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcc---------ccccccc-----
Q 008457 144 PS--SIDIVTMVFVLSAV--SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG---------KDQKISE----- 205 (564)
Q Consensus 144 ~~--~fD~V~~~~vl~~~--~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~---------~~~~~~~----- 205 (564)
+. .||+|.|.++||+. +.+....+|+++.+.|+|||+++.+.+....... ++.. ....+..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~-~l~~~~~~~~~~~~gN~~y~I~f~~ 219 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVK-RLREKKSNSEKKKFGNSVYSIEFDS 219 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHC-CHHC-EEECCCSCSETSSEEEEESC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHH-HHHhhcccccccccCCccEEEEecc
Confidence 44 99999999999976 5677888999999999999999998765432210 0000 0010100
Q ss_pred ---------c--eeecC--CCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 206 ---------N--FYVRG--DGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 206 ---------~--~~~~~--~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
. |+... +....|....+.+.+++++.|++.+...
T Consensus 220 ~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~ 266 (331)
T PF03291_consen 220 DDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKK 266 (331)
T ss_dssp CSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEE
T ss_pred cCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeC
Confidence 0 11111 1233456678999999999999988643
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-11 Score=111.30 Aligned_cols=131 Identities=17% Similarity=0.179 Sum_probs=98.5
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCc
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+...++.+|||+|||+|.++..+++. .++.+|+++|+++.+++.|+++....+ .++.++.+|+... + +...+.
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-l--~~~~~~ 111 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-L--FTINEK 111 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-H--hhcCCC
Confidence 345578899999999999999988876 456799999999999999988765443 5788888887532 1 112368
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
||+|++... . .++..+++.+.+.|+|||++++..... -+..++..
T Consensus 112 ~D~V~~~~~---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~------------------------------~~~~~~~~ 156 (198)
T PRK00377 112 FDRIFIGGG---S--EKLKEIISASWEIIKKGGRIVIDAILL------------------------------ETVNNALS 156 (198)
T ss_pred CCEEEECCC---c--ccHHHHHHHHHHHcCCCcEEEEEeecH------------------------------HHHHHHHH
Confidence 999998542 1 356789999999999999998743211 13567778
Q ss_pred HHHhCCCcEEEe
Q 008457 227 LFKENGFDVEEL 238 (564)
Q Consensus 227 ~l~~aGf~~~~~ 238 (564)
.+++.||.....
T Consensus 157 ~l~~~g~~~~~~ 168 (198)
T PRK00377 157 ALENIGFNLEIT 168 (198)
T ss_pred HHHHcCCCeEEE
Confidence 889999955433
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=7e-11 Score=116.30 Aligned_cols=140 Identities=23% Similarity=0.264 Sum_probs=99.1
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
.+.+....+++.... .++.+|||+|||+|.++..++..++.+|+++|+++.+++.+++|+..|+.. ..+.+...+
T Consensus 143 h~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~---~~~~~~~~~ 217 (288)
T TIGR00406 143 HPTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS---DRLQVKLIY 217 (288)
T ss_pred CHHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---cceEEEecc
Confidence 355555555555432 367899999999998887777667779999999999999999999998864 233333221
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHc
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC 517 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 517 (564)
- .....++||+|+++- + ...+..++..+.++| +|+| .++++...+.. ...+.+.+.+.
T Consensus 218 ~---------~~~~~~~fDlVvan~-~--~~~l~~ll~~~~~~L-kpgG--------~li~sgi~~~~-~~~v~~~~~~~ 275 (288)
T TIGR00406 218 L---------EQPIEGKADVIVANI-L--AEVIKELYPQFSRLV-KPGG--------WLILSGILETQ-AQSVCDAYEQG 275 (288)
T ss_pred c---------ccccCCCceEEEEec-C--HHHHHHHHHHHHHHc-CCCc--------EEEEEeCcHhH-HHHHHHHHHcc
Confidence 0 012346899999752 2 234567889999999 9988 88887665433 34567777665
Q ss_pred CCeEEEEc
Q 008457 518 GFRLVDKW 525 (564)
Q Consensus 518 g~~~~~~~ 525 (564)
|++.++.
T Consensus 276 -f~~~~~~ 282 (288)
T TIGR00406 276 -FTVVEIR 282 (288)
T ss_pred -CceeeEe
Confidence 8888765
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=108.69 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=88.3
Q ss_pred CCCeEEEeCCcccHHHHHHHh-cC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAA-GS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~-~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
++.+|||||||+|.++..++. .+ ..+|+++|+++++++.+++++..++. .++.+..-|+.+.+ .. ++ +
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~----~ni~~~~~d~~~l~---~~--~~-~ 72 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL----DNIEFIQGDIEDLP---QE--LE-E 72 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS----TTEEEEESBTTCGC---GC--SS-T
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc----cccceEEeehhccc---cc--cC-C
Confidence 578999999999988877773 33 57999999999999999999998876 36888887776521 00 12 6
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
.||+|++..++++..+...+++.+.++| +++| .+++....
T Consensus 73 ~~D~I~~~~~l~~~~~~~~~l~~~~~~l-k~~G--------~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDPEKVLKNIIRLL-KPGG--------ILIISDPN 112 (152)
T ss_dssp TEEEEEEESTGGGTSHHHHHHHHHHHHE-EEEE--------EEEEEEEE
T ss_pred CeeEEEEcCchhhccCHHHHHHHHHHHc-CCCc--------EEEEEECC
Confidence 9999999999999999999999999999 9988 77777666
|
... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=110.80 Aligned_cols=130 Identities=19% Similarity=0.184 Sum_probs=90.9
Q ss_pred EEEeCChHHHHHHHhccccc----CCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCC
Q 008457 103 YACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPT 178 (564)
Q Consensus 103 ~~iD~s~~~l~~a~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkpg 178 (564)
+|+|+|+.|++.|+++.... ..+++++++|+.+. |+++++||+|++..++++++ ++..++++++|+||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL----PFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC----CCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcC
Confidence 48999999999998764321 24689999998643 56888999999999999994 7889999999999999
Q ss_pred eEEEEEecCCCchhhhhhcc-cc----cccccceeecCCCce-------eeccCHHHHHHHHHhCCCcEEEee
Q 008457 179 GYVLFRDYAIGDLAQERLTG-KD----QKISENFYVRGDGTR-------AFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 179 G~lii~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
|.+++.++..++........ +. ......+. ...... ..+.+.+++.++++++||..+...
T Consensus 75 G~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 75 SRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVY-DLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred eEEEEEECCCCChHHHHHHHHHHccchHhhhhHHh-CChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 99999988765432221110 00 00000000 000011 125699999999999999877543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-11 Score=109.37 Aligned_cols=99 Identities=26% Similarity=0.281 Sum_probs=77.4
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++.+|||+|||+|..+..++.. +.+|+++|+|+.+++.+++++..++.. .+.+...|+.+. ++ ++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~----~v~~~~~d~~~~-------~~-~~ 94 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD----NLHTAVVDLNNL-------TF-DG 94 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC----cceEEecChhhC-------Cc-CC
Confidence 346789999999999877777765 458999999999999999998887652 355555554322 11 35
Q ss_pred CccEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
+||+|+++.++++. ...+.+++.+.++| +|+|
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~L-kpgG 128 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCT-KPGG 128 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHc-CCCc
Confidence 79999999987653 46889999999999 9988
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=111.63 Aligned_cols=102 Identities=12% Similarity=0.057 Sum_probs=79.4
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
.+.++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..++. .++.+...|..+. ++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~-------~~ 110 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL----HNVELVHGNAMEL-------PF 110 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC----CceEEEEechhcC-------CC
Confidence 3446789999999999777766654 2 35999999999999999999876654 3455544443221 23
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+.++||+|+++.++.+......+++.+.++| +|+|
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~L-k~gG 145 (231)
T TIGR02752 111 DDNSFDYVTIGFGLRNVPDYMQVLREMYRVV-KPGG 145 (231)
T ss_pred CCCCccEEEEecccccCCCHHHHHHHHHHHc-CcCe
Confidence 4568999999888888888999999999999 9988
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-11 Score=114.67 Aligned_cols=137 Identities=23% Similarity=0.334 Sum_probs=99.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCC--eeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETR--VSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~--i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++...++.+ ..+|+|+|++|.+++.|+.+...++.. ++....+.. .....++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~-----~~~~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL-----EVPENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch-----hhcccCcccEEE
Confidence 589999999999999999888873 346999999999999999987654433 111111111 111346999999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
+|- |- +-+..+...+++.|||||+++++-.... ..+.+.+.+.++
T Consensus 235 ANI-LA----~vl~~La~~~~~~lkpgg~lIlSGIl~~------------------------------q~~~V~~a~~~~ 279 (300)
T COG2264 235 ANI-LA----EVLVELAPDIKRLLKPGGRLILSGILED------------------------------QAESVAEAYEQA 279 (300)
T ss_pred ehh-hH----HHHHHHHHHHHHHcCCCceEEEEeehHh------------------------------HHHHHHHHHHhC
Confidence 976 33 2356899999999999999999743210 256677888899
Q ss_pred CCcEEEeeeeeccccccccccccceeEEEEEEEe
Q 008457 232 GFDVEELGLCCKQVENRARELVMNRRWVQAVFCS 265 (564)
Q Consensus 232 Gf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (564)
||.++..... ..|+...++|
T Consensus 280 gf~v~~~~~~--------------~eW~~i~~kr 299 (300)
T COG2264 280 GFEVVEVLER--------------EEWVAIVGKR 299 (300)
T ss_pred CCeEeEEEec--------------CCEEEEEEEc
Confidence 9999876443 4588777765
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-11 Score=113.42 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=86.1
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSR 140 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 140 (564)
+...+.+.+...++.+|||||||+|..+..+++.. ++.+|+++|+++.+++.|+++....+ .++.++++|.....
T Consensus 64 ~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~--- 140 (212)
T PRK13942 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY--- 140 (212)
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC---
Confidence 33445556666889999999999999999888873 45799999999999999998875433 47899999975321
Q ss_pred CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.+.++||+|++.....+++ +.+.+.|||||.+++.
T Consensus 141 -~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 -EENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred -CcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 2457899999988766553 3567789999999885
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=110.56 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=78.5
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
+...++.+|||+|||+|.++.+++... +...|+++|+++.+.+........ ..++.++..|+.... ....+.++||+
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-r~NI~~I~~Da~~p~-~y~~~~~~vDv 205 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-RPNIVPIIEDARYPQ-KYRMLVPMVDV 205 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCCEEEECCccChh-hhhcccCCCCE
Confidence 334788999999999999999999884 456899999998755333332211 157888888886432 01223457999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
|++.... +++...++.++.++|||||.|++.
T Consensus 206 V~~Dva~----pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVAQ----PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCCC----cchHHHHHHHHHHhccCCCEEEEE
Confidence 9997641 245667788999999999999995
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9e-11 Score=108.48 Aligned_cols=145 Identities=20% Similarity=0.161 Sum_probs=103.1
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~ 435 (564)
..+..+.+|.+++.. .++++|||+|||+|.++..++.. ..+|+++|+++++++.+++|+..++... ..+.+..
T Consensus 7 ~p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~--~~~~~~~ 79 (188)
T PRK14968 7 EPAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRN--NGVEVIR 79 (188)
T ss_pred CcchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCC--cceEEEe
Confidence 345667777777754 36789999999999877777666 6799999999999999999998877631 1155555
Q ss_pred eecCCCccchhhhhhcCCCccEEEEeceeeCC---------------------CChHHHHHHHHHHhhccCCCCCCCCCc
Q 008457 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---------------------EAILPLFATAKELTASSNKSLREDQQP 494 (564)
Q Consensus 436 l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---------------------~~~~~l~~~~~~ll~~~~g~~~~~~~~ 494 (564)
.|+.+. +...+||+|+++...+.. ..+..+++.+.++| +|+|
T Consensus 80 ~d~~~~--------~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L-k~gG-------- 142 (188)
T PRK14968 80 SDLFEP--------FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYL-KPGG-------- 142 (188)
T ss_pred cccccc--------ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhc-CCCe--------
Confidence 554332 233489999976554431 12466899999999 9987
Q ss_pred EEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 495 AFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 495 ~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+++..... .....+.+.+.+.||++..+.
T Consensus 143 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 143 RILLLQSSL-TGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred EEEEEEccc-CCHHHHHHHHHHCCCeeeeee
Confidence 555544322 123467888889999988765
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.3e-11 Score=115.74 Aligned_cols=132 Identities=20% Similarity=0.283 Sum_probs=99.8
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc-ccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-FTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
....++.+|||+|||+|..+..++...|..+++|+|+|+.+++.|+++.. ....++.++.+|+.. +++.++||+
T Consensus 104 ~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-----~~~~~~fD~ 178 (275)
T PRK09328 104 LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-----PLPGGRFDL 178 (275)
T ss_pred ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-----cCCCCceeE
Confidence 33467789999999999999999999888999999999999999998865 334578999998843 234578999
Q ss_pred EEEccccc------CCC------------------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccccccc
Q 008457 150 VTMVFVLS------AVS------------------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISE 205 (564)
Q Consensus 150 V~~~~vl~------~~~------------------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~ 205 (564)
|+++--.. .+. .+....+++++.++|+|||.+++.. ..
T Consensus 179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~----------------- 240 (275)
T PRK09328 179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GY----------------- 240 (275)
T ss_pred EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-Cc-----------------
Confidence 99953211 010 1234678889999999999999842 10
Q ss_pred ceeecCCCceeeccCHHHHHHHHHhCCCcEEEe
Q 008457 206 NFYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
...+.+.+++++.||..+..
T Consensus 241 -------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 -------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred -------------hHHHHHHHHHHhCCCceeEE
Confidence 13467888999999985544
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.7e-11 Score=110.96 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc----cCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~~fD 148 (564)
.++.+|||+|||+|.++..+++.. +..+|+|+|+++ |. ...++.++++|+..... ..++..++||
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~---------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD---------PIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc---------CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 678899999999999999998884 457999999988 21 12358899999876421 0134578899
Q ss_pred EEEEcccccCCChh--H-------HHHHHHHHHhccCCCeEEEEEecCC
Q 008457 149 IVTMVFVLSAVSPE--K-------MSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 149 ~V~~~~vl~~~~~~--~-------~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
+|++..+.++.... + ...+|+++.++|||||.+++..+..
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 99998876664311 1 2468999999999999999976543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=99.74 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=72.3
Q ss_pred EEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEE
Q 008457 381 LELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILG 460 (564)
Q Consensus 381 LelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~ 460 (564)
||+|||+|..+..++.....+|+++|+++.+++.++++....+ +.+...+..+. ++++++||+|++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~-------~~~~~~d~~~l-------~~~~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG-------VSFRQGDAEDL-------PFPDNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST-------EEEEESBTTSS-------SS-TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC-------chheeehHHhC-------cccccccccccc
Confidence 8999999977777777767899999999999999999866533 33555554432 556789999999
Q ss_pred eceeeCCCChHHHHHHHHHHhhccCC
Q 008457 461 TDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 461 ~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..++++.++...+++.+.++| ||+|
T Consensus 67 ~~~~~~~~~~~~~l~e~~rvL-k~gG 91 (95)
T PF08241_consen 67 NSVLHHLEDPEAALREIYRVL-KPGG 91 (95)
T ss_dssp ESHGGGSSHHHHHHHHHHHHE-EEEE
T ss_pred ccceeeccCHHHHHHHHHHHc-CcCe
Confidence 999999999999999999999 9988
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=116.94 Aligned_cols=131 Identities=21% Similarity=0.276 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|..+..++...|+.+|+++|+|+.+++.|+++....+.++.++++|+..... + ..++||+|+|+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l--~-~~~~FDLIVSN 326 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM--P-SEGKWDIIVSN 326 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc--c-cCCCccEEEEC
Confidence 35579999999999999999988888999999999999999999876555689999999854322 1 24579999995
Q ss_pred ccccC-----C------------------ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeec
Q 008457 154 FVLSA-----V------------------SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVR 210 (564)
Q Consensus 154 ~vl~~-----~------------------~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (564)
--... . ..+-...+++++.+.|+|||.+++.. ..
T Consensus 327 PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G~---------------------- 383 (423)
T PRK14966 327 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-GF---------------------- 383 (423)
T ss_pred CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-Cc----------------------
Confidence 52110 0 01124577788889999999987642 11
Q ss_pred CCCceeeccCHHHHHHHHHhCCCcEEEe
Q 008457 211 GDGTRAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 211 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
-..+.+.+++++.||..+++
T Consensus 384 --------~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 384 --------DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred --------cHHHHHHHHHHHCCCcEEEE
Confidence 13677889999999987655
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=107.47 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=93.4
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++.+|||+|||+|.++..++... ..+|+++|.++.+++.+++|+..++. .++.+...+.. . .+
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~----~~i~~~~~d~~-----~---~~- 94 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC----GNIDIIPGEAP-----I---EL- 94 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCeEEEecCch-----h---hc-
Confidence 34477899999999998888777655 35999999999999999999998775 23554433221 0 11
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+||+|++... ...+..+++.+.++| +|+| .+++.... ......+...+.+.||+..++...
T Consensus 95 ~~~~D~v~~~~~---~~~~~~~l~~~~~~L-k~gG--------~lv~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 95 PGKADAIFIGGS---GGNLTAIIDWSLAHL-HPGG--------RLVLTFIL-LENLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred CcCCCEEEECCC---ccCHHHHHHHHHHhc-CCCe--------EEEEEEec-HhhHHHHHHHHHHCCCCcceEEEE
Confidence 358999997543 235788999999999 9988 77665432 223346788888999977666533
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=111.30 Aligned_cols=130 Identities=13% Similarity=0.164 Sum_probs=101.3
Q ss_pred CeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 378 KKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
++|||+|||+|.++..++... ..+|+++|+|+++++.+++++...++. .++.+...|.... + .+++||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~---~~i~~~~~d~~~~-------~-~~~~fD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ---GRIRIFYRDSAKD-------P-FPDTYD 69 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC---cceEEEecccccC-------C-CCCCCC
Confidence 479999999998777777665 468999999999999999999887664 4667766665432 1 135899
Q ss_pred EEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------cCChhHHHHHHHHcCCeEE
Q 008457 457 VILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------QVDEPSMLSAATQCGFRLV 522 (564)
Q Consensus 457 ~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--------------~~~~~~~~~~~~~~g~~~~ 522 (564)
+|++..++++..+...+++.+.++| +|+| .+++..... ..+...+.+.+.+.||++.
T Consensus 70 ~I~~~~~l~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 70 LVFGFEVIHHIKDKMDLFSNISRHL-KDGG--------HLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred EeehHHHHHhCCCHHHHHHHHHHHc-CCCC--------EEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 9999999999899999999999999 9988 666654321 1123456778889999999
Q ss_pred EEcCC
Q 008457 523 DKWPS 527 (564)
Q Consensus 523 ~~~~~ 527 (564)
+....
T Consensus 141 ~~~~~ 145 (224)
T smart00828 141 EGVDA 145 (224)
T ss_pred EeEEC
Confidence 88654
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=111.88 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=74.7
Q ss_pred eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEccccc
Q 008457 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLS 157 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~ 157 (564)
.++|+|||+|..++.+++.+ -+|+|+|+|+.|++.|+++......+....-.+-....+ --.++++|+|+|..++|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L--~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL--LGGEESVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccc--cCCCcceeeehhhhhHH
Confidence 89999999998888888884 469999999999999998765322222221111111111 11378999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCe-EEEEEe
Q 008457 158 AVSPEKMSLVLQNIKKVLKPTG-YVLFRD 185 (564)
Q Consensus 158 ~~~~~~~~~~l~~~~r~LkpgG-~lii~~ 185 (564)
|+ +..+++++++|+||+.| .+.+-.
T Consensus 112 WF---dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 112 WF---DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hh---chHHHHHHHHHHcCCCCCEEEEEE
Confidence 99 78899999999999877 555533
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=114.53 Aligned_cols=132 Identities=18% Similarity=0.210 Sum_probs=98.7
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc-CC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~-~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
+.++.+|||+|||+|..+..++.. +. .+|+++|+++.+++.+++|...++. .++.+..-++.+. +++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~----~~v~~~~~d~~~l-------~~~ 143 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY----TNVEFRLGEIEAL-------PVA 143 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC----CCEEEEEcchhhC-------CCC
Confidence 447889999999999666555543 33 4899999999999999999887665 3455554444321 234
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee---------------------ccCChhHH
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF---------------------RQVDEPSM 510 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~---------------------r~~~~~~~ 510 (564)
+++||+|+++.++.+..+...+++.+.++| +|+| .++++... ......++
T Consensus 144 ~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~L-kpGG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 214 (272)
T PRK11873 144 DNSVDVIISNCVINLSPDKERVFKEAFRVL-KPGG--------RFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEY 214 (272)
T ss_pred CCceeEEEEcCcccCCCCHHHHHHHHHHHc-CCCc--------EEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHH
Confidence 568999998888888888999999999999 9988 66664321 11233467
Q ss_pred HHHHHHcCCeEEEEc
Q 008457 511 LSAATQCGFRLVDKW 525 (564)
Q Consensus 511 ~~~~~~~g~~~~~~~ 525 (564)
.+.+.+.||...++.
T Consensus 215 ~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 215 LAMLAEAGFVDITIQ 229 (272)
T ss_pred HHHHHHCCCCceEEE
Confidence 888888999998774
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-10 Score=100.15 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=106.4
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
...+.+.++.+++|||||+|..+..++..+|.++|+++|-++++++..+++....+ .++..+.+++..... +. .+
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~--~~--~~ 102 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP--DL--PS 102 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc--CC--CC
Confidence 44566789999999999999999999988999999999999999999888765544 788999998854311 11 27
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
+|.|+.... . ....+|+.+...|||||.+++...... +.....+
T Consensus 103 ~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~naitlE------------------------------~~~~a~~ 146 (187)
T COG2242 103 PDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANAITLE------------------------------TLAKALE 146 (187)
T ss_pred CCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEeecHH------------------------------HHHHHHH
Confidence 999999887 3 356789999999999999998643321 4556678
Q ss_pred HHHhCCC-cEEEeeeee
Q 008457 227 LFKENGF-DVEELGLCC 242 (564)
Q Consensus 227 ~l~~aGf-~~~~~~~~~ 242 (564)
.+++.|+ +++++....
T Consensus 147 ~~~~~g~~ei~~v~is~ 163 (187)
T COG2242 147 ALEQLGGREIVQVQISR 163 (187)
T ss_pred HHHHcCCceEEEEEeec
Confidence 8999999 666655543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-11 Score=115.58 Aligned_cols=135 Identities=24% Similarity=0.338 Sum_probs=97.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++...++.+ ..+|+|+|++|.+++.|+.+...++...++..... . ....++||+|++|
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~--~----~~~~~~~dlvvAN 232 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS--E----DLVEGKFDLVVAN 232 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT--S----CTCCS-EEEEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe--c----ccccccCCEEEEC
Confidence 578899999999999998888873 34799999999999999998765543333332211 1 2245899999996
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
-... -+..++..+.+.|+|||+++++-... -..+.+.+.+++ ||
T Consensus 233 I~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl~------------------------------~~~~~v~~a~~~-g~ 276 (295)
T PF06325_consen 233 ILAD-----VLLELAPDIASLLKPGGYLILSGILE------------------------------EQEDEVIEAYKQ-GF 276 (295)
T ss_dssp S-HH-----HHHHHHHHCHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHT-TE
T ss_pred CCHH-----HHHHHHHHHHHhhCCCCEEEEccccH------------------------------HHHHHHHHHHHC-CC
Confidence 6433 45678888999999999999974321 136777888876 99
Q ss_pred cEEEeeeeeccccccccccccceeEEEEEEEe
Q 008457 234 DVEELGLCCKQVENRARELVMNRRWVQAVFCS 265 (564)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (564)
++++.... ..|+...++|
T Consensus 277 ~~~~~~~~--------------~~W~~l~~~K 294 (295)
T PF06325_consen 277 ELVEEREE--------------GEWVALVFKK 294 (295)
T ss_dssp EEEEEEEE--------------TTEEEEEEEE
T ss_pred EEEEEEEE--------------CCEEEEEEEe
Confidence 98765433 3488777776
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=113.01 Aligned_cols=112 Identities=18% Similarity=0.281 Sum_probs=80.9
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.+.|++|||+|||+|.++.-++. .++.|+++|.++++++.+++....+-.. ...+.. .+..... +.+. ..+
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~dP~~--~~~~~y-~l~~~~~-~~E~----~~~ 157 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKMDPVL--EGAIAY-RLEYEDT-DVEG----LTG 157 (282)
T ss_pred ccCCceEEEeccCccccchhhHh-hCCeeEeecccHHHHHHHHHhhhcCchh--ccccce-eeehhhc-chhh----ccc
Confidence 34678999999999966655554 5578999999999999999884433221 122111 1222111 1111 124
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
.||.|++++++.|..+++.+++.+.++| +|+| .++++...|
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~l-kP~G--------~lfittinr 198 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSALL-KPNG--------RLFITTINR 198 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHHh-CCCC--------ceEeeehhh
Confidence 6999999999999999999999999999 9988 777777765
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.5e-11 Score=106.25 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=113.5
Q ss_pred chhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-CCCe-eEEEecCCcccc
Q 008457 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRV-STFVCDLISDDL 138 (564)
Q Consensus 61 ~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-~~~i-~~~~~d~~~~~~ 138 (564)
..+...+.+++. ..+.+|||||||||.++.++++..|..+..-.|+++..+.-.+...... ..|+ .-+..|+.....
T Consensus 12 ~pIl~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 12 DPILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW 90 (204)
T ss_pred hHHHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC
Confidence 344455555654 2333699999999999999999999999999999998864444332211 1232 234567765533
Q ss_pred cC----CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCc-----hhhhhhcccccccccceee
Q 008457 139 SR----QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD-----LAQERLTGKDQKISENFYV 209 (564)
Q Consensus 139 ~~----~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 209 (564)
+. ++..++||+|+|..++|-+|.+....+++.+.++|++||.|++.-+...+ .....|...++.....
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~--- 167 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPE--- 167 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCC---
Confidence 21 22467899999999999999899999999999999999999996443221 1111221111111111
Q ss_pred cCCCceeeccCHHHHHHHHHhCCCcEEEe
Q 008457 210 RGDGTRAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
.-.-+.+++.++.+++|++.++.
T Consensus 168 ------~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 168 ------WGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred ------cCccCHHHHHHHHHHCCCccCcc
Confidence 11347889999999999987643
|
The function of this family is unknown. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=113.50 Aligned_cols=103 Identities=22% Similarity=0.401 Sum_probs=82.5
Q ss_pred CeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEc-
Q 008457 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMV- 153 (564)
Q Consensus 77 ~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~- 153 (564)
.+|||+|||+|.++..++...++.+|+++|+|+.+++.|+++....+ .++.++++|+.. +++..+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-----~~~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-----PLAGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-----cCcCCCccEEEECC
Confidence 79999999999999999998888899999999999999998765433 348999999854 2344589999996
Q ss_pred ------------ccccCCC----------hhHHHHHHHHHHhccCCCeEEEEE
Q 008457 154 ------------FVLSAVS----------PEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 154 ------------~vl~~~~----------~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.++.|-| .+....++.++.+.|+|||.+++.
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1233332 125678899999999999999875
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=114.55 Aligned_cols=104 Identities=19% Similarity=0.266 Sum_probs=82.2
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
..+|||+|||+|.++..++..+|+.+|+++|+|+.+++.|+++....+ .+++++++|+.. .++.++||+|+++
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-----~l~~~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-----ALPGRRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-----hCCCCCccEEEEC
Confidence 378999999999999999999888999999999999999998875443 468999999753 2245689999996
Q ss_pred c------c-------ccCCC----------hhHHHHHHHHHHhccCCCeEEEEE
Q 008457 154 F------V-------LSAVS----------PEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 154 ~------v-------l~~~~----------~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
- . ++|-| .+....+++++.+.|+|||.+++.
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2 1 11211 123467899999999999999874
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=109.10 Aligned_cols=161 Identities=12% Similarity=0.140 Sum_probs=109.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
....+|||+|||+|.++..++...++.+|+++|+++.|++.++++. .++.++++|+.... ...+||+|+++
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~~-----~~~kFDlIIsN 133 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEFE-----SNEKFDVVISN 133 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhhc-----ccCCCcEEEEc
Confidence 4567999999999999988888765679999999999999998864 26788899986431 34689999999
Q ss_pred ccccCCChhH------------------HHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCce
Q 008457 154 FVLSAVSPEK------------------MSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTR 215 (564)
Q Consensus 154 ~vl~~~~~~~------------------~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (564)
-.++|.+..+ +..++.....+|+|+|.+++.- .... .|
T Consensus 134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y-ss~~----------------~y------- 189 (279)
T PHA03411 134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY-SGRP----------------YY------- 189 (279)
T ss_pred CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE-eccc----------------cc-------
Confidence 8888865332 2456677788899999776641 1100 00
Q ss_pred eeccCHHHHHHHHHhCCCcEEE-eeeeeccccccccccccceeEEEEEEEecC
Q 008457 216 AFYFSNDFLTSLFKENGFDVEE-LGLCCKQVENRARELVMNRRWVQAVFCSSG 267 (564)
Q Consensus 216 ~~~~~~~~l~~~l~~aGf~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 267 (564)
.--++++++++++++.||...- ..+....+...+.++...-+.+...|..+.
T Consensus 190 ~~sl~~~~y~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PHA03411 190 DGTMKSNKYLKWSKQTGLVTYAGCGIDTSIYRDEWHSTNVLTEVVEVRYYEKE 242 (279)
T ss_pred cccCCHHHHHHHHHhcCcEecCCCCcccceehhhccCCCccceEEEEEecccc
Confidence 0024799999999999997642 222222233333333333444555554443
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-11 Score=112.14 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=84.8
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~ 142 (564)
..+.+.+...++.+|||||||+|.++..+++.. +..+|+++|+++.+++.|+++....+ .+++++++|.... . .
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~-~---~ 142 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG-W---E 142 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC-C---c
Confidence 344555666889999999999999999998874 34679999999999999998875443 5789999988542 1 1
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
...+||+|++.....+++ ..+.+.|+|||++++.
T Consensus 143 ~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred ccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 246899999987766553 3477889999999885
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-11 Score=107.03 Aligned_cols=119 Identities=18% Similarity=0.292 Sum_probs=87.0
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++.+|||+|||+|.++..+...+. +|+++|+++.+++. .+ +.....+-. ....+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~~--------~~~~~~~~~-------~~~~~~~ 77 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------RN--------VVFDNFDAQ-------DPPFPDG 77 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------TT--------SEEEEEECH-------THHCHSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------hh--------hhhhhhhhh-------hhhcccc
Confidence 45788999999999977777755544 99999999999987 10 111111100 1123567
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc----------------------CChhHHH
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------VDEPSML 511 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~----------------------~~~~~~~ 511 (564)
+||+|++++++++..+...+++.+.++| +|+| .++++...+. .+...+.
T Consensus 78 ~fD~i~~~~~l~~~~d~~~~l~~l~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (161)
T PF13489_consen 78 SFDLIICNDVLEHLPDPEEFLKELSRLL-KPGG--------YLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELR 148 (161)
T ss_dssp SEEEEEEESSGGGSSHHHHHHHHHHHCE-EEEE--------EEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHH
T ss_pred chhhHhhHHHHhhcccHHHHHHHHHHhc-CCCC--------EEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHH
Confidence 9999999999999999999999999999 9988 7887777531 1123556
Q ss_pred HHHHHcCCeEEE
Q 008457 512 SAATQCGFRLVD 523 (564)
Q Consensus 512 ~~~~~~g~~~~~ 523 (564)
+.++++||++++
T Consensus 149 ~ll~~~G~~iv~ 160 (161)
T PF13489_consen 149 QLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHTTEEEEE
T ss_pred HHHHHCCCEEEE
Confidence 677777887764
|
... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=114.55 Aligned_cols=131 Identities=13% Similarity=-0.031 Sum_probs=96.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||||||+|.++..++.. ...+|+++|.++++++.++++...+ ++.+..-|..+. ++.+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~-------~i~~i~gD~e~l-------p~~~~s 178 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------ECKIIEGDAEDL-------PFPTDY 178 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc-------CCeEEeccHHhC-------CCCCCc
Confidence 5679999999999777666554 3468999999999999999886432 233333333211 234568
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------cCChhHHHHHHHHcCC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------------QVDEPSMLSAATQCGF 519 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r---------------~~~~~~~~~~~~~~g~ 519 (564)
||+|+++.++.+..+.+.+++.+.++| +|+| .+++..... ....+++.+.+++.||
T Consensus 179 FDvVIs~~~L~~~~d~~~~L~e~~rvL-kPGG--------~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF 249 (340)
T PLN02490 179 ADRYVSAGSIEYWPDPQRGIKEAYRVL-KIGG--------KACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGF 249 (340)
T ss_pred eeEEEEcChhhhCCCHHHHHHHHHHhc-CCCc--------EEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCC
Confidence 999999999988888999999999999 9988 665543211 1134577889999999
Q ss_pred eEEEEcCCCC
Q 008457 520 RLVDKWPSKN 529 (564)
Q Consensus 520 ~~~~~~~~~~ 529 (564)
+..++..+..
T Consensus 250 ~~V~i~~i~~ 259 (340)
T PLN02490 250 KDVKLKRIGP 259 (340)
T ss_pred eEEEEEEcCh
Confidence 9988865533
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=107.16 Aligned_cols=145 Identities=13% Similarity=0.192 Sum_probs=110.9
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc--cCCCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
+.......+|||+|||+|..+..++++.+..+++++|+.+.+.+.|++.... ...++++++.|+.... ......+|
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~--~~~~~~~f 116 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL--KALVFASF 116 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh--hccccccc
Confidence 3444568999999999999999999997779999999999999999988654 4478999999996533 24455689
Q ss_pred eEEEEcccccCC----------------ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecC
Q 008457 148 DIVTMVFVLSAV----------------SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRG 211 (564)
Q Consensus 148 D~V~~~~vl~~~----------------~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (564)
|+|+||=-+.-. ..-+...+++...++|||||.+.+.-..
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~------------------------ 172 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP------------------------ 172 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH------------------------
Confidence 999995433221 1224678899999999999999885211
Q ss_pred CCceeeccCHHHHHHHHHhCCCcEEEeeeeeccccc
Q 008457 212 DGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVEN 247 (564)
Q Consensus 212 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~ 247 (564)
-...++.+++.+.+|...++...+.....
T Consensus 173 -------erl~ei~~~l~~~~~~~k~i~~V~p~~~k 201 (248)
T COG4123 173 -------ERLAEIIELLKSYNLEPKRIQFVYPKIGK 201 (248)
T ss_pred -------HHHHHHHHHHHhcCCCceEEEEecCCCCC
Confidence 13567788999999999888777654433
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-10 Score=106.68 Aligned_cols=176 Identities=15% Similarity=0.190 Sum_probs=112.3
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
|.+...-.+ +..+...+.|++|||+|||.|..+..++..+++.|+++|.++..+-..+.--..-+. ...+..+.
T Consensus 98 WrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-----~~~~~~lp 171 (315)
T PF08003_consen 98 WRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-----DPPVFELP 171 (315)
T ss_pred ccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-----CccEEEcC
Confidence 555544333 333333569999999999999988888888999999999987655443321111111 11222222
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCC------CCCCCcEEEEEEee----cc---
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSL------REDQQPAFILCHIF----RQ--- 504 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~------~~~~~~~~~~~~~~----r~--- 504 (564)
.+ ++.+.. .+.||+|++.-|+||..+.-..++.++..| +++|.- -+.....+++...+ ++
T Consensus 172 lg----vE~Lp~--~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L-~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~F 244 (315)
T PF08003_consen 172 LG----VEDLPN--LGAFDTVFSMGVLYHRRSPLDHLKQLKDSL-RPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWF 244 (315)
T ss_pred cc----hhhccc--cCCcCEEEEeeehhccCCHHHHHHHHHHhh-CCCCEEEEEEeeecCCCceEEccCCcccCCCceEE
Confidence 22 222212 468999999999999999999999999999 998731 01111222221111 11
Q ss_pred -CChhHHHHHHHHcCCeEEEEcCCCCCCCCccccccccccCCCC
Q 008457 505 -VDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGH 547 (564)
Q Consensus 505 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (564)
.+...+..+++++||+-+++..+...+..-|+-+. |+..+.+
T Consensus 245 iPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~T~-Wm~~~SL 287 (315)
T PF08003_consen 245 IPSVAALKNWLERAGFKDVRCVDVSPTTIEEQRKTD-WMDFQSL 287 (315)
T ss_pred eCCHHHHHHHHHHcCCceEEEecCccCCHHHhccCC-CcCcccH
Confidence 13356789999999999999888666665555443 7764443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=113.68 Aligned_cols=101 Identities=20% Similarity=0.354 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.|+++..... ..+.+...+.. +..+++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~------~~~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE------QPIEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc------cccCCCceEEE
Confidence 567999999999999998887653 4589999999999999998765433 23444444321 22467899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
++... +.+..++.++.++|||||.++++.+
T Consensus 231 an~~~-----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 231 ANILA-----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EecCH-----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 97643 3456789999999999999999754
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-10 Score=114.70 Aligned_cols=174 Identities=18% Similarity=0.156 Sum_probs=113.7
Q ss_pred EEEEeCCceEEEEEecccccccCCCccceech-hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEc
Q 008457 328 IEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWE-SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 406 (564)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~-~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD 406 (564)
+.+..+|..+.+....+ ..||..+=. ..+..+.. ..++++|||||||||+++..++..++.+|+++|
T Consensus 183 ~~v~E~g~~f~vdl~~g------~ktG~flDqr~~R~~~~~------~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD 250 (396)
T PRK15128 183 LPIEEHGMKLLVDIQGG------HKTGYYLDQRDSRLATRR------YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVD 250 (396)
T ss_pred EEEEECCEEEEEecccc------cccCcChhhHHHHHHHHH------hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEE
Confidence 44666777777764333 356632221 11222221 236889999999999888777766677999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh--cCCCccEEEEeceeeCCC----------ChHHHH
Q 008457 407 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNEGFEVILGTDVSYIPE----------AILPLF 474 (564)
Q Consensus 407 ~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~--~~~~fD~Ii~~d~~y~~~----------~~~~l~ 474 (564)
+|+.+++.+++|+..|++.. .++.+..-|.. +.+..+ ..++||+|+ .|+.|... .+..++
T Consensus 251 ~s~~al~~a~~N~~~Ngl~~--~~v~~i~~D~~-----~~l~~~~~~~~~fDlVi-lDPP~f~~~k~~l~~~~~~y~~l~ 322 (396)
T PRK15128 251 TSQEALDIARQNVELNKLDL--SKAEFVRDDVF-----KLLRTYRDRGEKFDVIV-MDPPKFVENKSQLMGACRGYKDIN 322 (396)
T ss_pred CCHHHHHHHHHHHHHcCCCC--CcEEEEEccHH-----HHHHHHHhcCCCCCEEE-ECCCCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999998742 24555544432 222222 245899998 56555433 355666
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHH----HHcCCeEEEEcCCCCC
Q 008457 475 ATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGFRLVDKWPSKNS 530 (564)
Q Consensus 475 ~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~----~~~g~~~~~~~~~~~~ 530 (564)
....++| +++| .+++|......+.+.|.+.+ .+.|-++.-+...+.|
T Consensus 323 ~~a~~lL-k~gG--------~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~ 373 (396)
T PRK15128 323 MLAIQLL-NPGG--------ILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQA 373 (396)
T ss_pred HHHHHHc-CCCe--------EEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEcCCC
Confidence 7778899 9988 88888777666666665544 4456666666544333
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.2e-10 Score=107.66 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=80.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
++.+|||+|||+|.++..++.... .+|+++|+++.+++.+++++..++.. ..+.+...+..+. +...+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~-------~~~~~ 120 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS---GNVEFVQGDAEAL-------PFPDN 120 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc---cCeEEEecccccC-------CCCCC
Confidence 678999999999988877777664 79999999999999999998765442 3456665555432 12346
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.||+|+++-++.+......+++.+.++| +++|
T Consensus 121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L-~~gG 152 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDIDKALREMYRVL-KPGG 152 (239)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHhc-cCCc
Confidence 8999999888888889999999999999 9988
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-10 Score=97.87 Aligned_cols=125 Identities=20% Similarity=0.169 Sum_probs=85.0
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
...++++|+|||||||.++..++..++.+|+++|+++++++.+++|+.... +.+.+..-|-.+. .
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-----g~v~f~~~dv~~~----------~ 106 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-----GDVEFVVADVSDF----------R 106 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-----CceEEEEcchhhc----------C
Confidence 456899999999999999988888999999999999999999999999832 5566665554332 4
Q ss_pred CCccEEEEeceeeCCCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHH-HHHHHcCCeEEEEcCC
Q 008457 453 EGFEVILGTDVSYIPEAI--LPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML-SAATQCGFRLVDKWPS 527 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~--~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~g~~~~~~~~~ 527 (564)
+++|.+|++...=.+.-+ -+++....++. . ++|-.+.. ...+|. ......|+.+.++++.
T Consensus 107 ~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s----~--------vVYsiH~a---~~~~f~~~~~~~~G~~v~~~~~~ 169 (198)
T COG2263 107 GKFDTVIMNPPFGSQRRHADRPFLLKALEIS----D--------VVYSIHKA---GSRDFVEKFAADLGGTVTHIERA 169 (198)
T ss_pred CccceEEECCCCccccccCCHHHHHHHHHhh----h--------eEEEeecc---ccHHHHHHHHHhcCCeEEEEEEE
Confidence 589988876543222211 22233333333 1 44443332 233554 4456789999998755
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=109.75 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=91.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
+.+..|.+.+......... +|||||||||.+++.++.... .+|+++|+|+.+++.+++|+..|++ .++.....|
T Consensus 94 ~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l----~~~~~~~~d 168 (280)
T COG2890 94 PDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL----VRVLVVQSD 168 (280)
T ss_pred CchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC----ccEEEEeee
Confidence 4455556654421111111 899999999988888887765 4999999999999999999999997 233333337
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCC-------------------------ChHHHHHHHHHHhhccCCCCCCCC
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPE-------------------------AILPLFATAKELTASSNKSLREDQ 492 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-------------------------~~~~l~~~~~~ll~~~~g~~~~~~ 492 (564)
|... ..++||+||++...-..+ .+..++..+...| +++|
T Consensus 169 lf~~---------~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l-~~~g------ 232 (280)
T COG2890 169 LFEP---------LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDIL-KPGG------ 232 (280)
T ss_pred cccc---------cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHc-CCCc------
Confidence 7643 234999999774322111 3556677777788 7765
Q ss_pred CcEEEEEEeeccCChhHHHHHHHHcC-CeEEEE
Q 008457 493 QPAFILCHIFRQVDEPSMLSAATQCG-FRLVDK 524 (564)
Q Consensus 493 ~~~~~~~~~~r~~~~~~~~~~~~~~g-~~~~~~ 524 (564)
.+++-... .. ...+.+.+.+.| |.....
T Consensus 233 --~l~le~g~-~q-~~~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 233 --VLILEIGL-TQ-GEAVKALFEDTGFFEIVET 261 (280)
T ss_pred --EEEEEECC-Cc-HHHHHHHHHhcCCceEEEE
Confidence 44443222 22 335677777888 444443
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=8e-11 Score=99.68 Aligned_cols=107 Identities=23% Similarity=0.327 Sum_probs=84.9
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
|.+|||+|||+|.++..+++.+ ..+++|+|+++..++.|+.+..... .+++++++|+.... ..+++++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhccCceeEEEEEC
Confidence 4689999999999999999996 6899999999999999998876543 57999999986543 24578999999997
Q ss_pred ccccCCC------hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 154 FVLSAVS------PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 154 ~vl~~~~------~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
--+.... .+....+++++.++|||||.+++..
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7554321 1245789999999999999998864
|
... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=108.01 Aligned_cols=128 Identities=13% Similarity=0.012 Sum_probs=93.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh-hhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~-~~~~~ 453 (564)
.+.+|||||||+|.++..++... ..+|+++|+++.+++.+++|+..++. .++.+...|+. +.+. .+.++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~----~~v~~~~~d~~-----~~l~~~~~~~ 110 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL----TNLRLLCGDAV-----EVLLDMFPDG 110 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC----CCEEEEecCHH-----HHHHHHcCcc
Confidence 56799999999998877776654 45899999999999999999988765 34666555441 1121 14567
Q ss_pred CccEEEEecee-eCC-------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEE
Q 008457 454 GFEVILGTDVS-YIP-------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV 522 (564)
Q Consensus 454 ~fD~Ii~~d~~-y~~-------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~ 522 (564)
+||+|++.-+. +.. ...+.+++.+.++| +|+| .++++...+.... .+++.+.+.|+.+.
T Consensus 111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~L-kpgG--------~l~i~~~~~~~~~-~~~~~~~~~g~~~~ 177 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKL-KPGG--------EIHFATDWEGYAE-YMLEVLSAEGGFLV 177 (202)
T ss_pred ccceEEEECCCCCCCccccccccCCHHHHHHHHHHc-CCCC--------EEEEEcCCHHHHH-HHHHHHHhCccccc
Confidence 89999875321 111 12578999999999 9988 8888765544332 57888889998877
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=116.16 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=84.2
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCcee
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.....++.+|||+|||+|.++..++.. +.+++|+|+++.|+..|+.+....+ .++.+.++|+... ++++++||
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l----~~~~~~~D 250 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL----PLSSESVD 250 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC----CcccCCCC
Confidence 334467889999999999998877665 7899999999999999988765433 3478888998653 34578999
Q ss_pred EEEEccccc-------CCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 149 IVTMVFVLS-------AVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 149 ~V~~~~vl~-------~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+|+++--.. +...+....++.++.++|||||++++..+
T Consensus 251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 999963221 11113367899999999999999988643
|
This family is found exclusively in the Archaea. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.8e-10 Score=103.27 Aligned_cols=137 Identities=19% Similarity=0.208 Sum_probs=94.9
Q ss_pred CCCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh
Q 008457 372 PTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE 449 (564)
Q Consensus 372 ~~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~ 449 (564)
..+.++.+|||+|||+|.++..++.. ...+|+++|.++.+++.+++|+..+++. .++.+...|..+ .+ +
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~---~~v~~~~~d~~~-----~l-~ 106 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL---NNIVLIKGEAPE-----IL-F 106 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC---CCeEEEEechhh-----hH-h
Confidence 35568899999999999888777654 2468999999999999999999988743 345554443321 11 1
Q ss_pred hcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCCCC
Q 008457 450 ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKN 529 (564)
Q Consensus 450 ~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 529 (564)
...++||.|++.- ....+..+++.+.++| +|+| ++++. ..+-.......+.+++.||.+ ++.+...
T Consensus 107 ~~~~~~D~V~~~~---~~~~~~~~l~~~~~~L-kpgG--------~lv~~-~~~~~~~~~~~~~l~~~g~~~-~~~~~~~ 172 (198)
T PRK00377 107 TINEKFDRIFIGG---GSEKLKEIISASWEII-KKGG--------RIVID-AILLETVNNALSALENIGFNL-EITEVII 172 (198)
T ss_pred hcCCCCCEEEECC---CcccHHHHHHHHHHHc-CCCc--------EEEEE-eecHHHHHHHHHHHHHcCCCe-EEEEEeh
Confidence 1235899998632 3456788999999999 9988 66653 333333456778888899854 4443433
Q ss_pred CC
Q 008457 530 SA 531 (564)
Q Consensus 530 ~~ 531 (564)
+.
T Consensus 173 ~~ 174 (198)
T PRK00377 173 AK 174 (198)
T ss_pred hh
Confidence 33
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=105.48 Aligned_cols=98 Identities=22% Similarity=0.240 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..+++. +.....+.... ++ +.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~-----v~~~~~d~~~~-------~~-~~ 93 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLP-----LRTDAYDINAA-------AL-NE 93 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCC-----ceeEeccchhc-------cc-cC
Confidence 3456799999999998887777654 58999999999999999988877652 33333333211 11 34
Q ss_pred CccEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
+||+|+++.++++. ...+.+++.+.++| +|+|
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG 127 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHT-RPGG 127 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCc
Confidence 79999999887654 46789999999999 9988
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.5e-10 Score=105.75 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=96.7
Q ss_pred hHHHHHHHHhcCCC-CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 360 SAHLMAAVLARNPT-IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 360 ~~~~l~~~l~~~~~-~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
.+..|.+.+..... .....+|||||||+|.++..++... ..+|+++|+|+.+++.+++|+..|+. ++..-|
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~-------~~~~~D 141 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG-------TVHEGD 141 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------EEEEee
Confidence 34555655544221 1234589999999998888877654 45899999999999999999988752 344445
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCC---------------------------ChHHHHHHHHHHhhccCCCCCC
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------------------------AILPLFATAKELTASSNKSLRE 490 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------------------~~~~l~~~~~~ll~~~~g~~~~ 490 (564)
+.+. . .....++||+|+++. .|.+. .+..+++.+.++| +|+|
T Consensus 142 ~~~~--l---~~~~~~~fDlVv~NP-Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L-~~gG---- 210 (251)
T TIGR03704 142 LYDA--L---PTALRGRVDILAANA-PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL-APGG---- 210 (251)
T ss_pred chhh--c---chhcCCCEeEEEECC-CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc-CCCC----
Confidence 4321 1 011135799988654 44321 1347888888999 9988
Q ss_pred CCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 491 DQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 491 ~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+++.+...+ ...+...+.+.||+..-+.
T Consensus 211 ----~l~l~~~~~~--~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 211 ----HLLVETSERQ--APLAVEAFARAGLIARVAS 239 (251)
T ss_pred ----EEEEEECcch--HHHHHHHHHHCCCCceeeE
Confidence 8887766544 3468888889999887654
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.8e-10 Score=105.56 Aligned_cols=141 Identities=14% Similarity=0.177 Sum_probs=103.8
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+|+.......++.+|||||||+|.++..++.. ..+|+++|.++.+++.+++|+..++. .+.+...++...
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--- 107 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL-----KIDYRQTTAEEL--- 107 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC-----ceEEEecCHHHh---
Confidence 456665554567889999999999777666654 46899999999999999999876553 234443333221
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc--------------------
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------- 504 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-------------------- 504 (564)
.....++||+|+++.++.+......+++.+.++| +++| .++++...+.
T Consensus 108 ---~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L-~~gG--------~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (233)
T PRK05134 108 ---AAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLV-KPGG--------LVFFSTLNRNLKSYLLAIVGAEYVLRMLPK 175 (233)
T ss_pred ---hhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHc-CCCc--------EEEEEecCCChHHHHHHHhhHHHHhhhcCc
Confidence 1123468999999999999999999999999999 9988 6776643211
Q ss_pred --------CChhHHHHHHHHcCCeEEEEcC
Q 008457 505 --------VDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 505 --------~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
.+..++.+.+.+.||++.+...
T Consensus 176 ~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 176 GTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred ccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 1224577788899999998863
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-10 Score=103.28 Aligned_cols=105 Identities=20% Similarity=0.260 Sum_probs=76.5
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc----cCCCCCCc
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQISPSS 146 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~~ 146 (564)
...++.+|||+|||+|.++..+++.. +..+|+++|+|+.+ . ..++.+++.|+..... ...++.++
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~----~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P----IENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c----CCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 34788999999999999999988875 45689999999864 1 1357888888765321 01235678
Q ss_pred eeEEEEccccc--------CC-ChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 147 IDIVTMVFVLS--------AV-SPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 147 fD~V~~~~vl~--------~~-~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
||+|++....+ |. +.+....++.++.++|+|||.+++..+
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 99999965322 11 112357899999999999999998643
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=107.30 Aligned_cols=108 Identities=14% Similarity=0.054 Sum_probs=83.5
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~ 143 (564)
..+.+.+...++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|+++....+ .++.+..+|.... +. +
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~---~ 141 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG-WP---A 141 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC-CC---c
Confidence 344556666788999999999999998888773 489999999999999998765433 4588888887432 11 3
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.++||+|++...+++++ +.+.+.|+|||.+++...
T Consensus 142 ~~~fD~I~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 47899999988766652 456789999999998654
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=109.08 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=94.8
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-------CCCeeEEEecCC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-------ETRVSTFVCDLI 134 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-------~~~i~~~~~d~~ 134 (564)
|+...++.... .++..++|+|||-|..+...-+.. -.+++|+|++...++.|+++.... .-.+.|+++|..
T Consensus 105 wIKs~LI~~y~-~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 105 WIKSVLINLYT-KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred HHHHHHHHHHh-ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 44444444333 678999999999999887776663 347999999999999999875421 124678899987
Q ss_pred cccccC--CCCCCceeEEEEcccccCC--ChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 135 SDDLSR--QISPSSIDIVTMVFVLSAV--SPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 135 ~~~~~~--~~~~~~fD~V~~~~vl~~~--~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
...+.. ++++.+||+|-|.+++|+- +.+..+.+|.++.+.|||||+++-+.+.
T Consensus 183 ~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 183 KERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred hhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 665533 2355569999999999954 5778889999999999999999987654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=105.25 Aligned_cols=114 Identities=18% Similarity=0.091 Sum_probs=84.9
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~ 143 (564)
..+.+.+...++.+|||+|||+|.++..+++..++.+|+++|+|+.+++.++++....+ .+++++.+|+... + +..
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~-~--~~~ 106 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC-L--AQL 106 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH-H--hhC
Confidence 33455566578899999999999999999887778899999999999999998765433 4688888887431 1 111
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
...+|.++... . .....+++++.+.|+|||.+++....
T Consensus 107 ~~~~d~v~~~~----~--~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 107 APAPDRVCIEG----G--RPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCCEEEEEC----C--cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 22356665422 1 34678999999999999999987543
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-09 Score=105.08 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=83.2
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
.-+.+.....+.++.+|||+|||+|.++..++... ..+|+++|+++.+++.++++..... ..+.+...|....
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~ 81 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG-----PNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-----CceEEEecccccC
Confidence 33444454556678899999999998777776654 4689999999999999998833211 3455555444322
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
++..++||+|++..++.+..+...+++.+.++| +|+|
T Consensus 82 -------~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L-~~gG 118 (241)
T PRK08317 82 -------PFPDGSFDAVRSDRVLQHLEDPARALAEIARVL-RPGG 118 (241)
T ss_pred -------CCCCCCceEEEEechhhccCCHHHHHHHHHHHh-cCCc
Confidence 234568999999999999889999999999999 9988
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=98.18 Aligned_cols=130 Identities=16% Similarity=0.264 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
++...|.|+|||.+.++..+.+ +.+|...|+-+. +-.+..+|+... |++++++|+++++
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~--------------n~~Vtacdia~v----PL~~~svDv~Vfc 129 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP--------------NPRVTACDIANV----PLEDESVDVAVFC 129 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS-S--------------STTEEES-TTS-----S--TT-EEEEEEE
T ss_pred CCCEEEEECCCchHHHHHhccc---CceEEEeeccCC--------------CCCEEEecCccC----cCCCCceeEEEEE
Confidence 4568999999999998865432 467999998541 224667898543 6789999999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
..|+-. +...++.++.|+|||||.|.|.+... + +-+.+.+.+.++..||
T Consensus 130 LSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~S------R----------------------f~~~~~F~~~~~~~GF 178 (219)
T PF05148_consen 130 LSLMGT---NWPDFIREANRVLKPGGILKIAEVKS------R----------------------FENVKQFIKALKKLGF 178 (219)
T ss_dssp S---SS----HHHHHHHHHHHEEEEEEEEEEEEGG------G-----------------------S-HHHHHHHHHCTTE
T ss_pred hhhhCC---CcHHHHHHHHheeccCcEEEEEEecc------c----------------------CcCHHHHHHHHHHCCC
Confidence 998876 78899999999999999999987542 1 1257888899999999
Q ss_pred cEEEeeeeeccccccccccccceeEEEEEEEecCC
Q 008457 234 DVEELGLCCKQVENRARELVMNRRWVQAVFCSSGG 268 (564)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 268 (564)
+........ ..|+...|.|...
T Consensus 179 ~~~~~d~~n-------------~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 179 KLKSKDESN-------------KHFVLFEFKKIRK 200 (219)
T ss_dssp EEEEEE--S-------------TTEEEEEEEE-SS
T ss_pred eEEecccCC-------------CeEEEEEEEEcCc
Confidence 987643322 2355566776663
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-10 Score=100.79 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=90.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
.-.++||+|||.|.++..++.. +.+++++|+++.+++.+++.+.. . ..|.+...+.... .+.++|
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~----~~V~~~~~dvp~~--------~P~~~F 107 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--L----PHVEWIQADVPEF--------WPEGRF 107 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----------SS-E
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--C----CCeEEEECcCCCC--------CCCCCe
Confidence 4468999999999888887665 57899999999999999998753 1 4577776665432 367899
Q ss_pred cEEEEeceeeCCCC---hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------cCChhHHHHHHHHcCCeEEEE
Q 008457 456 EVILGTDVSYIPEA---ILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------QVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 456 D~Ii~~d~~y~~~~---~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--------~~~~~~~~~~~~~~g~~~~~~ 524 (564)
|+|+.++++|+-.. +..+++.+...| +|+| .+++++.+. ..+.....+++.+.=.+|+.+
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L-~pgG--------~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~ 178 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAAL-APGG--------HLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERV 178 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTE-EEEE--------EEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEE
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHh-CCCC--------EEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEE
Confidence 99999999999765 456778888888 9988 888888763 123345667777766677766
Q ss_pred cCCCCCCC
Q 008457 525 WPSKNSAS 532 (564)
Q Consensus 525 ~~~~~~~~ 532 (564)
.-.+.+.+
T Consensus 179 ~~~~~~~~ 186 (201)
T PF05401_consen 179 ECRGGSPN 186 (201)
T ss_dssp EEE-SSTT
T ss_pred EEcCCCCC
Confidence 43333333
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.3e-10 Score=110.76 Aligned_cols=179 Identities=19% Similarity=0.183 Sum_probs=123.7
Q ss_pred EEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEc
Q 008457 327 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 406 (564)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD 406 (564)
.+.+...|..+.+..... ..||+-++ -+..-.++... .+|++||+|-|-||+++..++..++++||.+|
T Consensus 179 ~~~i~E~g~kf~v~~~~g------~kTGfFlD--qR~~R~~l~~~---~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD 247 (393)
T COG1092 179 EVVIEENGVKFLVDLVDG------LKTGFFLD--QRDNRRALGEL---AAGKRVLNLFSYTGGFSVHAALGGASEVTSVD 247 (393)
T ss_pred cEEEEeCCeEEEEecCCc------ccceeeHH--hHHHHHHHhhh---ccCCeEEEecccCcHHHHHHHhcCCCceEEEe
Confidence 445555666676654333 47885444 33333333322 36999999999999999988888888999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh--cCCCccEEEEeceeeC---------CCChHHHHH
Q 008457 407 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNEGFEVILGTDVSYI---------PEAILPLFA 475 (564)
Q Consensus 407 ~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~--~~~~fD~Ii~~d~~y~---------~~~~~~l~~ 475 (564)
.|..+++.+++|+++|++... + .+|-..+.++.+... ...+||+||.=.+-|. ..++..|+.
T Consensus 248 ~S~~al~~a~~N~~LNg~~~~--~-----~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~ 320 (393)
T COG1092 248 LSKRALEWARENAELNGLDGD--R-----HRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLND 320 (393)
T ss_pred ccHHHHHHHHHHHHhcCCCcc--c-----eeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHH
Confidence 999999999999999998642 2 233333445444432 3459999996544443 237889999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHH----HHcCCeEEEEc-CCCCCCC
Q 008457 476 TAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGFRLVDKW-PSKNSAS 532 (564)
Q Consensus 476 ~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~----~~~g~~~~~~~-~~~~~~~ 532 (564)
.+.++| +|+| .+++|...+..+.+.|.+.+ ...|..+..+. ..++++.
T Consensus 321 ~~~~iL-~pgG--------~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~ 373 (393)
T COG1092 321 LALRLL-APGG--------TLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEGEGQPPDH 373 (393)
T ss_pred HHHHHc-CCCC--------EEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeeccCCCCCc
Confidence 999999 9988 88888888888876665444 44566666663 3334433
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-09 Score=108.30 Aligned_cols=144 Identities=19% Similarity=0.259 Sum_probs=100.3
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~ 435 (564)
.=+.+..+.+.+..... ++.+|||||||+|.++..++.. ...+|+++|+|+.+++.+++|+..++. ++.+..
T Consensus 234 PRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-----rV~fi~ 306 (423)
T PRK14966 234 PRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-----RVEFAH 306 (423)
T ss_pred CCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----cEEEEE
Confidence 33556677777765432 5569999999999888777654 456999999999999999999988753 467777
Q ss_pred eecCCCccchhhhhhcCCCccEEEEeceeeCCC--------------------------ChHHHHHHHHHHhhccCCCCC
Q 008457 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------------------------AILPLFATAKELTASSNKSLR 489 (564)
Q Consensus 436 l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~l~~~~~~ll~~~~g~~~ 489 (564)
.||.+... + ..++||+|+++. .|... .+..+++.+.+.| +|+|
T Consensus 307 gDl~e~~l-----~-~~~~FDLIVSNP-PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L-kpgG--- 375 (423)
T PRK14966 307 GSWFDTDM-----P-SEGKWDIIVSNP-PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL-AEGG--- 375 (423)
T ss_pred cchhcccc-----c-cCCCccEEEECC-CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc-CCCc---
Confidence 77754311 0 134799999765 34221 2346777778899 9987
Q ss_pred CCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 490 EDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 490 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+++..... ....+.+.+.+.||...++.
T Consensus 376 -----~lilEiG~~--Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 376 -----FLLLEHGFD--QGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred -----EEEEEECcc--HHHHHHHHHHHCCCcEEEEE
Confidence 665543332 23357777888899876664
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-10 Score=102.72 Aligned_cols=109 Identities=8% Similarity=0.030 Sum_probs=81.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..+.+|||||||+|.++..+++.++.+|+++|.++.+++.+++|++.++.. ++.+..-|+.+ .+ .....+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~----~v~~~~~D~~~-----~l-~~~~~~ 121 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG----NARVVNTNALS-----FL-AQPGTP 121 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC----cEEEEEchHHH-----HH-hhcCCC
Confidence 367799999999998888777777889999999999999999999998762 46665554422 11 112347
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHH--hhccCCCCCCCCCcEEEEEEeec
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKEL--TASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~l--l~~~~g~~~~~~~~~~~~~~~~r 503 (564)
||+|+ +|..|.....+.+++.+... | .+++ .+|+.+..+
T Consensus 122 fDlV~-~DPPy~~g~~~~~l~~l~~~~~l-~~~~--------iv~ve~~~~ 162 (199)
T PRK10909 122 HNVVF-VDPPFRKGLLEETINLLEDNGWL-ADEA--------LIYVESEVE 162 (199)
T ss_pred ceEEE-ECCCCCCChHHHHHHHHHHCCCc-CCCc--------EEEEEecCC
Confidence 99987 56678887788888877763 6 6655 777776654
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=103.82 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=89.8
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++.+|||+|||+|.++..++.. ..+|+++|+++++++.+++++..++.. .++.+...|+.+. . +
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~~~---------~-~ 118 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVA---GNVEFEVNDLLSL---------C-G 118 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECChhhC---------C-C
Confidence 457889999999999777777665 458999999999999999998776542 3455555544322 2 5
Q ss_pred CccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-----------------------ccCChh
Q 008457 454 GFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIF-----------------------RQVDEP 508 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-----------------------r~~~~~ 508 (564)
+||+|++++++++. .....+++.+.+++ +++ .++.+... +..+..
T Consensus 119 ~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~-~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
T TIGR02021 119 EFDIVVCMDVLIHYPASDMAKALGHLASLT-KER---------VIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMT 188 (219)
T ss_pred CcCEEEEhhHHHhCCHHHHHHHHHHHHHHh-CCC---------EEEEECCCchHHHHHHHHHhhCcCcccccceEEecHH
Confidence 89999999998664 34667778887777 542 22222111 011334
Q ss_pred HHHHHHHHcCCeEEEEc
Q 008457 509 SMLSAATQCGFRLVDKW 525 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~ 525 (564)
.+.+.+.+.||++...-
T Consensus 189 ~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 189 DLERALGELGWKIVREG 205 (219)
T ss_pred HHHHHHHHcCceeeeee
Confidence 67788888899998775
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-10 Score=101.93 Aligned_cols=113 Identities=14% Similarity=0.059 Sum_probs=92.7
Q ss_pred cchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccc
Q 008457 60 RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDL 138 (564)
Q Consensus 60 ~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~ 138 (564)
..++...+.+.+...++.+|||||||+|+.+..|++. ..+|+.+|..+...+.|+++....+ .|+.+.++|...- +
T Consensus 57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G-~ 133 (209)
T COG2518 57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG-W 133 (209)
T ss_pred CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC-C
Confidence 3356667778888899999999999999999999998 4599999999999999999887655 4799999998642 2
Q ss_pred cCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 139 ~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+ +...||.|++......+|. .+.+.||+||++++-.-
T Consensus 134 ~---~~aPyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 P---EEAPYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred C---CCCCcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 1 3478999999998888862 25677899999998543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.6e-10 Score=106.86 Aligned_cols=110 Identities=14% Similarity=0.019 Sum_probs=79.9
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
++.+.+.....++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.++++... ..+...|....
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~~---------~~~~~~d~~~~--- 97 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDAA---------DHYLAGDIESL--- 97 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCCC---------CCEEEcCcccC---
Confidence 344443333335679999999999777666554 46899999999999999887421 12222232211
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
++.+++||+|+++.++.+..+...+++.+.++| +|+| .++++.
T Consensus 98 ----~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~L-k~gG--------~l~~~~ 140 (251)
T PRK10258 98 ----PLATATFDLAWSNLAVQWCGNLSTALRELYRVV-RPGG--------VVAFTT 140 (251)
T ss_pred ----cCCCCcEEEEEECchhhhcCCHHHHHHHHHHHc-CCCe--------EEEEEe
Confidence 234568999999998888889999999999999 9988 777664
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.3e-10 Score=95.21 Aligned_cols=153 Identities=14% Similarity=0.249 Sum_probs=107.1
Q ss_pred CCccceec---hhHHHHHHHHhcCCC---CCCCC-eEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhc
Q 008457 351 RSTGLMLW---ESAHLMAAVLARNPT---IVAGK-KVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTAN 422 (564)
Q Consensus 351 ~~~G~~~W---~~~~~l~~~l~~~~~---~~~~~-~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n 422 (564)
++.| -+| ++...+.+|+..+-. ..+.. +|||||||.|.+-.-++..+ ....+++|+++.++++|+.-++.+
T Consensus 36 gd~G-EvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~ 114 (227)
T KOG1271|consen 36 GDEG-EVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD 114 (227)
T ss_pred CCcc-ceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc
Confidence 4555 355 445678899887643 23334 99999999997766666665 346999999999999988887888
Q ss_pred CCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEe---ceeeC-----CCChHHHHHHHHHHhhccCCCCCCCCCc
Q 008457 423 LKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGT---DVSYI-----PEAILPLFATAKELTASSNKSLREDQQP 494 (564)
Q Consensus 423 ~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~---d~~y~-----~~~~~~l~~~~~~ll~~~~g~~~~~~~~ 494 (564)
+.+ +.|++.++|..+++ ...++||+|+-- |.+-- ..-+..-+..+.++| +|+|
T Consensus 115 ~~~---n~I~f~q~DI~~~~-------~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll-~~~g-------- 175 (227)
T KOG1271|consen 115 GFS---NEIRFQQLDITDPD-------FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLL-SPGG-------- 175 (227)
T ss_pred CCC---cceeEEEeeccCCc-------ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhcc-CCCc--------
Confidence 775 55999999987652 245689988822 22211 112245578999999 9988
Q ss_pred EEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 495 AFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 495 ~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.|+++.- +.+.+++.+.....||.+..-.
T Consensus 176 ifvItSC--N~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 176 IFVITSC--NFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred EEEEEec--CccHHHHHHHHhcCCeEEEEee
Confidence 8888644 4455667887777777765543
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.3e-10 Score=103.38 Aligned_cols=146 Identities=25% Similarity=0.302 Sum_probs=94.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
...++||||+|.|..+..++..+ .+|++.|.|+.|....+++. |.+.+..+.. -.+.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~kg--------~~vl~~~~w~----~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKKG--------FTVLDIDDWQ----QTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhCC--------CeEEehhhhh----ccCCceEEEeehh
Confidence 56789999999999999999885 45999999999988877652 2222322111 1346899999999
Q ss_pred cccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCc
Q 008457 155 VLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFD 234 (564)
Q Consensus 155 vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 234 (564)
+|..- ++|..+|+++++.|+|+|.+++....+....-+.-........+..-. .+ ..+--..+.+.+.|+.+||+
T Consensus 160 vLDRc--~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~--~g-~~~E~~v~~l~~v~~p~GF~ 234 (265)
T PF05219_consen 160 VLDRC--DRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPV--KG-ATFEEQVSSLVNVFEPAGFE 234 (265)
T ss_pred hhhcc--CCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCC--CC-CcHHHHHHHHHHHHHhcCCE
Confidence 99876 588999999999999999999965443221100000000000000000 01 11111234455899999999
Q ss_pred EEEee
Q 008457 235 VEELG 239 (564)
Q Consensus 235 ~~~~~ 239 (564)
++...
T Consensus 235 v~~~t 239 (265)
T PF05219_consen 235 VERWT 239 (265)
T ss_pred EEEEe
Confidence 97643
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.4e-10 Score=98.64 Aligned_cols=124 Identities=10% Similarity=0.116 Sum_probs=94.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||||||.|.+...+......+..++|++++.+..+.++ + +.+.+.|..+ .+..+++++|
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G-------v~Viq~Dld~-----gL~~f~d~sF 76 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G-------VSVIQGDLDE-----GLADFPDQSF 76 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C-------CCEEECCHHH-----hHhhCCCCCc
Confidence 6789999999999887777776677899999999877655443 3 3455555443 3446788999
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--------------------------------c
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF--------------------------------R 503 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~--------------------------------r 503 (564)
|+||.++++-.......+++.+.|+- + .++++++. |
T Consensus 77 D~VIlsqtLQ~~~~P~~vL~EmlRVg-r-----------~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih 144 (193)
T PF07021_consen 77 DYVILSQTLQAVRRPDEVLEEMLRVG-R-----------RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIH 144 (193)
T ss_pred cEEehHhHHHhHhHHHHHHHHHHHhc-C-----------eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcc
Confidence 99999999999888888888886665 3 45555554 2
Q ss_pred cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
-.+..+|.+.|++.|+++++..-.
T Consensus 145 ~~Ti~DFe~lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 145 LCTIKDFEDLCRELGIRIEERVFL 168 (193)
T ss_pred cccHHHHHHHHHHCCCEEEEEEEE
Confidence 334578999999999999998644
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-10 Score=91.06 Aligned_cols=102 Identities=25% Similarity=0.376 Sum_probs=82.5
Q ss_pred eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc-cccCCCeeEEEecCCcccccCCCCCCceeEEEEcccc
Q 008457 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK-DFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVL 156 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl 156 (564)
+|+|+|||.|.++..+++ .+..+++++|+++.+++.+++.. .....++++...|+..... ...++||+|+++.++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP---EADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc---ccCCceEEEEEccce
Confidence 589999999999998887 45789999999999999888322 2233568888888865322 245789999999999
Q ss_pred cCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 157 SAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 157 ~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+++ ......+++.+.+.|+|||.+++.
T Consensus 77 ~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 884 268889999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-10 Score=105.58 Aligned_cols=123 Identities=11% Similarity=0.141 Sum_probs=78.6
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~ 433 (564)
..|.. .+.+.+ ...++.+|||+|||||-++..++... ..+|+++|+|+.|++.+++.+...+. .++..
T Consensus 33 ~~wr~--~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~----~~i~~ 102 (233)
T PF01209_consen 33 RRWRR--KLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL----QNIEF 102 (233)
T ss_dssp ----S--HHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEE
T ss_pred HHHHH--HHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC----CCeeE
Confidence 45666 333443 23367899999999997777676643 35999999999999999999887654 25555
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
...|-.+- ++++++||+|+++=.+.+..+....++.+.++| +|+| ++.+.-..+.
T Consensus 103 v~~da~~l-------p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVL-kPGG--------~l~ile~~~p 157 (233)
T PF01209_consen 103 VQGDAEDL-------PFPDNSFDAVTCSFGLRNFPDRERALREMYRVL-KPGG--------RLVILEFSKP 157 (233)
T ss_dssp EE-BTTB---------S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHE-EEEE--------EEEEEEEEB-
T ss_pred EEcCHHHh-------cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHc-CCCe--------EEEEeeccCC
Confidence 54443321 467789999999988989899999999999999 9988 6555544443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-09 Score=109.79 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=88.5
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+...++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++....+.++.+.++|+..... .+..++||
T Consensus 238 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~--~~~~~~fD 315 (427)
T PRK10901 238 TLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ--WWDGQPFD 315 (427)
T ss_pred HHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh--hcccCCCC
Confidence 3455678999999999999999999998766799999999999999998877655567888888864211 12456899
Q ss_pred EEEEccc------ccC-------CChh-------HHHHHHHHHHhccCCCeEEEEEecC
Q 008457 149 IVTMVFV------LSA-------VSPE-------KMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 149 ~V~~~~v------l~~-------~~~~-------~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.|++..- +.+ ...+ ....+|..+.++|||||.+++++-.
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9996331 111 1111 2357899999999999999987643
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-09 Score=101.84 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=96.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..+.+|||+|||+|.++..++..+ .+|+++|.++.+++.+++++..++.. .+.+...+..+. ....+++
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~----~~~~~~~d~~~~------~~~~~~~ 112 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLL----KIEYRCTSVEDL------AEKGAKS 112 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEeCCHHHh------hcCCCCC
Confidence 468899999999997777666544 46999999999999999998876541 244433332211 1112368
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc----------------------------CC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------------VD 506 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~----------------------------~~ 506 (564)
||+|++..++.+......+++.+.++| +++| .++++...+. .+
T Consensus 113 ~D~i~~~~~l~~~~~~~~~l~~~~~~L-~~gG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (224)
T TIGR01983 113 FDVVTCMEVLEHVPDPQAFIRACAQLL-KPGG--------ILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIK 183 (224)
T ss_pred ccEEEehhHHHhCCCHHHHHHHHHHhc-CCCc--------EEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCC
Confidence 999999999999999999999999999 9987 6665542111 12
Q ss_pred hhHHHHHHHHcCCeEEEEcC
Q 008457 507 EPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 507 ~~~~~~~~~~~g~~~~~~~~ 526 (564)
...+.+.+.+.||++.++..
T Consensus 184 ~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 184 PSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred HHHHHHHHHHcCCeeeeeee
Confidence 23567788899999998763
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-09 Score=91.03 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=79.6
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccch
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE 445 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~ 445 (564)
++.......++.+|||||||+|.++..++... ..+|+++|+++.+++.+++|+..++.. ++.+...+.... .
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~--~- 82 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS----NIVIVEGDAPEA--L- 82 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC----ceEEEecccccc--C-
Confidence 33343344567899999999998888787764 469999999999999999999887652 344443332210 0
Q ss_pred hhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 446 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 446 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
.....+||+|++... ......+++.+.++| +|+| .+++..
T Consensus 83 ---~~~~~~~D~v~~~~~---~~~~~~~l~~~~~~L-k~gG--------~li~~~ 122 (124)
T TIGR02469 83 ---EDSLPEPDRVFIGGS---GGLLQEILEAIWRRL-RPGG--------RIVLNA 122 (124)
T ss_pred ---hhhcCCCCEEEECCc---chhHHHHHHHHHHHc-CCCC--------EEEEEe
Confidence 112348999987542 345678999999999 9988 776653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-09 Score=102.76 Aligned_cols=128 Identities=20% Similarity=0.245 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
++.+|||+|||+|.++..++...++.+|+++|+|+.+++.|+++....+ ++++++|+... +... ..++||+|+++-
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~-l~~~-~~~~fDlVv~NP 161 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDA-LPTA-LRGRVDILAANA 161 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhh-cchh-cCCCEeEEEECC
Confidence 3468999999999999999988878899999999999999998865432 57888887532 1111 135799999964
Q ss_pred cc------cCCCh------------------hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeec
Q 008457 155 VL------SAVSP------------------EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVR 210 (564)
Q Consensus 155 vl------~~~~~------------------~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (564)
-. ..+++ +-...++..+.++|+|||.+++.....
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---------------------- 219 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---------------------- 219 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc----------------------
Confidence 21 11111 124578888889999999999753211
Q ss_pred CCCceeeccCHHHHHHHHHhCCCcEEE
Q 008457 211 GDGTRAFYFSNDFLTSLFKENGFDVEE 237 (564)
Q Consensus 211 ~~~~~~~~~~~~~l~~~l~~aGf~~~~ 237 (564)
...++..++++.||....
T Consensus 220 ---------~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 220 ---------QAPLAVEAFARAGLIARV 237 (251)
T ss_pred ---------hHHHHHHHHHHCCCCcee
Confidence 245677888899987654
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-10 Score=96.79 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=80.5
Q ss_pred CCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 377 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
|.+|||+|||+|.+...++..+..+++++|+++.+++.++.|+..++.. .++++..-|+.+. ...+..++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~---~~~~~~~~D~~~~-----~~~~~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD---DRVEVIVGDARDL-----PEPLPDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT---TTEEEEESHHHHH-----HHTCTTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC---ceEEEEECchhhc-----hhhccCceeE
Confidence 4689999999998888888777689999999999999999999998764 4577766655322 1234678999
Q ss_pred EEEEeceeeCC--------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 457 VILGTDVSYIP--------EAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 457 ~Ii~~d~~y~~--------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
+|+++...... .....+++.+.++| +++| ++++..
T Consensus 73 ~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L-~~gG--------~~~~~~ 115 (117)
T PF13659_consen 73 LIVTNPPYGPRSGDKAALRRLYSRFLEAAARLL-KPGG--------VLVFIT 115 (117)
T ss_dssp EEEE--STTSBTT----GGCHHHHHHHHHHHHE-EEEE--------EEEEEE
T ss_pred EEEECCCCccccccchhhHHHHHHHHHHHHHHc-CCCe--------EEEEEe
Confidence 99976554432 24578899999999 9988 666654
|
... |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-09 Score=104.71 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=84.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC-CCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~-~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++.. +.+|+++|+|+.|++.+++|........ ....+.+...|+.. .+++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~----------l~~~ 212 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES----------LSGK 212 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh----------cCCC
Confidence 6789999999999877777765 4689999999999999999987542210 01234444444321 1368
Q ss_pred ccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----------------------c--CChh
Q 008457 455 FEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR----------------------Q--VDEP 508 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r----------------------~--~~~~ 508 (564)
||+|++.+++++... ...+++.+.++. ++ .++++...+ . .+..
T Consensus 213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~l~--~g---------~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~e 281 (315)
T PLN02585 213 YDTVTCLDVLIHYPQDKADGMIAHLASLA--EK---------RLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEA 281 (315)
T ss_pred cCEEEEcCEEEecCHHHHHHHHHHHHhhc--CC---------EEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHH
Confidence 999999999876433 334555555433 22 344443221 0 1245
Q ss_pred HHHHHHHHcCCeEEEEc
Q 008457 509 SMLSAATQCGFRLVDKW 525 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~ 525 (564)
++.+.+++.||++.+..
T Consensus 282 el~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 282 DVERALKKAGWKVARRE 298 (315)
T ss_pred HHHHHHHHCCCEEEEEE
Confidence 67788888999988754
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-09 Score=93.62 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=94.4
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
.+.++.+++|+|||||.++...+..+ ..+|+++|.++++++.+++|++..+. +++.+..- +..+.+.+++
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~----~n~~vv~g-----~Ap~~L~~~~ 101 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV----DNLEVVEG-----DAPEALPDLP 101 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC----CcEEEEec-----cchHhhcCCC
Confidence 45588899999999999998888544 45999999999999999999999884 45555433 2333333222
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCC-eEEEE
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF-RLVDK 524 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~-~~~~~ 524 (564)
+||.|+.. ....++.+++++...| +++| ++++- -.+-++....++.+++.|+ ++.++
T Consensus 102 --~~daiFIG----Gg~~i~~ile~~~~~l-~~gg--------rlV~n-aitlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 102 --SPDAIFIG----GGGNIEEILEAAWERL-KPGG--------RLVAN-AITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred --CCCEEEEC----CCCCHHHHHHHHHHHc-CcCC--------eEEEE-eecHHHHHHHHHHHHHcCCceEEEE
Confidence 79988743 3478999999999999 9987 55543 3444445567899999999 55554
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=102.05 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=79.8
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+|.+|||+|||||-++..++.. +..+|+++|+|+.|++.+++.+..-+.. + +++..-|- +.+ ++++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~---~-i~fv~~dA------e~L-Pf~D~s 119 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ---N-VEFVVGDA------ENL-PFPDNS 119 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc---c-eEEEEech------hhC-CCCCCc
Confidence 7899999999999777776664 3569999999999999999987764432 1 44332222 222 578999
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
||+|.++=.+-+..+.+..++++.|+| +|+|
T Consensus 120 FD~vt~~fglrnv~d~~~aL~E~~RVl-KpgG 150 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALKEMYRVL-KPGG 150 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHHHHHHhh-cCCe
Confidence 999999999999999999999999999 9988
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=106.42 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=77.7
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
++.++......++.+|||||||+|.++..++... ..+|+++|+++.+++.++++.. ++.+...|-..
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~---------~~~~~~~d~~~--- 87 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP---------DCQFVEADIAS--- 87 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC---------CCeEEECchhc---
Confidence 4444444445578899999999998887777654 5699999999999999988742 12332222111
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+ ....+||+|+++.++.+..+...+++.+.++| +|+|
T Consensus 88 ---~--~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L-kpgG 124 (258)
T PRK01683 88 ---W--QPPQALDLIFANASLQWLPDHLELFPRLVSLL-APGG 124 (258)
T ss_pred ---c--CCCCCccEEEEccChhhCCCHHHHHHHHHHhc-CCCc
Confidence 1 12358999999999988888999999999999 9988
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-09 Score=104.34 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=101.1
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~ 435 (564)
.++.+..+.+.+..... ..+.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..++. .++.+..
T Consensus 69 p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~~~~ 143 (251)
T TIGR03534 69 PRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL----DNVTFLQ 143 (251)
T ss_pred CCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CeEEEEE
Confidence 34556666666655432 245699999999998887777654 45999999999999999999998776 3466666
Q ss_pred eecCCCccchhhhhhcCCCccEEEEeceeeCCC--------------------------ChHHHHHHHHHHhhccCCCCC
Q 008457 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------------------------AILPLFATAKELTASSNKSLR 489 (564)
Q Consensus 436 l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~l~~~~~~ll~~~~g~~~ 489 (564)
.|+.+. +..++||+|+++.+..... .+..+++.+.++| +++|
T Consensus 144 ~d~~~~--------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L-~~gG--- 211 (251)
T TIGR03534 144 SDWFEP--------LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLL-KPGG--- 211 (251)
T ss_pred Cchhcc--------CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhc-ccCC---
Confidence 655431 2346899998754322111 1246788999999 9988
Q ss_pred CCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 490 EDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 490 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+++.....+ ...+.+.+.++||+...+.
T Consensus 212 -----~~~~~~~~~~--~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 212 -----WLLLEIGYDQ--GEAVRALFEAAGFADVETR 240 (251)
T ss_pred -----EEEEEECccH--HHHHHHHHHhCCCCceEEE
Confidence 7776543332 2356777888999877765
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-09 Score=103.02 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=88.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++|+..|+.. .++.+..-|+.+. ++..+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~---~~i~~~~~D~~~~--------~~~~~ 189 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE---DRVTLIQSDLFAA--------LPGRK 189 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhhc--------cCCCC
Confidence 45689999999998888887754 469999999999999999999998864 4577776665321 23457
Q ss_pred ccEEEEeceeeCC--------------------------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh
Q 008457 455 FEVILGTDVSYIP--------------------------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP 508 (564)
Q Consensus 455 fD~Ii~~d~~y~~--------------------------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~ 508 (564)
||+|+++.. |.. ..+..+++.+.++| +++| .+++-..... .
T Consensus 190 fD~Iv~NPP-y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L-~~gG--------~l~~e~g~~~---~ 256 (284)
T TIGR03533 190 YDLIVSNPP-YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHL-NENG--------VLVVEVGNSM---E 256 (284)
T ss_pred ccEEEECCC-CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhc-CCCC--------EEEEEECcCH---H
Confidence 999997633 211 12356788889999 9988 7766544322 3
Q ss_pred HHHHHHHHcCCeEE
Q 008457 509 SMLSAATQCGFRLV 522 (564)
Q Consensus 509 ~~~~~~~~~g~~~~ 522 (564)
.+.+.+...||.-.
T Consensus 257 ~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 257 ALEEAYPDVPFTWL 270 (284)
T ss_pred HHHHHHHhCCCcee
Confidence 56666667776543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.7e-10 Score=106.63 Aligned_cols=110 Identities=14% Similarity=0.193 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||||||+|.++..+++..|+.+++++|+++++++.|++.+... ..+++++.+|....-. . ..++||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~--~-~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA--V-HRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH--h-CCCCCCEEE
Confidence 4678999999999999999999989999999999999999999986533 3678999999753211 1 235899999
Q ss_pred Ecccc-cCCCh-hHHHHHHHHHHhccCCCeEEEEEec
Q 008457 152 MVFVL-SAVSP-EKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 152 ~~~vl-~~~~~-~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+...- ...+. -....+++++.+.|+|||++++..+
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 85311 11221 1236899999999999999998644
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-09 Score=108.66 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=81.1
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
...+++.+...+.++.+|||||||+|.++..++...+.+|+++|+|+++++.+++++. +. .+.+...|+.+
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-----~v~~~~~D~~~-- 224 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-----PVEIRLQDYRD-- 224 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-----eEEEEECchhh--
Confidence 3445555555566889999999999988887777666799999999999999999873 21 24444444421
Q ss_pred cchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
+ +++||+|++..++.+. ..++.+++.+.++| +|+|
T Consensus 225 -------l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~L-kpGG 261 (383)
T PRK11705 225 -------L-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCL-KPDG 261 (383)
T ss_pred -------c-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHc-CCCc
Confidence 1 3589999999888775 45689999999999 9988
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-09 Score=104.00 Aligned_cols=125 Identities=17% Similarity=0.135 Sum_probs=87.3
Q ss_pred CeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 378 KKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
.+|||+|||+|.++..++.... .+|+++|+|+.+++.+++|+..++.. +++.+...||.+. +...+||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~---~~v~~~~~d~~~~--------~~~~~fD 184 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE---HRVEFIQSNLFEP--------LAGQKID 184 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhcc--------CcCCCcc
Confidence 6899999999988887776553 69999999999999999999988763 4577777776532 2234799
Q ss_pred EEEEeceee--------------CC-----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHH
Q 008457 457 VILGTDVSY--------------IP-----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML 511 (564)
Q Consensus 457 ~Ii~~d~~y--------------~~-----------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~ 511 (564)
+|+++.... .+ ..+..+++.+.++| +++| .+++.....+.. .+.
T Consensus 185 lIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L-~~gG--------~l~~e~g~~q~~--~~~ 253 (284)
T TIGR00536 185 IIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL-KPNG--------FLVCEIGNWQQK--SLK 253 (284)
T ss_pred EEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc-cCCC--------EEEEEECccHHH--HHH
Confidence 999753211 11 13556788888999 9987 766655443322 344
Q ss_pred HHHH-HcCCeEEEE
Q 008457 512 SAAT-QCGFRLVDK 524 (564)
Q Consensus 512 ~~~~-~~g~~~~~~ 524 (564)
+.+. +.||.-.++
T Consensus 254 ~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 254 ELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHhcCCCceeEE
Confidence 4454 357765444
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-09 Score=112.13 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=90.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.+++|+..+++. +++.+...||.+. +..++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~---~~v~~~~~D~~~~--------~~~~~ 206 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT---DRIQIIHSNWFEN--------IEKQK 206 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc---cceeeeecchhhh--------CcCCC
Confidence 3468999999999888777655 4569999999999999999999988764 4566666665321 23458
Q ss_pred ccEEEEeceeeCC--------------------------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh
Q 008457 455 FEVILGTDVSYIP--------------------------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP 508 (564)
Q Consensus 455 fD~Ii~~d~~y~~--------------------------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~ 508 (564)
||+|+++...... ..+..+++.+.++| +|+| .+++.....+ ..
T Consensus 207 fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L-~~gG--------~l~lEig~~q--~~ 275 (506)
T PRK01544 207 FDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFL-KPNG--------KIILEIGFKQ--EE 275 (506)
T ss_pred ccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhc-cCCC--------EEEEEECCch--HH
Confidence 9999975422110 12345677888899 9988 7776543332 33
Q ss_pred HHHHHHHHcCCeEEEEc
Q 008457 509 SMLSAATQCGFRLVDKW 525 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~ 525 (564)
.+.+.+.+.||...++.
T Consensus 276 ~v~~~~~~~g~~~~~~~ 292 (506)
T PRK01544 276 AVTQIFLDHGYNIESVY 292 (506)
T ss_pred HHHHHHHhcCCCceEEE
Confidence 56677778899876654
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-10 Score=103.62 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=83.4
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCccccc
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLS 139 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~ 139 (564)
.+...+.+.+...++.+|||||||+|+.+..|+.. .+...|+++|..+.+.+.|+++....+ .++.++++|.... .+
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g-~~ 137 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG-WP 137 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT-TG
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc-cc
Confidence 44455667777899999999999999999999887 445689999999999999999876544 4899999997532 21
Q ss_pred CCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 140 RQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 140 ~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
....||.|++......+| ..+.+.|++||++++-.
T Consensus 138 ---~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 138 ---EEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp ---GG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEE
T ss_pred ---cCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEE
Confidence 346899999998887664 22667789999999853
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=103.67 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=88.2
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCe-eEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRV-STFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i-~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.++...+.+|||+|||.|.++..+++.+|..+++.+|.+..+++.|+.+...+.... .+...|+.. +..+ +
T Consensus 151 l~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-----~v~~-k 224 (300)
T COG2813 151 LETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-----PVEG-K 224 (300)
T ss_pred HHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-----cccc-c
Confidence 45555566679999999999999999999999999999999999999999877554333 455565532 3344 9
Q ss_pred eeEEEEcccccCCC---hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 147 IDIVTMVFVLSAVS---PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 147 fD~V~~~~vl~~~~---~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
||+|+||=-+|--- ..--.+++.+..+.|++||.|.+.-
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 99999988877331 2233489999999999999998863
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=105.15 Aligned_cols=171 Identities=19% Similarity=0.226 Sum_probs=112.6
Q ss_pred EEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEc
Q 008457 327 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 406 (564)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD 406 (564)
...+...|..+.|....+ ..||+. ..-+..=.|+..+ .++++||+|-|-||+++..++..++.+|+.+|
T Consensus 85 ~~~v~E~gl~f~v~l~~g------qktGlF--lDqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD 153 (286)
T PF10672_consen 85 FFTVEENGLKFRVDLTDG------QKTGLF--LDQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVD 153 (286)
T ss_dssp EEEEEETTEEEEEESSSS------SSTSS---GGGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEE
T ss_pred ceEEEECCEEEEEEcCCC------CcceEc--HHHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEe
Confidence 345667887777764333 467742 2222222333332 37899999999999999998888888999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh-cCCCccEEEEeceeeCC------CChHHHHHHHHH
Q 008457 407 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-NNEGFEVILGTDVSYIP------EAILPLFATAKE 479 (564)
Q Consensus 407 ~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~-~~~~fD~Ii~~d~~y~~------~~~~~l~~~~~~ 479 (564)
.|..+++.+++|+.+|++.. .++++...|. ++.+..+ ..++||+||.-.+-|-. .++..|+..+.+
T Consensus 154 ~S~~al~~a~~N~~lNg~~~--~~~~~~~~Dv-----f~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ 226 (286)
T PF10672_consen 154 SSKRALEWAKENAALNGLDL--DRHRFIQGDV-----FKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMK 226 (286)
T ss_dssp S-HHHHHHHHHHHHHTT-CC--TCEEEEES-H-----HHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCc--cceEEEecCH-----HHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999853 4555554433 2222221 24699999965554432 267788999999
Q ss_pred HhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEE
Q 008457 480 LTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 480 ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
+| +|+| .+++|......+.+.|++.+.+.+-++..+
T Consensus 227 ll-~~gG--------~l~~~scs~~i~~~~l~~~~~~~a~~~~~~ 262 (286)
T PF10672_consen 227 LL-KPGG--------LLLTCSCSHHISPDFLLEAVAEAAREVEFI 262 (286)
T ss_dssp TE-EEEE--------EEEEEE--TTS-HHHHHHHHHHHHHHCEEE
T ss_pred hc-CCCC--------EEEEEcCCcccCHHHHHHHHHHhCccceEe
Confidence 99 9988 888888888888877888776655444444
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.7e-09 Score=97.39 Aligned_cols=135 Identities=20% Similarity=0.198 Sum_probs=87.2
Q ss_pred CCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 372 PTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 372 ~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
..+.++.+|||+|||+|.++..++... ..+|+++|.++++++.+.+++... .++.+..-|-... .....+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~------~nv~~i~~D~~~~---~~~~~l 138 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER------KNIIPILADARKP---ERYAHV 138 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc------CCcEEEECCCCCc---chhhhc
Confidence 455688899999999998887777654 358999999999999887776532 1233332222111 000112
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-----h---hHHHHHHHHcCCeEE
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-----E---PSMLSAATQCGFRLV 522 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~-----~---~~~~~~~~~~g~~~~ 522 (564)
..+||+|+. |+- ++.....+++.+.++| +|+| .++++.+.|..+ . ....+.++++||++.
T Consensus 139 -~~~~D~i~~-d~~-~p~~~~~~L~~~~r~L-KpGG--------~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 139 -VEKVDVIYQ-DVA-QPNQAEIAIDNAEFFL-KDGG--------YLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred -cccCCEEEE-CCC-ChhHHHHHHHHHHHhc-CCCc--------EEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 246898873 321 1222345689999999 9988 777754433221 1 134588888999999
Q ss_pred EEcCC
Q 008457 523 DKWPS 527 (564)
Q Consensus 523 ~~~~~ 527 (564)
+....
T Consensus 207 ~~~~l 211 (226)
T PRK04266 207 EVVDL 211 (226)
T ss_pred EEEcC
Confidence 98754
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.8e-09 Score=98.69 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=76.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
++.+|||+|||+|.++..++.... .+++++|+++.+++.++++.. . ..++.+...+..+. +...+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~---~~~i~~~~~d~~~~-------~~~~~ 105 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L---PLNIEFIQADAEAL-------PFEDN 105 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c---CCCceEEecchhcC-------CCCCC
Confidence 788999999999988777776665 489999999999999998875 1 13455554444322 12346
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+||+|+++..+.+......+++.+.++| +|+|
T Consensus 106 ~~D~i~~~~~~~~~~~~~~~l~~~~~~L-~~gG 137 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTDIQKALREMYRVL-KPGG 137 (223)
T ss_pred cEEEEEEeeeeCCcccHHHHHHHHHHHc-CCCc
Confidence 8999999988888889999999999999 9988
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-09 Score=106.27 Aligned_cols=96 Identities=24% Similarity=0.234 Sum_probs=75.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++++|||+|||+|..+..++..+ .+|+++|.|+.+++.+++|+..+++ .+.+...|.... . .+++|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l-----~v~~~~~D~~~~-------~-~~~~f 185 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENL-----NIRTGLYDINSA-------S-IQEEY 185 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEechhcc-------c-ccCCc
Confidence 55699999999997777776654 6899999999999999999988765 244444443321 1 14689
Q ss_pred cEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
|+|++..++++. +..+.+++.+.++| +|+|
T Consensus 186 D~I~~~~vl~~l~~~~~~~~l~~~~~~L-kpgG 217 (287)
T PRK12335 186 DFILSTVVLMFLNRERIPAIIKNMQEHT-NPGG 217 (287)
T ss_pred cEEEEcchhhhCCHHHHHHHHHHHHHhc-CCCc
Confidence 999999887753 47889999999999 9988
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7e-09 Score=108.23 Aligned_cols=118 Identities=13% Similarity=0.127 Sum_probs=88.2
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++....+ .++.+++.|+....-..+...++|
T Consensus 247 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 247 LLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred HhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccC
Confidence 4555788999999999999999998874 35699999999999999998876544 468888898864321111235789
Q ss_pred eEEEEc------ccccCCCh-------hH-------HHHHHHHHHhccCCCeEEEEEecC
Q 008457 148 DIVTMV------FVLSAVSP-------EK-------MSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 148 D~V~~~------~vl~~~~~-------~~-------~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
|.|++. .++.+-+. .+ ...+|.++.++|||||+++.++-.
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 999973 23443321 11 468899999999999999887544
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-09 Score=101.96 Aligned_cols=122 Identities=24% Similarity=0.386 Sum_probs=91.7
Q ss_pred eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEccc-
Q 008457 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMVFV- 155 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~v- 155 (564)
+|||+|||+|..+..++...|..+|+|+|+|+.+++.|+++....+ .++.++..|+.. ++. ++||+|++|=-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-----~~~-~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-----PLR-GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-----ccC-CceeEEEeCCCC
Confidence 8999999999999999999888899999999999999999876555 555566666543 223 48999999531
Q ss_pred -c---cCCC------------------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCC
Q 008457 156 -L---SAVS------------------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDG 213 (564)
Q Consensus 156 -l---~~~~------------------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (564)
- .+.. .+-...++.++.+.|+|||.+++..-.
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-------------------------- 240 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-------------------------- 240 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC--------------------------
Confidence 1 1110 124567888899999999998875211
Q ss_pred ceeeccCHHHHHHHHHhCC-CcEE
Q 008457 214 TRAFYFSNDFLTSLFKENG-FDVE 236 (564)
Q Consensus 214 ~~~~~~~~~~l~~~l~~aG-f~~~ 236 (564)
-..+.+.++|.+.| |..+
T Consensus 241 -----~q~~~v~~~~~~~~~~~~v 259 (280)
T COG2890 241 -----TQGEAVKALFEDTGFFEIV 259 (280)
T ss_pred -----CcHHHHHHHHHhcCCceEE
Confidence 14678889999999 4433
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-09 Score=96.00 Aligned_cols=114 Identities=16% Similarity=0.328 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.....|.|+|||.+.++. .. ..+|+.+|+-+ .+-+++.+|+... |+++++.|+++++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a--------------~~~~V~~cDm~~v----Pl~d~svDvaV~C 235 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA--------------VNERVIACDMRNV----PLEDESVDVAVFC 235 (325)
T ss_pred cCceEEEecccchhhhhh---cc--ccceeeeeeec--------------CCCceeeccccCC----cCccCcccEEEee
Confidence 677889999999998865 22 35699999843 2346778998753 6789999999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.+|+-. ++..++++++|+|+|||.++|.+.... |-+...+...+...||
T Consensus 236 LSLMgt---n~~df~kEa~RiLk~gG~l~IAEv~SR----------------------------f~dv~~f~r~l~~lGF 284 (325)
T KOG3045|consen 236 LSLMGT---NLADFIKEANRILKPGGLLYIAEVKSR----------------------------FSDVKGFVRALTKLGF 284 (325)
T ss_pred Hhhhcc---cHHHHHHHHHHHhccCceEEEEehhhh----------------------------cccHHHHHHHHHHcCC
Confidence 888765 788899999999999999999865421 1256678899999999
Q ss_pred cEEEeeee
Q 008457 234 DVEELGLC 241 (564)
Q Consensus 234 ~~~~~~~~ 241 (564)
.+......
T Consensus 285 ~~~~~d~~ 292 (325)
T KOG3045|consen 285 DVKHKDVS 292 (325)
T ss_pred eeeehhhh
Confidence 98766554
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-09 Score=97.21 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=76.6
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc-C
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-N 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~-~ 452 (564)
...+.+||||+||+|.++..++.+++++|+++|.++.+++.+++|++.|+.. .++.+...|. ...+..+. .
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~---~~~~~~~~D~-----~~~l~~~~~~ 118 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG---EQAEVVRNSA-----LRALKFLAKK 118 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc---ccEEEEehhH-----HHHHHHhhcc
Confidence 3578999999999999999999999889999999999999999999999864 3445443332 12222221 2
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHH--HhhccCC
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKE--LTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~--ll~~~~g 486 (564)
.++|.||..|..|.....+.++..+.. +| +++|
T Consensus 119 ~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l-~~~~ 153 (189)
T TIGR00095 119 PTFDNVIYLDPPFFNGALQALLELCENNWIL-EDTV 153 (189)
T ss_pred CCCceEEEECcCCCCCcHHHHHHHHHHCCCC-CCCe
Confidence 344455668999998888888776655 45 5544
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.2e-09 Score=101.19 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=99.1
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
.+.+..+.+++.......++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+. +.. ..++.+...
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~---~~~i~~~~~ 165 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL---GARVEFLQG 165 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC---CCcEEEEEc
Confidence 45556677777654444567899999999998877777654 4699999999999999999998 222 145777777
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCC--------------------------CChHHHHHHHHHHhhccCCCCCC
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIP--------------------------EAILPLFATAKELTASSNKSLRE 490 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--------------------------~~~~~l~~~~~~ll~~~~g~~~~ 490 (564)
||... ...++||+|+++...... ..+..+++.+.++| +++|
T Consensus 166 d~~~~--------~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L-k~gG---- 232 (275)
T PRK09328 166 DWFEP--------LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL-KPGG---- 232 (275)
T ss_pred cccCc--------CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc-ccCC----
Confidence 76432 124689999975332111 12456778888999 9988
Q ss_pred CCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEE
Q 008457 491 DQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 491 ~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
.+++...... ...+.+.+.+.||.-.++
T Consensus 233 ----~l~~e~g~~~--~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 233 ----WLLLEIGYDQ--GEAVRALLAAAGFADVET 260 (275)
T ss_pred ----EEEEEECchH--HHHHHHHHHhCCCceeEE
Confidence 7766443322 235667777889975544
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-11 Score=97.60 Aligned_cols=96 Identities=17% Similarity=0.251 Sum_probs=60.0
Q ss_pred EEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEE
Q 008457 381 LELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVIL 459 (564)
Q Consensus 381 LelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii 459 (564)
||+|||+|.+...++.. ...+++++|+|+.+++.+++++...... ....+.+...+... ....++||+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~fD~V~ 71 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND------NFERLRFDVLDLFD---YDPPESFDLVV 71 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS------CCC----SEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc------ceeEEEeecCChhh---cccccccceeh
Confidence 79999999887777765 3569999999999998888777765432 22223333222211 11225999999
Q ss_pred EeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 460 GTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 460 ~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
++.++++.++...+++.+.++| +|+|
T Consensus 72 ~~~vl~~l~~~~~~l~~~~~~L-~pgG 97 (99)
T PF08242_consen 72 ASNVLHHLEDIEAVLRNIYRLL-KPGG 97 (99)
T ss_dssp EE-TTS--S-HHHHHHHHTTT--TSS-
T ss_pred hhhhHhhhhhHHHHHHHHHHHc-CCCC
Confidence 9999999999999999999999 9988
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.1e-10 Score=99.78 Aligned_cols=154 Identities=14% Similarity=0.252 Sum_probs=98.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC-----------------------------
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET----------------------------- 124 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~----------------------------- 124 (564)
..+..+|||||.+|.++..+++.+....+.|+|+++..++.|++..+....
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 568899999999999999999998677899999999999999986542110
Q ss_pred -------CeeEEEecCCc--ccccCCCCCCceeEEEEcccccCC----ChhHHHHHHHHHHhccCCCeEEEEEecCCCch
Q 008457 125 -------RVSTFVCDLIS--DDLSRQISPSSIDIVTMVFVLSAV----SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL 191 (564)
Q Consensus 125 -------~i~~~~~d~~~--~~~~~~~~~~~fD~V~~~~vl~~~----~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~ 191 (564)
++.|...+... .++ ..+....||+|+|..+-.|+ .++.+..++++++++|.|||+|++. +.+-..
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~df-l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE-PQpWks 214 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDF-LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE-PQPWKS 214 (288)
T ss_pred ccccCCcchhcccccEEEecchh-hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc-CCchHH
Confidence 11111111000 000 01245689999997665443 3688999999999999999999885 222111
Q ss_pred hhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC--CCcEEE
Q 008457 192 AQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN--GFDVEE 237 (564)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a--Gf~~~~ 237 (564)
..... .....+..+ -...++.++....++.+. ||+..+
T Consensus 215 Y~kaa-r~~e~~~~n-------y~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 215 YKKAA-RRSEKLAAN-------YFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred HHHHH-HHHHHhhcC-------ccceecCHHHHHhhhhhhhhheeeec
Confidence 11110 111111111 122356788888888776 665543
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=106.79 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=95.7
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
.|+..+.......++.+|||+|||+|.+...++. .+.+|+++|+++.+++.++.|+..++.. .+.+..-|..+.
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~----~i~~~~~D~~~l- 242 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIE----DFFVKRGDATKL- 242 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCC----CCeEEecchhcC-
Confidence 4555555444455788999999999987766554 4568999999999999999999987764 244443333221
Q ss_pred cchhhhhhcCCCccEEEEeceeeCC----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHH
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIP----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLS 512 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~----------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~ 512 (564)
++..++||+|++ |..|.. .....+++.+.++| +|+| .+++..+.+. .+.+
T Consensus 243 ------~~~~~~~D~Iv~-dPPyg~~~~~~~~~~~~l~~~~l~~~~r~L-k~gG--------~lv~~~~~~~----~~~~ 302 (329)
T TIGR01177 243 ------PLSSESVDAIAT-DPPYGRSTTAAGDGLESLYERSLEEFHEVL-KSEG--------WIVYAVPTRI----DLES 302 (329)
T ss_pred ------CcccCCCCEEEE-CCCCcCcccccCCchHHHHHHHHHHHHHHc-cCCc--------EEEEEEcCCC----CHHH
Confidence 223568999885 455532 12578999999999 9988 6666655432 3345
Q ss_pred HHHHcCCeEEEEcC
Q 008457 513 AATQCGFRLVDKWP 526 (564)
Q Consensus 513 ~~~~~g~~~~~~~~ 526 (564)
.++++|| +...+.
T Consensus 303 ~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 303 LAEDAFR-VVKRFE 315 (329)
T ss_pred HHhhcCc-chheee
Confidence 6678899 877764
|
This family is found exclusively in the Archaea. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=104.68 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=72.7
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++.+|||||||+|.++..++... ..+|+++|+|+.+++.++++ + +.+...|. ..+ ..
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~-------~~~~~~d~------~~~--~~ 86 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G-------VDARTGDV------RDW--KP 86 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C-------CcEEEcCh------hhC--CC
Confidence 34577899999999998887777664 46899999999999988763 1 22322221 111 12
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.++||+|+++.++.+..+...+++.+.++| +|+|
T Consensus 87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L-kpgG 120 (255)
T PRK14103 87 KPDTDVVVSNAALQWVPEHADLLVRWVDEL-APGS 120 (255)
T ss_pred CCCceEEEEehhhhhCCCHHHHHHHHHHhC-CCCc
Confidence 468999999999999889999999999999 9988
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-09 Score=108.28 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=86.7
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeE--EEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVST--FVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~--~~~d~~~~~~~~~~~~~~ 146 (564)
..+.+.++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++....+..+.+ ..+|...... ..+.++
T Consensus 232 ~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~--~~~~~~ 309 (426)
T TIGR00563 232 TWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ--WAENEQ 309 (426)
T ss_pred HHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc--cccccc
Confidence 345667889999999999999999998876679999999999999999887655443444 4445432111 114578
Q ss_pred eeEEEEc------ccccCCCh-------h-------HHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 147 IDIVTMV------FVLSAVSP-------E-------KMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 147 fD~V~~~------~vl~~~~~-------~-------~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
||.|++. .++++.|. + ....+|.++.++|||||.+++++-..
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999962 24444331 1 24679999999999999999987654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=105.00 Aligned_cols=129 Identities=15% Similarity=0.212 Sum_probs=90.9
Q ss_pred hccccccccchhHHHHhhhc-cCCCCCeEEEEcCCccccHHHHH----HhCC----CcEEEEEeCChHHHHHHHhccc--
Q 008457 52 HQDRFFKDRHYLDKEWGRYF-SGAGRKDVLEVGCGAGNTIFPLI----AAYP----DVFVYACDFSPRAVNLVMTHKD-- 120 (564)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~VLDiGcG~G~~~~~l~----~~~~----~~~v~~iD~s~~~l~~a~~~~~-- 120 (564)
+...||++...+.. +.+.+ ...+..+|+..||++|.-...++ +..+ ..+|+|+|+|+.+++.|++-.-
T Consensus 92 neT~FFRd~~~f~~-L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~ 170 (287)
T PRK10611 92 NLTAFFREAHHFPI-LAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQ 170 (287)
T ss_pred CCCCccCCcHHHHH-HHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCH
Confidence 34456666554322 22222 22345899999999996554443 3221 4689999999999999987310
Q ss_pred ----------------c--------------cCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHH
Q 008457 121 ----------------F--------------TETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQN 170 (564)
Q Consensus 121 ----------------~--------------~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~ 170 (564)
. ....|.|...|+..... + +.+.||+|+|.+++.|++++....++.+
T Consensus 171 ~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~--~-~~~~fD~I~cRNvliyF~~~~~~~vl~~ 247 (287)
T PRK10611 171 EELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQW--A-VPGPFDAIFCRNVMIYFDKTTQERILRR 247 (287)
T ss_pred HHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCC--c-cCCCcceeeHhhHHhcCCHHHHHHHHHH
Confidence 0 01346777787764322 1 2578999999999999998899999999
Q ss_pred HHhccCCCeEEEEE
Q 008457 171 IKKVLKPTGYVLFR 184 (564)
Q Consensus 171 ~~r~LkpgG~lii~ 184 (564)
+.+.|+|||+|++.
T Consensus 248 l~~~L~pgG~L~lG 261 (287)
T PRK10611 248 FVPLLKPDGLLFAG 261 (287)
T ss_pred HHHHhCCCcEEEEe
Confidence 99999999998874
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.2e-09 Score=100.54 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=80.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
++.+|||||||+|.+...++.. ...+|+++|+++.|++.+++++...+.. .++.+...|+.+. +.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~---~~v~~~~~d~~~~---------~~ 120 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE---IPVEILCNDIRHV---------EI 120 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEECChhhC---------CC
Confidence 6779999999999777666654 3568999999999999999998764432 3466665555432 22
Q ss_pred CCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 453 EGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
..+|+|+++.++.+. .....+++.+.+.| +|+| .++++...+
T Consensus 121 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~L-kpgG--------~l~i~d~~~ 164 (239)
T TIGR00740 121 KNASMVILNFTLQFLPPEDRIALLTKIYEGL-NPNG--------VLVLSEKFR 164 (239)
T ss_pred CCCCEEeeecchhhCCHHHHHHHHHHHHHhc-CCCe--------EEEEeeccc
Confidence 468999887776553 34678999999999 9988 888876544
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-09 Score=97.55 Aligned_cols=108 Identities=20% Similarity=0.194 Sum_probs=89.6
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCC
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
..+...++.+|||.|.|+|.++..|++. +|..+|+..|+.++.++.|+++....+ +++.+..+|+..... ..
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-----~~ 162 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-----EE 162 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-----cc
Confidence 3445589999999999999999999975 677899999999999999999876533 458888899875432 34
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
.||+|+. -+| ++.+++..++++|+|||.+++..+..
T Consensus 163 ~vDav~L-----Dmp--~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 163 DVDAVFL-----DLP--DPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ccCEEEE-----cCC--ChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 8999998 454 78899999999999999999876553
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=106.05 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc------cCCCeeEEEecCCcccccCCCCCCce
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF------TETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~------~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.++.+||+||||+|..+..+++..+..+|+++|+++.+++.|++.+.. ...+++++.+|....- .-..++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l---~~~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV---AETENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH---hhCCCcc
Confidence 567899999999999999998764456899999999999999987642 2467899999975421 1145789
Q ss_pred eEEEEcccccCCChhH--HHHHHHHHHhccCCCeEEEEE
Q 008457 148 DIVTMVFVLSAVSPEK--MSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~--~~~~l~~~~r~LkpgG~lii~ 184 (564)
|+|++...-.+.+... ...+++.+++.|+|||++++.
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999965433322121 367899999999999999874
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.7e-09 Score=95.41 Aligned_cols=129 Identities=9% Similarity=0.021 Sum_probs=84.6
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++.+|||+|||+|.++..++.. ...+|+++|.++++++.+++|+..++. .++.+...|..+ .+..+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~----~~v~~~~~d~~~-----~~~~~- 106 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV----KNVEVIEGSAPE-----CLAQL- 106 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCeEEEECchHH-----HHhhC-
Confidence 4457789999999999887777654 346999999999999999999998775 245554433211 11111
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHH---HHcCCeEEEEc
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA---TQCGFRLVDKW 525 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~---~~~g~~~~~~~ 525 (564)
...+|.|+. ........+++.+.++| +|+| .+++...... ......+.+ ...++++.++.
T Consensus 107 ~~~~d~v~~----~~~~~~~~~l~~~~~~L-kpgG--------~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 107 APAPDRVCI----EGGRPIKEILQAVWQYL-KPGG--------RLVATASSLE-GLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred CCCCCEEEE----ECCcCHHHHHHHHHHhc-CCCe--------EEEEEeecHH-HHHHHHHHHHhcCCCCceEEEEE
Confidence 224566543 22346789999999999 9988 6666654322 111233333 34577777663
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-09 Score=102.36 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
++.+|||||||+|.++..++.. ...+|+++|+|+.|++.+++|+..++.. .++.+..-+..+ ++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~---~~v~~~~~d~~~---------~~~ 123 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP---TPVDVIEGDIRD---------IAI 123 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEeCChhh---------CCC
Confidence 6789999999999776666542 3569999999999999999999876653 356665444332 123
Q ss_pred CCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 453 EGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
..+|+|+++-++.+. .....+++.+.+.| +|+| .++++...+
T Consensus 124 ~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~L-kpGG--------~l~l~e~~~ 167 (247)
T PRK15451 124 ENASMVVLNFTLQFLEPSERQALLDKIYQGL-NPGG--------ALVLSEKFS 167 (247)
T ss_pred CCCCEEehhhHHHhCCHHHHHHHHHHHHHhc-CCCC--------EEEEEEecC
Confidence 468999987666543 34578999999999 9988 888876543
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=99.15 Aligned_cols=107 Identities=22% Similarity=0.347 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCCccccHHHH----HHh----CC-CcEEEEEeCChHHHHHHHhc------------------c-ccc---
Q 008457 74 AGRKDVLEVGCGAGNTIFPL----IAA----YP-DVFVYACDFSPRAVNLVMTH------------------K-DFT--- 122 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l----~~~----~~-~~~v~~iD~s~~~l~~a~~~------------------~-~~~--- 122 (564)
.+..+|+..||++|.-...| .+. .+ ..+++|+|+|+.+++.|++- + ...
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 36789999999999655443 331 11 47999999999999999861 0 000
Q ss_pred -------CCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 123 -------ETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 123 -------~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
...|.|...|+.+. +.+.+.||+|+|.+||.++.++....+++.+++.|+|||+|++.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~----~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDP----DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S----------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eeEChHHcCceEEEecccCCC----CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 13588888888761 22567999999999999999899999999999999999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-08 Score=99.37 Aligned_cols=121 Identities=15% Similarity=0.131 Sum_probs=85.0
Q ss_pred CeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 378 KKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++|+..++.. +++.+...|+.+. ++.++||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~---~~i~~~~~D~~~~--------l~~~~fD 203 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE---DRVTLIESDLFAA--------LPGRRYD 203 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---CcEEEEECchhhh--------CCCCCcc
Confidence 689999999998888777664 469999999999999999999998764 4577766665321 2345899
Q ss_pred EEEEeceee--------------CC-----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHH
Q 008457 457 VILGTDVSY--------------IP-----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML 511 (564)
Q Consensus 457 ~Ii~~d~~y--------------~~-----------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~ 511 (564)
+|+++.+.. .+ ..+..+++.+.++| +|+| .+++-.... ...+.
T Consensus 204 lIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L-~pgG--------~l~~E~g~~---~~~~~ 271 (307)
T PRK11805 204 LIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYL-TEDG--------VLVVEVGNS---RVHLE 271 (307)
T ss_pred EEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhc-CCCC--------EEEEEECcC---HHHHH
Confidence 999763211 11 12357788999999 9988 666643332 22355
Q ss_pred HHHHHcCCeE
Q 008457 512 SAATQCGFRL 521 (564)
Q Consensus 512 ~~~~~~g~~~ 521 (564)
+.+...|+.-
T Consensus 272 ~~~~~~~~~~ 281 (307)
T PRK11805 272 EAYPDVPFTW 281 (307)
T ss_pred HHHhhCCCEE
Confidence 5555556543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-09 Score=105.81 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=81.6
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~ 142 (564)
..+.+.+...++.+|||+|||+|.++..+++..+ ..+|+++|+++.+++.|+++....+ .++.++++|..... .
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~----~ 145 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV----P 145 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc----c
Confidence 3444555557889999999999999999998753 3579999999999999998765433 46888888875321 1
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
..++||+|++...+.+++ ..+.+.|+|||.+++..
T Consensus 146 ~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 EFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 235799999976655442 24677899999998854
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.3e-09 Score=96.75 Aligned_cols=112 Identities=15% Similarity=0.076 Sum_probs=78.1
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
..++.+.....++.+|||+|||+|.++..++... ..+|+++|.++++++.+++|+..++.. +++.+...|..+.
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~---~~v~~~~~d~~~~- 136 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW---GVVEVYHGDGKRG- 136 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEECCcccC-
Confidence 4444444445577899999999997776666543 358999999999999999999987753 3455555443321
Q ss_pred cchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
. ....+||+|++..... .+.+.+.+.| +|+| .+++...
T Consensus 137 -~-----~~~~~fD~Ii~~~~~~------~~~~~l~~~L-~~gG--------~lvi~~~ 174 (205)
T PRK13944 137 -L-----EKHAPFDAIIVTAAAS------TIPSALVRQL-KDGG--------VLVIPVE 174 (205)
T ss_pred -C-----ccCCCccEEEEccCcc------hhhHHHHHhc-CcCc--------EEEEEEc
Confidence 1 1235899999775543 2335778899 9988 7766543
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=103.87 Aligned_cols=150 Identities=20% Similarity=0.295 Sum_probs=104.8
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEccc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFV 155 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~v 155 (564)
-...+|+|.|.|+.+..+...+|. +-+++++...+..+..... ..|+.+.+|..++ . |. -|+|++.++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~-~----P~--~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQD-T----PK--GDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc---CCcceeccccccc-C----CC--cCeEEEEee
Confidence 488999999999999999998877 6667766666666655543 2388888888765 4 33 369999999
Q ss_pred ccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCc-hhhhhh-cccccccccceeec-CCCceeeccCHHHHHHHHHhCC
Q 008457 156 LSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD-LAQERL-TGKDQKISENFYVR-GDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 156 l~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~aG 232 (564)
|||+++++..++|++++..|+|||.+++.+...+. ...... .............. ..|.. .+..+++.++.++|
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gke---rt~~e~q~l~~~~g 322 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKE---RTLKEFQALLPEEG 322 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcccee---ccHHHHHhcchhhc
Confidence 99999999999999999999999999998875442 111110 10000000000011 11222 37899999999999
Q ss_pred CcEEEeee
Q 008457 233 FDVEELGL 240 (564)
Q Consensus 233 f~~~~~~~ 240 (564)
|.+..+..
T Consensus 323 F~~~~~~~ 330 (342)
T KOG3178|consen 323 FPVCMVAL 330 (342)
T ss_pred CceeEEEe
Confidence 98876544
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-09 Score=99.79 Aligned_cols=133 Identities=20% Similarity=0.244 Sum_probs=98.1
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~ 144 (564)
.-.+...||.+|||.|.|+|.++..|++. +|.++|+..|+.++.++.|++.+...+ .++.+...|+....+...+ +
T Consensus 33 ~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~ 111 (247)
T PF08704_consen 33 LMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL-E 111 (247)
T ss_dssp HHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--T
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc-c
Confidence 33455689999999999999999999986 788999999999999999999876544 5799999999765552222 4
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhcc-CCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVL-KPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF 223 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~L-kpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (564)
..+|.|++ -+| ++..++..+.+.| ||||.+.+..+... ....
T Consensus 112 ~~~DavfL-----Dlp--~Pw~~i~~~~~~L~~~gG~i~~fsP~ie------------------------------Qv~~ 154 (247)
T PF08704_consen 112 SDFDAVFL-----DLP--DPWEAIPHAKRALKKPGGRICCFSPCIE------------------------------QVQK 154 (247)
T ss_dssp TSEEEEEE-----ESS--SGGGGHHHHHHHE-EEEEEEEEEESSHH------------------------------HHHH
T ss_pred CcccEEEE-----eCC--CHHHHHHHHHHHHhcCCceEEEECCCHH------------------------------HHHH
Confidence 68999998 443 5677899999999 89999998655431 1345
Q ss_pred HHHHHHhCCCcEEEe
Q 008457 224 LTSLFKENGFDVEEL 238 (564)
Q Consensus 224 l~~~l~~aGf~~~~~ 238 (564)
....|++.||..+++
T Consensus 155 ~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 155 TVEALREHGFTDIET 169 (247)
T ss_dssp HHHHHHHTTEEEEEE
T ss_pred HHHHHHHCCCeeeEE
Confidence 557778899977664
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.5e-09 Score=98.96 Aligned_cols=128 Identities=19% Similarity=0.231 Sum_probs=85.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++...++.. .++.+...|+.. ..++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~~----------~~~~ 127 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLA---GNITFEVGDLES----------LLGR 127 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCc---cCcEEEEcCchh----------ccCC
Confidence 467899999999997777776654 46999999999999999998776542 345555554321 2468
Q ss_pred ccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc------------------------CChh
Q 008457 455 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------------------VDEP 508 (564)
Q Consensus 455 fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~------------------------~~~~ 508 (564)
||+|++.+++.+. .....+++.+.+++ ++ .+++++..+. .+..
T Consensus 128 fD~v~~~~~l~~~~~~~~~~~l~~l~~~~-~~----------~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 196 (230)
T PRK07580 128 FDTVVCLDVLIHYPQEDAARMLAHLASLT-RG----------SLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREK 196 (230)
T ss_pred cCEEEEcchhhcCCHHHHHHHHHHHHhhc-CC----------eEEEEECCccHHHHHHHHhccccCCccCCCCccccCHH
Confidence 9999999988553 34455555555554 32 2223322210 1223
Q ss_pred HHHHHHHHcCCeEEEEcCC
Q 008457 509 SMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~~~ 527 (564)
.+.+.+.+.||++.++...
T Consensus 197 ~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 197 GIRRALAAAGFKVVRTERI 215 (230)
T ss_pred HHHHHHHHCCCceEeeeec
Confidence 5667778889999888644
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.6e-09 Score=97.59 Aligned_cols=111 Identities=16% Similarity=0.120 Sum_probs=77.8
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
+...+.+...+.++.+|||||||+|.++..++.... .+|+++|+++++++.+++|+..++. .++.+...|....
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~----~~v~~~~~d~~~~ 140 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL----DNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCeEEEECCcccC
Confidence 334444444556889999999999988877766542 4799999999999999999998875 3466655544321
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
. ....+||+|+..... ..+.+.+.+.| +|+| ++++..
T Consensus 141 --~-----~~~~~fD~Ii~~~~~------~~~~~~~~~~L-~~gG--------~lv~~~ 177 (215)
T TIGR00080 141 --W-----EPLAPYDRIYVTAAG------PKIPEALIDQL-KEGG--------ILVMPV 177 (215)
T ss_pred --C-----cccCCCCEEEEcCCc------ccccHHHHHhc-CcCc--------EEEEEE
Confidence 0 113589999865432 33446678899 9988 777654
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.3e-10 Score=91.43 Aligned_cols=94 Identities=18% Similarity=0.294 Sum_probs=68.1
Q ss_pred EEEeCCcccHHHHHHHhcC----CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 380 VLELGCGCGGICSMVAAGS----ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 380 vLelG~G~G~l~~~~~~~~----~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
|||||||+|.....++... ..+++++|+|+++++.++++....+. ++++...|..+. +...++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-----~~~~~~~D~~~l-------~~~~~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-----KVRFVQADARDL-------PFSDGKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-----TSEEEESCTTCH-------HHHSSSE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-----ceEEEECCHhHC-------cccCCCe
Confidence 7999999997777777653 27999999999999999999876443 456666665432 2345699
Q ss_pred cEEEEece-ee--CCCChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTDV-SY--IPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d~-~y--~~~~~~~l~~~~~~ll~~~~g 486 (564)
|+|+++.. +. ..+....+++.+.++| +|+|
T Consensus 69 D~v~~~~~~~~~~~~~~~~~ll~~~~~~l-~pgG 101 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEALLRRIARLL-RPGG 101 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHHHHHHHHTE-EEEE
T ss_pred eEEEEcCCccCCCCHHHHHHHHHHHHHHh-CCCC
Confidence 99999654 33 3457899999999999 8865
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-09 Score=108.58 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=98.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
+..|.+.+.......++.+|||||||+|.++..++... .+|+++|+|+.+++.+++|+..|+. .++.+...|+.+
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~----~~v~~~~~d~~~ 356 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL----DNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC----CceEEEEeChHH
Confidence 45566666655445577899999999998877776654 7899999999999999999999886 347777776643
Q ss_pred CccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCe
Q 008457 441 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFR 520 (564)
Q Consensus 441 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~ 520 (564)
. +.. .++.+.+||+|++ |..|.. ....++.+.+ + ++++ .+|++.......-+ +..+.+.|++
T Consensus 357 ~--l~~-~~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~-~-~~~~--------ivyvSCnp~tlaRD--l~~L~~~gY~ 418 (443)
T PRK13168 357 D--FTD-QPWALGGFDKVLL-DPPRAG--AAEVMQALAK-L-GPKR--------IVYVSCNPATLARD--AGVLVEAGYR 418 (443)
T ss_pred h--hhh-hhhhcCCCCEEEE-CcCCcC--hHHHHHHHHh-c-CCCe--------EEEEEeChHHhhcc--HHHHhhCCcE
Confidence 2 111 0123457999874 666654 3455566655 3 4444 88888766554321 3444568999
Q ss_pred EEEEcCC
Q 008457 521 LVDKWPS 527 (564)
Q Consensus 521 ~~~~~~~ 527 (564)
++++-.+
T Consensus 419 l~~i~~~ 425 (443)
T PRK13168 419 LKRAGML 425 (443)
T ss_pred EEEEEEe
Confidence 9998633
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=94.94 Aligned_cols=159 Identities=13% Similarity=0.182 Sum_probs=114.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCC--cEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCcee
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPD--VFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
...+.+||||.||.|+...-.+..+|. ..+...|+|+..++.+++..+..+ .-++|.++|+.+..-... .+-..+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~-l~p~P~ 211 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA-LDPAPT 211 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc-cCCCCC
Confidence 357899999999999999888888776 689999999999999998776544 334999999876432212 133579
Q ss_pred EEEEcccccCCChhH-HHHHHHHHHhccCCCeEEEEEe--cCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 149 IVTMVFVLSAVSPEK-MSLVLQNIKKVLKPTGYVLFRD--YAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~-~~~~l~~~~r~LkpgG~lii~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+++.+.+++.+++++ +...|..+.+.+.|||+++.+. |++......+.... ++-...|..+ .-+..++.
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lts-Hr~g~~WvMR-------rRsq~EmD 283 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTS-HRDGKAWVMR-------RRSQAEMD 283 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhc-ccCCCceEEE-------ecCHHHHH
Confidence 999999999999766 5568999999999999999875 33322211222111 0001112111 34899999
Q ss_pred HHHHhCCCcEEEeee
Q 008457 226 SLFKENGFDVEELGL 240 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~ 240 (564)
++++.+||+.+....
T Consensus 284 ~Lv~~aGF~K~~q~I 298 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRI 298 (311)
T ss_pred HHHHHcCCchhhhee
Confidence 999999999766544
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-10 Score=101.13 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=91.4
Q ss_pred CCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh-hhcCCCc
Q 008457 377 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENNEGF 455 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~-~~~~~~f 455 (564)
=+++|||||||| +.+..+...+.+++++|+|..|++.+.+.-.-..+ -+. +...+. ...+.+|
T Consensus 126 F~~~lDLGCGTG-L~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L-------~~A--------ea~~Fl~~~~~er~ 189 (287)
T COG4976 126 FRRMLDLGCGTG-LTGEALRDMADRLTGVDISENMLAKAHEKGLYDTL-------YVA--------EAVLFLEDLTQERF 189 (287)
T ss_pred cceeeecccCcC-cccHhHHHHHhhccCCchhHHHHHHHHhccchHHH-------HHH--------HHHHHhhhccCCcc
Confidence 469999999999 77777776788999999999999887653111000 000 000011 1356799
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------ccC-ChhHHHHHHHHcCCeE
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------RQV-DEPSMLSAATQCGFRL 521 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-------------r~~-~~~~~~~~~~~~g~~~ 521 (564)
|+|.++||+-+--.++.++-.+..+| +|+| .|.++... |-- .+......++..||++
T Consensus 190 DLi~AaDVl~YlG~Le~~~~~aa~~L-~~gG--------lfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 190 DLIVAADVLPYLGALEGLFAGAAGLL-APGG--------LFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEV 260 (287)
T ss_pred cchhhhhHHHhhcchhhHHHHHHHhc-CCCc--------eEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceE
Confidence 99999999999999999999999999 9988 44444332 322 3356778889999999
Q ss_pred EEEcCCC
Q 008457 522 VDKWPSK 528 (564)
Q Consensus 522 ~~~~~~~ 528 (564)
..+-.+.
T Consensus 261 i~~~~tt 267 (287)
T COG4976 261 IAIEDTT 267 (287)
T ss_pred EEeeccc
Confidence 9986553
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-09 Score=101.13 Aligned_cols=102 Identities=11% Similarity=0.119 Sum_probs=78.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..+.+|||||||+|.++..++..+. .+|+++|+++.+++.++.+... ++.+...|..+. +++++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--------~~~~~~~d~~~~-------~~~~~ 97 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE--------NVQFICGDAEKL-------PLEDS 97 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC--------CCeEEecchhhC-------CCCCC
Confidence 3567999999999988877776653 4799999999999988876531 234444443322 23456
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
+||+|+++.++.+..+...+++.+.++| +|+| .++++.
T Consensus 98 ~fD~vi~~~~l~~~~~~~~~l~~~~~~L-~~~G--------~l~~~~ 135 (240)
T TIGR02072 98 SFDLIVSNLALQWCDDLSQALSELARVL-KPGG--------LLAFST 135 (240)
T ss_pred ceeEEEEhhhhhhccCHHHHHHHHHHHc-CCCc--------EEEEEe
Confidence 8999999999999889999999999999 9988 777654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=94.16 Aligned_cols=143 Identities=11% Similarity=0.153 Sum_probs=94.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.+...++......++++|+++++++.++++ + +.+...+..+. +.++.+++|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~-------~~~~~~d~~~~-----l~~~~~~sf 76 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G-------VNVIQGDLDEG-----LEAFPDKSF 76 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C-------CeEEEEEhhhc-----ccccCCCCc
Confidence 5679999999999877666655556789999999999877542 1 23333333211 112345689
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE--------------------------------eec
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH--------------------------------IFR 503 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~--------------------------------~~r 503 (564)
|+|+++.++.+..+...+++.+.+.+ +.. +++. ..+
T Consensus 77 D~Vi~~~~l~~~~d~~~~l~e~~r~~-~~~-----------ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (194)
T TIGR02081 77 DYVILSQTLQATRNPEEILDEMLRVG-RHA-----------IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIH 144 (194)
T ss_pred CEEEEhhHhHcCcCHHHHHHHHHHhC-CeE-----------EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcc
Confidence 99999999999888888888888777 431 1110 011
Q ss_pred cCChhHHHHHHHHcCCeEEEEcCCCCCCCCccccccccccCCCCc
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHE 548 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (564)
..+...+.+.++++||++.+..-. +....-+-.-.|||+-.+.
T Consensus 145 ~~s~~~~~~ll~~~Gf~v~~~~~~--~~~~~~~~~~~~~~~~~~~ 187 (194)
T TIGR02081 145 FCTIADFEDLCGELNLRILDRAAF--DVDGRGGREVRWFPNLRGE 187 (194)
T ss_pred cCcHHHHHHHHHHCCCEEEEEEEe--ccccccccccccCcccccc
Confidence 223457889999999999987533 2222233344899964443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.6e-09 Score=96.41 Aligned_cols=114 Identities=18% Similarity=0.093 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
+..+..++.....+.++.+|||+|||+|.++..++... ..+|+++|+++++++.+++|+..++. .++.+..-|-
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~----~~v~~~~gd~ 136 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY----DNVEVIVGDG 136 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCeEEEECCc
Confidence 34445555555556688999999999998877766653 25999999999999999999998765 3455554442
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
... .....+||+|++.... +.+.+.+.+.| +|+| ++++..
T Consensus 137 ~~~-------~~~~~~fD~I~~~~~~------~~~~~~l~~~L-kpgG--------~lvi~~ 176 (212)
T PRK13942 137 TLG-------YEENAPYDRIYVTAAG------PDIPKPLIEQL-KDGG--------IMVIPV 176 (212)
T ss_pred ccC-------CCcCCCcCEEEECCCc------ccchHHHHHhh-CCCc--------EEEEEE
Confidence 211 0124689999865332 23345677789 9988 666653
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=97.88 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=66.3
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc----C-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG----S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE 449 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~----~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~ 449 (564)
.++.+|||||||+|.++..++.. + ..+|+++|+++.+++.++++...++. .+...+-. .+ +
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~~~~~~~---~l----~ 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV-------TFRQAVSD---EL----V 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC-------eEEEEecc---cc----c
Confidence 36679999999999777666532 2 24899999999999999887654332 22222211 11 1
Q ss_pred hcCCCccEEEEeceeeCCCC--hHHHHHHHHHHh
Q 008457 450 ENNEGFEVILGTDVSYIPEA--ILPLFATAKELT 481 (564)
Q Consensus 450 ~~~~~fD~Ii~~d~~y~~~~--~~~l~~~~~~ll 481 (564)
..+++||+|+++.++++..+ ...+++.+.+++
T Consensus 125 ~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~ 158 (232)
T PRK06202 125 AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALA 158 (232)
T ss_pred ccCCCccEEEECCeeecCChHHHHHHHHHHHHhc
Confidence 13568999999999988665 457888998888
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.2e-09 Score=89.91 Aligned_cols=144 Identities=20% Similarity=0.322 Sum_probs=99.6
Q ss_pred hHHHHHHHHhcCCC-C--CCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEE
Q 008457 360 SAHLMAAVLARNPT-I--VAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK 434 (564)
Q Consensus 360 ~~~~l~~~l~~~~~-~--~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~ 434 (564)
.+++|.+-|..... + ....-+||||||+|.++..++.. +...+.+||+||.+++..++.+..|+.. +.+.
T Consensus 24 DTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-----~~~V 98 (209)
T KOG3191|consen 24 DTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-----IDVV 98 (209)
T ss_pred hhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-----ccee
Confidence 34555555554211 1 12567999999999777666664 3458999999999999999999988753 2322
Q ss_pred EeecCCCccchhhhhhcCCCccEEEEeceeeCC----------------------CChHHHHHHHHHHhhccCCCCCCCC
Q 008457 435 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP----------------------EAILPLFATAKELTASSNKSLREDQ 492 (564)
Q Consensus 435 ~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~----------------------~~~~~l~~~~~~ll~~~~g~~~~~~ 492 (564)
.-|. .. .+..++.|+++-+. .|-+ +..+.|+..+..+| +|.|
T Consensus 99 ~tdl-----~~---~l~~~~VDvLvfNP-PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iL-Sp~G------ 162 (209)
T KOG3191|consen 99 RTDL-----LS---GLRNESVDVLVFNP-PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDIL-SPRG------ 162 (209)
T ss_pred ehhH-----Hh---hhccCCccEEEECC-CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhc-CcCc------
Confidence 2222 22 23447999887543 2321 23678888889999 9988
Q ss_pred CcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 493 QPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 493 ~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
++|+....++... +.+..++..||.+...+..
T Consensus 163 --v~Ylv~~~~N~p~-ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 163 --VFYLVALRANKPK-EILKILEKKGYGVRIAMQR 194 (209)
T ss_pred --eEEeeehhhcCHH-HHHHHHhhcccceeEEEEE
Confidence 8998877666544 6788888999999988744
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-09 Score=94.95 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=77.9
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCce
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+.+...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++... ..+++++.+|+.... +++..|
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~----~~~~~~ 78 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFD----LPKLQP 78 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCC----ccccCC
Confidence 34444467789999999999999999988 67899999999999999988753 357899999986543 345579
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
|.|+++--++ ++...+..+++.. .+.++|.+++.
T Consensus 79 d~vi~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 79 YKVVGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred CEEEECCCcc-cHHHHHHHHHhcC--CCcceEEEEEE
Confidence 9999875443 4323334443322 24577888774
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-08 Score=97.75 Aligned_cols=108 Identities=21% Similarity=0.249 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc--------cccCCCeeEEEecCCcccccCCCCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK--------DFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~--------~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
..+.+||+||||+|..++.+++..+..+|+++|+++++++.|+... .....+++++.+|....- .-..+
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL---~~~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL---SSPSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH---HhcCC
Confidence 5678999999999999888887655579999999999999999631 112468899999986421 11356
Q ss_pred ceeEEEEccccc---CCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 146 SIDIVTMVFVLS---AVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 146 ~fD~V~~~~vl~---~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+||+|++...-. ....---..+++.+++.|+|||++++.
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 899999964211 111112356899999999999998875
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-09 Score=97.25 Aligned_cols=111 Identities=19% Similarity=0.259 Sum_probs=79.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh--cC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~--~~ 452 (564)
.++.+||||.||||.++..++++++++|+++|.|+.++..+++|++.-+.. .++.+...| ....+..+ ..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~---~~~~v~~~d-----~~~~l~~~~~~~ 112 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE---DKIRVIKGD-----AFKFLLKLAKKG 112 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G---GGEEEEESS-----HHHHHHHHHHCT
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC---cceeeeccC-----HHHHHHhhcccC
Confidence 589999999999999999999999999999999999999999999987764 234444332 22233222 46
Q ss_pred CCccEEEEeceeeCCCCh-HHHHHHHH--HHhhccCCCCCCCCCcEEEEEEeec
Q 008457 453 EGFEVILGTDVSYIPEAI-LPLFATAK--ELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~-~~l~~~~~--~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
.+||+|+ .|+.|..... +.++..+. .+| +++| .+++-+..+
T Consensus 113 ~~fDiIf-lDPPY~~~~~~~~~l~~l~~~~~l-~~~~--------~ii~E~~~~ 156 (183)
T PF03602_consen 113 EKFDIIF-LDPPYAKGLYYEELLELLAENNLL-NEDG--------LIIIEHSKK 156 (183)
T ss_dssp S-EEEEE-E--STTSCHHHHHHHHHHHHTTSE-EEEE--------EEEEEEETT
T ss_pred CCceEEE-ECCCcccchHHHHHHHHHHHCCCC-CCCE--------EEEEEecCC
Confidence 7999876 7999998884 88998887 688 7765 666655544
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-08 Score=99.35 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=86.4
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+..+.....+.++.+|||+|||+|.++..++...+ .+++++|. |.+++.+++|+...+.. +++.+...|..+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~---~rv~~~~~d~~~~-- 211 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA---DRMRGIAVDIYKE-- 211 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc---ceEEEEecCccCC--
Confidence 34444444555778999999999988887877654 58999998 89999999999988764 5677776665432
Q ss_pred chhhhhhcCCCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
++ ..+|+|+.+-++++.. ....+++.+.+.| +|+| ++++...
T Consensus 212 -----~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L-~pgG--------~l~i~d~ 255 (306)
T TIGR02716 212 -----SY--PEADAVLFCRILYSANEQLSTIMCKKAFDAM-RSGG--------RLLILDM 255 (306)
T ss_pred -----CC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhc-CCCC--------EEEEEEe
Confidence 11 2479999998887654 3467999999999 9988 7766643
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=113.93 Aligned_cols=154 Identities=21% Similarity=0.205 Sum_probs=106.2
Q ss_pred chhHHHHHHHHhcCCC-CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCC---------
Q 008457 358 WESAHLMAAVLARNPT-IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPP--------- 426 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~-~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~--------- 426 (564)
=+.+..|.+.+...+. .+++.+|||||||+|.++..++... ..+|+++|+|+++++.+++|+..|++..
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~ 178 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE 178 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence 3667777877655432 2456799999999998888888765 3699999999999999999999986531
Q ss_pred ---CCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceee---------------CC----------C----------
Q 008457 427 ---FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY---------------IP----------E---------- 468 (564)
Q Consensus 427 ---~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y---------------~~----------~---------- 468 (564)
...++.+..-||.+. . .. ...+||+||++...- .+ .
T Consensus 179 ~~~l~~rV~f~~sDl~~~--~---~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d 252 (1082)
T PLN02672 179 GKTLLDRVEFYESDLLGY--C---RD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF 252 (1082)
T ss_pred cccccccEEEEECchhhh--c---cc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence 124577777777532 1 00 113699999774311 00 0
Q ss_pred ---ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHH-HHHHHcCCeEEEEcCCC
Q 008457 469 ---AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML-SAATQCGFRLVDKWPSK 528 (564)
Q Consensus 469 ---~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~g~~~~~~~~~~ 528 (564)
.+..++....++| +|+| .+++-...++.. ... +.+.+.||+..++|...
T Consensus 253 GL~~yr~i~~~a~~~L-~pgG--------~l~lEiG~~q~~--~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 253 GLGLIARAVEEGISVI-KPMG--------IMIFNMGGRPGQ--AVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred HHHHHHHHHHHHHHhc-cCCC--------EEEEEECccHHH--HHHHHHHHHCCCCeeEEeeeh
Confidence 1255677777888 8887 776655544432 455 46678999999998763
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-08 Score=104.64 Aligned_cols=114 Identities=19% Similarity=0.231 Sum_probs=85.7
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+...++.+|||+|||+|..+..+++.. ++.+|+++|+|+.+++.++++....+ .++++.+.|+... .++++|
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~-----~~~~~f 319 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF-----SPEEQP 319 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc-----ccCCCC
Confidence 4455678999999999999998888764 35699999999999999998876544 3688888888542 145689
Q ss_pred eEEEEc---c---ccc-------CCChh-------HHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 148 DIVTMV---F---VLS-------AVSPE-------KMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 148 D~V~~~---~---vl~-------~~~~~-------~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
|+|++- . ++. +.+++ ....+|.++.+.|||||++++++-..
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999962 1 111 12222 23468999999999999999987554
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-08 Score=104.78 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=85.9
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
..+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++....+ .++.++++|+.... ..++ ++
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~--~~~~-~~ 320 (444)
T PRK14902 244 PALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH--EKFA-EK 320 (444)
T ss_pred HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc--chhc-cc
Confidence 34555778999999999999999999874 56799999999999999998875444 45889999986431 1223 68
Q ss_pred eeEEEEccc------ccCCC-------hhH-------HHHHHHHHHhccCCCeEEEEEecC
Q 008457 147 IDIVTMVFV------LSAVS-------PEK-------MSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 147 fD~V~~~~v------l~~~~-------~~~-------~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
||+|++..- +.+-| +.+ ...+|..+.++|||||.++.++-.
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 999998431 11111 112 346899999999999999976543
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.3e-08 Score=93.64 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=96.4
Q ss_pred ceechhHH-HHHHHHhc---CCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCC
Q 008457 355 LMLWESAH-LMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFL 428 (564)
Q Consensus 355 ~~~W~~~~-~l~~~l~~---~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~ 428 (564)
..+|+.-+ .||..++. ...+.++.+|||||||+|..+..++... ...|+++|+++++++.+..-+...
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------ 180 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------ 180 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------
Confidence 78886643 46655544 2345688899999999998888888764 358999999988764444322210
Q ss_pred CceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh-
Q 008457 429 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE- 507 (564)
Q Consensus 429 ~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~- 507 (564)
.++....-|.... ..+ ......||+|++ |+. .+.....++..+.++| +|+| .+++....+..+.
T Consensus 181 ~NI~~I~~Da~~p---~~y-~~~~~~vDvV~~-Dva-~pdq~~il~~na~r~L-KpGG--------~~vI~ika~~id~g 245 (293)
T PTZ00146 181 PNIVPIIEDARYP---QKY-RMLVPMVDVIFA-DVA-QPDQARIVALNAQYFL-KNGG--------HFIISIKANCIDST 245 (293)
T ss_pred CCCEEEECCccCh---hhh-hcccCCCCEEEE-eCC-CcchHHHHHHHHHHhc-cCCC--------EEEEEEeccccccC
Confidence 1233333332211 011 112347999874 543 4555667778899999 9988 7777655543321
Q ss_pred ---hHH----HHHHHHcCCeEEEEcCC
Q 008457 508 ---PSM----LSAATQCGFRLVDKWPS 527 (564)
Q Consensus 508 ---~~~----~~~~~~~g~~~~~~~~~ 527 (564)
... .+++++.||++.+....
T Consensus 246 ~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 246 AKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred CCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 222 46688899999988754
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.5e-08 Score=91.47 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=82.0
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh-hhh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI-KEE 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~-~~~ 450 (564)
+.++.+|||||||+|.++..++... ..+|+++|+++ + +.. ..+.+...|..+....+.+ ..+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~----~~v~~i~~D~~~~~~~~~i~~~~ 113 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI----VGVDFLQGDFRDELVLKALLERV 113 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC----CCcEEEecCCCChHHHHHHHHHh
Confidence 4578899999999998887777764 35899999987 1 111 2366666776654222222 134
Q ss_pred cCCCccEEEEeceeeCCC-----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCC
Q 008457 451 NNEGFEVILGTDVSYIPE-----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF 519 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~-----------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~ 519 (564)
..++||+|++.-+.+... .+..+++.+.++| +|+| .+++.. .+......++..+. ..|
T Consensus 114 ~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~L-kpGG--------~~vi~~-~~~~~~~~~l~~l~-~~f 182 (209)
T PRK11188 114 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVL-APGG--------SFVVKV-FQGEGFDEYLREIR-SLF 182 (209)
T ss_pred CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHc-CCCC--------EEEEEE-ecCcCHHHHHHHHH-hCc
Confidence 567899999754333221 1356889999999 9988 777753 33344446666554 366
Q ss_pred eEEEEc
Q 008457 520 RLVDKW 525 (564)
Q Consensus 520 ~~~~~~ 525 (564)
.-.++.
T Consensus 183 ~~v~~~ 188 (209)
T PRK11188 183 TKVKVR 188 (209)
T ss_pred eEEEEE
Confidence 666665
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-09 Score=96.24 Aligned_cols=110 Identities=23% Similarity=0.328 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-cCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
....+||||||.|.++..++..+|+..++|+|+....+..|.++... ...|+.++++|+... +..-++++++|.|+.+
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~-l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL-LRRLFPPGSVDRIYIN 95 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-HHHHSTTTSEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-HhhcccCCchheEEEe
Confidence 33489999999999999999999999999999999999888877654 347999999998652 2223467899999997
Q ss_pred ccccCCChh------HHHHHHHHHHhccCCCeEEEEEe
Q 008457 154 FVLSAVSPE------KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 154 ~vl~~~~~~------~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+-=-|.-.. --..++..+.++|+|||.|.+.+
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 754443211 13479999999999999999865
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.1e-09 Score=93.17 Aligned_cols=99 Identities=23% Similarity=0.257 Sum_probs=75.0
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
...+.+++||||||.|.-+..++.+|. .|+++|.|+.+++.+++-++..+++ |++...|..+.. + +
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~-----i~~~~~Dl~~~~-------~-~ 92 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD-----IRTRVADLNDFD-------F-P 92 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T-----EEEEE-BGCCBS---------T
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce-----eEEEEecchhcc-------c-c
Confidence 345788999999999988888887765 7999999999999998887776653 777777765431 2 3
Q ss_pred CCccEEEEeceeeC--CCChHHHHHHHHHHhhccCC
Q 008457 453 EGFEVILGTDVSYI--PEAILPLFATAKELTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g 486 (564)
+.||+|++.-++.+ .+..+.+++.++..+ +|+|
T Consensus 93 ~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~-~pGG 127 (192)
T PF03848_consen 93 EEYDFIVSTVVFMFLQRELRPQIIENMKAAT-KPGG 127 (192)
T ss_dssp TTEEEEEEESSGGGS-GGGHHHHHHHHHHTE-EEEE
T ss_pred CCcCEEEEEEEeccCCHHHHHHHHHHHHhhc-CCcE
Confidence 58999997655443 668889999999999 9987
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.8e-09 Score=97.23 Aligned_cols=89 Identities=19% Similarity=0.179 Sum_probs=69.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||||||||.++..++.....+|+++|+|++|++.+++.. ..+ ..+.. .+ ++++++|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~---~~d~~------~l-p~~d~sf 111 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKV---VGSFE------AL-PFRDKSF 111 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceE---Eechh------hC-CCCCCCE
Confidence 36799999999997777776654569999999999999887631 111 11111 11 4567899
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhcc
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASS 484 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~ 484 (564)
|+|+++.++.+..+.+.+++.+.++| +|
T Consensus 112 D~v~~~~~l~~~~d~~~~l~e~~RvL-kp 139 (226)
T PRK05785 112 DVVMSSFALHASDNIEKVIAEFTRVS-RK 139 (226)
T ss_pred EEEEecChhhccCCHHHHHHHHHHHh-cC
Confidence 99999999999999999999999999 77
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=89.86 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=82.0
Q ss_pred CeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccE
Q 008457 378 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV 457 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~ 457 (564)
..|||+|||||.---.+--....+|+++|.++.|-+.+.+.+..|... .+. .+.... .+.+..++++++|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~----~~~--~fvva~---ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL----QVE--RFVVAD---GENLPQLADGSYDT 148 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc----ceE--EEEeec---hhcCcccccCCeee
Confidence 468999999994333333334569999999999999999999888442 222 222222 22333467889999
Q ss_pred EEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC
Q 008457 458 ILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 505 (564)
Q Consensus 458 Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~ 505 (564)
|+++=|+-..++....++.+.++| +|+| ++++--+.+.+
T Consensus 149 VV~TlvLCSve~~~k~L~e~~rlL-RpgG--------~iifiEHva~~ 187 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPVKQLNEVRRLL-RPGG--------RIIFIEHVAGE 187 (252)
T ss_pred EEEEEEEeccCCHHHHHHHHHHhc-CCCc--------EEEEEeccccc
Confidence 999999999999999999999999 9988 77766555543
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-08 Score=106.02 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=81.1
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|+++....+ .+++++++|+.......++.++
T Consensus 289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALG 366 (443)
T ss_pred HHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcC
Confidence 334455567889999999999999999988 4789999999999999998765433 4689999998542111124456
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+||+|+++- |.......++.+.+ ++|++.++++.
T Consensus 367 ~fD~Vi~dP-----Pr~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 367 GFDKVLLDP-----PRAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CCCEEEECc-----CCcChHHHHHHHHh-cCCCeEEEEEe
Confidence 899998833 22223345655555 69999999874
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.6e-09 Score=97.71 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=84.0
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccc--ccCCCCCC
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDD--LSRQISPS 145 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~ 145 (564)
....++.+|||+|||+|.-+..++... ++.+|+++|+++++++.|++++...+ .+++++.+|+...- +....+.+
T Consensus 64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 334678899999999999988888764 46799999999999999999876544 57899999885421 10011246
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+||+|++... ......++..+.++|+|||.+++..
T Consensus 144 ~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 144 EFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 8999988432 2455678999999999999988754
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=94.41 Aligned_cols=129 Identities=9% Similarity=0.023 Sum_probs=88.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh-hcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-ENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-~~~~ 453 (564)
...+|||||||+|.++..++... ..+|+++|+++.+++.+++|+..+++ .++.+...|..+. ... ++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l----~ni~~i~~d~~~~-----~~~~~~~~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL----KNLHVLCGDANEL-----LDKFFPDG 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC----CCEEEEccCHHHH-----HHhhCCCC
Confidence 45689999999998877777654 45899999999999999999988765 3566554443211 111 2345
Q ss_pred CccEEEEec-eeeCCC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcC-CeEEE
Q 008457 454 GFEVILGTD-VSYIPE-------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG-FRLVD 523 (564)
Q Consensus 454 ~fD~Ii~~d-~~y~~~-------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g-~~~~~ 523 (564)
.+|.|+..= ..+... ..+.+++.+.++| +|+| .+++++....... .+.+.+.+.+ |....
T Consensus 87 ~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~L-kpgG--------~l~~~td~~~~~~-~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 87 SLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVL-KKGG--------VIHFKTDNEPLFE-DMLKVLSENDLFENTS 155 (194)
T ss_pred ceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHh-CCCC--------EEEEEeCCHHHHH-HHHHHHHhCCCeEecc
Confidence 899988652 122221 1278999999999 9988 8888765554332 4566666665 66554
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-08 Score=97.11 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=84.9
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+.+.++.+|||+|||+|..+..+++... ..+|+++|+++.+++.++++....+ .++.+...|..... ...++|
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~----~~~~~f 141 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG----AAVPKF 141 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh----hhccCC
Confidence 44557889999999999999999988743 4689999999999999998876544 46788888875321 134569
Q ss_pred eEEEEcc------cccC-------CChh-------HHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 148 DIVTMVF------VLSA-------VSPE-------KMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 148 D~V~~~~------vl~~-------~~~~-------~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
|+|++.. ++.+ .+++ ....+|+++.++|||||+|+.++-..
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999732 2221 1111 23569999999999999999876443
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-08 Score=103.96 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=87.7
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
..+.+.++.+|||+|||+|..+.++++.. ++.+|+++|+++.+++.++++....+ .++.+.+.|..... .+..++
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~---~~~~~~ 307 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT---EYVQDT 307 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh---hhhhcc
Confidence 34556788999999999999999998874 46799999999999999998876544 35788888875421 123568
Q ss_pred eeEEEEcc---cccCC----------Ch-------hHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 147 IDIVTMVF---VLSAV----------SP-------EKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 147 fD~V~~~~---vl~~~----------~~-------~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
||.|++.. .+..+ ++ ....++|.++.+.|||||.++.++-..
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99999732 22222 11 134677999999999999999876554
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=95.24 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=95.0
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC-CeeEEEecCCcccccCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-RVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~ 144 (564)
.|.+++.......+||||||.|.++..+|+..|...++|||+....+..|.++....+. |+.+++.|+.... ..-+++
T Consensus 39 ~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l-~~~~~~ 117 (227)
T COG0220 39 DWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVL-DYLIPD 117 (227)
T ss_pred hHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHH-HhcCCC
Confidence 34455554445789999999999999999999999999999999999999888877777 9999999986432 212355
Q ss_pred CceeEEEEcccccCCC------hhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 145 SSIDIVTMVFVLSAVS------PEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~------~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++.|-|+.++-=-|-- +--...+++.+.++|+|||.|.+.+-.
T Consensus 118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 6999999987654431 112457999999999999999997543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=99.61 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.++.+||+||||.|..++.+++..+..+|+.+|+++.+++.|++.+.. ...+++++.+|....-. ..++++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~--~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK--NAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh--hccCCCCC
Confidence 568999999999999999998763346899999999999999997643 23589999999743211 12356899
Q ss_pred EEEEcccccCCChh--HHHHHHHHHHhccCCCeEEEEE
Q 008457 149 IVTMVFVLSAVSPE--KMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 149 ~V~~~~vl~~~~~~--~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+|++-..-.+.+.. --..+++.+++.|+|||+++..
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99995543332211 1356899999999999999763
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-08 Score=94.02 Aligned_cols=126 Identities=15% Similarity=0.078 Sum_probs=87.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
...+|||+|||+|.++..++... ..+|+++|+++.+++.+++|.. .+.+..-|.. + + ....+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~---------~v~~v~~D~~-----e-~--~~~~k 126 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP---------EAEWITSDVF-----E-F--ESNEK 126 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc---------CCEEEECchh-----h-h--cccCC
Confidence 45689999999997777666654 5699999999999999998731 1222222211 1 1 12358
Q ss_pred ccEEEEeceeeCCC--------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-----CChhH
Q 008457 455 FEVILGTDVSYIPE--------------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----VDEPS 509 (564)
Q Consensus 455 fD~Ii~~d~~y~~~--------------------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-----~~~~~ 509 (564)
||+|+++...++.. .+..++.....+| +|+| .+++++..+. .+.++
T Consensus 127 FDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L-~p~G--------~~~~~yss~~~y~~sl~~~~ 197 (279)
T PHA03411 127 FDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFI-VPTG--------SAGFAYSGRPYYDGTMKSNK 197 (279)
T ss_pred CcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHhee-cCCc--------eEEEEEeccccccccCCHHH
Confidence 99999887766421 1467778888888 8887 7777766643 23467
Q ss_pred HHHHHHHcCCeEEEEcCC
Q 008457 510 MLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 510 ~~~~~~~~g~~~~~~~~~ 527 (564)
....+++.||....-+.+
T Consensus 198 y~~~l~~~g~~~~~~~~~ 215 (279)
T PHA03411 198 YLKWSKQTGLVTYAGCGI 215 (279)
T ss_pred HHHHHHhcCcEecCCCCc
Confidence 788889999998765544
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-09 Score=95.29 Aligned_cols=155 Identities=16% Similarity=0.160 Sum_probs=113.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
+....++|||||.|...++|..+. -.+++-+|-|-.|++.++.... ......+..+|-... +|.++++|+|++.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE~L----df~ens~DLiisS 144 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEEFL----DFKENSVDLIISS 144 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-CceEEEEEecchhcc----cccccchhhhhhh
Confidence 456789999999999999998884 3479999999999998876532 233445566665432 5789999999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceee---ccCHHHHHHHHHh
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAF---YFSNDFLTSLFKE 230 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~ 230 (564)
..+||+ +++...+.+++..|||+|.++.+-++.......+..-....+.+ ..|..++ +-...++..++.+
T Consensus 145 lslHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER-----~GGiSphiSPf~qvrDiG~LL~r 217 (325)
T KOG2940|consen 145 LSLHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELER-----EGGISPHISPFTQVRDIGNLLTR 217 (325)
T ss_pred hhhhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHh-----ccCCCCCcChhhhhhhhhhHHhh
Confidence 999999 68889999999999999999988777666555543322221111 1222221 3456889999999
Q ss_pred CCCcEEEeeee
Q 008457 231 NGFDVEELGLC 241 (564)
Q Consensus 231 aGf~~~~~~~~ 241 (564)
|||....+...
T Consensus 218 AGF~m~tvDtD 228 (325)
T KOG2940|consen 218 AGFSMLTVDTD 228 (325)
T ss_pred cCcccceeccc
Confidence 99988765443
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.5e-08 Score=89.70 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=85.6
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
.+.+.......+.++.+|||+|||+|+++..++... ..+|+++|+++.+ .. ..+.+...|..+
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~----~~i~~~~~d~~~ 83 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI----ENVDFIRGDFTD 83 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC----CCceEEEeeCCC
Confidence 445555555666789999999999998887777654 4589999999853 11 234555556554
Q ss_pred Cccchhhh-hhcCCCccEEEEeceee-----CCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh
Q 008457 441 RDHIEAIK-EENNEGFEVILGTDVSY-----IPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP 508 (564)
Q Consensus 441 ~~~~~~~~-~~~~~~fD~Ii~~d~~y-----~~~------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~ 508 (564)
....+.+. ....++||+|++.-..+ ... ..+.+++.+.++| +|+| ++++.. .......
T Consensus 84 ~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~lvi~~-~~~~~~~ 153 (188)
T TIGR00438 84 EEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVL-KPKG--------NFVVKV-FQGEEID 153 (188)
T ss_pred hhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHc-cCCC--------EEEEEE-ccCccHH
Confidence 32222222 23456899999642211 111 2367899999999 9988 777643 2223333
Q ss_pred HHHHHHHHcCCeEEEEc
Q 008457 509 SMLSAATQCGFRLVDKW 525 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~ 525 (564)
.++..++. +|...++.
T Consensus 154 ~~l~~l~~-~~~~~~~~ 169 (188)
T TIGR00438 154 EYLNELRK-LFEKVKVT 169 (188)
T ss_pred HHHHHHHh-hhceEEEe
Confidence 56666655 46656554
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-08 Score=111.07 Aligned_cols=133 Identities=24% Similarity=0.352 Sum_probs=93.9
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-----------------CCCeeEEEecCCcccc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----------------ETRVSTFVCDLISDDL 138 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-----------------~~~i~~~~~d~~~~~~ 138 (564)
+.+|||+|||+|..+..++..++..+|+|+|+|+.+++.|+.+.... ..+++++++|+.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999988789999999999999998876432 1368999999864211
Q ss_pred cCCCCCCceeEEEEccc--c----cCCC------------------------------hhHHHHHHHHHHhccCCCeEEE
Q 008457 139 SRQISPSSIDIVTMVFV--L----SAVS------------------------------PEKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 139 ~~~~~~~~fD~V~~~~v--l----~~~~------------------------------~~~~~~~l~~~~r~LkpgG~li 182 (564)
. ...+||+|++|=- . ..++ .+-.++++.++.++|+|||.++
T Consensus 199 --~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 199 --D-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred --c-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 0 1236999999532 1 0110 0123677888889999999988
Q ss_pred EEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH-HHHHhCCCcEEEeeeee
Q 008457 183 FRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT-SLFKENGFDVEELGLCC 242 (564)
Q Consensus 183 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~aGf~~~~~~~~~ 242 (564)
+.. +.. ..+.+. ++|++.||..+.++...
T Consensus 276 lEi-G~~------------------------------q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 276 FNM-GGR------------------------------PGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred EEE-Ccc------------------------------HHHHHHHHHHHHCCCCeeEEeeeh
Confidence 742 211 245566 58888888876655443
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-07 Score=82.73 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=91.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
..+.+|+|+|||||.++...+-.+ ..+|+|+|+++++++.++++......++.|+++|+.. ..+.+|.|+.|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~-------~~~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSD-------FRGKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhh-------cCCccceEEEC
Confidence 578899999999999998877764 4689999999999999999988777899999999965 34678888885
Q ss_pred ccccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 154 FVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 154 ~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
=-+.-.- ..|. .++....+.- -++.+-+.. -+.+.+++..+.+|
T Consensus 116 PPFG~~~rhaDr-~Fl~~Ale~s----~vVYsiH~a------------------------------~~~~f~~~~~~~~G 160 (198)
T COG2263 116 PPFGSQRRHADR-PFLLKALEIS----DVVYSIHKA------------------------------GSRDFVEKFAADLG 160 (198)
T ss_pred CCCccccccCCH-HHHHHHHHhh----heEEEeecc------------------------------ccHHHHHHHHHhcC
Confidence 4333221 1132 3444444433 122221111 15788899999999
Q ss_pred CcEEEeeeeeccccc
Q 008457 233 FDVEELGLCCKQVEN 247 (564)
Q Consensus 233 f~~~~~~~~~~~~~~ 247 (564)
+.+...+...-+++.
T Consensus 161 ~~v~~~~~~~~~iP~ 175 (198)
T COG2263 161 GTVTHIERARFPIPR 175 (198)
T ss_pred CeEEEEEEEEEecCc
Confidence 988876554444433
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.3e-08 Score=91.92 Aligned_cols=90 Identities=10% Similarity=0.052 Sum_probs=63.0
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.++.+|||+|||+|.+...++.. +..+|+++|+|+++++.++++.. .+.+...+..+ +..++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~--------~~~~~ 104 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFD--------PFKDN 104 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccC--------CCCCC
Confidence 36779999999999777766665 45689999999999999988642 12233333221 23467
Q ss_pred CccEEEEeceeeCCC--ChHHHHHHHHHHh
Q 008457 454 GFEVILGTDVSYIPE--AILPLFATAKELT 481 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll 481 (564)
+||+|++..++++.. .+..+++.+.+++
T Consensus 105 sfD~V~~~~vL~hl~p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 105 FFDLVLTKGVLIHINPDNLPTAYRELYRCS 134 (204)
T ss_pred CEEEEEECChhhhCCHHHHHHHHHHHHhhc
Confidence 999999999998753 3455555555555
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=98.43 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=84.9
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchh
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
.+.++..+++++.|||+|||||.++..++..|+++|+++|.+ ++.+.+++.+..|++. +.|.+..-.-.+ +
T Consensus 51 ~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~~---~ii~vi~gkvEd---i-- 121 (346)
T KOG1499|consen 51 AILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGLE---DVITVIKGKVED---I-- 121 (346)
T ss_pred HHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEech-HHHHHHHHHHHhcCcc---ceEEEeecceEE---E--
Confidence 345677889999999999999988888888899999999996 5669999999999985 445554332221 1
Q ss_pred hhhhcCCCccEEEEec---eeeCCCChHHHHHHHHHHhhccCCC
Q 008457 447 IKEENNEGFEVILGTD---VSYIPEAILPLFATAKELTASSNKS 487 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d---~~y~~~~~~~l~~~~~~ll~~~~g~ 487 (564)
.+|.+++|+|++-. +++....++..+-.=.+.| +++|-
T Consensus 122 --~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL-~~~G~ 162 (346)
T KOG1499|consen 122 --ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWL-KEGGL 162 (346)
T ss_pred --ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhcc-CCCce
Confidence 34557999999665 4556778888888888999 88883
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=98.04 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-----CCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+.+||+||||+|..+..+++..+..+++++|+++.+++.|++..... ..++++...|....-. -..++||
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~---~~~~~yD 147 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA---DTENTFD 147 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH---hCCCCcc
Confidence 4556999999999999988887755678999999999999999875321 2467777777643110 1246899
Q ss_pred EEEEcccccCCChhH--HHHHHHHHHhccCCCeEEEEE
Q 008457 149 IVTMVFVLSAVSPEK--MSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~--~~~~l~~~~r~LkpgG~lii~ 184 (564)
+|++......-+... ...+++.+++.|+|||++++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 999965432222122 467899999999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.8e-08 Score=90.22 Aligned_cols=113 Identities=14% Similarity=0.039 Sum_probs=77.7
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 362 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 362 ~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
..+..++.......++.+|||+|||+|.++..++.. ..+|+++|.++.+++.+++|+..++. ..+.+..-|..+.
T Consensus 64 p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~ 138 (212)
T PRK00312 64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGL----HNVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCC----CceEEEECCcccC
Confidence 334455554445567889999999999777655554 35899999999999999999988765 2355554443221
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
. ...++||+|++.-. ...+.+.+.++| +|+| .+++...
T Consensus 139 --~-----~~~~~fD~I~~~~~------~~~~~~~l~~~L-~~gG--------~lv~~~~ 176 (212)
T PRK00312 139 --W-----PAYAPFDRILVTAA------APEIPRALLEQL-KEGG--------ILVAPVG 176 (212)
T ss_pred --C-----CcCCCcCEEEEccC------chhhhHHHHHhc-CCCc--------EEEEEEc
Confidence 0 02358999986543 234456778899 9988 7766654
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.2e-08 Score=93.62 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=90.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHh-cCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 376 AGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTA-NLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~-n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
..++|+|+|||.|+++.++++. ...+++++|.++++++.+++++.. .++. .++.+...|..+.. ..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~---~rV~F~~~Da~~~~-------~~ 192 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS---KRMFFHTADVMDVT-------ES 192 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc---CCcEEEECchhhcc-------cc
Confidence 7789999999988777665542 345899999999999999999864 4442 56787776654321 01
Q ss_pred CCCccEEEEeceeeC-CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--ccCChhHHHHHHHHcCCeEEEEc
Q 008457 452 NEGFEVILGTDVSYI-PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF--RQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~-~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.++||+|+++-++|. .+....+++.+.+.| +|+| .+++-... |..- -...+-..-.||++..++
T Consensus 193 l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~L-kPGG--------~Lvlr~~~G~r~~L-Yp~v~~~~~~gf~~~~~~ 259 (296)
T PLN03075 193 LKEYDVVFLAALVGMDKEEKVKVIEHLGKHM-APGA--------LLMLRSAHGARAFL-YPVVDPCDLRGFEVLSVF 259 (296)
T ss_pred cCCcCEEEEecccccccccHHHHHHHHHHhc-CCCc--------EEEEecccchHhhc-CCCCChhhCCCeEEEEEE
Confidence 358999999844554 489999999999999 9988 66665422 2110 001122223499988876
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-07 Score=93.05 Aligned_cols=145 Identities=18% Similarity=0.149 Sum_probs=88.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhc-CCCCCCCceEEEEe-ecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRL-EWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~i~~~~l-~w~~~~~~~~~~~~~~ 452 (564)
.+.+|||||||+|++..+++++ ...++++||+++.+++.+++|++.| ++. +++.+..- +-. +.+..+ ....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~---~~I~~~~~~~~~--~i~~~i-~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN---GAIRLRLQKDSK--AIFKGI-IHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc---CcEEEEEccchh--hhhhcc-cccC
Confidence 4579999999999787777664 4569999999999999999999999 664 45655421 110 011110 0135
Q ss_pred CCccEEEEeceeeCCCChH-----HHHHHHH----------------HHhhccCCCCC-----------CCCCcEEEEEE
Q 008457 453 EGFEVILGTDVSYIPEAIL-----PLFATAK----------------ELTASSNKSLR-----------EDQQPAFILCH 500 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~-----~l~~~~~----------------~ll~~~~g~~~-----------~~~~~~~~~~~ 500 (564)
++||+|+++...|...... .-.+.++ +++ .++|... -......+.+.
T Consensus 188 ~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~-~~GGe~~fi~~mi~eS~~~~~~~gwftsm 266 (321)
T PRK11727 188 ERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELW-CEGGEVAFIKRMIEESKAFAKQVLWFTSL 266 (321)
T ss_pred CceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhhee-eCCcEeeeehHhhHHHHHHHhhCcEEEEE
Confidence 6899999888777543221 1111121 222 2333100 00112334555
Q ss_pred eeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 501 IFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 501 ~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+......+.+.+++.|..-..+.+.
T Consensus 267 v~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 267 VSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred eeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 556666678888899999966666544
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.5e-08 Score=79.65 Aligned_cols=102 Identities=25% Similarity=0.386 Sum_probs=78.0
Q ss_pred eEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEE
Q 008457 379 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 458 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~I 458 (564)
+|+|+|||+|.+...++.....+++++|.++.+++.++++...+.. ..+.+...++.+... ....+||+|
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~d~i 70 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA----DNVEVLKGDAEELPP------EADESFDVI 70 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc----cceEEEEcChhhhcc------ccCCceEEE
Confidence 5899999999877777665567999999999999988864443332 345666555543311 134689999
Q ss_pred EEeceeeC-CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 008457 459 LGTDVSYI-PEAILPLFATAKELTASSNKSLREDQQPAFILC 499 (564)
Q Consensus 459 i~~d~~y~-~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~ 499 (564)
+++.+++. ......+++.+.+++ +++| .+++.
T Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~l-~~~g--------~~~~~ 103 (107)
T cd02440 71 ISDPPLHHLVEDLARFLEEARRLL-KPGG--------VLVLT 103 (107)
T ss_pred EEccceeehhhHHHHHHHHHHHHc-CCCC--------EEEEE
Confidence 99999888 889999999999999 9987 77665
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.7e-08 Score=102.40 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=80.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCC-cEEEEEeCChHHHHHHHhcc--cc------cCCCeeEEEecCCcccccCCCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHK--DF------TETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~~iD~s~~~l~~a~~~~--~~------~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
+++.+|||||||+|..+..++++ ++ .+++++|+++++++.++++. .. ...+++++.+|....-. -..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~---~~~ 371 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR---KLA 371 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH---hCC
Confidence 56789999999999999998875 44 79999999999999999842 11 23578899999864211 134
Q ss_pred CceeEEEEcccccCCCh---hHHHHHHHHHHhccCCCeEEEEEe
Q 008457 145 SSIDIVTMVFVLSAVSP---EKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~---~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++||+|++.......+. --...+++.+++.|||||.+++..
T Consensus 372 ~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 68999999754332210 112468999999999999998853
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-08 Score=104.39 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=76.3
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..++.+|||+|||+|.++..++... ..+|+++|+|+.|++.++++...++. ++.+...|-.+. . ..+++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-----~ie~I~gDa~dL---p--~~fed 485 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-----SWNVIKGDAINL---S--SSFEK 485 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-----CeEEEEcchHhC---c--cccCC
Confidence 3467899999999997766666543 56999999999999999988765432 233332222111 0 01356
Q ss_pred CCccEEEEeceeeC-------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 453 EGFEVILGTDVSYI-------------PEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~-------------~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
++||+|+++-++.+ ......+++.+.++| +|+| .+++..
T Consensus 486 eSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVL-KPGG--------rLII~D 537 (677)
T PRK06922 486 ESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVL-KPGG--------RIIIRD 537 (677)
T ss_pred CCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHc-CCCc--------EEEEEe
Confidence 78999998765532 246788999999999 9988 777764
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-07 Score=87.75 Aligned_cols=98 Identities=9% Similarity=0.133 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhC---CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAY---PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~---~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
..+.+|||+|||+|.++..++++. +..+|+++|+++.+++.|++... ++.+...|+.... .+++||+|
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----~~~~~~~D~~~~~-----~~~~FDlI 118 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----EATWINADALTTE-----FDTLFDMA 118 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----CCEEEEcchhccc-----ccCCccEE
Confidence 347899999999999999888763 35689999999999999997753 4788888886432 24689999
Q ss_pred EEcccccCCC----------hhHHHHHHHHHHhccCCCeE
Q 008457 151 TMVFVLSAVS----------PEKMSLVLQNIKKVLKPTGY 180 (564)
Q Consensus 151 ~~~~vl~~~~----------~~~~~~~l~~~~r~LkpgG~ 180 (564)
++|=-+.-.. ..-...++..+.+++++|+.
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9965433211 12355688899997777775
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=87.85 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=89.1
Q ss_pred eechhHHHHHHHHhc---CCCCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCce
Q 008457 356 MLWESAHLMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKL 431 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~---~~~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i 431 (564)
+-|+.... .+++.. +...+.+..+||+|||+|++++.+++. ....|+|+|.++.++.++.+|+..+.+. +++
T Consensus 126 PRpETEE~-V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~---g~i 201 (328)
T KOG2904|consen 126 PRPETEEW-VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS---GRI 201 (328)
T ss_pred cCccHHHH-HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc---Cce
Confidence 44554443 344332 334456678999999999999877775 4569999999999999999999999986 777
Q ss_pred EEEEe----ecCCCccchhhhhhcCCCccEEEEeceeeCCC--------------------------ChHHHHHHHHHHh
Q 008457 432 ITKRL----EWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------------------------AILPLFATAKELT 481 (564)
Q Consensus 432 ~~~~l----~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~l~~~~~~ll 481 (564)
.+.++ +|.... ++..++.|+|+++...-... .+-.+..-..+.|
T Consensus 202 ~v~~~~me~d~~~~~------~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L 275 (328)
T KOG2904|consen 202 EVIHNIMESDASDEH------PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML 275 (328)
T ss_pred EEEeccccccccccc------ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc
Confidence 77755 343321 23457999999775422221 2344555666777
Q ss_pred hccCCCCCCCCCcEEEEEEeeccCC
Q 008457 482 ASSNKSLREDQQPAFILCHIFRQVD 506 (564)
Q Consensus 482 ~~~~g~~~~~~~~~~~~~~~~r~~~ 506 (564)
+++| .+.+....+..+
T Consensus 276 -q~gg--------~~~le~~~~~~~ 291 (328)
T KOG2904|consen 276 -QPGG--------FEQLELVERKEH 291 (328)
T ss_pred -ccCC--------eEEEEecccccC
Confidence 7766 666666655444
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.7e-08 Score=90.14 Aligned_cols=112 Identities=18% Similarity=0.231 Sum_probs=87.3
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEE-ecCCcccccCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFV-CDLISDDLSRQIS 143 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~-~d~~~~~~~~~~~ 143 (564)
.-++...++++|||||++.|.-+.+++...| +.+++.+|+++++.+.|++.+...+ .++.... +|.... +. ...
T Consensus 52 ~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~-l~-~~~ 129 (219)
T COG4122 52 RLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV-LS-RLL 129 (219)
T ss_pred HHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-HH-hcc
Confidence 3344457899999999999999999999977 7899999999999999999887654 3466666 355322 11 245
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.++||+|+.-.. +.+...++..+.++|+|||.+++-..
T Consensus 130 ~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 130 DGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred CCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 689999998432 34567899999999999999998543
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.2e-08 Score=88.27 Aligned_cols=103 Identities=20% Similarity=0.240 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
...|.+||||-||+|+++..++++++.+|+++|.|..++..+++|++.-+.. ....+...| ....+......
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~---~~~~~~~~d-----a~~~L~~~~~~ 112 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE---GEARVLRND-----ALRALKQLGTR 112 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc---cceEEEeec-----HHHHHHhcCCC
Confidence 3689999999999999999999999999999999999999999999887654 233333222 11222222222
Q ss_pred -CccEEEEeceeeCCCChHHHHHHHH----HHhhccCC
Q 008457 454 -GFEVILGTDVSYIPEAILPLFATAK----ELTASSNK 486 (564)
Q Consensus 454 -~fD~Ii~~d~~y~~~~~~~l~~~~~----~ll~~~~g 486 (564)
.||+|. .|..|.....+..+..+. .+| ++++
T Consensus 113 ~~FDlVf-lDPPy~~~l~~~~~~~~~~~~~~~L-~~~~ 148 (187)
T COG0742 113 EPFDLVF-LDPPYAKGLLDKELALLLLEENGWL-KPGA 148 (187)
T ss_pred CcccEEE-eCCCCccchhhHHHHHHHHHhcCCc-CCCc
Confidence 499876 799999877765555555 567 7765
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.3e-08 Score=92.56 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCccccHHHH----HHhCC-----CcEEEEEeCChHHHHHHHhccc-------------------cc----
Q 008457 75 GRKDVLEVGCGAGNTIFPL----IAAYP-----DVFVYACDFSPRAVNLVMTHKD-------------------FT---- 122 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l----~~~~~-----~~~v~~iD~s~~~l~~a~~~~~-------------------~~---- 122 (564)
...+|+.+||++|.-...+ .+..+ .++|+|+|+|..+++.|+.-.- ..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4889999999999655444 34443 5899999999999999986210 00
Q ss_pred -------CCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 123 -------ETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 123 -------~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
...|.|...|+..+.. ..+.||+|+|.+||.++..+...+++..++..|+|||+|++.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~----~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP----FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc----ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 0246677777755431 457799999999999999889999999999999999999984
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=8e-08 Score=90.10 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=89.5
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHH-HHHHHHhcCCCCCCCceEEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDL-LAQNVTANLKPPFLAKLITK 434 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~-~~~n~~~n~~~~~~~~i~~~ 434 (564)
.++.++..|...+......+++++|||+|||||+++..++..++.+|+++|.++.++.. +++|...-.. +...+.
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~----~~~ni~ 130 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL----ERTNIR 130 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe----ecCCcc
Confidence 55678888888888776567899999999999999999988888899999999976654 4443211000 111222
Q ss_pred EeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee------------
Q 008457 435 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF------------ 502 (564)
Q Consensus 435 ~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~------------ 502 (564)
.++|.+. ..|++ .+|+.+.. +..++..+..+| ++ | .+++-.++
T Consensus 131 ~~~~~~~------------~~d~~-~~DvsfiS--~~~~l~~i~~~l-~~-~--------~~~~L~KPqFE~~~~~~~~~ 185 (228)
T TIGR00478 131 YVTPADI------------FPDFA-TFDVSFIS--LISILPELDLLL-NP-N--------DLTLLFKPQFEAGREKKNKK 185 (228)
T ss_pred cCCHhHc------------CCCce-eeeEEEee--hHhHHHHHHHHh-Cc-C--------eEEEEcChHhhhcHhhcCcC
Confidence 4445432 12433 34544433 233588888888 77 5 22222222
Q ss_pred --------ccCChhHHHHHHHHcCCeEEEEcC
Q 008457 503 --------RQVDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 503 --------r~~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
+......+...+.+.||.+..+..
T Consensus 186 giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 186 GVVRDKEAIALALHKVIDKGESPDFQEKKIIF 217 (228)
T ss_pred CeecCHHHHHHHHHHHHHHHHcCCCeEeeEEE
Confidence 111123566677788999988763
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.6e-08 Score=91.21 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=106.3
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchh
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
-++.+...+.++.|||+|||+|.++..++..++++|.+++-+ +|.+.+++-++.|++. ++|.+..-...+.
T Consensus 168 Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~---~rItVI~GKiEdi----- 238 (517)
T KOG1500|consen 168 AILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLA---DRITVIPGKIEDI----- 238 (517)
T ss_pred HHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCcc---ceEEEccCccccc-----
Confidence 345566778999999999999988888888899999999995 7999999999999775 6677665444332
Q ss_pred hhhhcCCCccEEEEec---eeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----cCChhHHHHHHHHcCC
Q 008457 447 IKEENNEGFEVILGTD---VSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR----QVDEPSMLSAATQCGF 519 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d---~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r----~~~~~~~~~~~~~~g~ 519 (564)
+ .+++.|+||+-. ++++...++..+..- +.| +|+| ..+-+...- --++..+.+...++.|
T Consensus 239 --e-LPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l-~P~G--------kMfPT~gdiHlAPFsDE~Ly~E~~nkAnF 305 (517)
T KOG1500|consen 239 --E-LPEKVDVIISEPMGYMLVNERMLESYLHAR-KWL-KPNG--------KMFPTVGDIHLAPFSDEQLYVEQFNKANF 305 (517)
T ss_pred --c-CchhccEEEeccchhhhhhHHHHHHHHHHH-hhc-CCCC--------cccCcccceeecccchHHHHHHHHhhhhh
Confidence 1 246899999654 467777777777554 899 9988 333222211 1123345677777777
Q ss_pred eEEEEcCCCCCCCCccccccccccCCCCcccCCCC
Q 008457 520 RLVDKWPSKNSASPSESIISSWFSENGHEVYLPSP 554 (564)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (564)
+....+- ..-..=+-...+++.||-|
T Consensus 306 WyQq~fy---------GVdLt~L~g~a~~eYFrQP 331 (517)
T KOG1500|consen 306 WYQQNFY---------GVDLTPLYGSAHQEYFRQP 331 (517)
T ss_pred hhhhccc---------cccchhhhhhhhhhhhccc
Confidence 7766541 1101112256677777765
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.4e-08 Score=98.00 Aligned_cols=123 Identities=12% Similarity=0.074 Sum_probs=85.0
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
.+.+|||||||+|.++..++.. +.+|+++|+++.+++.+++|+..|+. .++.+...|..+. +.. ...+|
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~----~~~~~~~~d~~~~-----~~~-~~~~~ 301 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGL----DNLSFAALDSAKF-----ATA-QMSAP 301 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCC----CcEEEEECCHHHH-----HHh-cCCCC
Confidence 5679999999999888777765 47899999999999999999999886 2466655443211 111 12369
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
|+|+. |..|. .....+++.+.. + +|++ .+|++........ + +..+ .|++++++-
T Consensus 302 D~vi~-DPPr~-G~~~~~l~~l~~-~-~p~~--------ivyvsc~p~TlaR-D-l~~L--~gy~l~~~~ 355 (374)
T TIGR02085 302 ELVLV-NPPRR-GIGKELCDYLSQ-M-APKF--------ILYSSCNAQTMAK-D-IAEL--SGYQIERVQ 355 (374)
T ss_pred CEEEE-CCCCC-CCcHHHHHHHHh-c-CCCe--------EEEEEeCHHHHHH-H-HHHh--cCceEEEEE
Confidence 98775 66664 456677777754 4 5655 8888866554332 2 2233 589999875
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.74 E-value=9e-08 Score=90.75 Aligned_cols=149 Identities=19% Similarity=0.340 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-----------------------------CC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----------------------------ET 124 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-----------------------------~~ 124 (564)
.++.++||||||.-..-..-+... --+++..|+++..++..++..... ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 457899999999854422112111 246999999999887665422110 01
Q ss_pred Ce-eEEEecCCcccccCC-C-CCCceeEEEEcccccCCC--hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccc
Q 008457 125 RV-STFVCDLISDDLSRQ-I-SPSSIDIVTMVFVLSAVS--PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGK 199 (564)
Q Consensus 125 ~i-~~~~~d~~~~~~~~~-~-~~~~fD~V~~~~vl~~~~--~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~ 199 (564)
.| +++.+|+.+...-.+ . ...+||+|++.++|+... .+....+++++.++|||||.|++......
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~---------- 203 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS---------- 203 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-----------
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc----------
Confidence 23 366788876543212 0 123599999999999764 57788999999999999999998754321
Q ss_pred ccccccceeecCCC-ceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 200 DQKISENFYVRGDG-TRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 200 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
.+|..+.. .....++.+.+++.++++||.++...
T Consensus 204 ------t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 204 ------TYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ------SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ------eeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 22333222 23346799999999999999998776
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=81.08 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=104.5
Q ss_pred ccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCc
Q 008457 57 FKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS 135 (564)
Q Consensus 57 ~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~ 135 (564)
..+..++.+.....+....+..|||+|.|||-++..++++ .+...+++++.|++.....+++.. .+.++.+|+..
T Consensus 30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----~~~ii~gda~~ 105 (194)
T COG3963 30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----GVNIINGDAFD 105 (194)
T ss_pred cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----Cccccccchhh
Confidence 3456677788888888889999999999999999999888 345679999999999999988764 34577788765
Q ss_pred ccc-cCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 136 DDL-SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 136 ~~~-~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.+. ...+++..||.|+|.--+-.+|.....+.|+++...|.+||.++-..++
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 541 1134677899999999888898888899999999999999999887665
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-08 Score=96.42 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=75.4
Q ss_pred CCCeEEEeCCcccH----HHHHHHhcC------CCEEEEEcCChhHHHHHHHHHHh----cCCCC---------------
Q 008457 376 AGKKVLELGCGCGG----ICSMVAAGS------ADLVVATDGDSIALDLLAQNVTA----NLKPP--------------- 426 (564)
Q Consensus 376 ~~~~vLelG~G~G~----l~~~~~~~~------~~~v~~tD~~~~~l~~~~~n~~~----n~~~~--------------- 426 (564)
++.+|+|+|||||- ++..++... ..+|++||+|+.|++.+++++-. .+.+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999994 344444332 34899999999999999976421 11110
Q ss_pred ----CCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 427 ----FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 427 ----~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
....+.+...|..+. +.+.++||+|++..++.+. .....+++.+.++| +|+| .+++.+
T Consensus 179 v~~~ir~~V~F~~~dl~~~-------~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L-~pGG--------~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAE-------SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEAL-KPGG--------YLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCC-------CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHh-CCCe--------EEEEEC
Confidence 012345554444332 1235789999999887654 45668999999999 9998 777764
Q ss_pred ee
Q 008457 501 IF 502 (564)
Q Consensus 501 ~~ 502 (564)
..
T Consensus 243 ~E 244 (264)
T smart00138 243 SE 244 (264)
T ss_pred cc
Confidence 44
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.1e-08 Score=98.51 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=78.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+|||+|.++...+.. ...+|+++|+|+.+++.|+++....+ .+++++++|+........-..++||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 46789999999999998776554 24589999999999999999876543 368899999864211001124589999
Q ss_pred EEcccccCCCh-------hHHHHHHHHHHhccCCCeEEEEEe
Q 008457 151 TMVFVLSAVSP-------EKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 151 ~~~~vl~~~~~-------~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++.--...-+. .....++..+.++|+|||.++...
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99633211111 234556667889999999998753
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.6e-08 Score=107.20 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=96.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|+++....+ .+++++++|+.+..- . ..++||+|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~--~-~~~~fDlI 612 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLK--E-AREQFDLI 612 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHH--H-cCCCcCEE
Confidence 357899999999999999998862 3479999999999999999876443 368999999854211 1 14689999
Q ss_pred EEccc-cc------CC--ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCH
Q 008457 151 TMVFV-LS------AV--SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 151 ~~~~v-l~------~~--~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (564)
++.-- +. .. ...+...++..+.++|+|||.+++..-.. .++.
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-----------------------------~~~~ 663 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-----------------------------GFKM 663 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-----------------------------cCCh
Confidence 99421 10 00 12356678889999999999998753211 0111
Q ss_pred HHHHHHHHhCCCcEEEeeeeec
Q 008457 222 DFLTSLFKENGFDVEELGLCCK 243 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~~~~~~~ 243 (564)
..+.+.++|+.+..+.....
T Consensus 664 --~~~~~~~~g~~~~~i~~~~~ 683 (702)
T PRK11783 664 --DEEGLAKLGLKAEEITAKTL 683 (702)
T ss_pred --hHHHHHhCCCeEEEEecCCC
Confidence 15778889998887765443
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-07 Score=93.65 Aligned_cols=123 Identities=12% Similarity=0.068 Sum_probs=80.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++|+..|++ .++++...|..+. .....+.|
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l----~~v~~~~~D~~~~------~~~~~~~~ 241 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL----TNVQFQALDSTQF------ATAQGEVP 241 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC----CceEEEEcCHHHH------HHhcCCCC
Confidence 56899999999998887777654 7999999999999999999999886 3466655443211 11123479
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
|+|+.. ..+. .....+++.+.. + ++ ...+|++........ + +..+ .|+++.++-
T Consensus 242 D~Vv~d-PPr~-G~~~~~~~~l~~-~-~~--------~~ivyvsc~p~t~~r-d-~~~l--~~y~~~~~~ 295 (315)
T PRK03522 242 DLVLVN-PPRR-GIGKELCDYLSQ-M-AP--------RFILYSSCNAQTMAK-D-LAHL--PGYRIERVQ 295 (315)
T ss_pred eEEEEC-CCCC-CccHHHHHHHHH-c-CC--------CeEEEEECCcccchh-H-Hhhc--cCcEEEEEE
Confidence 998854 3332 233444444433 2 33 337777766655432 2 2333 589888875
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.8e-07 Score=83.17 Aligned_cols=134 Identities=19% Similarity=0.191 Sum_probs=92.5
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc-C------CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccch
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG-S------ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE 445 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~-~------~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~ 445 (564)
....+.+|||++||||-++..++.. . ..+|+..|+||+++...++....-.+... . .+.|...+ .+
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~-~-----~~~w~~~d-AE 169 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKAS-S-----RVEWVEGD-AE 169 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcC-C-----ceEEEeCC-cc
Confidence 4457799999999999666555542 2 26899999999999999988766444311 1 23343321 22
Q ss_pred hhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEE
Q 008457 446 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 446 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
.+ ++++..||....+=-|-+..+++..+++..|+| ||+| +|+ |..........+.....++-|.|..+
T Consensus 170 ~L-pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVL-KpGG--------rf~-cLeFskv~~~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 170 DL-PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVL-KPGG--------RFS-CLEFSKVENEPLKWFYDQYSFDVLPV 237 (296)
T ss_pred cC-CCCCCcceeEEEecceecCCCHHHHHHHHHHhc-CCCc--------EEE-EEEccccccHHHHHHHHhhhhhhhch
Confidence 22 477889999999988999999999999999999 9988 655 44443333223333334556666544
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-08 Score=89.96 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccc--ccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDD--LSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~~fD 148 (564)
.+..+||||||++|.-+..+++..| +++|+.+|++++..+.|++.+...+ .+|+++.+|....- +....+.++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 5788999999999999999998765 6899999999999999998776443 68999999875321 11011246899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|+.-.- ..+...++..+.++|+|||.+++-.
T Consensus 124 ~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 124 FVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEEccc-----ccchhhHHHHHhhhccCCeEEEEcc
Confidence 9999553 3466778899999999999999854
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.1e-07 Score=86.87 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=82.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+.++|||||||+|.++..++... ..+|+++|+++++++.+++++..+... .++++..-|.. +.+. ....+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~---~rv~v~~~Da~-----~~l~-~~~~~ 136 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG---ERFEVIEADGA-----EYIA-VHRHS 136 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC---CceEEEECCHH-----HHHH-hCCCC
Confidence 46789999999998887776654 468999999999999999998654332 45655543321 1111 12458
Q ss_pred ccEEEEeceeeCCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHc
Q 008457 455 FEVILGTDVSYIPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC 517 (564)
Q Consensus 455 fD~Ii~~d~~y~~~------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 517 (564)
||+|+. |. |+.. ....+++.+.++| +|+| ++++....+......+++.+++.
T Consensus 137 yD~I~~-D~-~~~~~~~~~l~t~efl~~~~~~L-~pgG--------vlvin~~~~~~~~~~~l~~l~~~ 194 (262)
T PRK04457 137 TDVILV-DG-FDGEGIIDALCTQPFFDDCRNAL-SSDG--------IFVVNLWSRDKRYDRYLERLESS 194 (262)
T ss_pred CCEEEE-eC-CCCCCCccccCcHHHHHHHHHhc-CCCc--------EEEEEcCCCchhHHHHHHHHHHh
Confidence 999985 43 3322 2378999999999 9988 77765444433334566666543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-07 Score=90.18 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=85.3
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccc--ccCCCCCC
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDD--LSRQISPS 145 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~ 145 (564)
+...++.+|||||+|+|..+..++... ++.+|+++|.+++..+.|++.++..+ ++++++.+|+...- +...-..+
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 334678999999999999999999864 36789999999999999999876554 57999999875421 10011236
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+||+|+.-.- ......+++.+.++|+|||.+++-.
T Consensus 194 ~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 194 SYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred CCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 8999998442 3567789999999999999998853
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-07 Score=91.57 Aligned_cols=105 Identities=17% Similarity=0.097 Sum_probs=70.9
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
+..++.+...+.++.+|||+|||+|.++..++.... .+|+++|.++++++.+++|+..++. .++.+..-|....
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~----~nV~~i~gD~~~~ 143 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI----ENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC----CcEEEEeCChhhc
Confidence 333444444555788999999999988877776543 3799999999999999999998775 2344443332111
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
. ....+||+|+.+-. ...+...+.+.| +++|
T Consensus 144 -----~--~~~~~fD~Ii~~~g------~~~ip~~~~~~L-kpgG 174 (322)
T PRK13943 144 -----V--PEFAPYDVIFVTVG------VDEVPETWFTQL-KEGG 174 (322)
T ss_pred -----c--cccCCccEEEECCc------hHHhHHHHHHhc-CCCC
Confidence 0 11247999986522 223345567789 8887
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.1e-07 Score=82.54 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=91.1
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEccc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFV 155 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~v 155 (564)
..++|||||=+...... ..+-..|+.||+++. .-.+.+.|+..-.++. -+.++||+|.+..|
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------------~~~I~qqDFm~rplp~-~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------------HPGILQQDFMERPLPK-NESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------------CCCceeeccccCCCCC-CcccceeEEEEEEE
Confidence 47999999976554332 233567999999772 1235567775432221 24679999999999
Q ss_pred ccCCC-hhHHHHHHHHHHhccCCCeE-----EEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHH
Q 008457 156 LSAVS-PEKMSLVLQNIKKVLKPTGY-----VLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFK 229 (564)
Q Consensus 156 l~~~~-~~~~~~~l~~~~r~LkpgG~-----lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 229 (564)
|.++| +.....+++++.+.|+|+|. |++..+.+- -....|++.+.|..+++
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C-----------------------v~NSRy~~~~~l~~im~ 170 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC-----------------------VTNSRYMTEERLREIME 170 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH-----------------------hhcccccCHHHHHHHHH
Confidence 99998 67888999999999999999 777644321 12233678999999999
Q ss_pred hCCCcEEEeeee
Q 008457 230 ENGFDVEELGLC 241 (564)
Q Consensus 230 ~aGf~~~~~~~~ 241 (564)
..||..++....
T Consensus 171 ~LGf~~~~~~~~ 182 (219)
T PF11968_consen 171 SLGFTRVKYKKS 182 (219)
T ss_pred hCCcEEEEEEec
Confidence 999998876443
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.2e-09 Score=97.48 Aligned_cols=134 Identities=22% Similarity=0.241 Sum_probs=89.6
Q ss_pred CccceechhHHHHHHHHhcC---CCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHH-HHHHhcCCCC-
Q 008457 352 STGLMLWESAHLMAAVLARN---PTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLA-QNVTANLKPP- 426 (564)
Q Consensus 352 ~~G~~~W~~~~~l~~~l~~~---~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~-~n~~~n~~~~- 426 (564)
-.|+++|.++..|..++... .-.+.+++|||||||+|..++.+...+...|++.|+|.+.++... -|+..|....
T Consensus 89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~ 168 (282)
T KOG2920|consen 89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGV 168 (282)
T ss_pred ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhh
Confidence 35899999999999999854 345689999999999994444455556689999999998884322 3333332211
Q ss_pred ----CCCceEEEEe---ecCCCccchhhhhhcCC--CccEEEEeceeeCCCChHHH-HHHHHHHhhccCCCCCCCCCcEE
Q 008457 427 ----FLAKLITKRL---EWGNRDHIEAIKEENNE--GFEVILGTDVSYIPEAILPL-FATAKELTASSNKSLREDQQPAF 496 (564)
Q Consensus 427 ----~~~~i~~~~l---~w~~~~~~~~~~~~~~~--~fD~Ii~~d~~y~~~~~~~l-~~~~~~ll~~~~g~~~~~~~~~~ 496 (564)
......+..- ||.. ...+ +||+|+++.++|.....+.+ ..+...++ ++.| ++
T Consensus 169 ~~~e~~~~~~i~~s~l~dg~~---------~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~-~~D~--------~~ 230 (282)
T KOG2920|consen 169 EEKENHKVDEILNSLLSDGVF---------NHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLL-KTDG--------VF 230 (282)
T ss_pred hhhhcccceeccccccccchh---------hhccccchhhhhhhhhhhCcchhhhhHhhhhhhcC-Cccc--------hh
Confidence 0001111111 4411 1123 89999999999999999888 66666666 7766 66
Q ss_pred EEEEeec
Q 008457 497 ILCHIFR 503 (564)
Q Consensus 497 ~~~~~~r 503 (564)
+++.+.-
T Consensus 231 ~~aAK~~ 237 (282)
T KOG2920|consen 231 YVAAKKL 237 (282)
T ss_pred hhhhHhh
Confidence 6665543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.1e-08 Score=91.42 Aligned_cols=137 Identities=19% Similarity=0.289 Sum_probs=96.2
Q ss_pred HHhHhHHHHHHhhccccccccchhHHHHhhhcc-CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhc
Q 008457 40 EAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFS-GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH 118 (564)
Q Consensus 40 ~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~ 118 (564)
..++|-..+|......|-.+....-.....++. ...+..++|+|||.|..+. .+|.+.++|+|++...+..+++.
T Consensus 9 leqeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~ 84 (293)
T KOG1331|consen 9 LEQEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS 84 (293)
T ss_pred HHHHHhHHHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC
Confidence 344454445544444443333321122223322 2458999999999997743 34788899999999999888765
Q ss_pred ccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 119 KDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 119 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
.. .....+|+.. .|+++.+||.+++..++||++ ......+++++.|.|+|||..++..+...
T Consensus 85 ~~-----~~~~~ad~l~----~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 85 GG-----DNVCRADALK----LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred CC-----ceeehhhhhc----CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 32 1344566643 377899999999999999997 56677899999999999999999877653
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.1e-08 Score=89.53 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=64.6
Q ss_pred eEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEE
Q 008457 379 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 458 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~I 458 (564)
.++|+|||+| .+...++...++|++||.++.||+.+++.-...-.. -.... .++ +...|. -.++++|+|
T Consensus 36 ~a~DvG~G~G-qa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~---t~~~m-----s~~-~~v~L~-g~e~SVDlI 104 (261)
T KOG3010|consen 36 LAWDVGTGNG-QAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCH---TPSTM-----SSD-EMVDLL-GGEESVDLI 104 (261)
T ss_pred eEEEeccCCC-cchHHHHHhhhhheeecCCHHHHHHhhcCCCccccc---CCccc-----ccc-cccccc-CCCcceeee
Confidence 8999999999 666666666789999999999999887642221110 00111 111 111111 126799999
Q ss_pred EEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 459 LGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 459 i~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+++.|++. -+++.+.+.++++|+++||
T Consensus 105 ~~Aqa~HW-Fdle~fy~~~~rvLRk~Gg 131 (261)
T KOG3010|consen 105 TAAQAVHW-FDLERFYKEAYRVLRKDGG 131 (261)
T ss_pred hhhhhHHh-hchHHHHHHHHHHcCCCCC
Confidence 99998755 4589999999999944443
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-07 Score=89.96 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=73.0
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh-h
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-E 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-~ 450 (564)
..+.++|||+|||+|..+..++.. ...+|+++|.++++++.+++|++.+++. +++++..-+..+. +..+.. .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~---~~i~~~~gda~~~--L~~l~~~~ 140 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD---HKINFIQSDALSA--LDQLLNND 140 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEccHHHH--HHHHHhCC
Confidence 346789999999999544433332 3569999999999999999999999875 5676665554321 111111 1
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..++||+|+. |.- ...+..++..+.++| +|+|
T Consensus 141 ~~~~fD~Vfi-Da~--k~~y~~~~~~~~~ll-~~GG 172 (234)
T PLN02781 141 PKPEFDFAFV-DAD--KPNYVHFHEQLLKLV-KVGG 172 (234)
T ss_pred CCCCCCEEEE-CCC--HHHHHHHHHHHHHhc-CCCe
Confidence 2458999874 432 356678889999999 9987
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.6e-08 Score=88.01 Aligned_cols=110 Identities=25% Similarity=0.323 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc----CCCeeEEEecCCcccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
..+.+|||+|||+|..+..++...+..+|+..|.++ .++..+.+...+ ..++.+...|.........+...+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 678999999999999888888875678999999988 888887776543 366778777765422111224568999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
|++..+++.- +....+++-+.++|+|+|.+++...
T Consensus 123 IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999999875 6788899999999999998777643
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=98.80 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=77.4
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|+++....+ .+++++.+|+.......++.+++
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 34444456789999999999999999987 4689999999999999998765433 57899999985421111223467
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
||+|++.--=.-+ ...+++.+.+ ++|++.++++
T Consensus 363 ~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 363 PDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEc
Confidence 9999973321111 2345555554 8899988775
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=86.01 Aligned_cols=141 Identities=15% Similarity=0.148 Sum_probs=101.2
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhCCCc-EEEEEeCChHHHHHHHhcccc---cCCCeeEEEecCCcccccCCCCCCc
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDV-FVYACDFSPRAVNLVMTHKDF---TETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~~iD~s~~~l~~a~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
..+..+.+|||...|-|..+...+++ |. +|+.++.++..++.|.-+.-. ...+++.+.+|..+ .-..|++++
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--~V~~~~D~s 205 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--VVKDFDDES 205 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--HHhcCCccc
Confidence 34467999999999999999998888 55 999999999999999876421 12467888998743 334678999
Q ss_pred eeEEEEcc-cccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 147 IDIVTMVF-VLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 147 fD~V~~~~-vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
||+|+--- -|.+-..---..+.++++|+|||||.++-.+-++.... . +.. -...+.
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry----r---------------G~d----~~~gVa 262 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY----R---------------GLD----LPKGVA 262 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc----c---------------cCC----hhHHHH
Confidence 99998611 11111111345799999999999999987655543210 0 000 256778
Q ss_pred HHHHhCCCcEEEe
Q 008457 226 SLFKENGFDVEEL 238 (564)
Q Consensus 226 ~~l~~aGf~~~~~ 238 (564)
+.|+++||.+++.
T Consensus 263 ~RLr~vGF~~v~~ 275 (287)
T COG2521 263 ERLRRVGFEVVKK 275 (287)
T ss_pred HHHHhcCceeeee
Confidence 8999999997653
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.65 E-value=7e-07 Score=93.55 Aligned_cols=145 Identities=14% Similarity=0.050 Sum_probs=94.7
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
.+..|.+.+.......++.+|||||||+|.++..++. .+.+|+++|+++.+++.+++|+..|+. .++.+...|+.
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~-~~~~V~~vE~~~~av~~a~~n~~~~~~----~nv~~~~~d~~ 350 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAK-QAKSVVGIEVVPESVEKAQQNAELNGI----ANVEFLAGTLE 350 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHH-hCCEEEEEEcCHHHHHHHHHHHHHhCC----CceEEEeCCHH
Confidence 3444555555544444668999999999988777665 456899999999999999999999886 35666655542
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCC
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF 519 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~ 519 (564)
+. +..+ ...+.+||+|+. |..+. .....+++.+.+ + ++++ .+|++...... ..-+..+.+.|+
T Consensus 351 ~~--l~~~-~~~~~~~D~vi~-dPPr~-G~~~~~l~~l~~-l-~~~~--------ivyvsc~p~tl--ard~~~l~~~gy 413 (431)
T TIGR00479 351 TV--LPKQ-PWAGQIPDVLLL-DPPRK-GCAAEVLRTIIE-L-KPER--------IVYVSCNPATL--ARDLEFLCKEGY 413 (431)
T ss_pred HH--HHHH-HhcCCCCCEEEE-CcCCC-CCCHHHHHHHHh-c-CCCE--------EEEEcCCHHHH--HHHHHHHHHCCe
Confidence 21 1111 122457999874 55543 335667776665 5 5544 77776544332 233555667789
Q ss_pred eEEEEcC
Q 008457 520 RLVDKWP 526 (564)
Q Consensus 520 ~~~~~~~ 526 (564)
++..+..
T Consensus 414 ~~~~~~~ 420 (431)
T TIGR00479 414 GITWVQP 420 (431)
T ss_pred eEEEEEE
Confidence 8888753
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.5e-07 Score=95.37 Aligned_cols=130 Identities=17% Similarity=0.145 Sum_probs=84.2
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.++.+|||+|||+|+.+..++.... .+|+++|.++.+++.+++|+..++.. +.+...|..+. .. .....
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-----~~~~~~D~~~~---~~--~~~~~ 312 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-----ATVIVGDARDP---AQ--WWDGQ 312 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEcCcccc---hh--hcccC
Confidence 4788999999999998888887654 69999999999999999999988752 33433333211 00 12345
Q ss_pred CccEEEEeceeeC---------------CC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE--eeccCChhH
Q 008457 454 GFEVILGTDVSYI---------------PE-------AILPLFATAKELTASSNKSLREDQQPAFILCH--IFRQVDEPS 509 (564)
Q Consensus 454 ~fD~Ii~~d~~y~---------------~~-------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~--~~r~~~~~~ 509 (564)
+||.|+..-.... .+ ....+++.+.++| +|+| .++.+. ..+.+.+..
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L-kpGG--------~lvystcs~~~~Ene~~ 383 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL-KPGG--------TLLYATCSILPEENEQQ 383 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc-CCCC--------EEEEEeCCCChhhCHHH
Confidence 7999984322111 01 1236889999999 9988 555443 334444433
Q ss_pred HHHHHHHc-CCeEEE
Q 008457 510 MLSAATQC-GFRLVD 523 (564)
Q Consensus 510 ~~~~~~~~-g~~~~~ 523 (564)
+...+++. +|++..
T Consensus 384 v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 384 IKAFLARHPDAELLD 398 (427)
T ss_pred HHHHHHhCCCCEEec
Confidence 34444443 676554
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-07 Score=95.19 Aligned_cols=102 Identities=12% Similarity=0.033 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....+ .+++|+++|+..... . ..+.||+|++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~--~-~~~~~D~Vv~ 246 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT--A-QGEVPDLVLV 246 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH--h-cCCCCeEEEE
Confidence 45789999999999999999986 6799999999999999998865443 468999999854321 1 2357999998
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.-- .......+.++...++|++.++++.
T Consensus 247 dPP-----r~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 247 NPP-----RRGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCC-----CCCccHHHHHHHHHcCCCeEEEEEC
Confidence 622 2222223333344478888888763
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-07 Score=81.61 Aligned_cols=120 Identities=15% Similarity=0.205 Sum_probs=80.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
...-|||||||+| +++..+...+...+++|+|+.|++.+.+. +..+ ....-|-+.. .++.++.|
T Consensus 50 ~~~~iLDIGCGsG-LSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~eg--------dlil~DMG~G------lpfrpGtF 113 (270)
T KOG1541|consen 50 KSGLILDIGCGSG-LSGSVLSDSGHQWIGVDISPSMLEQAVER-ELEG--------DLILCDMGEG------LPFRPGTF 113 (270)
T ss_pred CCcEEEEeccCCC-cchheeccCCceEEeecCCHHHHHHHHHh-hhhc--------CeeeeecCCC------CCCCCCcc
Confidence 5778999999999 77666665568899999999999998862 2211 1122233322 25678999
Q ss_pred cEEEEecee---eC------C--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh-hHHHHHHHHcCCe
Q 008457 456 EVILGTDVS---YI------P--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PSMLSAATQCGFR 520 (564)
Q Consensus 456 D~Ii~~d~~---y~------~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~g~~ 520 (564)
|-+|+--.+ .| . .-+-.++.++..+| +.++ ++++.++..+... +.+.+.+.++||.
T Consensus 114 Dg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l-~rg~--------raV~QfYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 114 DGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCL-KRGA--------RAVLQFYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred ceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhh-ccCc--------eeEEEecccchHHHHHHHHHHHhhccC
Confidence 988754322 22 1 12344688899999 8765 7777777776654 5566777777764
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.3e-07 Score=94.50 Aligned_cols=114 Identities=19% Similarity=0.150 Sum_probs=78.2
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~ 433 (564)
.+++.+..++..++. ..++.+|||+|||+|+.+..++.. ...+|+++|+++.+++.+++|+..++. ..+.+
T Consensus 233 ~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~----~~v~~ 305 (445)
T PRK14904 233 SVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI----TIIET 305 (445)
T ss_pred EEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC----CeEEE
Confidence 556544444444443 347789999999999888776653 245899999999999999999998776 34566
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEEeceeeCC----------------C-------ChHHHHHHHHHHhhccCC
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP----------------E-------AILPLFATAKELTASSNK 486 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~----------------~-------~~~~l~~~~~~ll~~~~g 486 (564)
...|..+. .+..+||+|+. |+.+.. + ....++..+.++| +|+|
T Consensus 306 ~~~Da~~~--------~~~~~fD~Vl~-D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l-kpgG 371 (445)
T PRK14904 306 IEGDARSF--------SPEEQPDAILL-DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLL-KPGG 371 (445)
T ss_pred EeCccccc--------ccCCCCCEEEE-cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 55444321 12457999983 332211 1 1235899999999 9988
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.1e-07 Score=95.49 Aligned_cols=141 Identities=22% Similarity=0.216 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
+..++.++. ..++.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|+..++.. .+.+...|.
T Consensus 239 s~lv~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~----~v~~~~~D~ 310 (444)
T PRK14902 239 SMLVAPALD----PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT----NIETKALDA 310 (444)
T ss_pred HHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeCCc
Confidence 444555442 2367899999999998888877653 569999999999999999999998763 366665555
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCC----------------CC-------hHHHHHHHHHHhhccCCCCCCCCCcE
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIP----------------EA-------ILPLFATAKELTASSNKSLREDQQPA 495 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~----------------~~-------~~~l~~~~~~ll~~~~g~~~~~~~~~ 495 (564)
.+.. . .+. ++||+|++ |..+.. .. ...+++.+.++| +|+| .
T Consensus 311 ~~~~--~---~~~-~~fD~Vl~-D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~L-kpGG--------~ 374 (444)
T PRK14902 311 RKVH--E---KFA-EKFDKILV-DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYL-KKGG--------I 374 (444)
T ss_pred cccc--c---hhc-ccCCEEEE-cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHc-CCCC--------E
Confidence 4321 0 112 58999984 332211 01 135788899999 9988 5
Q ss_pred EEEEEee--ccCChhHHHHHHHHc-CCeEEEEc
Q 008457 496 FILCHIF--RQVDEPSMLSAATQC-GFRLVDKW 525 (564)
Q Consensus 496 ~~~~~~~--r~~~~~~~~~~~~~~-g~~~~~~~ 525 (564)
++.+... ..+.+..+...+++. +|+++.+.
T Consensus 375 lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~ 407 (444)
T PRK14902 375 LVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQ 407 (444)
T ss_pred EEEEcCCCChhhhHHHHHHHHHhCCCcEEeccc
Confidence 5543322 223333333444444 47776654
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-07 Score=88.68 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=70.2
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||+|||+|+.+..++... ...|+++|+++.+++.+++|+..++. .++.+...|.... ....
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~----~~v~~~~~D~~~~-------~~~~ 138 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV----LNVAVTNFDGRVF-------GAAV 138 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC----CcEEEecCCHHHh-------hhhc
Confidence 377899999999999888877653 35899999999999999999999876 2455554443211 1123
Q ss_pred CCccEEEEeceeeCC---------------C-------ChHHHHHHHHHHhhccCC
Q 008457 453 EGFEVILGTDVSYIP---------------E-------AILPLFATAKELTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~---------------~-------~~~~l~~~~~~ll~~~~g 486 (564)
+.||+|+.--..... + ....+++.+.++| +|+|
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l-kpgG 193 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDAL-KPGG 193 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 469999842211111 1 1235888888899 9987
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.1e-07 Score=78.14 Aligned_cols=132 Identities=18% Similarity=0.317 Sum_probs=97.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
....-+||||||+|..+..|++. .|+..+.++|++|.+++..++....+..+++.++.|+.. .+..++.|+++.
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-----~l~~~~VDvLvf 116 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-----GLRNESVDVLVF 116 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-----hhccCCccEEEE
Confidence 45788999999999999999877 567789999999999988777665555678888888754 334588998888
Q ss_pred cccccCC-------------------ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCC
Q 008457 153 VFVLSAV-------------------SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDG 213 (564)
Q Consensus 153 ~~vl~~~-------------------~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (564)
+--.--- .++-..+++.++-.+|.|.|.+++.....+
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N------------------------ 172 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN------------------------ 172 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc------------------------
Confidence 5321111 123356788888899999999998643221
Q ss_pred ceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 214 TRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 214 ~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
.++++.++++.-||.......
T Consensus 173 ------~p~ei~k~l~~~g~~~~~~~~ 193 (209)
T KOG3191|consen 173 ------KPKEILKILEKKGYGVRIAMQ 193 (209)
T ss_pred ------CHHHHHHHHhhcccceeEEEE
Confidence 367888899999998765433
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-07 Score=90.22 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=69.0
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC----CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS----ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~----~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
+++.+..... ..+.+|||+|||+|.++..++... ...|+++|+|+.+++.++++. ..+.+...|..
T Consensus 74 i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~ 143 (272)
T PRK11088 74 VANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSH 143 (272)
T ss_pred HHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecc
Confidence 4444443321 245689999999997777666542 237999999999999987752 12333333322
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
+. ++.+++||+|++. +. +..++.+.++| +|+| .+++..+
T Consensus 144 ~l-------p~~~~sfD~I~~~---~~----~~~~~e~~rvL-kpgG--------~li~~~p 182 (272)
T PRK11088 144 RL-------PFADQSLDAIIRI---YA----PCKAEELARVV-KPGG--------IVITVTP 182 (272)
T ss_pred cC-------CCcCCceeEEEEe---cC----CCCHHHHHhhc-cCCC--------EEEEEeC
Confidence 11 3456799999964 33 23467899999 9988 7766644
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.1e-06 Score=83.46 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=101.3
Q ss_pred CCCCCCChhHHHHHHHHHhHhHHHHHHhhccccccccch---hH---HHHhhhccCCCCCeEEEEcCCccccHHHHHHhC
Q 008457 24 TPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHY---LD---KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY 97 (564)
Q Consensus 24 ~~~~~~~~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~---~~---~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~ 97 (564)
...+.++..+ .|+..-.+.|+..-.. ..+|..+.. +. ..+...+ .++..|+|+|||+|.-+..|++..
T Consensus 25 ~~~k~lp~k~--~YD~~Gs~LFe~It~l--pEYYptr~E~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL 98 (319)
T TIGR03439 25 GQPRTLPTLL--LYDDEGLKLFEEITYS--PEYYLTNDEIEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEAL 98 (319)
T ss_pred CCCCCCChHh--hhcchHHHHHHHHHcC--CccCChHHHHHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHH
Confidence 4455666666 6777666666653211 222222221 11 1222222 456789999999999988877653
Q ss_pred ----CCcEEEEEeCChHHHHHHHhccc-ccCCCee--EEEecCCcccc--cCCCCCCceeEEEE-cccccCCChhHHHHH
Q 008457 98 ----PDVFVYACDFSPRAVNLVMTHKD-FTETRVS--TFVCDLISDDL--SRQISPSSIDIVTM-VFVLSAVSPEKMSLV 167 (564)
Q Consensus 98 ----~~~~v~~iD~s~~~l~~a~~~~~-~~~~~i~--~~~~d~~~~~~--~~~~~~~~fD~V~~-~~vl~~~~~~~~~~~ 167 (564)
...+++++|+|.++++.+.++.. ..-..+. -+++|+.+.-. +.+.......+++. ...+.++++.+...+
T Consensus 99 ~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~f 178 (319)
T TIGR03439 99 ERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAF 178 (319)
T ss_pred HhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHH
Confidence 35789999999999999988876 3334444 47788754311 11111233456666 458999998999999
Q ss_pred HHHHHh-ccCCCeEEEEE
Q 008457 168 LQNIKK-VLKPTGYVLFR 184 (564)
Q Consensus 168 l~~~~r-~LkpgG~lii~ 184 (564)
|+++.+ .|+|||.|++.
T Consensus 179 L~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 179 LAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHHHHHhhCCCCCEEEEe
Confidence 999999 99999999884
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-07 Score=83.98 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=61.5
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchh
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
.+.......++.+|||||||+|.++..++.. +.+|+++|+++.+++.+++|+..+ .++++..-|..+.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~------~~v~ii~~D~~~~----- 71 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA------DNLTVIHGDALKF----- 71 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC------CCEEEEECchhcC-----
Confidence 3444444557789999999999998888877 578999999999999999997531 3455555544332
Q ss_pred hhhhcCCCccEEEEeceeeCC
Q 008457 447 IKEENNEGFEVILGTDVSYIP 467 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d~~y~~ 467 (564)
.....+||+|++ ++.|+.
T Consensus 72 --~~~~~~~d~vi~-n~Py~~ 89 (169)
T smart00650 72 --DLPKLQPYKVVG-NLPYNI 89 (169)
T ss_pred --CccccCCCEEEE-CCCccc
Confidence 122336898875 567764
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.7e-07 Score=82.64 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=99.6
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHh-cCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAA-GSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~-~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
+.|+.....+.+|.+|||.|.|+|.++..++. .+. .+|+..|+.++..+.|++|+..-++. +++....-|-.+.
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~---d~v~~~~~Dv~~~- 158 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG---DRVTLKLGDVREG- 158 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---cceEEEecccccc-
Confidence 44555566788999999999999988887774 343 69999999999999999999997664 3355544333222
Q ss_pred cchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEE
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV 522 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~ 522 (564)
.....||.|+ -+..+....+..++.+| +|+| .+. ++..--.......+.+++.||.=.
T Consensus 159 -------~~~~~vDav~-----LDmp~PW~~le~~~~~L-kpgg--------~~~-~y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 159 -------IDEEDVDAVF-----LDLPDPWNVLEHVSDAL-KPGG--------VVV-VYSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred -------ccccccCEEE-----EcCCChHHHHHHHHHHh-CCCc--------EEE-EEcCCHHHHHHHHHHHHhcCccch
Confidence 1223788875 45667888999999999 9987 332 222222222467888888899888
Q ss_pred EEcCCCCC
Q 008457 523 DKWPSKNS 530 (564)
Q Consensus 523 ~~~~~~~~ 530 (564)
+.+++...
T Consensus 217 e~~E~l~R 224 (256)
T COG2519 217 EAVETLVR 224 (256)
T ss_pred hhheeeeh
Confidence 88766433
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-06 Score=88.39 Aligned_cols=107 Identities=20% Similarity=0.178 Sum_probs=85.5
Q ss_pred CCC-eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRK-DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~-~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
+.. ++|-+|||.-.+...+.+-+ -..++.+|+|+..+.....+.......+.+...|+... .|++++||+|+.-
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l----~fedESFdiVIdk 121 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQL----VFEDESFDIVIDK 121 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhc----cCCCcceeEEEec
Confidence 344 99999999999888887763 34699999999999988877654456678888888655 5689999999999
Q ss_pred ccccCCC--------hhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 154 FVLSAVS--------PEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 154 ~vl~~~~--------~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
..++++- .......+.++.|+|++||+++....
T Consensus 122 GtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 122 GTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 9888772 12345678999999999999888665
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-06 Score=80.82 Aligned_cols=150 Identities=11% Similarity=0.017 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC-----------CCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-----------FLA 429 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~-----------~~~ 429 (564)
...|.+++...+ ..++.+|||+|||.|.-+..++.+ +.+|+++|+|+.+++.+.. .++... ...
T Consensus 20 ~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~ 94 (213)
T TIGR03840 20 NPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAG 94 (213)
T ss_pred CHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecC
Confidence 456677765532 136779999999999777777665 4579999999999997533 122210 112
Q ss_pred ceEEEEeecCCCccchhhhhhcCCCccEEEEeceee--CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----
Q 008457 430 KLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY--IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---- 503 (564)
Q Consensus 430 ~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y--~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r---- 503 (564)
++++..-|..+.+ ....+.||.|+-.-++. ..+..+..++.+.++| +|+| ..+++++...
T Consensus 95 ~v~~~~~D~~~~~------~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lL-kpgG-------~~ll~~~~~~~~~~ 160 (213)
T TIGR03840 95 NIEIFCGDFFALT------AADLGPVDAVYDRAALIALPEEMRQRYAAHLLALL-PPGA-------RQLLITLDYDQSEM 160 (213)
T ss_pred ceEEEEccCCCCC------cccCCCcCEEEechhhccCCHHHHHHHHHHHHHHc-CCCC-------eEEEEEEEcCCCCC
Confidence 3554444443221 00124799998665443 3456677899999999 9987 1345544331
Q ss_pred -----cCChhHHHHHHHHcCCeEEEEcCCCCC
Q 008457 504 -----QVDEPSMLSAATQCGFRLVDKWPSKNS 530 (564)
Q Consensus 504 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~ 530 (564)
..+..++.+.+ ..+|.++.+.+...+
T Consensus 161 ~gpp~~~~~~eL~~~f-~~~~~i~~~~~~~~~ 191 (213)
T TIGR03840 161 AGPPFSVSPAEVEALY-GGHYEIELLESRDVL 191 (213)
T ss_pred CCcCCCCCHHHHHHHh-cCCceEEEEeecccc
Confidence 12223344433 346777777654433
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=82.54 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=102.3
Q ss_pred hhHHHHhhhcc----CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc-----------------
Q 008457 62 YLDKEWGRYFS----GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD----------------- 120 (564)
Q Consensus 62 ~~~~~~~~~l~----~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~----------------- 120 (564)
.+...+.++++ .....+||--|||.|+++..++.. |..+.|.|.|-.|+-..+-...
T Consensus 39 ~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 39 PILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecc
Confidence 34445555544 255789999999999999999999 8899999999999644332100
Q ss_pred ------------------------ccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccC
Q 008457 121 ------------------------FTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLK 176 (564)
Q Consensus 121 ------------------------~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lk 176 (564)
....++....+|+...-.. +-..++||+|+.++.+.-. .++..+|+.|.++||
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~-~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGP-DENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLK 193 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCC-cccCCcccEEEEEEEeech--HHHHHHHHHHHHHhc
Confidence 0012334444454322110 0013699999999777655 589999999999999
Q ss_pred CCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 177 PTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 177 pgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
|||+++=.-+...... .. . .......-++.+++..+++..||+++....
T Consensus 194 pgG~WIN~GPLlyh~~-----~~--------~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 194 PGGYWINFGPLLYHFE-----PM--------S--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred cCCEEEecCCccccCC-----CC--------C--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9997764222111100 00 0 000111246899999999999999986544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.3e-07 Score=87.89 Aligned_cols=139 Identities=16% Similarity=0.159 Sum_probs=86.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCC-CCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKP-PFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~-~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
+.++||+||||.|+++..++.. ...+|+++|+++++++.+++++...... ....++++..-|- ..-+ ....+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da-----~~~l-~~~~~ 149 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG-----IKFV-AETEN 149 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch-----HHHH-hhCCC
Confidence 4679999999999888877775 4579999999999999999987642211 1124555543332 1111 11356
Q ss_pred CccEEEEecee--eCCC---ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEEEEc
Q 008457 454 GFEVILGTDVS--YIPE---AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 454 ~fD~Ii~~d~~--y~~~---~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~~ 525 (564)
+||+|++ |+. +... .-..+++.++++| +|+| ++++......... ....+.+++. |.....+
T Consensus 150 ~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L-~~gG--------vlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~ 218 (283)
T PRK00811 150 SFDVIIV-DSTDPVGPAEGLFTKEFYENCKRAL-KEDG--------IFVAQSGSPFYQADEIKDMHRKLKEV-FPIVRPY 218 (283)
T ss_pred cccEEEE-CCCCCCCchhhhhHHHHHHHHHHhc-CCCc--------EEEEeCCCcccCHHHHHHHHHHHHHH-CCCEEEE
Confidence 8999985 431 1111 1267788999999 9988 6665432221122 2445666665 4555555
Q ss_pred CCCCCC
Q 008457 526 PSKNSA 531 (564)
Q Consensus 526 ~~~~~~ 531 (564)
....|.
T Consensus 219 ~~~vp~ 224 (283)
T PRK00811 219 QAAIPT 224 (283)
T ss_pred EeECCc
Confidence 444444
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-07 Score=84.77 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=63.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhc----CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 376 AGKKVLELGCGCGGICSMVAAG----SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~----~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
.+.+|||+|||+|.++..++.. ...+|+++|+++.+++.+++|+.. +.+..-|.... . .
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~---------~~~~~~D~~~~-------~-~ 111 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE---------ATWINADALTT-------E-F 111 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC---------CEEEEcchhcc-------c-c
Confidence 4679999999999888877654 245899999999999999988531 22332222111 1 1
Q ss_pred CCCccEEEEeceeeCC------------CChHHHHHHHHHHhhccC
Q 008457 452 NEGFEVILGTDVSYIP------------EAILPLFATAKELTASSN 485 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~------------~~~~~l~~~~~~ll~~~~ 485 (564)
+.+||+||++...+.. ..+..+++...+|+ +++
T Consensus 112 ~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll-~~G 156 (241)
T PHA03412 112 DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIA-RQG 156 (241)
T ss_pred cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHc-CCC
Confidence 3589999988766521 23566888888866 554
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.6e-07 Score=93.52 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|+..++.. ++.+...|-.+... ......
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~----~v~~~~~D~~~~~~---~~~~~~ 323 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK----SIKILAADSRNLLE---LKPQWR 323 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC----eEEEEeCChhhccc---cccccc
Confidence 467899999999999888877653 358999999999999999999998863 45555444322110 001124
Q ss_pred CCccEEEEec------eeeCCC----------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE--eeccCChh
Q 008457 453 EGFEVILGTD------VSYIPE----------------AILPLFATAKELTASSNKSLREDQQPAFILCH--IFRQVDEP 508 (564)
Q Consensus 453 ~~fD~Ii~~d------~~y~~~----------------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~--~~r~~~~~ 508 (564)
++||.|+.-- ++.... ....+++.+.++| +|+| .++.+. ..+.+.+.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l-kpgG--------~lvystcsi~~~Ene~ 394 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLL-KPGG--------TLVYATCTLHPAENEA 394 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhc-CCCC--------EEEEEeCCCChhhHHH
Confidence 6899998521 121111 1357788999999 9987 554433 33333343
Q ss_pred HHHHHHHHc-CCeEE
Q 008457 509 SMLSAATQC-GFRLV 522 (564)
Q Consensus 509 ~~~~~~~~~-g~~~~ 522 (564)
.+...+++. +|++.
T Consensus 395 ~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 395 QIEQFLARHPDWKLE 409 (434)
T ss_pred HHHHHHHhCCCcEec
Confidence 444555555 56644
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=91.49 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|+...+. ..+.+...|.... .....
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~----~~v~~~~~Da~~l------~~~~~ 305 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL----SSIEIKIADAERL------TEYVQ 305 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC----CeEEEEECchhhh------hhhhh
Confidence 477899999999999888877653 56999999999999999999998775 2466665554321 11224
Q ss_pred CCccEEEEeceeeCCC-----------------------ChHHHHHHHHHHhhccCC
Q 008457 453 EGFEVILGTDVSYIPE-----------------------AILPLFATAKELTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~-----------------------~~~~l~~~~~~ll~~~~g 486 (564)
++||.|+. |+.+... .-..++..+.++| +|+|
T Consensus 306 ~~fD~Vl~-DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L-kpGG 360 (431)
T PRK14903 306 DTFDRILV-DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLL-EKGG 360 (431)
T ss_pred ccCCEEEE-CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 58999984 3332110 1255688888999 9988
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.57 E-value=8e-07 Score=92.70 Aligned_cols=114 Identities=21% Similarity=0.098 Sum_probs=75.0
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
++..++.++. ..++.+|||+|||+|+.+..++... ..+|+++|.++.+++.+++|+..++.. ..+.....|.
T Consensus 226 ~s~~~~~~L~----~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~---~~v~~~~~d~ 298 (426)
T TIGR00563 226 SAQWVATWLA----PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT---IKAETKDGDG 298 (426)
T ss_pred HHHHHHHHhC----CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEecccc
Confidence 4455555553 3467899999999998888887754 469999999999999999999988763 1122222221
Q ss_pred CCCccchhhhhhcCCCccEEEEe------ceeeCCCC----------------hHHHHHHHHHHhhccCC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGT------DVSYIPEA----------------ILPLFATAKELTASSNK 486 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~------d~~y~~~~----------------~~~l~~~~~~ll~~~~g 486 (564)
... .. .....+||.|+.- .++..... -..+++.+.++| +|+|
T Consensus 299 ~~~---~~--~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~L-kpgG 362 (426)
T TIGR00563 299 RGP---SQ--WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLL-KTGG 362 (426)
T ss_pred ccc---cc--cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 111 00 0124589999841 12222111 357888999999 9988
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6e-07 Score=90.13 Aligned_cols=109 Identities=11% Similarity=0.068 Sum_probs=78.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.+..+||||||+|.+...++... ...++++|+++.+++.+.+++..+++ .++.+...|.... +..+++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL----~NV~~i~~DA~~l-----l~~~~~~s 192 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL----KNLLIINYDARLL-----LELLPSNS 192 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC----CcEEEEECCHHHh-----hhhCCCCc
Confidence 56799999999998887777765 45899999999999999999998876 3566665543211 11346789
Q ss_pred ccEEEEece-eeCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 455 FEVILGTDV-SYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 455 fD~Ii~~d~-~y~~~-----~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
+|.|+..=. .+... ..+.+++.+.++| +++| .+.+.+-.
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvL-kpGG--------~l~l~TD~ 237 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVL-KPGG--------TLELRTDS 237 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHc-CCCc--------EEEEEEEC
Confidence 999985411 11111 1278999999999 9988 66665443
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-06 Score=89.53 Aligned_cols=142 Identities=14% Similarity=0.061 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
+..|.+++...... .+.+||||+||+|.++..+ +..+.+|+++|.++.+++.+++|+..|++ .++.+...|..+
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~l-a~~~~~v~~vE~~~~ai~~a~~N~~~~~~----~~v~~~~~d~~~ 265 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLAL-ARNFRRVLATEISKPSVAAAQYNIAANGI----DNVQIIRMSAEE 265 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHH-HhhCCEEEEEECCHHHHHHHHHHHHHhCC----CcEEEEECCHHH
Confidence 44556665543221 2357999999999888744 45567999999999999999999999986 356666555432
Q ss_pred Cccchhhhhh-----------cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhH
Q 008457 441 RDHIEAIKEE-----------NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS 509 (564)
Q Consensus 441 ~~~~~~~~~~-----------~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~ 509 (564)
. +..+... ...+||+|+. |..+ ....+.+++.+ . ++++ .+|++....... ++
T Consensus 266 ~--l~~~~~~~~~~~~~~~~~~~~~~D~v~l-DPPR-~G~~~~~l~~l---~-~~~~--------ivyvSC~p~tla-rD 328 (362)
T PRK05031 266 F--TQAMNGVREFNRLKGIDLKSYNFSTIFV-DPPR-AGLDDETLKLV---Q-AYER--------ILYISCNPETLC-EN 328 (362)
T ss_pred H--HHHHhhcccccccccccccCCCCCEEEE-CCCC-CCCcHHHHHHH---H-ccCC--------EEEEEeCHHHHH-HH
Confidence 1 1111100 0225898874 7776 34455555444 4 4544 888887664322 22
Q ss_pred HHHHHHHcCCeEEEEcCC
Q 008457 510 MLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 510 ~~~~~~~~g~~~~~~~~~ 527 (564)
+. .+.+ |++++++..+
T Consensus 329 l~-~L~~-gY~l~~v~~~ 344 (362)
T PRK05031 329 LE-TLSQ-THKVERFALF 344 (362)
T ss_pred HH-HHcC-CcEEEEEEEc
Confidence 33 3333 9999988633
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-06 Score=84.32 Aligned_cols=140 Identities=14% Similarity=0.166 Sum_probs=86.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..++||+||||+|+++..++... ..+|+++|+++++++.+++++...+......++++..- +...-+. ...++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~-----D~~~~l~-~~~~~ 145 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQID-----DGFKFLA-DTENT 145 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEEC-----chHHHHH-hCCCC
Confidence 34599999999998887776655 56899999999999999998754322112234544432 1121111 12468
Q ss_pred ccEEEEeceeeC---CCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh---HHHHHHHHcCCeEEEEcC
Q 008457 455 FEVILGTDVSYI---PEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 455 fD~Ii~~d~~y~---~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~g~~~~~~~~ 526 (564)
||+|+. |.... ... ...+++.++++| +|+| ++++.......... .....+++. |.....+.
T Consensus 146 yDvIi~-D~~~~~~~~~~l~~~ef~~~~~~~L-~pgG--------~lv~~~~~~~~~~~~~~~~~~tl~~~-F~~v~~~~ 214 (270)
T TIGR00417 146 FDVIIV-DSTDPVGPAETLFTKEFYELLKKAL-NEDG--------IFVAQSESPWIQLELITDLKRDVKEA-FPITEYYT 214 (270)
T ss_pred ccEEEE-eCCCCCCcccchhHHHHHHHHHHHh-CCCc--------EEEEcCCCcccCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 999985 43311 111 467789999999 9988 76665333222222 223445444 66666665
Q ss_pred CCCCCC
Q 008457 527 SKNSAS 532 (564)
Q Consensus 527 ~~~~~~ 532 (564)
...|..
T Consensus 215 ~~vp~~ 220 (270)
T TIGR00417 215 ANIPTY 220 (270)
T ss_pred EEcCcc
Confidence 555543
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=82.08 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=89.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
...++||||||.|.+...++. ...+|++|+.|+.|...+++. +.. -....+|.+. +.+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~k----g~~------vl~~~~w~~~----------~~~f 152 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKK----GFT------VLDIDDWQQT----------DFKF 152 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhC----CCe------EEehhhhhcc----------CCce
Confidence 567899999999988777754 456799999999887766542 221 2233456543 3489
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------ccCC-------------hhH
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------RQVD-------------EPS 509 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-------------r~~~-------------~~~ 509 (564)
|+|.+..++=.-...-.|++.+++.| +|+| .++++..- ++.. ...
T Consensus 153 DvIscLNvLDRc~~P~~LL~~i~~~l-~p~G--------~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~ 223 (265)
T PF05219_consen 153 DVISCLNVLDRCDRPLTLLRDIRRAL-KPNG--------RLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSS 223 (265)
T ss_pred EEEeehhhhhccCCHHHHHHHHHHHh-CCCC--------EEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHH
Confidence 99999999999999999999999999 9988 55555332 0111 125
Q ss_pred HHHHHHHcCCeEEEEcCC
Q 008457 510 MLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 510 ~~~~~~~~g~~~~~~~~~ 527 (564)
|++.+..+||+++...+.
T Consensus 224 l~~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 224 LVNVFEPAGFEVERWTRL 241 (265)
T ss_pred HHHHHHhcCCEEEEEecc
Confidence 667888899999987644
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=7e-07 Score=84.90 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=84.4
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC----
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI---- 142 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~---- 142 (564)
++...+..+|||||+++|.-+..+++.. ++.+++.+|.+++..+.|++.+...+ .+|+++.+++... ++.-.
T Consensus 74 l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~-L~~l~~~~~ 152 (247)
T PLN02589 74 LLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV-LDQMIEDGK 152 (247)
T ss_pred HHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH-HHHHHhccc
Confidence 3444678899999999999999998874 47899999999999999999876544 7899999987542 11000
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
..++||+|+.-.- ......++..+.++|+|||.+++-
T Consensus 153 ~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 153 YHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 1368999999543 345667888889999999998874
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=79.62 Aligned_cols=112 Identities=16% Similarity=0.080 Sum_probs=74.9
Q ss_pred ceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEE
Q 008457 355 LMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK 434 (564)
Q Consensus 355 ~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~ 434 (564)
+-.|-++..+...|.+...+.++.+|||||||+|.. .+++++...+|+.+|..++..+.+++|+...+. .++.+.
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~-aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~----~nV~v~ 125 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQ-AAVLARLVGRVVSIERIEELAEQARRNLETLGY----ENVTVR 125 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHH-HHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC----CceEEE
Confidence 334444554455555555677899999999999944 444455555999999999999999999998876 346666
Q ss_pred EeecCCCccchhhhhhc-CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 435 RLEWGNRDHIEAIKEEN-NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 435 ~l~w~~~~~~~~~~~~~-~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.-|-... ++ ..+||.|+..-.. +.+-+.+.+-| +++|
T Consensus 126 ~gDG~~G--------~~~~aPyD~I~Vtaaa------~~vP~~Ll~QL-~~gG 163 (209)
T COG2518 126 HGDGSKG--------WPEEAPYDRIIVTAAA------PEVPEALLDQL-KPGG 163 (209)
T ss_pred ECCcccC--------CCCCCCcCEEEEeecc------CCCCHHHHHhc-ccCC
Confidence 5542221 22 2689998854322 22234555667 8887
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=86.40 Aligned_cols=135 Identities=19% Similarity=0.120 Sum_probs=84.8
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHH---hcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVT---ANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~---~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
..++||+||||+|+....++... ..+|+++|+++++++.+++.-. .|.......++++..-|- .+-+ ...
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da-----~~fL-~~~ 223 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA-----KEFL-SSP 223 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH-----HHHH-Hhc
Confidence 45699999999997666666543 4699999999999999996321 122111224555543322 1111 123
Q ss_pred CCCccEEEEeceeeCCC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeE
Q 008457 452 NEGFEVILGTDVSYIPE-------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRL 521 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~-------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~ 521 (564)
.++||+|+ .|+. ++. .-..+++.+++.| +|+| ++++......... ..+...+++.|+.+
T Consensus 224 ~~~YDVII-vDl~-DP~~~~~~~LyT~EFy~~~~~~L-kPgG--------V~V~Qs~sp~~~~~~~~~i~~tL~~af~~v 292 (374)
T PRK01581 224 SSLYDVII-IDFP-DPATELLSTLYTSELFARIATFL-TEDG--------AFVCQSNSPADAPLVYWSIGNTIEHAGLTV 292 (374)
T ss_pred CCCccEEE-EcCC-CccccchhhhhHHHHHHHHHHhc-CCCc--------EEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence 46899998 4532 221 1256889999999 9988 6555433221111 23567788899988
Q ss_pred EEEcCC
Q 008457 522 VDKWPS 527 (564)
Q Consensus 522 ~~~~~~ 527 (564)
......
T Consensus 293 ~~y~t~ 298 (374)
T PRK01581 293 KSYHTI 298 (374)
T ss_pred EEEEEe
Confidence 866544
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.8e-07 Score=81.62 Aligned_cols=106 Identities=8% Similarity=0.042 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+|||+|.++..++.+. ..+|+++|.++.+++.++++....+ .++.++++|+... +. ...++||+|++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~-l~--~~~~~fDlV~~ 127 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF-LA--QPGTPHNVVFV 127 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH-Hh--hcCCCceEEEE
Confidence 457899999999999998655553 4689999999999999988765433 4688999998532 11 12457999999
Q ss_pred cccccCCChhHHHHHHHHHHh--ccCCCeEEEEEec
Q 008457 153 VFVLSAVSPEKMSLVLQNIKK--VLKPTGYVLFRDY 186 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r--~LkpgG~lii~~~ 186 (564)
+=-+..- -...++..+.. +|+|+|.+++...
T Consensus 128 DPPy~~g---~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 128 DPPFRKG---LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCCCCCC---hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 6553221 23344555544 4899998888643
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-06 Score=85.02 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=102.1
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe-ecCC
Q 008457 362 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL-EWGN 440 (564)
Q Consensus 362 ~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l-~w~~ 440 (564)
..||+.+..-....+|..|||=-||||++.+.+... +.+|+++|++..|++-++.|++.-++. ...+... |-.+
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~----~~~~~~~~Da~~ 257 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIE----DYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcC----ceeEEEeccccc
Confidence 356777777667778999999999999887776654 468999999999999999999987753 1211111 2222
Q ss_pred CccchhhhhhcCCCccEEEEeceeeCCC----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHH
Q 008457 441 RDHIEAIKEENNEGFEVILGTDVSYIPE----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSM 510 (564)
Q Consensus 441 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~----------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~ 510 (564)
. +++..++|.|+ +|..|... .+..+++++.+.| +++| .+.++.. ...
T Consensus 258 l-------pl~~~~vdaIa-tDPPYGrst~~~~~~l~~Ly~~~le~~~evL-k~gG--------~~vf~~p------~~~ 314 (347)
T COG1041 258 L-------PLRDNSVDAIA-TDPPYGRSTKIKGEGLDELYEEALESASEVL-KPGG--------RIVFAAP------RDP 314 (347)
T ss_pred C-------CCCCCccceEE-ecCCCCcccccccccHHHHHHHHHHHHHHHh-hcCc--------EEEEecC------Ccc
Confidence 1 34555799875 89999744 3788899999999 8877 7777766 224
Q ss_pred HHHHHHcCCeEEEEcCC
Q 008457 511 LSAATQCGFRLVDKWPS 527 (564)
Q Consensus 511 ~~~~~~~g~~~~~~~~~ 527 (564)
.+.+.+.||++...+..
T Consensus 315 ~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 315 RHELEELGFKVLGRFTM 331 (347)
T ss_pred hhhHhhcCceEEEEEEE
Confidence 56677889999998744
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-06 Score=85.37 Aligned_cols=154 Identities=14% Similarity=0.034 Sum_probs=91.6
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc---CCCeeEEEe-cCCcccccCC--CCCCcee
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVC-DLISDDLSRQ--ISPSSID 148 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~---~~~i~~~~~-d~~~~~~~~~--~~~~~fD 148 (564)
.+.++||||||+|.....++.+.++.+++|+|+++.+++.|+...... ..++.+... +... +..+ .+.+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~--i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA--IFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh--hhhcccccCCceE
Confidence 568999999999988888877777899999999999999999887654 245666532 2211 1111 1467899
Q ss_pred EEEEcccccCCChhH---HHHHHHH----------------HHhccCCCeEEEEEecCCCchhhhhhcccccccccceee
Q 008457 149 IVTMVFVLSAVSPEK---MSLVLQN----------------IKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYV 209 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~---~~~~l~~----------------~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (564)
+|+|+=-++--..+. -..-.+. ..+++.+||.+-+........ ..+.. ...+|.
T Consensus 192 livcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS--~~~~~-----~~gwft 264 (321)
T PRK11727 192 ATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES--KAFAK-----QVLWFT 264 (321)
T ss_pred EEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH--HHHHh-----hCcEEE
Confidence 999987655332111 1111111 234455777765543332211 00000 011221
Q ss_pred cCCCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 210 RGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
..-+.. -+.+.+.+.+++.|...+.+..
T Consensus 265 smv~kk---~~l~~l~~~L~~~~~~~~~~~e 292 (321)
T PRK11727 265 SLVSKK---ENLPPLYRALKKVGAVEVKTIE 292 (321)
T ss_pred EEeecc---CCHHHHHHHHHHcCCceEEEEE
Confidence 111111 2688999999999996554433
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5e-07 Score=80.98 Aligned_cols=95 Identities=15% Similarity=0.229 Sum_probs=72.4
Q ss_pred CCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEE---EeecCCCccchh
Q 008457 371 NPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK---RLEWGNRDHIEA 446 (564)
Q Consensus 371 ~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~---~l~w~~~~~~~~ 446 (564)
+-.+....+|.|||||+|-..-+++.+. .+.|+++|-|++|++.++...- ++.+. --+|.
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp---------~~~f~~aDl~~w~------- 88 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP---------DATFEEADLRTWK------- 88 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC---------CCceecccHhhcC-------
Confidence 3344567799999999995556666654 5699999999999998866421 12222 12232
Q ss_pred hhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 447 IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+...+|+|+++-++..-.+|..|+..+-..| .|+|
T Consensus 89 ----p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L-~Pgg 123 (257)
T COG4106 89 ----PEQPTDLLFANAVLQWLPDHPELLPRLVSQL-APGG 123 (257)
T ss_pred ----CCCccchhhhhhhhhhccccHHHHHHHHHhh-CCCc
Confidence 3458999999999999999999999999999 9988
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=83.75 Aligned_cols=140 Identities=14% Similarity=0.053 Sum_probs=86.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..++||+||||.|++...++... ..+|+++|+++++++.+++.+..........++++..-| ...-+...+.++
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D-----a~~~l~~~~~~~ 165 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD-----GVEFLKNAPEGT 165 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh-----HHHHHhhccCCC
Confidence 56899999999998887777654 468999999999999999987542212223456655433 111222223568
Q ss_pred ccEEEEeceeeCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee---ccCChhHHHHHHHHcCCeEEEEcC
Q 008457 455 FEVILGTDVSYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIF---RQVDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 455 fD~Ii~~d~~y~~~-----~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
||+|+. |..-... .-..+++.++++| +|+| ++++-... .......+...+++....++....
T Consensus 166 yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L-~pgG--------vlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~ 235 (308)
T PLN02366 166 YDAIIV-DSSDPVGPAQELFEKPFFESVARAL-RPGG--------VVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAW 235 (308)
T ss_pred CCEEEE-cCCCCCCchhhhhHHHHHHHHHHhc-CCCc--------EEEECcCCcccchHHHHHHHHHHHHHCCCceeEEE
Confidence 999985 5421111 1346789999999 9988 65442221 111123556777666544555433
Q ss_pred CCCC
Q 008457 527 SKNS 530 (564)
Q Consensus 527 ~~~~ 530 (564)
...|
T Consensus 236 ~~vP 239 (308)
T PLN02366 236 TTVP 239 (308)
T ss_pred ecCC
Confidence 3333
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-06 Score=73.40 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=75.5
Q ss_pred hhhccCCCCCeEEEEcCCccc-cHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGN-TIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~-~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.+...++.+|||||||.|. ++..|++. |.+|+++|+++..++.++... +.++..|+...++. .-..
T Consensus 9 ~~~~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~------~~~v~dDlf~p~~~---~y~~ 77 (134)
T PRK04148 9 AENYEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG------LNAFVDDLFNPNLE---IYKN 77 (134)
T ss_pred HHhcccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC------CeEEECcCCCCCHH---HHhc
Confidence 334444566899999999996 88888876 789999999999999887763 57888998765432 2356
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
+|+|++.. |+.++...+.++.+.+ |.-+++.....
T Consensus 78 a~liysir-----pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 78 AKLIYSIR-----PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred CCEEEEeC-----CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 89999843 4457777788887755 45577764443
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.6e-07 Score=74.69 Aligned_cols=97 Identities=21% Similarity=0.109 Sum_probs=68.1
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccH-HHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGG-ICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~-l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
.+++|+..+....++++|||+|||+|. ++..+. ..+..|+++|+++.+++.++.+. +.+..-|+.+.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~~-----------~~~v~dDlf~p 70 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKLG-----------LNAFVDDLFNP 70 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhC-----------CeEEECcCCCC
Confidence 367888776555567899999999995 555555 44579999999999998887762 24444444433
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhcc
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASS 484 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~ 484 (564)
.+++-=++|++|...-.+.|..-+.++. +.
T Consensus 71 ------------~~~~y~~a~liysirpp~el~~~~~~la-~~ 100 (134)
T PRK04148 71 ------------NLEIYKNAKLIYSIRPPRDLQPFILELA-KK 100 (134)
T ss_pred ------------CHHHHhcCCEEEEeCCCHHHHHHHHHHH-HH
Confidence 3344446677788777777777777777 44
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-06 Score=91.57 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=85.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCC---CCCCCceEEEEeecCCCccchhhhhhc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLK---PPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~---~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
+.++||+||||+|.++..+++... .+|+++|+|+++++.+++|...+.. .....++++..-| ..+.+ ...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~D-----a~~~l-~~~ 370 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD-----AFNWL-RKL 370 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEECh-----HHHHH-HhC
Confidence 567999999999988877776554 7999999999999999996433221 1112455554332 11111 123
Q ss_pred CCCccEEEEeceeeCC------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEE
Q 008457 452 NEGFEVILGTDVSYIP------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLV 522 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~ 522 (564)
+++||+|++ |..... -.-..+++.++++| +|+| ++++......... ....+.+++.||.+.
T Consensus 371 ~~~fDvIi~-D~~~~~~~~~~~L~t~ef~~~~~~~L-~pgG--------~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 371 AEKFDVIIV-DLPDPSNPALGKLYSVEFYRLLKRRL-APDG--------LLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CCCCCEEEE-eCCCCCCcchhccchHHHHHHHHHhc-CCCe--------EEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 468999986 432211 11245889999999 9988 7776543322222 356788888999444
Q ss_pred E
Q 008457 523 D 523 (564)
Q Consensus 523 ~ 523 (564)
.
T Consensus 441 ~ 441 (521)
T PRK03612 441 P 441 (521)
T ss_pred E
Confidence 3
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=81.07 Aligned_cols=113 Identities=18% Similarity=0.255 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc--cCCCeeEEEecCCccccc-CCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLS-RQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~--~~~~i~~~~~d~~~~~~~-~~~~~~~fD~V 150 (564)
..+..|||+|||+|..+..++...|.+.|+++|.|+.++..|.++... ..+.+..+..++..+... .+.+.+++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 455689999999999999999888899999999999999999887643 235666665544433322 23567999999
Q ss_pred EEccc--cc----CC------------------ChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 151 TMVFV--LS----AV------------------SPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 151 ~~~~v--l~----~~------------------~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
++|=- .+ .+ ..+....++.-+.|.|+|||.+.+...
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 99642 11 00 012344666777899999999998654
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-06 Score=79.39 Aligned_cols=101 Identities=12% Similarity=0.127 Sum_probs=75.3
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE-eecCCCccchhhhhh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR-LEWGNRDHIEAIKEE 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~-l~w~~~~~~~~~~~~ 450 (564)
....++|||||++.|.-++.++... ..+++.+|.+++..+.+++|+...+.. +++.... .|+ .+.+...
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~---~~i~~~~~gda-----l~~l~~~ 128 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD---DRIELLLGGDA-----LDVLSRL 128 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEEecCcH-----HHHHHhc
Confidence 3478899999999994444444332 358999999999999999999999885 4455554 333 3333334
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..++||+|+. | -.....+..+..+.++| +|+|
T Consensus 129 ~~~~fDliFI-D--adK~~yp~~le~~~~lL-r~GG 160 (219)
T COG4122 129 LDGSFDLVFI-D--ADKADYPEYLERALPLL-RPGG 160 (219)
T ss_pred cCCCccEEEE-e--CChhhCHHHHHHHHHHh-CCCc
Confidence 5689999872 2 35778899999999999 9988
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-07 Score=75.98 Aligned_cols=81 Identities=23% Similarity=0.305 Sum_probs=58.2
Q ss_pred CCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 371 NPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 371 ~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
....++|+.++|||||+|.+...++......|+++|++|++++.+.+|.+.-.+.. +-+++.-++- .+
T Consensus 43 TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi--dlLqcdildl----------e~ 110 (185)
T KOG3420|consen 43 TYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI--DLLQCDILDL----------EL 110 (185)
T ss_pred hhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh--heeeeeccch----------hc
Confidence 34567999999999999988755555667799999999999999999998765531 1222222211 23
Q ss_pred cCCCccEEEEece
Q 008457 451 NNEGFEVILGTDV 463 (564)
Q Consensus 451 ~~~~fD~Ii~~d~ 463 (564)
..+.||..+.+..
T Consensus 111 ~~g~fDtaviNpp 123 (185)
T KOG3420|consen 111 KGGIFDTAVINPP 123 (185)
T ss_pred cCCeEeeEEecCC
Confidence 3478999886554
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.7e-07 Score=85.89 Aligned_cols=85 Identities=21% Similarity=0.235 Sum_probs=67.3
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCC
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 143 (564)
...+.+.+...++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++... ..+++++++|+....+
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~----- 89 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDL----- 89 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCc-----
Confidence 344445555567899999999999999999998 56899999999999999987653 4579999999865322
Q ss_pred CCceeEEEEccccc
Q 008457 144 PSSIDIVTMVFVLS 157 (564)
Q Consensus 144 ~~~fD~V~~~~vl~ 157 (564)
..||.|+++.-.+
T Consensus 90 -~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 -PEFNKVVSNLPYQ 102 (258)
T ss_pred -hhceEEEEcCCcc
Confidence 2479999976644
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=87.03 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=72.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
++.+|||||||+|..+..++... ..+|+++|+|++|++.+++++...... -++....-|..+. ........ .
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~---~~v~~i~gD~~~~--~~~~~~~~-~ 136 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ---LEVHGICADFTQP--LALPPEPA-A 136 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC---ceEEEEEEcccch--hhhhcccc-c
Confidence 56799999999998888777665 468999999999999999987653321 1233333333221 10000000 1
Q ss_pred CccEEEEe-ceeeC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 454 GFEVILGT-DVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 454 ~fD~Ii~~-d~~y~--~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
..++++.. -++++ .+....+++.+.+.| +|+| .+++....
T Consensus 137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L-~pgG--------~~lig~d~ 179 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLL-GPGG--------GLLIGVDL 179 (301)
T ss_pred CCeEEEEecccccCCCHHHHHHHHHHHHHhc-CCCC--------EEEEeccC
Confidence 13444433 35554 445677999999999 9988 77776544
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.5e-07 Score=79.17 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=81.8
Q ss_pred HHHHhhhcc--CCCCCeEEEEcCCccccHHHHHHh--CCCcEEEEEeCChHHHHHHHhccccc-----------CCCeeE
Q 008457 64 DKEWGRYFS--GAGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFT-----------ETRVST 128 (564)
Q Consensus 64 ~~~~~~~l~--~~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~~iD~s~~~l~~a~~~~~~~-----------~~~i~~ 128 (564)
.....+++. ..++.+.||+|+|+|.++..++.. .++..++|||.-++.++.++++..+. ..++.+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 344445555 489999999999999999988866 35666699999999999999875432 246778
Q ss_pred EEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 129 FVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+.+|.....- ...+||.|++...-. ...+++...|+|||.+++-
T Consensus 149 vvGDgr~g~~----e~a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 149 VVGDGRKGYA----EQAPYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EeCCccccCC----ccCCcceEEEccCcc--------ccHHHHHHhhccCCeEEEe
Confidence 8888764321 567899999975433 3456677788999999984
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=87.59 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-----CCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+.+||.||+|.|..++.+++..+..+++.+|+++.+++.|++.+... ..+++++..|....- .-..++||
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yD 178 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFD 178 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCcc
Confidence 4568999999999999998888655678999999999999999886432 368899999886432 12357899
Q ss_pred EEEEcccccCC---Chh--HHHHHHH-HHHhccCCCeEEEEE
Q 008457 149 IVTMVFVLSAV---SPE--KMSLVLQ-NIKKVLKPTGYVLFR 184 (564)
Q Consensus 149 ~V~~~~vl~~~---~~~--~~~~~l~-~~~r~LkpgG~lii~ 184 (564)
+|++-.. ... +.. --..+++ .+.+.|+|||++++.
T Consensus 179 vIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 179 VIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9998531 111 000 1245787 899999999998764
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=7e-07 Score=87.21 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=65.0
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 142 (564)
+...+.+.+...++.+|||||||+|.++..+++.. .+|+|+|+++.|++.++++... .+++++++|+....+
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~---- 101 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDL---- 101 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCH----
Confidence 34445555555788899999999999999999984 4899999999999999887642 679999999875432
Q ss_pred CCCceeEEEEccc
Q 008457 143 SPSSIDIVTMVFV 155 (564)
Q Consensus 143 ~~~~fD~V~~~~v 155 (564)
++-.+|.|+++--
T Consensus 102 ~~~~~~~vv~NlP 114 (272)
T PRK00274 102 SELQPLKVVANLP 114 (272)
T ss_pred HHcCcceEEEeCC
Confidence 2211477877643
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.4e-06 Score=77.73 Aligned_cols=138 Identities=20% Similarity=0.162 Sum_probs=86.1
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC--C--------EEEEEcCChhHHHHHHHHHHhcCCCCCCCceEE
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--D--------LVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 433 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--~--------~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~ 433 (564)
||.-|.......++..|||--||+|.+.+.++.... . ++++.|+++++++.++.|+...+.. ..+.+
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~---~~i~~ 92 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE---DYIDF 92 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C---GGEEE
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC---CceEE
Confidence 444444433445778999999999999877765432 2 3899999999999999999988764 45666
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEEeceeeCCC---------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
...|..+. +...+.+|+|| +|..|... .+..+++.++++| ++ . .+++....+
T Consensus 93 ~~~D~~~l-------~~~~~~~d~Iv-tnPPyG~r~~~~~~~~~ly~~~~~~~~~~l-~~-~--------~v~l~~~~~- 153 (179)
T PF01170_consen 93 IQWDAREL-------PLPDGSVDAIV-TNPPYGRRLGSKKDLEKLYRQFLRELKRVL-KP-R--------AVFLTTSNR- 153 (179)
T ss_dssp EE--GGGG-------GGTTSBSCEEE-EE--STTSHCHHHHHHHHHHHHHHHHHCHS-TT-C--------EEEEEESCC-
T ss_pred Eecchhhc-------ccccCCCCEEE-ECcchhhhccCHHHHHHHHHHHHHHHHHHC-CC-C--------EEEEEECCH-
Confidence 55444322 23456899887 67777643 4455667777777 54 2 455544333
Q ss_pred CChhHHHHHHHHcCCeEEEEcCC
Q 008457 505 VDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 505 ~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.+...+...+++..+...+
T Consensus 154 ----~~~~~~~~~~~~~~~~~~~ 172 (179)
T PF01170_consen 154 ----ELEKALGLKGWRKRKLYNG 172 (179)
T ss_dssp ----CHHHHHTSTTSEEEEEEET
T ss_pred ----HHHHHhcchhhceEEEEEe
Confidence 2455566668888877644
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.6e-06 Score=80.76 Aligned_cols=141 Identities=15% Similarity=0.150 Sum_probs=92.9
Q ss_pred HHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 366 AVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 366 ~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
.++....++.+|.+|||.|.|+|.++..++.. ...+|+..|..++-.+.+++|++.+++. +.+.+..-|..++..
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~---~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD---DNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC---TTEEEEES-GGCG--
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC---CCceeEecceecccc
Confidence 34445567789999999999999988887753 3459999999999999999999999884 578888877754321
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEE
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD 523 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~ 523 (564)
.+. ....+|.|+ -|+ ......+..+.+.|++++| .+.++..--.-.....+.+++.||.-.+
T Consensus 107 ~~~----~~~~~Davf-LDl----p~Pw~~i~~~~~~L~~~gG---------~i~~fsP~ieQv~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 107 DEE----LESDFDAVF-LDL----PDPWEAIPHAKRALKKPGG---------RICCFSPCIEQVQKTVEALREHGFTDIE 168 (247)
T ss_dssp STT-----TTSEEEEE-EES----SSGGGGHHHHHHHE-EEEE---------EEEEEESSHHHHHHHHHHHHHTTEEEEE
T ss_pred ccc----ccCcccEEE-EeC----CCHHHHHHHHHHHHhcCCc---------eEEEECCCHHHHHHHHHHHHHCCCeeeE
Confidence 111 135788765 344 4455556677777734544 4444444332234678899999998888
Q ss_pred EcCC
Q 008457 524 KWPS 527 (564)
Q Consensus 524 ~~~~ 527 (564)
.+++
T Consensus 169 ~~Ev 172 (247)
T PF08704_consen 169 TVEV 172 (247)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7655
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.6e-06 Score=86.22 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=75.4
Q ss_pred CCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 377 GKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+.+|||+.||+|..++.++.. ++.+|++.|+|+.+++.+++|++.|+.. .+.+...|.. ..+ .....+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~----~~~v~~~Da~-----~~l-~~~~~~ 114 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE----NIEVPNEDAA-----NVL-RYRNRK 114 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----cEEEEchhHH-----HHH-HHhCCC
Confidence 358999999999999888886 5689999999999999999999999763 3444433221 111 112357
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
||+|.. |. |. ...++++.+-+.+ +++| .++++.+
T Consensus 115 fDvIdl-DP-fG--s~~~fld~al~~~-~~~g--------lL~vTaT 148 (374)
T TIGR00308 115 FHVIDI-DP-FG--TPAPFVDSAIQAS-AERG--------LLLVTAT 148 (374)
T ss_pred CCEEEe-CC-CC--CcHHHHHHHHHhc-ccCC--------EEEEEec
Confidence 998875 87 53 4468888888888 7776 6666643
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-06 Score=82.05 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh-
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE- 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~- 450 (564)
..+.++|||||+|+|..+..++... ..+|+.+|.+++.++.+++|++.++.. +++++..-+ ..+.+..+
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~---~~I~li~Gd-----A~e~L~~l~ 187 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS---HKVNVKHGL-----AAESLKSMI 187 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcC-----HHHHHHHHH
Confidence 3467899999999995555554422 458999999999999999999999875 466665432 22333222
Q ss_pred ---cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 ---NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 ---~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..++||+|+ -|. +...+...++.+.++| +++|
T Consensus 188 ~~~~~~~FD~VF-IDa--~K~~Y~~y~e~~l~lL-~~GG 222 (278)
T PLN02476 188 QNGEGSSYDFAF-VDA--DKRMYQDYFELLLQLV-RVGG 222 (278)
T ss_pred hcccCCCCCEEE-ECC--CHHHHHHHHHHHHHhc-CCCc
Confidence 135899987 333 3567889999999999 9987
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.5e-07 Score=86.40 Aligned_cols=104 Identities=22% Similarity=0.204 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..++.|||||||+|.++..-++.+ ..+|+++|.|.-+ +.|++....++ +.|+++.+.+.+..+ |.+++|+|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L----P~eKVDiIv 132 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL----PVEKVDIIV 132 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec----CccceeEEe
Confidence 578999999999999998888886 6789999986654 77777654433 457888888865544 468999999
Q ss_pred EcccccCCC-hhHHHHHHHHHHhccCCCeEEEE
Q 008457 152 MVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 152 ~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+-+.=+++- ..-+..+|-.=-+.|+|||.++=
T Consensus 133 SEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 133 SEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred ehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 966444332 12334455555699999999873
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.8e-07 Score=82.20 Aligned_cols=112 Identities=17% Similarity=0.117 Sum_probs=72.1
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
+...+++...+.++.+|||+|||+|..+.+++...+ .+|+++|.++.+++.+++|+...+. .++.+..-|-...
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~----~nv~~~~gdg~~g 135 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI----DNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT----HSEEEEES-GGGT
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc----CceeEEEcchhhc
Confidence 344444445577899999999999977777776532 3799999999999999999998776 3566655442111
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
+ -...+||.|+..-... ... ..+.+.| +++| ++++...
T Consensus 136 -----~--~~~apfD~I~v~~a~~--~ip----~~l~~qL-~~gG--------rLV~pi~ 173 (209)
T PF01135_consen 136 -----W--PEEAPFDRIIVTAAVP--EIP----EALLEQL-KPGG--------RLVAPIG 173 (209)
T ss_dssp -----T--GGG-SEEEEEESSBBS--S------HHHHHTE-EEEE--------EEEEEES
T ss_pred -----c--ccCCCcCEEEEeeccc--hHH----HHHHHhc-CCCc--------EEEEEEc
Confidence 1 1235899998764442 222 3455668 8887 6666544
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=84.82 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=68.0
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCC
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~ 141 (564)
...+.+.+...++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++.... ..+++++.+|+....+
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--- 99 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--- 99 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc---
Confidence 344445555578899999999999999999987 568999999999999999876532 3679999999965432
Q ss_pred CCCCceeEEEEcccccCC
Q 008457 142 ISPSSIDIVTMVFVLSAV 159 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~ 159 (564)
..||+|+++.-.+..
T Consensus 100 ---~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 100 ---PYFDVCVANVPYQIS 114 (294)
T ss_pred ---cccCEEEecCCcccC
Confidence 368988886554433
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.9e-06 Score=78.13 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=72.3
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC-----------CCCc
Q 008457 362 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-----------FLAK 430 (564)
Q Consensus 362 ~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~-----------~~~~ 430 (564)
..|.+++... ...++.+||++|||.|.-+..++.+ +.+|+++|+++.+++.+.. .+++.. ...+
T Consensus 24 ~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~ 98 (218)
T PRK13255 24 PLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGE 98 (218)
T ss_pred HHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCc
Confidence 4556666532 1235679999999999777777665 5579999999999997642 222211 1123
Q ss_pred eEEEEeecCCCccchhhhhhcCCCccEEEEecee--eCCCChHHHHHHHHHHhhccCC
Q 008457 431 LITKRLEWGNRDHIEAIKEENNEGFEVILGTDVS--YIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 431 i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~--y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+.+..-|..+.. ....+.||+|+-.-++ ..++.....++.+.++| +|+|
T Consensus 99 v~~~~~D~~~l~------~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL-~pgG 149 (218)
T PRK13255 99 ITIYCGDFFALT------AADLADVDAVYDRAALIALPEEMRERYVQQLAALL-PAGC 149 (218)
T ss_pred eEEEECcccCCC------cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHc-CCCC
Confidence 444333332210 1112478998865543 34556788999999999 9987
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=87.35 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=72.8
Q ss_pred CCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc-CCC
Q 008457 377 GKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-NEG 454 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~-~~~ 454 (564)
+.+|||++||+|.++..++.. +..+|+++|+++.+++.+++|++.|++. .+.+..-|. ..+ +. ..+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~----~~~v~~~Da------~~~--l~~~~~ 125 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE----NEKVFNKDA------NAL--LHEERK 125 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ceEEEhhhH------HHH--HhhcCC
Confidence 468999999999888887664 4469999999999999999999999874 233332222 111 11 357
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
||+|+. |. | ....++++..-..+ +++| .++++.+.
T Consensus 126 fD~V~l-DP-~--Gs~~~~l~~al~~~-~~~g--------ilyvSAtD 160 (382)
T PRK04338 126 FDVVDI-DP-F--GSPAPFLDSAIRSV-KRGG--------LLCVTATD 160 (382)
T ss_pred CCEEEE-CC-C--CCcHHHHHHHHHHh-cCCC--------EEEEEecC
Confidence 999986 65 3 44567888866667 7777 77777443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.5e-06 Score=80.79 Aligned_cols=71 Identities=20% Similarity=0.183 Sum_probs=57.4
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcc
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~ 136 (564)
+...+.+.+...++.+|||||||+|.++..+++.+ .+|+++|+++.+++.++.+... ..+++++.+|+...
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKV 87 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcC
Confidence 33445555555778999999999999999999985 4699999999999999887643 46788999998653
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-06 Score=80.94 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh-hc
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-EN 451 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-~~ 451 (564)
.+.++|||||||+|.-+..++... ..+|+.+|.+++..+.+++|+...+.. ++|++..-+..+ .+..+.. ..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~---~~I~~~~gda~~--~l~~l~~~~~ 118 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD---DRIEVIEGDALE--VLPELANDGE 118 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG---GGEEEEES-HHH--HHHHHHHTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC---CcEEEEEeccHh--hHHHHHhccC
Confidence 466799999999994444444322 469999999999999999999998874 577776544321 1222221 12
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.++||+|+. |. ....+...++.+.++| +++|
T Consensus 119 ~~~fD~VFi-Da--~K~~y~~y~~~~~~ll-~~gg 149 (205)
T PF01596_consen 119 EGQFDFVFI-DA--DKRNYLEYFEKALPLL-RPGG 149 (205)
T ss_dssp TTSEEEEEE-ES--TGGGHHHHHHHHHHHE-EEEE
T ss_pred CCceeEEEE-cc--cccchhhHHHHHhhhc-cCCe
Confidence 358999873 33 5677888899999999 9887
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-06 Score=88.83 Aligned_cols=102 Identities=27% Similarity=0.329 Sum_probs=71.2
Q ss_pred CCeEEEEcCCccccHHHHHHhC----CCcEEEEEeCChHHHHHHHhcc--cccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAY----PDVFVYACDFSPRAVNLVMTHK--DFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~----~~~~v~~iD~s~~~l~~a~~~~--~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
...|||||||+|.++...++.. ...+|++++-++.+....+++. ....++|+++.+|+....+ ..++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-----pekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-----PEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----SS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----CCceeE
Confidence 6789999999999987776652 2469999999998887765542 2345789999999987655 248999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEE
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~li 182 (564)
|++-..=.....+-....|....|.|||||+++
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 999332111112345567888899999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-06 Score=88.25 Aligned_cols=102 Identities=10% Similarity=0.046 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++....+ .++++.++|+..... . ...+||+|++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~--~-~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFAT--A-QMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHH--h-cCCCCCEEEE
Confidence 45689999999999999999866 5789999999999999998765443 378999999854221 1 1245999988
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.=--..+ ...+++.+. .++|++.++++.
T Consensus 307 DPPr~G~----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 307 NPPRRGI----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCCCC----cHHHHHHHH-hcCCCeEEEEEe
Confidence 5221222 123445554 479999988863
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.8e-06 Score=84.34 Aligned_cols=140 Identities=14% Similarity=0.056 Sum_probs=85.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
+..|.+++.+.... .+.+|||||||+|.++..++ ..+.+|+++|.++++++.+++|+..|++. ++.+...|..+
T Consensus 183 ~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la-~~~~~v~~vE~~~~av~~a~~n~~~~~~~----~v~~~~~d~~~ 256 (353)
T TIGR02143 183 NIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALA-QNFRRVLATEIAKPSVNAAQYNIAANNID----NVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHH-HhCCEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEEcCHHH
Confidence 34455555443322 23479999999998877554 44579999999999999999999999863 46666555432
Q ss_pred Cccchhhhh---h---c-----CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhH
Q 008457 441 RDHIEAIKE---E---N-----NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS 509 (564)
Q Consensus 441 ~~~~~~~~~---~---~-----~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~ 509 (564)
. +..... + . ...||+|+. |.. .....+.+++.+ + ++++ .+|++.......- +
T Consensus 257 ~--~~~~~~~~~~~~~~~~~~~~~~~d~v~l-DPP-R~G~~~~~l~~l---~-~~~~--------ivYvsC~p~tlaR-D 319 (353)
T TIGR02143 257 F--TQAMNGVREFRRLKGIDLKSYNCSTIFV-DPP-RAGLDPDTCKLV---Q-AYER--------ILYISCNPETLKA-N 319 (353)
T ss_pred H--HHHHhhccccccccccccccCCCCEEEE-CCC-CCCCcHHHHHHH---H-cCCc--------EEEEEcCHHHHHH-H
Confidence 1 110000 0 0 124898775 666 344455555544 4 4554 8888877655432 2
Q ss_pred HHHHHHHcCCeEEEEc
Q 008457 510 MLSAATQCGFRLVDKW 525 (564)
Q Consensus 510 ~~~~~~~~g~~~~~~~ 525 (564)
+ ..+. .|+++.++-
T Consensus 320 l-~~L~-~~Y~l~~v~ 333 (353)
T TIGR02143 320 L-EQLS-ETHRVERFA 333 (353)
T ss_pred H-HHHh-cCcEEEEEE
Confidence 2 2232 358888775
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.9e-06 Score=73.78 Aligned_cols=96 Identities=26% Similarity=0.287 Sum_probs=75.8
Q ss_pred eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEcccc
Q 008457 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVL 156 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl 156 (564)
+++|||+|.|.-+..|+-.+|..+++.+|....-+...+.-....+ .|+++.+..+.. +....+||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~~~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-----PEYRESFDVVTARAVA 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-----TTTTT-EEEEEEESSS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-----cccCCCccEEEeehhc
Confidence 8999999999999999999999999999999987766665443333 468888888754 2256899999998873
Q ss_pred cCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 157 SAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 157 ~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.+..++.-+...|++||.+++.
T Consensus 126 ------~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 ------PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp ------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEE
Confidence 4567888899999999999875
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.2e-06 Score=78.52 Aligned_cols=102 Identities=24% Similarity=0.265 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..+..|||+|||+|.++...++.+ ..+|++++. .+|.+.|++..+.+ .++|.++.+.+.+.++ +++.|+|+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-----PEk~DviI 248 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIEL-----PEKVDVII 248 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC-cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccC-----chhccEEE
Confidence 678999999999999998888774 568999997 67889998876543 3678888888866554 36899999
Q ss_pred Eccc-ccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 152 MVFV-LSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 152 ~~~v-l~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+--. ..-+. +.+....-..++.|||.|.++-
T Consensus 249 SEPMG~mL~N-ERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 249 SEPMGYMLVN-ERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred eccchhhhhh-HHHHHHHHHHHhhcCCCCcccC
Confidence 8322 11222 4445555667799999999863
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.9e-06 Score=80.28 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=86.1
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEe-cCCcccccC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVC-DLISDDLSR 140 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~-d~~~~~~~~ 140 (564)
+...+..+....+|..|||-=||||.++....-. |++++|+|++..|++-|+.+...-+ ....+... |+...
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l---- 258 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL---- 258 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC----
Confidence 3344445555688999999999999998877666 8999999999999999999876543 23333333 77543
Q ss_pred CCCCCceeEEEEccc------ccCCC-hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 141 QISPSSIDIVTMVFV------LSAVS-PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 141 ~~~~~~fD~V~~~~v------l~~~~-~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
|+++.++|.|++--- ..-.. .+-...+|+.+.++|++||++++..
T Consensus 259 pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 259 PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 467778999999221 11111 2457789999999999999998853
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.5e-06 Score=83.31 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=61.8
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
++.+.+.....++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++|+.. .++.+...|+.+.+ .
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-------~~v~~i~~D~~~~~-~ 101 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-------DNLTIIEGDALKVD-L 101 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-------CceEEEEChhhcCC-H
Confidence 44555544556788999999999998888887754 899999999999999987642 34666666665431 1
Q ss_pred hhhhhhcCCCccEEEEeceeeCCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPE 468 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~ 468 (564)
....+|.|+++ +.|+..
T Consensus 102 ------~~~~~~~vv~N-lPY~is 118 (272)
T PRK00274 102 ------SELQPLKVVAN-LPYNIT 118 (272)
T ss_pred ------HHcCcceEEEe-CCccch
Confidence 11115778766 456553
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-06 Score=72.71 Aligned_cols=80 Identities=18% Similarity=0.352 Sum_probs=65.2
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.-.+++++|+|||.|-++...+.. ....|+|+|++|+++++++++......++.+.++|+.++.+ ..+.||.++.
T Consensus 46 diEgkkl~DLgcgcGmLs~a~sm~-~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~----~~g~fDtavi 120 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFSMP-KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLEL----KGGIFDTAVI 120 (185)
T ss_pred cccCcchhhhcCchhhhHHHhhcC-CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhc----cCCeEeeEEe
Confidence 357899999999999998555433 34579999999999999999988777888999999987654 4588999999
Q ss_pred ccccc
Q 008457 153 VFVLS 157 (564)
Q Consensus 153 ~~vl~ 157 (564)
+--+.
T Consensus 121 NppFG 125 (185)
T KOG3420|consen 121 NPPFG 125 (185)
T ss_pred cCCCC
Confidence 76543
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.1e-06 Score=82.20 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=65.4
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+.+.......++.+|||||||+|.++..++.. +.+|+++|+|+.+++.+++++..++.. .++.+..-|..+.
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~---~~v~ii~~Dal~~--- 97 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLA---SKLEVIEGDALKT--- 97 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCC---CcEEEEECCHhhh---
Confidence 445555445567889999999999888877765 468999999999999999998876532 4566666555432
Q ss_pred hhhhhhcCCCccEEEEeceeeCCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPE 468 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~ 468 (564)
....||+|+ +++.|+..
T Consensus 98 ------~~~~~d~Vv-aNlPY~Is 114 (294)
T PTZ00338 98 ------EFPYFDVCV-ANVPYQIS 114 (294)
T ss_pred ------cccccCEEE-ecCCcccC
Confidence 123689877 46677654
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.7e-06 Score=80.80 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=62.5
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+++.+.+.....++.+|||+|||+|.++..++.. +.+|+++|+++.+++.+++++.. . .++.+..-|..+.
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~----~~v~ii~~D~~~~-- 87 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--A----GNVEIIEGDALKV-- 87 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--C----CCEEEEEeccccC--
Confidence 3455555555667889999999999888888876 56899999999999999988753 1 3566665554432
Q ss_pred chhhhhhcCCCccEEEEeceeeCC
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIP 467 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~ 467 (564)
....||.|+++-+ |+.
T Consensus 88 -------~~~~~d~Vv~NlP-y~i 103 (258)
T PRK14896 88 -------DLPEFNKVVSNLP-YQI 103 (258)
T ss_pred -------CchhceEEEEcCC-ccc
Confidence 1125798887654 554
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-05 Score=78.91 Aligned_cols=140 Identities=15% Similarity=0.157 Sum_probs=93.4
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccCCCeeE-EEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVST-FVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~-~~~d~~~~~~~~~~ 142 (564)
.++.+.++...+.+|||+|||.|..+-......+ -.+++++|.|+.|++.++.........-.. ......... .
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----~ 98 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF----L 98 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc----c
Confidence 3444444446778999999999987766665544 347999999999999988765432211100 011111110 1
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHH
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
+-...|+|++.++|..++.+....+++++.+.+.+ .|++.+++.+... -...
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf--------------------------~~i~ 150 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF--------------------------RRIA 150 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH--------------------------HHHH
Confidence 22234999999999999877788899999888776 8888887754321 1356
Q ss_pred HHHHHHHhCCCcEE
Q 008457 223 FLTSLFKENGFDVE 236 (564)
Q Consensus 223 ~l~~~l~~aGf~~~ 236 (564)
++++.|.+.|+.++
T Consensus 151 ~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 151 EARDQLLEKGAHVV 164 (274)
T ss_pred HHHHHHhhCCCceE
Confidence 77888888888765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-05 Score=80.69 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=82.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCc-EEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDV-FVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.+.+||++=|=||.++.+.+.. |+ +|+++|.|...++.|+++...++ .++.+++.|+...--...-...+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4999999999999999998887 56 89999999999999999876544 457899999854321111134589999
Q ss_pred EEcc-ccc------CCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 151 TMVF-VLS------AVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 151 ~~~~-vl~------~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++-= .+- +--..+...++..+.++|+|||.+++++
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9911 111 1113567788999999999999999864
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.4e-06 Score=76.92 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHH-HHhcccccCCCeeEEEecCCc---ccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL-VMTHKDFTETRVSTFVCDLIS---DDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~-a~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~~~fD~ 149 (564)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+++.|+.. .++... -+.+...++.. ++.. ..-..+|+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~----v~~~~~~ni~~~~~~~~~--~d~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDER----VKVLERTNIRYVTPADIF--PDFATFDV 146 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCC----eeEeecCCcccCCHhHcC--CCceeeeE
Confidence 467899999999999999999873 4589999999988765 333321 01122333331 1111 11135676
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+++... ..+..+.+.|+| |.+++.
T Consensus 147 sfiS~~----------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 147 SFISLI----------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred EEeehH----------hHHHHHHHHhCc-CeEEEE
Confidence 665332 257789999999 776654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-06 Score=78.16 Aligned_cols=97 Identities=22% Similarity=0.248 Sum_probs=66.7
Q ss_pred CCCCCeEEEeCCcccHHHHHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..++..|||+.||.|.++..++. ..++.|++.|++|.+++.+++|+.+|++. +.+.+...|..+. ...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~---~~i~~~~~D~~~~--------~~~ 167 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE---NRIEVINGDAREF--------LPE 167 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T---TTEEEEES-GGG-----------T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC---CeEEEEcCCHHHh--------cCc
Confidence 34788999999999999888876 34678999999999999999999999885 5677776664322 125
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..||-|++.- +.....++..+..++ +++|
T Consensus 168 ~~~drvim~l----p~~~~~fl~~~~~~~-~~~g 196 (200)
T PF02475_consen 168 GKFDRVIMNL----PESSLEFLDAALSLL-KEGG 196 (200)
T ss_dssp T-EEEEEE------TSSGGGGHHHHHHHE-EEEE
T ss_pred cccCEEEECC----hHHHHHHHHHHHHHh-cCCc
Confidence 6899998643 333446777788888 7655
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.5e-07 Score=78.93 Aligned_cols=104 Identities=18% Similarity=0.304 Sum_probs=75.3
Q ss_pred HHHhhhccC------CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc
Q 008457 65 KEWGRYFSG------AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138 (564)
Q Consensus 65 ~~~~~~l~~------~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~ 138 (564)
..|.+++.. ..+.++||+|+|.|..+..++..+ -+|++.++|..|+.+.+.+.- ++-- ..+..+
T Consensus 96 ~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~y----nVl~-~~ew~~--- 165 (288)
T KOG3987|consen 96 EQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKNY----NVLT-EIEWLQ--- 165 (288)
T ss_pred HHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcCC----ceee-ehhhhh---
Confidence 445555432 345899999999999999888773 469999999999988876532 1110 111111
Q ss_pred cCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCC-CeEEEEE
Q 008457 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKP-TGYVLFR 184 (564)
Q Consensus 139 ~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkp-gG~lii~ 184 (564)
.+-+||+|.|..+|.-- .++.++|+.+..+|+| .|.+++.
T Consensus 166 ----t~~k~dli~clNlLDRc--~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 166 ----TDVKLDLILCLNLLDRC--FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ----cCceeehHHHHHHHHhh--cChHHHHHHHHHHhccCCCcEEEE
Confidence 23479999999888633 3788999999999999 7888774
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.5e-06 Score=82.00 Aligned_cols=93 Identities=11% Similarity=-0.035 Sum_probs=71.4
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 140 (564)
.+..++.+.+...++..+||.+||.|.++..+++..+ .++|+|+|.++.+++.|+++... ..++.+++.++.......
T Consensus 6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHH
Confidence 3456667777777889999999999999999999874 68999999999999999988765 568899998886532111
Q ss_pred CCCCCceeEEEEccc
Q 008457 141 QISPSSIDIVTMVFV 155 (564)
Q Consensus 141 ~~~~~~fD~V~~~~v 155 (564)
+-.-.++|.|++...
T Consensus 85 ~~~~~~vDgIl~DLG 99 (296)
T PRK00050 85 AEGLGKVDGILLDLG 99 (296)
T ss_pred HcCCCccCEEEECCC
Confidence 101127898888553
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=72.87 Aligned_cols=104 Identities=20% Similarity=0.146 Sum_probs=73.4
Q ss_pred eEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc-hhhhhhcCCCcc
Q 008457 379 KVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI-EAIKEENNEGFE 456 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~-~~~~~~~~~~fD 456 (564)
+|||||||||--+..++.... -.-.-+|.++..+..++..+...+..-.... ..+|....... .........+||
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P---~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPP---LALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCC---eEeecCCCCCccccccccCCCCcc
Confidence 699999999988888777654 4788999999888888887777665321122 23333322110 000012356899
Q ss_pred EEEEeceeeC--CCChHHHHHHHHHHhhccCC
Q 008457 457 VILGTDVSYI--PEAILPLFATAKELTASSNK 486 (564)
Q Consensus 457 ~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g 486 (564)
.|+++.+++- .+..+.|++.+.++| +++|
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L-~~gG 135 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLL-KPGG 135 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhC-CCCC
Confidence 9999999876 568899999999999 9887
|
The function of this family is unknown. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=82.36 Aligned_cols=142 Identities=15% Similarity=0.071 Sum_probs=96.2
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
+..|..++.+.....++.+||||=||.|.++..++ +...+|+++|+++++++.+++|++.|+.. ++.+...+-.+
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i~----N~~f~~~~ae~ 352 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGID----NVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCCC----cEEEEeCCHHH
Confidence 45677777776666678899999999997777666 56779999999999999999999999984 36665443221
Q ss_pred CccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCe
Q 008457 441 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFR 520 (564)
Q Consensus 441 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~ 520 (564)
. ... ......+|+|| -|..--- .-+.+++.+.++- +...+|++...-. ..+-+..+.+.|.+
T Consensus 353 ~--~~~--~~~~~~~d~Vv-vDPPR~G-~~~~~lk~l~~~~----------p~~IvYVSCNP~T--laRDl~~L~~~gy~ 414 (432)
T COG2265 353 F--TPA--WWEGYKPDVVV-VDPPRAG-ADREVLKQLAKLK----------PKRIVYVSCNPAT--LARDLAILASTGYE 414 (432)
T ss_pred H--hhh--ccccCCCCEEE-ECCCCCC-CCHHHHHHHHhcC----------CCcEEEEeCCHHH--HHHHHHHHHhCCeE
Confidence 1 100 01235789887 3433222 2346666666655 2337777755443 33457777788988
Q ss_pred EEEEc
Q 008457 521 LVDKW 525 (564)
Q Consensus 521 ~~~~~ 525 (564)
++++-
T Consensus 415 i~~v~ 419 (432)
T COG2265 415 IERVQ 419 (432)
T ss_pred EEEEE
Confidence 87774
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.6e-06 Score=84.89 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=76.2
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-----CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-----ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-----~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
|.+.........+++.|+++|||+|.|+..++..+ +.+|++++.|+.++..+++.+..|+.. ++|.+..-|-
T Consensus 174 l~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~---~~V~vi~~d~ 250 (448)
T PF05185_consen 174 LKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG---DKVTVIHGDM 250 (448)
T ss_dssp HHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT---TTEEEEES-T
T ss_pred HHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC---CeEEEEeCcc
Confidence 44555444333357899999999998887666543 569999999999998888877888875 6687776554
Q ss_pred CCCccchhhhhhcCCCccEEEEece--eeCCCChHHHHHHHHHHhhccCC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDV--SYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~--~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.+-. .+.++|+||+=-+ +-..+..+..+....++| +|+|
T Consensus 251 r~v~--------lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfL-kp~G 291 (448)
T PF05185_consen 251 REVE--------LPEKVDIIVSELLGSFGDNELSPECLDAADRFL-KPDG 291 (448)
T ss_dssp TTSC--------HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGE-EEEE
T ss_pred cCCC--------CCCceeEEEEeccCCccccccCHHHHHHHHhhc-CCCC
Confidence 4331 2348999984322 234567788899999999 9877
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.4e-05 Score=76.14 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=71.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
.|.+|||+-||.|.+++.++..+..+|+++|+||.+++++++|+.+|+.. +.+.....|-..- . . ..+.+
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~---~~v~~i~gD~rev-----~-~-~~~~a 257 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE---GRVEPILGDAREV-----A-P-ELGVA 257 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc---ceeeEEeccHHHh-----h-h-ccccC
Confidence 58899999999999999988888777999999999999999999999985 3455554432211 0 1 11679
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
|-|++.-+. .-..++.....++ +++|
T Consensus 258 DrIim~~p~----~a~~fl~~A~~~~-k~~g 283 (341)
T COG2520 258 DRIIMGLPK----SAHEFLPLALELL-KDGG 283 (341)
T ss_pred CEEEeCCCC----cchhhHHHHHHHh-hcCc
Confidence 999865433 3455667777777 6665
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-05 Score=75.51 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=89.5
Q ss_pred CCCeEEEEcCCc--cccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCC-------CC
Q 008457 75 GRKDVLEVGCGA--GNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQ-------IS 143 (564)
Q Consensus 75 ~~~~VLDiGcG~--G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~-------~~ 143 (564)
.-...||||||- -..+...++. .|+.+|+.+|.+|-.+.-++....... ....++++|+...+--+. +.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 667899999993 4556666655 789999999999999988887765332 237899999875432111 11
Q ss_pred CCceeEEEEcccccCCCh-hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHH
Q 008457 144 PSSIDIVTMVFVLSAVSP-EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~-~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
-..-=.++...+|||+++ +++..++..++..|.||.+|+++-........ .. .... ..+. ..+...++-+.+
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~-~~-~~~~----~~~~-~~~~~~~~Rs~~ 220 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPE-RA-EALE----AVYA-QAGSPGRPRSRE 220 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHH-HH-HHHH----HHHH-HCCS----B-HH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHH-HH-HHHH----HHHH-cCCCCceecCHH
Confidence 122236777889999985 78999999999999999999998665542211 10 0000 0111 123333455899
Q ss_pred HHHHHHHhCCCcEEEeeeee
Q 008457 223 FLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~~ 242 (564)
++..+|. ||++++=+...
T Consensus 221 ei~~~f~--g~elvePGlv~ 238 (267)
T PF04672_consen 221 EIAAFFD--GLELVEPGLVP 238 (267)
T ss_dssp HHHHCCT--TSEE-TT-SEE
T ss_pred HHHHHcC--CCccCCCceec
Confidence 9999997 89988754443
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.5e-06 Score=78.53 Aligned_cols=106 Identities=18% Similarity=0.224 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-----CCeeEEEecCCcccccCCCCCCceeE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-----TRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
...+||-||.|.|..++.+++..+-.+++.+|+++..++.+++.+.... .+++.+..|....-- . ...+||+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~--~-~~~~fDv 152 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR--D-CEEKFDV 152 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH--h-CCCcCCE
Confidence 3379999999999999999999777899999999999999999865432 677888888753221 1 2238999
Q ss_pred EEEcccccCCCh---hHHHHHHHHHHhccCCCeEEEEE
Q 008457 150 VTMVFVLSAVSP---EKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 150 V~~~~vl~~~~~---~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
|++-..=. ..+ ---..+++.+++.|+++|+++..
T Consensus 153 Ii~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99944322 110 01267999999999999999985
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.5e-06 Score=78.38 Aligned_cols=107 Identities=12% Similarity=0.062 Sum_probs=81.0
Q ss_pred HHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 366 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 366 ~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
..+.........++|||||+|+|.++..++...+ .+++..|+ |++++.+++ .+++.+...|+-+.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f~~--- 155 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFFDP--- 155 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TTTC---
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHHhh---
Confidence 4444555555677999999999988887777654 49999999 999998888 27889988887622
Q ss_pred hhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccC--CCCCCCCCcEEEEEEee
Q 008457 445 EAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSN--KSLREDQQPAFILCHIF 502 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~--g~~~~~~~~~~~~~~~~ 502 (564)
++. +|+|+.+.++++. +....+++.+...| +|+ | ++++.-..
T Consensus 156 -----~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al-~pg~~g--------~llI~e~~ 201 (241)
T PF00891_consen 156 -----LPV--ADVYLLRHVLHDWSDEDCVKILRNAAAAL-KPGKDG--------RLLIIEMV 201 (241)
T ss_dssp -----CSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHS-EECTTE--------EEEEEEEE
T ss_pred -----hcc--ccceeeehhhhhcchHHHHHHHHHHHHHh-CCCCCC--------eEEEEeec
Confidence 233 9999999999774 46778899999999 986 6 77776665
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.15 E-value=8e-06 Score=81.33 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=82.0
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC--CCCceEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP--FLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~--~~~~i~~ 433 (564)
--|--+.++..|+.......++.+|||||||-|+-..--......+++++|++++.|+.+++....-.... ...+..+
T Consensus 42 NNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f 121 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDF 121 (331)
T ss_dssp HHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECC
T ss_pred hHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccc
Confidence 45878888888876543333788999999998875555555567899999999999999988773211100 0011111
Q ss_pred EE-eecCCCccchhhh-hhcC--CCccEEEEeceeeC----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 434 KR-LEWGNRDHIEAIK-EENN--EGFEVILGTDVSYI----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 434 ~~-l~w~~~~~~~~~~-~~~~--~~fD~Ii~~d~~y~----~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
.. +-..+.. ...+. .+.+ .+||+|=+.=++++ .+....+++.+..+| +||| .|+.+.+.-
T Consensus 122 ~a~f~~~D~f-~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~L-k~GG--------~FIgT~~d~ 189 (331)
T PF03291_consen 122 IAEFIAADCF-SESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLL-KPGG--------YFIGTTPDS 189 (331)
T ss_dssp EEEEEESTTC-CSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTE-EEEE--------EEEEEEE-H
T ss_pred hhheeccccc-cchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhc-CCCC--------EEEEEecCH
Confidence 11 1122111 11111 1333 49999876654433 345667999999999 9988 888776653
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=9e-06 Score=75.66 Aligned_cols=90 Identities=22% Similarity=0.200 Sum_probs=72.6
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccccc
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLS 139 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~ 139 (564)
.+...+.+.....++..|||||.|||.++..|++. +.+|+++++++.|+....++....+ ..+++..+|+...++
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-
Confidence 34445555555689999999999999999999999 7899999999999999988876555 788999999987654
Q ss_pred CCCCCCceeEEEEcccccCC
Q 008457 140 RQISPSSIDIVTMVFVLSAV 159 (564)
Q Consensus 140 ~~~~~~~fD~V~~~~vl~~~ 159 (564)
..||.++++.-..-.
T Consensus 122 -----P~fd~cVsNlPyqIS 136 (315)
T KOG0820|consen 122 -----PRFDGCVSNLPYQIS 136 (315)
T ss_pred -----cccceeeccCCcccc
Confidence 368999996654433
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-05 Score=72.94 Aligned_cols=113 Identities=12% Similarity=0.269 Sum_probs=73.5
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCC-------------CCceEE-----
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPF-------------LAKLIT----- 433 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~-------------~~~i~~----- 433 (564)
+.+.++.+||+||-+|.++..++.. ++..|+++|+++..|+.|++|+..-..... ...|..
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4568889999999999777777765 467899999999999999999875321100 000000
Q ss_pred --EEee-----cCCCc----cchhhhhhcCCCccEEEEecee------eCCCChHHHHHHHHHHhhccCC
Q 008457 434 --KRLE-----WGNRD----HIEAIKEENNEGFEVILGTDVS------YIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 434 --~~l~-----w~~~~----~~~~~~~~~~~~fD~Ii~~d~~------y~~~~~~~l~~~~~~ll~~~~g 486 (564)
...+ |.... +...+.......||+|+|--+- ++.+-+-.+++.+.++| .|+|
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll-~pgG 203 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLL-HPGG 203 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhh-CcCc
Confidence 0000 10000 0011113345689999976442 23557889999999999 9988
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.7e-05 Score=72.34 Aligned_cols=110 Identities=20% Similarity=0.202 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
+.+.+||-||.|.|..++.+++..+..+++++|+++.+++.|++.+.. ...+++++..|....-. .....+||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~--~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK--ETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH--TSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH--hccCCccc
Confidence 578999999999999999998775567899999999999999987542 24688999998754211 11222899
Q ss_pred EEEEcccccCCChh--HHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPE--KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~--~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|+.-..-...+.. --..+++.+++.|+|||++++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99984332211111 13579999999999999999864
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=73.49 Aligned_cols=107 Identities=8% Similarity=0.039 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCC-ceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS-SIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~-~fD~V 150 (564)
..+.+|||++||+|.++..++.++. .+|+++|.++.+++.++++....+ .++++++.|+... +....... .||+|
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-l~~~~~~~~~~dvv 125 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-LKFLAKKPTFDNVI 125 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-HHHhhccCCCceEE
Confidence 3578999999999999999998842 489999999999999988765433 3678899998432 11001122 47877
Q ss_pred EEcccccCCChhHHHHHHHHH--HhccCCCeEEEEEe
Q 008457 151 TMVFVLSAVSPEKMSLVLQNI--KKVLKPTGYVLFRD 185 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~--~r~LkpgG~lii~~ 185 (564)
+..=-+.. .....++..+ ..+|+++|.+++..
T Consensus 126 ~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 126 YLDPPFFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 77322221 1223344444 35788999887753
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=9e-06 Score=74.48 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=69.6
Q ss_pred eEEEeCCcccHHHHHHHhcCC---CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 379 KVLELGCGCGGICSMVAAGSA---DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~---~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
+|||+|||.|-...-+++... -+|.+.|.+|.+++..++|...+. .++.+..-|...++ ...+...+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-----~~~~afv~Dlt~~~---~~~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-----SRVEAFVWDLTSPS---LKEPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-----hhhcccceeccchh---ccCCCCcCcc
Confidence 799999999944444444332 389999999999999999877654 23444444444332 1123567899
Q ss_pred cEEEEeceee--CCCChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTDVSY--IPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d~~y--~~~~~~~l~~~~~~ll~~~~g 486 (564)
|+|++-=++- +++.....++.+.++| +|+|
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~ll-KPGG 177 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLL-KPGG 177 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHh-CCCc
Confidence 9998543332 3667888999999999 9998
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.6e-05 Score=67.81 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=73.5
Q ss_pred CeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC-cc
Q 008457 378 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG-FE 456 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~-fD 456 (564)
..|+|+.||.|+-++.++.. ..+|+++|+++.-++.++.|++.-+.. ++|.+..-||.+. +..+.... +|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~---~~I~~i~gD~~~~-----~~~~~~~~~~D 71 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVA---DNIDFICGDFFEL-----LKRLKSNKIFD 71 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-G---GGEEEEES-HHHH-----GGGB------S
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEeCCHHHH-----Hhhcccccccc
Confidence 36999999999888888775 568999999999999999999998864 6788888888642 11122222 89
Q ss_pred EEEEece----------eeCC------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHH----
Q 008457 457 VILGTDV----------SYIP------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ---- 516 (564)
Q Consensus 457 ~Ii~~d~----------~y~~------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---- 516 (564)
+|+++.. .|+- -....+++...++. . . ++.+-+|+.+...+.+.+.+
T Consensus 72 ~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t-~-----------n-v~l~LPRn~dl~ql~~~~~~l~~~ 138 (163)
T PF09445_consen 72 VVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT-P-----------N-VVLFLPRNSDLNQLSQLTRELFGP 138 (163)
T ss_dssp EEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S-------------EEEEEETTB-HHHHHHT----T-T
T ss_pred EEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhhC-C-----------C-EEEEeCCCCCHHHHHHHhccccCC
Confidence 9987642 2322 14555666655555 2 2 23345787777666655322
Q ss_pred -cCCeEEEEc
Q 008457 517 -CGFRLVDKW 525 (564)
Q Consensus 517 -~g~~~~~~~ 525 (564)
..+++++.+
T Consensus 139 ~~~~~v~~~~ 148 (163)
T PF09445_consen 139 SKKCEVEQNY 148 (163)
T ss_dssp TEEEEEEEEE
T ss_pred CCeEEEEEeh
Confidence 235555554
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-05 Score=71.09 Aligned_cols=107 Identities=19% Similarity=0.187 Sum_probs=85.2
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccc--cCCCeeEEEecCCcccccCCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
...+...|+.+|++-|+|+|.++..+++. .|..+++.+|+.....+.|++.++. .++++++...|+....+ ....
T Consensus 98 ~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF--~~ks 175 (314)
T KOG2915|consen 98 LSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF--LIKS 175 (314)
T ss_pred HHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc--cccc
Confidence 34455689999999999999999999988 6788999999999888888887654 45889999999987766 3346
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
..+|.|+. -+| .+..++..++..||.+|.-++
T Consensus 176 ~~aDaVFL-----DlP--aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 176 LKADAVFL-----DLP--APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccceEEE-----cCC--ChhhhhhhhHHHhhhcCceEE
Confidence 78999988 333 455678888889998875443
|
|
| >KOG2497 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-06 Score=81.64 Aligned_cols=132 Identities=26% Similarity=0.256 Sum_probs=87.0
Q ss_pred ccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCC
Q 008457 348 HTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF 427 (564)
Q Consensus 348 ~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~ 427 (564)
.....+|..+|+++..|.+++.+++....+.+|.++|||++ +...++++...-|...|-...+.-++..+...+.....
T Consensus 62 ~~~~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~-~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (262)
T KOG2497|consen 62 FLLARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIA-LKHVLAARVPDCVVTLDSLRCAGLLLEEIILLSRDLSL 140 (262)
T ss_pred HHHHHhccccchHHHHHHHHHhhCcccccccchHhhccCHH-HHHHHHHhcccceecCCccCcHHHHHHHHHhccccccc
Confidence 56688999999999999999999999889999999999998 44445555554455555444444444444444333222
Q ss_pred CCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhcc
Q 008457 428 LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASS 484 (564)
Q Consensus 428 ~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~ 484 (564)
...-+...+.|....... ......+|+|+++|++|. ....+++.++..+|...
T Consensus 141 ~~~~~~~~~~~~~~~~~~---~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~~ 193 (262)
T KOG2497|consen 141 EVRDSAPELNQAFLESKP---ETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLRW 193 (262)
T ss_pred cccccchhHHHHHHhcCc---ccccchhhheeccCeeeh-hhhhHHHHHHHHHHHhc
Confidence 222333333332211111 112335999999999999 88999999999987333
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00014 Score=67.54 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=97.2
Q ss_pred CCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCC
Q 008457 351 RSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLA 429 (564)
Q Consensus 351 ~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~ 429 (564)
-+.|.++++.++.-+.|+.++..+ .|++||=+|=.- +.++.++. ..+++|+.+|+++.+++.+++.+...++.
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~gdL-~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~---- 93 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAERGDL-EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP---- 93 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------
T ss_pred cccccccHHHHHHHHHHHHhcCcc-cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc----
Confidence 356788999999999999998765 999999999775 24444443 34679999999999999999999988862
Q ss_pred ceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh--
Q 008457 430 KLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-- 507 (564)
Q Consensus 430 ~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~-- 507 (564)
+++...|..+. .. +...++||+++ .|..|..+.+..++..--..| +..| ...|+++..+..+.
T Consensus 94 -i~~~~~DlR~~-LP----~~~~~~fD~f~-TDPPyT~~G~~LFlsRgi~~L-k~~g-------~~gy~~~~~~~~s~~~ 158 (243)
T PF01861_consen 94 -IEAVHYDLRDP-LP----EELRGKFDVFF-TDPPYTPEGLKLFLSRGIEAL-KGEG-------CAGYFGFTHKEASPDK 158 (243)
T ss_dssp -EEEE---TTS--------TTTSS-BSEEE-E---SSHHHHHHHHHHHHHTB--STT--------EEEEEE-TTT--HHH
T ss_pred -eEEEEeccccc-CC----HHHhcCCCEEE-eCCCCCHHHHHHHHHHHHHHh-CCCC-------ceEEEEEecCcCcHHH
Confidence 78888877654 11 22346999876 899999999999999998999 6533 25677777765433
Q ss_pred -hHHHHHHHHcCCeEEEEc
Q 008457 508 -PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 508 -~~~~~~~~~~g~~~~~~~ 525 (564)
..+.+.+.+.||-+..+.
T Consensus 159 ~~~~Q~~l~~~gl~i~dii 177 (243)
T PF01861_consen 159 WLEVQRFLLEMGLVITDII 177 (243)
T ss_dssp HHHHHHHHHTS--EEEEEE
T ss_pred HHHHHHHHHHCCcCHHHHH
Confidence 246667778999999985
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.8e-05 Score=71.09 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=84.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
.-.++||.|||.|-++--++.....+|-++|..+..++.+++.+..... ....+... .++...+ ...+|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~----~v~~~~~~------gLQ~f~P-~~~~Y 123 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP----RVGEFYCV------GLQDFTP-EEGKY 123 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC----CEEEEEES-------GGG-----TT-E
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC----CcceEEec------CHhhccC-CCCcE
Confidence 5669999999999999888777889999999999999999976554221 11112111 1111111 23599
Q ss_pred cEEEEeceeeC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC--------------ChhHHHHHHHHcCC
Q 008457 456 EVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV--------------DEPSMLSAATQCGF 519 (564)
Q Consensus 456 D~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~--------------~~~~~~~~~~~~g~ 519 (564)
|+|+...|+-+ .+++-.+++.++..| +|+| .+++=-..-.. +...|.+.++++|+
T Consensus 124 DlIW~QW~lghLTD~dlv~fL~RCk~~L-~~~G--------~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl 194 (218)
T PF05891_consen 124 DLIWIQWCLGHLTDEDLVAFLKRCKQAL-KPNG--------VIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGL 194 (218)
T ss_dssp EEEEEES-GGGS-HHHHHHHHHHHHHHE-EEEE--------EEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-
T ss_pred eEEEehHhhccCCHHHHHHHHHHHHHhC-cCCc--------EEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCC
Confidence 99999999866 557888999999999 9987 55543222111 12468888899999
Q ss_pred eEEEEc
Q 008457 520 RLVDKW 525 (564)
Q Consensus 520 ~~~~~~ 525 (564)
++.+.-
T Consensus 195 ~~v~~~ 200 (218)
T PF05891_consen 195 RLVKEE 200 (218)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999864
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00019 Score=64.30 Aligned_cols=106 Identities=25% Similarity=0.411 Sum_probs=73.6
Q ss_pred EEEEcCCccccHHHHHHhCCC-cEEEEEeCChHHHHHHHhcccccCCC-eeEEEecCCcccccCCCCC-CceeEEEEccc
Q 008457 79 VLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTETR-VSTFVCDLISDDLSRQISP-SSIDIVTMVFV 155 (564)
Q Consensus 79 VLDiGcG~G~~~~~l~~~~~~-~~v~~iD~s~~~l~~a~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~-~~fD~V~~~~v 155 (564)
++|+|||+|... .+....+. ..++++|+++.++..++......... +.+...+.... ..++.. ..||++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG--VLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC--CCCCCCCCceeEEeeeee
Confidence 999999999976 34443222 47999999999998866554321111 56777776542 124455 48999944444
Q ss_pred ccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCc
Q 008457 156 LSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190 (564)
Q Consensus 156 l~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~ 190 (564)
+++.. ....+.++.+.|+|+|.+++.......
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 45553 788999999999999999998766543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.1e-05 Score=73.73 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=71.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++|||||+++| .+.+.++. ...+|+.+|.+++..+.+++|++..++. ++|.+..-+. .+.+..+.
T Consensus 78 ~~ak~iLEiGT~~G-ySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~---~~I~~~~G~a-----~e~L~~l~ 148 (247)
T PLN02589 78 INAKNTMEIGVYTG-YSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA---HKIDFREGPA-----LPVLDQMI 148 (247)
T ss_pred hCCCEEEEEeChhh-HHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC---CceEEEeccH-----HHHHHHHH
Confidence 36679999999999 55444433 2458999999999999999999998875 5676654432 22332321
Q ss_pred -----CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 452 -----NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 452 -----~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.++||+|+ .|. +...+...++.+.++| +++|
T Consensus 149 ~~~~~~~~fD~iF-iDa--dK~~Y~~y~~~~l~ll-~~GG 184 (247)
T PLN02589 149 EDGKYHGTFDFIF-VDA--DKDNYINYHKRLIDLV-KVGG 184 (247)
T ss_pred hccccCCcccEEE-ecC--CHHHhHHHHHHHHHhc-CCCe
Confidence 36899987 332 3666788888888999 9887
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00011 Score=67.86 Aligned_cols=133 Identities=21% Similarity=0.146 Sum_probs=92.6
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc-eeEEEEc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS-IDIVTMV 153 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~-fD~V~~~ 153 (564)
+.+++|||+|.|.-+..|+-.+|+.+|+.+|....-+...+.-....+ .|+++++..+.+... ... ||+|++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-----~~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-----EKKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-----ccccCcEEEee
Confidence 689999999999999999988899999999999877666655544333 568888888754321 122 9999997
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.+ ..+..++.-+..++|+||.+++.-..... . -..+........|+
T Consensus 143 Av------a~L~~l~e~~~pllk~~g~~~~~k~~~~~------------------------~----e~~e~~~a~~~~~~ 188 (215)
T COG0357 143 AV------ASLNVLLELCLPLLKVGGGFLAYKGLAGK------------------------D----ELPEAEKAILPLGG 188 (215)
T ss_pred hc------cchHHHHHHHHHhcccCCcchhhhHHhhh------------------------h----hHHHHHHHHHhhcC
Confidence 76 23455777788999999987652111000 0 13455566667788
Q ss_pred cEEEeeeeeccccc
Q 008457 234 DVEELGLCCKQVEN 247 (564)
Q Consensus 234 ~~~~~~~~~~~~~~ 247 (564)
.+..+.....+...
T Consensus 189 ~~~~~~~~~~p~~~ 202 (215)
T COG0357 189 QVEKVFSLTVPELD 202 (215)
T ss_pred cEEEEEEeecCCCC
Confidence 88776665545443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.1e-05 Score=71.67 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=50.5
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
++.+.+.....++.+|||+|||+|.++..++..+ .+|+++|.++.+++.++.++.. ..++.+..-|..
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~ 85 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDAL 85 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchh
Confidence 4455544455578899999999998888887766 4699999999999999987643 134555555544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.3e-05 Score=72.02 Aligned_cols=98 Identities=23% Similarity=0.230 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++..|+|+-||.|.++..+++..++..|+++|++|.+++.+++..... ...+....+|..... +.+.||.|+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~-----~~~~~drvi 174 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL-----PEGKFDRVI 174 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------TT-EEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc-----CccccCEEE
Confidence 6789999999999999999999666889999999999999998876433 356788889985421 368899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEE
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~li 182 (564)
++.--. ...+|..+.+++++||++-
T Consensus 175 m~lp~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp E--TSS------GGGGHHHHHHHEEEEEEEE
T ss_pred ECChHH------HHHHHHHHHHHhcCCcEEE
Confidence 855311 2247888999999998863
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.1e-05 Score=73.25 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=73.6
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCc
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
....+.+||=||.|.|..++.+++. + .+|+.+|+++.+++.+++.... ...+++.+.. +. .-..++
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~------~~~~~~ 139 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL------DLDIKK 139 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh------hccCCc
Confidence 3467899999999999999999987 3 4999999999999999995432 2345655531 11 112368
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
||+|++-.. ....+++.+++.|+|||.++..
T Consensus 140 fDVIIvDs~-------~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 140 YDLIICLQE-------PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CCEEEEcCC-------CChHHHHHHHHhcCCCcEEEEC
Confidence 999998542 1246889999999999999874
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.1e-05 Score=73.42 Aligned_cols=86 Identities=16% Similarity=0.109 Sum_probs=68.5
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCC
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 143 (564)
...+.+.....++..|||||+|.|.+|..|++. +.+|+++++++.++...++... ...+++.+.+|+...+++.-.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~- 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPSLA- 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchhhc-
Confidence 345555666677899999999999999999999 6789999999999999998875 457899999999776552110
Q ss_pred CCceeEEEEccc
Q 008457 144 PSSIDIVTMVFV 155 (564)
Q Consensus 144 ~~~fD~V~~~~v 155 (564)
.++.|++|--
T Consensus 95 --~~~~vVaNlP 104 (259)
T COG0030 95 --QPYKVVANLP 104 (259)
T ss_pred --CCCEEEEcCC
Confidence 5677877654
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.5e-06 Score=82.05 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=86.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++..++|+|||.|.....+... ..++++|+|.++..+.++........ ....++.+|+.. .|++++.||.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~----~~fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGK----MPFEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhc----CCCCccccCcEE
Confidence 56678999999999998888765 36889999999998888876543222 233345666643 267999999999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+..+.+|.+ +...++++++|+++|||.++..++.
T Consensus 184 ~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 184 FLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred EEeecccCC--cHHHHHHHHhcccCCCceEEeHHHH
Confidence 999999996 7889999999999999999997654
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00013 Score=72.84 Aligned_cols=138 Identities=20% Similarity=0.198 Sum_probs=85.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..++||.||+|.|+++..++.. ...+|+++|+++++++.+++++..+.......++++..-| ...-+ ....++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D-----a~~~L-~~~~~~ 176 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND-----ARAEL-EKRDEK 176 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEECh-----hHHHH-hhCCCC
Confidence 4579999999999888777764 4579999999999999999987665322222455555332 12222 223568
Q ss_pred ccEEEEeceeeCCC--------ChHHHHH-HHHHHhhccCCCCCCCCCcEEEEEEeecc---CC--hhHHHHHHHHcCCe
Q 008457 455 FEVILGTDVSYIPE--------AILPLFA-TAKELTASSNKSLREDQQPAFILCHIFRQ---VD--EPSMLSAATQCGFR 520 (564)
Q Consensus 455 fD~Ii~~d~~y~~~--------~~~~l~~-~~~~ll~~~~g~~~~~~~~~~~~~~~~r~---~~--~~~~~~~~~~~g~~ 520 (564)
||+|+ .|+ .++. .-..+++ .+++.| +|+| ++++-..... .. .......+++ -|.
T Consensus 177 yDvIi-~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L-~p~G--------vlv~q~~s~~~~~~~~~~~~i~~tl~~-vF~ 244 (336)
T PLN02823 177 FDVII-GDL-ADPVEGGPCYQLYTKSFYERIVKPKL-NPGG--------IFVTQAGPAGILTHKEVFSSIYNTLRQ-VFK 244 (336)
T ss_pred ccEEE-ecC-CCccccCcchhhccHHHHHHHHHHhc-CCCc--------EEEEeccCcchhccHHHHHHHHHHHHH-hCC
Confidence 99998 564 2321 1235666 889999 9988 6655433211 11 1244555655 355
Q ss_pred EEEEcCCCCCC
Q 008457 521 LVDKWPSKNSA 531 (564)
Q Consensus 521 ~~~~~~~~~~~ 531 (564)
....+....|+
T Consensus 245 ~v~~y~~~vPs 255 (336)
T PLN02823 245 YVVPYTAHVPS 255 (336)
T ss_pred CEEEEEeecCC
Confidence 55555554443
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.3e-05 Score=79.80 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
++.+|||++||+|..+..++...+..+|+++|+++.+++.++++....+ .++.+.+.|+... +. ..+.||+|++.
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~-l~---~~~~fD~V~lD 132 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL-LH---EERKFDVVDID 132 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH-Hh---hcCCCCEEEEC
Confidence 3468999999999999999887544589999999999999998865433 3456788887432 11 04579999984
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
- . - ....++....+.+++||.++++
T Consensus 133 P-~-G----s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 133 P-F-G----SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C-C-C----CcHHHHHHHHHHhcCCCEEEEE
Confidence 3 2 1 2346788877888999999997
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.2e-05 Score=78.00 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=83.4
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeE
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
.+.++.+|||++||.|.=+.+++.... ...+++.|+++..+..++++....+ .++.+...|..... ....+.||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~---~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG---AALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh---hhchhhcCe
Confidence 557899999999999999999998743 4689999999999999988876544 45677777764321 112457999
Q ss_pred EEE----cc--cccCC-------Chh-------HHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 150 VTM----VF--VLSAV-------SPE-------KMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 150 V~~----~~--vl~~~-------~~~-------~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
|++ .. ++..- +.+ ....+|..+.++|||||+|+.++=...
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 995 21 22221 111 236789999999999999988754443
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.6e-06 Score=75.84 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCccc----ccCCCC--CCce
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD----LSRQIS--PSSI 147 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~----~~~~~~--~~~f 147 (564)
++.+|||+||++|.|+..++++. +..+|+|+|+.+.. ....+.+.++|+.... +..-+. .+++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----------PLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc----------cccceeeeecccchhhHHHhhhhhccccccCc
Confidence 56999999999999999999885 46899999998751 1123444445543221 111112 2689
Q ss_pred eEEEEcccccCCC---------hhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 148 DIVTMVFVLSAVS---------PEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 148 D~V~~~~vl~~~~---------~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
|+|+|-.+..... .+.....+.-+...|+|||.+++..+.
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 9999966322211 122334445555779999999987655
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.7e-05 Score=68.26 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=76.8
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcE---------EEEEeCChHHHHHHHhcccccC--CCeeEEEec
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVF---------VYACDFSPRAVNLVMTHKDFTE--TRVSTFVCD 132 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~---------v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d 132 (564)
...+..+....++..|||--||+|.+....+...+... ++|.|+++.+++.|+.+....+ ..+.+.+.|
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 33444455557889999999999999877766644544 8999999999999998875433 457888888
Q ss_pred CCcccccCCCCCCceeEEEEcccccCC-C-----hhHHHHHHHHHHhccCCCeEEEE
Q 008457 133 LISDDLSRQISPSSIDIVTMVFVLSAV-S-----PEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 133 ~~~~~~~~~~~~~~fD~V~~~~vl~~~-~-----~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+.... +.++++|+|+++--...- . .+-...+++++.++|++...+++
T Consensus 97 ~~~l~----~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 97 ARELP----LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGG----GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhhcc----cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 86543 467899999996544321 1 12234677888899999444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=66.58 Aligned_cols=130 Identities=15% Similarity=0.215 Sum_probs=80.7
Q ss_pred ceechhHH--HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceE
Q 008457 355 LMLWESAH--LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 432 (564)
Q Consensus 355 ~~~W~~~~--~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~ 432 (564)
...||-.. ...+|+...+ .+..|.|+|||-+.++..+. ...+|...|+-. .| ..|.
T Consensus 52 v~~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva-----------~n------~~Vt 109 (219)
T PF05148_consen 52 VKKWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVA-----------PN------PRVT 109 (219)
T ss_dssp HCTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH----S---EEEEESS------------SS------TTEE
T ss_pred HhcCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhcc--cCceEEEeeccC-----------CC------CCEE
Confidence 45787765 4778887654 56799999999986664332 234699999842 11 1222
Q ss_pred EEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC-ChhHHH
Q 008457 433 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV-DEPSML 511 (564)
Q Consensus 433 ~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~-~~~~~~ 511 (564)
+. |-.+ .|++++.+|++|.+=-+.. .++..++.+..|+| +++| .+.++-...+. ..+.|.
T Consensus 110 ac--dia~-------vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvL-K~~G--------~L~IAEV~SRf~~~~~F~ 170 (219)
T PF05148_consen 110 AC--DIAN-------VPLEDESVDVAVFCLSLMG-TNWPDFIREANRVL-KPGG--------ILKIAEVKSRFENVKQFI 170 (219)
T ss_dssp ES---TTS--------S--TT-EEEEEEES---S-S-HHHHHHHHHHHE-EEEE--------EEEEEEEGGG-S-HHHHH
T ss_pred Ee--cCcc-------CcCCCCceeEEEEEhhhhC-CCcHHHHHHHHhee-ccCc--------EEEEEEecccCcCHHHHH
Confidence 21 1111 1567889999997655554 45899999999999 9988 88888776665 457899
Q ss_pred HHHHHcCCeEEEEc
Q 008457 512 SAATQCGFRLVDKW 525 (564)
Q Consensus 512 ~~~~~~g~~~~~~~ 525 (564)
+.+.+.||++....
T Consensus 171 ~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 171 KALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHCTTEEEEEEE
T ss_pred HHHHHCCCeEEecc
Confidence 99999999999864
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00045 Score=64.69 Aligned_cols=116 Identities=14% Similarity=0.062 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC-----------CCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-----------FLA 429 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~-----------~~~ 429 (564)
...|.+|+.... ..++.+||..|||.|.-...++.++. +|+++|+|+.+++.+.+. |++.. ...
T Consensus 29 np~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e---~~~~~~~~~~~~~~~~~~~ 103 (226)
T PRK13256 29 NEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQ---NTINYEVIHGNDYKLYKGD 103 (226)
T ss_pred CHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHH---cCCCcceecccccceeccC
Confidence 455666665532 23678999999999966666666554 699999999999987552 11110 113
Q ss_pred ceEEEEeecCCCccchhhhhhcCCCccEEE--EeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 430 KLITKRLEWGNRDHIEAIKEENNEGFEVIL--GTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 430 ~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii--~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.+.+..-|+-+.+.. .-..++||+|+ ++=|-..++.....++.+.++| +|+|
T Consensus 104 ~i~~~~gD~f~l~~~----~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL-~pgg 157 (226)
T PRK13256 104 DIEIYVADIFNLPKI----ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVC-SNNT 157 (226)
T ss_pred ceEEEEccCcCCCcc----ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHh-CCCc
Confidence 455554444322100 00125799977 3334456788899999999999 9976
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.7e-05 Score=73.85 Aligned_cols=110 Identities=21% Similarity=0.182 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
..+.+|||+=|=||.++...+..+ ..+|+++|.|..+++.|+++...++ .++++++.|+...--... ..++||+|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~-~~~~fD~I 199 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK-KGGRFDLI 199 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH-HTT-EEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh-cCCCCCEE
Confidence 468999999999999999877652 3479999999999999999875443 578899999854211000 24689999
Q ss_pred EE---cccccCCC-hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 151 TM---VFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 151 ~~---~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++ .+.=.... ..+...++..+.++|+|||.|++..
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 99 12111111 3566788999999999999988753
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.2e-05 Score=73.48 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=50.2
Q ss_pred CCCeEEEeCCcccHH-HHHHHhcCCCEEEEEcCChhHHHHHHHHHHhc-CCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGI-CSMVAAGSADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l-~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..-++||||+|..++ +++.+....-+++|||+++.+++.|++|++.| ++. ++|.+....=. ...+..+. ...+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~---~~I~l~~~~~~-~~i~~~i~-~~~e 176 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE---SRIELRKQKNP-DNIFDGII-QPNE 176 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T---TTEEEEE--ST--SSTTTST-T--S
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc---cceEEEEcCCc-cccchhhh-cccc
Confidence 356899999999755 44444455679999999999999999999999 775 67777644311 11222221 2345
Q ss_pred CccEEEEeceeeCCC
Q 008457 454 GFEVILGTDVSYIPE 468 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~ 468 (564)
.||+.+++..+|...
T Consensus 177 ~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 177 RFDFTMCNPPFYSSQ 191 (299)
T ss_dssp -EEEEEE-----SS-
T ss_pred eeeEEecCCccccCh
Confidence 899999998888754
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00016 Score=65.80 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC----CCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR----QISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~----~~~~~~fD 148 (564)
.++.+|+|+|+-.|.|+..+++. .++..|+++|+.|- ....++.++++|++..+... .+....+|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc----------ccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 67999999999999999998887 34566999999662 12345899999997765322 33455689
Q ss_pred EEEEcccc--------cCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 149 IVTMVFVL--------SAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 149 ~V~~~~vl--------~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
+|++-..- +|.- ..-...++.-+..+|+|||.+++..+...
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 99983322 2321 12233455566789999999999876543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00022 Score=68.34 Aligned_cols=131 Identities=10% Similarity=-0.023 Sum_probs=85.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
..++||=+|-|-|+....++... .+|+++|+++++++.+++-+-.........++++.. |-. +...++|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~--------~~~~~~f 140 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLL--------DLDIKKY 140 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhh--------hccCCcC
Confidence 45899999999998888888754 499999999999999998433211112234555543 211 1123689
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEEEEcCCCCCCC
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKWPSKNSAS 532 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~ 532 (564)
|+|| .|..|. +.+.+.+++.| +++| .++.-...-.... ......+++ .|..+.-+....|..
T Consensus 141 DVII-vDs~~~----~~fy~~~~~~L-~~~G--------i~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v~~y~~~vp~~ 205 (262)
T PRK00536 141 DLII-CLQEPD----IHKIDGLKRML-KEDG--------VFISVAKHPLLEHVSMQNALKNMGD-FFSIAMPFVAPLRIL 205 (262)
T ss_pred CEEE-EcCCCC----hHHHHHHHHhc-CCCc--------EEEECCCCcccCHHHHHHHHHHHHh-hCCceEEEEecCCCc
Confidence 9998 687655 56778999999 9988 5555333222222 234555555 788666654444443
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00019 Score=66.32 Aligned_cols=123 Identities=16% Similarity=0.186 Sum_probs=88.0
Q ss_pred EEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCc-eeEEEEccc
Q 008457 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSS-IDIVTMVFV 155 (564)
Q Consensus 79 VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~-fD~V~~~~v 155 (564)
|.||||--|.+...|++.+...+++++|+++.-++.|++.....+ .++++..+|-.. +++.+. .|.|+...+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-----~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-----VLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-----G--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-----ccCCCCCCCEEEEecC
Confidence 689999999999999999766689999999999999999875433 678899998543 234444 788888664
Q ss_pred ccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcE
Q 008457 156 LSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDV 235 (564)
Q Consensus 156 l~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 235 (564)
=. ..+..+|.+....++....|++... -....++++|.+.||.+
T Consensus 76 GG----~lI~~ILe~~~~~~~~~~~lILqP~--------------------------------~~~~~LR~~L~~~gf~I 119 (205)
T PF04816_consen 76 GG----ELIIEILEAGPEKLSSAKRLILQPN--------------------------------THAYELRRWLYENGFEI 119 (205)
T ss_dssp -H----HHHHHHHHHTGGGGTT--EEEEEES--------------------------------S-HHHHHHHHHHTTEEE
T ss_pred CH----HHHHHHHHhhHHHhccCCeEEEeCC--------------------------------CChHHHHHHHHHCCCEE
Confidence 22 4577788888887776667776421 14788999999999999
Q ss_pred EEeeeee
Q 008457 236 EELGLCC 242 (564)
Q Consensus 236 ~~~~~~~ 242 (564)
++-....
T Consensus 120 ~~E~lv~ 126 (205)
T PF04816_consen 120 IDEDLVE 126 (205)
T ss_dssp EEEEEEE
T ss_pred EEeEEEe
Confidence 8766553
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00024 Score=65.03 Aligned_cols=105 Identities=24% Similarity=0.377 Sum_probs=76.5
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChH----HHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPR----AVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~----~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
+...++.+||-+|+.+|....+++.- .+...|+++++|+. ++..|+++ .|+--+..|+........+- +
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~lv-~ 142 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRMLV-E 142 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhccc-c
Confidence 34478999999999999999999887 55789999999994 45666655 46777888887654433443 4
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.+|+|++--. .+++.+-++.++...||+||.+++.-
T Consensus 143 ~VDvI~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 143 MVDVIFQDVA----QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -EEEEEEE-S----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccEEEecCC----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 8999999443 12577889999999999999999863
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00022 Score=61.59 Aligned_cols=127 Identities=15% Similarity=0.074 Sum_probs=86.2
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~ 433 (564)
.+-|++-.+|+-|...-+.-.|.-|||+|.|||.+.-..++.+. ..++++++|++.+..+.+.... +.+
T Consensus 28 aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~---------~~i 98 (194)
T COG3963 28 AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG---------VNI 98 (194)
T ss_pred eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC---------ccc
Confidence 34567777888888876666888999999999999988888763 5899999999998877664322 122
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
.+.|-. +....+.+.....||.|+++=.+-+-. .--++++.+...| ..+ ++.+-++|.
T Consensus 99 i~gda~--~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl-~~g-------g~lvqftYg 158 (194)
T COG3963 99 INGDAF--DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRL-PAG-------GPLVQFTYG 158 (194)
T ss_pred cccchh--hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhc-CCC-------CeEEEEEec
Confidence 222111 111233445677899999887666533 4456677777777 554 445556655
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=65.86 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=100.2
Q ss_pred CccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCce
Q 008457 352 STGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKL 431 (564)
Q Consensus 352 ~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i 431 (564)
+.+.-.|..+..-+.-+ ...++.+|||-..|-|..++.++.+++.+|+-++.+|.+++++..|=-.-++.. ..+
T Consensus 114 t~~tdP~~Dt~~Kv~~V----~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~--~~i 187 (287)
T COG2521 114 TKGTDPLEDTLAKVELV----KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFE--IAI 187 (287)
T ss_pred ccCcCcHHHHHhhhhee----ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccc--ccc
Confidence 34455566554433322 233789999999999988888888888899999999999999887633322211 122
Q ss_pred EEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC---CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee---ccC
Q 008457 432 ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---EAILPLFATAKELTASSNKSLREDQQPAFILCHIF---RQV 505 (564)
Q Consensus 432 ~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~---r~~ 505 (564)
++. .+ +..+..+.+.+.+||+||--..=+.. -.-+.+-+.+.++| +++| ...=|+..+- |..
T Consensus 188 ~ii---lG--D~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiL-krgG------rlFHYvG~Pg~ryrG~ 255 (287)
T COG2521 188 KII---LG--DAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRIL-KRGG------RLFHYVGNPGKRYRGL 255 (287)
T ss_pred EEe---cc--cHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHc-CcCC------cEEEEeCCCCcccccC
Confidence 322 22 33455566788899999843332221 13467889999999 9988 2122222222 333
Q ss_pred Ch-hHHHHHHHHcCCeEEEEc
Q 008457 506 DE-PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 506 ~~-~~~~~~~~~~g~~~~~~~ 525 (564)
+. ....+.+++.||.++...
T Consensus 256 d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 256 DLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred ChhHHHHHHHHhcCceeeeee
Confidence 32 467889999999976654
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=1e-05 Score=68.56 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=63.6
Q ss_pred CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccC
Q 008457 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFS 220 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (564)
+|.+++.|+|++-++++|+..++-..++++++|.|||||+|-++.+...-.-..... ... .... .+.....+....+
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~-~vq-vggp-gpndhP~~r~v~t 118 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQH-DVQ-VGGP-GPNDHPLHRIVKT 118 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhh-hhh-ccCC-CCCCCcHHHHHHH
Confidence 678999999999999999998888999999999999999999987654322111111 000 0000 0000112222447
Q ss_pred HHHHHHHHHhCCCcEEE
Q 008457 221 NDFLTSLFKENGFDVEE 237 (564)
Q Consensus 221 ~~~l~~~l~~aGf~~~~ 237 (564)
...+..++.++||.+.-
T Consensus 119 ~r~m~n~~m~~~~~~kl 135 (185)
T COG4627 119 MRMMFNGFMDAGFVVKL 135 (185)
T ss_pred HHHHHHHHHhhhheehh
Confidence 88888999999997643
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=64.69 Aligned_cols=145 Identities=18% Similarity=0.147 Sum_probs=89.6
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHH----------HHHHHhcccccCCCeeEEEecCCccc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRA----------VNLVMTHKDFTETRVSTFVCDLISDD 137 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~----------l~~a~~~~~~~~~~i~~~~~d~~~~~ 137 (564)
.+....++.+|+|+=.|.|.+++.|+.. .|...|++.-..+.. -..+++.. ..|++.+-.+....
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~---~aN~e~~~~~~~A~- 117 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV---YANVEVIGKPLVAL- 117 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh---hhhhhhhCCccccc-
Confidence 3444589999999999999999999987 566678876554431 11111111 12222222222111
Q ss_pred ccCCCCCCceeEEEEcccccC-----CChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCC
Q 008457 138 LSRQISPSSIDIVTMVFVLSA-----VSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGD 212 (564)
Q Consensus 138 ~~~~~~~~~fD~V~~~~vl~~-----~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (564)
+ +.+..|++..+..-|- ++......+...+++.|||||++++.++......... +
T Consensus 118 ---~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~----------------d 177 (238)
T COG4798 118 ---G-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS----------------D 177 (238)
T ss_pred ---C-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh----------------h
Confidence 1 3445566665333221 2245677899999999999999999887653321111 1
Q ss_pred CceeeccCHHHHHHHHHhCCCcEEE
Q 008457 213 GTRAFYFSNDFLTSLFKENGFDVEE 237 (564)
Q Consensus 213 ~~~~~~~~~~~l~~~l~~aGf~~~~ 237 (564)
....++.+...+....+.+||+...
T Consensus 178 t~~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 178 TITLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred hhhhcccChHHHHHHHHhhcceeee
Confidence 1122345788999999999998865
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.3e-05 Score=72.40 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHH-HHHHhcCCCC-------CCCceE
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLA-QNVTANLKPP-------FLAKLI 432 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~-~n~~~n~~~~-------~~~~i~ 432 (564)
+..|.+|+.. .....+.+||..|||.|.-...++.+ +.+|+++|+++.+++.+. +|........ ..++|.
T Consensus 23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 5678888776 23346779999999999666666665 458999999999999873 3322111110 123344
Q ss_pred EEEeecCCCccchhhhhhcCCCccEEEEec--eeeCCCChHHHHHHHHHHhhccCCCCCCCCCcE-EEEEEeecc---CC
Q 008457 433 TKRLEWGNRDHIEAIKEENNEGFEVILGTD--VSYIPEAILPLFATAKELTASSNKSLREDQQPA-FILCHIFRQ---VD 506 (564)
Q Consensus 433 ~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d--~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~-~~~~~~~r~---~~ 506 (564)
+..-|.-+. .+...++||+|+=.- |-..++..+...+.+.++| +|+| . ++++..... ..
T Consensus 101 ~~~gDfF~l------~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll-~p~g--------~~lLi~l~~~~~~~~G 165 (218)
T PF05724_consen 101 IYCGDFFEL------PPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLL-KPGG--------RGLLITLEYPQGEMEG 165 (218)
T ss_dssp EEES-TTTG------GGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCE-EEEE--------EEEEEEEES-CSCSSS
T ss_pred EEEcccccC------ChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHh-CCCC--------cEEEEEEEcCCcCCCC
Confidence 544444321 111224799988332 3345788999999999999 9987 4 344433221 11
Q ss_pred h-----hHHHHHHHHcCCeEEEEcC
Q 008457 507 E-----PSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 507 ~-----~~~~~~~~~~g~~~~~~~~ 526 (564)
. ..-+..+-..+|+++.+..
T Consensus 166 PPf~v~~~ev~~l~~~~f~i~~l~~ 190 (218)
T PF05724_consen 166 PPFSVTEEEVRELFGPGFEIEELEE 190 (218)
T ss_dssp SS----HHHHHHHHTTTEEEEEEEE
T ss_pred cCCCCCHHHHHHHhcCCcEEEEEec
Confidence 1 1233333347999888864
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.8e-05 Score=71.19 Aligned_cols=142 Identities=20% Similarity=0.222 Sum_probs=77.2
Q ss_pred hhHHHHHHHHhcCCCCC--CCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEE
Q 008457 359 ESAHLMAAVLARNPTIV--AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK 434 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~--~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~ 434 (564)
.|+..|.+.+....-+. .+.+||||||+.|+.+-.++... ..+|+++|+.+. ... ..+...
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~----~~~~~i 68 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL----QNVSFI 68 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-----TTEEBT
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc----cceeee
Confidence 46777888887766333 45899999999999999999887 579999999765 000 001111
Q ss_pred EeecCCCccchhhhhh---cCCCccEEEEeceeeCC------------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 008457 435 RLEWGNRDHIEAIKEE---NNEGFEVILGTDVSYIP------------EAILPLFATAKELTASSNKSLREDQQPAFILC 499 (564)
Q Consensus 435 ~l~w~~~~~~~~~~~~---~~~~fD~Ii~~d~~y~~------------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~ 499 (564)
..|-.+......+... ...+||+|+ +|+-.+. ......+..+..+| +++| .+++-
T Consensus 69 ~~d~~~~~~~~~i~~~~~~~~~~~dlv~-~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L-~~gG--------~~v~K 138 (181)
T PF01728_consen 69 QGDITNPENIKDIRKLLPESGEKFDLVL-SDMAPNVSGDRNIDEFISIRLILSQLLLALELL-KPGG--------TFVIK 138 (181)
T ss_dssp TGGGEEEEHSHHGGGSHGTTTCSESEEE-E-------SSHHSSHHHHHHHHHHHHHHHHHHH-CTTE--------EEEEE
T ss_pred ecccchhhHHHhhhhhccccccCcceec-cccccCCCCchhhHHHHHHHHHHHHHHHHHhhh-cCCC--------EEEEE
Confidence 1110000111122221 226999987 6773221 12333334455668 8877 66654
Q ss_pred EeeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 500 HIFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 500 ~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.-..... ..++..+.. .|+.+++...
T Consensus 139 ~~~~~~~-~~~~~~l~~-~F~~v~~~Kp 164 (181)
T PF01728_consen 139 VFKGPEI-EELIYLLKR-CFSKVKIVKP 164 (181)
T ss_dssp ESSSTTS-HHHHHHHHH-HHHHEEEEE-
T ss_pred eccCccH-HHHHHHHHh-CCeEEEEEEC
Confidence 4443333 366766654 6666666643
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00015 Score=66.43 Aligned_cols=107 Identities=16% Similarity=0.252 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccc--cCCCeeEEEecCCcc--cccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISD--DLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~--~~~~i~~~~~d~~~~--~~~~~~~~~~fD 148 (564)
..++++||||.=||.-+..++...| +.+|+++|+++...+.+.+..+. ....|+++++..... .+......++||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 5689999999999988888887754 68999999999999999765443 347788888876431 112233568999
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.++. .|.- +.-...+.++.+++|+||++++-.
T Consensus 152 faFv----DadK-~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 152 FAFV----DADK-DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEE----ccch-HHHHHHHHHHHhhcccccEEEEec
Confidence 9988 3332 344588999999999999999853
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00013 Score=74.42 Aligned_cols=137 Identities=10% Similarity=0.110 Sum_probs=89.9
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
++.+|..++.++..+..++.+||+-|||| +.+++++++.++|+++++++++++-|+.|+..|++. +.++..-.
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG-~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis----Na~Fi~gq-- 439 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTG-TIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS----NATFIVGQ-- 439 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCC-ceehhhhccccceeeeecChhhcchhhhcchhcCcc----ceeeeecc--
Confidence 46778888888888889999999999999 666666778899999999999999999999999984 33333220
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHH
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA 514 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 514 (564)
..+.+..+..-.-+.-++|.-.|.-- .-.+..+++.+...- .+ ...+|++...+.. ...+.+.|
T Consensus 440 aE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~-~~--------~rlvyvSCn~~t~-ar~v~~lc 503 (534)
T KOG2187|consen 440 AEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYK-NP--------RRLVYVSCNPHTA-ARNVIDLC 503 (534)
T ss_pred hhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhcc-Cc--------cceEEEEcCHHHh-hhhHHHhh
Confidence 11122222211112345555445433 446667777666655 44 3367776666543 12445554
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00033 Score=64.56 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=82.6
Q ss_pred eEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccE
Q 008457 379 KVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV 457 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~ 457 (564)
.+||||||.|.....+|... ...++++|+....+..+...+...++ .++.+...|-.. .+..+ ++++++|-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l----~Nv~~~~~da~~--~l~~~--~~~~~v~~ 91 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL----KNVRFLRGDARE--LLRRL--FPPGSVDR 91 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT----SSEEEEES-CTT--HHHHH--STTTSEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc----cceEEEEccHHH--HHhhc--ccCCchhe
Confidence 89999999998877777654 56999999999999998888888766 567776554332 12111 24578887
Q ss_pred EEEe--ceeeCC------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHc--CCeEEE
Q 008457 458 ILGT--DVSYIP------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC--GFRLVD 523 (564)
Q Consensus 458 Ii~~--d~~y~~------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--g~~~~~ 523 (564)
|... |.-.-. -.-+++++.+.++| +++| .+.+.+-...... ...+.+.+. +|+...
T Consensus 92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L-~~gG--------~l~~~TD~~~y~~-~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVL-KPGG--------ELYFATDVEEYAE-WMLEQFEESHPGFENIE 157 (195)
T ss_dssp EEEES-----SGGGGGGSTTSHHHHHHHHHHE-EEEE--------EEEEEES-HHHHH-HHHHHHHHHSTTEEEE-
T ss_pred EEEeCCCCCcccchhhhhcCCchHHHHHHHHc-CCCC--------EEEEEeCCHHHHH-HHHHHHHhcCcCeEEcc
Confidence 7632 321111 15688999999999 9988 8877765554433 345555553 677663
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00018 Score=72.86 Aligned_cols=145 Identities=15% Similarity=0.108 Sum_probs=82.8
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
+..+..|.+++.+.....++ +||||-||+|.++..++. .+++|+++|.++.+++.|++|+..|++ .++.+...+
T Consensus 179 ~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~-~~~~V~gvE~~~~av~~A~~Na~~N~i----~n~~f~~~~ 252 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAK-KAKKVIGVEIVEEAVEDARENAKLNGI----DNVEFIRGD 252 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHC-CSSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--
T ss_pred HHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHh-hCCeEEEeeCCHHHHHHHHHHHHHcCC----CcceEEEee
Confidence 34566677777665544344 899999999977776654 567899999999999999999999997 456665443
Q ss_pred cCC-------Cccchhhh--hhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh
Q 008457 438 WGN-------RDHIEAIK--EENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP 508 (564)
Q Consensus 438 w~~-------~~~~~~~~--~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~ 508 (564)
-.+ ...+..+. .+....+|+|| .|+.-.-- .+.+++.+. +. ...+|++..+.....
T Consensus 253 ~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vi-lDPPR~G~-~~~~~~~~~----~~--------~~ivYvSCnP~tlaR- 317 (352)
T PF05958_consen 253 AEDFAKALAKAREFNRLKGIDLKSFKFDAVI-LDPPRAGL-DEKVIELIK----KL--------KRIVYVSCNPATLAR- 317 (352)
T ss_dssp SHHCCCHHCCS-GGTTGGGS-GGCTTESEEE-E---TT-S-CHHHHHHHH----HS--------SEEEEEES-HHHHHH-
T ss_pred ccchhHHHHhhHHHHhhhhhhhhhcCCCEEE-EcCCCCCc-hHHHHHHHh----cC--------CeEEEEECCHHHHHH-
Confidence 211 00111111 12234689875 45444332 244455443 33 228888866655432
Q ss_pred HHHHHHHHcCCeEEEEc
Q 008457 509 SMLSAATQCGFRLVDKW 525 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~ 525 (564)
+ +..+. .|+++.++-
T Consensus 318 D-l~~L~-~~y~~~~v~ 332 (352)
T PF05958_consen 318 D-LKILK-EGYKLEKVQ 332 (352)
T ss_dssp H-HHHHH-CCEEEEEEE
T ss_pred H-HHHHh-hcCEEEEEE
Confidence 2 23343 499998875
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=74.88 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=67.5
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCccc--ccC--CC--------
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDD--LSR--QI-------- 142 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~--~~-------- 142 (564)
+.+|||++||+|.++..+++. ..+|+|+|.++.+++.|+++....+ .+++++++|+.... +.. .+
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 357999999999999988887 3589999999999999998865443 47899999985421 100 00
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
...+||+|+.-=-=.-+ -..+++.+.+ |++.++++.
T Consensus 285 ~~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 285 KSYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYISC 320 (362)
T ss_pred cCCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEEe
Confidence 02258999882210111 1234444443 678888763
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0012 Score=62.93 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=93.2
Q ss_pred hHHHHhhhccC----CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc---cc--------------
Q 008457 63 LDKEWGRYFSG----AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK---DF-------------- 121 (564)
Q Consensus 63 ~~~~~~~~l~~----~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~---~~-------------- 121 (564)
+..++..++++ ....+||--|||.|+++.-|+.. |..+-|=++|--|+=...-.. ..
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~s 211 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYS 211 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccc
Confidence 33444444443 45789999999999999999988 455666688777753221100 00
Q ss_pred ----------------------cC--CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCC
Q 008457 122 ----------------------TE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKP 177 (564)
Q Consensus 122 ----------------------~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkp 177 (564)
.+ .....-.+|+... ...+-..+.||+|+.++.+.-- .++-.+|..++.+|||
T Consensus 212 n~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~ev-y~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~ 288 (369)
T KOG2798|consen 212 NSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEV-YGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKP 288 (369)
T ss_pred cccccccccccccCccccccccCCCCCCccccccceeEE-ecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccC
Confidence 00 0000011222110 0001122469999998776655 5888999999999999
Q ss_pred CeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 178 TGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 178 gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
||+++=.-+.........- . ......-++.+++..+.+..||++++..
T Consensus 289 GGvWiNlGPLlYHF~d~~g--~------------~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 289 GGVWINLGPLLYHFEDTHG--V------------ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CcEEEeccceeeeccCCCC--C------------cccccccccHHHHHHHHHhcCcEEEEee
Confidence 9998853222111000000 0 0011224689999999999999998754
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.3e-05 Score=71.26 Aligned_cols=120 Identities=21% Similarity=0.294 Sum_probs=83.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
...++||||+|-|-++...+ ....+|.+|++|..|.+.+++- .-| -...++|.+. +-+|
T Consensus 112 ~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk-~yn---------Vl~~~ew~~t----------~~k~ 170 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKK-NYN---------VLTEIEWLQT----------DVKL 170 (288)
T ss_pred CCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhc-CCc---------eeeehhhhhc----------Ccee
Confidence 45799999999996655443 3345799999999998877652 011 1245677654 2389
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhcc-CCCCCCCCCcEEEEEEee-------------------------ccCCh--
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASS-NKSLREDQQPAFILCHIF-------------------------RQVDE-- 507 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~-~g~~~~~~~~~~~~~~~~-------------------------r~~~~-- 507 (564)
|+|.+-.++-.-.+.-.|++-|..+| +| +| +++++..- |...+
T Consensus 171 dli~clNlLDRc~~p~kLL~Di~~vl-~psng--------rvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v 241 (288)
T KOG3987|consen 171 DLILCLNLLDRCFDPFKLLEDIHLVL-APSNG--------RVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEV 241 (288)
T ss_pred ehHHHHHHHHhhcChHHHHHHHHHHh-ccCCC--------cEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHH
Confidence 99999888877778899999999999 77 44 44444322 21111
Q ss_pred hHHHHHHHHcCCeEEEEc
Q 008457 508 PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 508 ~~~~~~~~~~g~~~~~~~ 525 (564)
.+|.+.++.+|++++-..
T Consensus 242 ~~~~e~lr~~g~~veawT 259 (288)
T KOG3987|consen 242 ARFMELLRNCGYRVEAWT 259 (288)
T ss_pred HHHHHHHHhcCchhhhhh
Confidence 367788899999988543
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0002 Score=71.71 Aligned_cols=126 Identities=14% Similarity=0.214 Sum_probs=79.7
Q ss_pred ccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHh-------CCCcEEEEEeCChHHHHHHHhcccccC---CCeeE
Q 008457 59 DRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-------YPDVFVYACDFSPRAVNLVMTHKDFTE---TRVST 128 (564)
Q Consensus 59 ~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-------~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~ 128 (564)
....+...+.+++...++.+|+|-+||+|.++..+.+. .+..+++|+|+++.++..|+-+..-.+ ....+
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 34555566677777778889999999999998887763 257899999999999998876542211 22347
Q ss_pred EEecCCcccccCCCCCCceeEEEEcccccCC------------------C-hhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 129 FVCDLISDDLSRQISPSSIDIVTMVFVLSAV------------------S-PEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~------------------~-~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
...|....... .....||+|+++--+.-. + ...-..++..+.+.|++||++.+..+
T Consensus 110 ~~~d~l~~~~~--~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 110 IQGDSLENDKF--IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EES-TTTSHSC--TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccc--ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 77776543221 125789999995322111 0 01223588999999999999877543
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00035 Score=67.16 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=65.2
Q ss_pred CCeEEEEcCCccccHHHHHH-h-CCCcEEEEEeCChHHHHHHHhccc---ccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 76 RKDVLEVGCGAGNTIFPLIA-A-YPDVFVYACDFSPRAVNLVMTHKD---FTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~-~-~~~~~v~~iD~s~~~l~~a~~~~~---~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
+.+|+=||||.=-++..+.. . .++..|+++|+++++++.+++-.. ....++.|+++|...... .-..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~----dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY----DLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G----G----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc----ccccCCEE
Confidence 46999999998777655544 3 467889999999999999987654 235788999999864322 23589999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+......- ..+.-.++|.++.+.++||+.+++.
T Consensus 197 ~lAalVg~-~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 197 FLAALVGM-DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEhhhccc-ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 98765442 2346678999999999999998885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00025 Score=73.25 Aligned_cols=109 Identities=23% Similarity=0.233 Sum_probs=79.0
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.+...++.+|||+=||.|.++..|++. ..+|+|+|+++++++.|+++.+.++ .|++|..+++...... ......
T Consensus 286 ~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~-~~~~~~ 362 (432)
T COG2265 286 LEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA-WWEGYK 362 (432)
T ss_pred HHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh-ccccCC
Confidence 34455567899999999999999999976 6789999999999999999887655 5689998887543221 112357
Q ss_pred eeEEEEcccccCCChhHHH-HHHHHHHhccCCCeEEEEEe
Q 008457 147 IDIVTMVFVLSAVSPEKMS-LVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~-~~l~~~~r~LkpgG~lii~~ 185 (564)
+|+|+. --|+.... .+++.+.+ ++|..+++++.
T Consensus 363 ~d~Vvv-----DPPR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 363 PDVVVV-----DPPRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCEEEE-----CCCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence 899988 23333333 34554444 67888888864
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.69 E-value=9e-05 Score=68.50 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=66.7
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcc----------cccCCCeeEEEecCCccc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK----------DFTETRVSTFVCDLISDD 137 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~----------~~~~~~i~~~~~d~~~~~ 137 (564)
.+.+...++...+|+|||.|......+...+-.+.+||++.+...+.|+... .....++++..+|+...+
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 3444557899999999999999888876653445999999999887776422 112356778888876543
Q ss_pred ccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 138 ~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
.... .-...|+|+++... ++ +++...|.++...||+|.+++-
T Consensus 115 ~~~~-~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 115 FVKD-IWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHH-HGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred hHhh-hhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 2100 01346999998763 23 4666777888889999888764
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0044 Score=58.63 Aligned_cols=56 Identities=18% Similarity=0.022 Sum_probs=42.9
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHh
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTA 421 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~ 421 (564)
|.+.+..... .+|..|||--||+| -.+.++.+.+.+.+++|++++..+.+.+.+..
T Consensus 152 l~~~~i~~~s-~~g~~vlDpf~Gsg-tt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 152 SLQPLIESFT-HPNAIVLDPFAGSG-STCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHhC-CCCCEEEeCCCCCC-HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 4444443322 27889999999999 66666667778999999999999988887765
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.69 E-value=7.1e-05 Score=68.15 Aligned_cols=110 Identities=12% Similarity=0.113 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..+.++||+-||+|.++...+.++ ..+|+.+|.++.++...+++....+ .++..+..|+...-....-...+||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 378999999999999999888884 4589999999999999998875433 3577788886432111111467899999
Q ss_pred EcccccCCChhH-HHHHHHHHH--hccCCCeEEEEEecC
Q 008457 152 MVFVLSAVSPEK-MSLVLQNIK--KVLKPTGYVLFRDYA 187 (564)
Q Consensus 152 ~~~vl~~~~~~~-~~~~l~~~~--r~LkpgG~lii~~~~ 187 (564)
+-=-...- . ...++..+. .+|+++|.+++....
T Consensus 120 lDPPY~~~---~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 120 LDPPYAKG---LYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp E--STTSC---HHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred ECCCcccc---hHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 84322221 2 366777776 899999998886433
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.9e-05 Score=66.59 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
....+.|+|+|+|.++...+.. .-+|++++.+|...+.|.++..-.+ .+++++.+|+...++ +..|+|+|-
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f------e~ADvvicE 103 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF------ENADVVICE 103 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc------cccceeHHH
Confidence 3488999999999998877766 5689999999999999999865433 688999999976543 567999995
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
..=..+-.+....++..+...||.++.++=
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 533333235667788888889999998874
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.9e-05 Score=65.62 Aligned_cols=132 Identities=20% Similarity=0.196 Sum_probs=86.8
Q ss_pred CCCCeEEEEcCCccccH-HHHHHhCCCcEEEEEeCChHHHHHHHhccccc----CCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTI-FPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~-~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+.+||++|.|--.++ ..++...|...|...|-+...++..++..... ..++.....+.... .+.....+||
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a--qsq~eq~tFD 105 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA--QSQQEQHTFD 105 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh--HHHHhhCccc
Confidence 34688999999954444 44455567788999999999988776643211 11221211111111 1112446899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHH
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLF 228 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 228 (564)
+|+|..++..- +....+.+.+.+.|+|.|.-++..+-.++ +.+.+.+..
T Consensus 106 iIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg~-----------------------------sL~kF~de~ 154 (201)
T KOG3201|consen 106 IILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSPRRGQ-----------------------------SLQKFLDEV 154 (201)
T ss_pred EEEeccchhHH--HHHHHHHHHHHHHhCcccceeEecCcccc-----------------------------hHHHHHHHH
Confidence 99999987654 56677889999999999997776443322 466677888
Q ss_pred HhCCCcEEEe
Q 008457 229 KENGFDVEEL 238 (564)
Q Consensus 229 ~~aGf~~~~~ 238 (564)
..+||.+...
T Consensus 155 ~~~gf~v~l~ 164 (201)
T KOG3201|consen 155 GTVGFTVCLE 164 (201)
T ss_pred HhceeEEEec
Confidence 8889887644
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.2e-05 Score=65.59 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=66.3
Q ss_pred CCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 377 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
...+-|||+|+|.++.. ++..+.+|++++.+|...+++++|+..++. .++.+..-|-.+ +.-...|
T Consensus 33 ~d~~~DLGaGsGiLs~~-Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~----~n~evv~gDA~~---------y~fe~AD 98 (252)
T COG4076 33 EDTFADLGAGSGILSVV-AAHAAERVIAIEKDPKRARLAEENLHVPGD----VNWEVVVGDARD---------YDFENAD 98 (252)
T ss_pred hhceeeccCCcchHHHH-HHhhhceEEEEecCcHHHHHhhhcCCCCCC----cceEEEeccccc---------ccccccc
Confidence 36899999999955544 455588999999999999999999977776 456555433221 1123568
Q ss_pred EEEEe--ceeeCCCChHHHHHHHHHHhhccCC
Q 008457 457 VILGT--DVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 457 ~Ii~~--d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+|+|- |+..-.+-.-+.++.+-..| +..+
T Consensus 99 vvicEmlDTaLi~E~qVpV~n~vleFL-r~d~ 129 (252)
T COG4076 99 VVICEMLDTALIEEKQVPVINAVLEFL-RYDP 129 (252)
T ss_pred eeHHHHhhHHhhcccccHHHHHHHHHh-hcCC
Confidence 87743 55555555666777777788 6655
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00034 Score=62.96 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+||.||-|-|.....+.++.|. +-+-|+..|..++..+...-....++....+-.. +....++++.||-|+.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~We--Dvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWE--DVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchH--hhhccccccCcceeEee
Confidence 78999999999999988877776554 4457899999999998875444456665555432 22235688999999985
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
..-++. +++..+.+.+.|+|||+|++-+.
T Consensus 177 Ty~e~y--Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 177 TYSELY--EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred chhhHH--HHHHHHHHHHhhhcCCCceEEEe
Confidence 544555 78999999999999999998654
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.2e-05 Score=65.94 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=51.4
Q ss_pred eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCc-eeEEEE
Q 008457 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS-IDIVTM 152 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~-fD~V~~ 152 (564)
.|+|+.||.|..+..+++. ..+|+++|+++..++.|+.+...- ..+|.++++|+..... .+.... +|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~--~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLK--RLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGG--GB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHh--hccccccccEEEE
Confidence 6999999999999999998 567999999999999999886543 3689999999865321 122222 799987
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00075 Score=62.57 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=88.2
Q ss_pred eechhHH--HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEE
Q 008457 356 MLWESAH--LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~--~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~ 433 (564)
.-||-.. ++.++|...+ ....|-|+|||-+-++. .-...|+..|+-+ .| .+|.+
T Consensus 161 ~kWP~nPld~ii~~ik~r~---~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a-----------~~------~~V~~ 216 (325)
T KOG3045|consen 161 KKWPENPLDVIIRKIKRRP---KNIVIADFGCGEAKIAS----SERHKVHSFDLVA-----------VN------ERVIA 216 (325)
T ss_pred HhCCCChHHHHHHHHHhCc---CceEEEecccchhhhhh----ccccceeeeeeec-----------CC------Cceee
Confidence 4465543 4666766553 56789999999885543 3345799999832 11 22222
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC-ChhHHHH
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV-DEPSMLS 512 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~-~~~~~~~ 512 (564)
..+ .+ .++.+++.|++|.|=-+. ..++..++..+.++| +++| .++++-...+. +...|.+
T Consensus 217 cDm--~~-------vPl~d~svDvaV~CLSLM-gtn~~df~kEa~RiL-k~gG--------~l~IAEv~SRf~dv~~f~r 277 (325)
T KOG3045|consen 217 CDM--RN-------VPLEDESVDVAVFCLSLM-GTNLADFIKEANRIL-KPGG--------LLYIAEVKSRFSDVKGFVR 277 (325)
T ss_pred ccc--cC-------CcCccCcccEEEeeHhhh-cccHHHHHHHHHHHh-ccCc--------eEEEEehhhhcccHHHHHH
Confidence 211 11 156778999998765444 446888999999999 9988 89998877665 4467999
Q ss_pred HHHHcCCeEEEEc
Q 008457 513 AATQCGFRLVDKW 525 (564)
Q Consensus 513 ~~~~~g~~~~~~~ 525 (564)
.+.+.||.+.+..
T Consensus 278 ~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 278 ALTKLGFDVKHKD 290 (325)
T ss_pred HHHHcCCeeeehh
Confidence 9999999999885
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00011 Score=66.68 Aligned_cols=97 Identities=7% Similarity=0.105 Sum_probs=75.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
....++|||||.|.+.-.+...+..+++.+|.|-.|++.++.. +. ..+.+..+.- +. +..++..+++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qd-------p~i~~~~~v~-DE----E~Ldf~ens~ 138 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QD-------PSIETSYFVG-DE----EFLDFKENSV 138 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CC-------CceEEEEEec-ch----hcccccccch
Confidence 3457999999999999888888888999999999999887763 11 2233333321 11 1124567899
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
|+||++--++...+++.-+..++..| ||.|
T Consensus 139 DLiisSlslHW~NdLPg~m~~ck~~l-KPDg 168 (325)
T KOG2940|consen 139 DLIISSLSLHWTNDLPGSMIQCKLAL-KPDG 168 (325)
T ss_pred hhhhhhhhhhhhccCchHHHHHHHhc-CCCc
Confidence 99999999999999999999999999 9987
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.57 E-value=7.3e-05 Score=68.67 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=66.3
Q ss_pred CCCeEEEeCCccc----HHHHHHHhc---CC---CEEEEEcCChhHHHHHHHHHHhc----CCC------------C---
Q 008457 376 AGKKVLELGCGCG----GICSMVAAG---SA---DLVVATDGDSIALDLLAQNVTAN----LKP------------P--- 426 (564)
Q Consensus 376 ~~~~vLelG~G~G----~l~~~~~~~---~~---~~v~~tD~~~~~l~~~~~n~~~n----~~~------------~--- 426 (564)
+..+|+-.||+|| .+++++... .. -+|++||+|+.+++.|++-+-.. +++ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999 444444441 12 38999999999999988422111 110 0
Q ss_pred -----CCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceee--CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 008457 427 -----FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY--IPEAILPLFATAKELTASSNKSLREDQQPAFILC 499 (564)
Q Consensus 427 -----~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y--~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~ 499 (564)
....|.+...+..+. ....+.||+|++-+|+- +.+....+++.+.+.| +|+| .+++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~-------~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L-~pgG--------~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDP-------DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSL-KPGG--------YLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGE-EEEE--------EEEE-
T ss_pred eEChHHcCceEEEecccCCC-------CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHc-CCCC--------EEEEe
Confidence 013477777766541 12356999999999863 4667899999999999 9988 77776
Q ss_pred Eeec
Q 008457 500 HIFR 503 (564)
Q Consensus 500 ~~~r 503 (564)
+...
T Consensus 175 ~sE~ 178 (196)
T PF01739_consen 175 HSES 178 (196)
T ss_dssp TT--
T ss_pred cCcc
Confidence 5544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00013 Score=71.02 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=73.9
Q ss_pred CCeEEEeCCccc----HHHHHHHhcC-----CCEEEEEcCChhHHHHHHHHHHhc----CCC------------------
Q 008457 377 GKKVLELGCGCG----GICSMVAAGS-----ADLVVATDGDSIALDLLAQNVTAN----LKP------------------ 425 (564)
Q Consensus 377 ~~~vLelG~G~G----~l~~~~~~~~-----~~~v~~tD~~~~~l~~~~~n~~~n----~~~------------------ 425 (564)
.-+|+-.||+|| .+++++.... .-+|+|||+|+.+++.|++-+-.. +++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 4444444321 237999999999999998653110 100
Q ss_pred -----CCCCceEEEEeecCCCccchhhhhh-cCCCccEEEEeceeeC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 008457 426 -----PFLAKLITKRLEWGNRDHIEAIKEE-NNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFI 497 (564)
Q Consensus 426 -----~~~~~i~~~~l~w~~~~~~~~~~~~-~~~~fD~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~ 497 (564)
.....|.+...+..+. ++ ..+.||+|++.+++.+ .+....+++.+.+.| +|+| .++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~-------~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L-~pgG--------~L~ 259 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAK-------QWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLL-KPDG--------LLF 259 (287)
T ss_pred EEEChHHHccCEEEcccCCCC-------CCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHh-CCCc--------EEE
Confidence 0113344544444332 11 2468999999887643 567999999999999 9988 777
Q ss_pred EEEeec
Q 008457 498 LCHIFR 503 (564)
Q Consensus 498 ~~~~~r 503 (564)
+.+...
T Consensus 260 lG~sEs 265 (287)
T PRK10611 260 AGHSEN 265 (287)
T ss_pred EeCccc
Confidence 765433
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00042 Score=56.80 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=47.5
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP 425 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~ 425 (564)
.+.+++|+|+|+++|--++.++.+++++|++.+.++...+.++.|+..|..-
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~ 77 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNIC 77 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheee
Confidence 3589999999999998888888899999999999999999999999998763
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0007 Score=61.49 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=78.5
Q ss_pred eEEEeCCcccHHHHHHHh--cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 379 KVLELGCGCGGICSMVAA--GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~--~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
+++|+|+|.| ++++.++ ....+|+++|....=+..++.-+..-++ .++.+..-...+ .....+||
T Consensus 51 ~~lDiGSGaG-fPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L----~nv~v~~~R~E~--------~~~~~~fd 117 (184)
T PF02527_consen 51 KVLDIGSGAG-FPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL----SNVEVINGRAEE--------PEYRESFD 117 (184)
T ss_dssp EEEEETSTTT-TTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-----SSEEEEES-HHH--------TTTTT-EE
T ss_pred eEEecCCCCC-ChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC----CCEEEEEeeecc--------cccCCCcc
Confidence 8999999998 6655544 2345899999998877777776666555 346665444332 12457999
Q ss_pred EEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-h-hHHHHHHHHcCCeEEEEc
Q 008457 457 VILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-E-PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 457 ~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~-~-~~~~~~~~~~g~~~~~~~ 525 (564)
+|++--+ ..+..++..+..++ +++| . +++++-+... + ...-..+...|.++..+-
T Consensus 118 ~v~aRAv----~~l~~l~~~~~~~l-~~~G--------~-~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 118 VVTARAV----APLDKLLELARPLL-KPGG--------R-LLAYKGPDAEEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp EEEEESS----SSHHHHHHHHGGGE-EEEE--------E-EEEEESS--HHHHHTHHHHHHCCCEEEEEEE
T ss_pred EEEeehh----cCHHHHHHHHHHhc-CCCC--------E-EEEEcCCChHHHHHHHHhHHHHhCCEEeeec
Confidence 9986553 46889999999999 8876 4 4444544322 2 344555566778777765
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00045 Score=61.47 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=77.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
-.+++|||+|+|+|-.+..-++.+ ...|+..|+.|......+-+.+.++..+.+...|... .+..||+++..
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-------~~~~~Dl~Lag 149 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-------SPPAFDLLLAG 149 (218)
T ss_pred cccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-------CCcceeEEEee
Confidence 468999999999998887777663 4579999999999988888887777888888888753 45789999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCC-CeEEEEEecCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKP-TGYVLFRDYAI 188 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~Lkp-gG~lii~~~~~ 188 (564)
.++..-+ .-.+++. ..+.|+. |-.+++-++..
T Consensus 150 Dlfy~~~--~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 150 DLFYNHT--EADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred ceecCch--HHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 9876442 3445666 5555544 44555555444
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00077 Score=65.50 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=75.9
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 141 (564)
.+...+.+.+...++..|||||+|.|.++..|++. +.+++++|.++.+.+..+++.. ...+++++.+|+...+....
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhh-hcccceeeecchhccccHHh
Confidence 44455666666678999999999999999999999 4889999999999999998765 45789999999976654321
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCC
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKP 177 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkp 177 (564)
+ .+....|+++--. +++ ..++.++...-+.
T Consensus 94 ~-~~~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 94 L-KNQPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp C-SSSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred h-cCCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence 1 2345566665433 442 3455555553333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.001 Score=59.71 Aligned_cols=122 Identities=13% Similarity=0.072 Sum_probs=82.7
Q ss_pred hhHHHHhhhccC--CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccc
Q 008457 62 YLDKEWGRYFSG--AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDD 137 (564)
Q Consensus 62 ~~~~~~~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~ 137 (564)
.+.+.+...+.+ -.+.++||+=+|+|.++...+.++ ..+++.+|.+..+....+++..... .+.+++..|+. .-
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~-~~ 105 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL-RA 105 (187)
T ss_pred HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH-HH
Confidence 344444444443 679999999999999999888885 4589999999999999998876544 67788888876 22
Q ss_pred ccCCCCCCceeEEEEcccccCCChhHHHHHHHH--HHhccCCCeEEEEEec
Q 008457 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQN--IKKVLKPTGYVLFRDY 186 (564)
Q Consensus 138 ~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~--~~r~LkpgG~lii~~~ 186 (564)
+...-..+.||+|+.-=-++.- .-+....+.. -..+|+|+|.+++...
T Consensus 106 L~~~~~~~~FDlVflDPPy~~~-l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 106 LKQLGTREPFDLVFLDPPYAKG-LLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHhcCCCCcccEEEeCCCCccc-hhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 2111122359999994333311 0112233333 5688999999998643
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00095 Score=63.98 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=81.0
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhc--CCCCCCCceEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTAN--LKPPFLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n--~~~~~~~~i~~ 433 (564)
--|=-+.++-.|.. ++..+++||||-||-..-.-..+...++++|+.+..|+.+++....- ......=.+.+
T Consensus 103 NNwIKs~LI~~y~~------~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f 176 (389)
T KOG1975|consen 103 NNWIKSVLINLYTK------RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVF 176 (389)
T ss_pred hHHHHHHHHHHHhc------cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEE
Confidence 44666766666653 56789999999996665555567789999999999999998654421 11000001222
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEEece-eeC---CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDV-SYI---PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~-~y~---~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
..-|.... .+..+.+..+.+||+|=+.=+ .|. .+...-+++.+...| +||| +||-+.+..
T Consensus 177 ~~~Dc~~~-~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~L-kpGG--------~FIgTiPds 240 (389)
T KOG1975|consen 177 IAADCFKE-RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCL-KPGG--------VFIGTIPDS 240 (389)
T ss_pred EEeccchh-HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhc-CCCc--------EEEEecCcH
Confidence 22222211 111112223456997654322 343 456777889999999 9998 777765543
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00046 Score=66.29 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=75.8
Q ss_pred CCCeEEEeCCccc----HHHHHHHhcC------CCEEEEEcCChhHHHHHHHHHHh-----cCCCC---------C----
Q 008457 376 AGKKVLELGCGCG----GICSMVAAGS------ADLVVATDGDSIALDLLAQNVTA-----NLKPP---------F---- 427 (564)
Q Consensus 376 ~~~~vLelG~G~G----~l~~~~~~~~------~~~v~~tD~~~~~l~~~~~n~~~-----n~~~~---------~---- 427 (564)
..-+|.-.||+|| .+++++.... .-+|+|||+|..+|+.|+.-+-. -+++. .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4669999999999 4444444433 24899999999999999842221 11110 0
Q ss_pred -------CCceEEEEeecCCCccchhhhhhcCCCccEEEEecee--eCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 008457 428 -------LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVS--YIPEAILPLFATAKELTASSNKSLREDQQPAFIL 498 (564)
Q Consensus 428 -------~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~--y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~ 498 (564)
...|.+..++...+. ...+.||+|+|-+|+ ++...-..+++.++..| +|+| .+++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~-------~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L-~~gG--------~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDS-------PFLGKFDLIFCRNVLIYFDEETQERILRRFADSL-KPGG--------LLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCc-------cccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHh-CCCC--------EEEE
Confidence 122445444443321 134689999999985 34667889999999999 9988 7777
Q ss_pred EEeecc
Q 008457 499 CHIFRQ 504 (564)
Q Consensus 499 ~~~~r~ 504 (564)
.+...-
T Consensus 240 G~sE~~ 245 (268)
T COG1352 240 GHSETI 245 (268)
T ss_pred ccCccc
Confidence 655543
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00099 Score=69.62 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=75.0
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
+|...+..+...+ .++.+|||++||.|+-+..+++.. ...|++.|+++.-++.+++|++.-++ .++.+...|
T Consensus 99 sS~l~~~~L~~~~--~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~----~nv~v~~~D 172 (470)
T PRK11933 99 SSMLPVAALFADD--NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV----SNVALTHFD 172 (470)
T ss_pred HHHHHHHHhccCC--CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEeCc
Confidence 4444455553332 478899999999999998888754 35899999999999999999998776 344444333
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeC--------------C--C-------ChHHHHHHHHHHhhccCC
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYI--------------P--E-------AILPLFATAKELTASSNK 486 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--------------~--~-------~~~~l~~~~~~ll~~~~g 486 (564)
-.. +....+..||.|+ .|+.-. . + .-..+++...++| +|+|
T Consensus 173 ~~~------~~~~~~~~fD~IL-vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L-kpGG 236 (470)
T PRK11933 173 GRV------FGAALPETFDAIL-LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL-KPGG 236 (470)
T ss_pred hhh------hhhhchhhcCeEE-EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc-CCCc
Confidence 111 1112245799998 222211 1 0 1256777788889 9987
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0014 Score=64.93 Aligned_cols=129 Identities=20% Similarity=0.233 Sum_probs=94.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.+|.+|||.=+|.|.++..++.... ..|+++|++|.+++.++++...+. ..+..+++|...... .-+.+|.|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~----~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP----ELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh----ccccCCEEE
Confidence 5699999999999999999999842 239999999999999998875443 447888999864321 127899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
.+..- ....++..+.+.+++||++-+.+....+... ......+.....+.
T Consensus 262 m~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~------------------------~~~~~~i~~~~~~~ 311 (341)
T COG2520 262 MGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDDIE------------------------ERPEKRIKSAARKG 311 (341)
T ss_pred eCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhhcc------------------------cchHHHHHHHHhhc
Confidence 96642 2345788888889999999887766533210 01356777777787
Q ss_pred CCcEEE
Q 008457 232 GFDVEE 237 (564)
Q Consensus 232 Gf~~~~ 237 (564)
|++...
T Consensus 312 ~~~~~v 317 (341)
T COG2520 312 GYKVEV 317 (341)
T ss_pred cCcceE
Confidence 765443
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0032 Score=58.28 Aligned_cols=145 Identities=22% Similarity=0.229 Sum_probs=91.4
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHH-HHHHHHHHhcCCCCCCCceEEEE
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIAL-DLLAQNVTANLKPPFLAKLITKR 435 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l-~~~~~n~~~n~~~~~~~~i~~~~ 435 (564)
+-.++..|...+....-..+++.|||+|+.||++.-.++..++++|+++|..-.-+ .-+|.+ .++.+.
T Consensus 60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------~rV~~~- 128 (245)
T COG1189 60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------PRVIVL- 128 (245)
T ss_pred cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------CcEEEE-
Confidence 34568888888888777789999999999999999999999999999999854222 222222 222222
Q ss_pred eecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------
Q 008457 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF------------- 502 (564)
Q Consensus 436 l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~------------- 502 (564)
.=.+...+.. +.-.+..|+|+ +|+=|- ++..++..+..++ ++++ .++.-..+
T Consensus 129 -E~tN~r~l~~--~~~~~~~d~~v-~DvSFI--SL~~iLp~l~~l~-~~~~--------~~v~LvKPQFEagr~~v~kkG 193 (245)
T COG1189 129 -ERTNVRYLTP--EDFTEKPDLIV-IDVSFI--SLKLILPALLLLL-KDGG--------DLVLLVKPQFEAGREQVGKKG 193 (245)
T ss_pred -ecCChhhCCH--HHcccCCCeEE-EEeehh--hHHHHHHHHHHhc-CCCc--------eEEEEecchhhhhhhhcCcCc
Confidence 1111110100 11123678776 566554 4777788888888 7765 22222222
Q ss_pred --ccC-----ChhHHHHHHHHcCCeEEEEcCC
Q 008457 503 --RQV-----DEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 503 --r~~-----~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
|.. ....+.+.+.+.||.+..+...
T Consensus 194 vv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 194 VVRDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred eecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 111 1135667777889999998744
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0013 Score=59.93 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=96.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCC--EEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD--LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~--~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
.|++.|.+...++.-+.++.+|+||||-.|+-+-.++...+. .|+++|+.|-- . ...+.+...
T Consensus 28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~----~~~V~~iq~ 92 (205)
T COG0293 28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P----IPGVIFLQG 92 (205)
T ss_pred hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c----CCCceEEee
Confidence 466777777777754556789999999999888877776543 59999997611 0 134777888
Q ss_pred ecCCCccchhhhhh-cCCCccEEEEeceeeC------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 437 EWGNRDHIEAIKEE-NNEGFEVILGTDVSYI------------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 437 ~w~~~~~~~~~~~~-~~~~fD~Ii~~d~~y~------------~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
|....+..+.+... ....+|+|+ +|.--+ .......+......| +++| .|++- ..+
T Consensus 93 d~~~~~~~~~l~~~l~~~~~DvV~-sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL-~~~G--------~fv~K-~fq 161 (205)
T COG0293 93 DITDEDTLEKLLEALGGAPVDVVL-SDMAPNTSGNRSVDHARSMYLCELALEFALEVL-KPGG--------SFVAK-VFQ 161 (205)
T ss_pred eccCccHHHHHHHHcCCCCcceEE-ecCCCCcCCCccccHHHHHHHHHHHHHHHHHee-CCCC--------eEEEE-EEe
Confidence 88877766666553 344569887 454332 123344455666678 8877 55443 455
Q ss_pred cCChhHHHHHHHHcCCeEEEEcCCCCCCC
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWPSKNSAS 532 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 532 (564)
....+.++..++ ..|+.+++....++..
T Consensus 162 g~~~~~~l~~~~-~~F~~v~~~KP~aSR~ 189 (205)
T COG0293 162 GEDFEDLLKALR-RLFRKVKIFKPKASRK 189 (205)
T ss_pred CCCHHHHHHHHH-HhhceeEEecCccccC
Confidence 555556777664 4688777775544443
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0016 Score=65.95 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=83.1
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCC--CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCC-
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYP--DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISP- 144 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~--~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~- 144 (564)
..+.+.++.+|||+.++.|.=|.++++... +..|+++|.++.-++..+.+....+ .++.....|..... ...+.
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~--~~~~~~ 227 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA--ELLPGG 227 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccc--cccccc
Confidence 456778999999999999999999998854 4667999999999999888876555 34566666654221 11122
Q ss_pred CceeEEEE------ccccc-------CCChh-------HHHHHHHHHHhccCCCeEEEEEe
Q 008457 145 SSIDIVTM------VFVLS-------AVSPE-------KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 145 ~~fD~V~~------~~vl~-------~~~~~-------~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++||.|++ ..++. ..+.. -+..+|....++|||||.|+.++
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 35999998 22331 11111 25678999999999999999864
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00052 Score=60.03 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=47.2
Q ss_pred eEEEeCCcccHHHHHHHhcCCC-EEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 379 KVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
.|||+|||+|..+..++..+.. +|+++|.+|.+.+.+++|+..|+.. ++.+....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~----~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP----NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC----cEEEEEeeeeC
Confidence 4899999999887777766544 8999999999999999999998763 36666666554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0015 Score=62.54 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=84.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+.++||=||-|.|+....++... ..+|+++|+++.+++.+++-+..........++++..-| ...-++.....+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D-----g~~~l~~~~~~~ 150 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD-----GRKFLKETQEEK 150 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST-----HHHHHHTSSST-
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh-----hHHHHHhccCCc
Confidence 67899999999998877777654 579999999999999999876654332223456654322 222222222228
Q ss_pred ccEEEEeceeeCC-----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh---HHHHHHHHcCCeEEEEcC
Q 008457 455 FEVILGTDVSYIP-----EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 455 fD~Ii~~d~~y~~-----~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~g~~~~~~~~ 526 (564)
||+|+. |+.-.. -.-..+++.+++.| +++| ++++-......... .....+++... ....+.
T Consensus 151 yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L-~~~G--------v~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~ 219 (246)
T PF01564_consen 151 YDVIIV-DLTDPDGPAPNLFTREFYQLCKRRL-KPDG--------VLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPYT 219 (246)
T ss_dssp EEEEEE-ESSSTTSCGGGGSSHHHHHHHHHHE-EEEE--------EEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred ccEEEE-eCCCCCCCcccccCHHHHHHHHhhc-CCCc--------EEEEEccCcccchHHHHHHHHHHHHhCC-ceEEEE
Confidence 999984 433211 12468899999999 9988 66665544443432 33455555555 444443
Q ss_pred CCCCC
Q 008457 527 SKNSA 531 (564)
Q Consensus 527 ~~~~~ 531 (564)
...|.
T Consensus 220 ~~vP~ 224 (246)
T PF01564_consen 220 AYVPS 224 (246)
T ss_dssp EECTT
T ss_pred EEcCe
Confidence 43444
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00044 Score=63.98 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=59.3
Q ss_pred CCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcC-----
Q 008457 350 CRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANL----- 423 (564)
Q Consensus 350 ~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~----- 423 (564)
....|-..+..- ++.+ +...+.++...+|||||.|-+...++. .++.+++++++.+...+.++.+.....
T Consensus 20 ~~~YGEi~~~~~---~~il-~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~ 95 (205)
T PF08123_consen 20 SETYGEISPEFV---SKIL-DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKH 95 (205)
T ss_dssp CCCGGGCHHHHH---HHHH-HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeecCHHHH---HHHH-HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHH
Confidence 345665555433 3333 223456788999999999966655554 356789999999988777765443211
Q ss_pred CCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHH
Q 008457 424 KPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPL 473 (564)
Q Consensus 424 ~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l 473 (564)
......++.....|..+.+..... -...|+|+++...|+++....|
T Consensus 96 ~g~~~~~v~l~~gdfl~~~~~~~~----~s~AdvVf~Nn~~F~~~l~~~L 141 (205)
T PF08123_consen 96 YGKRPGKVELIHGDFLDPDFVKDI----WSDADVVFVNNTCFDPDLNLAL 141 (205)
T ss_dssp CTB---EEEEECS-TTTHHHHHHH----GHC-SEEEE--TTT-HHHHHHH
T ss_pred hhcccccceeeccCccccHhHhhh----hcCCCEEEEeccccCHHHHHHH
Confidence 111124555555554433211111 1257999999998876544444
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00063 Score=60.76 Aligned_cols=75 Identities=8% Similarity=-0.115 Sum_probs=55.0
Q ss_pred EEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhh
Q 008457 403 VATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTA 482 (564)
Q Consensus 403 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~ 482 (564)
+++|+|++|++.++++........ ..++.+..-|-.+. ++.+++||+|+++.++.+..+...+++.+.++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~-~~~i~~~~~d~~~l-------p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvL- 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSC-YKCIEWIEGDAIDL-------PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVL- 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccC-CCceEEEEechhhC-------CCCCCCeeEEEecchhhcCCCHHHHHHHHHHHc-
Confidence 479999999999987665322110 12455544433221 345678999999998988889999999999999
Q ss_pred ccCC
Q 008457 483 SSNK 486 (564)
Q Consensus 483 ~~~g 486 (564)
+|+|
T Consensus 72 kpGG 75 (160)
T PLN02232 72 KPGS 75 (160)
T ss_pred CcCe
Confidence 9988
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00075 Score=72.61 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCccccHHHHHHhCC--------CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccC-CCCC
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYP--------DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSR-QISP 144 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~--------~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~-~~~~ 144 (564)
...+|||.|||+|.++..++.+.+ ..+++|+|+++.++..++....... ..+.+...|........ .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999988887642 2578999999999999987754332 23344444433211100 0013
Q ss_pred CceeEEEEcc
Q 008457 145 SSIDIVTMVF 154 (564)
Q Consensus 145 ~~fD~V~~~~ 154 (564)
+.||+|++|=
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 5799999953
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00051 Score=59.89 Aligned_cols=82 Identities=20% Similarity=0.219 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHh----CCCcEEEEEeCChHHHHHHHhcccccC----CCeeEEEecCCcccccCCCCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA----YPDVFVYACDFSPRAVNLVMTHKDFTE----TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~~iD~s~~~l~~a~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+..+|+|+|||.|.++..|+.. .++.+|+++|.++..++.+..+..... .++.+...++.... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-----SSD 98 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-----ccC
Confidence 67899999999999999999881 268999999999999988887654322 34555555443211 245
Q ss_pred ceeEEEEcccccCCC
Q 008457 146 SIDIVTMVFVLSAVS 160 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~ 160 (564)
..++++.-+.-.-++
T Consensus 99 ~~~~~vgLHaCG~Ls 113 (141)
T PF13679_consen 99 PPDILVGLHACGDLS 113 (141)
T ss_pred CCeEEEEeecccchH
Confidence 667777765555443
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00069 Score=60.96 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=64.5
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc-C--CCEEEEEcCChhHHHHHHHHHHhcCCC------CCCCceEEEEeecCCCccc
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG-S--ADLVVATDGDSIALDLLAQNVTANLKP------PFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~-~--~~~v~~tD~~~~~l~~~~~n~~~n~~~------~~~~~i~~~~l~w~~~~~~ 444 (564)
+.+|.+.||+|+|+|.|+..++.. + +..++++|.-+++++..++|+...--. ...+.+.+..-|-...
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g--- 156 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG--- 156 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc---
Confidence 568999999999999888877743 2 234599999999999999999875421 1123344443332211
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.-...+||.|-.. ...+.+-+.+-.-| +++|
T Consensus 157 ----~~e~a~YDaIhvG------Aaa~~~pq~l~dqL-~~gG 187 (237)
T KOG1661|consen 157 ----YAEQAPYDAIHVG------AAASELPQELLDQL-KPGG 187 (237)
T ss_pred ----CCccCCcceEEEc------cCccccHHHHHHhh-ccCC
Confidence 0123578877643 44555556666667 7766
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0035 Score=63.32 Aligned_cols=167 Identities=17% Similarity=0.244 Sum_probs=91.0
Q ss_pred CCCeEEEEcCCccccHHHHHH--------h-------CCCcEEEEEeCChHHHHHHHhcccc--------------cCCC
Q 008457 75 GRKDVLEVGCGAGNTIFPLIA--------A-------YPDVFVYACDFSPRAVNLVMTHKDF--------------TETR 125 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~--------~-------~~~~~v~~iD~s~~~l~~a~~~~~~--------------~~~~ 125 (564)
...+|+|+|||+|.++..+.. + -|..+|..-|+-..--...-+.... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 467999999999988765532 1 1357788888644322111111110 0011
Q ss_pred eeEEEecCCcccccCCCCCCceeEEEEcccccCCCh--h----------------------------------HHHHHHH
Q 008457 126 VSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSP--E----------------------------------KMSLVLQ 169 (564)
Q Consensus 126 i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~--~----------------------------------~~~~~l~ 169 (564)
.+...-+...-...=||.++.+++++..++||++. + |...+|+
T Consensus 143 -~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~ 221 (386)
T PLN02668 143 -SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLR 221 (386)
T ss_pred -ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 12222222221222468999999999999999961 1 2334445
Q ss_pred HHHhccCCCeEEEEEecCCCchhhh------h-----hcc-cccccccceee----cCCCceeeccCHHHHHHHHHhCC-
Q 008457 170 NIKKVLKPTGYVLFRDYAIGDLAQE------R-----LTG-KDQKISENFYV----RGDGTRAFYFSNDFLTSLFKENG- 232 (564)
Q Consensus 170 ~~~r~LkpgG~lii~~~~~~~~~~~------~-----~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~aG- 232 (564)
.=.+-|.|||.+++...+..+.... . +.. +..-..++... ..-....|..+.+++++.+++.|
T Consensus 222 ~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gs 301 (386)
T PLN02668 222 ARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGS 301 (386)
T ss_pred HHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCC
Confidence 5567889999999987665321000 0 000 00000000000 01112344669999999999887
Q ss_pred CcEEEeeeee
Q 008457 233 FDVEELGLCC 242 (564)
Q Consensus 233 f~~~~~~~~~ 242 (564)
|.+.++....
T Consensus 302 F~I~~le~~~ 311 (386)
T PLN02668 302 FAIDKLEVFK 311 (386)
T ss_pred EEeeeeEEee
Confidence 6766665543
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00052 Score=67.07 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=68.8
Q ss_pred chhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC
Q 008457 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 61 ~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 140 (564)
..+..+..+.+...++..++|.-+|.|..+..+++..+.++|+|+|.++.+++.|+++......++.++++++....-..
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHL 85 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHH
Confidence 34556777777778889999999999999999999876689999999999999999877544456777777664321100
Q ss_pred -CCCCCceeEEEEcc
Q 008457 141 -QISPSSIDIVTMVF 154 (564)
Q Consensus 141 -~~~~~~fD~V~~~~ 154 (564)
.....++|.|+...
T Consensus 86 ~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 86 DELLVTKIDGILVDL 100 (305)
T ss_pred HhcCCCcccEEEEec
Confidence 11234566666644
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0038 Score=59.57 Aligned_cols=103 Identities=9% Similarity=0.041 Sum_probs=74.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC---CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~---~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..-+||||.||.|--..-++... ..+|.+.|+++..++..++-++.+++. +.+++...|-.+..... .+ .
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~---~i~~f~~~dAfd~~~l~---~l-~ 207 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE---DIARFEQGDAFDRDSLA---AL-D 207 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc---cceEEEecCCCCHhHhh---cc-C
Confidence 45599999999995554444432 369999999999999999999999985 44577766654433222 22 3
Q ss_pred CCccEEEEeceeeC---CCChHHHHHHHHHHhhccCC
Q 008457 453 EGFEVILGTDVSYI---PEAILPLFATAKELTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~---~~~~~~l~~~~~~ll~~~~g 486 (564)
..++++|.+-++-. ...+...+.-+..++ .|+|
T Consensus 208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al-~pgG 243 (311)
T PF12147_consen 208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARAL-EPGG 243 (311)
T ss_pred CCCCEEEEecchhhCCcHHHHHHHHHHHHHHh-CCCc
Confidence 37899998876543 344667788888888 8887
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0006 Score=66.55 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=47.0
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
...++..+||.+||.|+.+..++.... .+|+++|.++++++.+++++.. ..++.+..-+.
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f 77 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNF 77 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCH
Confidence 344678999999999999998888753 6899999999999999987643 14555554443
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00045 Score=60.43 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=47.6
Q ss_pred eEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCC
Q 008457 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLI 134 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~ 134 (564)
.+||||||.|.++..+++.++..+++++|+++.+.+.++++....+ .++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 4899999999999999999888899999999999999988765332 35777776664
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0062 Score=60.86 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=75.3
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCC----------------------------------------EE
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD----------------------------------------LV 402 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~----------------------------------------~v 402 (564)
.||.-|.....-..+..++|-=||+|.+.+.++..... .+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 34544444334446679999999999999888865421 37
Q ss_pred EEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCC---------ChHHH
Q 008457 403 VATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------AILPL 473 (564)
Q Consensus 403 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------~~~~l 473 (564)
++.|+++.+++.|+.|+...+.. +.|.+...|-.+.. + +...+|+||++ +.|... .+..+
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~---d~I~f~~~d~~~l~------~-~~~~~gvvI~N-PPYGeRlg~~~~v~~LY~~f 326 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVG---DLIEFKQADATDLK------E-PLEEYGVVISN-PPYGERLGSEALVAKLYREF 326 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCC---ceEEEEEcchhhCC------C-CCCcCCEEEeC-CCcchhcCChhhHHHHHHHH
Confidence 79999999999999999999885 56777766554321 1 11589998854 566532 44556
Q ss_pred HHHHHHHh
Q 008457 474 FATAKELT 481 (564)
Q Consensus 474 ~~~~~~ll 481 (564)
.+++++.+
T Consensus 327 g~~lk~~~ 334 (381)
T COG0116 327 GRTLKRLL 334 (381)
T ss_pred HHHHHHHh
Confidence 66777777
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0007 Score=67.21 Aligned_cols=98 Identities=20% Similarity=0.157 Sum_probs=67.1
Q ss_pred eEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEE
Q 008457 379 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 458 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~I 458 (564)
.|||+|+|||+++.+++..++..|++++.=.-|.+++++-+..|+.+ ++|.+..-.= ..++-.+..+-|++
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S---dkI~vInkrS------tev~vg~~~RadI~ 139 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS---DKINVINKRS------TEVKVGGSSRADIA 139 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc---cceeeecccc------ceeeecCcchhhhh
Confidence 69999999998888888888889999998888999999999999986 4455442110 01111122357877
Q ss_pred EEeceee---CCCChHHHHHHHHHHhhccCC
Q 008457 459 LGTDVSY---IPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 459 i~~d~~y---~~~~~~~l~~~~~~ll~~~~g 486 (564)
+..+..- ....++.+-....+|+ +++-
T Consensus 140 v~e~fdtEligeGalps~qhAh~~L~-~~nc 169 (636)
T KOG1501|consen 140 VREDFDTELIGEGALPSLQHAHDMLL-VDNC 169 (636)
T ss_pred hHhhhhhhhhccccchhHHHHHHHhc-ccCC
Confidence 7654322 2335666666666677 6653
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=58.25 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEe-cCCcccc----cCCCCCCce
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVC-DLISDDL----SRQISPSSI 147 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~-d~~~~~~----~~~~~~~~f 147 (564)
.++.+|||+||..|.|+.-..++ .|...|.|+|+-+ +. ....+.++++ |+.+... ...+|+...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~-p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE-PPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc-CCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 68999999999999999887777 5889999999833 22 2334555555 7765432 224578899
Q ss_pred eEEEEcccccCC--C-------hhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 148 DIVTMVFVLSAV--S-------PEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 148 D~V~~~~vl~~~--~-------~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
|+|++-+.-... . .+--..++.-....++|+|.++...|...
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 999995432211 1 11122344444567789999999877643
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0013 Score=64.56 Aligned_cols=87 Identities=21% Similarity=0.262 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.++||+||++|.|+..|+++ +.+|++||..+ |..... ...+|.....|..... | +.+.+|+++|-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l~~~L~-----~~~~V~h~~~d~fr~~---p-~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-MAQSLM-----DTGQVEHLRADGFKFR---P-PRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-cCHhhh-----CCCCEEEEeccCcccC---C-CCCCCCEEEEe
Confidence 68999999999999999999998 77999999654 322221 2356777777764432 1 15789999996
Q ss_pred ccccCCChhHHHHHHHHHHhccCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPT 178 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~Lkpg 178 (564)
.+ +.+.++++-+.++|..|
T Consensus 278 mv------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 278 MV------EKPARVAELMAQWLVNG 296 (357)
T ss_pred cc------cCHHHHHHHHHHHHhcC
Confidence 65 34667777788888765
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00098 Score=67.65 Aligned_cols=101 Identities=10% Similarity=0.121 Sum_probs=77.3
Q ss_pred CCeEEEEcCCccccHHHHHHhCCC-cEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~-~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
+.+|||+.||+|..+..++.+.++ .+|+++|+++.+++.++++..... .++++.+.|+..... .....||+|..-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~---~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR---YRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH---HhCCCCCEEEeC
Confidence 468999999999999999987433 589999999999999998875443 357788888754311 123579999884
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
- + . .+..++..+.+.+++||.++++.
T Consensus 122 P-f-G----s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 P-F-G----TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-C-C----CcHHHHHHHHHhcccCCEEEEEe
Confidence 3 2 2 23468999999999999999973
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00049 Score=69.80 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=49.0
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLIS 135 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~ 135 (564)
+.+|||++||+|.++..|++.. .+|+|+|+++.+++.|+++....+ .+++++.+|+..
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 3579999999999999998874 489999999999999998875443 368999999854
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0004 Score=62.81 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
....|+|.-||.|..+..++.+ ++.|+++|++|.-+..|+.+.+-- +.+|.|+++|+.+.--.+.+....+|+|..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 5678999999999999999998 677999999999999999886532 368999999986532222233334555555
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0027 Score=58.78 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=81.9
Q ss_pred CCeEEEeCCcccHHHHHHHh--cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 377 GKKVLELGCGCGGICSMVAA--GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~--~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+.+++|+|+|.| ++++-++ ....+|+.+|-...=+..++.-...-++ .++.+..-.-. .+. ...+
T Consensus 68 ~~~~~DIGSGaG-fPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L----~nv~i~~~RaE------~~~--~~~~ 134 (215)
T COG0357 68 AKRVLDIGSGAG-FPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL----ENVEIVHGRAE------EFG--QEKK 134 (215)
T ss_pred CCEEEEeCCCCC-CchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC----CCeEEehhhHh------hcc--cccc
Confidence 689999999999 6655544 3345799999887666666655554444 23444322211 111 1113
Q ss_pred -ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh-hHHHHHHHHcCCeEEEEcCCCCCCC
Q 008457 455 -FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PSMLSAATQCGFRLVDKWPSKNSAS 532 (564)
Q Consensus 455 -fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~ 532 (564)
||+|.+-- ...+..++..+..++ +++| .++...-....++ ......+...|+.++.+.....|..
T Consensus 135 ~~D~vtsRA----va~L~~l~e~~~pll-k~~g--------~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~ 201 (215)
T COG0357 135 QYDVVTSRA----VASLNVLLELCLPLL-KVGG--------GFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPEL 201 (215)
T ss_pred cCcEEEeeh----ccchHHHHHHHHHhc-ccCC--------cchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCC
Confidence 99997544 456888999999999 8877 3322222222222 3566777788999999986655555
Q ss_pred C
Q 008457 533 P 533 (564)
Q Consensus 533 ~ 533 (564)
.
T Consensus 202 ~ 202 (215)
T COG0357 202 D 202 (215)
T ss_pred C
Confidence 3
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0035 Score=58.86 Aligned_cols=110 Identities=9% Similarity=0.014 Sum_probs=74.2
Q ss_pred CeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC-Cc
Q 008457 378 KKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE-GF 455 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~-~f 455 (564)
..+||||||.|......|...+ ..++++|+....+..+.+-+...++. ++.+...| ..+-+..+.+. +.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~----Nlri~~~D-----A~~~l~~~~~~~sl 120 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK----NLRLLCGD-----AVEVLDYLIPDGSL 120 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC----cEEEEcCC-----HHHHHHhcCCCCCe
Confidence 5899999999988777777654 58999999888888887777776652 45554332 12222223344 88
Q ss_pred cEEEEe-ceeeCCC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC
Q 008457 456 EVILGT-DVSYIPE-------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 505 (564)
Q Consensus 456 D~Ii~~-d~~y~~~-------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~ 505 (564)
|-|... .-.+... ..+.+++.+++.| +++| .+.+++-....
T Consensus 121 ~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~L-k~gG--------~l~~aTD~~~y 169 (227)
T COG0220 121 DKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKL-KPGG--------VLHFATDNEEY 169 (227)
T ss_pred eEEEEECCCCCCCccccccccCCHHHHHHHHHHc-cCCC--------EEEEEecCHHH
Confidence 877522 1122211 4689999999999 9988 88877555443
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0017 Score=60.81 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=67.2
Q ss_pred ccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceE
Q 008457 353 TGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 432 (564)
Q Consensus 353 ~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~ 432 (564)
.|.++-.-+.++...+ ....+-+...|||+|-|||.+.-.++.. +++|+|++++|.++..+++.+..-.. .++++
T Consensus 36 ~GQHilkNp~v~~~I~-~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~---~~kLq 110 (315)
T KOG0820|consen 36 FGQHILKNPLVIDQIV-EKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPK---SGKLQ 110 (315)
T ss_pred cchhhhcCHHHHHHHH-hccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCc---cceee
Confidence 3444443344444443 3345568889999999999888777765 56899999999999999987754332 36777
Q ss_pred EEEeecCCCccchhhhhhcCCCccEEEEeceeeCC
Q 008457 433 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP 467 (564)
Q Consensus 433 ~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~ 467 (564)
+..-|.-+.+ ...||++|+ .+.|..
T Consensus 111 V~~gD~lK~d---------~P~fd~cVs-NlPyqI 135 (315)
T KOG0820|consen 111 VLHGDFLKTD---------LPRFDGCVS-NLPYQI 135 (315)
T ss_pred EEecccccCC---------Ccccceeec-cCCccc
Confidence 7776665442 237888774 344443
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0031 Score=57.71 Aligned_cols=140 Identities=16% Similarity=0.089 Sum_probs=88.0
Q ss_pred hhHHHHHHHHhcCCCCC----CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEE
Q 008457 359 ESAHLMAAVLARNPTIV----AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK 434 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~----~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~ 434 (564)
+++..|.+||....... ...++||+||=+.-.... ....-.|+.+|+++.- -.+.
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~-------------------~~I~ 88 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQH-------------------PGIL 88 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCCC-------------------CCce
Confidence 57888999998743222 235999999974311111 1122369999997510 0112
Q ss_pred EeecCCCccchhhhhhcCCCccEEEEeceeeCC---CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee------ccC
Q 008457 435 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---EAILPLFATAKELTASSNKSLREDQQPAFILCHIF------RQV 505 (564)
Q Consensus 435 ~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~------r~~ 505 (564)
.-|+-+-... ....++||+|..+=|+-.. ..--.+++.+.++| +++|. ..-|.+++..+. |..
T Consensus 89 qqDFm~rplp----~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL-~~~g~---~~~~~LFlVlP~~Cv~NSRy~ 160 (219)
T PF11968_consen 89 QQDFMERPLP----KNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFL-KPPGL---SLFPSLFLVLPLPCVTNSRYM 160 (219)
T ss_pred eeccccCCCC----CCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHh-CCCCc---cCcceEEEEeCchHhhccccc
Confidence 2233222111 1135699999999887653 45668999999999 98871 112346665554 455
Q ss_pred ChhHHHHHHHHcCCeEEEEcCC
Q 008457 506 DEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 506 ~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
+...|.+.+...||...+....
T Consensus 161 ~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 161 TEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred CHHHHHHHHHhCCcEEEEEEec
Confidence 6678899999999999987543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0024 Score=59.16 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=75.0
Q ss_pred EEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC-ccE
Q 008457 380 VLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG-FEV 457 (564)
Q Consensus 380 vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~-fD~ 457 (564)
|.|+||--|.++..++..+. .+|+++|+++.-++.+++|+..+++. +++.++.-| -++ .+.++. .|+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~---~~i~~rlgd-----GL~---~l~~~e~~d~ 69 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE---DRIEVRLGD-----GLE---VLKPGEDVDT 69 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T---TTEEEEE-S-----GGG---G--GGG---E
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc---ccEEEEECC-----ccc---ccCCCCCCCE
Confidence 68999999999999998875 48999999999999999999998875 567766443 122 233333 788
Q ss_pred EEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEE
Q 008457 458 ILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 458 Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
|+.|-+--. ....++......+ +. ...++++-.. ....+..++.+.||.+.+-
T Consensus 70 ivIAGMGG~--lI~~ILe~~~~~~-~~--------~~~lILqP~~---~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 70 IVIAGMGGE--LIIEILEAGPEKL-SS--------AKRLILQPNT---HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp EEEEEE-HH--HHHHHHHHTGGGG-TT----------EEEEEESS----HHHHHHHHHHTTEEEEEE
T ss_pred EEEecCCHH--HHHHHHHhhHHHh-cc--------CCeEEEeCCC---ChHHHHHHHHHCCCEEEEe
Confidence 887654321 2223333332222 11 2367776332 2345788888999998764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=59.06 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=82.7
Q ss_pred ceechhHH--HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceE
Q 008457 355 LMLWESAH--LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 432 (564)
Q Consensus 355 ~~~W~~~~--~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~ 432 (564)
+.-|+.-+ .+|+-+. .+|.+||++|=|.|.+...+-.....+-+.++.+|++++.++.+.-.. .+++.
T Consensus 83 Mm~WEtpiMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-----k~nVi 152 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-----KENVI 152 (271)
T ss_pred hhhhhhHHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-----ccceE
Confidence 56676654 3444443 488999999999995555555556677788999999999888874332 35677
Q ss_pred EEEeecCCCccchhhhhhcCCCccEEEEecee-eCCCChHHHHHHHHHHhhccCC
Q 008457 433 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVS-YIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 433 ~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~-y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+..-.|.+. + ..++++.||-|. -|+. -.-+++-.+.+.+-+|| ||+|
T Consensus 153 il~g~WeDv--l---~~L~d~~FDGI~-yDTy~e~yEdl~~~hqh~~rLL-kP~g 200 (271)
T KOG1709|consen 153 ILEGRWEDV--L---NTLPDKHFDGIY-YDTYSELYEDLRHFHQHVVRLL-KPEG 200 (271)
T ss_pred EEecchHhh--h---ccccccCcceeE-eechhhHHHHHHHHHHHHhhhc-CCCc
Confidence 778889753 2 246778899876 4544 34456777888999999 9988
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00073 Score=64.39 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=84.2
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCC-------------CCCC-----------
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLK-------------PPFL----------- 428 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~-------------~~~~----------- 428 (564)
...+|.++||+|||.-....+.+.....+|+++|+.+.-++.+++=+...+. ....
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3447889999999997555555556778999999999888777654433211 0000
Q ss_pred CceE-EEEeecCCCccchhhhhhcCCCccEEEEeceee----CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 429 AKLI-TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY----IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 429 ~~i~-~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y----~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
..|+ +..-|..+...+..... .+.+||+|+++=|+- +.+.+...++.+.++| |||| .++++...+
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~-~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lL-kpGG--------~Lil~~~l~ 202 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVV-LPPKFDCVISSFCLESACKDLDEYRRALRNISSLL-KPGG--------HLILAGVLG 202 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-S-S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTE-EEEE--------EEEEEEESS
T ss_pred HhhceEEEeeccCCCCCCcccc-CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHc-CCCc--------EEEEEEEcC
Confidence 1122 22233333322211000 123699999886664 3456777888888899 9988 555544431
Q ss_pred --------------cCChhHHHHHHHHcCCeEEEEc
Q 008457 504 --------------QVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 504 --------------~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
..++....+.+.++||.+++.-
T Consensus 203 ~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 203 STYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp -SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 2234456788899999998876
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.011 Score=58.28 Aligned_cols=84 Identities=14% Similarity=0.264 Sum_probs=55.3
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE---eecCCCccchhhhhh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR---LEWGNRDHIEAIKEE 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~---l~w~~~~~~~~~~~~ 450 (564)
+.+|.++|||||++|+.+..++..+. +|+++|..+ +- .++..+ ++|.... +.|..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~~------~~V~h~~~d~fr~~p---------- 266 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMDT------GQVEHLRADGFKFRP---------- 266 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhCC------CCEEEEeccCcccCC----------
Confidence 46899999999999999998888776 899999754 22 222221 2333332 22211
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhcc
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASS 484 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~ 484 (564)
..+.+|+|+ +|++-.+. .+.+.+..+| ..
T Consensus 267 ~~~~vDwvV-cDmve~P~---rva~lm~~Wl-~~ 295 (357)
T PRK11760 267 PRKNVDWLV-CDMVEKPA---RVAELMAQWL-VN 295 (357)
T ss_pred CCCCCCEEE-EecccCHH---HHHHHHHHHH-hc
Confidence 146899876 78886544 5667777788 44
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0026 Score=68.50 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=39.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC---------CCEEEEEcCChhHHHHHHHHHHhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS---------ADLVVATDGDSIALDLLAQNVTANL 423 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~---------~~~v~~tD~~~~~l~~~~~n~~~n~ 423 (564)
...+|||.|||+|++...++... ...+++.|+++.++..++.|+...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 45699999999998887766432 1479999999999999999987654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.011 Score=57.59 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=68.0
Q ss_pred CeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 378 KKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
++||-||-|.|+....++... ..+++++|+++.+++.+++-+..-.......++++..-| ..+-+.. ...+||
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D-----g~~~v~~-~~~~fD 151 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD-----GVEFLRD-CEEKFD 151 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc-----HHHHHHh-CCCcCC
Confidence 699999999998888888765 579999999999999999866543211112444444221 2222222 233899
Q ss_pred EEEEeceeeCCCC------hHHHHHHHHHHhhccCC
Q 008457 457 VILGTDVSYIPEA------ILPLFATAKELTASSNK 486 (564)
Q Consensus 457 ~Ii~~d~~y~~~~------~~~l~~~~~~ll~~~~g 486 (564)
+|| .|+.-. .. -..+.+.++++| +++|
T Consensus 152 vIi-~D~tdp-~gp~~~Lft~eFy~~~~~~L-~~~G 184 (282)
T COG0421 152 VII-VDSTDP-VGPAEALFTEEFYEGCRRAL-KEDG 184 (282)
T ss_pred EEE-EcCCCC-CCcccccCCHHHHHHHHHhc-CCCc
Confidence 998 343222 22 378899999999 9988
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.035 Score=54.66 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHh
Q 008457 362 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTA 421 (564)
Q Consensus 362 ~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~ 421 (564)
..|.+.+..... .+|..|||--||+| -.+.+|.+...+.+++|++++.++.+++.+..
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSG-TT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSF-TTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCc-HHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 344555444322 38899999999999 77777777888999999999999999988754
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0018 Score=60.85 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=66.7
Q ss_pred CCCC--eEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCC-----CceEEEEeecCCCccchhh
Q 008457 375 VAGK--KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFL-----AKLITKRLEWGNRDHIEAI 447 (564)
Q Consensus 375 ~~~~--~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~-----~~i~~~~l~w~~~~~~~~~ 447 (564)
.++. +|||+-||+|..+..++..++. |+++|.++.+..+++.|+......... .++.+.. .+..+.+
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~-----~da~~~L 158 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH-----ASSLTAL 158 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe-----CcHHHHH
Confidence 3445 8999999999998888888765 999999999999999999874211100 2233322 2233333
Q ss_pred hhhcCCCccEEEEeceeeCCCChHHHHHHHHHHh
Q 008457 448 KEENNEGFEVILGTDVSYIPEAILPLFATAKELT 481 (564)
Q Consensus 448 ~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll 481 (564)
... ...||+|. .|..|-......+.+.=-+++
T Consensus 159 ~~~-~~~fDVVY-lDPMfp~~~ksa~vkk~mr~~ 190 (250)
T PRK10742 159 TDI-TPRPQVVY-LDPMFPHKQKSALVKKEMRVF 190 (250)
T ss_pred hhC-CCCCcEEE-ECCCCCCCccccchhhhHHHH
Confidence 332 34799876 899998776666544444444
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0023 Score=60.84 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=60.4
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+.+.......++.+|||||+|.|.++..++..+ ++|+++++|+.+++.+++.... .+++.+..-|--+.+.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d~- 90 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFDF- 90 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCcc-
Confidence 4444454555568899999999999998888765 4699999999999999887651 1445555444332211
Q ss_pred hhhhhhcCCCccEEEEeceeeCCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPE 468 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~ 468 (564)
.. +. .++.|+ +.+.|+..
T Consensus 91 ~~---l~--~~~~vV-aNlPY~Is 108 (259)
T COG0030 91 PS---LA--QPYKVV-ANLPYNIS 108 (259)
T ss_pred hh---hc--CCCEEE-EcCCCccc
Confidence 10 00 567776 55677755
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.015 Score=53.52 Aligned_cols=155 Identities=20% Similarity=0.267 Sum_probs=92.2
Q ss_pred CccceechhHH-HHHHHHhcC---CCCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhcCCC
Q 008457 352 STGLMLWESAH-LMAAVLARN---PTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKP 425 (564)
Q Consensus 352 ~~G~~~W~~~~-~l~~~l~~~---~~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n~~~ 425 (564)
..+.++|+.-+ .||..++.. ..+.+|.+||=||+++|...+.++-. + ...|.+++.++...+-+-. +....
T Consensus 45 ~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~-la~~R-- 121 (229)
T PF01269_consen 45 KVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLN-LAKKR-- 121 (229)
T ss_dssp -EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH-HHHHS--
T ss_pred ccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHH-HhccC--
Confidence 34678896643 566666543 45668999999999999777777764 3 4589999999966543332 22111
Q ss_pred CCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC
Q 008457 426 PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 505 (564)
Q Consensus 426 ~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~ 505 (564)
.+|-..- ++.........+. +.+|+|+ +|+- .+....-++......| +++| .++++.+.|..
T Consensus 122 ---~NIiPIl---~DAr~P~~Y~~lv-~~VDvI~-~DVa-Qp~Qa~I~~~Na~~fL-k~gG--------~~~i~iKa~si 183 (229)
T PF01269_consen 122 ---PNIIPIL---EDARHPEKYRMLV-EMVDVIF-QDVA-QPDQARIAALNARHFL-KPGG--------HLIISIKARSI 183 (229)
T ss_dssp ---TTEEEEE---S-TTSGGGGTTTS---EEEEE-EE-S-STTHHHHHHHHHHHHE-EEEE--------EEEEEEEHHHH
T ss_pred ---Cceeeee---ccCCChHHhhccc-ccccEEE-ecCC-ChHHHHHHHHHHHhhc-cCCc--------EEEEEEecCcc
Confidence 1222111 1111222222222 3677655 5654 5678888999999999 9988 88888888754
Q ss_pred Ch-----hHH---HHHHHHcCCeEEEEcCC
Q 008457 506 DE-----PSM---LSAATQCGFRLVDKWPS 527 (564)
Q Consensus 506 ~~-----~~~---~~~~~~~g~~~~~~~~~ 527 (564)
+. .-| .+.+++.||++.+....
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 32 123 46666779999887643
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0024 Score=62.64 Aligned_cols=114 Identities=19% Similarity=0.188 Sum_probs=82.8
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+.+.++.+|||+.++.|.=+.++++... ...+++.|+++.-+...+.+....+ .++.....|...... ......|
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~--~~~~~~f 157 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP--KKPESKF 157 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH--HHHTTTE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc--ccccccc
Confidence 45668999999999999999999998854 6799999999999998888765444 456666666654311 1123469
Q ss_pred eEEEE---cc---cccCCCh--------------hHHHHHHHHHHhcc----CCCeEEEEEe
Q 008457 148 DIVTM---VF---VLSAVSP--------------EKMSLVLQNIKKVL----KPTGYVLFRD 185 (564)
Q Consensus 148 D~V~~---~~---vl~~~~~--------------~~~~~~l~~~~r~L----kpgG~lii~~ 185 (564)
|.|++ +. ++..-+. .....+|+.+.+.+ ||||+++.++
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 99998 22 2222211 12457899999999 9999999864
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0029 Score=61.12 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=99.5
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc----cCCCeeEEEecCCcccccC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF----TETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~----~~~~i~~~~~d~~~~~~~~ 140 (564)
..+.+.+. .....|+.+|||-=.-...+.. .++.+++=+|. |+.++.-++.... ...+..++.+|+. .++..
T Consensus 72 ~~i~~~~~-~g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~ 147 (260)
T TIGR00027 72 DFLLAAVA-AGIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPA 147 (260)
T ss_pred HHHHHHHh-cCCcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHH
Confidence 33334443 2345799999987655544422 12566777776 4555544444332 3467788888886 33322
Q ss_pred -----CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh-hhcccccccccceeecCCCc
Q 008457 141 -----QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE-RLTGKDQKISENFYVRGDGT 214 (564)
Q Consensus 141 -----~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 214 (564)
++..+.--++++-.++.+++++....+|+.+.+...||+.+++.....-..... ........... ......
T Consensus 148 ~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 224 (260)
T TIGR00027 148 ALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAAR---GVDGSG 224 (260)
T ss_pred HHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhh---cccccc
Confidence 233334457888889999999999999999999988999988865443111000 00000000000 001112
Q ss_pred eeeccCHHHHHHHHHhCCCcEEEe
Q 008457 215 RAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 215 ~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
..+.++++++..+|.+.||.....
T Consensus 225 ~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 225 LVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred cccCCChhhHHHHHHHCCCeeecC
Confidence 233568999999999999998654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.003 Score=59.27 Aligned_cols=93 Identities=22% Similarity=0.352 Sum_probs=67.0
Q ss_pred hhHHHHhhhccC-CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC
Q 008457 62 YLDKEWGRYFSG-AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 62 ~~~~~~~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 140 (564)
.+...+.+.+.. .++.+|+|||||.--++.......++..++|+|++..+++.........+.+.++...|+...
T Consensus 91 ~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~---- 166 (251)
T PF07091_consen 91 NLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD---- 166 (251)
T ss_dssp GHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS----
T ss_pred hHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc----
Confidence 344444444443 458999999999999888877777788999999999999999887766667788888888653
Q ss_pred CCCCCceeEEEEcccccCC
Q 008457 141 QISPSSIDIVTMVFVLSAV 159 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~ 159 (564)
.+....|+.+..=+++.+
T Consensus 167 -~~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 167 -PPKEPADLALLLKTLPCL 184 (251)
T ss_dssp -HTTSEESEEEEET-HHHH
T ss_pred -CCCCCcchhhHHHHHHHH
Confidence 256789999998888877
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.009 Score=58.33 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=73.0
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
.+...+|||+|||+| .+..++.. ...+++++|.|+.++++++.=+.. .... . ...|... .... ..
T Consensus 31 ~f~P~~vLD~GsGpG-ta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~-~~~~--~-----~~~~~~~-~~~~--~~ 98 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPG-TALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA-GPNN--R-----NAEWRRV-LYRD--FL 98 (274)
T ss_pred CCCCceEEEecCChH-HHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc-cccc--c-----cchhhhh-hhcc--cc
Confidence 467889999999998 55555542 245899999999999988874332 2211 0 0112111 0000 01
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEEEEc
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~~ 525 (564)
.....|+|+++-++-.-.. ....+.+..+..+. .+.+++.-+-...+- ....+.+.+.|+.+.--.
T Consensus 99 ~~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~--------~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~APC 167 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPS-AARAELVRSLWNKT--------APVLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAPC 167 (274)
T ss_pred cCCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhc--------cCcEEEEcCCChHHHHHHHHHHHHHhhCCCceECCC
Confidence 1223499999988877555 55555555554111 124444433322221 234455566777776544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.01 Score=55.72 Aligned_cols=138 Identities=11% Similarity=0.066 Sum_probs=86.5
Q ss_pred HhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccch
Q 008457 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE 445 (564)
Q Consensus 368 l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~ 445 (564)
+....+..+|.+|||-|+|+|.++-+++..- ..+++-.|....-.+.+++-....+.. +.+.+..-|.......
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~---~~vt~~hrDVc~~GF~- 172 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG---DNVTVTHRDVCGSGFL- 172 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC---cceEEEEeecccCCcc-
Confidence 3334466789999999999998886666542 358999999887777777777777764 5677777766543211
Q ss_pred hhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 446 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 446 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.....+|.|. -|+.--++ .+-.+...| +.+| .-++++..--+-.+.-.++++++||--++..
T Consensus 173 ----~ks~~aDaVF-LDlPaPw~----AiPha~~~l-k~~g--------~r~csFSPCIEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 173 ----IKSLKADAVF-LDLPAPWE----AIPHAAKIL-KDEG--------GRLCSFSPCIEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred ----ccccccceEE-EcCCChhh----hhhhhHHHh-hhcC--------ceEEeccHHHHHHHHHHHHHHhCCCceEEEE
Confidence 1134566553 34433333 334444478 7666 3444444432223456788888888766665
Q ss_pred CC
Q 008457 526 PS 527 (564)
Q Consensus 526 ~~ 527 (564)
++
T Consensus 235 Ev 236 (314)
T KOG2915|consen 235 EV 236 (314)
T ss_pred Ee
Confidence 54
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0016 Score=66.06 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=47.3
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDL 133 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~ 133 (564)
.+.+...++ +|||+-||.|.++..|+.. ..+|+|+|.++.+++.|+.+....+ .+++|+..++
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 344554444 8999999999999999988 5789999999999999998876544 6789988765
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00034 Score=57.68 Aligned_cols=99 Identities=25% Similarity=0.258 Sum_probs=43.7
Q ss_pred EEEcCCccccHHHHHHhCCC---cEEEEEeCChH---HHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 80 LEVGCGAGNTIFPLIAAYPD---VFVYACDFSPR---AVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 80 LDiGcG~G~~~~~l~~~~~~---~~v~~iD~s~~---~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
||||+..|..+..+++..+. .+++++|..+. ..+..++ .....+++++.++.... ++ .++.+++|+|+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~-l~-~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDF-LP-SLPDGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHH-HH-HHHH--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHH-HH-HcCCCCEEEEEEC
Confidence 68999999998888775322 37999999994 3333333 12235689999987432 11 2335789999995
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.. |. .+.....++.+.+.|+|||.+++-+
T Consensus 77 g~--H~-~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 77 GD--HS-YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp S------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--CC-HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 53 32 1467778999999999999998753
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.002 Score=65.94 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=64.9
Q ss_pred CeEEEeCCcccHHHHHHHhcCCCEE--EEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 378 KKVLELGCGCGGICSMVAAGSADLV--VATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~~~~v--~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
..+||+|||+|.+++.++.++.-.+ ..-|..+..++.+.+. +++...+.+. ..-.+++++.|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~~~------------s~rLPfp~~~f 182 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER----GVPAMIGVLG------------SQRLPFPSNAF 182 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc----Ccchhhhhhc------------cccccCCccch
Confidence 3799999999999998887764321 1223333334443322 2221111110 11126788899
Q ss_pred cEEEEeceeeCCCCh-HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 456 EVILGTDVSYIPEAI-LPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~-~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
|+|-++.|+-..... .-++-.+.|+| +|+| .++++.+.-.
T Consensus 183 DmvHcsrc~i~W~~~~g~~l~evdRvL-RpGG--------yfv~S~ppv~ 223 (506)
T PF03141_consen 183 DMVHCSRCLIPWHPNDGFLLFEVDRVL-RPGG--------YFVLSGPPVY 223 (506)
T ss_pred hhhhcccccccchhcccceeehhhhhh-ccCc--------eEEecCCccc
Confidence 999999988664332 45788999999 9998 8888887643
|
; GO: 0008168 methyltransferase activity |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0071 Score=54.29 Aligned_cols=108 Identities=20% Similarity=0.352 Sum_probs=77.3
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
++..++.+||=+|+.+|....+.+.-.+...++|+++|+......-..... ..|+--+..|+....-...+ -+..|+|
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-R~Ni~PIL~DA~~P~~Y~~~-Ve~VDvi 149 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-RPNIIPILEDARKPEKYRHL-VEKVDVI 149 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-CCCceeeecccCCcHHhhhh-cccccEE
Confidence 445899999999999999999999887678899999999765433322221 24566677887653322222 2458998
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+.--+ .++...-+..++...||+||.+++.
T Consensus 150 y~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 150 YQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 88322 2356777889999999999977774
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0095 Score=54.51 Aligned_cols=126 Identities=12% Similarity=0.183 Sum_probs=93.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC-CCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI-SPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~-~~~~fD~V 150 (564)
..+.++.||||--|++...|.+.++...+++.|+++..++.|.++..... .+++..++|... ++ ++..+|+|
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-----~l~~~d~~d~i 89 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-----VLELEDEIDVI 89 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-----ccCccCCcCEE
Confidence 34556999999999999999999888899999999999999998876543 567777777632 23 34478998
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
+...+=. ..+..+|.+-.+.|+.=-.+++. ++ -...++++++..
T Consensus 90 vIAGMGG----~lI~~ILee~~~~l~~~~rlILQ-Pn-------------------------------~~~~~LR~~L~~ 133 (226)
T COG2384 90 VIAGMGG----TLIREILEEGKEKLKGVERLILQ-PN-------------------------------IHTYELREWLSA 133 (226)
T ss_pred EEeCCcH----HHHHHHHHHhhhhhcCcceEEEC-CC-------------------------------CCHHHHHHHHHh
Confidence 8865422 35677788887777643344442 11 147889999999
Q ss_pred CCCcEEEeee
Q 008457 231 NGFDVEELGL 240 (564)
Q Consensus 231 aGf~~~~~~~ 240 (564)
.+|.+..-..
T Consensus 134 ~~~~I~~E~i 143 (226)
T COG2384 134 NSYEIKAETI 143 (226)
T ss_pred CCceeeeeee
Confidence 9999876444
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0069 Score=56.08 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=88.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++..+||||+.||.|+..+++.+ ..+|+++|..-..++.--+. .+.-+-+...++..... ..+ .+..|+++|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~---d~rV~~~E~tN~r~l~~-~~~-~~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRN---DPRVIVLERTNVRYLTP-EDF-TEKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhc---CCcEEEEecCChhhCCH-HHc-ccCCCeEEEE
Confidence 689999999999999999999884 45899999988665443222 11122334445432211 111 2367899996
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
-++. .+..+|..+..+++|+|.++...-. ..... ...+...=..... ..+---...+.+++++.||
T Consensus 152 vSFI-----SL~~iLp~l~~l~~~~~~~v~LvKP--QFEag-----r~~v~kkGvv~d~--~~~~~v~~~i~~~~~~~g~ 217 (245)
T COG1189 152 VSFI-----SLKLILPALLLLLKDGGDLVLLVKP--QFEAG-----REQVGKKGVVRDP--KLHAEVLSKIENFAKELGF 217 (245)
T ss_pred eehh-----hHHHHHHHHHHhcCCCceEEEEecc--hhhhh-----hhhcCcCceecCc--chHHHHHHHHHHHHhhcCc
Confidence 6544 3567899999999999988774311 11000 0000000000000 1111235778889999999
Q ss_pred cEEEeeee
Q 008457 234 DVEELGLC 241 (564)
Q Consensus 234 ~~~~~~~~ 241 (564)
.+..+...
T Consensus 218 ~~~gl~~S 225 (245)
T COG1189 218 QVKGLIKS 225 (245)
T ss_pred EEeeeEcc
Confidence 98765443
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0024 Score=63.95 Aligned_cols=106 Identities=19% Similarity=0.162 Sum_probs=63.4
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc--------CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG--------SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~--------~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
....+.+|+|-.||+|++...+... ...++++.|+++.++.+++.|+..++... ....+..-|.-..+.
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~--~~~~i~~~d~l~~~~- 119 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN--SNINIIQGDSLENDK- 119 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC--BGCEEEES-TTTSHS-
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc--ccccccccccccccc-
Confidence 4446779999999999887666542 45689999999999999999998876532 122233333221111
Q ss_pred hhhhhhcCCCccEEEEeceeeCC---------------------CChHHHHHHHHHHhhccCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIP---------------------EAILPLFATAKELTASSNK 486 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~---------------------~~~~~l~~~~~~ll~~~~g 486 (564)
.....+||+||++.+.-.. ..--.++..+-..| +++|
T Consensus 120 ----~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L-k~~G 177 (311)
T PF02384_consen 120 ----FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLL-KPGG 177 (311)
T ss_dssp ----CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTE-EEEE
T ss_pred ----cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhc-cccc
Confidence 0124689999987542111 01124677777888 8877
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0083 Score=55.19 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=70.3
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh-hh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI-KE 449 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~-~~ 449 (564)
+...+++||||.=|| .+.++.+. ...+|+++|+++...+....-++..+.. ++|.+..-.-. +.++++ ..
T Consensus 71 ~~~ak~~lelGvfTG-ySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~---~KI~~i~g~a~--esLd~l~~~ 144 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTG-YSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD---HKITFIEGPAL--ESLDELLAD 144 (237)
T ss_pred HhCCceEEEEecccC-HHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc---ceeeeeecchh--hhHHHHHhc
Confidence 347889999999998 44443332 3569999999999999998877777765 45555543221 122222 23
Q ss_pred hcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 450 ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 450 ~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
...+.||+++. | -+..........+-+|+ ++||
T Consensus 145 ~~~~tfDfaFv-D--adK~nY~~y~e~~l~Ll-r~GG 177 (237)
T KOG1663|consen 145 GESGTFDFAFV-D--ADKDNYSNYYERLLRLL-RVGG 177 (237)
T ss_pred CCCCceeEEEE-c--cchHHHHHHHHHHHhhc-cccc
Confidence 46779999872 2 23445557788888999 9887
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0039 Score=60.63 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=66.7
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+++-+.+.....++..|||+|+|+|.++..++..+ ++|+++|.++...+.+++.... ..++.+..-|..+.+.
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~------~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS------NPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT------CSSEEEEES-TTTSCG
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh------cccceeeecchhcccc
Confidence 34445444445588999999999999999888776 8999999999999999987652 2567777666554322
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHH
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKE 479 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ 479 (564)
... .......|+++ +.|+. -.+++..+-.
T Consensus 91 ~~~----~~~~~~~vv~N-lPy~i--s~~il~~ll~ 119 (262)
T PF00398_consen 91 YDL----LKNQPLLVVGN-LPYNI--SSPILRKLLE 119 (262)
T ss_dssp GGH----CSSSEEEEEEE-ETGTG--HHHHHHHHHH
T ss_pred HHh----hcCCceEEEEE-ecccc--hHHHHHHHhh
Confidence 211 12344566654 66632 3445544444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0023 Score=61.96 Aligned_cols=116 Identities=16% Similarity=0.255 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCc-EEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDV-FVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
....+|||+|.|.|..+..+....|.. .++-++.|+..-+.......... ........|+....++.| ....|++|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp-~ad~ytl~i 190 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP-AADLYTLAI 190 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC-ccceeehhh
Confidence 566789999999998877766666654 46778888876655443221100 011112233332222212 234566666
Q ss_pred EcccccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCCc
Q 008457 152 MVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190 (564)
Q Consensus 152 ~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~~ 190 (564)
...-|-+.. +..+...++.+..++.|||.|+|.+.+.+.
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 655443432 344556899999999999999999887654
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0082 Score=58.60 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcc--c------ccCCCeeEEEecCCcccccCCCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHK--D------FTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~--~------~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
....+||-+|.|.|--++.+.+. | -.+++-+|++|.|++.++... . -...+++++..|+.+.-- -..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr---~a~ 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR---TAA 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH---hhc
Confidence 45678999999999998888775 5 568999999999999998431 1 123578888888754221 134
Q ss_pred CceeEEEEcccccCCC---hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 145 SSIDIVTMVFVLSAVS---PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~---~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+.||.|+.-.-=..-+ +---..+..-+.+.|+++|.+++..
T Consensus 364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 5899999832211110 1122357778889999999999853
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0038 Score=55.89 Aligned_cols=111 Identities=14% Similarity=0.267 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--------CCCeeEEEecCCcccccCCCCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--------ETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--------~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
++...+.|||||-|.++..|+..+|+.-+.|+++-...-+..+.+.... ..++.....+.... ++.-|..+
T Consensus 59 ~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~-lpn~f~kg 137 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF-LPNFFEKG 137 (249)
T ss_pred cccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh-ccchhhhc
Confidence 4557899999999999999999999999999999887777776654211 12344433333211 01011112
Q ss_pred ceeEEEEcccccCCC------hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 146 SIDIVTMVFVLSAVS------PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~------~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
...-.+..+-=-|+- .--...++.+..-+|++||.++..+
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 222222211111220 0012357788888999999998754
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0043 Score=60.66 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=54.8
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI 134 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~ 134 (564)
.+..+..+.+.+.++...+|.--|.|.++..+++..|+++++|+|.++.+++.|+++......++.++..++.
T Consensus 7 Vll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 7 VLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred ccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 4556777777778999999999999999999999988899999999999999999987655566777666653
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0072 Score=52.65 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=41.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHh-----cCCCEEEEEcCChhHHHHHHHHHHhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAA-----GSADLVVATDGDSIALDLLAQNVTANL 423 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~-----~~~~~v~~tD~~~~~l~~~~~n~~~n~ 423 (564)
.+..+|+|+|||-|.++..++. ....+|+++|.++..++.+++......
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4677999999999999888888 566799999999999988887776644
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.07 Score=52.36 Aligned_cols=175 Identities=12% Similarity=0.094 Sum_probs=102.3
Q ss_pred CCCceEEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhc--CCC---CCCCCeEEEeCCcccHHHHHHHh
Q 008457 322 FEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLAR--NPT---IVAGKKVLELGCGCGGICSMVAA 396 (564)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~--~~~---~~~~~~vLelG~G~G~l~~~~~~ 396 (564)
.+.++.+.++-.|.++++....+.+-.+.+.. +|-.. +|. ...-.+||=||-|-|.....+..
T Consensus 242 qspYQ~iVvTr~g~d~rLYldG~LQfsTrDe~------------RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellk 309 (508)
T COG4262 242 QSPYQRIVVTRRGDDLRLYLDGGLQFSTRDEY------------RYHESLVYPALSSVRGARSVLVLGGGDGLALRELLK 309 (508)
T ss_pred cCccceEEEEEecCceEEEEcCceeeeechhh------------hhhheeeecccccccccceEEEEcCCchHHHHHHHh
Confidence 35677788888888888876554421111111 11111 222 22456899999999944455554
Q ss_pred cC-CCEEEEEcCChhHHHHHHHHHHh---cCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC-C---
Q 008457 397 GS-ADLVVATDGDSIALDLLAQNVTA---NLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP-E--- 468 (564)
Q Consensus 397 ~~-~~~v~~tD~~~~~l~~~~~n~~~---n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-~--- 468 (564)
.. ..+|+.+|++|+|++.+++|... |.......++.+..- |.+.-++. ....||+||. |..--. .
T Consensus 310 yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~d-----DAf~wlr~-a~~~fD~vIV-Dl~DP~tps~~ 382 (508)
T COG4262 310 YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVND-----DAFQWLRT-AADMFDVVIV-DLPDPSTPSIG 382 (508)
T ss_pred CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEec-----cHHHHHHh-hcccccEEEE-eCCCCCCcchh
Confidence 44 56999999999999999976543 333333345555432 22222221 2348999883 322110 0
Q ss_pred --ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh---HHHHHHHHcCCeEEEE
Q 008457 469 --AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDK 524 (564)
Q Consensus 469 --~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~g~~~~~~ 524 (564)
.-.++-..+++.| +++| .+++....--.+.+ ....+++++|+.+...
T Consensus 383 rlYS~eFY~ll~~~l-~e~G--------l~VvQags~y~tp~vfw~i~aTik~AG~~~~Py 434 (508)
T COG4262 383 RLYSVEFYRLLSRHL-AETG--------LMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPY 434 (508)
T ss_pred hhhhHHHHHHHHHhc-CcCc--------eEEEecCCCccCCceeeeehhHHHhCcceeeee
Confidence 1245667778888 8877 66665444333333 3457788999887654
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.024 Score=55.48 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=77.7
Q ss_pred eEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEE
Q 008457 379 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 458 (564)
Q Consensus 379 ~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~I 458 (564)
+|+||.||+|++...+...+...|.++|+++.+++..+.|....-. .-++..++.. .+ ...+|+|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~-----~~Di~~~~~~---------~~-~~~~D~l 66 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLI-----EGDITKIDEK---------DF-IPDIDLL 66 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCc-----cCccccCchh---------hc-CCCCCEE
Confidence 6999999999887777766777899999999999999998642100 0111111111 11 3479999
Q ss_pred EEeceeeC----------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-------hhHHHHHHHHcCCeE
Q 008457 459 LGTDVSYI----------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-------EPSMLSAATQCGFRL 521 (564)
Q Consensus 459 i~~d~~y~----------~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~-------~~~~~~~~~~~g~~~ 521 (564)
+++-..-. ......|+..+.+++ +. ..|.+++.-...... ...+.+.+.+.|+.+
T Consensus 67 ~~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i-~~-------~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~ 138 (275)
T cd00315 67 TGGFPCQPFSIAGKRKGFEDTRGTLFFEIIRIL-KE-------KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNV 138 (275)
T ss_pred EeCCCChhhhHHhhcCCCCCchHHHHHHHHHHH-Hh-------cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEE
Confidence 97753321 122344676677777 33 245666655554321 235677788889988
Q ss_pred EEEc
Q 008457 522 VDKW 525 (564)
Q Consensus 522 ~~~~ 525 (564)
....
T Consensus 139 ~~~~ 142 (275)
T cd00315 139 YWKL 142 (275)
T ss_pred EEEE
Confidence 7663
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.016 Score=49.57 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=58.4
Q ss_pred EEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCC---------hhHHHHHHH
Q 008457 101 FVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVS---------PEKMSLVLQ 169 (564)
Q Consensus 101 ~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~---------~~~~~~~l~ 169 (564)
+|+|+|+-+++++.++++....+ .+++++..+-.. +..-++.+++|+++.|.. ++| ++....+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~--l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN--LDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG--GGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH--HHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHH
Confidence 58999999999999999876543 468887776543 332334468999998764 332 355678899
Q ss_pred HHHhccCCCeEEEEEecCCCc
Q 008457 170 NIKKVLKPTGYVLFRDYAIGD 190 (564)
Q Consensus 170 ~~~r~LkpgG~lii~~~~~~~ 190 (564)
.+.++|+|||.+.+..+...+
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STC
T ss_pred HHHHhhccCCEEEEEEeCCCC
Confidence 999999999999998766543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.025 Score=57.43 Aligned_cols=134 Identities=20% Similarity=0.189 Sum_probs=81.8
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC---CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~---~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
..+|.+|||+.|+-|+=+..+++.. +..|++.|.++.=++.++.|+..-+.. ++.+...|=...... ..
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~----nv~~~~~d~~~~~~~----~~ 225 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR----NVIVVNKDARRLAEL----LP 225 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC----ceEEEeccccccccc----cc
Confidence 3478999999999998888877754 346799999999999999999987763 334443332111000 01
Q ss_pred cCCCccEEEEe-------------ceeeCC---------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--cCC
Q 008457 451 NNEGFEVILGT-------------DVSYIP---------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--QVD 506 (564)
Q Consensus 451 ~~~~fD~Ii~~-------------d~~y~~---------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--~~~ 506 (564)
...+||.|+.= |+.+.. ..-..+++...++| +|+| +++.++-.- .+.
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~l-k~GG--------~LVYSTCS~~~eEN 296 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL-KPGG--------VLVYSTCSLTPEEN 296 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc-CCCC--------EEEEEccCCchhcC
Confidence 11259999821 122221 13556778888888 9987 444443333 333
Q ss_pred hhHHHHHHHHc-CCeEEEE
Q 008457 507 EPSMLSAATQC-GFRLVDK 524 (564)
Q Consensus 507 ~~~~~~~~~~~-g~~~~~~ 524 (564)
+.-....+++. +++.+.+
T Consensus 297 E~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 297 EEVVERFLERHPDFELEPV 315 (355)
T ss_pred HHHHHHHHHhCCCceeecc
Confidence 32233444343 6666655
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.11 Score=46.90 Aligned_cols=151 Identities=19% Similarity=0.184 Sum_probs=91.9
Q ss_pred ceechhHH-HHHHHHhc---CCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHH-HHHHHhcCCCCCC
Q 008457 355 LMLWESAH-LMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLL-AQNVTANLKPPFL 428 (564)
Q Consensus 355 ~~~W~~~~-~l~~~l~~---~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~-~~n~~~n~~~~~~ 428 (564)
...|+.-+ .||..++. +..+.+|.+||=||+.+|.-.+.++-.- ...|.+++.++....-+ .---..+++-+
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~P-- 128 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIP-- 128 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCcee--
Confidence 56786643 45555554 2356689999999999997778777653 46899999998665433 22222333211
Q ss_pred CceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh-
Q 008457 429 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE- 507 (564)
Q Consensus 429 ~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~- 507 (564)
.- ++....+....+ -+..|+|. .| +-.+...+-+.......| +++| .++++-+.|..+.
T Consensus 129 -----IL---~DA~~P~~Y~~~-Ve~VDviy-~D-VAQp~Qa~I~~~Na~~FL-k~~G--------~~~i~iKArSIdvT 188 (231)
T COG1889 129 -----IL---EDARKPEKYRHL-VEKVDVIY-QD-VAQPNQAEILADNAEFFL-KKGG--------YVVIAIKARSIDVT 188 (231)
T ss_pred -----ee---cccCCcHHhhhh-cccccEEE-Ee-cCCchHHHHHHHHHHHhc-ccCC--------eEEEEEEeeccccc
Confidence 10 111111111111 12344432 23 123567788889999999 9888 7788888876432
Q ss_pred ---hH----HHHHHHHcCCeEEEEcCC
Q 008457 508 ---PS----MLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 508 ---~~----~~~~~~~~g~~~~~~~~~ 527 (564)
.. -.+.+.+.||++.+....
T Consensus 189 ~dp~~vf~~ev~kL~~~~f~i~e~~~L 215 (231)
T COG1889 189 ADPEEVFKDEVEKLEEGGFEILEVVDL 215 (231)
T ss_pred CCHHHHHHHHHHHHHhcCceeeEEecc
Confidence 22 245677889999998755
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 564 | ||||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 1e-04 | ||
| 3bzb_A | 281 | Crystal Structure Of Uncharacterized Protein Cmq451 | 3e-04 |
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
| >pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From The Primitive Red Alga Cyanidioschyzon Merolae Length = 281 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Length = 289 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 4e-26
Identities = 42/268 (15%), Positives = 80/268 (29%), Gaps = 58/268 (21%)
Query: 12 GKEEAPKLQIYPTPNTGVSPFWRDKYER-EAKKYWDLFYKRHQDRFFKDRHYLD---KEW 67
G + +P P G + Y+R E + Y Y + +
Sbjct: 3 GADRSPNAGAAPDSAPGQAAV-ASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCL 61
Query: 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVF-VYACDFSPRAVNLVMTHKD-----F 121
+ F+ + G+G T++ L++A + DF + F
Sbjct: 62 AQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAF 121
Query: 122 TETRVSTFVCDLISDDL----------------------------SRQISPSSIDIVTMV 153
+ S C + + +P D +
Sbjct: 122 NWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSA 181
Query: 154 FVLSAVSPEKMS--LVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRG 211
F L AVSP+ S L +I +L+P G++L + E++Y+ G
Sbjct: 182 FCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA----------------LEESWYLAG 225
Query: 212 DGT-RAFYFSNDFLTSLFKENGFDVEEL 238
+ S + + +G+ V +L
Sbjct: 226 EARLTVVPVSEEEVREALVRSGYKVRDL 253
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 103 bits (256), Expect = 1e-24
Identities = 41/188 (21%), Positives = 65/188 (34%), Gaps = 8/188 (4%)
Query: 353 TGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD-GDSIA 411
+W A +A L P ++AGK V ELG G G + + AD VVATD D
Sbjct: 56 WTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEI 115
Query: 412 LDLLAQNVTANLKPPFLAKLIT------KRLEWGNRDHIEAIKEENNEGFEVILGTDVSY 465
L+ L N+ + ++ + WG+ + + F+V+L D+
Sbjct: 116 LNSLESNIREHTANSCSSETVKRASPKVVPYRWGD-SPDSLQRCTGLQRFQVVLLADLLS 174
Query: 466 IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525
+A L + K L A F + + G + + W
Sbjct: 175 FHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPW 234
Query: 526 PSKNSASP 533
S P
Sbjct: 235 LSPLQMDP 242
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Length = 263 | Back alignment and structure |
|---|
Score = 90.1 bits (223), Expect = 2e-20
Identities = 36/253 (14%), Positives = 72/253 (28%), Gaps = 57/253 (22%)
Query: 34 RDKYERE--AKKYWDLFYKRHQDRFFKDR--HYLDKEWGRYFSGAGRKDVLEVGCGAGNT 89
D+Y++ + Y +Y + + + + F G + + G+G T
Sbjct: 8 GDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPT 67
Query: 90 IFPLIAAYPDVF--VYACDFSPRAVNLVMTHKD-----FTETRVSTFV------------ 130
I+ ++AA D F + DF+ R + + T F
Sbjct: 68 IYQVLAAC-DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEE 126
Query: 131 --------------CDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMS--LVLQNIKKV 174
CD+ + D V + + + L N+ +
Sbjct: 127 KEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASL 186
Query: 175 LKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGT-RAFYFSNDFLTSLFKENGF 233
LKP G+++ + Y+ G + + GF
Sbjct: 187 LKPGGHLVTTVT----------------LRLPSYMVGKREFSCVALEKGEVEQAVLDAGF 230
Query: 234 DVEELGLCCKQVE 246
D+E+L +
Sbjct: 231 DIEQLLHSPQSYS 243
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 8e-20
Identities = 37/204 (18%), Positives = 75/204 (36%), Gaps = 12/204 (5%)
Query: 33 WRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFP 92
+ ++ A Y D F + ++ + + + + + VLE G G GN
Sbjct: 5 FNGLFDEWAHTY-DSFVQGEDIQYKEVFAHYEDILEDVVNKSFGN-VLEFGVGTGNLTNK 62
Query: 93 LIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152
L+ A V Y + S + S D +S ++ P+SID +
Sbjct: 63 LLLAGRTV--YGIEPSREMRMIAKEK---LPKEFSITEGDFLSFEV-----PTSIDTIVS 112
Query: 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGD 212
+ ++ ++ ++ + ++L G ++F D D T + K + D
Sbjct: 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLAND 172
Query: 213 GTRAFYFSNDFLTSLFKENGFDVE 236
+Y + ++F+ NGF V
Sbjct: 173 LQTEYYTRIPVMQTIFENNGFHVT 196
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 3e-16
Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 24/196 (12%)
Query: 44 YWDLFYKRHQDRFFKDRHYLDKEWGRYFSG-AGRKDVLEVGCGAGNTIFPLIAAYPDVFV 102
+ +Y +++F R + RY G + VL++GCG G F + +
Sbjct: 9 HTSDYYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGE--FLELCKEEGIES 66
Query: 103 YACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPE 162
D + + F E + + D I + +D V + + + PE
Sbjct: 67 IGVDINEDMIK-------FCEGKFNVVKSDAIEYLK--SLPDKYLDGVMISHFVEHLDPE 117
Query: 163 KMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSND 222
++ +L +K + Y++ L NFY+ D T +
Sbjct: 118 RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLI----------NFYI--DPTHKKPVHPE 165
Query: 223 FLTSLFKENGFDVEEL 238
L + + GF ++
Sbjct: 166 TLKFILEYLGFRDVKI 181
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-15
Identities = 27/183 (14%), Positives = 48/183 (26%), Gaps = 8/183 (4%)
Query: 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
K VL+ G G + Y + S + +++ D+
Sbjct: 25 KTVLDCGAGGDLPPLSI-FVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDI--R 81
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL 196
L S+ V + + + + IK+VLKP G D +
Sbjct: 82 KLP--FKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKG 139
Query: 197 TGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNR 256
+ RG+ Y S + FK V + N ++
Sbjct: 140 EKIGEGEFLQLE-RGEKVIHSYVSLEEADKYFK--DMKVLFKEDRVVERINDGLKIKQGY 196
Query: 257 RWV 259
Sbjct: 197 VDY 199
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 3e-15
Identities = 39/207 (18%), Positives = 61/207 (29%), Gaps = 22/207 (10%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
Y A +Y F R +G R DVLE+ G G L
Sbjct: 12 LSYYRARASEYDATFVPYMDS-------AAPAALERLRAGNIRGDVLELASGTGYWTRHL 64
Query: 94 IAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153
V A D S + H V DL R D V
Sbjct: 65 SGLADRVT--ALDGSAEMIAEAGRH---GLDNVEFRQQDLFDWTPDR-----QWDAVFFA 114
Query: 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDG 213
L+ V ++ ++++ + P G V F D + E+ + +++ ++ DG
Sbjct: 115 HWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQ-DG 173
Query: 214 TR----AFYFSNDFLTSLFKENGFDVE 236
+ S LT G+
Sbjct: 174 RSFRIVKVFRSPAELTERLTALGWSCS 200
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-14
Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 33/205 (16%)
Query: 42 KKYWDLFYKRHQDRFFKDRHYLD---KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP 98
+ Y+ K HY + ++ ++ VL++GC +G +
Sbjct: 3 NSPKNSLYE------EKSGHYYNAVNPNLLKHIKKEWKE-VLDIGCSSGALGAAIKENGT 55
Query: 99 DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSA 158
V + P A D + D+ + D+ D V VL
Sbjct: 56 R--VSGIEAFPEAAEQAKEKLDHVV------LGDIETMDM--PYEEEQFDCVIFGDVLEH 105
Query: 159 VS-PEKMSLVLQNIKKVLKPTGYVLF----RDYAIGDLAQERLTGKDQKISENFYVRGDG 213
+ P V++ +K +K G +L + L + Y D
Sbjct: 106 LFDPWA---VIEKVKPYIKQNGVILASIPNVSHISVLAP---LLAGNWT--YTEYGLLDK 157
Query: 214 TRAFYFSNDFLTSLFKENGFDVEEL 238
T +F+ + + +F + G+ + ++
Sbjct: 158 THIRFFTFNEMLRMFLKAGYSISKV 182
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 4e-14
Identities = 25/204 (12%), Positives = 51/204 (25%), Gaps = 31/204 (15%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
Y L D+ ++ +L+VG G G L
Sbjct: 6 SKAYSSPTFDAEALL------GTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHL 59
Query: 94 IAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153
+ + + + R V L + + SP +
Sbjct: 60 ASLGHQIE--GLEPATRLVEL--ARQTHPSVTFH--HGTITDLSD----SPKRWAGLLAW 109
Query: 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDG 213
+ L + P ++ L ++ ++ G +L + G +
Sbjct: 110 YSLIHMGPGELPDALVALRMAVEDGGGLLM-SFFSGPSLEPM--------------YHPV 154
Query: 214 TRAFYFSNDFLTSLFKENGFDVEE 237
A+ + L + GF V
Sbjct: 155 ATAYRWPLPELAQALETAGFQVTS 178
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Length = 265 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 4e-13
Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 55/244 (22%)
Query: 34 RDKYERE--AKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSGAGRKDVLEVGCGAGNT 89
+D Y + Y + +Y ++ +L K + F K L + G+G T
Sbjct: 9 KDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPT 68
Query: 90 IFPLIAAYPDV-FVYACDFSPRAVN--------------------LVMTHKDFTET---- 124
I+ L++A + D++ + + V +
Sbjct: 69 IYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEK 128
Query: 125 ------RVSTFV-CDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMS--LVLQNIKKVL 175
+ + CD+ +S D + L A P+ + L+N+ +L
Sbjct: 129 EEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLL 188
Query: 176 KPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGT-RAFYFSNDFLTSLFKENGFD 234
KP G+++ D + ++Y+ G+ + + + +E G+
Sbjct: 189 KPGGFLVMVDA----------------LKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYT 232
Query: 235 VEEL 238
+E+
Sbjct: 233 IEQF 236
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 7e-13
Identities = 39/205 (19%), Positives = 75/205 (36%), Gaps = 35/205 (17%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
+ER +Y + ++ H+ + + + GR +E+G G G PL
Sbjct: 14 WHIFERFVNEY-ERWFLVHRFAYLSELQAVKC-----LLPEGR--GVEIGVGTGRFAVPL 65
Query: 94 IAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153
+ S R + + V ++L + S D MV
Sbjct: 66 KI------KIGVEPSERMAEIA------RKRGVFVLKGTA--ENLP--LKDESFDFALMV 109
Query: 154 FVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGD 212
+ V PE+ L+ ++LK GY++ +G + +E G+ + +N
Sbjct: 110 TTICFVDDPER---ALKEAYRILKKGGYLI-----VGIVDRESFLGR--EYEKNKEKSVF 159
Query: 213 GTRAFYFSNDFLTSLFKENGFDVEE 237
A +FS + L L ++ GF+ +
Sbjct: 160 YKNARFFSTEELMDLMRKAGFEEFK 184
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 9e-13
Identities = 23/208 (11%), Positives = 59/208 (28%), Gaps = 19/208 (9%)
Query: 37 YEREAKKYWDLFYKR---HQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
R + + F ++ + + +F ++LE+G G+ L
Sbjct: 4 ISRNYDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRP---GNLLELGSFKGDFTSRL 60
Query: 94 IAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153
+ D + + S A++ + + + I P D + +
Sbjct: 61 QEHFND--ITCVEASEEAISHA---QGRLKDGI-----TYIHSRFEDAQLPRRYDNIVLT 110
Query: 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDG 213
VL + + ++L+ + L G + ++++ + +
Sbjct: 111 HVLEHI-DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEF 169
Query: 214 TRA--FYFSNDFLTSLFKENGFDVEELG 239
++ D L G V
Sbjct: 170 AHGHRCTYALDTLERDASRAGLQVTYRS 197
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 1e-12
Identities = 31/210 (14%), Positives = 66/210 (31%), Gaps = 27/210 (12%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRF--FKDRHYLDKEWGRYFS----GAGRKDVLEVGCGAG 87
+ +A +YW H +D E R F G G L+ G G G
Sbjct: 46 EKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIG 105
Query: 88 NTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSI 147
L+ + + ++ V F+ + + + P++
Sbjct: 106 RITKNLLTKLYAT-TDLLEPVKHMLE--EAKRELAGMPVGKFIL---ASMETATLPPNTY 159
Query: 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENF 207
D++ + + ++ ++ ++ L P GY+ F++ + E+
Sbjct: 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG-------DRFLVDKED- 211
Query: 208 YVRGDGTRAFYFSNDFLTSLFKENGFDVEE 237
+ S+ LF E+G V +
Sbjct: 212 -------SSLTRSDIHYKRLFNESGVRVVK 234
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-12
Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 22/211 (10%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD-VLEVGCGAGNTIFP 92
+ K++ + KY + + +F S +L++G G G
Sbjct: 7 KRKFDAVSGKYDE-----QRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAF 61
Query: 93 LIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152
L+ YP+ D S + + + +V D D D+V
Sbjct: 62 LMEKYPEATFTLVDMSEKMLEIAKNRFR-GNLKVKYIEADYSKYDF-----EEKYDMVVS 115
Query: 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKD--QKISENFYVR 210
+ + E + + +LK +G + D G+ A K ++ EN +
Sbjct: 116 ALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLT 175
Query: 211 GDGTRAFY--------FSNDFLTSLFKENGF 233
+ A Y + + KE GF
Sbjct: 176 EEEIAAGYERSKLDKDIEMNQQLNWLKEAGF 206
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 2e-12
Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 15/179 (8%)
Query: 10 GIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGR 69
G+ K A K P+ V+ W + + + + + +R L + +
Sbjct: 1 GMEKLSAIK-----KPDINVADAWEQYWNKTLVNSTPVLWDANVER--AVVVDLPR-FEL 52
Query: 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTF 129
F+ +++ CG G L +P V D S A+ + T +S
Sbjct: 53 LFNPELP--LIDFACGNGTQTKFLSQFFPRVI--GLDVSKSALEIAAKE--NTAANISYR 106
Query: 130 VCDLISDDLSRQISPSSID-IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187
+ D + + + QI D + M + EK L+ Q+++ +L G + +
Sbjct: 107 LLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 2e-12
Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 10/148 (6%)
Query: 37 YEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA 96
Y A+ Y+D Y+R +R + ++++ + R+ VL++ CG G L
Sbjct: 5 YTLLAE-YYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRR-VLDLACGTGIPTLELAER 62
Query: 97 YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF-V 155
+ V D + + ++ D++ + D VTM F
Sbjct: 63 GYE--VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNE-----FDAVTMFFST 115
Query: 156 LSAVSPEKMSLVLQNIKKVLKPTGYVLF 183
+ E + + + + LKP G +
Sbjct: 116 IMYFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 4e-12
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 9/161 (5%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH-KDFTETRVSTFVCDLISDD 137
VLE GCG G L PD + + D SP ++ + + V ++ S
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP 100
Query: 138 LSRQISPSSIDIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL 196
SS D + + FVL + PE+ L+++KKVLKP G + + G
Sbjct: 101 F----EDSSFDHIFVCFVLEHLQSPEE---ALKSLKKVLKPGGTITVIEGDHGSCYFHPE 153
Query: 197 TGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE 237
K + + + L +E+GF+
Sbjct: 154 GKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIR 194
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 4e-12
Identities = 33/210 (15%), Positives = 65/210 (30%), Gaps = 32/210 (15%)
Query: 37 YEREAKKYWD-----------LFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCG 85
Y + AK YW + R +L + + G L+ G G
Sbjct: 31 YSK-AKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAG 89
Query: 86 AGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145
G L+ V D + + T+ RV + C + D P
Sbjct: 90 IGRITKRLLLPLFRE-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF---TPEPD 145
Query: 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISE 205
S D++ + +V+ ++ + ++ L+ K L+P G ++ +D +
Sbjct: 146 SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE--------------G 191
Query: 206 NFYVRGDGTRAFYFSNDFLTSLFKENGFDV 235
D + D + + G +
Sbjct: 192 VILDDVD--SSVCRDLDVVRRIICSAGLSL 219
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 6e-12
Identities = 30/232 (12%), Positives = 73/232 (31%), Gaps = 40/232 (17%)
Query: 35 DKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLI 94
+ Y + A +D + D + K ++ ++ L++ CG GN L
Sbjct: 1 NCYNKFAH-IYDKLIRADVD-YKKWSDFIIEKCVENNLVFDD--YLDLACGTGNLTENLC 56
Query: 95 AAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154
+ + +A D S ++ + D+ + +++R+ D++T
Sbjct: 57 PKFKN--TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRK-----FDLITCCL 109
Query: 155 --VLSAVSPEKMSLVLQNIKKVLKPTGYVLF----RDYAIGDLAQERLTGKDQKISE--- 205
+ + + + + LK G +F L D ++
Sbjct: 110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWE 169
Query: 206 ------------NFYVR-GDGTRAF-------YFSNDFLTSLFKENGFDVEE 237
+F+VR G+ + F + + + K ++ +
Sbjct: 170 NQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILD 221
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 3e-11
Identities = 39/210 (18%), Positives = 63/210 (30%), Gaps = 34/210 (16%)
Query: 37 YEREAKKYWDL---FYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD--VLEVGCGAGNTIF 91
+ A+K WD F+ ++ + +F +K+ VL+VGCG G +
Sbjct: 12 WHESAEKKWDSSAEFWNQNSQEMW--DSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTY 69
Query: 92 PLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS---DDLSRQISPSSID 148
L D S + + +S DL S ++ +
Sbjct: 70 KLSRTGYK--AVGVDISEVMIQK--GKERGEGPDLSFIKGDLSSLPFEN-------EQFE 118
Query: 149 IVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENF 207
+ + L P + L IK+VLK GY +E
Sbjct: 119 AIMAINSLEWTEEPLR---ALNEIKRVLKSDGYACIAILGPTAKPREN---------SYP 166
Query: 208 YVRGDGTRAFYFSNDFLTSLFKENGFDVEE 237
+ G L KE GF V +
Sbjct: 167 RLYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 3e-11
Identities = 34/234 (14%), Positives = 69/234 (29%), Gaps = 45/234 (19%)
Query: 37 YEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA 96
Y E + +DL ++ + ++ L R+ A +L+V CG G + L +
Sbjct: 14 YSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAAS--LLDVACGTGMHLRHLADS 71
Query: 97 YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF-V 155
+ V + S + + D+ L R+ VT +F
Sbjct: 72 FGT--VEGLELSADMLAIARRRNP----DAVLHHGDMRDFSLGRR-----FSAVTCMFSS 120
Query: 156 LS-AVSPEKMSLVLQNIKKVLKPTGYVLF---------------------RDYAIGDLAQ 193
+ ++ L+ + P G V+ + ++
Sbjct: 121 IGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSH 180
Query: 194 ERLTGKDQKISENFYVR--GDGTRAF-------YFSNDFLTSLFKENGFDVEEL 238
G+ +I ++ V G F+ + F G VE +
Sbjct: 181 SSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFM 234
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 5e-11
Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 14/206 (6%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
D + + A+ + D RH R D+ G + VL++GCG G + L
Sbjct: 14 LDSWHQNAQAWIDAV--RHGAIES-RRQVTDQAILLAILGRQPERVLDLGCGEGWLLRAL 70
Query: 94 IAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153
+ D V+ L + D++
Sbjct: 71 ADRGIEAV--GVDGDRTLVDAARAAGA--GEVHLASYAQLAEAKVPV---GKDYDLICAN 123
Query: 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL-TGKDQKISENFYVRGD 212
F L + +L ++ +L P G ++ + +A G ++ F
Sbjct: 124 FALLHQDIIE---LLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQ 180
Query: 213 GTRAFYFSNDFLTSLFKENGFDVEEL 238
++ + + G + L
Sbjct: 181 PMPWYFRTLASWLNALDMAGLRLVSL 206
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 5e-11
Identities = 36/236 (15%), Positives = 66/236 (27%), Gaps = 45/236 (19%)
Query: 35 DKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLI 94
YE + +DLFY + + + A +L+V CG G +
Sbjct: 2 HMYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRTPEASS--LLDVACGTGTHLEHFT 59
Query: 95 AAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154
+ D + S + + D+ L R+ V +F
Sbjct: 60 KEFGD--TAGLELSEDMLTHARKRLP----DATLHQGDMRDFRLGRK-----FSAVVSMF 108
Query: 155 -VLSAV-SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYV--- 209
+ + + E++ + + + L+P G V+ + + + D + V
Sbjct: 109 SSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARV 168
Query: 210 --------------------RGDGTRAF-------YFSNDFLTSLFKENGFDVEEL 238
G G R F F + F G VE L
Sbjct: 169 SHSVREGNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYL 224
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 7e-11
Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 19/204 (9%)
Query: 35 DKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD--VLEVGCGAGNTIFP 92
+Y R Y D+ + ++ R + +K VL++ CG G F
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRI--------ETLEPLLMKYMKKRGKVLDLACGVGGFSFL 55
Query: 93 LIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152
L V D S + + E+ V V D + LS + D V
Sbjct: 56 L--EDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGD--ARKLS--FEDKTFDYVIF 109
Query: 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGD 212
+ + P +++ V + +++VLKP+G + + +L K+ + Y
Sbjct: 110 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL---KESLVVGQKYWISK 166
Query: 213 GTRAFYFSNDFLTSLFKENGFDVE 236
+ +++ F V
Sbjct: 167 VIPDQEERTVVIEFKSEQDSFRVR 190
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-10
Identities = 39/236 (16%), Positives = 71/236 (30%), Gaps = 53/236 (22%)
Query: 37 YEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD--VLEVGCGAGNTIFPLI 94
YE+ A Y D +D Y EW + + ++GCG G L
Sbjct: 4 YEQFAYVY---------DELMQDVPY--PEWVAWVLEQVEPGKRIADIGCGTGTATLLLA 52
Query: 95 AAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154
Y V D S + + T V +V D+ +L P +D +T++
Sbjct: 53 DHYE---VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELEL-----PEPVDAITILC 104
Query: 155 -VLSAV-SPEKMSLVLQNIKKVLKPTGYVLF---------------------RDYAIGDL 191
L+ + + + + ++L G +LF +
Sbjct: 105 DSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWF 164
Query: 192 AQERLTGKDQKISENFYVRGDGTRAF---------YFSNDFLTSLFKENGFDVEEL 238
A F++ G+ R + + + +E GF V +
Sbjct: 165 ADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAV 220
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 26/209 (12%), Positives = 67/209 (32%), Gaps = 21/209 (10%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
+ K++++ K D F + + E G +++G G G
Sbjct: 6 KKKFDKKGAKNMDEIS----KTLFAPIYPIIAENIINRFGITAGTCIDIGSGPGALSI-A 60
Query: 94 IAAYPDVFVYACDFSPRAVNLVMTH--KDFTETRVSTFVCD---LISDDLSRQISPSSID 148
+A D + A DFS + + + R+ D + +D + D
Sbjct: 61 LAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED-------NYAD 113
Query: 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFY 208
++ + + + + I ++LK G ++ ++ + + + ++
Sbjct: 114 LIVSRGSVFFW-EDV-ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWK 171
Query: 209 VRGDGTRAFYFSNDFLTSLFKENGF-DVE 236
+ + + ++ E G E
Sbjct: 172 EFNRKNISQE-NVERFQNVLDEIGISSYE 199
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 2e-10
Identities = 43/209 (20%), Positives = 69/209 (33%), Gaps = 34/209 (16%)
Query: 30 SPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNT 89
P ++ + +++ + +R L K G +GA +LE+GCGAG
Sbjct: 2 EPDMTQAFDDDTLRFYRGNATAYAERQ-PRSATLTKFLGELPAGA---KILELGCGAGYQ 57
Query: 90 IFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149
++AA DV A D SP D + D
Sbjct: 58 AEAMLAAGFDVD--ATDGSPELAAEASRR-----LGRPVRTMLFHQLDA-----IDAYDA 105
Query: 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYV 209
V L V ++++ VL+ I + LKP G Y G+
Sbjct: 106 VWAHACLLHVPRDELADVLKLIWRALKPGGLFYA-SYKSGE----------------GEG 148
Query: 210 RGDGTRAF-YFSNDFLTSLFKENGFDVEE 237
R R + Y S ++L + + E G
Sbjct: 149 RDKLARYYNYPSEEWLRARYAEAGTWASV 177
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 39/214 (18%), Positives = 72/214 (33%), Gaps = 20/214 (9%)
Query: 32 FWRDKYER------EAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCG 85
W YE + +K W F + D+ F + K +L++G
Sbjct: 137 EWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFG-------KALEIVFSHHPKRLLDIGGN 189
Query: 86 AGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET--RVSTFVCDLISDDLSRQIS 143
G + +V V D P+ + ++ R+ +L+ D+
Sbjct: 190 TGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP---F 245
Query: 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKI 203
P+ D V M L S E++ +L + + + V + E + +I
Sbjct: 246 PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQI 305
Query: 204 SENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE 237
S F +G + S+D + G +VEE
Sbjct: 306 SLYFTAMANGNSKMFHSDDL-IRCIENAGLEVEE 338
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 5e-10
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 22/130 (16%)
Query: 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
+++ GCG G L+ + Y D + A+ V + + + + SD
Sbjct: 19 GVIVDYGCGNGFYCKYLLEFATKL--YCIDINVIALKEV-------KEKFDSVITL--SD 67
Query: 137 DLSRQISPSSIDIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDY-----AIGD 190
I +S+D + + + + + +K++LK G V+ D+ IG
Sbjct: 68 PKE--IPDNSVDFILFANSFHDMDDKQHV---ISEVKRILKDDGRVIIIDWRKENTGIGP 122
Query: 191 LAQERLTGKD 200
R+ KD
Sbjct: 123 PLSIRMDEKD 132
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 6e-10
Identities = 32/212 (15%), Positives = 74/212 (34%), Gaps = 24/212 (11%)
Query: 42 KKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVF 101
K +++ + + + + E + +K VL++GCG G A +
Sbjct: 11 KHFFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYA-AEHGAKK 69
Query: 102 VYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSP 161
V D S R + + T V + +D++ I P + ++V L +
Sbjct: 70 VLGIDLSERMLTEA--KRKTTSPVVCYEQKAI--EDIA--IEPDAYNVVLSSLALHYI-- 121
Query: 162 EKMSLVLQNIKKVLKPTGYVLF------------RDYAIGDLAQERLTGKDQKISENFYV 209
+ + + LK +G +F +D+ + + D+ +E+
Sbjct: 122 ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRT 181
Query: 210 R---GDGTRAFYFSNDFLTSLFKENGFDVEEL 238
G+ + ++ + +NGF + +
Sbjct: 182 SHFLGEDVQKYHRTVTTYIQTLLKNGFQINSV 213
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 406
L + K VL+LGCG G C A A V+ D
Sbjct: 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGID 74
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 37/226 (16%)
Query: 44 YWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD--VLEVGCGAGNTIFPLIAA-YPDV 100
++D +D E + + G VLE+ G G FP + +
Sbjct: 50 FYDEGAADTYRDLIQDADG-TSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWE-- 106
Query: 101 FVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF-VLSAV 159
V A + S + V L+ D+S V + ++ +
Sbjct: 107 -VTALELSTSVLAAFRKRLAEAPADVRDRC-TLVQGDMSAFALDKRFGTVVISSGSINEL 164
Query: 160 SPEKMSLVLQNIKKVLKPTGYVLF----------------RDYAIGD----LAQERLTGK 199
+ ++++ L+P G L ++ + R
Sbjct: 165 DEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA 224
Query: 200 DQKISENFYVRGDGTRAF--------YFSNDFLTSLFKENGFDVEE 237
++ + + T F + D + +GFDV
Sbjct: 225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIA 270
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 2e-09
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 3/112 (2%)
Query: 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH--KDFTETRVSTFVC 131
K V+++GCG GN + L+ + D S + D +
Sbjct: 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRIS 87
Query: 132 DLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183
S + R S D T++ V+ + ++ + + + +P V+
Sbjct: 88 LFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP-QTVIV 138
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 18/147 (12%)
Query: 44 YWDLFYKRHQDRFFKDRHYLDKEWG---RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDV 100
D + +F D++ L + L++GCG G L A DV
Sbjct: 5 IRD-------ENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDV 57
Query: 101 FVYACDFSPRAVNLV-MTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAV 159
A D + ++ V + T V DL + D + VL +
Sbjct: 58 D--AWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-----DRQYDFILSTVVLMFL 110
Query: 160 SPEKMSLVLQNIKKVLKPTGYVLFRDY 186
+ + ++ N+++ KP GY L
Sbjct: 111 EAKTIPGLIANMQRCTKPGGYNLIVAA 137
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 2e-09
Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 17/172 (9%)
Query: 79 VLEVGCGAGNTIFPL-IAAYPDVFVYACDFSPRAVNLV--MTHKDFTETRVSTFVCDLIS 135
V V CG + + L +A P V + D+ P A++ + +++ D
Sbjct: 122 VASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK 181
Query: 136 DDLSRQISPSSIDIVTMVFVLSAV-SPEKMSLVLQNIKKVLKPTGYVLFRDY-------A 187
D D++T + +++ + + + LKP G ++
Sbjct: 182 LDT-----REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSP 236
Query: 188 IGDLAQERLTGKDQKISENFYVRGDGTRAFYF-SNDFLTSLFKENGFDVEEL 238
+ + D ++ + + R R ++ + +E GF
Sbjct: 237 DSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRF 288
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 3e-09
Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 32/220 (14%)
Query: 35 DKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFS----GAGRKDVLEVGCGAGNTI 90
KY +++ + H + ++DK+ +L +G GAG
Sbjct: 13 GKYVESFRRFLN-----HSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEID 67
Query: 91 FPLIAA----YPDVFVYAC--DFSP----RAVNLVMTHKDFTETRVSTFVCDL--ISDDL 138
+++ YP V + + S + LV + + + +
Sbjct: 68 LQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRM 127
Query: 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG 198
+ D + M+ +L V + + L+ +L +L +
Sbjct: 128 LEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLI--------IVVSGSS 177
Query: 199 KDQKISENFYVRGDGTRAF-YFSNDFLTSLFKENGFDVEE 237
K+ + + R Y ++D LT + G E
Sbjct: 178 GWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYEC 217
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 4e-09
Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 25/200 (12%)
Query: 34 RDKY-EREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFP 92
D+Y + EA + W L+ + R + + +L ++ G VL+V CG G
Sbjct: 19 PDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQH----GCHRVLDVACGTGVDSIM 74
Query: 93 LIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD---LSRQISPS-SID 148
L+ V + D S + + + + + + + L + + D
Sbjct: 75 LVEEGFS--VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132
Query: 149 IVTMVF------VLSAVSPEKMSLVLQNIKKVLKPTGYVLF--RDYAIGDLAQERLTGKD 200
V + S + L L+NI +++P G ++ R+Y L+
Sbjct: 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD------YILSTGC 186
Query: 201 QKISENFYVRGDGTRAFYFS 220
+N Y + D T+ S
Sbjct: 187 APPGKNIYYKSDLTKDITTS 206
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 7e-09
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 79 VLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTH-KDFTETRVSTFVCDLISD 136
VL+VG GAG + L VYA D VN V + +
Sbjct: 41 VLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE--N 98
Query: 137 DLSRQISPSSIDIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDY 186
+ + +++D + M F +S P K L+ +K+V KP Y+ D+
Sbjct: 99 KIP--LPDNTVDFIFMAFTFHELSEPLK---FLEELKRVAKPFAYLAIIDW 144
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 19/169 (11%)
Query: 33 WRDKYEREAKKYWDLFYKRHQDRFFKDRH-YLDKEWGRYFSGAGRKDVLEVGCGAGNTIF 91
W++ + + + + +R ++ Y + + G K +L+ GCG G
Sbjct: 5 WKELTDNNPA-HSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAK-ILDAGCGQGRIGG 62
Query: 92 PLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151
L DV D P ++ +DF E R V DL D +S D++
Sbjct: 63 YLSKQGHDVL--GTDLDPILIDY--AKQDFPEARW--VVGDLSVDQISET----DFDLIV 112
Query: 152 MVF-VLSAVSPEKMSLVLQNIKKVLKPTGYVLF-----RDYAIGDLAQE 194
V+ ++ + L NI + L G + R + GD +
Sbjct: 113 SAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEV 161
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-08
Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 32/220 (14%)
Query: 42 KKYWDLFYKRHQDRFFKDRH--YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD 99
+ W+ ++ + + R + GR L GCG G+ + + A P+
Sbjct: 33 EGGWEKCWEEEITPWDQGRATPLIVHLVDTSSLPLGR--ALVPGCGGGHDVVAM--ASPE 88
Query: 100 VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAV 159
FV D S A+ ++ + + + + + +D+ D++ A+
Sbjct: 89 RFVVGLDISESALA--KANETYGSSPKAEYF-SFVKEDVFTWRPTELFDLIFDYVFFCAI 145
Query: 160 SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYF 219
PE +++ ++LKP G ++ Y I D G +
Sbjct: 146 EPEMRPAWAKSMYELLKPDGELITLMYPITD--------------------HVGGPPYKV 185
Query: 220 SNDFLTSLFKENGFDVEELGLCCKQVENRA-RELVMNRRW 258
+ GF + + R +E + RW
Sbjct: 186 DVSTFEEVLVPIGFKAVSVEENPHAIPTRKGKEKLG--RW 223
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 3e-08
Identities = 24/159 (15%), Positives = 58/159 (36%), Gaps = 18/159 (11%)
Query: 33 WRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAG-NTIF 91
+ + + Y+ Y + VL++GCG G N+++
Sbjct: 87 CTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCK---------VLDLGCGQGRNSLY 137
Query: 92 PLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151
+ V + D + ++ + K+ +ST + D+ + ++ + D +
Sbjct: 138 ---LSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-----QENYDFIV 189
Query: 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190
V ++ E++ +++N+K+ GY L D
Sbjct: 190 STVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTD 228
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 5e-08
Identities = 30/210 (14%), Positives = 63/210 (30%), Gaps = 27/210 (12%)
Query: 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETR 125
E R +++G G G I+ L + F D + + ++
Sbjct: 16 ELTEIIGQFDR-VHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK 74
Query: 126 VS----TFVC---DLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPT 178
FV + + +L SI + + P + +L N+ + K
Sbjct: 75 GGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNR--DILSNVADLAKKE 132
Query: 179 GYVLFR-DYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE 237
+ F Y+ E K + + YF ++ + +GF +
Sbjct: 133 AHFEFVTTYSDSY---EEAEIKKRGLPLLSKA--------YFLSEQYKAELSNSGFRI-- 179
Query: 238 LGLCCKQVENRARELVMNRRWVQAVFCSSG 267
K+++N + N W + +
Sbjct: 180 --DDVKELDNEYVK-QFNSLWAKRLAFGRK 206
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 7e-08
Identities = 27/194 (13%), Positives = 55/194 (28%), Gaps = 27/194 (13%)
Query: 45 WDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAG-NTIFPLIAAYPDVFVY 103
WD + + + + + + G+ +L + G G N F Y V
Sbjct: 2 WDERFSQSEYVYGTEPNDFLVSVANQIPQ-GK--ILCLAEGEGRNACFLASLGYE---VT 55
Query: 104 ACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEK 163
A D S + +++T +L D+ + + + +F +
Sbjct: 56 AVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDI----VADAWEGIVSIFC--HLPSSL 109
Query: 164 MSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF 223
+ + + LKP G + +A L KD +
Sbjct: 110 RQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKD--------------LDLLPKLET 155
Query: 224 LTSLFKENGFDVEE 237
L S + +
Sbjct: 156 LQSELPSLNWLIAN 169
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH--KDFTETRVST 128
F+ A V+++ G G + ++ +P + D P + RV
Sbjct: 177 FARART--VIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEF 233
Query: 129 FVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188
F +L+ + D+V + L + V+ + ++KP G +L +
Sbjct: 234 FEKNLLDARNF---EGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTM 290
Query: 189 GDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE 237
D D S + V + ++ + ++ G V E
Sbjct: 291 NDDRVTPALSAD--FSLHMMVNTNHGEL--HPTPWIAGVVRDAGLAVGE 335
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 26/167 (15%)
Query: 28 GVSPF----WRDKYEREAKKY-----WDLFYKR-HQDRFFKDRHYLDKEWGRYFSGAGRK 77
G+ PF + Y+ ++ W L ++R + S
Sbjct: 1 GIDPFTMVSVDNTYQSLERELANDDPWRLDDNPFERERHTQLLRLS-------LSSGAVS 53
Query: 78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD 137
+ LE+GC AG L + D PRA+ + +S D++
Sbjct: 54 NGLEIGCAAGAFTEKLAPHCKR--LTVIDVMPRAIGRACQRTK-RWSHISWAATDILQFS 110
Query: 138 LSRQISPSSIDIVTMVFVLSAV-SPEKMSLVLQNIKKVLKPTGYVLF 183
+ D++ + VL + +M + N+ K+L P G+++F
Sbjct: 111 TAEL-----FDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 1e-07
Identities = 16/124 (12%), Positives = 43/124 (34%), Gaps = 7/124 (5%)
Query: 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH--KDFTETRV 126
+ + V+++GCG GN + L+ + D S R++ + +
Sbjct: 23 AALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQ 82
Query: 127 STFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF--- 183
+ + + D T++ V+ + ++ + + + +P V+
Sbjct: 83 WERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQP-KIVIVTTP 141
Query: 184 -RDY 186
+Y
Sbjct: 142 NIEY 145
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 2e-07
Identities = 77/542 (14%), Positives = 151/542 (27%), Gaps = 189/542 (34%)
Query: 61 HYLDKEWG--RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDF-----SPRAV- 112
H++D E G +Y KD+L V + D FV D P+++
Sbjct: 5 HHMDFETGEHQY----QYKDILSV--------------FEDAFVDNFDCKDVQDMPKSIL 46
Query: 113 ------NLVMTHKDFTETR-------------VSTFVCDLISDD---LSRQIS-----PS 145
+++M+ + T V FV +++ + L I PS
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 146 SIDI-----------VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYV-LFRDYAIGD--L 191
+ VF VS + L L+ L+P V + G +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 192 AQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARE 251
A + K+ + F+ + L C N
Sbjct: 167 ALDVC--LSYKVQCKM-----DFKIFWLN-----------------LKNC-----NSPET 197
Query: 252 LV--MNRRWVQAV--FCSSGGATSS----SEEASVRVDIF-------NQAIIEPDVAANT 296
++ + + Q + S +S+ + N ++ +V
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---- 253
Query: 297 LKEPMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTC---RST 353
+++ + F LS I + R + + + H S
Sbjct: 254 -----QNAKA-------WNAFNLSC-----KILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 354 GLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALD 413
L E L+ K L+ D
Sbjct: 297 TLTPDEVKSLLL-------------KYLDCRPQ--------------------------D 317
Query: 414 LLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-PEAILP 472
L + +T N P +I + + + K N + I+ + ++ + P
Sbjct: 318 LPREVLTTN---PRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 473 LFATAKELTASSNKSLREDQQ-PAFILCHIFRQVDEPSMLSAATQC-GFRLVDKWPSKNS 530
+F L+ P +L I+ V + ++ + + LV+K P +++
Sbjct: 374 MF---DRLSV-----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 531 AS 532
S
Sbjct: 426 IS 427
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 6e-06
Identities = 47/403 (11%), Positives = 107/403 (26%), Gaps = 122/403 (30%)
Query: 9 AGIGK-----EEAPKLQIYPTPNTGVSPFW-----RDKYEREAKKYWDLFY--------- 49
G GK + ++ + + FW + E + L Y
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 50 --------------KRHQDRFFKDRHY------LDKEWG----RYFSGAGR-------KD 78
+ R K + Y L F+ + + K
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 79 VLEVGCGAGNTIFP---------------LIAAYPDVFVY-----ACDFSPRAVNLV--- 115
V + A T L+ Y D +PR ++++
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 116 -------------MTHKDFTETRVSTFVCDLISDDLSRQ-----ISPSSIDIVTMVFVL- 156
+ T + + + L + + + P S I T++ L
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 157 -SAVSPEKMSLVLQN-IKKVLKPTGYVLFRD-----YAIGDLAQE-RLTGKDQKISENFY 208
V + +V+ K L + + +I + E ++ +++
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSL------VEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 209 VRGDGTRAFYFSNDFLTSLFKENGFDVEELG---LCCKQVENRA--RELVMNRRWVQAVF 263
V + S+D + + + +G + E R + ++ R+++
Sbjct: 450 VDHYNIPKTFDSDDLIPP--YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 264 CSSG---GATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMND 303
A+ S ++ + I + D + +N
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDND---PKYERLVNA 547
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 24/165 (14%), Positives = 46/165 (27%), Gaps = 12/165 (7%)
Query: 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH--KDFTETRVST 128
+ VL++ G + P+ ++ D+ + + + +R T
Sbjct: 161 ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDW-ASVLEVAKENARIQGVASRYHT 219
Query: 129 FVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188
D + D+V + L +L+ IK L G V+ D+
Sbjct: 220 IAGSAFEVDY-----GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP 274
Query: 189 GDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233
S A ++ S+F GF
Sbjct: 275 NSDRITPPDAAA--FSLVMLATTPNGDA--YTFAEYESMFSNAGF 315
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 4e-07
Identities = 32/162 (19%), Positives = 53/162 (32%), Gaps = 23/162 (14%)
Query: 42 KKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD--VLEVGCGAGNTIFPLIAA-YP 98
+YWD Y+ D D + R + +L +GCG + L +P
Sbjct: 7 VEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFP 66
Query: 99 DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSA 158
+ V + D+S V M ++ D+ D +S D+V L A
Sbjct: 67 N--VTSVDYSSVVVAA-MQACYAHVPQLRWETMDVRKLDF----PSASFDVVLEKGTLDA 119
Query: 159 VSPEKMSL-------------VLQNIKKVLKPTGYVLFRDYA 187
+ + VL + +VL P G + A
Sbjct: 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 4e-07
Identities = 41/248 (16%), Positives = 77/248 (31%), Gaps = 46/248 (18%)
Query: 30 SPFWRDKYEREAKKYWDL---FYKRHQDRFFKDRHYLDKEWGRYF----------SGAGR 76
SP + ++ + + Y ++R + R R R
Sbjct: 5 SPLKTFRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKR 64
Query: 77 KD-VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS 135
D VL++GCG G + A Y D + ++N + V
Sbjct: 65 GDSVLDLGCGKGGDLLKYERAGIG-EYYGVDIAEVSINDA--RVRARNMKRRFKVFFRAQ 121
Query: 136 DDLSRQISPS-SIDIVTMVFVL--SAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLA 192
D R + D+++ F + + E + + +NI + L+P GY + D+
Sbjct: 122 DSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM-TVPSRDVI 180
Query: 193 QERLTGKDQKISENFY-VRGDGTRAFYFSN----------------------DFLTSLFK 229
ER K ++S +FY + + + + FK
Sbjct: 181 LERY--KQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFK 238
Query: 230 ENGFDVEE 237
G + E
Sbjct: 239 RLGLSLVE 246
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 4e-07
Identities = 31/206 (15%), Positives = 59/206 (28%), Gaps = 20/206 (9%)
Query: 45 WDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVY 103
+ Q R R + + W G K +LE+GCG G+ L V
Sbjct: 17 PTANARTIQRRQTAHRLAIAEAWQ---VKPGEK-ILEIGCGQGDLSAVLADQVGSSGHVT 72
Query: 104 ACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS----DDLSRQISP---SSIDIVTMVFVL 156
D + +T ++ + D ++ +LS + P D V + L
Sbjct: 73 GIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSL 132
Query: 157 SAV-SPEKMSLVLQNIKKVLKPTGYVLFRDYAI----GDLAQERLTGKDQKISENFYVRG 211
S + K + +V ++++ D Q +
Sbjct: 133 WYFASANAL---ALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189
Query: 212 DGTRAFYFSNDFLTSLFKENGFDVEE 237
+ D L + +N +
Sbjct: 190 VANIRTLITPDTLAQIAHDNTWTYTA 215
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 5e-07
Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 34/195 (17%)
Query: 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL-----------VMTHKDFTET 124
++ VL + G G + + A D A+ + T +
Sbjct: 49 KRKVLAIDFGNGADLEKYFYGEIA-LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDY 107
Query: 125 RVSTFVCDLISDDLSRQISPSSIDIVTMVFVL-SAVSPEKMSLVLQNIKKVLKPTGYVLF 183
T D + +I+ F + + P + V+ N+ ++ G VL
Sbjct: 108 IQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLI 167
Query: 184 RDY---AIGDLAQERLTG--KDQKISENFYVR---GDGTRAFYFSN-------------D 222
+ L ++ K+ SEN+ D Y + +
Sbjct: 168 TTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMTEYIIKKN 227
Query: 223 FLTSLFKENGFDVEE 237
+ +F E GF + +
Sbjct: 228 DIVRVFNEYGFVLVD 242
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 7e-07
Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 22/167 (13%)
Query: 79 VLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVS--------TF 129
VL++GCG G ++ V D + + + ++ + F
Sbjct: 87 VLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRF 146
Query: 130 VCDLI---SDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186
+ I + + SS+DIV V + K++ + + I +VL+ G + F D
Sbjct: 147 LKGFIENLATAEPEGVPDSSVDIVISNCVCNLS-TNKLA-LFKEIHRVLRDGGELYFSDV 204
Query: 187 AIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233
+ ++ + G+ + DF L E GF
Sbjct: 205 Y-------ADRRLSEAAQQDPILYGECLGGALYLEDFR-RLVAEAGF 243
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 9e-07
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 18/160 (11%)
Query: 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
++++GCG G + +V D S + + +T ++ DL D
Sbjct: 45 LRIVDLGCGFGWFCR-WAHEHGASYVLGLDLSEKMLARARAAGP--DTGITYERADL--D 99
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL 196
L + S D+ L V E ++ + + + + L P G+ +F +A R
Sbjct: 100 KL--HLPQDSFDLAYSSLALHYV--EDVARLFRTVHQALSPGGHFVFSTEHPIYMAPAR- 154
Query: 197 TGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVE 236
+ + +G R + + K +
Sbjct: 155 --------PGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG 186
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATD 406
V G ++++LGCG G C A V+ D
Sbjct: 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLD 73
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 9e-07
Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 23/207 (11%)
Query: 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVF--VYACDFSPRAVNL---VMTHKDFTETR 125
+ RK +++VGCG G + A F + D S + + T
Sbjct: 32 YHDGERKLLVDVGCGPGTATLQM-AQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN 90
Query: 126 VSTFVCD--LISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL- 182
VS + + + ID++T V EK ++ L+ G +
Sbjct: 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEK---FQRSAYANLRKDGTIAI 147
Query: 183 -------FRDYAIGDLAQERLTGKDQKISENFYVRGDG-TRAFYFSNDFLTSLFKE---N 231
F DY D + Q + + G R + LF + +
Sbjct: 148 WGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLDPELFHDIQVS 207
Query: 232 GFDVEELGLCCKQVENRARELVMNRRW 258
F E++ K ++ + L++ ++
Sbjct: 208 YFCAEDVRDKVKLHQHTKKPLLIRKQV 234
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 20/161 (12%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL--VMTHKDFTETRVSTFVCDLISD 136
+ ++GCG G +A Y + D P + + K RV + D
Sbjct: 50 IADIGCGTGGQTL-FLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM--D 106
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL 196
+L +D++ + + E+ + K LK G++ + +
Sbjct: 107 NLP--FQNEELDLIWSEGAIYNIGFER---GMNEWSKYLKKGGFIAVSEAS-------WF 154
Query: 197 TGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE 237
T + E+F++ + G+
Sbjct: 155 TSERPAEIEDFWMDAYPE---ISVIPTCIDKMERAGYTPTA 192
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 18/161 (11%)
Query: 40 EAKKYWDLFYKRHQDRFFKDRHYL----DKEWGRYFSGAGR----KDVLEVGCGAGNTIF 91
K F FF + + + S + ++GCG G
Sbjct: 3 NENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTM 62
Query: 92 PLIAAYPDVFVYACDFSPRAVNLV--MTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149
++A + V DF +++ + + RV+ V + DDL +D+
Sbjct: 63 -VLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM--DDLP--FRNEELDL 117
Query: 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190
+ + + E+ L +K LK GY+ + +
Sbjct: 118 IWSEGAIYNIGFERG---LNEWRKYLKKGGYLAVSECSWFT 155
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 2e-06
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 17/119 (14%)
Query: 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
VL++GCG G A P++ + D S A+ +V+ V
Sbjct: 87 TAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR----YPQVTFCVASSHRL 142
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQER 195
S +S+D + ++ + + +V+KP G+V+ L + +
Sbjct: 143 PF----SDTSMDAIIRIYAPCK---------AEELARVVKPGGWVITATPGPRHLMELK 188
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 35/214 (16%), Positives = 60/214 (28%), Gaps = 45/214 (21%)
Query: 35 DKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLI 94
D + A+ Y + +Y + + G +LEVG G G +
Sbjct: 1 DPFASLAEAY-EAWYGTPLGAYVIAEEERALKGLL---PPGES-LLEVGAGTGY----WL 51
Query: 95 AAYPDVFVYACDFSP--------RAVNLVMTHKDFTETRVSTFVCDL-ISDDLSRQISPS 145
P + S RA L +
Sbjct: 52 RRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGE---------ALPFPGE-------- 94
Query: 146 SIDIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKIS 204
S D+V + L V E+ VL ++VL+P G ++ +G L +
Sbjct: 95 SFDVVLLFTTLEFVEDVER---VLLEARRVLRPGGALV-----VGVLEALSPWAALYRRL 146
Query: 205 ENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 238
V F + + L +L + E +
Sbjct: 147 GEKGVLPWAQARFL-AREDLKALLGPPEAEGEAV 179
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 4e-06
Identities = 14/115 (12%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDV-FVYACDFSPRAVNLVMTH--KDFTETRVSTF 129
+ +++ GCG+G+ + L+ + + D SP+ + + +
Sbjct: 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778
Query: 130 VCDLISDDLS-RQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183
L + +DI T + V+ + ++ + + + P ++
Sbjct: 779 SATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP-KLLIV 832
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 4e-06
Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 24/184 (13%)
Query: 61 HYLDKEWGRYFSGAGRKD-VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH- 118
H+ + + VL++G GAG+T + D + V + +
Sbjct: 6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQE--CIGVDATKEMVEVASSFA 63
Query: 119 KDFTETRVSTFVCD---LISDDLSRQISPSSIDIVTMVFVLSAVS-PEKMSLVLQNIKKV 174
++ V L D S DI+T + S K ++ + +V
Sbjct: 64 QEKGVENVRFQQGTAESLPFPD-------DSFDIITCRYAAHHFSDVRK---AVREVARV 113
Query: 175 LKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFD 234
LK G L D+ + + + D + S ++F N
Sbjct: 114 LKQDGRFLLVDHYAPEDPVLD------EFVNHLNRLRDPSHVRESSLSEWQAMFSANQLA 167
Query: 235 VEEL 238
+++
Sbjct: 168 YQDI 171
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 6e-06
Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 16/182 (8%)
Query: 30 SPFWRDKYEREAKKY----WDLFYKRHQDRFFKDR-HYLDKEWGRYFSGAGRKDVLEVGC 84
SP ++++ +K+ + +Y R L EW F G +DVL++GC
Sbjct: 2 SPLPAAGFKKQQRKFQYGNYCKYYGYRNPSCEDGRLRVLKPEW---FRG---RDVLDLGC 55
Query: 85 GAGNTIFPLIAAYPDVFVYACDFSPRAV-----NLVMTHKDFTETRVSTFVCDLISDDLS 139
G+ + + + D R + N+ + T D ++
Sbjct: 56 NVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEE 115
Query: 140 RQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGK 199
+ S + L + P V + D
Sbjct: 116 GTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQT 175
Query: 200 DQ 201
+
Sbjct: 176 PE 177
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 7e-06
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 323 EDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLE 382
D +++E LR + K + S G+ + +L N + +L+
Sbjct: 9 SDVKIVEDILRGKKLKFKTDS----------GVFSYGKVDKGTKILVENVVVDKDDDILD 58
Query: 383 LGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 432
LGCG G I + A D + A+ L +N+ N + +++
Sbjct: 59 LGCGYGVI-GIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVV 107
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 8e-06
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 10/108 (9%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
+ +G G L++ + V + P L + E V + D+
Sbjct: 126 AVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELS---RKVIEGLGVDGVNVITGDET 182
Query: 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186
I D++ +++A++ K V +NI + + +++R Y
Sbjct: 183 V--IDGLEFDVL----MVAALAEPKRR-VFRNIHRYVDTETRIIYRTY 223
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 33/205 (16%), Positives = 59/205 (28%), Gaps = 29/205 (14%)
Query: 44 YWDLFYKRHQDRFFKDR-HYLDKEWGRYFSGAGRK---DVLEVGCGAGNTIFPLIAAYPD 99
D + H + + H + + A K +VL+V G G+
Sbjct: 2 GSDKIHHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK 61
Query: 100 VFVYACDFSPRAVNLVMTH-KDFTETRVSTFVCDL----ISDDLSRQISPSSIDIVTMVF 154
V A D + + + + +V D +D+ IVT
Sbjct: 62 --VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE--------RFHIVTCRI 111
Query: 155 VLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDG 213
P + +VLK G +L D + + D
Sbjct: 112 AAHHFPNPAS---FVSEAYRVLKKGGQLLLVDNSAPENDAFD------VFYNYVEKERDY 162
Query: 214 TRAFYFSNDFLTSLFKENGFDVEEL 238
+ + + +E GF++EEL
Sbjct: 163 SHHRAWKKSDWLKMLEEAGFELEEL 187
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 1/98 (1%)
Query: 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADL-VVATDGDSIALDLLAQNVTANL 423
A +LA ++ +LG G G VAA V + + +++
Sbjct: 25 AMLLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPD 84
Query: 424 KPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGT 461
F A++ + R +E F ++
Sbjct: 85 NAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMN 122
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 9/116 (7%)
Query: 79 VLEVGCGAGN-TIFPLIAAYPDVFVYACDFSPRAVNLVMTH--KDFTETRVSTFVCDLIS 135
V++ CG GN T F + V+ D +A+ RV T + D
Sbjct: 26 VVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV-TLIKDGHQ 84
Query: 136 DDLSRQISPSSIDIVTMVFVLSA-----VSPEKMSLVLQNIKKVLKPTGYVLFRDY 186
+ P + + ++ S PE L ++L G + Y
Sbjct: 85 NMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 14/159 (8%)
Query: 24 TPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVG 83
V K E + W+ + K + + +L +G
Sbjct: 31 VKGKKVYDEKIIKIGDEEYRIWNPNKSKLAAAIIKGLKVMPIKRD--------SKILYLG 82
Query: 84 CGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143
AG T + VYA +++PR + + + + D I
Sbjct: 83 ASAGTTPSHVADIADKGIVYAIEYAPRIMR-ELLDACAERENIIPILGDANKPQEYANIV 141
Query: 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182
+D++ P + ++++N K LK GY +
Sbjct: 142 E-KVDVIYEDVAQ----PNQAEILIKNAKWFLKKGGYGM 175
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 15/160 (9%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
VL++G G G I + D VN + + ++ F +D L
Sbjct: 59 VLDIGSGLGGGCM-YINEKYGAHTHGIDICSNIVN-MANERVSGNNKI-IFEA---NDIL 112
Query: 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG 198
+++ ++ D++ + A+S E + + Q K LKPTG +L DY +
Sbjct: 113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE-------K 165
Query: 199 KDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 238
++ YV+ + + + F
Sbjct: 166 ENWDDEFKEYVKQRK--YTLITVEEYADILTACNFKNVVS 203
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Length = 253 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 3e-05
Identities = 21/164 (12%), Positives = 51/164 (31%), Gaps = 10/164 (6%)
Query: 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKD 120
LD + FS + VL++ CG + PL V+ CD +++
Sbjct: 92 ELDTLYDFIFSAETPRRVLDIACG----LNPLALYERGIASVWGCDIHQGLGDVITPFAR 147
Query: 121 FTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGY 180
+ + + D++ + D+ + +L + E+ + ++ + P
Sbjct: 148 EKDWDFTFALQDVLCAPP-----AEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMA 202
Query: 181 VLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFL 224
V F ++G + + + +
Sbjct: 203 VSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIGTELI 246
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 37/231 (16%), Positives = 60/231 (25%), Gaps = 43/231 (18%)
Query: 34 RDKYEREAKKYWDL-----FYKRH-QDRFFKDRHYLDKEWGRYFSGAGR----------- 76
+ A+ Y+D FY Y + A
Sbjct: 16 SKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELA 75
Query: 77 --------KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPR--AVNLVMTHKDFTETRV 126
L++G G G + V + + +P N ++ +
Sbjct: 76 MTGVLQRQAKGLDLGAGYGGAAR-FLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNI 134
Query: 127 STFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186
+ L +S D + P+K V Q +VLKP G + D
Sbjct: 135 T-VKYG---SFLEIPCEDNSYDFIWSQDAFLHS-PDK-LKVFQECARVLKPRGVMAITDP 188
Query: 187 AIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE 237
D + Q I + + G+ Y SL KE G
Sbjct: 189 MKEDGIDKSSI---QPILDRIKLHDMGSLGLYR------SLAKECGLVTLR 230
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 3e-05
Identities = 21/186 (11%), Positives = 57/186 (30%), Gaps = 31/186 (16%)
Query: 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTAN 422
L+A + P K+++L G G I +++ + +V + D+ ++V N
Sbjct: 39 LLAK-FSYLPI--RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN 95
Query: 423 LKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGT-----DVSYIPEAILPLFATA 477
+ ++E D + E +++ + F A
Sbjct: 96 --------QLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIA 147
Query: 478 --------KELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF---RLVDKWP 526
++ + L++ H ++ + ++ + R+ P
Sbjct: 148 RHEVMCTLEDTIRVAASLLKQ--GGKANFVHRPERLLD--IIDIMRKYRLEPKRIQFVHP 203
Query: 527 SKNSAS 532
+ +
Sbjct: 204 RSDREA 209
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADL-VVATDGDSIALDLLAQNVTAN 422
+ +L T KVL++GCG G + A S + + D + A++ + AN
Sbjct: 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN 243
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 20/194 (10%), Positives = 46/194 (23%), Gaps = 40/194 (20%)
Query: 374 IVAGKKVLELGCGCGGI-CSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 432
+ G ++L++G + ++ G D +A + + +NV+ +
Sbjct: 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH---------- 68
Query: 433 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQ 492
G I+ G D ++ + L
Sbjct: 69 ------GLTSKIDVRL---ANGLSAFEEADNIDTITICGMGGRLIADILNNDIDKL--QH 117
Query: 493 QPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW---------------PSKNSASPSESI 537
+L E + F +V + + + E
Sbjct: 118 VKTLVLQ---PNNREDDLRKWLAANDFEIVAEDILTENDKRYEILVVKHGHMNLTAKELR 174
Query: 538 ISSWFSENGHEVYL 551
+ N V+
Sbjct: 175 FGPFLLSNNTTVFK 188
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 4e-05
Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 20/194 (10%)
Query: 54 DRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVF-VYACDFSPRAV 112
D ++ D Y+ + +++ GCG G L+ P+ D +
Sbjct: 2 DLYYND-DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL 60
Query: 113 NLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVS-PEKMSLVLQNI 171
D +L DI L ++ PE +LQ +
Sbjct: 61 AEARELFRLLPYDSEFLEGDATEIEL-----NDKYDIAICHAFLLHMTTPET---MLQKM 112
Query: 172 KKVLKPTGYVLFRDYA-IGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF------- 223
+K G ++ + I ++A L G+ Q V + N
Sbjct: 113 IHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMK 172
Query: 224 LTSLFKENGF-DVE 236
+ E G ++E
Sbjct: 173 IPIYLSELGVKNIE 186
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 23/152 (15%)
Query: 41 AKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDV 100
+ YW+ + + +L++GCG+G L A
Sbjct: 2 PESYWEKV-----SGKNIPSSLDLYPIIHNYLQEDDE-ILDIGCGSGKISLEL--ASKGY 53
Query: 101 FVYACDFSP--------RAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152
V D + A + + K T + V + + LS SS D M
Sbjct: 54 SVTGIDINSEAIRLAETAARSPGLNQK--TGGKAEFKVEN--ASSLS--FHDSSFDFAVM 107
Query: 153 VFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLF 183
L++V P++ S +++ + +VLKP Y+
Sbjct: 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYL 139
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-05
Identities = 20/159 (12%), Positives = 38/159 (23%), Gaps = 25/159 (15%)
Query: 44 YWDLFYKRHQDRFFKDRH--YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVF 101
W + F +++ L K + G V CG + A
Sbjct: 35 DWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWF--ADRGHT 92
Query: 102 VYACDFSPRAVNLVMT------------------HKDFTETRVSTFVCDLISDDLSRQIS 143
V + S + + +S + C + +
Sbjct: 93 VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANI-- 150
Query: 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182
D + L A++P I +L+ L
Sbjct: 151 -GKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYL 188
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 35/187 (18%), Positives = 59/187 (31%), Gaps = 23/187 (12%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPR--AVNLVMTHKDFTETRVSTFVCDLISD 136
VL+VGCG G +A DV V S RV TF +D
Sbjct: 65 VLDVGCGIGKPAV-RLATARDVRVTGISISRPQVNQANARATAAGLANRV-TFSY---AD 119
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL 196
+ +S D V + L + P++ L+ + +VL+P G V D+ + +
Sbjct: 120 AMDLPFEDASFDAVWALESLHHM-PDR-GRALREMARVLRPGGTVAIADFVLLAPVEGAK 177
Query: 197 TGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMN- 255
V G Y S ++ V + + + +
Sbjct: 178 KEAVDAFRAGGGVLSLGGIDEY------ESDVRQAELVVTS-------TVDISAQARPSL 224
Query: 256 RRWVQAV 262
+ +A
Sbjct: 225 VKTAEAF 231
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADL-VVATDGDSIALDLLAQNVTAN 422
A ++ ++++LGCG G I + + VV D +A+ NV N
Sbjct: 210 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN 269
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 16/166 (9%)
Query: 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH--KDFTETRVST 128
G + +++VG G G+ ++ +P++ + P A++LV + + R+
Sbjct: 188 LDGVKK--MIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRG 244
Query: 129 FVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188
D+ + P + D V +L + + + +++ + ++ G +L D I
Sbjct: 245 IAVDIYKESY-----PEA-DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 298
Query: 189 GDLAQERLTGKDQKI-SENFYVRGDGTRAFYFSNDFLTSLFKENGF 233
D I G + + + G+
Sbjct: 299 DDPENPNFDYLSHYILGAGMPFSVLGFK----EQARYKEILESLGY 340
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQN 418
+A+ + + + G+ V++ G G G + A+ V A D D A++ +N
Sbjct: 36 TAAYFLIEIYNDG--NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRN 93
Query: 419 VTAN 422
Sbjct: 94 CGGV 97
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 22/151 (14%), Positives = 42/151 (27%), Gaps = 20/151 (13%)
Query: 33 WRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFP 92
D+ RE Y + + + W + VLE GCG G
Sbjct: 10 SYDRLARELGGYRHPWARVLSGPDPELTF---DLWLSRLLTPQTR-VLEAGCGHGPDAAR 65
Query: 93 LIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152
A DFSP + L + + +L + ++
Sbjct: 66 FGPQAAR--WAAYDFSPELLKLARAN-----APHADVYEWNGKGELP-AGLGAPFGLIVS 117
Query: 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183
++ V+ + ++ P + L+
Sbjct: 118 RRGPTS--------VILRLPELAAPDAHFLY 140
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Length = 281 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 5/146 (3%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
+ ++ CG P + + A D R V V T V DL+ D
Sbjct: 136 LRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLED-- 193
Query: 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG 198
D+ ++ L + ++ + I V P V F ++G ++
Sbjct: 194 ---RLDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQN 250
Query: 199 KDQKISENFYVRGDGTRAFYFSNDFL 224
Q R + N+ +
Sbjct: 251 YSQSFESQARERSCRIQRLEIGNELI 276
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 35/212 (16%), Positives = 59/212 (27%), Gaps = 23/212 (10%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD-VLEVGCGAGNTIFP 92
R A Y D R + + + G + LE+G G G P
Sbjct: 2 SSALLRAAYAY-D----RLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALP 56
Query: 93 LIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP---SSIDI 149
LIA A D + + + +V D + + P S+
Sbjct: 57 LIARGYR--YIALDADAAMLEVFRQKIAGVDRKVQVVQAD--ARAI-----PLPDESVHG 107
Query: 150 VTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFY 208
V +V + V K VL +VLKP G +L + L + + +
Sbjct: 108 VIVVHLWHLVPDWPK---VLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEG 164
Query: 209 VRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240
+ + + G +
Sbjct: 165 FPVERGLHAK-RLKEVEEALRRLGLKPRTREV 195
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 35/163 (21%), Positives = 52/163 (31%), Gaps = 26/163 (15%)
Query: 42 KKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVF 101
K +WD F + D + +W F G +EVG G G I + PD+
Sbjct: 6 KPWWDDFLAENADIAISNPADYKGKWNTVF-GNDNPIHIEVGTGKGQFISGMAKQNPDIN 64
Query: 102 VYACD-FSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVS 160
+ F V V KD V + D L+ P + V + F
Sbjct: 65 YIGIELFKSVIVTAVQKVKDSEAQNVK-LLNIDA-DTLTDVFEPGEVKRVYLNF------ 116
Query: 161 P--------EKMSLV----LQNIKKVLKPTGYVLF----RDYA 187
EK L L+ ++V+ G + F R
Sbjct: 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLF 159
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 3e-04
Identities = 18/154 (11%), Positives = 50/154 (32%), Gaps = 8/154 (5%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
+L+ GCG + +A D + + + +T + + SD
Sbjct: 53 ILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-- 110
Query: 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG 198
+ + D+V ++ +L + ++ +L ++ + F ++ +
Sbjct: 111 ---VYKGTYDVVFLLKMLPVL-KQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEEN 166
Query: 199 KDQKISENFYVRGDGTRAFYFSND--FLTSLFKE 230
+ N+ ++TS F++
Sbjct: 167 YQLWFESFTKGWIKILDSKVIGNELVYITSGFQK 200
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 29/206 (14%)
Query: 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACD-FSPRAVNLVMTHKD 120
+ D E+ + S VL+VG G G + + P V A D R +
Sbjct: 15 FSDAEFEQLRSQYDDV-VLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAA 73
Query: 121 FTETRVSTFVCDLISD--DLSRQISPSSIDIV----TMVFVLSAVSPEKMSLVLQNIKKV 174
+ L + L + ++ +++ + SPE +L+ + V
Sbjct: 74 KPAKGGLPNLLYLWATAERLPPLSGVGELHVLMPWGSLLRGVLGSSPE----MLRGMAAV 129
Query: 175 LKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFD 234
+P L +L R + + V ++++L + E G+
Sbjct: 130 CRPGASFLVAL----NLHAWRPSVPE--------VGEHPEPTPDSADEWLAPRYAEAGWK 177
Query: 235 VEELGLCCKQVENRARELVMNRRWVQ 260
+ + C+ +E + W +
Sbjct: 178 LAD----CRYLEPEEVA-GLETSWTR 198
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 79 VLEVGCGAGNTIFPLI-AAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD 137
+L +G +G T + P +Y +F+PR + + + + D +
Sbjct: 81 ILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMR-DLLTVVRDRRNIFPILGDARFPE 139
Query: 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183
R + +D + PE+ ++V++N + L+ GY+L
Sbjct: 140 KYRHLVE-GVDGLYADVAQ----PEQAAIVVRNARFFLRDGGYMLM 180
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 28/198 (14%), Positives = 52/198 (26%), Gaps = 54/198 (27%)
Query: 377 GKKVLELGCGCGGI-CSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435
G +L++G + +V G +A + +NV A+
Sbjct: 16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH------------- 62
Query: 436 LEWGNRDHIEAIKEENNEGFEVILGTD-VSYI------PEAILPLFATAKELTASSNKSL 488
G ++ I+ G TD VS I I +
Sbjct: 63 ---GLKEKIQVRL---ANGLAAFEETDQVSVITIAGMGGRLIARILEEGLG--------- 107
Query: 489 REDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW---------------PSKNSASP 533
+ IL E + GF++V + + S
Sbjct: 108 KLANVERLILQ---PNNREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAGQMKLSA 164
Query: 534 SESIISSWFSENGHEVYL 551
S+ + S+ V++
Sbjct: 165 SDVRFGPFLSKEVSPVFV 182
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 4e-04
Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 25/151 (16%)
Query: 374 IVAGKKVLELGCGCGGI-CSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 432
I +++ ++G + C V +A +A + + V ++ L + I
Sbjct: 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS----GLTEQI 74
Query: 433 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQ 492
R G + I++++ VI G I + +
Sbjct: 75 DVRKGNG----LAVIEKKDAIDTIVIAGM----GGTLIRTILEEGAA---------KLAG 117
Query: 493 QPAFILCHIFRQVDEPSMLSAATQCGFRLVD 523
IL + + + Q + +
Sbjct: 118 VTKLILQ---PNIAAWQLREWSEQNNWLITS 145
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 4e-04
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 328 IEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLAR-NPTIVAGKKVLELGCG 386
+ + L + S L+ A+ R P V G++VL+LG G
Sbjct: 189 FSARILGAEYTFHHLPGVFSAGKVDPA-----SLLLLEALQERLGPEGVRGRQVLDLGAG 243
Query: 387 CGGICSMVAAGSADLVVATDGDSIALDLLAQNVTAN 422
G + +A A+ VV + D ++ L + + AN
Sbjct: 244 YGALTLPLARMGAE-VVGVEDDLASVLSLQKGLEAN 278
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 23/151 (15%), Positives = 52/151 (34%), Gaps = 29/151 (19%)
Query: 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 433
+ V+++ G G +A +A + A D + A++LL +N+ N
Sbjct: 193 VSLNDVVVDMFAGVGPF--SIACKNAKKIYAIDINPHAIELLKKNIKLN----------- 239
Query: 434 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQ 493
I I ++ EV + + I+ L A + + + E
Sbjct: 240 -----KLEHKIIPI---LSDVREVDVKGNR-----VIMNLPKFAHKFIDKALDIVEEG-- 284
Query: 494 PAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524
I + + + ++ +C +++K
Sbjct: 285 -GVIHYYTIGKDFDKAIKLFEKKCDCEVLEK 314
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
+ ++G G G L +FVYA + S VM + +V F +++L
Sbjct: 38 IADIGAGTGGYSVALAN--QGLFVYAVEPSI-----VMRQQAVVHPQVEWFTGY--AENL 88
Query: 139 SRQISPSSIDIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLF 183
+ + S+D V + + S EK Q ++++++ VL
Sbjct: 89 A--LPDKSVDGVISILAIHHFSHLEK---SFQEMQRIIRDGTIVLL 129
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 36/214 (16%), Positives = 70/214 (32%), Gaps = 30/214 (14%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD--VLEVGCGAGNTIF 91
+ Y+R A+ Y D Y+ + + + G + + VL++G G G
Sbjct: 18 WEFYDRIARAY-DSMYETPKWKLYHRL------IGSFLEEYLKNPCRVLDLGGGTGKWSL 70
Query: 92 PLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151
L + V D S + + E V V + + + V
Sbjct: 71 FLQERGFE--VVLVDPSKEMLEVAR------EKGVKNVVE---AKAEDLPFPSGAFEAVL 119
Query: 152 MV-FVLSAVS-PEKMSLVLQNIKKVLKPTGYVLF----RDYAIGDLAQERLTGKDQKISE 205
+ VLS V +K I++VL P G ++ + + ++ + + +
Sbjct: 120 ALGDVLSYVENKDK---AFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLK 176
Query: 206 NFYVRGDGTRAFYFSNDFL-TSLFKENGFDVEEL 238
T + S F L GF+ ++
Sbjct: 177 TQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDI 210
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 21/161 (13%), Positives = 40/161 (24%), Gaps = 15/161 (9%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
++GCG GN+ L Y + D + + + DL
Sbjct: 37 GYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLE---------KAADRLPNTNFGKADL 87
Query: 139 SRQISPSSIDIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT 197
+ D++ V V VL + L+ G + +
Sbjct: 88 ATWKPAQKADLLYANAVFQWVPDHLA---VLSQLMDQLESGGVLAVQMPDNLQEPTHIAM 144
Query: 198 G--KDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVE 236
D ++ + G R + V+
Sbjct: 145 HETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSRVD 185
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 35/202 (17%), Positives = 64/202 (31%), Gaps = 24/202 (11%)
Query: 40 EAKKYWD-LFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP 98
AK +WD Y+ ++ L G +L++GCG G + +
Sbjct: 25 TAKNFWDATLYQDKHSFVWQYGEDL---LQLLNPQPGEF-ILDLGCGTGQLTEKIAQSGA 80
Query: 99 DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS-SIDIVTMVFVLS 157
+ V D + + + + V D R +D V +L
Sbjct: 81 E--VLGTDNAATMIEKARQNYP----HLHFDVADA------RNFRVDKPLDAVFSNAMLH 128
Query: 158 AVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRA 216
V PE + +I + LK G + G++ L +
Sbjct: 129 WVKEPEA---AIASIHQALKSGGRFVAEFGGKGNIK-YILEALYNALETLGIHNPQALNP 184
Query: 217 FYFSN-DFLTSLFKENGFDVEE 237
+YF + ++ ++ GFDV
Sbjct: 185 WYFPSIGEYVNILEKQGFDVTY 206
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 8e-04
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNV 419
S + ++ +R I G KV++L G G + A + + + N+
Sbjct: 79 SGAVTSSYKSRF--IREGTKVVDLTGGLGID-FIALMSKASQGIYIERNDETAVAARHNI 135
Query: 420 TANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 458
K + D E + + I
Sbjct: 136 PL-------LLNEGKDVNILTGDFKEYLPLIKTFHPDYI 167
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 564 | |||
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.85 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.84 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.84 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.83 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.83 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.82 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.82 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.82 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.8 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.8 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.8 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.79 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.78 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.78 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.78 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.78 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.78 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.78 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.78 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.77 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.77 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.77 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.77 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.76 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.76 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.76 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.76 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.75 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.75 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.75 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.74 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.74 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.74 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.74 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.74 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.73 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.73 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.73 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.73 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.73 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.73 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.72 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.72 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.72 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.72 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.72 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.72 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.72 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.71 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.71 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.71 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.71 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.7 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.7 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.7 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.69 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.69 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.69 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.69 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.69 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.69 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.69 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.69 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.68 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.68 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.68 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.67 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.67 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.67 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.67 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.66 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.66 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.66 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.66 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.66 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.64 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.63 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.63 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.63 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.63 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.62 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.62 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.62 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.62 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.62 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.62 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.61 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.61 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.61 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.61 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.6 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.6 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.59 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.58 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.58 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.58 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.57 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.57 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.57 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.57 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.57 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.56 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.56 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.55 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.55 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.55 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.55 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.54 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.54 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.53 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.53 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.53 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.52 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.52 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.52 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.51 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.51 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.51 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.51 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.51 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.51 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.5 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.5 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.49 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.49 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.49 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.48 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.48 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.48 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.48 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.47 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.47 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.47 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.47 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.47 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.46 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.46 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.46 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.46 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.46 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.45 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.45 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.45 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.45 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.44 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.44 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.44 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.43 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.43 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.43 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.43 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.43 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.42 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.42 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.42 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.41 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.41 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.41 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.41 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.41 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.4 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.4 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.4 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.4 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.4 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.4 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.39 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.39 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.39 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.39 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.39 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.39 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.39 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.38 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.38 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.38 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.38 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.38 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.37 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.37 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.37 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.36 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.36 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.35 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.35 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.35 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.35 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.35 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.35 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.35 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.34 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.34 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.34 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.34 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.34 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.34 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.34 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.33 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.33 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.33 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.33 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.33 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.33 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.33 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.33 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.32 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.32 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.32 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.32 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.32 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.32 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.32 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.32 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.32 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.32 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.32 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.32 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.32 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.32 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.31 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.31 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.31 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.31 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.3 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.3 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.3 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.3 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.3 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.3 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.3 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.3 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.3 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.3 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.3 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.29 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.29 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.29 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.29 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.29 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.29 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.29 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.29 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.29 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.29 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.29 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.29 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.28 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.28 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.28 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.28 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.28 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.28 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.28 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.28 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.28 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.27 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.27 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.27 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.26 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.26 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.26 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.26 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.26 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.26 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.26 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.26 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.26 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.26 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.25 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.25 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.25 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.25 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.24 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.24 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.23 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.23 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.23 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.23 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.23 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.23 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.23 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.23 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.23 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.23 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.23 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.23 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.23 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.22 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.22 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.22 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.22 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.22 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.22 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.22 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.22 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.21 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.21 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.21 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.21 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.21 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.2 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.2 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.2 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.2 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.2 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.2 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.2 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.2 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.19 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.19 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.19 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.18 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.18 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.18 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.18 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.18 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.18 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.17 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.17 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.17 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.17 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.17 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.17 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.17 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.16 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.16 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.16 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.16 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.16 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.16 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.16 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.16 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.16 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.16 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.15 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.15 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.15 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.15 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.15 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.14 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.14 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.14 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.14 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.14 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.14 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.14 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.14 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.14 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.14 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.13 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.13 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.13 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.13 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.13 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.13 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.13 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.13 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.12 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.12 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.11 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.11 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.11 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.1 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.1 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.09 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.09 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.09 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.09 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.09 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.09 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.08 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.08 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.07 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.07 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.07 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.06 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.06 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.06 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.06 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.05 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.05 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.05 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.05 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.04 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.04 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.04 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.04 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.04 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.04 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.04 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.03 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.03 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.03 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.03 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.03 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.03 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.02 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.02 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.01 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.01 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.0 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.0 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.0 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.0 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.99 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.99 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.99 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.99 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.99 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.99 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.99 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.99 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.99 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.98 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.98 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.98 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.97 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.97 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.96 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.96 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.95 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.95 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.95 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.94 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.94 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.93 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.93 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.92 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.92 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.91 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.91 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.91 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.91 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.9 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.9 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.9 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.9 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.89 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.89 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.89 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.89 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.89 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.89 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.88 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.86 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.86 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.86 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.85 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.84 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.84 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.84 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.83 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.83 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.83 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.83 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.83 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.82 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.81 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.8 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.8 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.8 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.79 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.79 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.79 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.79 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.79 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.78 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.78 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.78 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.78 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.77 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.76 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.75 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.74 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.74 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.74 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.74 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.73 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.72 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.72 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.72 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.72 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.72 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.68 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.67 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.67 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.67 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.67 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.67 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.66 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.64 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.63 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.63 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.62 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.61 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.61 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.61 |
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-19 Score=194.78 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=114.7
Q ss_pred EEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcC
Q 008457 328 IEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDG 407 (564)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~ 407 (564)
..+...|..+.+... ....+|... .......++.. ..++++|||||||+|+++..++..++.+|+++|+
T Consensus 502 ~~v~E~g~~~~v~~~------~~~~tG~f~--d~r~~r~~l~~---~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~ 570 (703)
T 3v97_A 502 LEVTEYNAHLWVNLT------DYLDTGLFL--DHRIARRMLGQ---MSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDM 570 (703)
T ss_dssp EEEEETTEEEEECSS------SSSSCSCCG--GGHHHHHHHHH---HCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEES
T ss_pred EEEEECCEEEEEecc------ccccCCCcc--cHHHHHHHHHH---hcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeC
Confidence 445556666655321 223556322 22222333332 2378899999999999988888877788999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeC-----------CCChHHHHHH
Q 008457 408 DSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-----------PEAILPLFAT 476 (564)
Q Consensus 408 ~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-----------~~~~~~l~~~ 476 (564)
|+.+++.+++|+..|++.. .++.+...|.. +.+ +...++||+|++....|. ...+..+++.
T Consensus 571 s~~al~~a~~N~~~ngl~~--~~v~~i~~D~~-----~~l-~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~ 642 (703)
T 3v97_A 571 SRTYLEWAERNLRLNGLTG--RAHRLIQADCL-----AWL-REANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKD 642 (703)
T ss_dssp CHHHHHHHHHHHHHTTCCS--TTEEEEESCHH-----HHH-HHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCc--cceEEEecCHH-----HHH-HhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHH
Confidence 9999999999999998741 35666554432 111 223568999986443332 2356788999
Q ss_pred HHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 477 AKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 477 ~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
+.++| +|+| .++++...+....+ .+.+.+.|+++..+...
T Consensus 643 a~~~L-kpgG--------~L~~s~~~~~~~~~--~~~l~~~g~~~~~i~~~ 682 (703)
T 3v97_A 643 LKRLL-RAGG--------TIMFSNNKRGFRMD--LDGLAKLGLKAQEITQK 682 (703)
T ss_dssp HHHHE-EEEE--------EEEEEECCTTCCCC--HHHHHHTTEEEEECTTT
T ss_pred HHHhc-CCCc--------EEEEEECCcccccC--HHHHHHcCCceeeeeec
Confidence 99999 9988 88888777665542 45566789987776533
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=179.50 Aligned_cols=162 Identities=19% Similarity=0.210 Sum_probs=119.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhC--CCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
.++.+|||||||+|.++..|++.. ++++|+|+|+|+.|++.|+++.... ..+++++++|+... +.+.||+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~ 142 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI------AIENASM 142 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC------CCCSEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc------ccccccc
Confidence 689999999999999999999874 5789999999999999999986533 35799999998643 3457999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh--hhccc------cccccccee-ecCC--Cceeec
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE--RLTGK------DQKISENFY-VRGD--GTRAFY 218 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~--~~~~~------~~~~~~~~~-~~~~--~~~~~~ 218 (564)
|+++.++||+++.+...+|++++++|||||.|++.+......... .+... .....+... .... ......
T Consensus 143 v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~ 222 (261)
T 4gek_A 143 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLT 222 (261)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCC
T ss_pred ceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccC
Confidence 999999999998888899999999999999999988765432111 11000 000000000 0000 001124
Q ss_pred cCHHHHHHHHHhCCCcEEEeeee
Q 008457 219 FSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 219 ~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
++.+++.++|+++||+.+++++.
T Consensus 223 ~s~~~~~~~L~~AGF~~ve~~fq 245 (261)
T 4gek_A 223 DSVETHKARLHKAGFEHSELWFQ 245 (261)
T ss_dssp BCHHHHHHHHHHHTCSEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCeEEEEEE
Confidence 68999999999999998887654
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-20 Score=178.46 Aligned_cols=200 Identities=20% Similarity=0.288 Sum_probs=130.6
Q ss_pred EEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcC-ChhHHHHH
Q 008457 337 FKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDG-DSIALDLL 415 (564)
Q Consensus 337 ~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~-~~~~l~~~ 415 (564)
..+++.... ..+|+.+|+++..|++++..+....++++|||||||+|.++..++..+..+|+++|+ ++.+++.+
T Consensus 45 ~~~~i~g~~-----~~~g~~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a 119 (281)
T 3bzb_A 45 VQVQTTQEH-----PLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSL 119 (281)
T ss_dssp EEEECC----------------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHH
T ss_pred eEEEECCCC-----CCCCceeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHH
Confidence 555554433 678999999999999999998766788999999999998887777666669999999 89999999
Q ss_pred HHHHHhcCCCCC------CCceEEEEeecCCCccchhhhh-hcCCCccEEEEeceeeCCCChHHHHHHHHHHhhc---c-
Q 008457 416 AQNVTANLKPPF------LAKLITKRLEWGNRDHIEAIKE-ENNEGFEVILGTDVSYIPEAILPLFATAKELTAS---S- 484 (564)
Q Consensus 416 ~~n~~~n~~~~~------~~~i~~~~l~w~~~~~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~---~- 484 (564)
++|+..|..... ..++.+..++|++.. ..+.. +..++||+|+++|++|+...+..+++++.++| + |
T Consensus 120 ~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~L-k~~~p~ 196 (281)
T 3bzb_A 120 ESNIREHTANSCSSETVKRASPKVVPYRWGDSP--DSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLL-ALPAND 196 (281)
T ss_dssp HHHHHTTCC----------CCCEEEECCTTSCT--HHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHB-CCTTTC
T ss_pred HHHHHHhhhhhcccccCCCCCeEEEEecCCCcc--HHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHh-cccCCC
Confidence 999966532111 136888899998642 11111 13578999999999999999999999999999 8 8
Q ss_pred -CCCCCCCCCcEEEEEEeeccC----ChhHHHHHHHHcC-CeEEEEcCCCCCCCCccccccccccCCCCcccCCCCceeE
Q 008457 485 -NKSLREDQQPAFILCHIFRQV----DEPSMLSAATQCG-FRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSPALNI 558 (564)
Q Consensus 485 -~g~~~~~~~~~~~~~~~~r~~----~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 558 (564)
+| .+++++..++. ....|++.+.+.| |.++.+.+.... ..+|+.+.+++..+ ..+++
T Consensus 197 ~gG--------~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~~~--------~~~f~~~~~~~~~r-~~V~~ 259 (281)
T 3bzb_A 197 PTA--------VALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQM--------DPMFPDDPGDVCIR-GQVHR 259 (281)
T ss_dssp TTC--------EEEEEECC--------CTHHHHHHHHSTTEEEEEEECCC---------------------------CEE
T ss_pred CCC--------EEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEecccccc--------ccccccCCcchhcc-ceEEE
Confidence 76 77776665442 2357899999999 999999744221 12466666665553 33444
Q ss_pred EEe
Q 008457 559 MYF 561 (564)
Q Consensus 559 ~~~ 561 (564)
+.+
T Consensus 260 ~~l 262 (281)
T 3bzb_A 260 WRL 262 (281)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=169.59 Aligned_cols=164 Identities=18% Similarity=0.136 Sum_probs=128.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. ++.+.++|+... + ++++||+|++.
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~----~-~~~~fD~v~~~ 109 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL-----GRPVRTMLFHQL----D-AIDAYDAVWAH 109 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-----TSCCEECCGGGC----C-CCSCEEEEEEC
T ss_pred CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc-----CCceEEeeeccC----C-CCCcEEEEEec
Confidence 46889999999999999999988 679999999999999999875 467778887542 2 57899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC-
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG- 232 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG- 232 (564)
.+++|++.+++..++++++++|||||++++......... .........+++.+++.++++++|
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~aG~ 173 (211)
T 3e23_A 110 ACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEG----------------RDKLARYYNYPSEEWLRARYAEAGT 173 (211)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCE----------------ECTTSCEECCCCHHHHHHHHHHHCC
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccc----------------ccccchhccCCCHHHHHHHHHhCCC
Confidence 999999888999999999999999999999865443210 001122334679999999999999
Q ss_pred CcEEEeeeeeccccccccccccceeEEEEEEEecCCCC
Q 008457 233 FDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGGAT 270 (564)
Q Consensus 233 f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 270 (564)
|+++...........+. ...|+..+..+++..+
T Consensus 174 f~~~~~~~~~~~~~~~~-----~~~wl~~~~~~~~~~~ 206 (211)
T 3e23_A 174 WASVAVESSEGKGFDQE-----LAQFLHVSVRKPELEH 206 (211)
T ss_dssp CSEEEEEEEEEECTTSC-----EEEEEEEEEECCCC--
T ss_pred cEEEEEEeccCCCCCCC-----CceEEEEEEecCcccc
Confidence 99998776554333322 2679988888877544
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=181.39 Aligned_cols=190 Identities=15% Similarity=0.195 Sum_probs=135.7
Q ss_pred HHHHH--HHhHhHHHHHHhhccccccc--cchhHHHHhhhc--cCCCCCeEEEEcCCccccHHHHHHhCCCc-EEEEEeC
Q 008457 35 DKYER--EAKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYF--SGAGRKDVLEVGCGAGNTIFPLIAAYPDV-FVYACDF 107 (564)
Q Consensus 35 ~~y~~--~a~~ywd~~~~~~~~~~~~~--~~~~~~~~~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~~iD~ 107 (564)
+.|+. ....||+.||+.....+..+ .+|+...+.+++ ...++.+|||||||+|.++..++.. +. +|+|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~ 86 (263)
T 2a14_A 9 DEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDF 86 (263)
T ss_dssp HHHHHHCCHHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEES
T ss_pred hhhhhccCHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccc
Confidence 34555 46789999997765555443 566666776665 3467889999999999887766655 44 6999999
Q ss_pred ChHHHHHHHhcccccC------------------------------CCee-EEEecCCcccccCCCCCCceeEEEEcccc
Q 008457 108 SPRAVNLVMTHKDFTE------------------------------TRVS-TFVCDLISDDLSRQISPSSIDIVTMVFVL 156 (564)
Q Consensus 108 s~~~l~~a~~~~~~~~------------------------------~~i~-~~~~d~~~~~~~~~~~~~~fD~V~~~~vl 156 (564)
|+.|++.|+++..... .++. +.++|+.......+...++||+|+++.+|
T Consensus 87 s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l 166 (263)
T 2a14_A 87 TDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAM 166 (263)
T ss_dssp CHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH
T ss_pred cHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHH
Confidence 9999999987643211 1233 88899876321112235789999999999
Q ss_pred cCCC--hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCC-ceeeccCHHHHHHHHHhCCC
Q 008457 157 SAVS--PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDG-TRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 157 ~~~~--~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~aGf 233 (564)
||+. .+++..++++++++|||||.|++.+..... ++..+.. ...++++.+++.++|+++||
T Consensus 167 ~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~----------------~~~~g~~~~~~~~~~~~~l~~~l~~aGF 230 (263)
T 2a14_A 167 ECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP----------------SYMVGKREFSCVALEKGEVEQAVLDAGF 230 (263)
T ss_dssp HHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC----------------EEEETTEEEECCCCCHHHHHHHHHHTTE
T ss_pred HHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCc----------------cceeCCeEeeccccCHHHHHHHHHHCCC
Confidence 9863 367889999999999999999998643221 1111111 11235699999999999999
Q ss_pred cEEEeeeee
Q 008457 234 DVEELGLCC 242 (564)
Q Consensus 234 ~~~~~~~~~ 242 (564)
+++......
T Consensus 231 ~i~~~~~~~ 239 (263)
T 2a14_A 231 DIEQLLHSP 239 (263)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEeecc
Confidence 998876653
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=168.07 Aligned_cols=181 Identities=14% Similarity=0.084 Sum_probs=133.3
Q ss_pred hHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHH
Q 008457 32 FWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRA 111 (564)
Q Consensus 32 ~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~ 111 (564)
...+.|+..+..|.+.+ ... ..........+..++. ..+.+|||+|||+|.++..+++. +.+|+|+|+|+.+
T Consensus 4 ~~~~~y~~~a~~y~~~~-~~~----~~~~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~ 75 (203)
T 3h2b_A 4 DVSKAYSSPTFDAEALL-GTV----ISAEDPDRVLIEPWAT-GVDGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRL 75 (203)
T ss_dssp HHHHHHHCTTTCHHHHT-CSS----CCTTCTTHHHHHHHHH-HCCSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHH
T ss_pred HHHHHHhhHHHHHHHHh-hhh----ccccHHHHHHHHHHhc-cCCCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHH
Confidence 45667777777664432 111 1111111122222232 33889999999999999999988 6799999999999
Q ss_pred HHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch
Q 008457 112 VNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL 191 (564)
Q Consensus 112 l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~ 191 (564)
++.|+++. .++.++++|+... ++++++||+|++..+++|++.+++..+++++.++|||||.+++.++.....
T Consensus 76 ~~~a~~~~----~~~~~~~~d~~~~----~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 147 (203)
T 3h2b_A 76 VELARQTH----PSVTFHHGTITDL----SDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSL 147 (203)
T ss_dssp HHHHHHHC----TTSEEECCCGGGG----GGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSC
T ss_pred HHHHHHhC----CCCeEEeCccccc----ccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCch
Confidence 99999874 3688999998653 356789999999999999987889999999999999999999988765431
Q ss_pred hhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeeeec
Q 008457 192 AQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCK 243 (564)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 243 (564)
. . ........++++.+++.++++++||+++.......
T Consensus 148 ~--------------~-~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 148 E--------------P-MYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp E--------------E-ECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred h--------------h-hhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence 0 0 00112233467999999999999999998766543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=173.51 Aligned_cols=178 Identities=15% Similarity=0.180 Sum_probs=128.6
Q ss_pred HHHHHhHhHHHHHHhhcccccc-ccc-hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHH
Q 008457 37 YEREAKKYWDLFYKRHQDRFFK-DRH-YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL 114 (564)
Q Consensus 37 y~~~a~~ywd~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~ 114 (564)
+......||+..|......+.. ... .+...+..+....++.+|||+|||+|..+..|++. |.+|+|+|+|+.|++.
T Consensus 28 ~~~~~~~~Wd~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~ 105 (252)
T 2gb4_A 28 NQVLTLEDWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIRE 105 (252)
T ss_dssp TCCCCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHH
T ss_pred cccCCHHHHHHHHhcCCCCcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHH
Confidence 3344567888887665433321 222 23333333333357899999999999999999998 7899999999999999
Q ss_pred HHhcccc------------------cCCCeeEEEecCCcccccCCCC-CCceeEEEEcccccCCChhHHHHHHHHHHhcc
Q 008457 115 VMTHKDF------------------TETRVSTFVCDLISDDLSRQIS-PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVL 175 (564)
Q Consensus 115 a~~~~~~------------------~~~~i~~~~~d~~~~~~~~~~~-~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~L 175 (564)
|+++... ...++++.++|+..... . .++||+|++..+++|++.++...+++++.++|
T Consensus 106 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~----~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~L 181 (252)
T 2gb4_A 106 FFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR----ANIGKFDRIWDRGALVAINPGDHDRYADIILSLL 181 (252)
T ss_dssp HHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG----GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTE
T ss_pred HHHhcccccccccccccccccccccCCCceEEEECccccCCc----ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHc
Confidence 9876431 23679999999975432 3 37999999999999999888889999999999
Q ss_pred CCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 176 KPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 176 kpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
||||++++.++..... . .....+.++++++.++|.. +|+++....
T Consensus 182 kpGG~l~l~~~~~~~~--------~-----------~~g~~~~~~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 182 RKEFQYLVAVLSYDPT--------K-----------HAGPPFYVPSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp EEEEEEEEEEEECCTT--------S-----------CCCSSCCCCHHHHHHHHTT-TEEEEEEEE
T ss_pred CCCeEEEEEEEecCCc--------c-----------CCCCCCCCCHHHHHHHhhC-CeEEEEEec
Confidence 9999997654432110 0 0011223689999999987 599887653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=171.65 Aligned_cols=183 Identities=16% Similarity=0.199 Sum_probs=137.9
Q ss_pred HHhHhHHHHHHhhccccccc-cchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhc
Q 008457 40 EAKKYWDLFYKRHQDRFFKD-RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH 118 (564)
Q Consensus 40 ~a~~ywd~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~ 118 (564)
....+|+..|......+... .......+..... .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++
T Consensus 31 ~~~~~w~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~ 107 (235)
T 3lcc_A 31 VEEGGWEKCWEEEITPWDQGRATPLIVHLVDTSS-LPLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANET 107 (235)
T ss_dssp HHHHHHHHHHHTTCCTTCCSSCCHHHHHHHHTTC-SCCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHH
T ss_pred cCHHHHHHHHhcCCCCcccCCCCHHHHHHHHhcC-CCCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHH
Confidence 34578998887754444322 2212222222222 34569999999999999988764 78999999999999999998
Q ss_pred ccc--cCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhh
Q 008457 119 KDF--TETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL 196 (564)
Q Consensus 119 ~~~--~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~ 196 (564)
... ...++++.++|+.... ++++||+|++..+++|++++++..+++++.++|||||.+++.++.....
T Consensus 108 ~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----- 177 (235)
T 3lcc_A 108 YGSSPKAEYFSFVKEDVFTWR-----PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH----- 177 (235)
T ss_dssp HTTSGGGGGEEEECCCTTTCC-----CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC-----
T ss_pred hhccCCCcceEEEECchhcCC-----CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc-----
Confidence 764 2357999999986532 4569999999999999988899999999999999999999987654321
Q ss_pred cccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeeeecccccccc
Q 008457 197 TGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRAR 250 (564)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~ 250 (564)
.....+.++.+++.++|+++||+++.+.........+..
T Consensus 178 ---------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~g 216 (235)
T 3lcc_A 178 ---------------VGGPPYKVDVSTFEEVLVPIGFKAVSVEENPHAIPTRKG 216 (235)
T ss_dssp ---------------CSCSSCCCCHHHHHHHHGGGTEEEEEEEECTTCCTTTTT
T ss_pred ---------------CCCCCccCCHHHHHHHHHHcCCeEEEEEecCCccccccC
Confidence 111223468999999999999999998887776666544
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-19 Score=167.81 Aligned_cols=164 Identities=17% Similarity=0.179 Sum_probs=123.8
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.|+++....+ ++.++++|+... +++ ++||+|++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~----~~~-~~fD~v~~ 115 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKY----DFE-EKYDMVVS 115 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTC----CCC-SCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhcc----CCC-CCceEEEE
Confidence 367899999999999999999999888999999999999999999876544 899999998653 223 89999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhh--cc-cc-----ccccc----ceeecCCCceeeccC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL--TG-KD-----QKISE----NFYVRGDGTRAFYFS 220 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~--~~-~~-----~~~~~----~~~~~~~~~~~~~~~ 220 (564)
..+++|++..+...++++++++|||||.+++.++.......... .. +. ..... .++. ...+...++
T Consensus 116 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 193 (234)
T 3dtn_A 116 ALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYE--RSKLDKDIE 193 (234)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC------CCCCCB
T ss_pred eCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHH--hcccccccC
Confidence 99999998666668999999999999999998876544221110 00 00 00000 0000 112334578
Q ss_pred HHHHHHHHHhCCCcEEEeeeeecc
Q 008457 221 NDFLTSLFKENGFDVEELGLCCKQ 244 (564)
Q Consensus 221 ~~~l~~~l~~aGf~~~~~~~~~~~ 244 (564)
.+++.++|+++||+.+++.+....
T Consensus 194 ~~~~~~ll~~aGF~~v~~~~~~~~ 217 (234)
T 3dtn_A 194 MNQQLNWLKEAGFRDVSCIYKYYQ 217 (234)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEETT
T ss_pred HHHHHHHHHHcCCCceeeeeeecc
Confidence 999999999999999988766543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=163.54 Aligned_cols=156 Identities=21% Similarity=0.174 Sum_probs=115.5
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++. ...++.+.++|+... +++++||+|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~---~~~~~~~~~~d~~~~-----~~~~~~D~v~~ 113 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRH---GLDNVEFRQQDLFDW-----TPDRQWDAVFF 113 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGG---CCTTEEEEECCTTSC-----CCSSCEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhc---CCCCeEEEecccccC-----CCCCceeEEEE
Confidence 356789999999999999999998 77999999999999999982 226799999998653 36789999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcc-cccccccceeecCCCce----eeccCHHHHHHH
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG-KDQKISENFYVRGDGTR----AFYFSNDFLTSL 227 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~ 227 (564)
..+++|++......+++++.++|||||.+++.++............ ......... ...+.+ ..+++.+++.++
T Consensus 114 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 191 (218)
T 3ou2_A 114 AHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRT--LQDGRSFRIVKVFRSPAELTER 191 (218)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEE--CTTSCEEEEECCCCCHHHHHHH
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeee--cCCcchhhHhhcCCCHHHHHHH
Confidence 9999999866678999999999999999999988764322111110 000000000 112221 225799999999
Q ss_pred HHhCCCcEEEeee
Q 008457 228 FKENGFDVEELGL 240 (564)
Q Consensus 228 l~~aGf~~~~~~~ 240 (564)
++++||++.....
T Consensus 192 l~~aGf~v~~~~~ 204 (218)
T 3ou2_A 192 LTALGWSCSVDEV 204 (218)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHCCCEEEeeec
Confidence 9999999655443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=168.70 Aligned_cols=163 Identities=20% Similarity=0.285 Sum_probs=119.4
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCc
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
+.+.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++.. .++.+.++|+... +++ ++
T Consensus 37 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~----~~~-~~ 106 (220)
T 3hnr_A 37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSF----EVP-TS 106 (220)
T ss_dssp HHHHHHHTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSC----CCC-SC
T ss_pred HHHHhhccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhc----CCC-CC
Confidence 334444468899999999999999999988 7899999999999999998865 5788999998653 334 89
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhh-hccccccccccee-ecCCCceeeccCHHHH
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQER-LTGKDQKISENFY-VRGDGTRAFYFSNDFL 224 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l 224 (564)
||+|++..+++|++......+|+++.++|||||.+++.++......... ...... ...+. ........++++.+++
T Consensus 107 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 184 (220)
T 3hnr_A 107 IDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAK--QRGFHQLANDLQTEYYTRIPVM 184 (220)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHH--HTTCHHHHHHHHHSCCCBHHHH
T ss_pred eEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHH--hCCCccchhhcchhhcCCHHHH
Confidence 9999999999999755555699999999999999999986654432211 100000 00000 0001112235589999
Q ss_pred HHHHHhCCCcEEEeeee
Q 008457 225 TSLFKENGFDVEELGLC 241 (564)
Q Consensus 225 ~~~l~~aGf~~~~~~~~ 241 (564)
.++++++||+++.....
T Consensus 185 ~~~l~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 185 QTIFENNGFHVTFTRLN 201 (220)
T ss_dssp HHHHHHTTEEEEEEECS
T ss_pred HHHHHHCCCEEEEeecc
Confidence 99999999988766543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-19 Score=164.34 Aligned_cols=169 Identities=12% Similarity=0.082 Sum_probs=129.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++ +|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+.++.+.++|+... ++++++||+|++.
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v~~~ 101 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADF----DIVADAWEGIVSI 101 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTB----SCCTTTCSEEEEE
T ss_pred CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhc----CCCcCCccEEEEE
Confidence 345 9999999999999999887 67999999999999999988765455789999998653 3567899999995
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
+.|++.+++..+++++.++|||||.+++.++....... . . .......++++.+++.++|+ ||
T Consensus 102 --~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~-~----------~~~~~~~~~~~~~~l~~~l~--Gf 163 (202)
T 2kw5_A 102 --FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY---N-T----------GGPKDLDLLPKLETLQSELP--SL 163 (202)
T ss_dssp --CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG---T-S----------CCSSSGGGCCCHHHHHHHCS--SS
T ss_pred --hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC---C-C----------CCCCcceeecCHHHHHHHhc--Cc
Confidence 45667678999999999999999999999887654321 0 0 00112234679999999998 99
Q ss_pred cEEEeeeeeccccccccccccceeEEEEEEEecCC
Q 008457 234 DVEELGLCCKQVENRARELVMNRRWVQAVFCSSGG 268 (564)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 268 (564)
+++.......+... .......+.|+....++.+.
T Consensus 164 ~v~~~~~~~~~~~~-g~~~~~~~~~i~~~~~~~~~ 197 (202)
T 2kw5_A 164 NWLIANNLERNLDE-GAYHQGKAALIQLLGQKLEH 197 (202)
T ss_dssp CEEEEEEEEEECSC-SSSSCCEEEEEEEEECCCSS
T ss_pred eEEEEEEEEeecCC-CCCcccHHHHHHHHHHhhhh
Confidence 99987776655422 23334558899887666653
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-19 Score=164.23 Aligned_cols=148 Identities=12% Similarity=0.114 Sum_probs=113.7
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-------------cCCCeeEEEecCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-------------TETRVSTFVCDLIS 135 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-------------~~~~i~~~~~d~~~ 135 (564)
..+...++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++... ...+++++++|+..
T Consensus 16 ~~l~~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 93 (203)
T 1pjz_A 16 SSLNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 93 (203)
T ss_dssp HHHCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred HhcccCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence 3334467899999999999999999998 78999999999999999987542 23579999999965
Q ss_pred ccccCCCCC-CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCc
Q 008457 136 DDLSRQISP-SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGT 214 (564)
Q Consensus 136 ~~~~~~~~~-~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (564)
.. +++ ++||+|++..+++|++.++...++++++++|||||++++........ . ...
T Consensus 94 l~----~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~---------~----------~~~ 150 (203)
T 1pjz_A 94 LT----ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA---------L----------LEG 150 (203)
T ss_dssp ST----HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS---------S----------SSS
T ss_pred CC----cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc---------c----------cCC
Confidence 42 233 68999999999999987788889999999999999855544332110 0 011
Q ss_pred eeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 215 RAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 215 ~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
..+.++.+++.+++++ ||+++......
T Consensus 151 ~~~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 151 PPFSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp CCCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCCCHHHHHHHhcC-CcEEEEecccc
Confidence 1223689999999998 99987665443
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=167.80 Aligned_cols=155 Identities=14% Similarity=0.246 Sum_probs=121.7
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+.+...++.+|||||||+|.++..+++.+ ..+|+++|+|+.+++.|+++.... .++.+.++|+... +++++
T Consensus 84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~----~~~~~ 157 (254)
T 1xtp_A 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETA----TLPPN 157 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGC----CCCSS
T ss_pred HHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHC----CCCCC
Confidence 33444455678999999999999999998875 457999999999999999887543 5789999998643 45678
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+||+|++..+++|++.+++..+++++.++|||||++++.++..... .++.. .....++++.+++.
T Consensus 158 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~ 222 (254)
T 1xtp_A 158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD--------------RFLVD-KEDSSLTRSDIHYK 222 (254)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--C--------------CEEEE-TTTTEEEBCHHHHH
T ss_pred CeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--------------cceec-ccCCcccCCHHHHH
Confidence 9999999999999987789999999999999999999987543211 00111 11223356999999
Q ss_pred HHHHhCCCcEEEeeee
Q 008457 226 SLFKENGFDVEELGLC 241 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~~ 241 (564)
++|+++||+++.....
T Consensus 223 ~~l~~aGf~~~~~~~~ 238 (254)
T 1xtp_A 223 RLFNESGVRVVKEAFQ 238 (254)
T ss_dssp HHHHHHTCCEEEEEEC
T ss_pred HHHHHCCCEEEEeeec
Confidence 9999999999877554
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-19 Score=167.34 Aligned_cols=145 Identities=17% Similarity=0.243 Sum_probs=116.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ +.+.++|+... ..++++++||+|++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~--~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK-------FNVVKSDAIEY--LKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT-------SEEECSCHHHH--HHTSCTTCBSEEEEE
T ss_pred cCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh-------cceeeccHHHH--hhhcCCCCeeEEEEC
Confidence 56799999999999999999988 67899999999999999876 56777777442 125678999999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.+++|++..+...+++++.++|||||.+++.+++........- ++ ....+..+++.+++.++++++||
T Consensus 109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~l~~~l~~aGf 176 (240)
T 3dli_A 109 HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLIN----------FY--IDPTHKKPVHPETLKFILEYLGF 176 (240)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHH----------HT--TSTTCCSCCCHHHHHHHHHHHTC
T ss_pred CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHH----------Hh--cCccccccCCHHHHHHHHHHCCC
Confidence 9999998778899999999999999999999887654322110 00 11233446789999999999999
Q ss_pred cEEEeeee
Q 008457 234 DVEELGLC 241 (564)
Q Consensus 234 ~~~~~~~~ 241 (564)
+++.....
T Consensus 177 ~~~~~~~~ 184 (240)
T 3dli_A 177 RDVKIEFF 184 (240)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 98876554
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-19 Score=168.15 Aligned_cols=146 Identities=16% Similarity=0.209 Sum_probs=116.2
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-CCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.|+++.... ..++.+.++|+... ++++++||+|++.
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v~~~ 153 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF----TPEPDSYDVIWIQ 153 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC----CCCSSCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc----CCCCCCEEEEEEc
Confidence 68999999999999999988875 568999999999999999887644 35688999987543 3456789999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.+++|++......+++++.++|||||.+++.++.... . ..+.. .......+.+++.++|+++||
T Consensus 154 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~-----------~~~~~--~~~~~~~~~~~~~~~l~~aGf 217 (241)
T 2ex4_A 154 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE---G-----------VILDD--VDSSVCRDLDVVRRIICSAGL 217 (241)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS---S-----------EEEET--TTTEEEEBHHHHHHHHHHTTC
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC---c-----------ceecc--cCCcccCCHHHHHHHHHHcCC
Confidence 9999998666779999999999999999998765432 0 11111 111223489999999999999
Q ss_pred cEEEeeee
Q 008457 234 DVEELGLC 241 (564)
Q Consensus 234 ~~~~~~~~ 241 (564)
+++.....
T Consensus 218 ~~~~~~~~ 225 (241)
T 2ex4_A 218 SLLAEERQ 225 (241)
T ss_dssp CEEEEEEC
T ss_pred eEEEeeec
Confidence 99887554
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=167.15 Aligned_cols=162 Identities=16% Similarity=0.194 Sum_probs=127.5
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 142 (564)
....+.+.+...++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++.... .++++.++|+... ++
T Consensus 43 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~----~~ 116 (266)
T 3ujc_A 43 ATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN-NKIIFEANDILTK----EF 116 (266)
T ss_dssp HHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTTC----CC
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccccC----CC
Confidence 34455556666788999999999999999999976 689999999999999999987654 7899999998653 45
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchh--hhhhcccccccccceeecCCCceeeccC
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLA--QERLTGKDQKISENFYVRGDGTRAFYFS 220 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (564)
++++||+|++..+++|++..++..+++++.++|||||.+++.++...... ...+.... ......+++
T Consensus 117 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 185 (266)
T 3ujc_A 117 PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYV-----------KQRKYTLIT 185 (266)
T ss_dssp CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHH-----------HHHTCCCCC
T ss_pred CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHH-----------hcCCCCCCC
Confidence 78899999999999999888999999999999999999999886544311 00000000 001122568
Q ss_pred HHHHHHHHHhCCCcEEEeeee
Q 008457 221 NDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 221 ~~~l~~~l~~aGf~~~~~~~~ 241 (564)
.+++.++++++||+++.....
T Consensus 186 ~~~~~~~l~~~Gf~~~~~~~~ 206 (266)
T 3ujc_A 186 VEEYADILTACNFKNVVSKDL 206 (266)
T ss_dssp HHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEEEeC
Confidence 999999999999999876544
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-19 Score=165.88 Aligned_cols=168 Identities=14% Similarity=0.147 Sum_probs=122.6
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~ 142 (564)
..+.+.+...++ +|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|+++....+ .++++.++|+... ++
T Consensus 34 ~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~ 107 (219)
T 3dlc_A 34 ENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI----PI 107 (219)
T ss_dssp HHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC----SS
T ss_pred HHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC----CC
Confidence 444455554445 9999999999999999998 67899999999999999998865433 4799999998653 45
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHH
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
++++||+|++..+++|+ .++..+++++.++|||||.+++.+..........+..........+... ...+..+++.+
T Consensus 108 ~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 184 (219)
T 3dlc_A 108 EDNYADLIVSRGSVFFW--EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEF-NRKNISQENVE 184 (219)
T ss_dssp CTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHH-HHHHSSHHHHH
T ss_pred CcccccEEEECchHhhc--cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhh-hhhccccCCHH
Confidence 78899999999999999 4788999999999999999999876554422222111111111111000 00122245889
Q ss_pred HHHHHHHhCCCcEEEeeee
Q 008457 223 FLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~ 241 (564)
++.++|+++||+.+++...
T Consensus 185 ~~~~~l~~aGf~~v~~~~~ 203 (219)
T 3dlc_A 185 RFQNVLDEIGISSYEIILG 203 (219)
T ss_dssp HHHHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEec
Confidence 9999999999998876543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-18 Score=160.88 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=123.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC------CeeEEEecCCcccccCCCCCCce
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET------RVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~------~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. ++.+.+.|+... ++++++|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~ 102 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL----SFHDSSF 102 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC----CSCTTCE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc----CCCCCce
Confidence 57899999999999999999988 77999999999999999987654332 678999998643 4568899
Q ss_pred eEEEEcccccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhh---hccc--ccccccceeecCC-----Ccee
Q 008457 148 DIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQER---LTGK--DQKISENFYVRGD-----GTRA 216 (564)
Q Consensus 148 D~V~~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~-----~~~~ 216 (564)
|+|++..+++|++ .+....+++++.++|||||.+++.++......... .... .......+..... ....
T Consensus 103 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T 3sm3_A 103 DFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIA 182 (235)
T ss_dssp EEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred eEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceee
Confidence 9999999999996 34455899999999999999999887654221110 0000 0000001111100 1234
Q ss_pred eccCHHHHHHHHHhCCCcEEEeeeeeccccc
Q 008457 217 FYFSNDFLTSLFKENGFDVEELGLCCKQVEN 247 (564)
Q Consensus 217 ~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~ 247 (564)
++++.+++.++|+++||+++.+.........
T Consensus 183 ~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~ 213 (235)
T 3sm3_A 183 HHFTEKELVFLLTDCRFEIDYFRVKELETRT 213 (235)
T ss_dssp ECBCHHHHHHHHHTTTEEEEEEEEEEEECTT
T ss_pred EeCCHHHHHHHHHHcCCEEEEEEecceeecc
Confidence 4789999999999999999988766544444
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=166.98 Aligned_cols=155 Identities=14% Similarity=0.057 Sum_probs=116.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... ++++.++|+... +++++||+|++.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~-----~~~~~fD~v~~~ 110 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD---GITYIHSRFEDA-----QLPRRYDNIVLT 110 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGC-----CCSSCEEEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHc-----CcCCcccEEEEh
Confidence 46789999999999999999887 45799999999999999988753 789999998643 267899999999
Q ss_pred ccccCCChhHHHHHHHHHH-hccCCCeEEEEEecCCCchhhhhh--cccccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 154 FVLSAVSPEKMSLVLQNIK-KVLKPTGYVLFRDYAIGDLAQERL--TGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~-r~LkpgG~lii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
.+++|++ ++..+|++++ ++|||||.+++.+++......... ..................+..+++.+++.+++++
T Consensus 111 ~~l~~~~--~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (250)
T 2p7i_A 111 HVLEHID--DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 188 (250)
T ss_dssp SCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred hHHHhhc--CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence 9999995 6789999999 999999999999877654322110 0110000000000001122346799999999999
Q ss_pred CCCcEEEeee
Q 008457 231 NGFDVEELGL 240 (564)
Q Consensus 231 aGf~~~~~~~ 240 (564)
+||+++....
T Consensus 189 ~Gf~~~~~~~ 198 (250)
T 2p7i_A 189 AGLQVTYRSG 198 (250)
T ss_dssp TTCEEEEEEE
T ss_pred CCCeEEEEee
Confidence 9999987643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-18 Score=161.34 Aligned_cols=157 Identities=20% Similarity=0.215 Sum_probs=122.3
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
..+.+.+ .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..++.++++|+... ++++
T Consensus 45 ~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~----~~~~ 114 (242)
T 3l8d_A 45 PFFEQYV--KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGE--GPDLSFIKGDLSSL----PFEN 114 (242)
T ss_dssp HHHHHHS--CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTC--BTTEEEEECBTTBC----SSCT
T ss_pred HHHHHHc--CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcc--cCCceEEEcchhcC----CCCC
Confidence 3444444 47889999999999999999998 7799999999999999998853 46799999998653 4578
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFL 224 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (564)
++||+|++..+++|++ ++..+++++.++|+|||.+++.++............ . . .....+...++++++
T Consensus 115 ~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~--~-----~--~~~~~~~~~~~~~~~ 183 (242)
T 3l8d_A 115 EQFEAIMAINSLEWTE--EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYP--R-----L--YGKDVVCNTMMPWEF 183 (242)
T ss_dssp TCEEEEEEESCTTSSS--CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGG--G-----G--GTCCCSSCCCCHHHH
T ss_pred CCccEEEEcChHhhcc--CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhh--h-----h--ccccccccCCCHHHH
Confidence 8999999999999994 778999999999999999999987654432211110 0 0 011223345799999
Q ss_pred HHHHHhCCCcEEEeeeee
Q 008457 225 TSLFKENGFDVEELGLCC 242 (564)
Q Consensus 225 ~~~l~~aGf~~~~~~~~~ 242 (564)
.++++++||+++.....+
T Consensus 184 ~~~l~~~Gf~~~~~~~~~ 201 (242)
T 3l8d_A 184 EQLVKEQGFKVVDGIGVY 201 (242)
T ss_dssp HHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHcCCEEEEeeccc
Confidence 999999999998866443
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=161.63 Aligned_cols=198 Identities=13% Similarity=0.124 Sum_probs=130.6
Q ss_pred hhHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChH
Q 008457 31 PFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPR 110 (564)
Q Consensus 31 ~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~ 110 (564)
+...+.|+..+..|.+.+. ... +..........+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~ 85 (227)
T 3e8s_A 11 DALLDSWHQNAQAWIDAVR-HGA--IESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRT 85 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTC--CHHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHH
T ss_pred HHHHHHHHhhHHHHHHHhc-ccc--cccccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHH
Confidence 4456677777665544322 111 11111122233444444467799999999999999999888 779999999999
Q ss_pred HHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCc
Q 008457 111 AVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190 (564)
Q Consensus 111 ~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~ 190 (564)
+++.|+++ .++.+...|+.........+.++||+|++..+++ . .++..++++++++|||||++++.++....
T Consensus 86 ~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 157 (227)
T 3e8s_A 86 LVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWS 157 (227)
T ss_dssp HHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred HHHHHHHh-----cccccchhhHHhhcccccccCCCccEEEECchhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccc
Confidence 99999987 3567777777543211122445699999999999 4 47789999999999999999999887644
Q ss_pred hhhhhhcccc-cccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 191 LAQERLTGKD-QKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
.....+.... ......+.........++++.+++.++|+++||+++.+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 209 (227)
T 3e8s_A 158 VADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQEP 209 (227)
T ss_dssp TCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEECC
T ss_pred cCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEecC
Confidence 3221111000 00000000000123445679999999999999999887653
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=166.67 Aligned_cols=168 Identities=17% Similarity=0.177 Sum_probs=121.0
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+.+...++.+|||+|||+|.++..+++.++. +|+|+|+|+.+++.|+++.. ..++.+.++|+... +++++
T Consensus 35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~----~~~~~ 107 (253)
T 3g5l_A 35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDI----AIEPD 107 (253)
T ss_dssp HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGC----CCCTT
T ss_pred HHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhC----CCCCC
Confidence 3445555568899999999999999999998432 89999999999999998875 56899999998643 45788
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh--hh--c--------ccccccccce---eec
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE--RL--T--------GKDQKISENF---YVR 210 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~--~~--~--------~~~~~~~~~~---~~~ 210 (564)
+||+|++..+++|+ .++..++++++++|||||.+++....+...... .+ . .......... ...
T Consensus 108 ~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (253)
T 3g5l_A 108 AYNVVLSSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFL 185 (253)
T ss_dssp CEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEET
T ss_pred CeEEEEEchhhhhh--hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeec
Confidence 99999999999999 478899999999999999999986543110000 00 0 0000000000 000
Q ss_pred CCCceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 211 GDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 211 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
......+.++.+++.++|+++||+++.+....
T Consensus 186 ~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 186 GEDVQKYHRTVTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp TEEEEEECCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred cccCccEecCHHHHHHHHHHcCCeeeeeecCC
Confidence 01122334599999999999999998876543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-19 Score=172.84 Aligned_cols=161 Identities=17% Similarity=0.224 Sum_probs=118.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ .+++++++|+.... ++++++||+|+
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~v~ 141 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA---SHLETPVDLIL 141 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG---GGCSSCEEEEE
T ss_pred CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh---hhcCCCceEEE
Confidence 34789999999999999999988 7899999999999999998865433 57899999986532 24678999999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhc-ccccccccceeec--CCCceeeccCHHHHHHHH
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT-GKDQKISENFYVR--GDGTRAFYFSNDFLTSLF 228 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l 228 (564)
+..+++|++ ++..+++++.++|||||.+++.+++.......... .....+....... ....+..+++.+++.+++
T Consensus 142 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 219 (285)
T 4htf_A 142 FHAVLEWVA--DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWL 219 (285)
T ss_dssp EESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHH
T ss_pred ECchhhccc--CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHH
Confidence 999999995 67899999999999999999988765432111110 0000111111000 111223467999999999
Q ss_pred HhCCCcEEEeeee
Q 008457 229 KENGFDVEELGLC 241 (564)
Q Consensus 229 ~~aGf~~~~~~~~ 241 (564)
+++||+++.....
T Consensus 220 ~~aGf~v~~~~~~ 232 (285)
T 4htf_A 220 EEAGWQIMGKTGV 232 (285)
T ss_dssp HHTTCEEEEEEEE
T ss_pred HHCCCceeeeeeE
Confidence 9999999876543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=165.57 Aligned_cols=155 Identities=16% Similarity=0.254 Sum_probs=114.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ++.++++|+... ++ +++||+|++.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~----~~-~~~fD~v~~~ 117 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP----DAVLHHGDMRDF----SL-GRRFSAVTCM 117 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTC----CC-SCCEEEEEEC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC----CCEEEECChHHC----Cc-cCCcCEEEEc
Confidence 46789999999999999999888 5689999999999999998754 689999998653 22 6899999999
Q ss_pred c-cccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccc------c---------------cccccceeec
Q 008457 154 F-VLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGK------D---------------QKISENFYVR 210 (564)
Q Consensus 154 ~-vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~------~---------------~~~~~~~~~~ 210 (564)
. +++|++ ++++..+++++.++|||||.+++.++..+.......... . ..+...++..
T Consensus 118 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (263)
T 3pfg_A 118 FSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVA 197 (263)
T ss_dssp TTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEe
Confidence 8 999996 467889999999999999999997654333111100000 0 0000011110
Q ss_pred -CC--------CceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 211 -GD--------GTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 211 -~~--------~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
.+ ..+..+++.+++.++|+++||+++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~ 235 (263)
T 3pfg_A 198 GPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMP 235 (263)
T ss_dssp ETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEES
T ss_pred cCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEee
Confidence 01 112346799999999999999988763
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-18 Score=163.90 Aligned_cols=186 Identities=15% Similarity=0.276 Sum_probs=129.4
Q ss_pred HhHhHHHHHHhhccccccc--cchhHHHHhhhc--cCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHH
Q 008457 41 AKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYF--SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVM 116 (564)
Q Consensus 41 a~~ywd~~~~~~~~~~~~~--~~~~~~~~~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~ 116 (564)
...||+.||......+... ..+....+..++ ...++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~ 96 (265)
T 2i62_A 18 PRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQ 96 (265)
T ss_dssp HHHHHHHHHCCCSSCHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhCcCCcchhHHHHHHhhHHHHHHHhcccccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHH
Confidence 4569999986654433211 111111222222 235678999999999999998887742 48999999999999998
Q ss_pred hcccccCC------------------------------Ce-eEEEecCCcccccCCCCCCceeEEEEcccccCCCh--hH
Q 008457 117 THKDFTET------------------------------RV-STFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSP--EK 163 (564)
Q Consensus 117 ~~~~~~~~------------------------------~i-~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~--~~ 163 (564)
++....+. ++ .+.++|+.......+...++||+|++..+++|+++ .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 176 (265)
T 2i62_A 97 KWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPA 176 (265)
T ss_dssp HHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHH
T ss_pred HHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHH
Confidence 87653221 27 88999987543211222389999999999995542 48
Q ss_pred HHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCc-eeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 164 MSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGT-RAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 164 ~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
+..+++++.++|||||.+++.+..... ++...... ..+.++.+++.++|+++||+++......
T Consensus 177 ~~~~l~~~~~~LkpgG~li~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 177 YRTALRNLGSLLKPGGFLVMVDALKSS----------------YYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEESSCC----------------EEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred HHHHHHHHHhhCCCCcEEEEEecCCCc----------------eEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 899999999999999999998743321 11121221 2335789999999999999998877654
Q ss_pred c
Q 008457 243 K 243 (564)
Q Consensus 243 ~ 243 (564)
.
T Consensus 241 ~ 241 (265)
T 2i62_A 241 Q 241 (265)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-18 Score=158.90 Aligned_cols=153 Identities=20% Similarity=0.220 Sum_probs=122.8
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~ 142 (564)
..+.+.+...++.+|||+|||+|.++..+++.+ |..+|+|+|+|+.+++.|+++....+ .++.+.++|+... ++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~ 102 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI----PL 102 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBC----SS
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccC----CC
Confidence 344455555788999999999999999999985 67899999999999999998865433 4799999998643 45
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHH
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
++++||+|++..+++|++ ++..+++++.++|||||.+++.++...... .......+++.+
T Consensus 103 ~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------------------~~~~~~~~~~~~ 162 (219)
T 3dh0_A 103 PDNTVDFIFMAFTFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKEERD------------------KGPPPEEVYSEW 162 (219)
T ss_dssp CSSCEEEEEEESCGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSSCCS------------------SSCCGGGSCCHH
T ss_pred CCCCeeEEEeehhhhhcC--CHHHHHHHHHHHhCCCeEEEEEEecccccc------------------cCCchhcccCHH
Confidence 778999999999999995 778999999999999999999876654320 011122356899
Q ss_pred HHHHHHHhCCCcEEEeeee
Q 008457 223 FLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~ 241 (564)
++.++++++||+++.....
T Consensus 163 ~~~~~l~~~Gf~~~~~~~~ 181 (219)
T 3dh0_A 163 EVGLILEDAGIRVGRVVEV 181 (219)
T ss_dssp HHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEee
Confidence 9999999999998876443
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=153.92 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=116.0
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
+.+.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+ .++.+.++|+... ++ ++
T Consensus 24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~-~~ 96 (199)
T 2xvm_A 24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL----TF-DR 96 (199)
T ss_dssp HHHHTTTSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGC----CC-CC
T ss_pred HHHHhhccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhC----CC-CC
Confidence 334444567789999999999999999988 6799999999999999998765433 3789999998643 33 67
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+||+|++..+++|++++++..+++++.++|||||.+++.++....... ......+.++.+++.
T Consensus 97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~ 159 (199)
T 2xvm_A 97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-----------------CTVGFPFAFKEGELR 159 (199)
T ss_dssp CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC-----------------CCSCCSCCBCTTHHH
T ss_pred CceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC-----------------CCCCCCCccCHHHHH
Confidence 899999999999998788999999999999999998886554322100 011122356899999
Q ss_pred HHHHhCCCcEEEeeee
Q 008457 226 SLFKENGFDVEELGLC 241 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~~ 241 (564)
++|++ |+++.....
T Consensus 160 ~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 160 RYYEG--WERVKYNED 173 (199)
T ss_dssp HHTTT--SEEEEEECC
T ss_pred HHhcC--CeEEEeccc
Confidence 99976 988876543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=154.79 Aligned_cols=182 Identities=16% Similarity=0.175 Sum_probs=131.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..++.. ++.+|+|+|+|+.+++.|+++....+.++.+.++|+... ++++++||+|++.
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v~~~ 96 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL----PFKDESMSFVYSY 96 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSC----CSCTTCEEEEEEC
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhC----CCCCCceeEEEEc
Confidence 56889999999999985444433 377999999999999999988655556789999998653 4567899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeec---CCCceeeccCHHHHHHHHHh
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVR---GDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~ 230 (564)
.+++|++.+++..+++++.++|||||.+++.++...+.... ....+....+.. .......+++.+++.++|++
T Consensus 97 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 172 (209)
T 2p8j_A 97 GTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYN----KGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKD 172 (209)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTT----CSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTT
T ss_pred ChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhcc----chhhhccccceeccCCCceeEEecCHHHHHHHHhh
Confidence 99999987889999999999999999999998776442211 001111111211 11223357899999999999
Q ss_pred CCCcEEEeeeeeccccccccccccceeEEEEEEEecCC
Q 008457 231 NGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGG 268 (564)
Q Consensus 231 aGf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 268 (564)
+||...+....... ..+....+.|....+.+.+.
T Consensus 173 ~g~~~~~~~~~~~~----~~g~~~~~~f~~~~~~~~~~ 206 (209)
T 2p8j_A 173 MKVLFKEDRVVERI----NDGLKIKQGYVDYIAEKFSK 206 (209)
T ss_dssp SEEEEEEEEEEEEE----ETTEEEEEEEEEEEEECCCC
T ss_pred cCceeeeeeeeehh----hcCCcccceeeeeehhhhhh
Confidence 99987765433321 22223346677777777543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.3e-19 Score=171.15 Aligned_cols=167 Identities=22% Similarity=0.240 Sum_probs=121.9
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSR 140 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 140 (564)
.+...+.......++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.|+++....+ .++.+.+.|+...
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---- 99 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL---- 99 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC----
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC----
Confidence 33344444444478899999999999999999999888999999999999999998865433 4799999998643
Q ss_pred CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch-------hhhhhcccccccccceeecCCC
Q 008457 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL-------AQERLTGKDQKISENFYVRGDG 213 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 213 (564)
++++++||+|++..+++|++ ++..+++++.++|||||.+++.+...... ......... .. ....
T Consensus 100 ~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ 170 (276)
T 3mgg_A 100 PFEDSSFDHIFVCFVLEHLQ--SPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCL---IR----VQAY 170 (276)
T ss_dssp CSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHH---HH----HHHH
T ss_pred CCCCCCeeEEEEechhhhcC--CHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHH---HH----HHHh
Confidence 45788999999999999995 66799999999999999999987543211 000000000 00 0000
Q ss_pred ceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 214 TRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 214 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
.....++..++..+|+++||+++.+...
T Consensus 171 ~~~~~~~~~~l~~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 171 MKGNSLVGRQIYPLLQESGFEKIRVEPR 198 (276)
T ss_dssp TTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred cCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence 0011245688999999999998876544
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=159.81 Aligned_cols=159 Identities=17% Similarity=0.234 Sum_probs=116.9
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+.++.+.++|+... +++ ++||+|++..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~-~~fD~v~~~~ 109 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL----NIN-RKFDLITCCL 109 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC----CCS-CCEEEEEECT
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccC----Ccc-CCceEEEEcC
Confidence 7889999999999999999888 67899999999999999988754445789999988643 234 7899999998
Q ss_pred -cccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcc-------------ccc-----ccc--cceeecCC
Q 008457 155 -VLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG-------------KDQ-----KIS--ENFYVRGD 212 (564)
Q Consensus 155 -vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~-------------~~~-----~~~--~~~~~~~~ 212 (564)
+++|++ ++++..+++++.++|||||.+++..+........ +.. +.. .+. ..++...+
T Consensus 110 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (246)
T 1y8c_A 110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQV-LGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDG 188 (246)
T ss_dssp TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTT-TTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhh-cCcceEEecCCcEEEEEecccCCceEEEEEEEEEecC
Confidence 999994 4688999999999999999999976553221100 000 000 000 00000011
Q ss_pred C--------ceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 213 G--------TRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 213 ~--------~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
+ .+..+++.+++.++|+++||+++++...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 189 EFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp SSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred CcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 1 1234679999999999999999887544
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=164.95 Aligned_cols=161 Identities=16% Similarity=0.085 Sum_probs=121.1
Q ss_pred HHHhhhc----cCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccc
Q 008457 65 KEWGRYF----SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDL 138 (564)
Q Consensus 65 ~~~~~~l----~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~ 138 (564)
..+.+.+ ...++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++....+ .++++.++|+...
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-- 144 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-- 144 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC--
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC--
Confidence 3444455 55788999999999999999999875 5699999999999999998764332 5799999998643
Q ss_pred cCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeec
Q 008457 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFY 218 (564)
Q Consensus 139 ~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (564)
++++++||+|++..+++|++ ++..+++++.++|||||.+++.++........... ..+...+ ....+
T Consensus 145 --~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~ 211 (297)
T 2o57_A 145 --PCEDNSYDFIWSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI---QPILDRI------KLHDM 211 (297)
T ss_dssp --SSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG---HHHHHHH------TCSSC
T ss_pred --CCCCCCEeEEEecchhhhcC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHH---HHHHHHh------cCCCC
Confidence 56788999999999999996 58899999999999999999987654321111000 0000000 01123
Q ss_pred cCHHHHHHHHHhCCCcEEEeeee
Q 008457 219 FSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 219 ~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
.+.+++.++++++||+++.....
T Consensus 212 ~~~~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 212 GSLGLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCeEEEEEEC
Confidence 58999999999999998876543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=165.50 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=123.4
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC----CCeeEEEecCCcccccC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE----TRVSTFVCDLISDDLSR 140 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~----~~i~~~~~d~~~~~~~~ 140 (564)
..+.+.+. .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ .+++++++|+...
T Consensus 73 ~~~~~~~~-~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~---- 145 (299)
T 3g2m_A 73 REFATRTG-PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF---- 145 (299)
T ss_dssp HHHHHHHC-CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC----
T ss_pred HHHHHhhC-CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC----
Confidence 44444554 34459999999999999999988 6789999999999999999876544 6799999999753
Q ss_pred CCCCCceeEEEEc-ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccc---------cccccc-----
Q 008457 141 QISPSSIDIVTMV-FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGK---------DQKISE----- 205 (564)
Q Consensus 141 ~~~~~~fD~V~~~-~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~---------~~~~~~----- 205 (564)
++ +++||+|++. .+++|+++++...+|+++.++|||||.|++.+++............ ...+..
T Consensus 146 ~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 224 (299)
T 3g2m_A 146 AL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA 224 (299)
T ss_dssp CC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred Cc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence 22 6789999864 6788888778899999999999999999998877654311100000 000000
Q ss_pred ------ceeecC--------CCceeeccCHHHHHHHHHhCCCcEEEeeeeec
Q 008457 206 ------NFYVRG--------DGTRAFYFSNDFLTSLFKENGFDVEELGLCCK 243 (564)
Q Consensus 206 ------~~~~~~--------~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 243 (564)
.++... ...+.++++.+++.++|+++||+++.+.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~ 276 (299)
T 3g2m_A 225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFAS 276 (299)
T ss_dssp EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECT
T ss_pred ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCC
Confidence 000000 01223368999999999999999998766543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-18 Score=165.26 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=122.0
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~ 143 (564)
..+.+.+...++.+|||||||+|.++..+++.. .+|+|+|+|+.|++.|+++....+ .++.+.++|+... +++
T Consensus 27 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l----~~~ 100 (260)
T 1vl5_A 27 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM----PFT 100 (260)
T ss_dssp HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC----CSC
T ss_pred HHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC----CCC
Confidence 344455555788999999999999999999884 599999999999999998764333 4689999998643 567
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhh-hhhcccccccccceeecCCCceeeccCHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ-ERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
+++||+|+++.+++|++ ++..+|+++.++|||||.+++.++..+.... ..+....... ....+..+++.+
T Consensus 101 ~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 171 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKE-------RDYSHHRAWKKS 171 (260)
T ss_dssp TTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHH-------HCTTCCCCCBHH
T ss_pred CCCEEEEEEhhhhHhcC--CHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHh-------cCccccCCCCHH
Confidence 88999999999999995 7789999999999999999998655432211 1111111000 011223356899
Q ss_pred HHHHHHHhCCCcEEEeeeee
Q 008457 223 FLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~~ 242 (564)
++.++|+++||+++......
T Consensus 172 ~~~~~l~~aGf~~~~~~~~~ 191 (260)
T 1vl5_A 172 DWLKMLEEAGFELEELHCFH 191 (260)
T ss_dssp HHHHHHHHHTCEEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEEee
Confidence 99999999999988765543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=165.51 Aligned_cols=205 Identities=15% Similarity=0.205 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChH
Q 008457 31 PFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPR 110 (564)
Q Consensus 31 ~~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~ 110 (564)
+.+.+.|+..+..||+............-..++...+.... ..++.+|||||||+|.++..+++.. ..+|+|+|+|+.
T Consensus 21 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~ 98 (298)
T 1ri5_A 21 EEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLY-TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEV 98 (298)
T ss_dssp --------------------CCSHHHHHHHHHHHHHHHHHH-CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHH
T ss_pred HHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHh-CCCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHH
Confidence 34566788887777654221100000001122222222222 2678999999999999999988873 459999999999
Q ss_pred HHHHHHhcccccC--CCeeEEEecCCcccccCCC-CCCceeEEEEcccccC--CChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 111 AVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI-SPSSIDIVTMVFVLSA--VSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 111 ~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~-~~~~fD~V~~~~vl~~--~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+++.|+++....+ .++.+.++|+... ++ ++++||+|++..++|| .+..++..+++++.++|||||.+++.+
T Consensus 99 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 99 SINDARVRARNMKRRFKVFFRAQDSYGR----HMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp HHHHHHHHHHTSCCSSEEEEEESCTTTS----CCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCccEEEEECCcccc----ccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999998865433 4689999998654 33 5789999999999988 556788999999999999999999988
Q ss_pred cCCCchhhh----hhcc-----------ccccccccee---ec--CCCceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 186 YAIGDLAQE----RLTG-----------KDQKISENFY---VR--GDGTRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 186 ~~~~~~~~~----~~~~-----------~~~~~~~~~~---~~--~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
+........ .+.. ....+....+ .. ....+.++++.+++.++++++||+++.....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 175 PSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp ECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred CCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 664322110 0000 0000000001 00 1123345789999999999999999877543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=162.34 Aligned_cols=161 Identities=17% Similarity=0.232 Sum_probs=111.8
Q ss_pred HHHhhhccC--CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC------------------
Q 008457 65 KEWGRYFSG--AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET------------------ 124 (564)
Q Consensus 65 ~~~~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~------------------ 124 (564)
..+.+.+.. .++.+|||||||+|.++..++. .++.+|+|+|+|+.|++.|+++......
T Consensus 59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (289)
T 2g72_A 59 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 137 (289)
T ss_dssp HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred HHHHHHhCCCCCCCCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence 344444432 3778999999999995544433 2367999999999999999875432110
Q ss_pred -------------CeeEEEecCCc-cccc-CCCCCCceeEEEEcccccCCCh--hHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 125 -------------RVSTFVCDLIS-DDLS-RQISPSSIDIVTMVFVLSAVSP--EKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 125 -------------~i~~~~~d~~~-~~~~-~~~~~~~fD~V~~~~vl~~~~~--~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.++++.+|+.. ..+. ..+++++||+|+++.+++|++. .++..+|++++++|||||.|++....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~ 217 (289)
T 2g72_A 138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL 217 (289)
T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 13466668764 2111 1245678999999999999653 48999999999999999999997422
Q ss_pred CCchhhhhhcccccccccceeecCCCc-eeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 188 IGDLAQERLTGKDQKISENFYVRGDGT-RAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
.. .++...... ...+++.+++.++|+++||+++......
T Consensus 218 ~~----------------~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 218 EE----------------SWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp SC----------------CEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred Cc----------------ceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 11 122222222 1336799999999999999998876654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=165.21 Aligned_cols=145 Identities=17% Similarity=0.255 Sum_probs=107.9
Q ss_pred HHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHH
Q 008457 37 YEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVM 116 (564)
Q Consensus 37 y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~ 116 (564)
++..+.++|+.++...... ...+...+.+.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~ 96 (293)
T 3thr_A 23 ADGEAARVWQLYIGDTRSR----TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYAL 96 (293)
T ss_dssp TTCHHHHHHHHHHTCCSCB----CHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred cCchHHHHHHHHHhcCcch----HHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHH
Confidence 4455667888776433221 2223334444454467899999999999999999998 669999999999999998
Q ss_pred hcccc-----cCCCeeEEEecCCcccccCCCCCCceeEEEEc-ccccCCCh-----hHHHHHHHHHHhccCCCeEEEEEe
Q 008457 117 THKDF-----TETRVSTFVCDLISDDLSRQISPSSIDIVTMV-FVLSAVSP-----EKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 117 ~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~-~vl~~~~~-----~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++... ...++.+..+|+....... +++++||+|+|. .+++|++. +++..++++++++|||||++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 97 KERWNRRKEPAFDKWVIEEANWLTLDKDV-PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp HHHHHTTTSHHHHTCEEEECCGGGHHHHS-CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HhhhhcccccccceeeEeecChhhCcccc-ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 76421 1245778888875432000 467899999998 89999975 569999999999999999999987
Q ss_pred cCC
Q 008457 186 YAI 188 (564)
Q Consensus 186 ~~~ 188 (564)
++.
T Consensus 176 ~~~ 178 (293)
T 3thr_A 176 RNY 178 (293)
T ss_dssp ECH
T ss_pred CCH
Confidence 654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=156.28 Aligned_cols=159 Identities=12% Similarity=0.164 Sum_probs=116.0
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC------CCeeEEEecCCcccccCCCC
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE------TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~------~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+...++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.|+++....+ .++++.++|+... +.+
T Consensus 24 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~ 99 (217)
T 3jwh_A 24 ALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ----DKR 99 (217)
T ss_dssp HHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC----CGG
T ss_pred HHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc----ccc
Confidence 333367889999999999999999998777899999999999999998865332 2799999998533 335
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF 223 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (564)
.++||+|++..+++|++..+...+++++.++|||||.+++...... ...+.. +... ......+.+.++.++
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~---~~~~~~----~~~~--~~~~~~~~~~~~~~~ 170 (217)
T 3jwh_A 100 FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEY---NVKFAN----LPAG--KLRHKDHRFEWTRSQ 170 (217)
T ss_dssp GCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHH---HHHTC-----------------CCSCBCHHH
T ss_pred CCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCccc---chhhcc----cccc--cccccccccccCHHH
Confidence 5799999999999999877779999999999999997776543211 011100 0000 001123344578999
Q ss_pred HH----HHHHhCCCcEEEeeee
Q 008457 224 LT----SLFKENGFDVEELGLC 241 (564)
Q Consensus 224 l~----~~l~~aGf~~~~~~~~ 241 (564)
+. ++++++||+++.....
T Consensus 171 l~~~~~~~~~~~Gf~v~~~~~g 192 (217)
T 3jwh_A 171 FQNWANKITERFAYNVQFQPIG 192 (217)
T ss_dssp HHHHHHHHHHHSSEEEEECCCS
T ss_pred HHHHHHHHHHHcCceEEEEecC
Confidence 98 8999999988765443
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-18 Score=165.70 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=120.2
Q ss_pred chhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC
Q 008457 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 61 ~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 140 (564)
..+...+.+.+...++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.|+++. ++.+.++|+...
T Consensus 20 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~d~~~~---- 88 (261)
T 3ege_A 20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP-----QVEWFTGYAENL---- 88 (261)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-----TEEEECCCTTSC----
T ss_pred HHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-----CCEEEECchhhC----
Confidence 34555666667667899999999999999999987 4789999999999999887664 789999998643
Q ss_pred CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccC
Q 008457 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFS 220 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (564)
++++++||+|++..+++|+ .++..++++++++|| ||.+++.++................. ....+..+.+
T Consensus 89 ~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 158 (261)
T 3ege_A 89 ALPDKSVDGVISILAIHHF--SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFL-------WEDALRFLPL 158 (261)
T ss_dssp CSCTTCBSEEEEESCGGGC--SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHH-------HHHHHTSCCH
T ss_pred CCCCCCEeEEEEcchHhhc--cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHH-------hhhhhhhCCC
Confidence 4678899999999999999 478899999999999 99988887764321110000000000 0111123457
Q ss_pred HHHHHHHHHhCCCcEEEeeeeecc
Q 008457 221 NDFLTSLFKENGFDVEELGLCCKQ 244 (564)
Q Consensus 221 ~~~l~~~l~~aGf~~~~~~~~~~~ 244 (564)
.+++. +++++||..+.......+
T Consensus 159 ~~~~~-~l~~aGF~~v~~~~~~~p 181 (261)
T 3ege_A 159 DEQIN-LLQENTKRRVEAIPFLLP 181 (261)
T ss_dssp HHHHH-HHHHHHCSEEEEEECCEE
T ss_pred HHHHH-HHHHcCCCceeEEEecCC
Confidence 78888 999999998876555433
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.2e-18 Score=160.69 Aligned_cols=162 Identities=16% Similarity=0.156 Sum_probs=122.9
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~ 143 (564)
..+.+.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ .++.+.++|+... +++
T Consensus 11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~ 84 (239)
T 1xxl_A 11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL----PFP 84 (239)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC----CSC
T ss_pred chHHHHhCcCCCCEEEEEccCcCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC----CCC
Confidence 34445566688999999999999999999888 4589999999999999998764333 4789999998542 467
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhh-hhhcccccccccceeecCCCceeeccCHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ-ERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
+++||+|++..+++|++ ++..+++++.++|||||.+++.+........ ..+....... ....+...++.+
T Consensus 85 ~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 155 (239)
T 1xxl_A 85 DDSFDIITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRL-------RDPSHVRESSLS 155 (239)
T ss_dssp TTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHH-------HCTTCCCCCBHH
T ss_pred CCcEEEEEECCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHh-------ccccccCCCCHH
Confidence 88999999999999995 7889999999999999999998765433211 1111110000 112233456899
Q ss_pred HHHHHHHhCCCcEEEeeee
Q 008457 223 FLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~ 241 (564)
++.++|+++||+++.....
T Consensus 156 ~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 156 EWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEEee
Confidence 9999999999998876554
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-17 Score=156.11 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=119.7
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCc-EEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDV-FVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 143 (564)
..+.+.+...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|+++... .++.+.++|+... +++
T Consensus 33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~----~~~ 104 (243)
T 3bkw_A 33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD--TGITYERADLDKL----HLP 104 (243)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGGC----CCC
T ss_pred HHHHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc--CCceEEEcChhhc----cCC
Confidence 34555666578899999999999999999988 45 999999999999999988653 4789999998643 356
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhh--hc-c-ccc---cccccee---e----
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQER--LT-G-KDQ---KISENFY---V---- 209 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~--~~-~-~~~---~~~~~~~---~---- 209 (564)
+++||+|++..+++|++ ++..+++++.++|||||.+++.++.+....... +. . ... .+...+. .
T Consensus 105 ~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (243)
T 3bkw_A 105 QDSFDLAYSSLALHYVE--DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDW 182 (243)
T ss_dssp TTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTH
T ss_pred CCCceEEEEeccccccc--hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeee
Confidence 78999999999999995 688999999999999999999875421100000 00 0 000 0000000 0
Q ss_pred cCCCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 210 RGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
.....+.++++.+++.++|+++||+++.+..
T Consensus 183 ~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~ 213 (243)
T 3bkw_A 183 LAKGVVKHHRTVGTTLNALIRSGFAIEHVEE 213 (243)
T ss_dssp HHHSCCEEECCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccCceEEEeccHHHHHHHHHHcCCEeeeecc
Confidence 0012233456899999999999999987654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=154.91 Aligned_cols=159 Identities=15% Similarity=0.229 Sum_probs=116.0
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC------CCeeEEEecCCcccccCCCC
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE------TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~------~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+...++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.|+++....+ .++++.++|+... +++
T Consensus 24 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~ 99 (219)
T 3jwg_A 24 VLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR----DKR 99 (219)
T ss_dssp HHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC----CGG
T ss_pred HHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc----ccc
Confidence 333367889999999999999999988766899999999999999998865332 2799999998533 335
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF 223 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (564)
.++||+|++..+++|++..+...+++++.++|||||.++......... .+ ..+... ......+.+.++.++
T Consensus 100 ~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~---~~----~~~~~~--~~~~~~~~~~~~~~~ 170 (219)
T 3jwg_A 100 FSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNF---HY----GNLFEG--NLRHRDHRFEWTRKE 170 (219)
T ss_dssp GTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGG---CC----CCT-------GGGCCTTSBCHHH
T ss_pred cCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhh---hh----cccCcc--cccccCceeeecHHH
Confidence 689999999999999987677899999999999999666543321110 00 000000 001123334578999
Q ss_pred HH----HHHHhCCCcEEEeeee
Q 008457 224 LT----SLFKENGFDVEELGLC 241 (564)
Q Consensus 224 l~----~~l~~aGf~~~~~~~~ 241 (564)
+. ++++++||++......
T Consensus 171 l~~~~~~l~~~~Gf~v~~~~~g 192 (219)
T 3jwg_A 171 FQTWAVKVAEKYGYSVRFLQIG 192 (219)
T ss_dssp HHHHHHHHHHHHTEEEEEEEES
T ss_pred HHHHHHHHHHHCCcEEEEEecC
Confidence 98 8899999988765443
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=161.70 Aligned_cols=156 Identities=17% Similarity=0.173 Sum_probs=108.6
Q ss_pred CCCCeEEEEcCCccccHHH----HHHhCCCcEE--EEEeCChHHHHHHHhccccc--CCCeeEEEecCCccccc----CC
Q 008457 74 AGRKDVLEVGCGAGNTIFP----LIAAYPDVFV--YACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLS----RQ 141 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~----l~~~~~~~~v--~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~----~~ 141 (564)
.++.+|||||||+|.++.. ++..+++..| +|+|+|+.|++.|+++.... ..++.+...+...+.+. .+
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 5678999999999976643 3444567754 99999999999999886432 24555544333322222 13
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCH
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (564)
+++++||+|++..++||++ ++..+|++++++|||||.+++............+......+. ...+..+++.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 201 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFP-------QDDLCQYITS 201 (292)
T ss_dssp TCCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSC-------CCTTCCCCCH
T ss_pred cCCCceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhcc-------CCCcccCCCH
Confidence 5678999999999999995 788999999999999999999876543322111111111110 1112345789
Q ss_pred HHHHHHHHhCCCcEEEe
Q 008457 222 DFLTSLFKENGFDVEEL 238 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~~ 238 (564)
+++.++|+++||+++..
T Consensus 202 ~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999988753
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=162.04 Aligned_cols=165 Identities=21% Similarity=0.194 Sum_probs=122.6
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~ 142 (564)
..+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+ .++.+.++|+... ++
T Consensus 51 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~ 125 (273)
T 3bus_A 51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL----PF 125 (273)
T ss_dssp HHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC----CS
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC----CC
Confidence 344455555788999999999999999999876 7899999999999999998765433 4699999998653 45
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHH
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
++++||+|++..+++|++ ++..+++++.++|||||.+++.++............... .++. ......+++.+
T Consensus 126 ~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~ 197 (273)
T 3bus_A 126 EDASFDAVWALESLHHMP--DRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVD----AFRA--GGGVLSLGGID 197 (273)
T ss_dssp CTTCEEEEEEESCTTTSS--CHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHH----HHHH--HHTCCCCCCHH
T ss_pred CCCCccEEEEechhhhCC--CHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHH----HHHh--hcCccCCCCHH
Confidence 788999999999999995 678999999999999999999876533211000000000 0000 00122356899
Q ss_pred HHHHHHHhCCCcEEEeeeee
Q 008457 223 FLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~~ 242 (564)
++.++++++||+++......
T Consensus 198 ~~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 198 EYESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHcCCeEEEEEECc
Confidence 99999999999998765543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=158.84 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=117.1
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
..+.+.+...++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.++++ ..++.+.++|+... + ++
T Consensus 23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~----~~~~~~~~~d~~~~----~-~~ 93 (259)
T 2p35_A 23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----LPNTNFGKADLATW----K-PA 93 (259)
T ss_dssp HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----STTSEEEECCTTTC----C-CS
T ss_pred HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CCCcEEEECChhhc----C-cc
Confidence 344555555778999999999999999999988888999999999999999887 24789999998642 3 56
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccc-c--ccccceeecCCCceeeccCH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKD-Q--KISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~ 221 (564)
++||+|+++.+++|++ ++..++++++++|||||.+++.++.............. . .....+ .........+++.
T Consensus 94 ~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 170 (259)
T 2p35_A 94 QKADLLYANAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAF-SGGGLRRKPLPPP 170 (259)
T ss_dssp SCEEEEEEESCGGGST--THHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC--------CCCCCH
T ss_pred CCcCEEEEeCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHh-ccccccccCCCCH
Confidence 8899999999999994 78899999999999999999988654321111111000 0 000000 0000112346799
Q ss_pred HHHHHHHHhCCCcEE
Q 008457 222 DFLTSLFKENGFDVE 236 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~ 236 (564)
+++.++|+++||++.
T Consensus 171 ~~~~~~l~~aGf~v~ 185 (259)
T 2p35_A 171 SDYFNALSPKSSRVD 185 (259)
T ss_dssp HHHHHHHGGGEEEEE
T ss_pred HHHHHHHHhcCCceE
Confidence 999999999999754
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=161.61 Aligned_cols=162 Identities=16% Similarity=0.178 Sum_probs=119.2
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+.+...++.+|||||||+|.++..+++ ++.+|+|+|+|+.|++.|+++. .++.+.++|+... ++ ++
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~----~~-~~ 116 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY----PHLHFDVADARNF----RV-DK 116 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC----TTSCEEECCTTTC----CC-SS
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC----CCCEEEECChhhC----Cc-CC
Confidence 344455557889999999999999999988 4889999999999999998875 4688999998642 33 57
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhh--hhhcccccccccceeecCCCceeeccCHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ--ERLTGKDQKISENFYVRGDGTRAFYFSNDF 223 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (564)
+||+|++..+++|++ ++..++++++++|||||.+++..+....... ..+.......... + .....+..+++.++
T Consensus 117 ~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 192 (279)
T 3ccf_A 117 PLDAVFSNAMLHWVK--EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIH-N-PQALNPWYFPSIGE 192 (279)
T ss_dssp CEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCC-C-GGGGCCCCCCCHHH
T ss_pred CcCEEEEcchhhhCc--CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCc-c-ccCcCceeCCCHHH
Confidence 899999999999995 7889999999999999999998876543211 1111000000000 0 00111223568999
Q ss_pred HHHHHHhCCCcEEEeeeee
Q 008457 224 LTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 224 l~~~l~~aGf~~~~~~~~~ 242 (564)
+.++|+++||+++......
T Consensus 193 ~~~~l~~aGf~~~~~~~~~ 211 (279)
T 3ccf_A 193 YVNILEKQGFDVTYAALFN 211 (279)
T ss_dssp HHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEEec
Confidence 9999999999988765543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=157.07 Aligned_cols=105 Identities=12% Similarity=0.210 Sum_probs=89.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE-
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (564)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++. .++.+.++|+... ++ +++||+|+|
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~~----~~-~~~~D~v~~~ 107 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL----PDATLHQGDMRDF----RL-GRKFSAVVSM 107 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC----TTCEEEECCTTTC----CC-SSCEEEEEEC
T ss_pred CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC----CCCEEEECCHHHc----cc-CCCCcEEEEc
Confidence 577899999999999999999984 48999999999999999875 3588999998643 22 578999996
Q ss_pred cccccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 153 VFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 153 ~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
..+++|++ .+++..++++++++|||||.+++.++...
T Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 108 FSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred CchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 44999985 46888999999999999999999876554
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=157.42 Aligned_cols=162 Identities=18% Similarity=0.218 Sum_probs=116.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCC-CCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS-PSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~~fD~V~~ 152 (564)
.++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.|+++.. ..++.++++|+.......++. ...||+|++
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC--CTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc--ccCceEEECcccccccccccccccCccEEEE
Confidence 6788999999999999999999854 89999999999999998873 347999999997643321121 124899999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhc-ccccccccc-eeecCCCceeeccCHHHHHHHHHh
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT-GKDQKISEN-FYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
..++||++.+++..++++++++|||||++++.++.........-. ......... ......+.....++.+++.++|
T Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 208 (245)
T 3ggd_A 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF-- 208 (245)
T ss_dssp ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--
T ss_pred cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--
Confidence 999999988889999999999999999999988876542211100 000000000 0000112222346899999999
Q ss_pred CCCcEEEeeee
Q 008457 231 NGFDVEELGLC 241 (564)
Q Consensus 231 aGf~~~~~~~~ 241 (564)
+||+++.....
T Consensus 209 aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 PDFEILSQGEG 219 (245)
T ss_dssp TTEEEEEEECC
T ss_pred CCCEEEecccc
Confidence 99999876543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=162.40 Aligned_cols=162 Identities=16% Similarity=0.163 Sum_probs=120.2
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~ 144 (564)
+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+ .++.+..+|+.. + +
T Consensus 56 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~----~- 127 (287)
T 1kpg_A 56 ALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ--F----D- 127 (287)
T ss_dssp HHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG--C----C-
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh--C----C-
Confidence 3444555788999999999999999999654 5699999999999999998865433 478999998843 2 3
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhc---------ccccccccceeecCCCce
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT---------GKDQKISENFYVRGDGTR 215 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 215 (564)
++||+|++..+++|++.+++..+++++.++|||||.+++.++........... .....+....+ ..
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 202 (287)
T 1kpg_A 128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIF-----PG 202 (287)
T ss_dssp CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTS-----TT
T ss_pred CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeC-----CC
Confidence 78999999999999987788999999999999999999988765443221000 00000000000 01
Q ss_pred eeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 216 AFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 216 ~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
..+.+.+++.++++++||+++.....
T Consensus 203 ~~~~s~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 203 GRLPSIPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp CCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCCCCHHHHHHHHHhCCcEEEEEEeC
Confidence 12358999999999999999876543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-17 Score=157.99 Aligned_cols=152 Identities=19% Similarity=0.186 Sum_probs=113.8
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++......++.+.++|+... ++++++||+|++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v~~ 110 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI----PLPDESVHGVIV 110 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSC----CSCTTCEEEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccC----CCCCCCeeEEEE
Confidence 367899999999999999999887 68999999999999999988743446899999998543 457889999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCC--ch---hhhhhcccccccccceeecCCCceeeccCHHHHHHH
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIG--DL---AQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
..++||++ ++..+++++.++|||||.+++. +... .. ....+........ +. ...+..+++.+++.++
T Consensus 111 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~ 182 (263)
T 2yqz_A 111 VHLWHLVP--DWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEG---FP--VERGLHAKRLKEVEEA 182 (263)
T ss_dssp ESCGGGCT--THHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHT---CC--CCCCHHHHHHHHHHHH
T ss_pred CCchhhcC--CHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhC---CC--cccccccCCHHHHHHH
Confidence 99999995 6889999999999999999987 2221 11 0011111000000 00 1112235689999999
Q ss_pred HHhCCCcEEEe
Q 008457 228 FKENGFDVEEL 238 (564)
Q Consensus 228 l~~aGf~~~~~ 238 (564)
++++||+++..
T Consensus 183 l~~~Gf~~~~~ 193 (263)
T 2yqz_A 183 LRRLGLKPRTR 193 (263)
T ss_dssp HHHTTCCCEEE
T ss_pred HHHcCCCcceE
Confidence 99999997654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-17 Score=157.43 Aligned_cols=156 Identities=13% Similarity=0.151 Sum_probs=117.6
Q ss_pred HHhhhcc-CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC
Q 008457 66 EWGRYFS-GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 66 ~~~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~ 142 (564)
.+.+.+. ..++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|+++....+ .+++++++|+... ++
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~ 110 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL----PF 110 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC----CC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC----CC
Confidence 3344443 467899999999999999999988 57799999999999999998865433 5699999999643 45
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch-hhhhhcccccccccceeecCCCceeeccCH
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL-AQERLTGKDQKISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (564)
++++||+|++..+++|+ ++..+++++.++|||||.+++.++..... ....... ++. .....+.+.
T Consensus 111 ~~~~fD~i~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~ 176 (267)
T 3kkz_A 111 RNEELDLIWSEGAIYNI---GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEIND--------FWM---DAYPEIDTI 176 (267)
T ss_dssp CTTCEEEEEESSCGGGT---CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHH--------HHH---HHCTTCEEH
T ss_pred CCCCEEEEEEcCCceec---CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHH--------HHH---HhCCCCCCH
Confidence 67899999999999999 46789999999999999999987642110 0000000 000 001123478
Q ss_pred HHHHHHHHhCCCcEEEeee
Q 008457 222 DFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~~~~ 240 (564)
+++.++++++||+++....
T Consensus 177 ~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 177 PNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp HHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEE
Confidence 9999999999999987644
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=152.20 Aligned_cols=108 Identities=17% Similarity=0.260 Sum_probs=91.2
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+.++.+.++|+... ++ .++||+|++
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~----~~-~~~fD~v~~ 111 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI----AF-KNEFDAVTM 111 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC----CC-CSCEEEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhc----cc-CCCccEEEE
Confidence 356789999999999999999987 77999999999999999988765556789999998653 22 368999999
Q ss_pred c-ccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 153 V-FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 153 ~-~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
. ..++|++.+++..+++++.++|+|||.+++..++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 7 4567777778999999999999999999986543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=157.88 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=119.8
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCC
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~ 141 (564)
...+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+ .++.+.++|+... +
T Consensus 25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~----~ 99 (256)
T 1nkv_A 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY----V 99 (256)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC----C
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC----C
Confidence 3444555566788999999999999999999886 6799999999999999998865433 4799999998643 3
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchh-hhhhcccccccccceeecCCCceeeccC
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLA-QERLTGKDQKISENFYVRGDGTRAFYFS 220 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (564)
+ +++||+|++..+++|++ ++..+|++++++|||||.+++.++...... ...+. ..+. ......+++
T Consensus 100 ~-~~~fD~V~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~ 166 (256)
T 1nkv_A 100 A-NEKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIA-------QACG---VSSTSDFLT 166 (256)
T ss_dssp C-SSCEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHH-------HTTT---CSCGGGSCC
T ss_pred c-CCCCCEEEECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHH-------HHHh---cccccccCC
Confidence 3 68899999999999995 678999999999999999999875422110 00000 0000 112223568
Q ss_pred HHHHHHHHHhCCCcEEEee
Q 008457 221 NDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 221 ~~~l~~~l~~aGf~~~~~~ 239 (564)
.+++.++++++||+++...
T Consensus 167 ~~~~~~~l~~aGf~~~~~~ 185 (256)
T 1nkv_A 167 LPGLVGAFDDLGYDVVEMV 185 (256)
T ss_dssp HHHHHHHHHTTTBCCCEEE
T ss_pred HHHHHHHHHHCCCeeEEEE
Confidence 9999999999999987654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=154.82 Aligned_cols=154 Identities=10% Similarity=0.088 Sum_probs=115.6
Q ss_pred Hhhhc-cCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCC
Q 008457 67 WGRYF-SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 67 ~~~~l-~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~ 143 (564)
+.+.+ ...++.+|||||||+|.++..+++.++. +|+|+|+|+.+++.|+++....+ .+++++++|+... +++
T Consensus 37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~ 111 (257)
T 3f4k_A 37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL----PFQ 111 (257)
T ss_dssp HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC----SSC
T ss_pred HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC----CCC
Confidence 33444 3467889999999999999999999754 99999999999999998865433 4599999999543 457
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch-hhhhhcccccccccceeecCCCceeeccCHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL-AQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
+++||+|++..+++|+ ++..+++++.++|||||++++.++..... ........... ....+.+.+
T Consensus 112 ~~~fD~v~~~~~l~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 177 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNI---GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMD-----------AYPEISVIP 177 (257)
T ss_dssp TTCEEEEEEESCSCCC---CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHH-----------HCTTCCBHH
T ss_pred CCCEEEEEecChHhhc---CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHH-----------hCCCCCCHH
Confidence 8899999999999999 47789999999999999999987531110 00000000000 001134799
Q ss_pred HHHHHHHhCCCcEEEee
Q 008457 223 FLTSLFKENGFDVEELG 239 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~ 239 (564)
++.++++++||+++...
T Consensus 178 ~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 178 TCIDKMERAGYTPTAHF 194 (257)
T ss_dssp HHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEE
Confidence 99999999999998753
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-17 Score=157.50 Aligned_cols=102 Identities=21% Similarity=0.340 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
..+.+|||||||+|.++..|++. +.+|+|+|+|+.|++.|+++ .++.+.++|+... ++++++||+|++.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~~-----~~v~~~~~~~e~~----~~~~~sfD~v~~~ 106 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALRH-----PRVTYAVAPAEDT----GLPPASVDVAIAA 106 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCCC-----TTEEEEECCTTCC----CCCSSCEEEEEEC
T ss_pred CCCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhhc-----CCceeehhhhhhh----cccCCcccEEEEe
Confidence 45679999999999999999987 67899999999999887653 4789999998643 5689999999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
.++||++ +..+++++.|+|||||.|++..+...
T Consensus 107 ~~~h~~~---~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 107 QAMHWFD---LDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp SCCTTCC---HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred eehhHhh---HHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 9999984 56799999999999999999876543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=164.43 Aligned_cols=159 Identities=16% Similarity=0.263 Sum_probs=113.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC------------------------------
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE------------------------------ 123 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~------------------------------ 123 (564)
.++.+|||||||+|.++..+++.+++.+|+|+|+|+.|++.|+++.....
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 36899999999999999999999888899999999999999998754321
Q ss_pred -----------------------------CCeeEEEecCCcccc-cCCCCCCceeEEEEcccccCC----ChhHHHHHHH
Q 008457 124 -----------------------------TRVSTFVCDLISDDL-SRQISPSSIDIVTMVFVLSAV----SPEKMSLVLQ 169 (564)
Q Consensus 124 -----------------------------~~i~~~~~d~~~~~~-~~~~~~~~fD~V~~~~vl~~~----~~~~~~~~l~ 169 (564)
.+++|.++|+..... ..++..++||+|+|..+++|+ +++++..+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 479999999865431 113467899999999999887 4558899999
Q ss_pred HHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHh--CCCcEEEeeee
Q 008457 170 NIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKE--NGFDVEELGLC 241 (564)
Q Consensus 170 ~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--aGf~~~~~~~~ 241 (564)
+++++|||||+|++......... . ...+....+ .......+.++++..+|.+ +||+.++....
T Consensus 205 ~~~~~LkpGG~lil~~~~~~~y~--~----~~~~~~~~~---~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQPWSSYG--K----RKTLTETIY---KNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHEEEEEEEEEECCCHHHHH--T----TTTSCHHHH---HHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHhCCCcEEEEecCCchhhh--h----hhcccHHHH---hhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999998643321110 0 011110000 0001113467899999998 99988775443
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.9e-17 Score=145.19 Aligned_cols=135 Identities=19% Similarity=0.233 Sum_probs=109.6
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
...++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++ ..++++...| .++++++||+|+
T Consensus 14 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----~~~v~~~~~d-------~~~~~~~~D~v~ 80 (170)
T 3i9f_A 14 FEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK----FDSVITLSDP-------KEIPDNSVDFIL 80 (170)
T ss_dssp HSSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH----CTTSEEESSG-------GGSCTTCEEEEE
T ss_pred CcCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh----CCCcEEEeCC-------CCCCCCceEEEE
Confidence 34678899999999999999999884 4999999999999999987 3478888887 145788999999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
+..+++|++ ++..+++++.++|||||.+++.++....... .......++.+++.++++
T Consensus 81 ~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~-- 138 (170)
T 3i9f_A 81 FANSFHDMD--DKQHVISEVKRILKDDGRVIIIDWRKENTGI------------------GPPLSIRMDEKDYMGWFS-- 138 (170)
T ss_dssp EESCSTTCS--CHHHHHHHHHHHEEEEEEEEEEEECSSCCSS------------------SSCGGGCCCHHHHHHHTT--
T ss_pred Eccchhccc--CHHHHHHHHHHhcCCCCEEEEEEcCcccccc------------------CchHhhhcCHHHHHHHHh--
Confidence 999999995 7889999999999999999998776533110 011122468999999998
Q ss_pred CCcEEEeeee
Q 008457 232 GFDVEELGLC 241 (564)
Q Consensus 232 Gf~~~~~~~~ 241 (564)
||++++....
T Consensus 139 Gf~~~~~~~~ 148 (170)
T 3i9f_A 139 NFVVEKRFNP 148 (170)
T ss_dssp TEEEEEEECS
T ss_pred CcEEEEccCC
Confidence 9998876543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-17 Score=150.41 Aligned_cols=139 Identities=21% Similarity=0.266 Sum_probs=110.2
Q ss_pred hHhHHHHHHhhcc----ccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHh
Q 008457 42 KKYWDLFYKRHQD----RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMT 117 (564)
Q Consensus 42 ~~ywd~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~ 117 (564)
.+||+.+|..... .++.....+...+.+.+ .++.+|||+|||+|.++..+++.++. +|+|+|+|+.+++.|++
T Consensus 7 ~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~ 83 (215)
T 2pxx_A 7 VEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQA 83 (215)
T ss_dssp HHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHH
T ss_pred hhHHHHHhccCCCCCCcccccCHHHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHH
Confidence 5789998877642 34444444444554544 67889999999999999999988433 89999999999999998
Q ss_pred cccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCC-------------hhHHHHHHHHHHhccCCCeEEEEE
Q 008457 118 HKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVS-------------PEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 118 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~-------------~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+... ..++.+.++|+... ++++++||+|++..+++++. ..++..+++++.++|||||.+++.
T Consensus 84 ~~~~-~~~i~~~~~d~~~~----~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 158 (215)
T 2pxx_A 84 CYAH-VPQLRWETMDVRKL----DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISM 158 (215)
T ss_dssp HTTT-CTTCEEEECCTTSC----CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hccc-CCCcEEEEcchhcC----CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEE
Confidence 8753 35789999998653 45678999999998887664 457789999999999999999998
Q ss_pred ecCC
Q 008457 185 DYAI 188 (564)
Q Consensus 185 ~~~~ 188 (564)
++..
T Consensus 159 ~~~~ 162 (215)
T 2pxx_A 159 TSAA 162 (215)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 7664
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=148.87 Aligned_cols=159 Identities=17% Similarity=0.226 Sum_probs=119.2
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+.+. .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. ++.++|+.... .+++++
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~~------~~~~~d~~~~~--~~~~~~ 92 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKLD------HVVLGDIETMD--MPYEEE 92 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTSS------EEEESCTTTCC--CCSCTT
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCC------cEEEcchhhcC--CCCCCC
Confidence 3444454 67899999999999999999888 5899999999999999987753 67788886432 356778
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeec----CCCceeeccCH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVR----GDGTRAFYFSN 221 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 221 (564)
+||+|++..+++|++ ++..+++++.++|+|||.+++.++.........-. ....+... ....+..+++.
T Consensus 93 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 165 (230)
T 3cc8_A 93 QFDCVIFGDVLEHLF--DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPL-----LAGNWTYTEYGLLDKTHIRFFTF 165 (230)
T ss_dssp CEEEEEEESCGGGSS--CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHH-----HTTCCCCBSSSTTBTTCCCCCCH
T ss_pred ccCEEEECChhhhcC--CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHH-----hcCCceeccCCCCCcceEEEecH
Confidence 999999999999995 66799999999999999999988775543211100 00000000 11233446799
Q ss_pred HHHHHHHHhCCCcEEEeeeee
Q 008457 222 DFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~~~~~~ 242 (564)
+++.++++++||+++......
T Consensus 166 ~~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 166 NEMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHcCCeEEEEEecc
Confidence 999999999999998766543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-17 Score=159.98 Aligned_cols=165 Identities=14% Similarity=0.209 Sum_probs=113.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC-------CeeEEEecCCccc----ccCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-------RVSTFVCDLISDD----LSRQI 142 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~-------~i~~~~~d~~~~~----~~~~~ 142 (564)
.++.+|||||||+|..+..++... +.+|+|+|+|+.|++.|+++...... +++|.+.|+.... +..++
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 457899999999998777666653 57899999999999999988653332 2568888874322 23345
Q ss_pred CCCceeEEEEcccccCC-ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcc-----ccc--------ccc---c
Q 008457 143 SPSSIDIVTMVFVLSAV-SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG-----KDQ--------KIS---E 205 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~-~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~-----~~~--------~~~---~ 205 (564)
++++||+|+|..++||+ ..++...++++++++|||||++++.+++....... +.. ... .+. .
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ 204 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKL-TDKKTFIIHKNLPSSENYMSVEKIAD 204 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTC-CSCEEEECCSSSCTTTSEEEECEEET
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHH-HhcCCcccccccccccceeeeccccc
Confidence 67899999999999875 33467899999999999999999987753222110 000 000 000 0
Q ss_pred -c--ee-ecC--CCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 206 -N--FY-VRG--DGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 206 -~--~~-~~~--~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
. .+ +.. .....++++.+++.++++++||+++....
T Consensus 205 ~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~ 245 (302)
T 2vdw_A 205 DRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVD 245 (302)
T ss_dssp TEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecC
Confidence 0 01 111 12233577889999999999999987643
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=156.97 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=121.7
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~ 144 (564)
+.+.+...++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|+++....+ .++++.++|+.. + +
T Consensus 64 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~-~ 135 (302)
T 3hem_A 64 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE------F-D 135 (302)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG------C-C
T ss_pred HHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH------c-C
Confidence 34445557889999999999999999998863 799999999999999998865433 478999999853 2 6
Q ss_pred CceeEEEEcccccCC-------ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccc---------ccccccee
Q 008457 145 SSIDIVTMVFVLSAV-------SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKD---------QKISENFY 208 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~-------~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~---------~~~~~~~~ 208 (564)
++||+|++..+++|+ +.++...+++++.++|||||.+++.++.............. ..+....+
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 799999999999999 44677899999999999999999988776543322111000 00000001
Q ss_pred ecCCCceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 209 VRGDGTRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
......+.+++.++++++||+++.....
T Consensus 216 -----p~~~~~s~~~~~~~l~~aGf~~~~~~~~ 243 (302)
T 3hem_A 216 -----PGGRLPRISQVDYYSSNAGWKVERYHRI 243 (302)
T ss_dssp -----TTCCCCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred -----CCCCCCCHHHHHHHHHhCCcEEEEEEeC
Confidence 1112457999999999999999877554
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=147.40 Aligned_cols=143 Identities=18% Similarity=0.208 Sum_probs=110.1
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
++.+|||+|||+|.++..+++. +|+|+|+.+++.++++ ++.+.++|+... ++++++||+|++..
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~------~~~~~~~d~~~~----~~~~~~fD~v~~~~ 110 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR------GVFVLKGTAENL----PLKDESFDFALMVT 110 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT------TCEEEECBTTBC----CSCTTCEEEEEEES
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc------CCEEEEcccccC----CCCCCCeeEEEEcc
Confidence 3889999999999999877543 9999999999999886 578888888543 45678999999999
Q ss_pred cccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCc
Q 008457 155 VLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFD 234 (564)
Q Consensus 155 vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 234 (564)
+++|++ ++..+++++.++|+|||.+++.++.........+.... .... ...+..+++.+++.++|+++||+
T Consensus 111 ~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~l~~~l~~~Gf~ 181 (219)
T 1vlm_A 111 TICFVD--DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNK--EKSV-----FYKNARFFSTEELMDLMRKAGFE 181 (219)
T ss_dssp CGGGSS--CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTT--TC-C-----CSTTCCCCCHHHHHHHHHHTTCE
T ss_pred hHhhcc--CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHh--cCcc-----hhcccccCCHHHHHHHHHHCCCe
Confidence 999995 67899999999999999999998776543322221110 0000 01123357999999999999999
Q ss_pred EEEeeeee
Q 008457 235 VEELGLCC 242 (564)
Q Consensus 235 ~~~~~~~~ 242 (564)
++......
T Consensus 182 ~~~~~~~~ 189 (219)
T 1vlm_A 182 EFKVVQTL 189 (219)
T ss_dssp EEEEEEEC
T ss_pred EEEEeccc
Confidence 98866544
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=151.67 Aligned_cols=160 Identities=17% Similarity=0.267 Sum_probs=114.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|+++....+.++++.++|+... +++ ++||+|++.
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~-~~fD~v~~~ 103 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMREL----ELP-EPVDAITIL 103 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGC----CCS-SCEEEEEEC
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhc----CCC-CCcCEEEEe
Confidence 45689999999999999988776 6899999999999999988765556789999998643 223 789999998
Q ss_pred c-cccCC-ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh----hhcc--------cccc---------cccceeec
Q 008457 154 F-VLSAV-SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE----RLTG--------KDQK---------ISENFYVR 210 (564)
Q Consensus 154 ~-vl~~~-~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~----~~~~--------~~~~---------~~~~~~~~ 210 (564)
. +++|+ +.+++..+++++.++|||||.+++..+........ .+.. +... ....++..
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (243)
T 3d2l_A 104 CDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIE 183 (243)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEE
T ss_pred CCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEE
Confidence 6 99998 45788899999999999999999876543211000 0000 0000 00001100
Q ss_pred -CCC--------ceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 211 -GDG--------TRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 211 -~~~--------~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
..+ .+..+++.+++.++|+++||+++.+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 223 (243)
T 3d2l_A 184 GEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGD 223 (243)
T ss_dssp CTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEET
T ss_pred cCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecC
Confidence 011 1224679999999999999999887543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-17 Score=160.56 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=96.0
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
...++.+|||||||+|.++..+++.+| +.+|+|+|+|+.+++.|+++....+.++++.++|+... ++ +++||+|
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~----~~-~~~fD~v 93 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI----EL-NDKYDIA 93 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC----CC-SSCEEEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc----Cc-CCCeeEE
Confidence 446789999999999999999999877 48999999999999999998765566899999999753 33 4689999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++..+++|++ ++..++++++++|||||++++.++.
T Consensus 94 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 94 ICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EECChhhcCC--CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 9999999995 6789999999999999999998876
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=162.70 Aligned_cols=162 Identities=19% Similarity=0.215 Sum_probs=120.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++....+ .+++++.+|+..... |++ ++||+|+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~p-~~~D~v~ 253 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDV--PFP-TGFDAVW 253 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSC--CCC-CCCSEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCC--CCC-CCcCEEE
Confidence 4678999999999999999999999999999999 999999998865433 579999999975421 234 7899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
+..++|++++++...+|++++++|||||++++.+...+.................+. .........++.++|.++|+++
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~ll~~A 332 (363)
T 3dp7_A 254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFT-AMANGNSKMFHSDDLIRCIENA 332 (363)
T ss_dssp EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHH-HSSCSSCCSCCHHHHHHHHHTT
T ss_pred EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHH-hhhCCCCcccCHHHHHHHHHHc
Confidence 999999999888889999999999999999998876543211100000000000000 0011112245899999999999
Q ss_pred CCcEEEeee
Q 008457 232 GFDVEELGL 240 (564)
Q Consensus 232 Gf~~~~~~~ 240 (564)
||+++++..
T Consensus 333 Gf~~v~~~~ 341 (363)
T 3dp7_A 333 GLEVEEIQD 341 (363)
T ss_dssp TEEESCCCC
T ss_pred CCeEEEEEe
Confidence 999887643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-17 Score=166.44 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=117.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhccccc---------CCCeeEEEecCCcccc--cCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT---------ETRVSTFVCDLISDDL--SRQ 141 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~---------~~~i~~~~~d~~~~~~--~~~ 141 (564)
.++.+|||||||+|.++..+++.. ++.+|+|+|+|+.+++.|+++.... ..+++++++|+..... ..+
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 578999999999999999999874 6789999999999999999875422 2689999999975421 115
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCH
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (564)
+++++||+|+++.+++|++ ++..+|++++++|||||+|++.++............. . ..+ .......++.
T Consensus 162 ~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-~----~~~---~~~~~~~~~~ 231 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLST--NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQD-P----ILY---GECLGGALYL 231 (383)
T ss_dssp CCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHC-H----HHH---HTTCTTCCBH
T ss_pred CCCCCEEEEEEccchhcCC--CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhh-H----HHh---hcccccCCCH
Confidence 6788999999999999995 6889999999999999999998765432111111000 0 000 0011123578
Q ss_pred HHHHHHHHhCCCcEEEeee
Q 008457 222 DFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~~~~ 240 (564)
+++.++|+++||+.+++..
T Consensus 232 ~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 232 EDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHCCCceEEEEe
Confidence 9999999999998776544
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=158.39 Aligned_cols=158 Identities=11% Similarity=0.099 Sum_probs=119.6
Q ss_pred hhcc-CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCC
Q 008457 69 RYFS-GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 69 ~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
+.+. ..++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|+++....+ .++++.++|+... +++++
T Consensus 110 ~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~ 184 (312)
T 3vc1_A 110 DHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT----PFDKG 184 (312)
T ss_dssp TTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC----CCCTT
T ss_pred HHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC----CCCCC
Confidence 3444 4678999999999999999999875 6799999999999999998865443 4799999999643 45788
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+||+|++..+++|++ +..+++++.++|||||.+++.++........ .......+...+ ...+++.+++.
T Consensus 185 ~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~s~~~~~ 253 (312)
T 3vc1_A 185 AVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQ-PSKWVSQINAHF-------ECNIHSRREYL 253 (312)
T ss_dssp CEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCS-CCHHHHHHHHHH-------TCCCCBHHHHH
T ss_pred CEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccc-hhHHHHHHHhhh-------cCCCCCHHHHH
Confidence 999999999999993 8899999999999999999987654432100 000000000000 01245899999
Q ss_pred HHHHhCCCcEEEeeeee
Q 008457 226 SLFKENGFDVEELGLCC 242 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~~~ 242 (564)
++++++||+++......
T Consensus 254 ~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 254 RAMADNRLVPHTIVDLT 270 (312)
T ss_dssp HHHHTTTEEEEEEEECH
T ss_pred HHHHHCCCEEEEEEeCC
Confidence 99999999998776543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-16 Score=142.02 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=118.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++.. ++.+.+.|+... ++++++||+|++.
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~----~~~~~~~d~~~~----~~~~~~~D~i~~~ 114 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP----EARWVVGDLSVD----QISETDFDLIVSA 114 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTS----CCCCCCEEEEEEC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC----CCcEEEcccccC----CCCCCceeEEEEC
Confidence 57889999999999999999988 6799999999999999998763 588899998653 3467899999998
Q ss_pred -ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 154 -FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 154 -~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
.+++|++.++...+++++.++|+|||.+++...... .++.+++.++++++|
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~----------------------------~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 115 GNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR----------------------------GWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS----------------------------SCCHHHHHHHHHHHT
T ss_pred CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC----------------------------CcCHHHHHHHHHHcC
Confidence 789999877889999999999999999998754321 137899999999999
Q ss_pred CcEEEeeeeeccccccccccccceeEEEEEEEe
Q 008457 233 FDVEELGLCCKQVENRARELVMNRRWVQAVFCS 265 (564)
Q Consensus 233 f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (564)
|+++............. ...|+...++|
T Consensus 167 f~~~~~~~~~~~~~~~~-----~~~~~~~v~~k 194 (195)
T 3cgg_A 167 LELENAFESWDLKPFVQ-----GSEFLVAVFTK 194 (195)
T ss_dssp EEEEEEESSTTCCBCCT-----TCSEEEEEEEE
T ss_pred CEEeeeecccccCcCCC-----CCcEEEEEEec
Confidence 99987655433222211 13455555655
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=156.26 Aligned_cols=170 Identities=14% Similarity=0.141 Sum_probs=119.5
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChH------HHHHHHhcccccC--CCeeEEEec-CCccc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPR------AVNLVMTHKDFTE--TRVSTFVCD-LISDD 137 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~------~l~~a~~~~~~~~--~~i~~~~~d-~~~~~ 137 (564)
.+.+...++.+|||||||+|.++..+++.+ |..+|+|+|+|+. +++.|+++....+ .++++.++| +....
T Consensus 36 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 115 (275)
T 3bkx_A 36 AEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDL 115 (275)
T ss_dssp HHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCC
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhcc
Confidence 344445788999999999999999999884 6689999999997 9999988865433 578999887 43332
Q ss_pred ccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccccccc----ceeecCCC
Q 008457 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISE----NFYVRGDG 213 (564)
Q Consensus 138 ~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 213 (564)
+ ++++++||+|++..+++|++ ++..+++.+.++++|||.+++.++................+.. ........
T Consensus 116 ~--~~~~~~fD~v~~~~~l~~~~--~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (275)
T 3bkx_A 116 G--PIADQHFDRVVLAHSLWYFA--SANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVA 191 (275)
T ss_dssp G--GGTTCCCSEEEEESCGGGSS--CHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTC
T ss_pred C--CCCCCCEEEEEEccchhhCC--CHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccc
Confidence 2 56788999999999999996 4455777778888889999998876543211110000000000 00011112
Q ss_pred ceeeccCHHHHHHHHHhCCCcEEEeeee
Q 008457 214 TRAFYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 214 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
....+++.+++.++++++||+++.....
T Consensus 192 ~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 192 NIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp SCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 2233679999999999999999876554
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-16 Score=154.54 Aligned_cols=162 Identities=12% Similarity=0.103 Sum_probs=121.2
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+.+.+...++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++....+ .++.+.++|+.. + +
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~----~ 153 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--F----A 153 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG--C----C
T ss_pred HHHHhcCCCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH--C----C
Confidence 33444555788999999999999999999875 6799999999999999998865433 468999998853 2 2
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcc---------cccccccceeecCCCc
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG---------KDQKISENFYVRGDGT 214 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 214 (564)
++||+|++..+++|++.+++..+++++.++|||||.+++.++............ ....+....+ .
T Consensus 154 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 227 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIF---P-- 227 (318)
T ss_dssp -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTS---T--
T ss_pred -CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcC---C--
Confidence 789999999999999877899999999999999999999988765532211000 0000000000 0
Q ss_pred eeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 215 RAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 215 ~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
...+.+.+++.++++++||+++....
T Consensus 228 ~~~~~s~~~~~~~l~~aGf~~~~~~~ 253 (318)
T 2fk8_A 228 GGRLPSTEMMVEHGEKAGFTVPEPLS 253 (318)
T ss_dssp TCCCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred CCcCCCHHHHHHHHHhCCCEEEEEEe
Confidence 11235899999999999999887544
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=158.19 Aligned_cols=152 Identities=18% Similarity=0.108 Sum_probs=117.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++....+ .++++..+|+. . +++. +||+|+
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~----~~p~-~~D~v~ 240 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-D----PLPA-GAGGYV 240 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-S----CCCC-SCSEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-C----CCCC-CCcEEE
Confidence 4578999999999999999999999999999999 999999998765433 67999999986 2 2344 899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
+..++||+++++...+|++++++|+|||++++.+...+.......... .+... .....++.++|.++++++
T Consensus 241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~------~~~~~---~~~~~~t~~e~~~ll~~a 311 (332)
T 3i53_A 241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDL------RMLTY---FGGKERSLAELGELAAQA 311 (332)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHH------HHHHH---HSCCCCCHHHHHHHHHHT
T ss_pred EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHH------HHHhh---CCCCCCCHHHHHHHHHHC
Confidence 999999998777899999999999999999999876654200000000 00000 111235899999999999
Q ss_pred CCcEEEeeee
Q 008457 232 GFDVEELGLC 241 (564)
Q Consensus 232 Gf~~~~~~~~ 241 (564)
||+++++...
T Consensus 312 Gf~~~~~~~~ 321 (332)
T 3i53_A 312 GLAVRAAHPI 321 (332)
T ss_dssp TEEEEEEEEC
T ss_pred CCEEEEEEEC
Confidence 9999876543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-16 Score=145.07 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++.++ +++|+|+|+.+++.|+++....+.++++.++|+... ++++++||+|+++
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~~ 110 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL----SFEDKTFDYVIFI 110 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC----CSCTTCEEEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcC----CCCCCcEEEEEEc
Confidence 3488999999999999999998854 899999999999999988765557899999998653 3467899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.++++.+..++..+++++.++|||||.+++.++.
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 111 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 9966666578899999999999999999998765
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=156.31 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=117.4
Q ss_pred CCCCeEEEEcCCccccHHHHH-HhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLI-AAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~-~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||||||+|.++..++ ...|+.+|+|+|+|+.+++.|+++....+ .+++++++|+... +++ ++||+|
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~-~~fD~v 191 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL----DTR-EGYDLL 191 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC----CCC-SCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC----Ccc-CCeEEE
Confidence 678999999999999999885 45678999999999999999999876443 3599999998653 345 899999
Q ss_pred EEcccccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccc-cccc-------ceeecC-CCceeeccC
Q 008457 151 TMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQ-KISE-------NFYVRG-DGTRAFYFS 220 (564)
Q Consensus 151 ~~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~-~~~~~~~~~ 220 (564)
+++.+++|++ +.....+++++.++|||||++++.++.......... .+.. .... ..+... ......+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
T 3ocj_A 192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDS-PWDMQAIDPHDLQLQQLVFTRLIQPRWNALRT 270 (305)
T ss_dssp ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTC-CCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccc-cceeeccccchhhhhhhHHHHHHhhhhhccCC
Confidence 9999999996 444456899999999999999998866543211100 0000 0000 000000 111123579
Q ss_pred HHHHHHHHHhCCCcEEEeee
Q 008457 221 NDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 221 ~~~l~~~l~~aGf~~~~~~~ 240 (564)
.+++.++++++||+++.+..
T Consensus 271 ~~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 271 HAQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEEc
Confidence 99999999999999987764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-16 Score=151.39 Aligned_cols=144 Identities=19% Similarity=0.277 Sum_probs=113.5
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+.++++.++|+... ++ +++||+|
T Consensus 116 ~~~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~-~~~fD~i 188 (286)
T 3m70_A 116 AKIISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAA----NI-QENYDFI 188 (286)
T ss_dssp HHHSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGC----CC-CSCEEEE
T ss_pred hhccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccc----cc-cCCccEE
Confidence 33357899999999999999999998 67999999999999999998765555899999998643 22 6889999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
+++.+++|+++.+...+++++.++|+|||.+++......... .......+.++.+++.+++..
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 189 VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDV-----------------PCPLPFSFTFAENELKEYYKD 251 (286)
T ss_dssp EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSS-----------------CCSSCCSCCBCTTHHHHHTTT
T ss_pred EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCC-----------------CCCCCccccCCHHHHHHHhcC
Confidence 999999999888889999999999999999887654332110 001122335688999999865
Q ss_pred CCCcEEEeee
Q 008457 231 NGFDVEELGL 240 (564)
Q Consensus 231 aGf~~~~~~~ 240 (564)
|+++....
T Consensus 252 --~~~~~~~~ 259 (286)
T 3m70_A 252 --WEFLEYNE 259 (286)
T ss_dssp --SEEEEEEC
T ss_pred --CEEEEEEc
Confidence 88876543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=142.48 Aligned_cols=113 Identities=21% Similarity=0.267 Sum_probs=95.9
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCce
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
...+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.... .++++.++|+.... ++++|
T Consensus 44 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~-----~~~~f 115 (216)
T 3ofk_A 44 RLSLSSGAVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRW-SHISWAATDILQFS-----TAELF 115 (216)
T ss_dssp HHHTTTSSEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTC-SSEEEEECCTTTCC-----CSCCE
T ss_pred HHHcccCCCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccC-CCeEEEEcchhhCC-----CCCCc
Confidence 33455577899999999999999999888 579999999999999999987643 38999999986532 57899
Q ss_pred eEEEEcccccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 148 DIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 148 D~V~~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
|+|+++.+++|++ ++....+++++.++|||||.+++.++..
T Consensus 116 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 116 DLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp EEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred cEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9999999999997 3566789999999999999999987643
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=157.63 Aligned_cols=159 Identities=17% Similarity=0.215 Sum_probs=120.7
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+.+...+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++.... ..++++..+|+. . +++.
T Consensus 195 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~----~~p~- 267 (369)
T 3gwz_A 195 AAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-E----TIPD- 267 (369)
T ss_dssp HHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-T----CCCS-
T ss_pred HHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-C----CCCC-
Confidence 3344446789999999999999999999999999999999 99999999876533 367999999986 2 3344
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+||+|++..++|++++++...+|+++++.|+|||++++.+...+...... .. . ....+... .....++.++|.
T Consensus 268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~-~--~d~~~~~~---~~g~~~t~~e~~ 340 (369)
T 3gwz_A 268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TL-F--VDLLLLVL---VGGAERSESEFA 340 (369)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HH-H--HHHHHHHH---HSCCCBCHHHHH
T ss_pred CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hh-H--hhHHHHhh---cCCccCCHHHHH
Confidence 89999999999999877777999999999999999999887654421111 00 0 00000000 011235899999
Q ss_pred HHHHhCCCcEEEeee
Q 008457 226 SLFKENGFDVEELGL 240 (564)
Q Consensus 226 ~~l~~aGf~~~~~~~ 240 (564)
++|+++||+++++..
T Consensus 341 ~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 341 ALLEKSGLRVERSLP 355 (369)
T ss_dssp HHHHTTTEEEEEEEE
T ss_pred HHHHHCCCeEEEEEE
Confidence 999999999988744
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=148.63 Aligned_cols=154 Identities=21% Similarity=0.288 Sum_probs=114.7
Q ss_pred CCCCeEEEEcCCc---cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCccccc-------CCCC
Q 008457 74 AGRKDVLEVGCGA---GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLS-------RQIS 143 (564)
Q Consensus 74 ~~~~~VLDiGcG~---G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~-------~~~~ 143 (564)
.+..+|||||||+ |.++..+.+.+|+.+|+++|+|+.|++.|+++... ..+++++++|+...... ..++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-DPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-CTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-CCCeEEEEeeCCCchhhhccchhhccCC
Confidence 4558999999999 98887777778899999999999999999988743 36799999999753210 1133
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch-hhhhhcccccccccceeecCCCceeeccCHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL-AQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
..+||+|+++.+|||++++++..+|++++++|+|||.|++.+...... ....+.. .+.. .+....+++.+
T Consensus 155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~s~~ 225 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLAR--------ITRE-NLGEGWARTPE 225 (274)
T ss_dssp TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHH--------HHHH-HHSCCCCBCHH
T ss_pred CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHH--------HHHh-cCCCCccCCHH
Confidence 358999999999999986678999999999999999999998775320 0011100 0000 01112346999
Q ss_pred HHHHHHHhCCCcEEEee
Q 008457 223 FLTSLFKENGFDVEELG 239 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~ 239 (564)
++..+| .||++++..
T Consensus 226 ei~~~l--~G~~l~~~g 240 (274)
T 2qe6_A 226 EIERQF--GDFELVEPG 240 (274)
T ss_dssp HHHHTT--TTCEECTTC
T ss_pred HHHHHh--CCCeEccCc
Confidence 999999 599887643
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-16 Score=147.80 Aligned_cols=141 Identities=13% Similarity=0.037 Sum_probs=103.9
Q ss_pred hHHHHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHH
Q 008457 32 FWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRA 111 (564)
Q Consensus 32 ~~~~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~ 111 (564)
...+.|+..+..||+..+..+ .......+.+.+...++.+|||||||+|.++..|++. +.+|+|+|+|+.|
T Consensus 9 s~a~~wd~~a~~f~~~~~~~~-------~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~m 79 (261)
T 3iv6_A 9 SKAEAWELIGNQFWTIGRVAA-------RPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRM 79 (261)
T ss_dssp TTHHHHHTTTTHHHHTSCGGG-------SCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHH
T ss_pred hhhhHHHHHHHHHHHHhhccc-------cHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHH
Confidence 345678888888876532111 0122244455566678999999999999999999988 6799999999999
Q ss_pred HHHHHhcccccCCCeeEEEecCCccccc-CCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 112 VNLVMTHKDFTETRVSTFVCDLISDDLS-RQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 112 l~~a~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++.|+++.... .+ ..++...... ....+++||+|+++.+++|++.++...+++++.++| |||.++++...
T Consensus 80 l~~Ar~~~~~~--~v---~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 80 CDDLAEALADR--CV---TIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp HHHHHHHTSSS--CC---EEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred HHHHHHHHHhc--cc---eeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 99999987543 22 2333221110 011257899999999999998888999999999999 99999997643
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=152.28 Aligned_cols=157 Identities=14% Similarity=0.185 Sum_probs=117.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++..+++.+|+.+++++|++ .+++.|+++....+ .++++..+|+... +++. .||+|+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~-~~D~v~ 237 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV----DYGN-DYDLVL 237 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS----CCCS-CEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC----CCCC-CCcEEE
Confidence 67889999999999999999999989999999999 99999998764332 4699999998653 2343 499999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
+..++||+++++...++++++++|+|||++++.++................+ .+.... .....++.++|.++++++
T Consensus 238 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~t~~~~~~ll~~a 313 (335)
T 2r3s_A 238 LPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSL--VMLATT--PNGDAYTFAEYESMFSNA 313 (335)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHH--HHHHHS--SSCCCCCHHHHHHHHHHT
T ss_pred EcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHH--HHHeeC--CCCCcCCHHHHHHHHHHC
Confidence 9999999987788999999999999999999988775432110000000000 000000 012245899999999999
Q ss_pred CCcEEEeee
Q 008457 232 GFDVEELGL 240 (564)
Q Consensus 232 Gf~~~~~~~ 240 (564)
||+.+++..
T Consensus 314 Gf~~~~~~~ 322 (335)
T 2r3s_A 314 GFSHSQLHS 322 (335)
T ss_dssp TCSEEEEEC
T ss_pred CCCeeeEEE
Confidence 999987644
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-16 Score=143.60 Aligned_cols=135 Identities=16% Similarity=0.111 Sum_probs=104.6
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCc-EEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDV-FVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
++.+|||+|||+|.++..+ +. +++|+|+|+.+++.|+++. .++.+.++|+... ++++++||+|++.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~----~~~~~~fD~v~~~ 102 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEAL----PFPGESFDVVLLF 102 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSC----CSCSSCEEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccC----CCCCCcEEEEEEc
Confidence 7889999999999988776 45 8999999999999999876 4678888888643 4577899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
.+++|++ ++..+++++.++|||||.+++.+++.............. .. .....+..+++.+++.++|+ |
T Consensus 103 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 103 TTLEFVE--DVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGE-KG-----VLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp SCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHH-TT-----CTTGGGCCCCCHHHHHHHHC--S
T ss_pred ChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhh-cc-----CccccccccCCHHHHHHHhc--C
Confidence 9999995 788999999999999999999988776543222111000 00 00112344679999999998 7
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=154.32 Aligned_cols=154 Identities=17% Similarity=0.254 Sum_probs=113.2
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++. .+++++.+|+.. +++.+ |+|++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~p~~--D~v~~ 267 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-----SGVEHLGGDMFD-----GVPKG--DAIFI 267 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-----CCCCC--SEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-----CCCEEEecCCCC-----CCCCC--CEEEE
Confidence 35678999999999999999999999999999999 9888777643 579999999864 33544 99999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccccccc-ceeecCCCceeeccCHHHHHHHHHhC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISE-NFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
..++||+++++...+|++++++|||||++++.+...+................ .+..... ....++.++|.++|+++
T Consensus 268 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~g~~rt~~e~~~ll~~A 345 (368)
T 3reo_A 268 KWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNP--GGKERTEKEFQALAMAS 345 (368)
T ss_dssp ESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSS--BCCCCCHHHHHHHHHHT
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcC--CCccCCHHHHHHHHHHC
Confidence 99999999888889999999999999999998876543211000000000000 0000000 11134899999999999
Q ss_pred CCcEEEeeee
Q 008457 232 GFDVEELGLC 241 (564)
Q Consensus 232 Gf~~~~~~~~ 241 (564)
||+.+++...
T Consensus 346 GF~~v~~~~~ 355 (368)
T 3reo_A 346 GFRGFKVASC 355 (368)
T ss_dssp TCCEEEEEEE
T ss_pred CCeeeEEEEe
Confidence 9999877554
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-16 Score=153.29 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=93.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhccccc---CCCeeEEEecCCcccccC--CCCCCce
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLSR--QISPSSI 147 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~---~~~i~~~~~d~~~~~~~~--~~~~~~f 147 (564)
.++.+|||||||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++.... ..+++++++|+....+.. .+..++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 578999999999999999999875 7899999999999999999886544 578999999997643321 1123899
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
|+|++..++||+ ++..+++++.++|||||.+++.++
T Consensus 115 D~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 150 (299)
T 3g5t_A 115 DMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGY 150 (299)
T ss_dssp EEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999999 688999999999999999998443
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=153.30 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=118.4
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+.+.+...++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++....+ .++++..+|+.. +++
T Consensus 173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~ 246 (374)
T 1qzz_A 173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-----PLP 246 (374)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCS
T ss_pred HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-----cCC
Confidence 344444446789999999999999999999998899999999 999999998765333 479999999864 223
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec--CCCchhhhhhcccccccccceeecCCCceeeccCH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY--AIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (564)
. .||+|++..++||++..+...++++++++|||||++++.++ ..+......+..... + .+..... ...++.
T Consensus 247 ~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~-~--~~~~~~~---~~~~~~ 319 (374)
T 1qzz_A 247 V-TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLD-L--RMLTFMG---GRVRTR 319 (374)
T ss_dssp C-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHH-H--HHHHHHS---CCCCCH
T ss_pred C-CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcc-h--HHHHhCC---CcCCCH
Confidence 3 49999999999999866667999999999999999999887 432211111000000 0 0000001 124689
Q ss_pred HHHHHHHHhCCCcEEEeeee
Q 008457 222 DFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~~~~~ 241 (564)
++|.++++++||+++++...
T Consensus 320 ~~~~~ll~~aGf~~~~~~~~ 339 (374)
T 1qzz_A 320 DEVVDLAGSAGLALASERTS 339 (374)
T ss_dssp HHHHHHHHTTTEEEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEEC
Confidence 99999999999999877654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=154.30 Aligned_cols=157 Identities=15% Similarity=0.250 Sum_probs=116.8
Q ss_pred CC-CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AG-RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~-~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.+ +.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++....+ .++++..+|+.... +++.+.||+|
T Consensus 177 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~D~v 252 (352)
T 3mcz_A 177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDAR---NFEGGAADVV 252 (352)
T ss_dssp GTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGG---GGTTCCEEEE
T ss_pred cCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCc---ccCCCCccEE
Confidence 44 89999999999999999999999999999999 889999988764332 47999999987543 1134569999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
++..++||+++++...+|++++++|+|||++++.+...+.............+ .+.....+ ...++.++|.+++++
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~t~~e~~~ll~~ 328 (352)
T 3mcz_A 253 MLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSL--HMMVNTNH--GELHPTPWIAGVVRD 328 (352)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHH--HHHHHSTT--CCCCCHHHHHHHHHH
T ss_pred EEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhH--HHHhhCCC--CCcCCHHHHHHHHHH
Confidence 99999999987788999999999999999999988765432111000000000 00000001 113589999999999
Q ss_pred CCCcEEEe
Q 008457 231 NGFDVEEL 238 (564)
Q Consensus 231 aGf~~~~~ 238 (564)
+||++++.
T Consensus 329 aGf~~~~~ 336 (352)
T 3mcz_A 329 AGLAVGER 336 (352)
T ss_dssp TTCEEEEE
T ss_pred CCCceeee
Confidence 99999873
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=152.85 Aligned_cols=164 Identities=14% Similarity=0.199 Sum_probs=120.8
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+.+.+...++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++.... ..++++..+|+... +++
T Consensus 181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~ 255 (359)
T 1x19_A 181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE----SYP 255 (359)
T ss_dssp HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS----CCC
T ss_pred HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC----CCC
Confidence 333444456789999999999999999999999999999999 99999999876533 24699999998653 233
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCC-ceeeccCHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDG-TRAFYFSND 222 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 222 (564)
+ +|+|++..++||+++++...+|++++++|||||++++.++..++.....+.... .+ +.....+ ....+++.+
T Consensus 256 ~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~-~~---~~~~~~g~~~~~~~t~~ 329 (359)
T 1x19_A 256 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLS-HY---ILGAGMPFSVLGFKEQA 329 (359)
T ss_dssp C--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHH-HH---GGGGGSSCCCCCCCCGG
T ss_pred C--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHH-HH---HHhcCCCCcccCCCCHH
Confidence 3 399999999999987779999999999999999999988665432100000000 00 0000111 112247899
Q ss_pred HHHHHHHhCCCcEEEeee
Q 008457 223 FLTSLFKENGFDVEELGL 240 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~ 240 (564)
+|.++++++||+++++..
T Consensus 330 e~~~ll~~aGf~~v~~~~ 347 (359)
T 1x19_A 330 RYKEILESLGYKDVTMVR 347 (359)
T ss_dssp GHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=153.02 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=113.8
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc--ccCCCeeEEEecCCcccccCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD--FTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
+.+.+...++.+|||||||+|.++..+++.+|+.+++++|+ +.++. +++.. ....++++..+|+. . ++|
T Consensus 176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~-~----~~p- 246 (348)
T 3lst_A 176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL-R----EVP- 246 (348)
T ss_dssp HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT-T----CCC-
T ss_pred HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC-C----CCC-
Confidence 33344446788999999999999999999999999999999 55555 33322 23467999999986 2 234
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFL 224 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (564)
+||+|++..++||+++.+...+|++++++|||||++++.+...+.......... ....+... .....++.++|
T Consensus 247 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~---~d~~~~~~---~~~~~~t~~e~ 319 (348)
T 3lst_A 247 -HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKE---MDFMMLAA---RTGQERTAAEL 319 (348)
T ss_dssp -CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHH---HHHHHHHT---TSCCCCBHHHH
T ss_pred -CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhh---cChhhhhc---CCCcCCCHHHH
Confidence 899999999999998777789999999999999999998875443211100000 00000000 11123589999
Q ss_pred HHHHHhCCCcEEEeee
Q 008457 225 TSLFKENGFDVEELGL 240 (564)
Q Consensus 225 ~~~l~~aGf~~~~~~~ 240 (564)
.++++++||+++++..
T Consensus 320 ~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 320 EPLFTAAGLRLDRVVG 335 (348)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHCCCceEEEEE
Confidence 9999999999987754
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=152.98 Aligned_cols=154 Identities=17% Similarity=0.243 Sum_probs=113.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++. .+++++.+|+.. +++.+ |+|++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-----~~p~~--D~v~~ 265 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-----PGVTHVGGDMFK-----EVPSG--DTILM 265 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-----CCCCC--SEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-----CCeEEEeCCcCC-----CCCCC--CEEEe
Confidence 35679999999999999999999999999999999 8888777643 579999999864 23444 99999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccc-cccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKD-QKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
..++|++++++...+|++++++|||||++++.+...++.......... ......+.....+ ...++.++|.++|+++
T Consensus 266 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~--g~~rt~~e~~~ll~~A 343 (364)
T 3p9c_A 266 KWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPG--GRERYEREFQALARGA 343 (364)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSS--CCCCBHHHHHHHHHHT
T ss_pred hHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccC--CccCCHHHHHHHHHHC
Confidence 999999998888999999999999999999988765432110000000 0000000000001 1124799999999999
Q ss_pred CCcEEEeeee
Q 008457 232 GFDVEELGLC 241 (564)
Q Consensus 232 Gf~~~~~~~~ 241 (564)
||+.+++...
T Consensus 344 GF~~v~~~~~ 353 (364)
T 3p9c_A 344 GFTGVKSTYI 353 (364)
T ss_dssp TCCEEEEEEE
T ss_pred CCceEEEEEc
Confidence 9999887554
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-15 Score=148.34 Aligned_cols=165 Identities=17% Similarity=0.170 Sum_probs=116.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--------CCCeeEEEecCCcccccCCCC--
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--------ETRVSTFVCDLISDDLSRQIS-- 143 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--------~~~i~~~~~d~~~~~~~~~~~-- 143 (564)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++.... ..++.+.++|+....+..+++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 36789999999999999999875 4679999999999999999876432 247899999997654222343
Q ss_pred CCceeEEEEcccccCC--ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcc----ccccc--------------
Q 008457 144 PSSIDIVTMVFVLSAV--SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG----KDQKI-------------- 203 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~--~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~----~~~~~-------------- 203 (564)
+++||+|++..++||+ +.+++..+++++.++|||||.+++..+............ .....
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 191 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLF 191 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSS
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCc
Confidence 4589999999999997 456788999999999999999999887653221110000 00000
Q ss_pred ccc--eee-cCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 204 SEN--FYV-RGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 204 ~~~--~~~-~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
... |.. .......+..+.+.+.+++++.||+++...
T Consensus 192 ~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~ 230 (313)
T 3bgv_A 192 GCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKK 230 (313)
T ss_dssp CCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEE
T ss_pred cceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEec
Confidence 000 000 001122345688999999999999998764
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-15 Score=138.20 Aligned_cols=142 Identities=16% Similarity=0.247 Sum_probs=107.5
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~ 143 (564)
..|.+.+. .++.+|||||||+|.++..+++..|+.+++|+|+|+.+++.|+++....+ .++.++++|+.. +...++
T Consensus 32 ~~~~~~f~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~~ 108 (214)
T 1yzh_A 32 AKWRDLFG-NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD--LTDYFE 108 (214)
T ss_dssp TTHHHHHT-SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC--GGGTSC
T ss_pred cCHHHHcC-CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH--HHhhcC
Confidence 34544443 56889999999999999999999988999999999999999998765433 589999999865 322256
Q ss_pred CCceeEEEEcccccCCChh------HHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceee
Q 008457 144 PSSIDIVTMVFVLSAVSPE------KMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAF 217 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~------~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (564)
+++||+|+++....+.... ....+++++.++|+|||.+++......
T Consensus 109 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------- 160 (214)
T 1yzh_A 109 DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG---------------------------- 160 (214)
T ss_dssp TTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH----------------------------
T ss_pred CCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH----------------------------
Confidence 7899999998765443211 235799999999999999998642210
Q ss_pred ccCHHHHHHHHHhCCCcEEEee
Q 008457 218 YFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 218 ~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
..+.+.+.++++||..+...
T Consensus 161 --~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 161 --LFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp --HHHHHHHHHHHHTCEEEEEE
T ss_pred --HHHHHHHHHHHCCCeeeecc
Confidence 12556678888898876543
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-16 Score=160.27 Aligned_cols=157 Identities=15% Similarity=0.192 Sum_probs=112.3
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
..+.+.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .....+...+.. .+ ++++
T Consensus 97 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~~~--~l--~~~~ 169 (416)
T 4e2x_A 97 RDFLATELTGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREKGIR-VRTDFFEKATAD--DV--RRTE 169 (416)
T ss_dssp HHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTTTCC-EECSCCSHHHHH--HH--HHHH
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHcCCC-cceeeechhhHh--hc--ccCC
Confidence 33444455567899999999999999999987 67999999999999999987211 000001111111 11 3456
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFL 224 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (564)
++||+|++..+++|++ ++..++++++++|||||++++.++.......... .. .+ -..+..+++.+++
T Consensus 170 ~~fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~--~~-----~~----~~~~~~~~s~~~l 236 (416)
T 4e2x_A 170 GPANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTS--FD-----QI----FDEHFFLFSATSV 236 (416)
T ss_dssp CCEEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTC--GG-----GC----STTCCEECCHHHH
T ss_pred CCEEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcc--hh-----hh----hhhhhhcCCHHHH
Confidence 8999999999999995 8899999999999999999998765432211100 00 00 1233446799999
Q ss_pred HHHHHhCCCcEEEeeee
Q 008457 225 TSLFKENGFDVEELGLC 241 (564)
Q Consensus 225 ~~~l~~aGf~~~~~~~~ 241 (564)
.++++++||+++.+...
T Consensus 237 ~~ll~~aGf~~~~~~~~ 253 (416)
T 4e2x_A 237 QGMAQRCGFELVDVQRL 253 (416)
T ss_dssp HHHHHHTTEEEEEEEEE
T ss_pred HHHHHHcCCEEEEEEEc
Confidence 99999999999877654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-16 Score=146.22 Aligned_cols=106 Identities=12% Similarity=0.064 Sum_probs=88.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE-
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (564)
.++.+|||||||+|..+..+++.. ..++++||+|+.+++.|+++....+.++.++.+|+... ..++++++||.|+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV--APTLPDGHFDGILYD 135 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH--GGGSCTTCEEEEEEC
T ss_pred cCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhh--cccccccCCceEEEe
Confidence 688999999999999999988765 45899999999999999998877777888888887432 23568899999985
Q ss_pred ----cccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 153 ----VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 153 ----~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
...++|+ .++..+++++.|+|||||+|++.
T Consensus 136 ~~~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 136 TYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eeecccchhhh--cchhhhhhhhhheeCCCCEEEEE
Confidence 3445566 58889999999999999999874
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=150.53 Aligned_cols=155 Identities=21% Similarity=0.251 Sum_probs=117.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-CCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.+..+|||||||+|.++..+++++|+.+++..|. |.+++.|+++.... ..+++++.+|+... + ...+|+|++
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~----~--~~~~D~~~~ 250 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKD----P--LPEADLYIL 250 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTS----C--CCCCSEEEE
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccC----C--CCCceEEEe
Confidence 5678999999999999999999999999999998 88999999876533 37899999998653 2 235799999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
..+||++++++...+|+++++.|+|||+++|.+...++............+ .+.....+. -.|.++|+++|+++|
T Consensus 251 ~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl--~ml~~~~g~---ert~~e~~~ll~~AG 325 (353)
T 4a6d_A 251 ARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSL--NMLVQTEGQ---ERTPTHYHMLLSSAG 325 (353)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHH--HHHHSSSCC---CCCHHHHHHHHHHHT
T ss_pred eeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHH--HHHHhCCCc---CCCHHHHHHHHHHCC
Confidence 999999998888999999999999999999998765432111100000000 011111222 248999999999999
Q ss_pred CcEEEeee
Q 008457 233 FDVEELGL 240 (564)
Q Consensus 233 f~~~~~~~ 240 (564)
|+.+++..
T Consensus 326 f~~v~v~~ 333 (353)
T 4a6d_A 326 FRDFQFKK 333 (353)
T ss_dssp CEEEEEEC
T ss_pred CceEEEEE
Confidence 99987654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-13 Score=137.04 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=104.3
Q ss_pred EEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEc
Q 008457 328 IEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATD 406 (564)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD 406 (564)
..+.+.+..+++....+.++......| ++++........+.+|||||||+|.++..++..+ ..+|+++|
T Consensus 184 ~~~~~~~~~~~~~~~pg~Fs~~~~d~~----------~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD 253 (375)
T 4dcm_A 184 VSWKLEGTDWTIHNHANVFSRTGLDIG----------ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVD 253 (375)
T ss_dssp EEEEETTTTEEEEECTTCTTCSSCCHH----------HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEecCCceEEEeCCCcccCCcccHH----------HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEE
Confidence 345667777888776666554444444 4555555444566899999999998888888776 57999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeC-----CCChHHHHHHHHHHh
Q 008457 407 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-----PEAILPLFATAKELT 481 (564)
Q Consensus 407 ~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-----~~~~~~l~~~~~~ll 481 (564)
+|+.+++.+++|+..|+... ..++.+...|..+ .+++++||+|+++.+++. ......+++.+.++|
T Consensus 254 ~s~~al~~Ar~n~~~ngl~~-~~~v~~~~~D~~~--------~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~L 324 (375)
T 4dcm_A 254 ESPMAVASSRLNVETNMPEA-LDRCEFMINNALS--------GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCL 324 (375)
T ss_dssp SCHHHHHHHHHHHHHHCGGG-GGGEEEEECSTTT--------TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHE
T ss_pred CcHHHHHHHHHHHHHcCCCc-CceEEEEechhhc--------cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhC
Confidence 99999999999999988631 1235445444432 234568999998877654 223347899999999
Q ss_pred hccCCCCCCCCCcEEEEEEee
Q 008457 482 ASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 482 ~~~~g~~~~~~~~~~~~~~~~ 502 (564)
+|+| .++++...
T Consensus 325 -kpgG--------~l~iv~n~ 336 (375)
T 4dcm_A 325 -KING--------ELYIVANR 336 (375)
T ss_dssp -EEEE--------EEEEEEET
T ss_pred -CCCc--------EEEEEEEC
Confidence 9988 77776543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-15 Score=151.38 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=120.2
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+.+.+...++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++....+ .+++++.+|+.. +++
T Consensus 174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~ 247 (360)
T 1tw3_A 174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-----PLP 247 (360)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCS
T ss_pred HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-----CCC
Confidence 334444446789999999999999999999998999999999 999999998764332 479999999864 223
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC-CCchhhhhhcccccccccceeecCCCceeeccCHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA-IGDLAQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
. .||+|++..++||+++.+...++++++++|+|||++++.++. .++.....+..... + .+..... ...++.+
T Consensus 248 ~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~-~--~~~~~~~---~~~~t~~ 320 (360)
T 1tw3_A 248 R-KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELD-L--RMLVFLG---GALRTRE 320 (360)
T ss_dssp S-CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHH-H--HHHHHHS---CCCCBHH
T ss_pred C-CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhcc-H--HHhhhcC---CcCCCHH
Confidence 3 499999999999998777789999999999999999998876 33211000000000 0 0000001 1245899
Q ss_pred HHHHHHHhCCCcEEEeeee
Q 008457 223 FLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~ 241 (564)
+|.++|+++||+++++...
T Consensus 321 e~~~ll~~aGf~~~~~~~~ 339 (360)
T 1tw3_A 321 KWDGLAASAGLVVEEVRQL 339 (360)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEeC
Confidence 9999999999999876554
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-15 Score=149.74 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=118.6
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+.+.+...+ .+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++.... ..+++++.+|+.. +++
T Consensus 159 ~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~ 231 (334)
T 2ip2_A 159 EIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-----EVP 231 (334)
T ss_dssp HHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-----CCC
T ss_pred HHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-----CCC
Confidence 3334343344 8999999999999999999999999999999 99999999876432 3579999999865 224
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF 223 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (564)
++||+|++..++||+++++...++++++++|+|||++++.+...++........... + .+..... ...++.++
T Consensus 232 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~-~--~~~~~~~---~~~~t~~e 304 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWD-V--HLFMACA---GRHRTTEE 304 (334)
T ss_dssp -SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHH-H--HHHHHHS---CCCCBHHH
T ss_pred -CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhh-h--HhHhhCC---CcCCCHHH
Confidence 579999999999999877778999999999999999999987643311100000000 0 0000001 11348999
Q ss_pred HHHHHHhCCCcEEEeee
Q 008457 224 LTSLFKENGFDVEELGL 240 (564)
Q Consensus 224 l~~~l~~aGf~~~~~~~ 240 (564)
|.++++++||+++++..
T Consensus 305 ~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 305 VVDLLGRGGFAVERIVD 321 (334)
T ss_dssp HHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHCCCceeEEEE
Confidence 99999999999887654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-14 Score=134.82 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=101.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||||||+|..+..++...++.+|+|+|+|+.|++.|+++....+ .+++++++|+...... +..+++||+|++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~V~~ 147 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-KDVRESYDIVTA 147 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-TTTTTCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-ccccCCccEEEE
Confidence 46789999999999999999987788999999999999999998765433 3699999988542210 011578999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
..+ .++..+++++.++|||||.+++....... -..+++.+.++++|
T Consensus 148 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~----------------------------~~~~~~~~~l~~~g 193 (240)
T 1xdz_A 148 RAV------ARLSVLSELCLPLVKKNGLFVALKAASAE----------------------------EELNAGKKAITTLG 193 (240)
T ss_dssp ECC------SCHHHHHHHHGGGEEEEEEEEEEECC-CH----------------------------HHHHHHHHHHHHTT
T ss_pred ecc------CCHHHHHHHHHHhcCCCCEEEEEeCCCch----------------------------HHHHHHHHHHHHcC
Confidence 763 35778999999999999999885321100 02356778899999
Q ss_pred CcEEEeeeee
Q 008457 233 FDVEELGLCC 242 (564)
Q Consensus 233 f~~~~~~~~~ 242 (564)
|.+.......
T Consensus 194 ~~~~~~~~~~ 203 (240)
T 1xdz_A 194 GELENIHSFK 203 (240)
T ss_dssp EEEEEEEEEE
T ss_pred CeEeEEEEEe
Confidence 9988765443
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-15 Score=136.56 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=92.2
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~ 143 (564)
..|.+.+. .++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.|+++....+ .++.++++|+.. +...++
T Consensus 29 ~~~~~~f~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~--l~~~~~ 105 (213)
T 2fca_A 29 GKWNTVFG-NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT--LTDVFE 105 (213)
T ss_dssp TCHHHHHT-SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG--HHHHCC
T ss_pred CCHHHHcC-CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH--HHhhcC
Confidence 34444444 56789999999999999999999999999999999999999998765433 579999999865 221256
Q ss_pred CCceeEEEEcccccCCChh------HHHHHHHHHHhccCCCeEEEEEe
Q 008457 144 PSSIDIVTMVFVLSAVSPE------KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~------~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+++||.|+++....+.... ....+++++.++|||||.+++.+
T Consensus 106 ~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 106 PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 7899999987654433211 13578999999999999999864
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=130.51 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=105.9
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~ 142 (564)
..+.+.+...++.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.|+++....+ .++ ++..|... .+ +.
T Consensus 15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~-~~--~~ 90 (178)
T 3hm2_A 15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR-AF--DD 90 (178)
T ss_dssp HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-GG--GG
T ss_pred HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-hh--hc
Confidence 33444555578889999999999999999998888999999999999999998765433 267 77777643 22 22
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHH
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
..++||+|++..+++| ..+++++.++|||||.+++.+.... +..
T Consensus 91 ~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~ 134 (178)
T 3hm2_A 91 VPDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVTVE------------------------------SEQ 134 (178)
T ss_dssp CCSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECSHH------------------------------HHH
T ss_pred cCCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeeccc------------------------------cHH
Confidence 2378999999999887 3589999999999999998764421 345
Q ss_pred HHHHHHHhCCCcEEEeeee
Q 008457 223 FLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~~~ 241 (564)
.+..++++.|+++..+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ 153 (178)
T 3hm2_A 135 MLWALRKQFGGTISSFAIS 153 (178)
T ss_dssp HHHHHHHHHCCEEEEEEEE
T ss_pred HHHHHHHHcCCeeEEEEee
Confidence 6778888889888776554
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-15 Score=139.00 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE-
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (564)
.++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|+++....+.++.++++|+... ..++++++||+|++
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV--APTLPDGHFDGILYD 135 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH--GGGSCTTCEEEEEEC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHh--hcccCCCceEEEEEC
Confidence 678899999999999999997653 34899999999999999998766567899999998543 22567889999999
Q ss_pred cccc--cCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 153 VFVL--SAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 153 ~~vl--~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.+.+ +.....++..++++++++|||||++++.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 5543 223335667889999999999999998654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-14 Score=134.74 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=104.8
Q ss_pred CCCCeEEEEcCC-ccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCG-AGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+||| +|.++..+++.. +.+|+|+|+|+.+++.|+++....+.+++++++|+... .++++++||+|++
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~I~~ 129 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGII---KGVVEGTFDVIFS 129 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSS---TTTCCSCEEEEEE
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhh---hhcccCceeEEEE
Confidence 678999999999 999999999885 67999999999999999988765555899999997422 1446689999999
Q ss_pred cccccCCCh-----------------hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCce
Q 008457 153 VFVLSAVSP-----------------EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTR 215 (564)
Q Consensus 153 ~~vl~~~~~-----------------~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (564)
+-.+++.+. +....+++++.++|||||.+++......
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------------------- 183 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-------------------------- 183 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH--------------------------
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH--------------------------
Confidence 876655431 2247899999999999999998643211
Q ss_pred eeccCHHHHHHHHHhCCCcEEEeee
Q 008457 216 AFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 216 ~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
...+++.+++++.||.+..+..
T Consensus 184 ---~~~~~~~~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 184 ---KLLNVIKERGIKLGYSVKDIKF 205 (230)
T ss_dssp ---HHHHHHHHHHHHTTCEEEEEEE
T ss_pred ---hHHHHHHHHHHHcCCceEEEEe
Confidence 1357788999999998776644
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-15 Score=145.92 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=86.5
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. . .+.++|+... ++++++||+|++..
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~---~--~~~~~d~~~~----~~~~~~fD~v~~~~ 122 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV---K--NVVEAKAEDL----PFPSGAFEAVLALG 122 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC---S--CEEECCTTSC----CSCTTCEEEEEECS
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC---C--CEEECcHHHC----CCCCCCEEEEEEcc
Confidence 7889999999999999999887 6799999999999999998764 1 2778887543 45778999999988
Q ss_pred cccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 155 VLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 155 vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
+++|+.. ++..+++++.++|||||.+++..++.
T Consensus 123 ~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 123 DVLSYVE-NKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp SHHHHCS-CHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred hhhhccc-cHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 7766642 48899999999999999999987764
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-12 Score=132.82 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=109.3
Q ss_pred eEEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCC--CCCCCCeEEEeCCcccHHHHHHHhcCCCEEE
Q 008457 326 EMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNP--TIVAGKKVLELGCGCGGICSMVAAGSADLVV 403 (564)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~--~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~ 403 (564)
....+.+.+..+.+....+.+.... +.+.+..+.+.+.... ...++.+|||||||+|.++..++.. ..+|+
T Consensus 187 ~~~~~~~~g~~~~~~~~pgvFs~~~------~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~V~ 259 (381)
T 3dmg_A 187 RAFSARILGAEYTFHHLPGVFSAGK------VDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVV 259 (381)
T ss_dssp EEEEEEETTEEEEEEECTTCTTTTS------CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT-TCEEE
T ss_pred ceeeEEecCceEEEEeCCCceeCCC------CCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc-CCEEE
Confidence 4556777888888887666653322 3345666666665422 2347789999999999888887776 45999
Q ss_pred EEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeC-----CCChHHHHHHHH
Q 008457 404 ATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-----PEAILPLFATAK 478 (564)
Q Consensus 404 ~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-----~~~~~~l~~~~~ 478 (564)
++|+|+.+++.+++|+..|+.. +.+...|+.+.. ...++||+|+++.+++. ......+++.+.
T Consensus 260 gvDis~~al~~A~~n~~~~~~~-----v~~~~~D~~~~~-------~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~ 327 (381)
T 3dmg_A 260 GVEDDLASVLSLQKGLEANALK-----AQALHSDVDEAL-------TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAA 327 (381)
T ss_dssp EEESBHHHHHHHHHHHHHTTCC-----CEEEECSTTTTS-------CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHcCCC-----eEEEEcchhhcc-------ccCCCeEEEEECCchhhcccccHHHHHHHHHHHH
Confidence 9999999999999999998763 555555554321 12469999998777665 456778999999
Q ss_pred HHhhccCCCCCCCCCcEEEEEEeec
Q 008457 479 ELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 479 ~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
++| +|+| .++++....
T Consensus 328 ~~L-kpGG--------~l~iv~n~~ 343 (381)
T 3dmg_A 328 ARL-RPGG--------VFFLVSNPF 343 (381)
T ss_dssp HHE-EEEE--------EEEEEECTT
T ss_pred Hhc-CcCc--------EEEEEEcCC
Confidence 999 9988 777765443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-14 Score=131.41 Aligned_cols=143 Identities=15% Similarity=0.179 Sum_probs=106.2
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.+...++.+|||+|||+|.++..+++. +|..+|+|+|+++.|++.++++... ..++..+..|....... ++..+++|
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-~~ni~~V~~d~~~p~~~-~~~~~~vD 149 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-RRNIFPILGDARFPEKY-RHLVEGVD 149 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-CTTEEEEESCTTCGGGG-TTTCCCEE
T ss_pred hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-hcCeeEEEEeccCcccc-ccccceEE
Confidence 345689999999999999999999987 6889999999999999999887654 35888888888654432 55678999
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHH
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLF 228 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 228 (564)
+|++.. .|. ++...++.++.+.|||||.+++........ ... . ... ..++..+.|
T Consensus 150 vVf~d~--~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d---~~~--------------p-~~~---~~~~ev~~L 204 (233)
T 4df3_A 150 GLYADV--AQP--EQAAIVVRNARFFLRDGGYMLMAIKARSID---VTT--------------E-PSE---VYKREIKTL 204 (233)
T ss_dssp EEEECC--CCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHH---HHT--------------C-CCH---HHHHHHHHH
T ss_pred EEEEec--cCC--hhHHHHHHHHHHhccCCCEEEEEEecccCC---CCC--------------C-hHH---HHHHHHHHH
Confidence 998643 232 477889999999999999999875332111 000 0 000 123445778
Q ss_pred HhCCCcEEEee
Q 008457 229 KENGFDVEELG 239 (564)
Q Consensus 229 ~~aGf~~~~~~ 239 (564)
+++||++++..
T Consensus 205 ~~~GF~l~e~i 215 (233)
T 4df3_A 205 MDGGLEIKDVV 215 (233)
T ss_dssp HHTTCCEEEEE
T ss_pred HHCCCEEEEEE
Confidence 89999987753
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-14 Score=131.27 Aligned_cols=133 Identities=11% Similarity=0.091 Sum_probs=105.8
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~ 143 (564)
..+...+...++.+|||+|||+|.++..+++.+|..+|+++|+|+.+++.|+++....+ .+++++++|+..... .
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~ 105 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD----D 105 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT----T
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh----c
Confidence 33444555678899999999999999999999888999999999999999998765433 578999999853211 2
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF 223 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (564)
.++||+|++..+++ ++..+++++.++|||||.+++..... -+.++
T Consensus 106 ~~~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------------~~~~~ 150 (204)
T 3e05_A 106 LPDPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL------------------------------DTLTK 150 (204)
T ss_dssp SCCCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH------------------------------HHHHH
T ss_pred CCCCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc------------------------------ccHHH
Confidence 36799999988765 46789999999999999999965431 13577
Q ss_pred HHHHHHhCCCcEE
Q 008457 224 LTSLFKENGFDVE 236 (564)
Q Consensus 224 l~~~l~~aGf~~~ 236 (564)
+.++++++||.+.
T Consensus 151 ~~~~l~~~g~~~~ 163 (204)
T 3e05_A 151 AVEFLEDHGYMVE 163 (204)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHCCCcee
Confidence 8889999999433
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-15 Score=150.93 Aligned_cols=151 Identities=20% Similarity=0.283 Sum_probs=110.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++. .+++++.+|+.. +++. ||+|++.
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~~~--~D~v~~~ 274 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-----SGIEHVGGDMFA-----SVPQ--GDAMILK 274 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-----CCCC--EEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-----CCCEEEeCCccc-----CCCC--CCEEEEe
Confidence 5678999999999999999999999999999999 9999877653 459999999864 2343 9999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccc-eeecCCCceeeccCHHHHHHHHHhCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISEN-FYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
.++||+++.+...+|++++++|||||++++.++..+................. +.....+ ..++.++|.++|+++|
T Consensus 275 ~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~t~~e~~~ll~~aG 351 (372)
T 1fp1_D 275 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGG---RERTEKQYEKLSKLSG 351 (372)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSC---CCEEHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCC---ccCCHHHHHHHHHHCC
Confidence 99999986666799999999999999999987654321100000000000000 0000011 2348999999999999
Q ss_pred CcEEEeee
Q 008457 233 FDVEELGL 240 (564)
Q Consensus 233 f~~~~~~~ 240 (564)
|+++++..
T Consensus 352 f~~~~~~~ 359 (372)
T 1fp1_D 352 FSKFQVAC 359 (372)
T ss_dssp CSEEEEEE
T ss_pred CceEEEEE
Confidence 99987655
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=152.59 Aligned_cols=168 Identities=12% Similarity=0.170 Sum_probs=118.2
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccc-------cCCCeeEEEecCCccccc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDF-------TETRVSTFVCDLISDDLS 139 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~-------~~~~i~~~~~d~~~~~~~ 139 (564)
.+.+...++.+|||||||+|.++..|++.+ +..+|+|+|+|+.|++.|+++... ...++++.++|+...
T Consensus 714 LelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL--- 790 (950)
T 3htx_A 714 LKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF--- 790 (950)
T ss_dssp HHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC---
T ss_pred HHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC---
Confidence 334444688999999999999999999886 447999999999999999884321 124799999999653
Q ss_pred CCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccc----cc--cceeecCCC
Q 008457 140 RQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQK----IS--ENFYVRGDG 213 (564)
Q Consensus 140 ~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~ 213 (564)
++++++||+|++..+++|+++.....+++++.++|||| .+++.+++..... .+...... .. .........
T Consensus 791 -p~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~--lF~~Lnp~tr~~dPd~~~~~~fRh~ 866 (950)
T 3htx_A 791 -DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNT--ILQRSTPETQEENNSEPQLPKFRNH 866 (950)
T ss_dssp -CTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHH--HHTCC------------CCSSCSCS
T ss_pred -CcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhh--hhhhccccccccccccccccccccc
Confidence 44678999999999999998766778999999999999 8888776643211 11110000 00 000011122
Q ss_pred ceeeccCHHHHHH----HHHhCCCcEEEeeeee
Q 008457 214 TRAFYFSNDFLTS----LFKENGFDVEELGLCC 242 (564)
Q Consensus 214 ~~~~~~~~~~l~~----~l~~aGf~~~~~~~~~ 242 (564)
.+.+.|+.++++. +.++.||.+.......
T Consensus 867 DHrFEWTReEFr~Wae~LAer~GYsVefvGVGD 899 (950)
T 3htx_A 867 DHKFEWTREQFNQWASKLGKRHNYSVEFSGVGG 899 (950)
T ss_dssp SCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESS
T ss_pred CcceeecHHHHHHHHHHHHHhcCcEEEEEccCC
Confidence 3444578888887 6778899876555543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.5e-15 Score=148.10 Aligned_cols=147 Identities=19% Similarity=0.292 Sum_probs=110.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++. .++++..+|+.. +++ .||+|++.
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~p--~~D~v~~~ 253 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-----NNLTYVGGDMFT-----SIP--NADAVLLK 253 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-----TTEEEEECCTTT-----CCC--CCSEEEEE
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-----CCcEEEeccccC-----CCC--CccEEEee
Confidence 4678999999999999999999999999999999 9999887653 349999999854 223 39999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCC---CeEEEEEecCCCchhhh----hhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKP---TGYVLFRDYAIGDLAQE----RLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~Lkp---gG~lii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
.++||+++.+...+|++++++||| ||++++.++..+..... ....... + .+... . ...++.++|.+
T Consensus 254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d-~--~~~~~-~---g~~~t~~e~~~ 326 (352)
T 1fp2_A 254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMD-V--NMACL-N---GKERNEEEWKK 326 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHH-H--HGGGG-T---CCCEEHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhcc-H--HHHhc-c---CCCCCHHHHHH
Confidence 999999866667999999999999 99999988764332100 0000000 0 00000 1 12347999999
Q ss_pred HHHhCCCcEEEeee
Q 008457 227 LFKENGFDVEELGL 240 (564)
Q Consensus 227 ~l~~aGf~~~~~~~ 240 (564)
+++++||+.+++..
T Consensus 327 ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 327 LFIEAGFQHYKISP 340 (352)
T ss_dssp HHHHTTCCEEEEEE
T ss_pred HHHHCCCCeeEEEe
Confidence 99999999887654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=132.05 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=101.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC-CeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-RVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++....+. ++++.++|+.. +.+++||+|++
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~------~~~~~fD~i~~ 131 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA------DVDGKFDLIVA 131 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT------TCCSCEEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc------cCCCCceEEEE
Confidence 57889999999999999998875 456999999999999999988654442 38999999854 24589999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
+..+++ +..+++++.++|+|||.+++.++.. .+.+++.++++++|
T Consensus 132 ~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~~------------------------------~~~~~~~~~~~~~G 176 (205)
T 3grz_A 132 NILAEI-----LLDLIPQLDSHLNEDGQVIFSGIDY------------------------------LQLPKIEQALAENS 176 (205)
T ss_dssp ESCHHH-----HHHHGGGSGGGEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTT
T ss_pred CCcHHH-----HHHHHHHHHHhcCCCCEEEEEecCc------------------------------ccHHHHHHHHHHcC
Confidence 877654 4678999999999999999865432 14678889999999
Q ss_pred CcEEEeee
Q 008457 233 FDVEELGL 240 (564)
Q Consensus 233 f~~~~~~~ 240 (564)
|+++....
T Consensus 177 f~~~~~~~ 184 (205)
T 3grz_A 177 FQIDLKMR 184 (205)
T ss_dssp EEEEEEEE
T ss_pred CceEEeec
Confidence 99876543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-14 Score=131.99 Aligned_cols=112 Identities=18% Similarity=0.291 Sum_probs=92.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||+|.++..+ ..+++|+|+|+. ++.+.++|+... ++++++||+|++.
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l-----~~~v~~~D~s~~--------------~~~~~~~d~~~~----~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI-----RNPVHCFDLASL--------------DPRVTVCDMAQV----PLEDESVDVAVFC 122 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC-----CSCEEEEESSCS--------------STTEEESCTTSC----SCCTTCEEEEEEE
T ss_pred CCCCeEEEECCcCCHHHHHh-----hccEEEEeCCCC--------------CceEEEeccccC----CCCCCCEeEEEEe
Confidence 56789999999999988766 257999999986 467888888652 4577899999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
.++|+ .++..+++++.++|+|||.+++.++... +.+.+++.++++++||
T Consensus 123 ~~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~----------------------------~~~~~~~~~~l~~~Gf 171 (215)
T 2zfu_A 123 LSLMG---TNIRDFLEEANRVLKPGGLLKVAEVSSR----------------------------FEDVRTFLRAVTKLGF 171 (215)
T ss_dssp SCCCS---SCHHHHHHHHHHHEEEEEEEEEEECGGG----------------------------CSCHHHHHHHHHHTTE
T ss_pred hhccc---cCHHHHHHHHHHhCCCCeEEEEEEcCCC----------------------------CCCHHHHHHHHHHCCC
Confidence 99975 3678999999999999999999865320 1278999999999999
Q ss_pred cEEEee
Q 008457 234 DVEELG 239 (564)
Q Consensus 234 ~~~~~~ 239 (564)
+++...
T Consensus 172 ~~~~~~ 177 (215)
T 2zfu_A 172 KIVSKD 177 (215)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 987643
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=131.31 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+ .++++++.+..... .+++++||+|++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~---~~~~~~fD~v~~ 95 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD---HYVREPIRAAIF 95 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG---GTCCSCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH---hhccCCcCEEEE
Confidence 57899999999999999999988 7899999999999999998875433 67888886664321 234678999998
Q ss_pred cc-cccCC------ChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 153 VF-VLSAV------SPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 153 ~~-vl~~~------~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+. .+++. ..++...+++++.++|||||.+++..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 73 33220 2356778999999999999999998664
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-15 Score=139.41 Aligned_cols=155 Identities=12% Similarity=0.108 Sum_probs=103.2
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHH----Hhccccc-CCCeeEEEecCCcccccCCCCC
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLV----MTHKDFT-ETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a----~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
.+...++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.+ +++.... ..++.+.++|+... ++++
T Consensus 22 ~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l----~~~~ 97 (218)
T 3mq2_A 22 QLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL----PPLS 97 (218)
T ss_dssp HHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC----CSCC
T ss_pred HhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC----CCCC
Confidence 3445788999999999999999999999899999999999988753 3332222 24799999999653 3455
Q ss_pred CceeEEEEcc---ccc--CCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeecc
Q 008457 145 SSIDIVTMVF---VLS--AVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYF 219 (564)
Q Consensus 145 ~~fD~V~~~~---vl~--~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (564)
++ |.|.+.. .++ |++ ++..++++++++|||||.+++........ ....... . .......+
T Consensus 98 ~~-d~v~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~------~~~~~~~-~-----~~~~~~~~ 162 (218)
T 3mq2_A 98 GV-GELHVLMPWGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVALNLHAWR------PSVPEVG-E-----HPEPTPDS 162 (218)
T ss_dssp CE-EEEEEESCCHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEEEGGGBT------TBCGGGT-T-----CCCCCHHH
T ss_pred CC-CEEEEEccchhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEecccccc------ccccccc-c-----CCccchHH
Confidence 55 7766433 221 442 44789999999999999999954221100 0000000 0 00001112
Q ss_pred CHHHHHHHHHhCCCcEEEeeeeec
Q 008457 220 SNDFLTSLFKENGFDVEELGLCCK 243 (564)
Q Consensus 220 ~~~~l~~~l~~aGf~~~~~~~~~~ 243 (564)
..+.+..+++++||++..+.+...
T Consensus 163 ~~~~l~~~l~~aGf~i~~~~~~~~ 186 (218)
T 3mq2_A 163 ADEWLAPRYAEAGWKLADCRYLEP 186 (218)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEECH
T ss_pred HHHHHHHHHHHcCCCceeeeccch
Confidence 355688899999999988776543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.3e-14 Score=135.84 Aligned_cols=154 Identities=10% Similarity=0.036 Sum_probs=115.3
Q ss_pred ccceechhHHHHHHHHhcCCCCC-CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCce
Q 008457 353 TGLMLWESAHLMAAVLARNPTIV-AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKL 431 (564)
Q Consensus 353 ~G~~~W~~~~~l~~~l~~~~~~~-~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i 431 (564)
.|+.....+.+|+.|+ ... ++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+..|++. +++
T Consensus 29 ~~~~~~~d~~ll~~~~----~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~---~~v 101 (259)
T 3lpm_A 29 SVFSFSIDAVLLAKFS----YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLE---DQI 101 (259)
T ss_dssp TTBCCCHHHHHHHHHC----CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCT---TTE
T ss_pred CCccCcHHHHHHHHHh----cCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCc---ccE
Confidence 4455556688888886 233 67899999999998888888776669999999999999999999999875 567
Q ss_pred EEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC--------------------CChHHHHHHHHHHhhccCCCCCCC
Q 008457 432 ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP--------------------EAILPLFATAKELTASSNKSLRED 491 (564)
Q Consensus 432 ~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--------------------~~~~~l~~~~~~ll~~~~g~~~~~ 491 (564)
.+...|+.+.. ..+..++||+|+++.+.+.. ..+..+++.+.++| +|+|
T Consensus 102 ~~~~~D~~~~~-----~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~L-kpgG----- 170 (259)
T 3lpm_A 102 EIIEYDLKKIT-----DLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLL-KQGG----- 170 (259)
T ss_dssp EEECSCGGGGG-----GTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHE-EEEE-----
T ss_pred EEEECcHHHhh-----hhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHc-cCCc-----
Confidence 77766654321 12346799999987665544 23567999999999 9988
Q ss_pred CCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCCCC
Q 008457 492 QQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKN 529 (564)
Q Consensus 492 ~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 529 (564)
.++++... .....++..+.+.||.+.++..+.+
T Consensus 171 ---~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~v~~ 203 (259)
T 3lpm_A 171 ---KANFVHRP--ERLLDIIDIMRKYRLEPKRIQFVHP 203 (259)
T ss_dssp ---EEEEEECT--TTHHHHHHHHHHTTEEEEEEEEEES
T ss_pred ---EEEEEEcH--HHHHHHHHHHHHCCCceEEEEEeec
Confidence 78776543 3345688888899999998865533
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.2e-14 Score=133.73 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=88.1
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCcee
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
++...++.+|||||||+|.++..++.+.++++|+|+|+|++|++.|+++....+ .+++++++|+.. + ++++||
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~--l----~d~~FD 190 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV--I----DGLEFD 190 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG--G----GGCCCS
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh--C----CCCCcC
Confidence 455689999999999999887666555568999999999999999999875433 689999999864 2 468999
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+|++... . .+...+++++.++|||||++++...
T Consensus 191 vV~~~a~---~--~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 191 VLMVAAL---A--EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEEECTT---C--SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEECCC---c--cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 9998654 3 4678899999999999999999763
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=126.95 Aligned_cols=134 Identities=11% Similarity=0.059 Sum_probs=104.5
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+...+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ .+++++++|+... +. .
T Consensus 46 ~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~~---~ 119 (204)
T 3njr_A 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA-LA---D 119 (204)
T ss_dssp HHHHHHCCCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG-GT---T
T ss_pred HHHHhcCCCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh-cc---c
Confidence 3344555578899999999999999999988 7899999999999999998865433 3799999998652 11 2
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF 223 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (564)
..+||+|++...+ +.. +++++.++|||||.+++...... +..+
T Consensus 120 ~~~~D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~~~------------------------------~~~~ 162 (204)
T 3njr_A 120 LPLPEAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAVTLE------------------------------SETL 162 (204)
T ss_dssp SCCCSEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEECSHH------------------------------HHHH
T ss_pred CCCCCEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEecCcc------------------------------cHHH
Confidence 3579999987743 344 99999999999999998754321 3567
Q ss_pred HHHHHHhCCCcEEEeeeee
Q 008457 224 LTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 224 l~~~l~~aGf~~~~~~~~~ 242 (564)
+.+.+++.||++..+....
T Consensus 163 ~~~~l~~~g~~i~~i~~~~ 181 (204)
T 3njr_A 163 LTQLHARHGGQLLRIDIAQ 181 (204)
T ss_dssp HHHHHHHHCSEEEEEEEEE
T ss_pred HHHHHHhCCCcEEEEEeec
Confidence 7788999999888765543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=135.60 Aligned_cols=137 Identities=18% Similarity=0.229 Sum_probs=98.1
Q ss_pred hHHHHHHh---hccccccccchhHHHHhhhccCCCCCeEEEEcCCccc----cHHHHHHhCC----CcEEEEEeCChHHH
Q 008457 44 YWDLFYKR---HQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGN----TIFPLIAAYP----DVFVYACDFSPRAV 112 (564)
Q Consensus 44 ywd~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~----~~~~l~~~~~----~~~v~~iD~s~~~l 112 (564)
-|+.+... +...|+++...+...-..+++..++.+|||+|||+|. ++..|++..+ +.+|+|+|+|+.|+
T Consensus 71 e~~~l~~~lt~~~t~FfRd~~~f~~l~~~llp~~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L 150 (274)
T 1af7_A 71 EWQAFINALTTNLTAFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL 150 (274)
T ss_dssp HHHHHHHHHCCCCCCTTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH
T ss_pred HHHHHHHHHhhcCccccCChHHHHHHHHHccCCCCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHH
Confidence 35555433 2344666545432222223332346899999999998 5555666533 46999999999999
Q ss_pred HHHHhcccc-----------------------c---------CCCeeEEEecCCcccccCCCC-CCceeEEEEcccccCC
Q 008457 113 NLVMTHKDF-----------------------T---------ETRVSTFVCDLISDDLSRQIS-PSSIDIVTMVFVLSAV 159 (564)
Q Consensus 113 ~~a~~~~~~-----------------------~---------~~~i~~~~~d~~~~~~~~~~~-~~~fD~V~~~~vl~~~ 159 (564)
+.|++.... . ..++.|.+.|+... +++ .++||+|+|..+++|+
T Consensus 151 ~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~----~~~~~~~fDlI~crnvliyf 226 (274)
T 1af7_A 151 EKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEK----QYNVPGPFDAIFCRNVMIYF 226 (274)
T ss_dssp HHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCS----SCCCCCCEEEEEECSSGGGS
T ss_pred HHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCC----CCCcCCCeeEEEECCchHhC
Confidence 999986310 0 03688999998653 233 5789999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 160 SPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 160 ~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+++...++++++++.|+|||+|++.
T Consensus 227 ~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 227 DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 8778899999999999999999983
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-14 Score=134.03 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.|+++....+ .++.++++|+... ++..+++++||.|++
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~-l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEV-LHKMIPDNSLRMVQL 111 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHH-HHHHSCTTCEEEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHH-HHHHcCCCChheEEE
Confidence 47789999999999999999999999999999999999999998865433 5799999998542 111257889999999
Q ss_pred cccccCCChhHH------HHHHHHHHhccCCCeEEEEEec
Q 008457 153 VFVLSAVSPEKM------SLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 153 ~~vl~~~~~~~~------~~~l~~~~r~LkpgG~lii~~~ 186 (564)
++...+...... ..+++++.++|||||.+++.+.
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 865554422221 2599999999999999998753
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=136.27 Aligned_cols=165 Identities=13% Similarity=0.188 Sum_probs=102.6
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCC-hHHHHHH---HhcccccC-CCeeEEEecCCccccc
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFS-PRAVNLV---MTHKDFTE-TRVSTFVCDLISDDLS 139 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s-~~~l~~a---~~~~~~~~-~~i~~~~~d~~~~~~~ 139 (564)
..+.+... .++.+|||||||+|.++..+++..++.+|+|+|+| +.|++.| +++....+ .++.+.++|+... +
T Consensus 15 ~~~~~~~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l--~ 91 (225)
T 3p2e_A 15 DELTEIIG-QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL--P 91 (225)
T ss_dssp HHHHHHHT-TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC--C
T ss_pred HHHHHHhC-CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh--h
Confidence 44444443 67889999999999999999988889999999999 6777776 76654433 4789999998643 1
Q ss_pred CCCCCCceeEEEEcccccCCC---hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCcee
Q 008457 140 RQISPSSIDIVTMVFVLSAVS---PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRA 216 (564)
Q Consensus 140 ~~~~~~~fD~V~~~~vl~~~~---~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (564)
..+ .+.+|.|+++....+.. ..+...++++++|+|||||.+++............+. ... +. .....
T Consensus 92 ~~~-~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~------~~~-~~--~~~~~ 161 (225)
T 3p2e_A 92 FEL-KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIK------KRG-LP--LLSKA 161 (225)
T ss_dssp GGG-TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHH
T ss_pred hhc-cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhh------hcC-CC--CCChh
Confidence 111 24566666544322110 0123468999999999999999843222111000000 000 00 00111
Q ss_pred eccCHHHHHHHHHhCCCcEEEeeeeec
Q 008457 217 FYFSNDFLTSLFKENGFDVEELGLCCK 243 (564)
Q Consensus 217 ~~~~~~~l~~~l~~aGf~~~~~~~~~~ 243 (564)
++..+++..+++++||++........
T Consensus 162 -~~~~~el~~~l~~aGf~v~~~~~~~~ 187 (225)
T 3p2e_A 162 -YFLSEQYKAELSNSGFRIDDVKELDN 187 (225)
T ss_dssp -HHHSHHHHHHHHHHTCEEEEEEEECH
T ss_pred -hcchHHHHHHHHHcCCCeeeeeecCH
Confidence 22234599999999999988766543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=133.18 Aligned_cols=152 Identities=9% Similarity=0.051 Sum_probs=119.6
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
..++...+.+.+.....+.++.+|||+|||+|.++..++.....+|+++|+++.+++.+++++..+++. .++.+...
T Consensus 42 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~ 118 (273)
T 3bus_A 42 VDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA---NRVTFSYA 118 (273)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCC---cceEEEEC
Confidence 334555677777776666688999999999998888877766779999999999999999999887764 46777777
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc------------
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------ 504 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~------------ 504 (564)
|+.+. ++++++||+|++.+++++..+...+++.+.++| +|+| .++++.....
T Consensus 119 d~~~~-------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG--------~l~i~~~~~~~~~~~~~~~~~~ 182 (273)
T 3bus_A 119 DAMDL-------PFEDASFDAVWALESLHHMPDRGRALREMARVL-RPGG--------TVAIADFVLLAPVEGAKKEAVD 182 (273)
T ss_dssp CTTSC-------CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTE-EEEE--------EEEEEEEEESSCCCHHHHHHHH
T ss_pred ccccC-------CCCCCCccEEEEechhhhCCCHHHHHHHHHHHc-CCCe--------EEEEEEeeccCCCChhHHHHHH
Confidence 76543 234578999999999999999999999999999 9988 7776653321
Q ss_pred -----------CChhHHHHHHHHcCCeEEEEcCC
Q 008457 505 -----------VDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 505 -----------~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.+...+.+.++++||+++++...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 183 AFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDI 216 (273)
T ss_dssp HHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence 12345677888999999987644
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-14 Score=135.49 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=109.9
Q ss_pred CCCCeEEEEcCCc--cccHHHHHH-hCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccc--cCCCCCCce
Q 008457 74 AGRKDVLEVGCGA--GNTIFPLIA-AYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDL--SRQISPSSI 147 (564)
Q Consensus 74 ~~~~~VLDiGcG~--G~~~~~l~~-~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~--~~~~~~~~f 147 (564)
....+|||||||+ +.++..+++ ..|+.+|+++|.|+.|++.|+++..... .++.|+++|+..... ..+...+.|
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 4557899999997 445555554 4789999999999999999998875432 479999999976421 001002334
Q ss_pred e-----EEEEcccccCCChhH-HHHHHHHHHhccCCCeEEEEEecCCCchhh--hhhcccccccccceeecCCCceeecc
Q 008457 148 D-----IVTMVFVLSAVSPEK-MSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ--ERLTGKDQKISENFYVRGDGTRAFYF 219 (564)
Q Consensus 148 D-----~V~~~~vl~~~~~~~-~~~~l~~~~r~LkpgG~lii~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (564)
| .|+++.+|||+++.+ +..+++++.+.|+|||+|++++........ ..+.. .+. ..+....+.
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~--------~~~-~~g~p~~~r 227 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAR--------EYA-ARNMPMRLR 227 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHH--------HHH-HTTCCCCCC
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHH--------HHH-hcCCCCccC
Confidence 4 688999999998544 789999999999999999999876542111 11110 000 112223457
Q ss_pred CHHHHHHHHHhCCCcEEEeeee
Q 008457 220 SNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 220 ~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
+.+++..+|. ||++++-...
T Consensus 228 s~~ei~~~f~--GlelvePG~v 247 (277)
T 3giw_A 228 THAEAEEFFE--GLELVEPGIV 247 (277)
T ss_dssp CHHHHHHTTT--TSEECTTCSE
T ss_pred CHHHHHHHhC--CCcccCCcEe
Confidence 9999999994 9998775544
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=127.47 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
++.+|||+|||+|.++..++...|+.+++++|+|+.+++.|+++....+ .++++.++|+.... +.++||+|+++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~D~i~~~ 139 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-----SEPPFDGVISR 139 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-----CCSCEEEEECS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-----ccCCcCEEEEe
Confidence 4789999999999999999998888999999999999999998765433 35899999986421 45789999985
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.+ .++..+++++.++|+|||.+++.
T Consensus 140 ~~------~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 140 AF------ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CS------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred cc------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 43 24678999999999999999986
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=130.94 Aligned_cols=144 Identities=16% Similarity=0.238 Sum_probs=102.9
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
+.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+++.... .++.++.+|+.......+++ ++||
T Consensus 68 ~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D 145 (230)
T 1fbn_A 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIV-EKVD 145 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTS-CCEE
T ss_pred cccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccccC-ccEE
Confidence 334446789999999999999999999866679999999999999998876544 68999999986522112344 7899
Q ss_pred EEEEcccccCCC-hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHH
Q 008457 149 IVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 149 ~V~~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
+|+ ++++ +.....+++++.++|||||.+++. +..... . .......+..+++. +
T Consensus 146 ~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~---~----------------~~~~~~~~~~~~l~-~ 199 (230)
T 1fbn_A 146 VIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSI---D----------------VTKDPKEIFKEQKE-I 199 (230)
T ss_dssp EEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGT---C----------------SSSCHHHHHHHHHH-H
T ss_pred EEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCC---C----------------CCCCHHHhhHHHHH-H
Confidence 999 3443 234467899999999999999996 211000 0 00000012347777 8
Q ss_pred HHhCCCcEEEeee
Q 008457 228 FKENGFDVEELGL 240 (564)
Q Consensus 228 l~~aGf~~~~~~~ 240 (564)
++++||++++...
T Consensus 200 l~~~Gf~~~~~~~ 212 (230)
T 1fbn_A 200 LEAGGFKIVDEVD 212 (230)
T ss_dssp HHHHTEEEEEEEE
T ss_pred HHHCCCEEEEEEc
Confidence 9999998876543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-13 Score=129.90 Aligned_cols=142 Identities=16% Similarity=0.173 Sum_probs=110.7
Q ss_pred HhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh
Q 008457 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI 447 (564)
Q Consensus 368 l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~ 447 (564)
+.......++.+|||||||+|.++..++..+..+|+++|+++.+++.++++.. ..++.+...|..+.
T Consensus 36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~------ 102 (253)
T 3g5l_A 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-------SPVVCYEQKAIEDI------ 102 (253)
T ss_dssp HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-------CTTEEEEECCGGGC------
T ss_pred HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-------cCCeEEEEcchhhC------
Confidence 33444445789999999999988888887776699999999999999998865 14566666665422
Q ss_pred hhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------------------
Q 008457 448 KEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------------------ 503 (564)
Q Consensus 448 ~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r------------------------ 503 (564)
++++++||+|+++.++++..+...+++.+.++| +|+| .++++....
T Consensus 103 -~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (253)
T 3g5l_A 103 -AIEPDAYNVVLSSLALHYIASFDDICKKVYINL-KSSG--------SFIFSVEHPVFTADGRQDWYTDETGNKLHWPVD 172 (253)
T ss_dssp -CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE-EEEE--------EEEEEEECHHHHSSSSCSCEECSSCCEEEEEEC
T ss_pred -CCCCCCeEEEEEchhhhhhhhHHHHHHHHHHHc-CCCc--------EEEEEeCCCccccCccccceeccCCceEEEEec
Confidence 234679999999999999999999999999999 9988 777763210
Q ss_pred --------------------cCChhHHHHHHHHcCCeEEEEcCCCCCCC
Q 008457 504 --------------------QVDEPSMLSAATQCGFRLVDKWPSKNSAS 532 (564)
Q Consensus 504 --------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 532 (564)
..+...+.+.+.++||+++++.+...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~~~~ 221 (253)
T 3g5l_A 173 RYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAPE 221 (253)
T ss_dssp CTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCCCGG
T ss_pred cccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCCCchh
Confidence 01456788999999999999987655544
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.2e-14 Score=125.28 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=98.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++. + +|+|+|+|+.|++. ..++++.++|+.. ++++++||+|+++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~--~-~v~gvD~s~~~~~~--------~~~~~~~~~d~~~-----~~~~~~fD~i~~n 85 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR--N-TVVSTDLNIRALES--------HRGGNLVRADLLC-----SINQESVDVVVFN 85 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT--S-EEEEEESCHHHHHT--------CSSSCEEECSTTT-----TBCGGGCSEEEEC
T ss_pred CCCCeEEEeccCccHHHHHHHhc--C-cEEEEECCHHHHhc--------ccCCeEEECChhh-----hcccCCCCEEEEC
Confidence 56779999999999999999888 4 99999999999987 3468899999864 3355899999999
Q ss_pred ccccCCChh-------HHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 154 FVLSAVSPE-------KMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 154 ~vl~~~~~~-------~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
..+++.+.. +...+++++.+.| |||.+++..... ...+++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------------~~~~~l~~ 134 (170)
T 3q87_B 86 PPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------------NRPKEVLA 134 (170)
T ss_dssp CCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG------------------------------GCHHHHHH
T ss_pred CCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC------------------------------CCHHHHHH
Confidence 888875422 3467889999999 999999875321 25788999
Q ss_pred HHHhCCCcEEEeeeee
Q 008457 227 LFKENGFDVEELGLCC 242 (564)
Q Consensus 227 ~l~~aGf~~~~~~~~~ 242 (564)
+++++||+.+.+....
T Consensus 135 ~l~~~gf~~~~~~~~~ 150 (170)
T 3q87_B 135 RLEERGYGTRILKVRK 150 (170)
T ss_dssp HHHHTTCEEEEEEEEE
T ss_pred HHHHCCCcEEEEEeec
Confidence 9999999988765544
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=134.32 Aligned_cols=129 Identities=16% Similarity=0.278 Sum_probs=103.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+|||+|..+..++...|+.+|+++|+|+.+++.|+++....+ .++.+.++|+... ++.++||+|++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-----~~~~~fD~Iv~ 182 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-----LAGQQFAMIVS 182 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-----GTTCCEEEEEE
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-----cccCCccEEEE
Confidence 56789999999999999999988888999999999999999998865433 3689999998642 34678999999
Q ss_pred cc-------------cccCCCh----------hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceee
Q 008457 153 VF-------------VLSAVSP----------EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYV 209 (564)
Q Consensus 153 ~~-------------vl~~~~~----------~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (564)
+. +++|.|. +....+++++.++|+|||++++...
T Consensus 183 npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------------------- 239 (276)
T 2b3t_A 183 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------------------- 239 (276)
T ss_dssp CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------------------
T ss_pred CCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------------
Confidence 83 4444331 4568899999999999999998521
Q ss_pred cCCCceeeccCHHHHHHHHHhCCCcEEEe
Q 008457 210 RGDGTRAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
+.+.+++.++++++||..+..
T Consensus 240 --------~~~~~~~~~~l~~~Gf~~v~~ 260 (276)
T 2b3t_A 240 --------WQQGEAVRQAFILAGYHDVET 260 (276)
T ss_dssp --------SSCHHHHHHHHHHTTCTTCCE
T ss_pred --------chHHHHHHHHHHHCCCcEEEE
Confidence 125788999999999986654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=132.63 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=109.9
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.+.++.+|||||||+|.++..++..+..+|+++|+++.+++.+++++..+++. +++.+...|+.+. +++.
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-------~~~~ 112 (267)
T 3kkz_A 43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ---NRVTGIVGSMDDL-------PFRN 112 (267)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTSC-------CCCT
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC---cCcEEEEcChhhC-------CCCC
Confidence 35678999999999998888888776669999999999999999999988764 5688888877543 2345
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-------------------CChhHHHHH
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------VDEPSMLSA 513 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-------------------~~~~~~~~~ 513 (564)
++||+|++..++++. ....+++.+.++| +|+| .++++..... .+...+.+.
T Consensus 113 ~~fD~i~~~~~~~~~-~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 113 EELDLIWSEGAIYNI-GFERGLNEWRKYL-KKGG--------YLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAK 182 (267)
T ss_dssp TCEEEEEESSCGGGT-CHHHHHHHHGGGE-EEEE--------EEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHH
T ss_pred CCEEEEEEcCCceec-CHHHHHHHHHHHc-CCCC--------EEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHH
Confidence 799999999999888 8999999999999 9988 7777654311 122356688
Q ss_pred HHHcCCeEEEEcCCC
Q 008457 514 ATQCGFRLVDKWPSK 528 (564)
Q Consensus 514 ~~~~g~~~~~~~~~~ 528 (564)
+.++||+++++....
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 889999999987553
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=133.06 Aligned_cols=141 Identities=14% Similarity=0.144 Sum_probs=111.1
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+.+.....+.++.+|||+|||+|.++..++...+.+|+++|+++.+++.+++++..+++. .++.+...|+.+.
T Consensus 25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~v~~~~~d~~~~--- 98 (256)
T 1nkv_A 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS---ERVHFIHNDAAGY--- 98 (256)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCCTTC---
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC---cceEEEECChHhC---
Confidence 4444444445688899999999998888777766679999999999999999999887764 4688887777543
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------c
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------Q 504 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--------------------~ 504 (564)
+. +++||+|++..++++..+...+++.+.++| +|+| .++++.... .
T Consensus 99 ----~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (256)
T 1nkv_A 99 ----VA-NEKCDVAACVGATWIAGGFAGAEELLAQSL-KPGG--------IMLIGEPYWRQLPATEEIAQACGVSSTSDF 164 (256)
T ss_dssp ----CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSE-EEEE--------EEEEEEEEETTCCSSHHHHHTTTCSCGGGS
T ss_pred ----Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHc-CCCe--------EEEEecCcccCCCChHHHHHHHhccccccc
Confidence 12 468999999999999989999999999999 9988 777765431 1
Q ss_pred CChhHHHHHHHHcCCeEEEEc
Q 008457 505 VDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 505 ~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+...+.+.+.++||.+.++.
T Consensus 165 ~~~~~~~~~l~~aGf~~~~~~ 185 (256)
T 1nkv_A 165 LTLPGLVGAFDDLGYDVVEMV 185 (256)
T ss_dssp CCHHHHHHHHHTTTBCCCEEE
T ss_pred CCHHHHHHHHHHCCCeeEEEE
Confidence 123467788889999988764
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-13 Score=129.35 Aligned_cols=144 Identities=11% Similarity=0.108 Sum_probs=113.1
Q ss_pred HHHHhcC-CCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 365 AAVLARN-PTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 365 ~~~l~~~-~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
...+... ..+.++.+|||||||+|.++..++..+..+|+++|+++.+++.+++|+..+++. +++.+...|+.+.
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~-- 108 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA---DRVKGITGSMDNL-- 108 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTSC--
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC---CceEEEECChhhC--
Confidence 4444433 355578899999999998888888877669999999999999999999988874 5688887777433
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-------------------c
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------------Q 504 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-------------------~ 504 (564)
++++++||+|++..++++. +...+++.+.++| +|+| .++++.... .
T Consensus 109 -----~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (257)
T 3f4k_A 109 -----PFQNEELDLIWSEGAIYNI-GFERGMNEWSKYL-KKGG--------FIAVSEASWFTSERPAEIEDFWMDAYPEI 173 (257)
T ss_dssp -----SSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTE-EEEE--------EEEEEEEEESSSCCCHHHHHHHHHHCTTC
T ss_pred -----CCCCCCEEEEEecChHhhc-CHHHHHHHHHHHc-CCCc--------EEEEEEeeccCCCChHHHHHHHHHhCCCC
Confidence 2345799999999999988 7999999999999 9988 777775431 1
Q ss_pred CChhHHHHHHHHcCCeEEEEcCCC
Q 008457 505 VDEPSMLSAATQCGFRLVDKWPSK 528 (564)
Q Consensus 505 ~~~~~~~~~~~~~g~~~~~~~~~~ 528 (564)
.+...+.+.+.++||++++.....
T Consensus 174 ~~~~~~~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 174 SVIPTCIDKMERAGYTPTAHFILP 197 (257)
T ss_dssp CBHHHHHHHHHHTTEEEEEEEECC
T ss_pred CCHHHHHHHHHHCCCeEEEEEECC
Confidence 123456788889999999987553
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=132.09 Aligned_cols=148 Identities=17% Similarity=0.225 Sum_probs=116.3
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
.++.+..+++.+.....+.++.+|||+|||+|.++..++.....+|+++|+++.+++.+++++..+ .++.+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~ 109 (266)
T 3ujc_A 36 ISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN------NKIIFEAN 109 (266)
T ss_dssp CSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC------TTEEEEEC
T ss_pred cccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC------CCeEEEEC
Confidence 345556667777777667788999999999998888777765679999999999999999876543 45777777
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc----------
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ---------- 504 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~---------- 504 (564)
|+.+. ++++++||+|++..++++. .+...+++.+.++| +|+| .+++......
T Consensus 110 d~~~~-------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~~~~~~~~~~~ 173 (266)
T 3ujc_A 110 DILTK-------EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWL-KPTG--------TLLITDYCATEKENWDDEFK 173 (266)
T ss_dssp CTTTC-------CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEEEESCGGGCCHHHH
T ss_pred ccccC-------CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHc-CCCC--------EEEEEEeccCCcccchHHHH
Confidence 66543 2346799999999999998 89999999999999 9988 7777654322
Q ss_pred ----------CChhHHHHHHHHcCCeEEEEcC
Q 008457 505 ----------VDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 505 ----------~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
.+...+.+.+.++||+++++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 205 (266)
T 3ujc_A 174 EYVKQRKYTLITVEEYADILTACNFKNVVSKD 205 (266)
T ss_dssp HHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 2345677888899999988763
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=133.12 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=100.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++....+..+++.++|+... ++.++||+|+++
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g--~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-----~~~~~fD~Vv~n 191 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-----LPFGPFDLLVAN 191 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-----GGGCCEEEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-----CcCCCCCEEEEC
Confidence 578999999999999999988874 4999999999999999988654443488888887542 345789999997
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
...+ .+..++.++.++|||||+++++.... .+.+++.+.++++||
T Consensus 192 ~~~~-----~~~~~l~~~~~~LkpgG~lils~~~~------------------------------~~~~~v~~~l~~~Gf 236 (254)
T 2nxc_A 192 LYAE-----LHAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGF 236 (254)
T ss_dssp CCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTC
T ss_pred CcHH-----HHHHHHHHHHHHcCCCCEEEEEeecc------------------------------CCHHHHHHHHHHCCC
Confidence 5543 45689999999999999999964321 146788999999999
Q ss_pred cEEEeee
Q 008457 234 DVEELGL 240 (564)
Q Consensus 234 ~~~~~~~ 240 (564)
+++....
T Consensus 237 ~~~~~~~ 243 (254)
T 2nxc_A 237 RPLEEAA 243 (254)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9876543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.8e-14 Score=131.72 Aligned_cols=119 Identities=15% Similarity=0.210 Sum_probs=96.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCC-CCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS-PSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~~fD~V~~ 152 (564)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++ ..+++++++|+... .+++ +++||+|++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~d~~~~---~~~~~~~~fD~v~~ 117 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN----APHADVYEWNGKGE---LPAGLGAPFGLIVS 117 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH----CTTSEEEECCSCSS---CCTTCCCCEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh----CCCceEEEcchhhc---cCCcCCCCEEEEEe
Confidence 67899999999999999999988 67999999999999999987 34789999998532 2456 789999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
+. ++..+++++.++|||||.++... .+.+.+.+.+.++++|
T Consensus 118 ~~--------~~~~~l~~~~~~LkpgG~l~~~~-------------------------------~~~~~~~~~~~l~~~G 158 (226)
T 3m33_A 118 RR--------GPTSVILRLPELAAPDAHFLYVG-------------------------------PRLNVPEVPERLAAVG 158 (226)
T ss_dssp ES--------CCSGGGGGHHHHEEEEEEEEEEE-------------------------------SSSCCTHHHHHHHHTT
T ss_pred CC--------CHHHHHHHHHHHcCCCcEEEEeC-------------------------------CcCCHHHHHHHHHHCC
Confidence 72 34568999999999999998110 0125677899999999
Q ss_pred CcEEEeee
Q 008457 233 FDVEELGL 240 (564)
Q Consensus 233 f~~~~~~~ 240 (564)
|.......
T Consensus 159 f~~~~~~~ 166 (226)
T 3m33_A 159 WDIVAEDH 166 (226)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEe
Confidence 99876544
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-13 Score=132.40 Aligned_cols=142 Identities=9% Similarity=0.051 Sum_probs=112.2
Q ss_pred HHHhcCCC-CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 366 AVLARNPT-IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 366 ~~l~~~~~-~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
+++..... +.++.+|||+|||+|.++..++...+.+|+++|+++.+++.+++|+..+++. .++.+...|..+.
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--- 179 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRID---DHVRSRVCNMLDT--- 179 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTSC---
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC---CceEEEECChhcC---
Confidence 45555544 6678899999999998888777764678999999999999999999998864 4678877776543
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC-------------------
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV------------------- 505 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~------------------- 505 (564)
++++++||+|++.+++.+. ....+++.+.++| +|+| .++++......
T Consensus 180 ----~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 3vc1_A 180 ----PFDKGAVTASWNNESTMYV-DLHDLFSEHSRFL-KVGG--------RYVTITGCWNPRYGQPSKWVSQINAHFECN 245 (312)
T ss_dssp ----CCCTTCEEEEEEESCGGGS-CHHHHHHHHHHHE-EEEE--------EEEEEEEEECTTTCSCCHHHHHHHHHHTCC
T ss_pred ----CCCCCCEeEEEECCchhhC-CHHHHHHHHHHHc-CCCc--------EEEEEEccccccccchhHHHHHHHhhhcCC
Confidence 2345799999999999888 5999999999999 9988 67666543221
Q ss_pred --ChhHHHHHHHHcCCeEEEEcCC
Q 008457 506 --DEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 506 --~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
+...+.+.++++||+++++...
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeC
Confidence 2345678888999999988654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=130.06 Aligned_cols=136 Identities=14% Similarity=0.057 Sum_probs=103.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||||||+|..+..++..+|+.+|+++|+|+.+++.|+++....+ .+++++++|+...... +...++||+|++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~-~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLARE-AGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTS-TTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcc-cccCCCceEEEE
Confidence 56889999999999999999999889999999999999999998875444 3699999998543210 113478999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
..+ .++..+++.+.++|||||.+++..-..... ...++.+.++..|
T Consensus 158 ~a~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~----------------------------e~~~~~~~l~~~G 203 (249)
T 3g89_A 158 RAV------APLCVLSELLLPFLEVGGAAVAMKGPRVEE----------------------------ELAPLPPALERLG 203 (249)
T ss_dssp ESS------CCHHHHHHHHGGGEEEEEEEEEEECSCCHH----------------------------HHTTHHHHHHHHT
T ss_pred CCc------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHH----------------------------HHHHHHHHHHHcC
Confidence 754 245679999999999999998754221110 1344567788889
Q ss_pred CcEEEeeeeecc
Q 008457 233 FDVEELGLCCKQ 244 (564)
Q Consensus 233 f~~~~~~~~~~~ 244 (564)
|.+..+.....+
T Consensus 204 ~~~~~~~~~~~p 215 (249)
T 3g89_A 204 GRLGEVLALQLP 215 (249)
T ss_dssp EEEEEEEEEECT
T ss_pred CeEEEEEEeeCC
Confidence 998876555433
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=130.00 Aligned_cols=142 Identities=14% Similarity=0.131 Sum_probs=109.4
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+++.+.......++ +|||+|||+|.++..++.....+|+++|+++.+++.+++++..++.. .++.+...|..+.
T Consensus 32 ~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~-- 105 (219)
T 3dlc_A 32 IAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN---DRIQIVQGDVHNI-- 105 (219)
T ss_dssp HHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECBTTBC--
T ss_pred HHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcccc---CceEEEEcCHHHC--
Confidence 34444443233234 99999999998888777765569999999999999999999988764 4678777776543
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee---------------------
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF--------------------- 502 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~--------------------- 502 (564)
++++++||+|+++.++++..+...+++.+.++| +|+| .++++...
T Consensus 106 -----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (219)
T 3dlc_A 106 -----PIEDNYADLIVSRGSVFFWEDVATAFREIYRIL-KSGG--------KTYIGGGFGNKELRDSISAEMIRKNPDWK 171 (219)
T ss_dssp -----SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE-EEEE--------EEEEEECCSSHHHHHHHHHHHHHHCTTHH
T ss_pred -----CCCcccccEEEECchHhhccCHHHHHHHHHHhC-CCCC--------EEEEEeccCcHHHHHHHHHHHHHhHHHHH
Confidence 235679999999999999999999999999999 9988 77776322
Q ss_pred -------ccCChhHHHHHHHHcCCeEEEEc
Q 008457 503 -------RQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 503 -------r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
+..+...+.+.++++||++.++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 172 EFNRKNISQENVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred hhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence 11122466788889999988876
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-13 Score=131.78 Aligned_cols=148 Identities=12% Similarity=0.127 Sum_probs=113.6
Q ss_pred HHHHHHHHhcCC----CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 361 AHLMAAVLARNP----TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 361 ~~~l~~~l~~~~----~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
...+.+.+.... .+.++.+|||+|||+|.++..++...+.+|+++|+++.+++.+++++...++. .++.+...
T Consensus 63 ~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~ 139 (297)
T 2o57_A 63 SLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA---DNITVKYG 139 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT---TTEEEEEC
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC---cceEEEEc
Confidence 333444444433 55678899999999998887777764569999999999999999999887764 46777777
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc------------
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------ 504 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~------------ 504 (564)
|+.+. ++++++||+|++.+++++..+...+++.+.++| +|+| .++++.....
T Consensus 140 d~~~~-------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~ 203 (297)
T 2o57_A 140 SFLEI-------PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVL-KPRG--------VMAITDPMKEDGIDKSSIQPIL 203 (297)
T ss_dssp CTTSC-------SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE-EEEE--------EEEEEEEEECTTCCGGGGHHHH
T ss_pred CcccC-------CCCCCCEeEEEecchhhhcCCHHHHHHHHHHHc-CCCe--------EEEEEEeccCCCCchHHHHHHH
Confidence 76543 345679999999999999999999999999999 9988 7777654321
Q ss_pred --------CChhHHHHHHHHcCCeEEEEcCC
Q 008457 505 --------VDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 505 --------~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.+...+.+.+.++||+++++...
T Consensus 204 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 204 DRIKLHDMGSLGLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHTCSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHhcCCCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 12335567788999999988643
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-13 Score=125.59 Aligned_cols=146 Identities=10% Similarity=0.080 Sum_probs=112.9
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~ 435 (564)
..|+++..+.+.+. +.++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..++. .++.+..
T Consensus 5 ~~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~----~~v~~~~ 75 (239)
T 1xxl_A 5 HHHHSLGLMIKTAE----CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGV----ENVRFQQ 75 (239)
T ss_dssp -CHHHHHHHHHHHT----CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTC----CSEEEEE
T ss_pred ccCCCcchHHHHhC----cCCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCC----CCeEEEe
Confidence 35677766666664 3477899999999997777776655 5999999999999999999988775 3577776
Q ss_pred eecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------
Q 008457 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------ 503 (564)
Q Consensus 436 l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r------------ 503 (564)
.|+.+. ++.+++||+|+++.++++..+...+++.+.++| +|+| .+++.....
T Consensus 76 ~d~~~~-------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~ 139 (239)
T 1xxl_A 76 GTAESL-------PFPDDSFDIITCRYAAHHFSDVRKAVREVARVL-KQDG--------RFLLVDHYAPEDPVLDEFVNH 139 (239)
T ss_dssp CBTTBC-------CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE-EEEE--------EEEEEEECBCSSHHHHHHHHH
T ss_pred cccccC-------CCCCCcEEEEEECCchhhccCHHHHHHHHHHHc-CCCc--------EEEEEEcCCCCChhHHHHHHH
Confidence 666432 234578999999999999999999999999999 9988 777654321
Q ss_pred -----------cCChhHHHHHHHHcCCeEEEEcC
Q 008457 504 -----------QVDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 504 -----------~~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
..+...+.+.+.++||.+.++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~ 173 (239)
T 1xxl_A 140 LNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 173 (239)
T ss_dssp HHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHhccccccCCCCHHHHHHHHHHCCCcEEEEEe
Confidence 12334677888899999888753
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=126.59 Aligned_cols=134 Identities=13% Similarity=0.027 Sum_probs=108.4
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
..++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.+++++..++. .++.+...|..+. ++.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~d~~~~-------~~~ 103 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL----KNVEVLKSEENKI-------PLP 103 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC----TTEEEEECBTTBC-------SSC
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC----CcEEEEecccccC-------CCC
Confidence 3467899999999998888777764 45999999999999999999988776 3577777766532 234
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-----------ccCChhHHHHHHHHcCCe
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-----------RQVDEPSMLSAATQCGFR 520 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-----------r~~~~~~~~~~~~~~g~~ 520 (564)
.++||+|+++.++++..+...+++.+.++| +|+| .++++... +..+...+.+.+.++||+
T Consensus 104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 174 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEPLKFLEELKRVA-KPFA--------YLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIR 174 (219)
T ss_dssp SSCEEEEEEESCGGGCSSHHHHHHHHHHHE-EEEE--------EEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCE
T ss_pred CCCeeEEEeehhhhhcCCHHHHHHHHHHHh-CCCe--------EEEEEEecccccccCCchhcccCHHHHHHHHHHCCCE
Confidence 578999999999999999999999999999 9988 77776533 223446788899999999
Q ss_pred EEEEcCC
Q 008457 521 LVDKWPS 527 (564)
Q Consensus 521 ~~~~~~~ 527 (564)
+.++...
T Consensus 175 ~~~~~~~ 181 (219)
T 3dh0_A 175 VGRVVEV 181 (219)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 9988644
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.8e-14 Score=142.26 Aligned_cols=148 Identities=20% Similarity=0.270 Sum_probs=109.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++. .++++..+|+.. +++ +||+|++.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~~--~~D~v~~~ 258 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN-----ENLNFVGGDMFK-----SIP--SADAVLLK 258 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC-----SSEEEEECCTTT-----CCC--CCSEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC-----CCcEEEeCccCC-----CCC--CceEEEEc
Confidence 3568999999999999999999999999999999 7888776542 359999999864 233 49999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCC---CeEEEEEecCCCchhhh----hhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKP---TGYVLFRDYAIGDLAQE----RLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~Lkp---gG~lii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
.++||+++.+...+|++++++|+| ||++++.++..+..... ....... + .+.....+ ..++.++|.+
T Consensus 259 ~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d-~--~~~~~~~g---~~~t~~e~~~ 332 (358)
T 1zg3_A 259 WVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYD-L--VMLTMFLG---KERTKQEWEK 332 (358)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHH-H--HHHHHHSC---CCEEHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhC-H--HHhccCCC---CCCCHHHHHH
Confidence 999999866677999999999999 99999987654321100 0000000 0 00000011 1348999999
Q ss_pred HHHhCCCcEEEeee
Q 008457 227 LFKENGFDVEELGL 240 (564)
Q Consensus 227 ~l~~aGf~~~~~~~ 240 (564)
+|+++||+++++..
T Consensus 333 ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 333 LIYDAGFSSYKITP 346 (358)
T ss_dssp HHHHTTCCEEEEEE
T ss_pred HHHHcCCCeeEEEe
Confidence 99999999887654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=126.47 Aligned_cols=108 Identities=17% Similarity=0.239 Sum_probs=80.8
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
...++.+|||+|||+|.++..+++..++.+|+|+|+|+.|++.+.+.... ..++.++++|+.......+++ ++||+|+
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-~~~v~~~~~d~~~~~~~~~~~-~~fD~V~ 131 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWKYSGIV-EKVDLIY 131 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGGTTTTC-CCEEEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-CCCeEEEEcCCCCchhhcccc-cceeEEE
Confidence 34678999999999999999999886567999999999877555443321 246888888876532112334 7899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++. .++ ++...++++++++|||||.+++..
T Consensus 132 ~~~-~~~---~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 132 QDI-AQK---NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp ECC-CST---THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eec-cCh---hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 973 222 355667999999999999999973
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=127.51 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=113.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
++...+.+.+.....+.++.+|||||||+|.++..++...+.+|+++|+++.+++.+++++...+.. .++.+...|+
T Consensus 47 ~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~ 123 (287)
T 1kpg_A 47 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL---RSKRVLLAGW 123 (287)
T ss_dssp HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC---SCEEEEESCG
T ss_pred HHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCC---CCeEEEECCh
Confidence 3445566777777666788999999999998888777554569999999999999999998876653 4567666555
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc------------
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------ 504 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~------------ 504 (564)
.+ ++ ++||+|++.+++.+. .....+++.+.++| +|+| .+++......
T Consensus 124 ~~---------~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~ 184 (287)
T 1kpg_A 124 EQ---------FD-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLL-PADG--------VMLLHTITGLHPKEIHERGLPM 184 (287)
T ss_dssp GG---------CC-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHS-CTTC--------EEEEEEEEECCHHHHTTTTCSC
T ss_pred hh---------CC-CCeeEEEEeCchhhcChHHHHHHHHHHHHhc-CCCC--------EEEEEEecCCCccccccccccc
Confidence 31 22 689999999999887 78999999999999 9988 7776654421
Q ss_pred ---------------------CChhHHHHHHHHcCCeEEEEcC
Q 008457 505 ---------------------VDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 505 ---------------------~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
.+...+.+.++++||+++++..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~ 227 (287)
T 1kpg_A 185 SFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQS 227 (287)
T ss_dssp HHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEE
T ss_pred cccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEe
Confidence 1334667778889999998864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-14 Score=127.19 Aligned_cols=105 Identities=12% Similarity=0.209 Sum_probs=87.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.+..+|||+|||+|.++..++...|+.+|+++|+|+.|++.++++....+....+...|.... .+.++||+|++.
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-----~~~~~~DvVLa~ 122 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-----VYKGTYDVVFLL 122 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-----HTTSEEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-----CCCCCcChhhHh
Confidence 568899999999999999999988999999999999999999998765444333444666432 267889999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.++|++ ++.+..+.++.+.|+|||.++-..
T Consensus 123 k~LHlL--~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 123 KMLPVL--KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp TCHHHH--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hHHHhh--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 999999 567777889999999999887653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=124.70 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=89.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|+++....+ .+++++++|+.... .+.+++||+|
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~v 97 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD---KYIDCPVKAV 97 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG---GTCCSCEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh---hhccCCceEE
Confidence 678899999999999999999884 56799999999999999998875443 47899999985432 1355899999
Q ss_pred EEccccc-------CCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 151 TMVFVLS-------AVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 151 ~~~~vl~-------~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+++..+. ....++...+++++.++|||||.+++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 9987551 112346678999999999999999998754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=127.97 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=113.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCC-CCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF-LAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~-~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++.. ..+|+++|+++.+++.+++++..++.... ..++.+...+.... ++..++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~ 101 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-------SFHDSS 101 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-------CSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-------CCCCCc
Confidence 6789999999999887777776 55899999999999999999887665321 13466665555432 234678
Q ss_pred ccEEEEeceeeCCCChH---HHHHHHHHHhhccCCCCCCCCCcEEEEEEee-----------------------------
Q 008457 455 FEVILGTDVSYIPEAIL---PLFATAKELTASSNKSLREDQQPAFILCHIF----------------------------- 502 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~---~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~----------------------------- 502 (564)
||+|+++.++++..+.. .+++.+.++| +|+| .++++...
T Consensus 102 ~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (235)
T 3sm3_A 102 FDFAVMQAFLTSVPDPKERSRIIKEVFRVL-KPGA--------YLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARD 172 (235)
T ss_dssp EEEEEEESCGGGCCCHHHHHHHHHHHHHHE-EEEE--------EEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEEC
T ss_pred eeEEEEcchhhcCCCHHHHHHHHHHHHHHc-CCCe--------EEEEEECCcchhHHHHHHHhhhhccchhhhcceEecc
Confidence 99999999999988777 8999999999 9988 77765331
Q ss_pred ----------ccCChhHHHHHHHHcCCeEEEEcCCCCCCCCcccccccccc
Q 008457 503 ----------RQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFS 543 (564)
Q Consensus 503 ----------r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (564)
+..+...+.+.++++||+++++.....+.....+...-|+.
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~g~~~~~~~i~ 223 (235)
T 3sm3_A 173 PETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVKELETRTGNKILGFVII 223 (235)
T ss_dssp TTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred cccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEecceeeccCCccceEEEe
Confidence 23455678899999999999997655455544555444443
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-13 Score=123.08 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=96.6
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CC--eeEEEecCCccccc
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TR--VSTFVCDLISDDLS 139 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~--i~~~~~d~~~~~~~ 139 (564)
....+.+.+...++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|+++....+ .+ +++.++|+..
T Consensus 40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---- 113 (194)
T 1dus_A 40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE---- 113 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT----
T ss_pred HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc----
Confidence 3455556666678899999999999999999888 7899999999999999998865433 33 8999999864
Q ss_pred CCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 140 RQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 140 ~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
++++++||+|+++..+++. .++...+++++.++|+|||.+++..+..
T Consensus 114 -~~~~~~~D~v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 114 -NVKDRKYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp -TCTTSCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred -ccccCCceEEEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 2346789999999888763 3678899999999999999999986653
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=126.03 Aligned_cols=139 Identities=12% Similarity=0.112 Sum_probs=106.1
Q ss_pred hccCC-CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCc
Q 008457 70 YFSGA-GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 70 ~l~~~-~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
++... ++.+|||+|||+|.++..+++..+. +|+|+|+++.+++.|+++....+ .+++++++|+.... ..++.++
T Consensus 43 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~--~~~~~~~ 119 (259)
T 3lpm_A 43 FSYLPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT--DLIPKER 119 (259)
T ss_dssp HCCCCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGG--GTSCTTC
T ss_pred HhcCCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhh--hhhccCC
Confidence 34445 7899999999999999999988644 99999999999999998875433 46999999986532 2356789
Q ss_pred eeEEEEcccccCC------------------ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccccccccee
Q 008457 147 IDIVTMVFVLSAV------------------SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFY 208 (564)
Q Consensus 147 fD~V~~~~vl~~~------------------~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (564)
||+|+++-.+... ...+...+++.+.++|||||++++....
T Consensus 120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 178 (259)
T 3lpm_A 120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP--------------------- 178 (259)
T ss_dssp EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT---------------------
T ss_pred ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH---------------------
Confidence 9999997544322 1135678999999999999999985321
Q ss_pred ecCCCceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 209 VRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
....++...+++.||....+....
T Consensus 179 ----------~~~~~~~~~l~~~~~~~~~~~~v~ 202 (259)
T 3lpm_A 179 ----------ERLLDIIDIMRKYRLEPKRIQFVH 202 (259)
T ss_dssp ----------TTHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ----------HHHHHHHHHHHHCCCceEEEEEee
Confidence 145678889999999988766554
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.3e-13 Score=134.21 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=92.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++....+.++++++.|+.... .++++||+|+++
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~----~~~~~fD~Ii~n 305 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL----TEEARFDIIVTN 305 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS----CTTCCEEEEEEC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc----ccCCCeEEEEEC
Confidence 46789999999999999999998 679999999999999999987665656899999986532 245799999999
Q ss_pred ccccC---CChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 154 FVLSA---VSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 154 ~vl~~---~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
..+|+ ...++...+++++.++|||||.+++....
T Consensus 306 pp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 306 PPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred CchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 99988 33478889999999999999999997543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-14 Score=132.34 Aligned_cols=139 Identities=18% Similarity=0.105 Sum_probs=87.2
Q ss_pred HHhhhccC-CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 66 EWGRYFSG-AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 66 ~~~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
.+.+.+.. .++.+|||+|||+|.++..+++.+++.+++|+|+|+.+++.|+++....+.+++++++|+.. ++++
T Consensus 20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-----~~~~ 94 (215)
T 4dzr_A 20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-----WLIE 94 (215)
T ss_dssp HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-----HHHH
T ss_pred HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-----hhhh
Confidence 33344433 67899999999999999999999888899999999999999998876544467888888754 2233
Q ss_pred -----CceeEEEEcccccC------CChhH------------------HHHHHHHHHhccCCCeEEEEEecCCCchhhhh
Q 008457 145 -----SSIDIVTMVFVLSA------VSPEK------------------MSLVLQNIKKVLKPTGYVLFRDYAIGDLAQER 195 (564)
Q Consensus 145 -----~~fD~V~~~~vl~~------~~~~~------------------~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~ 195 (564)
++||+|+++..+++ ++... ...+++++.++|||||++++.+...
T Consensus 95 ~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------- 167 (215)
T 4dzr_A 95 RAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH------- 167 (215)
T ss_dssp HHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-------
T ss_pred hhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-------
Confidence 89999999654432 22111 1778999999999999954443321
Q ss_pred hcccccccccceeecCCCceeeccCHHHHHHHHH--hCCCcEEEee
Q 008457 196 LTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFK--ENGFDVEELG 239 (564)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~aGf~~~~~~ 239 (564)
...+.+.++++ +.||..+...
T Consensus 168 -----------------------~~~~~~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 168 -----------------------NQADEVARLFAPWRERGFRVRKV 190 (215)
T ss_dssp -----------------------SCHHHHHHHTGGGGGGTEECCEE
T ss_pred -----------------------ccHHHHHHHHHHhhcCCceEEEE
Confidence 14677888999 8999766543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=124.68 Aligned_cols=110 Identities=9% Similarity=0.043 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++....+ .+++++++|+..... .+++++||+|++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~fD~i~~ 119 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVA--AGTTSPVDLVLA 119 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHH--HCCSSCCSEEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHh--hccCCCccEEEE
Confidence 57889999999999999988776 35689999999999999998875444 579999999864321 234689999999
Q ss_pred cccccCCChhHHHHHHHHHHh--ccCCCeEEEEEecC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKK--VLKPTGYVLFRDYA 187 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r--~LkpgG~lii~~~~ 187 (564)
+..+++. .++...+++++.+ +|+|||.+++....
T Consensus 120 ~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 120 DPPYNVD-SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp CCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 8887765 2578899999999 99999999997654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.9e-13 Score=126.02 Aligned_cols=131 Identities=18% Similarity=0.124 Sum_probs=99.1
Q ss_pred CCCCeEEEeCCc-ccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCG-CGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G-~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.++.+|||+||| +|.++..++.....+|+++|+++.+++.+++|+..++. ++.+...|+... .++.++
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~v~~~~~d~~~~------~~~~~~ 122 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-----NVRLVKSNGGII------KGVVEG 122 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-----CCEEEECSSCSS------TTTCCS
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEeCCchhh------hhcccC
Confidence 478899999999 99888777766567999999999999999999999875 456666665322 123457
Q ss_pred CccEEEEeceeeCCCC-------------------hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHH
Q 008457 454 GFEVILGTDVSYIPEA-------------------ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA 514 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~-------------------~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 514 (564)
+||+|+++.+.+.... ...+++.+.++| +|+| .+++....+......+.+.+
T Consensus 123 ~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~l 193 (230)
T 3evz_A 123 TFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHL-NPGG--------KVALYLPDKEKLLNVIKERG 193 (230)
T ss_dssp CEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGE-EEEE--------EEEEEEESCHHHHHHHHHHH
T ss_pred ceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHh-CCCe--------EEEEEecccHhHHHHHHHHH
Confidence 9999996544332211 478999999999 9988 77777665544445788889
Q ss_pred HHcCCeEEEEc
Q 008457 515 TQCGFRLVDKW 525 (564)
Q Consensus 515 ~~~g~~~~~~~ 525 (564)
.+.||.+..+-
T Consensus 194 ~~~g~~~~~~~ 204 (230)
T 3evz_A 194 IKLGYSVKDIK 204 (230)
T ss_dssp HHTTCEEEEEE
T ss_pred HHcCCceEEEE
Confidence 99999988773
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=126.34 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=102.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..++. .++.+...|..+. ++++++
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~----~~v~~~~~d~~~l-------~~~~~~ 103 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGH----QQVEYVQGDAEQM-------PFTDER 103 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTC----CSEEEEECCC-CC-------CSCTTC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCC----CceEEEEecHHhC-------CCCCCC
Confidence 377899999999997777777665 4999999999999999999987765 3566666655432 245679
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------------------cCChhHHH
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----------------------QVDEPSML 511 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-----------------------~~~~~~~~ 511 (564)
||+|+++.++++..+...+++.+.++| +|+| .++++.... ..+...+.
T Consensus 104 fD~V~~~~~l~~~~d~~~~l~~~~r~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (260)
T 1vl5_A 104 FHIVTCRIAAHHFPNPASFVSEAYRVL-KKGG--------QLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWL 174 (260)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHE-EEEE--------EEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred EEEEEEhhhhHhcCCHHHHHHHHHHHc-CCCC--------EEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHH
Confidence 999999999999999999999999999 9988 777753321 12234667
Q ss_pred HHHHHcCCeEEEEcC
Q 008457 512 SAATQCGFRLVDKWP 526 (564)
Q Consensus 512 ~~~~~~g~~~~~~~~ 526 (564)
+.+.++||.+..+..
T Consensus 175 ~~l~~aGf~~~~~~~ 189 (260)
T 1vl5_A 175 KMLEEAGFELEELHC 189 (260)
T ss_dssp HHHHHHTCEEEEEEE
T ss_pred HHHHHCCCeEEEEEE
Confidence 888889999887753
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.8e-13 Score=126.54 Aligned_cols=132 Identities=14% Similarity=0.005 Sum_probs=101.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||||||+|.++..++..+..+|+++|+++.+++.+++++..++. .++.+...|+.+. +...++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~d~~~~-------~~~~~~f 147 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK----RVRNYFCCGLQDF-------TPEPDSY 147 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG----GEEEEEECCGGGC-------CCCSSCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC----ceEEEEEcChhhc-------CCCCCCE
Confidence 5789999999999877777776667999999999999999999876541 3456665554322 1234589
Q ss_pred cEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-------------CChhHHHHHHHHcCCe
Q 008457 456 EVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------VDEPSMLSAATQCGFR 520 (564)
Q Consensus 456 D~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-------------~~~~~~~~~~~~~g~~ 520 (564)
|+|++..++++... ...+++.+.++| +|+| .++++..... .+...+.+.+.++||+
T Consensus 148 D~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 218 (241)
T 2ex4_A 148 DVIWIQWVIGHLTDQHLAEFLRRCKGSL-RPNG--------IIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLS 218 (241)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCC
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhc-CCCe--------EEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCe
Confidence 99999999888766 558999999999 9988 7777543221 1345788889999999
Q ss_pred EEEEcCC
Q 008457 521 LVDKWPS 527 (564)
Q Consensus 521 ~~~~~~~ 527 (564)
++++...
T Consensus 219 ~~~~~~~ 225 (241)
T 2ex4_A 219 LLAEERQ 225 (241)
T ss_dssp EEEEEEC
T ss_pred EEEeeec
Confidence 9998643
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.6e-13 Score=119.85 Aligned_cols=134 Identities=12% Similarity=0.190 Sum_probs=105.0
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 141 (564)
+...+.+.+...++.+|||+|||+|.++..+++ ++.+++|+|+|+.+++.|+++....+ .++++.++|+.. .
T Consensus 23 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~---- 95 (183)
T 2yxd_A 23 IRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V---- 95 (183)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H----
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c----
Confidence 334445555557889999999999999999988 58899999999999999998865443 478999999864 2
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCH
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (564)
+++++||+|++..+ .++..+++++.++ |||.+++...... +.
T Consensus 96 ~~~~~~D~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~~~------------------------------~~ 137 (183)
T 2yxd_A 96 LDKLEFNKAFIGGT------KNIEKIIEILDKK--KINHIVANTIVLE------------------------------NA 137 (183)
T ss_dssp GGGCCCSEEEECSC------SCHHHHHHHHHHT--TCCEEEEEESCHH------------------------------HH
T ss_pred ccCCCCcEEEECCc------ccHHHHHHHHhhC--CCCEEEEEecccc------------------------------cH
Confidence 34578999999888 2567899999998 9999999764321 24
Q ss_pred HHHHHHHHhCCCcEEEeeee
Q 008457 222 DFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~~~~~ 241 (564)
.++.+.+++.||.+..+...
T Consensus 138 ~~~~~~l~~~g~~~~~~~~~ 157 (183)
T 2yxd_A 138 AKIINEFESRGYNVDAVNVF 157 (183)
T ss_dssp HHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHcCCeEEEEEee
Confidence 66788999999987665443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=126.14 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=114.3
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
...+..++.....+.++.+|||||||+|.++..++... ..+|+++|+++.+++.+++++..++. .++.+...|..
T Consensus 22 ~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~d~~ 97 (276)
T 3mgg_A 22 AETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI----KNVKFLQANIF 97 (276)
T ss_dssp -CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC----CSEEEEECCGG
T ss_pred HHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEcccc
Confidence 34567777776666789999999999998888777765 56999999999999999999988775 34666665554
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----------------
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------------- 503 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r---------------- 503 (564)
+. ++++++||+|+++.++++..+...+++.+.++| +|+| .+++.....
T Consensus 98 ~~-------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (276)
T 3mgg_A 98 SL-------PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVL-KPGG--------TITVIEGDHGSCYFHPEGKKAIEAW 161 (276)
T ss_dssp GC-------CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE-EEEE--------EEEEEEECGGGCEEESCCHHHHHHH
T ss_pred cC-------CCCCCCeeEEEEechhhhcCCHHHHHHHHHHHc-CCCc--------EEEEEEcCCCCceECCCcHHHHHHH
Confidence 32 234679999999999999999999999999999 9988 777754211
Q ss_pred -------------cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 -------------QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 -------------~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
......+...++++||+++++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 162 NCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPR 198 (276)
T ss_dssp HHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence 011245677888999999888643
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-13 Score=121.75 Aligned_cols=136 Identities=22% Similarity=0.244 Sum_probs=104.9
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSR 140 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~ 140 (564)
+...+.+.+...++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.|+++....+ .++.+.++|+.. .+
T Consensus 21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-- 95 (192)
T 1l3i_A 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-AL-- 95 (192)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HH--
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hc--
Confidence 33444455556788999999999999999998884 799999999999999998765433 478898888754 12
Q ss_pred CCCC-CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeecc
Q 008457 141 QISP-SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYF 219 (564)
Q Consensus 141 ~~~~-~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (564)
+. ++||+|++..++++ +..+++++.++|+|||.+++..+.. -
T Consensus 96 --~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~~~------------------------------~ 138 (192)
T 1l3i_A 96 --CKIPDIDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL------------------------------E 138 (192)
T ss_dssp --TTSCCEEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH------------------------------H
T ss_pred --ccCCCCCEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEecCc------------------------------c
Confidence 22 58999999887764 4679999999999999999875431 1
Q ss_pred CHHHHHHHHHhCCCcEEEeee
Q 008457 220 SNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 220 ~~~~l~~~l~~aGf~~~~~~~ 240 (564)
+..++.+.+++.||.+.....
T Consensus 139 ~~~~~~~~l~~~g~~~~~~~~ 159 (192)
T 1l3i_A 139 TKFEAMECLRDLGFDVNITEL 159 (192)
T ss_dssp HHHHHHHHHHHTTCCCEEEEE
T ss_pred hHHHHHHHHHHCCCceEEEEE
Confidence 356778899999996554433
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-12 Score=126.93 Aligned_cols=133 Identities=14% Similarity=0.067 Sum_probs=106.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||||||+|.++..++.. +.+|+++|+++.+++.+++++..++.. .++.+...|+.+. ....+++|
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~------~~~~~~~f 137 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVS---DNMQFIHCAAQDV------ASHLETPV 137 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCG---GGEEEEESCGGGT------GGGCSSCE
T ss_pred CCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCC---cceEEEEcCHHHh------hhhcCCCc
Confidence 4679999999999887777766 568999999999999999999887653 4677776665432 12456799
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--------------------------------c
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF--------------------------------R 503 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~--------------------------------r 503 (564)
|+|++..++++..+...+++.+.++| +|+| .+++.... +
T Consensus 138 D~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (285)
T 4htf_A 138 DLILFHAVLEWVADPRSVLQTLWSVL-RPGG--------VLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDY 208 (285)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHTE-EEEE--------EEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSC
T ss_pred eEEEECchhhcccCHHHHHHHHHHHc-CCCe--------EEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCC
Confidence 99999999999999999999999999 9988 77776642 1
Q ss_pred cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+...+.+.++++||+++++..+
T Consensus 209 ~~~~~~l~~~l~~aGf~v~~~~~~ 232 (285)
T 4htf_A 209 PRDPTQVYLWLEEAGWQIMGKTGV 232 (285)
T ss_dssp CBCHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCceeeeeeE
Confidence 123357788889999999988755
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-12 Score=126.78 Aligned_cols=144 Identities=13% Similarity=0.106 Sum_probs=111.9
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 362 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 362 ~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
....+.+.....+.++.+|||||||+|.++..++...+.+|+++|+|+.+++.+++++..+++. .++.+...|+.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~- 133 (302)
T 3hem_A 58 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP---RRKEVRIQGWEE- 133 (302)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCS---SCEEEEECCGGG-
T ss_pred HHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECCHHH-
Confidence 3445556666666688999999999998888888774579999999999999999999988764 467777666532
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCC---------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc--------
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIP---------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------- 504 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~---------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-------- 504 (564)
+ +++||+|++..++.+. .....+++.+.++| +|+| .+++......
T Consensus 134 --------~-~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~ 195 (302)
T 3hem_A 134 --------F-DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLT-PDDG--------RMLLHTITIPDKEEAQEL 195 (302)
T ss_dssp --------C-CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSS-CTTC--------EEEEEEEECCCHHHHHHH
T ss_pred --------c-CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhc-CCCc--------EEEEEEEeccCccchhhc
Confidence 2 5799999999999887 34589999999999 9988 7776655321
Q ss_pred -------------------------CChhHHHHHHHHcCCeEEEEcCC
Q 008457 505 -------------------------VDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 505 -------------------------~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.+...+.+.+++.||+++++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~ 243 (302)
T 3hem_A 196 GLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRI 243 (302)
T ss_dssp TCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred cccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEEeC
Confidence 12235677888899999988643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.2e-13 Score=123.50 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=92.2
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSR 140 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 140 (564)
.+...+.+.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++....+ .++++..+|+....
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--- 138 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW--- 138 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC---
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC---
Confidence 33445556666688999999999999999999998 7899999999999999998875433 46899999986532
Q ss_pred CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.+.++||+|++..+++|++. ++.++|||||++++....
T Consensus 139 -~~~~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 139 -QARAPFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp -GGGCCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred -ccCCCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 24578999999999999963 578999999999998665
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-12 Score=120.49 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=80.0
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
...++.+|||+|||+|.++..+++. .+..+|+|+|+|+.|++...+.... ..++.++++|+........ ..++||+|
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-r~nv~~i~~Da~~~~~~~~-~~~~~D~I 150 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-RPNIFPLLADARFPQSYKS-VVENVDVL 150 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-CTTEEEEECCTTCGGGTTT-TCCCEEEE
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCeEEEEcccccchhhhc-cccceEEE
Confidence 3578999999999999999999887 5678999999999886443322211 2579999999875432111 24689999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
++.... + +....++..+.+.|||||.|+++..
T Consensus 151 ~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 151 YVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp EECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 997653 2 3444455667779999999999743
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-13 Score=130.83 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=102.9
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhccccc-C-CCeeEEEecCCcccccCCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT-E-TRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~-~-~~i~~~~~d~~~~~~~~~~~~ 144 (564)
.+.+...++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|+++.... + .++++.++|+.. ++++
T Consensus 103 ~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-----~~~~ 177 (275)
T 1yb2_A 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-----FISD 177 (275)
T ss_dssp ---CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-----CCCS
T ss_pred HHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-----cCcC
Confidence 34445578899999999999999999987 67889999999999999999887544 3 578999998864 3456
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFL 224 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (564)
++||+|++ +++ ++..+++++.++|||||.+++.+.... ..+++
T Consensus 178 ~~fD~Vi~-----~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~------------------------------~~~~~ 220 (275)
T 1yb2_A 178 QMYDAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLPNFD------------------------------QSEKT 220 (275)
T ss_dssp CCEEEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEESSHH------------------------------HHHHH
T ss_pred CCccEEEE-----cCc--CHHHHHHHHHHHcCCCCEEEEEeCCHH------------------------------HHHHH
Confidence 78999998 443 456799999999999999999764320 24566
Q ss_pred HHHHHhCCCcEEEeee
Q 008457 225 TSLFKENGFDVEELGL 240 (564)
Q Consensus 225 ~~~l~~aGf~~~~~~~ 240 (564)
.+.++++||..++...
T Consensus 221 ~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 221 VLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHSGGGTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 7788889998876543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-12 Score=123.44 Aligned_cols=116 Identities=11% Similarity=0.136 Sum_probs=89.7
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc---cC--CCeeEEEecCCcccc---cC
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF---TE--TRVSTFVCDLISDDL---SR 140 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~---~~--~~i~~~~~d~~~~~~---~~ 140 (564)
.++...++.+|||+|||+|.++..++++.|+.+|+|+|+++.+++.|+++... .+ .+++++++|+..... ..
T Consensus 30 ~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~ 109 (260)
T 2ozv_A 30 SLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEA 109 (260)
T ss_dssp HTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHT
T ss_pred HHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhh
Confidence 34444678899999999999999999998889999999999999999998765 33 358999999865411 01
Q ss_pred CCCCCceeEEEEccccc----------------CCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 141 QISPSSIDIVTMVFVLS----------------AVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~----------------~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
++++++||+|+++-.+. |........+++.+.++|||||.+++.
T Consensus 110 ~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 110 GLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp TCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 34678999999973322 122234678999999999999999885
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.4e-13 Score=133.70 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=93.2
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC----CCeeEEEecCCcccccCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE----TRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~----~~i~~~~~d~~~~~~~~~ 141 (564)
.+.+.+...++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.|+++....+ .++++...|+.. +
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-----~ 287 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-----G 287 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-----T
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-----c
Confidence 4455666567799999999999999999999989999999999999999998765433 257889999864 3
Q ss_pred CCCCceeEEEEcccccCC---ChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 142 ISPSSIDIVTMVFVLSAV---SPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~---~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+++++||+|+++..+|+. .......+++++.++|||||.+++..
T Consensus 288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 467899999999888853 33455679999999999999999964
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-12 Score=120.95 Aligned_cols=106 Identities=18% Similarity=0.267 Sum_probs=84.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..++.+|||+|||+|.++..+++. .++.+|+|+|+|+.+++.++++.... .++++.++|+.......++ .++||+|+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~-~~~~D~v~ 148 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPEEYRAL-VPKVDVIF 148 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTT-CCCEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCcchhhcc-cCCceEEE
Confidence 467889999999999999999987 45679999999999999888776544 6899999998753221122 35899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+... .+.....++.++.++|||||.+++.
T Consensus 149 ~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 149 EDVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp ECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 8654 2234456699999999999999987
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=127.95 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=103.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|+++... ...+++++.+|+..... ..++++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~~~~fD 171 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR--QTPDNTYD 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH--SSCTTCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH--hccCCcee
Confidence 567899999999999999999876678999999999999999987631 23679999999854321 11467899
Q ss_pred EEEEcccccCCChhHH--HHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHH
Q 008457 149 IVTMVFVLSAVSPEKM--SLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 226 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~--~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (564)
+|++....++.+...+ ..++++++++|||||++++....... .......+.+
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--------------------------~~~~~~~~~~ 225 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL--------------------------DLELIEKMSR 225 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT--------------------------CHHHHHHHHH
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc--------------------------chHHHHHHHH
Confidence 9999776655432222 58999999999999999986432100 0013577888
Q ss_pred HHHhCCCcEEEeeeeecc
Q 008457 227 LFKENGFDVEELGLCCKQ 244 (564)
Q Consensus 227 ~l~~aGf~~~~~~~~~~~ 244 (564)
.++++||..+.......+
T Consensus 226 ~l~~~GF~~v~~~~~~vP 243 (304)
T 3bwc_A 226 FIRETGFASVQYALMHVP 243 (304)
T ss_dssp HHHHHTCSEEEEEECCCT
T ss_pred HHHhCCCCcEEEEEeecc
Confidence 999999998876555433
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-12 Score=116.45 Aligned_cols=164 Identities=16% Similarity=0.202 Sum_probs=111.6
Q ss_pred CCceEEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEE
Q 008457 323 EDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLV 402 (564)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v 402 (564)
+....+...+.+..+.+....+.+.... .-..+..+.+.+ ...++.+|||+|||+|.++..++.. ..+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v 77 (194)
T 1dus_A 9 SDVKIVEDILRGKKLKFKTDSGVFSYGK------VDKGTKILVENV----VVDKDDDILDLGCGYGVIGIALADE-VKST 77 (194)
T ss_dssp CCEEEEEEEETTEEEEEEEETTSTTTTS------CCHHHHHHHHHC----CCCTTCEEEEETCTTSHHHHHHGGG-SSEE
T ss_pred ccccEEeeecCCCceEEEeCCCcCCccc------cchHHHHHHHHc----ccCCCCeEEEeCCCCCHHHHHHHHc-CCeE
Confidence 4555666677787777754333321110 112233333333 3347889999999999887777766 7799
Q ss_pred EEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeC-CCChHHHHHHHHHHh
Q 008457 403 VATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-PEAILPLFATAKELT 481 (564)
Q Consensus 403 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~~l~~~~~~ll 481 (564)
+++|+++.+++.+++|+..++... .++.+...|+.+. ...++||+|++..++++ ......+++.+.++|
T Consensus 78 ~~~D~~~~~~~~a~~~~~~~~~~~--~~~~~~~~d~~~~--------~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L 147 (194)
T 1dus_A 78 TMADINRRAIKLAKENIKLNNLDN--YDIRVVHSDLYEN--------VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELL 147 (194)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTT--SCEEEEECSTTTT--------CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCc--cceEEEECchhcc--------cccCCceEEEECCCcccchhHHHHHHHHHHHHc
Confidence 999999999999999999877531 1477777776542 12468999998665443 356789999999999
Q ss_pred hccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHc
Q 008457 482 ASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC 517 (564)
Q Consensus 482 ~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 517 (564)
+|+| .+++....+.. ...+.+.+.+.
T Consensus 148 -~~gG--------~l~~~~~~~~~-~~~~~~~l~~~ 173 (194)
T 1dus_A 148 -KDNG--------EIWVVIQTKQG-AKSLAKYMKDV 173 (194)
T ss_dssp -EEEE--------EEEEEEESTHH-HHHHHHHHHHH
T ss_pred -CCCC--------EEEEEECCCCC-hHHHHHHHHHH
Confidence 9988 77777665533 23466666655
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=121.70 Aligned_cols=134 Identities=15% Similarity=0.193 Sum_probs=99.0
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCC-CCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~-~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||||||+|.++..++..+. .+|+++|+++.+++.+++++..+++.. ...++.+...|+... +...
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-------~~~~ 100 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-------DKRF 100 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-------CGGG
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-------cccc
Confidence 3678999999999988888877654 699999999999999999998776531 001577776666322 2234
Q ss_pred CCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc--------------------CChhHH
Q 008457 453 EGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------VDEPSM 510 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~--------------------~~~~~~ 510 (564)
++||+|++.+++.+.. ....+++.+.++| +|+| .++.+..... .+...+
T Consensus 101 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (219)
T 3jwg_A 101 SGYDAATVIEVIEHLDENRLQAFEKVLFEFT-RPQT--------VIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEF 171 (219)
T ss_dssp TTCSEEEEESCGGGCCHHHHHHHHHHHHTTT-CCSE--------EEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHH
T ss_pred CCCCEEEEHHHHHhCCHHHHHHHHHHHHHhh-CCCE--------EEEEccchhhhhhhcccCcccccccCceeeecHHHH
Confidence 6899999999999877 3479999999999 9976 5555433211 133345
Q ss_pred H----HHHHHcCCeEEEE
Q 008457 511 L----SAATQCGFRLVDK 524 (564)
Q Consensus 511 ~----~~~~~~g~~~~~~ 524 (564)
. +.+.++||+++..
T Consensus 172 ~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 172 QTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHCCcEEEEE
Confidence 5 6678899998766
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-13 Score=133.16 Aligned_cols=118 Identities=10% Similarity=0.087 Sum_probs=92.4
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc-------c---cCCCeeEEEecCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-------F---TETRVSTFVCDLI 134 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~-------~---~~~~i~~~~~d~~ 134 (564)
..+.+.+...++.+|||||||+|..+..++...+..+|+|+|+|+.+++.|++... . ...+++++++|+.
T Consensus 163 ~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~ 242 (438)
T 3uwp_A 163 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 242 (438)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTT
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECccc
Confidence 44445566688999999999999999999987655569999999999999986421 1 1257999999997
Q ss_pred cccccCCCCC--CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCC
Q 008457 135 SDDLSRQISP--SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 135 ~~~~~~~~~~--~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~ 189 (564)
...+ .+ ..||+|+++..++ . .++...|.+++++|||||.|++.+...+
T Consensus 243 ~lp~----~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 243 SEEW----RERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp SHHH----HHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred CCcc----ccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 6433 22 4799999987753 3 4788889999999999999999765543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-12 Score=118.50 Aligned_cols=114 Identities=14% Similarity=0.192 Sum_probs=87.0
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcc--cccCCCCC
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISD--DLSRQISP 144 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~--~~~~~~~~ 144 (564)
++...++.+|||||||+|..+..+++.. ++.+|+++|+++.+++.|+++....+ .+++++++|+... .+...+..
T Consensus 53 l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 132 (221)
T 3u81_A 53 VIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDV 132 (221)
T ss_dssp HHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCC
T ss_pred HHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCC
Confidence 3333577899999999999999999875 47899999999999999999865433 4699999997432 11111123
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
++||+|++....++. .....++..+ ++|||||++++.+.
T Consensus 133 ~~fD~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 133 DTLDMVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp CCCSEEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred CceEEEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCC
Confidence 789999998877766 3455677777 99999999998543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-12 Score=124.25 Aligned_cols=139 Identities=9% Similarity=0.016 Sum_probs=105.2
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchh
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
.+.......++.+|||||||+|.++..++..+..+|+++|+++.+++.+++++..+ .++.+...|+.+.
T Consensus 84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~----- 152 (254)
T 1xtp_A 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM------PVGKFILASMETA----- 152 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS------SEEEEEESCGGGC-----
T ss_pred HHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC------CceEEEEccHHHC-----
Confidence 33333344578899999999998887777766678999999999999999987543 3466666555432
Q ss_pred hhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------cCChhHH
Q 008457 447 IKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------QVDEPSM 510 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--------------~~~~~~~ 510 (564)
++++++||+|++..++++. .....+++.+.++| +|+| .++++.... ..+...+
T Consensus 153 --~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (254)
T 1xtp_A 153 --TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQAL-TPNG--------YIFFKENCSTGDRFLVDKEDSSLTRSDIHY 221 (254)
T ss_dssp --CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEEBC--CCEEEETTTTEEEBCHHHH
T ss_pred --CCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhc-CCCe--------EEEEEecCCCcccceecccCCcccCCHHHH
Confidence 2345789999999999887 56899999999999 9988 777765311 1133567
Q ss_pred HHHHHHcCCeEEEEcCC
Q 008457 511 LSAATQCGFRLVDKWPS 527 (564)
Q Consensus 511 ~~~~~~~g~~~~~~~~~ 527 (564)
.+.+.++||+++++...
T Consensus 222 ~~~l~~aGf~~~~~~~~ 238 (254)
T 1xtp_A 222 KRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp HHHHHHHTCCEEEEEEC
T ss_pred HHHHHHCCCEEEEeeec
Confidence 88888999999988643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.5e-13 Score=125.36 Aligned_cols=113 Identities=13% Similarity=0.234 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc-------ccCCCeeEEEecCCcccccCCCCCCc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-------FTETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~-------~~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.++.+|||||||+|.++..|++.+|+.+|+|+|+|+.|++.|+++.. ....++.++++|+... ++..+++++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~-l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-LPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-HHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh-hhhhCCCcC
Confidence 56789999999999999999999889999999999999999987543 1235799999998641 211256889
Q ss_pred eeEEEEcccccCCChh------HHHHHHHHHHhccCCCeEEEEEecC
Q 008457 147 IDIVTMVFVLSAVSPE------KMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~------~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
||.|+++..-.|.... ....+++++.++|||||.|++.+..
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 9999986544332100 0146999999999999999987543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=117.55 Aligned_cols=121 Identities=16% Similarity=0.088 Sum_probs=92.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..++.+|||+|||. +++|+|+.|++.|+++... ++++.++|+..... .++++++||+|++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~---~~~~~~~d~~~~~~-~~~~~~~fD~V~~ 69 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN---EGRVSVENIKQLLQ-SAHKESSFDIILS 69 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT---TSEEEEEEGGGGGG-GCCCSSCEEEEEE
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc---CcEEEEechhcCcc-ccCCCCCEeEEEE
Confidence 36899999999986 2399999999999988642 48999999865322 1236889999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
+.++||++ .++..++++++|+|||||++++..+.... .+...+..+.+++.++++++|
T Consensus 70 ~~~l~~~~-~~~~~~l~~~~r~LkpgG~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~aG 127 (176)
T 2ld4_A 70 GLVPGSTT-LHSAEILAEIARILRPGGCLFLKEPVETA---------------------VDNNSKVKTASKLCSALTLSG 127 (176)
T ss_dssp CCSTTCCC-CCCHHHHHHHHHHEEEEEEEEEEEEEESS---------------------SCSSSSSCCHHHHHHHHHHTT
T ss_pred CChhhhcc-cCHHHHHHHHHHHCCCCEEEEEEcccccc---------------------cccccccCCHHHHHHHHHHCC
Confidence 99999993 24688999999999999999995432110 001222347899999999999
Q ss_pred CcEE
Q 008457 233 FDVE 236 (564)
Q Consensus 233 f~~~ 236 (564)
| +.
T Consensus 128 f-i~ 130 (176)
T 2ld4_A 128 L-VE 130 (176)
T ss_dssp C-EE
T ss_pred C-cE
Confidence 9 54
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=119.13 Aligned_cols=124 Identities=6% Similarity=0.069 Sum_probs=95.8
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.+++|+..++. .++.+...|+.+. .. .
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~--~~-----~ 105 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA----RNVTLVEAFAPEG--LD-----D 105 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC----TTEEEEECCTTTT--CT-----T
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEeCChhhh--hh-----c
Confidence 44578899999999998888887765 46999999999999999999998876 4577766665432 10 1
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCe
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFR 520 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~ 520 (564)
..+||+|++..... ....+++.+.++| +|+| .+++...... ....+.+.+.+.||.
T Consensus 106 ~~~~D~i~~~~~~~---~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~-~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 106 LPDPDRVFIGGSGG---MLEEIIDAVDRRL-KSEG--------VIVLNAVTLD-TLTKAVEFLEDHGYM 161 (204)
T ss_dssp SCCCSEEEESCCTT---CHHHHHHHHHHHC-CTTC--------EEEEEECBHH-HHHHHHHHHHHTTCE
T ss_pred CCCCCEEEECCCCc---CHHHHHHHHHHhc-CCCe--------EEEEEecccc-cHHHHHHHHHHCCCc
Confidence 25799999776554 7889999999999 9988 7777654432 234678888899984
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-12 Score=119.65 Aligned_cols=134 Identities=10% Similarity=0.164 Sum_probs=99.1
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCC-CCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~-~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||||||+|.++..++..+. .+|+++|+++.+++.+++|+..++... ...++.+...|.... +...
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-------~~~~ 100 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-------DKRF 100 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-------CGGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-------cccC
Confidence 3678999999999988888877654 699999999999999999998776531 012577776665322 2234
Q ss_pred CCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc--------------------CChhHH
Q 008457 453 EGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------VDEPSM 510 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~--------------------~~~~~~ 510 (564)
++||+|++.+++++.. ....+++.+.++| +|+| .++++..... .+...+
T Consensus 101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG--------~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (217)
T 3jwh_A 101 HGYDAATVIEVIEHLDLSRLGAFERVLFEFA-QPKI--------VIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQF 171 (217)
T ss_dssp CSCSEEEEESCGGGCCHHHHHHHHHHHHTTT-CCSE--------EEEEEEBHHHHHHTC-----------CCSCBCHHHH
T ss_pred CCcCEEeeHHHHHcCCHHHHHHHHHHHHHHc-CCCE--------EEEEccCcccchhhcccccccccccccccccCHHHH
Confidence 6899999999999876 4489999999999 9976 6655533210 133455
Q ss_pred H----HHHHHcCCeEEEE
Q 008457 511 L----SAATQCGFRLVDK 524 (564)
Q Consensus 511 ~----~~~~~~g~~~~~~ 524 (564)
. +.+.++||+++..
T Consensus 172 ~~~~~~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 172 QNWANKITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHHHHHHSSEEEEEC
T ss_pred HHHHHHHHHHcCceEEEE
Confidence 5 7778899998754
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=122.66 Aligned_cols=109 Identities=13% Similarity=0.028 Sum_probs=90.0
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
..+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....+ ++.+.++|+... + ...
T Consensus 60 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~~~-~---~~~ 132 (231)
T 1vbf_A 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLG-Y---EEE 132 (231)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGC-C---GGG
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH--cCEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCcccc-c---ccC
Confidence 34455556678899999999999999999998 4799999999999999999876544 899999998641 1 135
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
++||+|++..+++|++ .++.++|+|||.+++.....
T Consensus 133 ~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 133 KPYDRVVVWATAPTLL--------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEECSS
T ss_pred CCccEEEECCcHHHHH--------HHHHHHcCCCcEEEEEEcCC
Confidence 7899999999999985 25889999999999986543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=125.12 Aligned_cols=133 Identities=18% Similarity=0.174 Sum_probs=105.2
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~ 142 (564)
.+...+...++.+|||+|||+|.++..+++. +|+.+|+++|+++.+++.|+++....+ .++++.++|+.. ++
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~ 158 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-----GI 158 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG-----CC
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh-----cc
Confidence 3444555678999999999999999999998 788999999999999999998865433 348999999863 34
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHH
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
++++||+|++. .+ ++..+++++.++|+|||.+++..+... ..+
T Consensus 159 ~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~ 201 (255)
T 3mb5_A 159 EEENVDHVILD-----LP--QPERVVEHAAKALKPGGFFVAYTPCSN------------------------------QVM 201 (255)
T ss_dssp CCCSEEEEEEC-----SS--CGGGGHHHHHHHEEEEEEEEEEESSHH------------------------------HHH
T ss_pred CCCCcCEEEEC-----CC--CHHHHHHHHHHHcCCCCEEEEEECCHH------------------------------HHH
Confidence 67889999983 32 445789999999999999998754321 256
Q ss_pred HHHHHHHhCC--CcEEEeee
Q 008457 223 FLTSLFKENG--FDVEELGL 240 (564)
Q Consensus 223 ~l~~~l~~aG--f~~~~~~~ 240 (564)
++.+.+++.| |..++...
T Consensus 202 ~~~~~l~~~g~~f~~~~~~e 221 (255)
T 3mb5_A 202 RLHEKLREFKDYFMKPRTIN 221 (255)
T ss_dssp HHHHHHHHTGGGBSCCEEEC
T ss_pred HHHHHHHHcCCCccccEEEE
Confidence 6778899999 97766433
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=119.43 Aligned_cols=141 Identities=17% Similarity=0.159 Sum_probs=108.2
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
.++.+..+.+++.... .++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+..++.. .+.+...
T Consensus 43 ~~~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~~ 116 (205)
T 3grz_A 43 NHQTTQLAMLGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY----DIALQKT 116 (205)
T ss_dssp CHHHHHHHHHHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----CCEEEES
T ss_pred CCccHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEec
Confidence 4566677777776543 367899999999998888777666679999999999999999999988763 2677766
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHH
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ 516 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 516 (564)
|+.+. .+++||+|+++.++. .+..+++.+.++| +|+| .++++..... ....+.+.+.+
T Consensus 117 d~~~~---------~~~~fD~i~~~~~~~---~~~~~l~~~~~~L-~~gG--------~l~~~~~~~~-~~~~~~~~~~~ 174 (205)
T 3grz_A 117 SLLAD---------VDGKFDLIVANILAE---ILLDLIPQLDSHL-NEDG--------QVIFSGIDYL-QLPKIEQALAE 174 (205)
T ss_dssp STTTT---------CCSCEEEEEEESCHH---HHHHHGGGSGGGE-EEEE--------EEEEEEEEGG-GHHHHHHHHHH
T ss_pred ccccc---------CCCCceEEEECCcHH---HHHHHHHHHHHhc-CCCC--------EEEEEecCcc-cHHHHHHHHHH
Confidence 66432 346899999875442 3578889999999 9988 7777644443 23467888889
Q ss_pred cCCeEEEEc
Q 008457 517 CGFRLVDKW 525 (564)
Q Consensus 517 ~g~~~~~~~ 525 (564)
.||++.++.
T Consensus 175 ~Gf~~~~~~ 183 (205)
T 3grz_A 175 NSFQIDLKM 183 (205)
T ss_dssp TTEEEEEEE
T ss_pred cCCceEEee
Confidence 999999876
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-13 Score=134.73 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=95.7
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
..+.+.+...++.+|||+|||+|.++..+++.+|..+|+++|+|+.+++.|+++....+..+++...|+.. +.+
T Consensus 186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~------~~~ 259 (343)
T 2pjd_A 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS------EVK 259 (343)
T ss_dssp HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT------TCC
T ss_pred HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc------ccc
Confidence 34445554456789999999999999999999887899999999999999999876555567778888753 236
Q ss_pred CceeEEEEcccccCC---ChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 145 SSIDIVTMVFVLSAV---SPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~---~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++||+|+++..+|+. +.++...+++++.++|||||.+++....
T Consensus 260 ~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 260 GRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp SCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 789999999998863 3456789999999999999999997543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-12 Score=117.99 Aligned_cols=127 Identities=9% Similarity=0.126 Sum_probs=103.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCC-ceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS-SIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~-~fD~V 150 (564)
.++.+|||||||+|.++..+++.+|..+|+++|+++.+++.|+++....+ .++++.++|... +++.+ +||+|
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-----~l~~~~~~D~I 88 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-----AFEETDQVSVI 88 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-----GCCGGGCCCEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-----hcccCcCCCEE
Confidence 56789999999999999999999878899999999999999999876544 469999999853 23433 69999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
++..+-. +.+..++.+..+.|+|+|++++.-.. ..+.+++++.+
T Consensus 89 viaG~Gg----~~i~~Il~~~~~~L~~~~~lVlq~~~--------------------------------~~~~vr~~L~~ 132 (225)
T 3kr9_A 89 TIAGMGG----RLIARILEEGLGKLANVERLILQPNN--------------------------------REDDLRIWLQD 132 (225)
T ss_dssp EEEEECH----HHHHHHHHHTGGGCTTCCEEEEEESS--------------------------------CHHHHHHHHHH
T ss_pred EEcCCCh----HHHHHHHHHHHHHhCCCCEEEEECCC--------------------------------CHHHHHHHHHH
Confidence 8765422 45778999999999999999985221 46788999999
Q ss_pred CCCcEEEeeee
Q 008457 231 NGFDVEELGLC 241 (564)
Q Consensus 231 aGf~~~~~~~~ 241 (564)
.||.++.....
T Consensus 133 ~Gf~i~~e~lv 143 (225)
T 3kr9_A 133 HGFQIVAESIL 143 (225)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 99999876554
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5e-12 Score=125.85 Aligned_cols=144 Identities=11% Similarity=0.093 Sum_probs=110.6
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
+...+.+.+.....+.++.+|||+|||+|.++..++...+.+|+++|+++.+++.+++++..+++. .++.+...|+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~ 150 (318)
T 2fk8_A 74 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN---RSRQVLLQGWE 150 (318)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS---SCEEEEESCGG
T ss_pred HHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECChH
Confidence 345566677776666788999999999998887777664559999999999999999999887653 45666655543
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC------------
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV------------ 505 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~------------ 505 (564)
+ + +++||+|++..++.+. .....+++.+.++| +|+| .+++.......
T Consensus 151 ~---------~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~ 211 (318)
T 2fk8_A 151 D---------F-AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIM-PADG--------RMTVQSSVSYHPYEMAARGKKLS 211 (318)
T ss_dssp G---------C-CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHS-CTTC--------EEEEEEEECCCHHHHHTTCHHHH
T ss_pred H---------C-CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhc-CCCc--------EEEEEEeccCCchhhhhcccccc
Confidence 2 1 2689999999999887 78999999999999 9988 77766554221
Q ss_pred ---------------------ChhHHHHHHHHcCCeEEEEc
Q 008457 506 ---------------------DEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 506 ---------------------~~~~~~~~~~~~g~~~~~~~ 525 (564)
+...+.+.+++.||+++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 252 (318)
T 2fk8_A 212 FETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPL 252 (318)
T ss_dssp HHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCE
T ss_pred ccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEE
Confidence 23456677788899888765
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=122.51 Aligned_cols=130 Identities=18% Similarity=0.266 Sum_probs=101.0
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||||||+|.++..++..+..+|+++|+++.+++.++++... .++.+...|..+. ++++++
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~d~~~~-------~~~~~~ 107 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-------TGITYERADLDKL-------HLPQDS 107 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-------SSEEEEECCGGGC-------CCCTTC
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-------CCceEEEcChhhc-------cCCCCC
Confidence 46789999999999888777776555999999999999999987543 2456655554322 234578
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------------------c-------
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----------------------Q------- 504 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-----------------------~------- 504 (564)
||+|+++.++++..+...+++.+.++| +|+| .++++.... .
T Consensus 108 fD~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (243)
T 3bkw_A 108 FDLAYSSLALHYVEDVARLFRTVHQAL-SPGG--------HFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPR 178 (243)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHE-EEEE--------EEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEE
T ss_pred ceEEEEeccccccchHHHHHHHHHHhc-CcCc--------EEEEEeCCcccccCcCcceeecCCCceEEeecccccccce
Confidence 999999999999999999999999999 9988 676654210 0
Q ss_pred -------------CChhHHHHHHHHcCCeEEEEcCC
Q 008457 505 -------------VDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 505 -------------~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.+...+.+.+.++||+++++.+.
T Consensus 179 ~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 179 KTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eeeeccCceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 13456778899999999998754
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.7e-12 Score=117.68 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=103.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||||||+|.++..+++.+|..+|+++|+++.+++.|+++....+ .++++.++|....- .+.++||+|+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~----~~~~~~D~Iv 95 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF----EEADNIDTIT 95 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC----CGGGCCCEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----ccccccCEEE
Confidence 56789999999999999999998777899999999999999999876544 46999999985421 1233799988
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
+..+.. +.+..+|.+..+.|+++|.|+++... ..+.+++++.+.
T Consensus 96 iaGmGg----~lI~~IL~~~~~~l~~~~~lIlqp~~--------------------------------~~~~lr~~L~~~ 139 (230)
T 3lec_A 96 ICGMGG----RLIADILNNDIDKLQHVKTLVLQPNN--------------------------------REDDLRKWLAAN 139 (230)
T ss_dssp EEEECH----HHHHHHHHHTGGGGTTCCEEEEEESS--------------------------------CHHHHHHHHHHT
T ss_pred EeCCch----HHHHHHHHHHHHHhCcCCEEEEECCC--------------------------------ChHHHHHHHHHC
Confidence 755433 45778999999999999999986311 478899999999
Q ss_pred CCcEEEeeee
Q 008457 232 GFDVEELGLC 241 (564)
Q Consensus 232 Gf~~~~~~~~ 241 (564)
||.+++....
T Consensus 140 Gf~i~~E~lv 149 (230)
T 3lec_A 140 DFEIVAEDIL 149 (230)
T ss_dssp TEEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 9999876654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.38 E-value=5e-12 Score=117.08 Aligned_cols=125 Identities=10% Similarity=0.113 Sum_probs=98.5
Q ss_pred CCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 377 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
+.+|||+|||+|.++..++.. +.+|+++|+++.+++.++++. .++.+...|+.+. ++++++||
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-------~~~~~~fD 104 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTH---------PSVTFHHGTITDL-------SDSPKRWA 104 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHC---------TTSEEECCCGGGG-------GGSCCCEE
T ss_pred CCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC---------CCCeEEeCccccc-------ccCCCCeE
Confidence 779999999999887777776 458999999999999999872 2345554444321 34567999
Q ss_pred EEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc--------------CChhHHHHHHHHcCCe
Q 008457 457 VILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------VDEPSMLSAATQCGFR 520 (564)
Q Consensus 457 ~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~--------------~~~~~~~~~~~~~g~~ 520 (564)
+|++..++++.. ....+++.+.++| +|+| .++++..... .+...+.+.+.++||+
T Consensus 105 ~v~~~~~l~~~~~~~~~~~l~~~~~~L-~pgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 175 (203)
T 3h2b_A 105 GLLAWYSLIHMGPGELPDALVALRMAV-EDGG--------GLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQ 175 (203)
T ss_dssp EEEEESSSTTCCTTTHHHHHHHHHHTE-EEEE--------EEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEE
T ss_pred EEEehhhHhcCCHHHHHHHHHHHHHHc-CCCc--------EEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCc
Confidence 999999998864 8999999999999 9988 7777664422 3456788999999999
Q ss_pred EEEEcCC
Q 008457 521 LVDKWPS 527 (564)
Q Consensus 521 ~~~~~~~ 527 (564)
++++...
T Consensus 176 ~~~~~~~ 182 (203)
T 3h2b_A 176 VTSSHWD 182 (203)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9998754
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.9e-13 Score=120.72 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=87.5
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||||||+|.++..++..+..+|+++|+|+.+++.+++|+..++. .++.+...|+.+. ...+..++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~-----~~~~~~~~ 113 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL----SGATLRRGAVAAV-----VAAGTTSP 113 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC----SCEEEEESCHHHH-----HHHCCSSC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC----CceEEEEccHHHH-----HhhccCCC
Confidence 47889999999999888877777777999999999999999999999876 3566665554321 11233679
Q ss_pred ccEEEEeceeeCC--CChHHHHHHHHH--HhhccCCCCCCCCCcEEEEEEeecc
Q 008457 455 FEVILGTDVSYIP--EAILPLFATAKE--LTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 455 fD~Ii~~d~~y~~--~~~~~l~~~~~~--ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
||+|++..+ |+. .....+++.+.+ +| +|+| .+++.+..+.
T Consensus 114 fD~i~~~~p-~~~~~~~~~~~l~~~~~~~~L-~pgG--------~l~~~~~~~~ 157 (189)
T 3p9n_A 114 VDLVLADPP-YNVDSADVDAILAALGTNGWT-REGT--------VAVVERATTC 157 (189)
T ss_dssp CSEEEECCC-TTSCHHHHHHHHHHHHHSSSC-CTTC--------EEEEEEETTS
T ss_pred ccEEEECCC-CCcchhhHHHHHHHHHhcCcc-CCCe--------EEEEEecCCC
Confidence 999987554 554 678999999999 99 9988 8888776654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=125.82 Aligned_cols=148 Identities=15% Similarity=0.200 Sum_probs=94.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCee-EEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVS-TFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~-~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||||||||.++..+++.. ..+|+|+|+|+.|++.+.++.. ++. +...++..... ..++..+||+|++
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~~~----rv~~~~~~ni~~l~~-~~l~~~~fD~v~~ 157 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQDD----RVRSMEQYNFRYAEP-VDFTEGLPSFASI 157 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHTCT----TEEEECSCCGGGCCG-GGCTTCCCSEEEE
T ss_pred ccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCc----ccceecccCceecch-hhCCCCCCCEEEE
Confidence 467899999999999999998872 4589999999999988544321 121 11223321111 1234456999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
..+++++ ..+|.+++++|||||.+++.... ... . ....+... -.. .....+....+++.+++.++|
T Consensus 158 d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkP--qfe---~--~~~~~~~~-G~v-rd~~~~~~~~~~v~~~~~~~G 223 (291)
T 3hp7_A 158 DVSFISL-----NLILPALAKILVDGGQVVALVKP--QFE---A--GREQIGKN-GIV-RESSIHEKVLETVTAFAVDYG 223 (291)
T ss_dssp CCSSSCG-----GGTHHHHHHHSCTTCEEEEEECG--GGT---S--CGGGCC-C-CCC-CCHHHHHHHHHHHHHHHHHTT
T ss_pred EeeHhhH-----HHHHHHHHHHcCcCCEEEEEECc--ccc---c--ChhhcCCC-Ccc-CCHHHHHHHHHHHHHHHHHCC
Confidence 8888765 46899999999999999986311 100 0 00000000 000 001122457889999999999
Q ss_pred CcEEEeeee
Q 008457 233 FDVEELGLC 241 (564)
Q Consensus 233 f~~~~~~~~ 241 (564)
|.+..+...
T Consensus 224 f~v~~~~~s 232 (291)
T 3hp7_A 224 FSVKGLDFS 232 (291)
T ss_dssp EEEEEEEEC
T ss_pred CEEEEEEEC
Confidence 998765443
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-12 Score=123.40 Aligned_cols=133 Identities=18% Similarity=0.113 Sum_probs=104.2
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~ 143 (564)
+.+.+...++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|+++.... ..++.+...|+... +++
T Consensus 88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~----~~~ 163 (258)
T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA----ELE 163 (258)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC----CCC
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc----CCC
Confidence 344455578899999999999999999998 67889999999999999999886433 36789999998643 356
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHH
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF 223 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (564)
+++||+|++. .+ ++..+++++.++|+|||.+++..+... ...+
T Consensus 164 ~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~ 206 (258)
T 2pwy_A 164 EAAYDGVALD-----LM--EPWKVLEKAALALKPDRFLVAYLPNIT------------------------------QVLE 206 (258)
T ss_dssp TTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESCHH------------------------------HHHH
T ss_pred CCCcCEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCCHH------------------------------HHHH
Confidence 7889999983 32 445789999999999999999764320 2346
Q ss_pred HHHHHHhCCCcEEEeee
Q 008457 224 LTSLFKENGFDVEELGL 240 (564)
Q Consensus 224 l~~~l~~aGf~~~~~~~ 240 (564)
+.+.+++.||..++...
T Consensus 207 ~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEE
Confidence 66778889998776543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.3e-12 Score=120.41 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=83.5
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC---CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~---~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
.++.+|||||||+|.++..++... ..+|+++|+|+.|++.+++++...+.. .++.+...|..+ ++
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~---~~v~~~~~D~~~---------~~ 136 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP---TPVDVIEGDIRD---------IA 136 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS---SCEEEEESCTTT---------CC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC---ceEEEeeccccc---------cc
Confidence 378899999999997777777643 358999999999999999999876653 467766555432 23
Q ss_pred CCCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 452 NEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
.+.||+|+++-++.+.. ....+++.+.++| +|+| .++++...
T Consensus 137 ~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~L-kpGG--------~lii~e~~ 180 (261)
T 4gek_A 137 IENASMVVLNFTLQFLEPSERQALLDKIYQGL-NPGG--------ALVLSEKF 180 (261)
T ss_dssp CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEEB
T ss_pred ccccccceeeeeeeecCchhHhHHHHHHHHHc-CCCc--------EEEEEecc
Confidence 45799999998887643 4467899999999 9988 88877543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-12 Score=120.83 Aligned_cols=138 Identities=16% Similarity=0.125 Sum_probs=105.9
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+..++.... .++.+|||||||+|.++..++.. +.+|+++|+++.+++.++++.. ..++.+...|..+.
T Consensus 43 ~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~-- 110 (242)
T 3l8d_A 43 IIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERGE-------GPDLSFIKGDLSSL-- 110 (242)
T ss_dssp HHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTTC-------BTTEEEEECBTTBC--
T ss_pred HHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhcc-------cCCceEEEcchhcC--
Confidence 344554432 26789999999999887777766 5589999999999999988741 14577777666533
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------------- 503 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-------------------- 503 (564)
++++++||+|++..++++..+...+++.+.++| +|+| .++++....
T Consensus 111 -----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (242)
T 3l8d_A 111 -----PFENEQFEAIMAINSLEWTEEPLRALNEIKRVL-KSDG--------YACIAILGPTAKPRENSYPRLYGKDVVCN 176 (242)
T ss_dssp -----SSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHE-EEEE--------EEEEEEECTTCGGGGGGGGGGGTCCCSSC
T ss_pred -----CCCCCCccEEEEcChHhhccCHHHHHHHHHHHh-CCCe--------EEEEEEcCCcchhhhhhhhhhcccccccc
Confidence 234679999999999999999999999999999 9988 777776321
Q ss_pred cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+...+.+.+.++||++++...+
T Consensus 177 ~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 177 TMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCCHHHHHHHHHHcCCEEEEeecc
Confidence 123346788889999999987644
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=114.87 Aligned_cols=127 Identities=9% Similarity=0.058 Sum_probs=96.2
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
...++.+|||||||+|.++..++.. +.+|+++|+++.+++.+++|+..++.. +++.+..-|..+. +. ..
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~-----~~--~~ 120 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLS---PRMRAVQGTAPAA-----LA--DL 120 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCTTGG-----GT--TS
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC---CCEEEEeCchhhh-----cc--cC
Confidence 3457889999999999888777776 779999999999999999999998763 3577665554321 11 12
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
..||+|++...+ ..+ +++.+.++| +|+| .+++..... .....+.+.+++.|+++.++.
T Consensus 121 ~~~D~v~~~~~~----~~~-~l~~~~~~L-kpgG--------~lv~~~~~~-~~~~~~~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 121 PLPEAVFIGGGG----SQA-LYDRLWEWL-APGT--------RIVANAVTL-ESETLLTQLHARHGGQLLRID 178 (204)
T ss_dssp CCCSEEEECSCC----CHH-HHHHHHHHS-CTTC--------EEEEEECSH-HHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCCEEEECCcc----cHH-HHHHHHHhc-CCCc--------EEEEEecCc-ccHHHHHHHHHhCCCcEEEEE
Confidence 479999966533 455 999999999 9988 777765443 223467888889999988875
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.6e-12 Score=122.19 Aligned_cols=129 Identities=17% Similarity=0.223 Sum_probs=99.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++..+++.++. +|+|+|+|+.+++.|+++....+ .+++++++|+.... ++++||+|+
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~-----~~~~fD~Vi 197 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-----GENIADRIL 197 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-----CCSCEEEEE
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc-----ccCCccEEE
Confidence 56899999999999999999998543 79999999999999998765433 35889999986532 267899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
+... .....++.++.++|||||.+++.+........ .-..+.+.+.++++
T Consensus 198 ~~~p------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~------------------------~~~~~~i~~~~~~~ 247 (278)
T 2frn_A 198 MGYV------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP------------------------REPFETFKRITKEY 247 (278)
T ss_dssp ECCC------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHT
T ss_pred ECCc------hhHHHHHHHHHHHCCCCeEEEEEEeecccccc------------------------ccHHHHHHHHHHHc
Confidence 9543 12356899999999999999997654311100 01467788999999
Q ss_pred CCcEEEe
Q 008457 232 GFDVEEL 238 (564)
Q Consensus 232 Gf~~~~~ 238 (564)
||.+...
T Consensus 248 G~~~~~~ 254 (278)
T 2frn_A 248 GYDVEKL 254 (278)
T ss_dssp TCEEEEE
T ss_pred CCeeEEe
Confidence 9987653
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=132.69 Aligned_cols=120 Identities=12% Similarity=0.099 Sum_probs=89.9
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHH-------HhcccccC---CCeeEEEecC
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLV-------MTHKDFTE---TRVSTFVCDL 133 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a-------~~~~~~~~---~~i~~~~~d~ 133 (564)
...+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+++.+++.| +++....+ .+++++++|.
T Consensus 231 v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 231 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 3444555566789999999999999999999976556899999999999988 66654333 5788888764
Q ss_pred CcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 134 ISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 134 ~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.......+...++||+|+++.++ +. .++..+|+++.++|||||.+++.+.
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred cccccccccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeec
Confidence 32111000023689999998766 33 4778899999999999999998653
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=120.67 Aligned_cols=108 Identities=11% Similarity=0.084 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCc-eeEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSS-IDIV 150 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~-fD~V 150 (564)
++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|+++....+ .+++++++|+.... ..+++++ ||+|
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~fD~I 129 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL--KQPQNQPHFDVV 129 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT--TSCCSSCCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH--HhhccCCCCCEE
Confidence 57899999999999999877773 3589999999999999998875444 47899999985421 1223578 9999
Q ss_pred EEcccccCCChhHHHHHHHHH--HhccCCCeEEEEEecCC
Q 008457 151 TMVFVLSAVSPEKMSLVLQNI--KKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~--~r~LkpgG~lii~~~~~ 188 (564)
++...++ . .+...+++.+ .++|+|||.+++.....
T Consensus 130 ~~~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 130 FLDPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EECCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred EECCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 9988754 3 4677888888 67899999999876543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-13 Score=121.35 Aligned_cols=109 Identities=10% Similarity=0.037 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++....+.++++.++|+.......+-..++||+|+++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 67899999999999999999884 4599999999999999988754444788998887542110011134899999987
Q ss_pred cccCCChhHHHHHHHHHH--hccCCCeEEEEEecCCC
Q 008457 155 VLSAVSPEKMSLVLQNIK--KVLKPTGYVLFRDYAIG 189 (564)
Q Consensus 155 vl~~~~~~~~~~~l~~~~--r~LkpgG~lii~~~~~~ 189 (564)
.++ - ....+++.+. ++|+|||.+++......
T Consensus 119 ~~~-~---~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 PYA-M---DLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CTT-S---CTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCc-h---hHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 765 2 2234555555 99999999999876543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=129.41 Aligned_cols=103 Identities=19% Similarity=0.268 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCC------ccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCC--CC
Q 008457 74 AGRKDVLEVGCG------AGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI--SP 144 (564)
Q Consensus 74 ~~~~~VLDiGcG------~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~--~~ 144 (564)
.++.+||||||| +|..+..+++. +|+.+|+|+|+|+.|. ....+++|+++|+.+..+...+ .+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VDELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hcCCCcEEEEecccccchhhhhhccc
Confidence 467899999999 77777777665 5889999999999972 1246899999999754321000 15
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++||+|++..+ |++ .++..+|++++++|||||++++.+..
T Consensus 287 ~sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 287 GPFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CCEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred CCccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 79999999754 554 57889999999999999999998765
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-12 Score=119.57 Aligned_cols=112 Identities=15% Similarity=0.068 Sum_probs=89.7
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~ 142 (564)
..+.+.+...++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++....+ .++.+..+|+... +.
T Consensus 67 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~--- 142 (215)
T 2yxe_A 67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLG-YE--- 142 (215)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGC-CG---
T ss_pred HHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC-CC---
Confidence 344555666788999999999999999999885 45899999999999999998765333 4688988887421 11
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
..++||+|++..+++|++ .++.++|||||.+++.....
T Consensus 143 ~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 143 PLAPYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp GGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEESSS
T ss_pred CCCCeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEECCC
Confidence 257899999999999985 37899999999999986543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-12 Score=122.31 Aligned_cols=140 Identities=21% Similarity=0.209 Sum_probs=103.9
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
..+.+....+++... ..++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++|+..|+.. +.+...
T Consensus 103 ~~~tt~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~-----v~~~~~ 174 (254)
T 2nxc_A 103 HHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR-----PRFLEG 174 (254)
T ss_dssp CSHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC-----CEEEES
T ss_pred CCHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc-----EEEEEC
Confidence 445666666666554 34678999999999988877776665 9999999999999999999998762 455443
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHH
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ 516 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 516 (564)
++.+ .++.++||+|+++-+ . ..+..+++.+.++| +|+| .++++...... ...+.+.+.+
T Consensus 175 d~~~--------~~~~~~fD~Vv~n~~-~--~~~~~~l~~~~~~L-kpgG--------~lils~~~~~~-~~~v~~~l~~ 233 (254)
T 2nxc_A 175 SLEA--------ALPFGPFDLLVANLY-A--ELHAALAPRYREAL-VPGG--------RALLTGILKDR-APLVREAMAG 233 (254)
T ss_dssp CHHH--------HGGGCCEEEEEEECC-H--HHHHHHHHHHHHHE-EEEE--------EEEEEEEEGGG-HHHHHHHHHH
T ss_pred Chhh--------cCcCCCCCEEEECCc-H--HHHHHHHHHHHHHc-CCCC--------EEEEEeeccCC-HHHHHHHHHH
Confidence 3321 133568999997532 2 23678999999999 9988 78876554432 3467888889
Q ss_pred cCCeEEEEc
Q 008457 517 CGFRLVDKW 525 (564)
Q Consensus 517 ~g~~~~~~~ 525 (564)
.||++.++.
T Consensus 234 ~Gf~~~~~~ 242 (254)
T 2nxc_A 234 AGFRPLEEA 242 (254)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEe
Confidence 999998875
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=117.89 Aligned_cols=125 Identities=17% Similarity=0.172 Sum_probs=96.9
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||+|||+|.++..++.. +.+|+++|+++.+++.+++++. +.+...+..+. + ..++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~----------~~~~~~d~~~~-------~-~~~~ 102 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRLG----------RPVRTMLFHQL-------D-AIDA 102 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHT----------SCCEECCGGGC-------C-CCSC
T ss_pred CCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhcC----------CceEEeeeccC-------C-CCCc
Confidence 36789999999999887777766 4589999999999999999871 12222222211 1 4578
Q ss_pred ccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-------------CChhHHHHHHHHcC-
Q 008457 455 FEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------VDEPSMLSAATQCG- 518 (564)
Q Consensus 455 fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-------------~~~~~~~~~~~~~g- 518 (564)
||+|+++.++++.. ....+++.+.++| +|+| .++++..... .+...+.+.++++|
T Consensus 103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~ 173 (211)
T 3e23_A 103 YDAVWAHACLLHVPRDELADVLKLIWRAL-KPGG--------LFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGT 173 (211)
T ss_dssp EEEEEECSCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCC
T ss_pred EEEEEecCchhhcCHHHHHHHHHHHHHhc-CCCc--------EEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCC
Confidence 99999999998876 8889999999999 9988 7777765432 24567888899999
Q ss_pred CeEEEEcCC
Q 008457 519 FRLVDKWPS 527 (564)
Q Consensus 519 ~~~~~~~~~ 527 (564)
|+++++...
T Consensus 174 f~~~~~~~~ 182 (211)
T 3e23_A 174 WASVAVESS 182 (211)
T ss_dssp CSEEEEEEE
T ss_pred cEEEEEEec
Confidence 999988644
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-12 Score=114.04 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=83.1
Q ss_pred CCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCccc----ccCCCCCCce
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD----LSRQISPSSI 147 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~----~~~~~~~~~f 147 (564)
..++.+|||+|||+|.++..+++. .++.+++++|+++ +++. .++++.++|+.... +...+++++|
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------VGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------CcEEEEEcccccchhhhhhhccCCCCce
Confidence 367889999999999999999988 4678999999999 6432 46888899986543 1001466899
Q ss_pred eEEEEcccccCCChh---H------HHHHHHHHHhccCCCeEEEEEecCC
Q 008457 148 DIVTMVFVLSAVSPE---K------MSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 148 D~V~~~~vl~~~~~~---~------~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
|+|+++.++++.+.. . ...+++++.++|+|||.+++..+..
T Consensus 90 D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred eEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 999999988877422 1 1689999999999999999976543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=120.35 Aligned_cols=104 Identities=11% Similarity=0.104 Sum_probs=83.6
Q ss_pred CCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|+++....+ .+++++++|+.... ..+++++||+|
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l--~~~~~~~fD~V 133 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM--SRLANDSYQLV 133 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG--GGSCTTCEEEE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH--HHhcCCCcCeE
Confidence 445999999999999999999754 7899999999999999999875433 46999999875421 12346899999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++.... .+...+++++.++|||||++++.+
T Consensus 134 ~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 134 FGQVSP-----MDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp EECCCT-----TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred EEcCcH-----HHHHHHHHHHHHHcCCCcEEEEeC
Confidence 986542 345678999999999999999843
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.8e-12 Score=121.36 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=108.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHh---cCCCCCCCceEEE
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTA---NLKPPFLAKLITK 434 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~---n~~~~~~~~i~~~ 434 (564)
..+.+|+.|+. ..++.+|||||||+|.++..++... ..+|+++|+++.+++.+++|+.. |++. +++.+.
T Consensus 23 ~D~~lL~~~~~----~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~---~~v~~~ 95 (260)
T 2ozv_A 23 MDAMLLASLVA----DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS---ARIEVL 95 (260)
T ss_dssp CHHHHHHHTCC----CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG---GGEEEE
T ss_pred cHHHHHHHHhc----ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc---ceEEEE
Confidence 56777777753 3367799999999998888888776 46999999999999999999988 7663 468888
Q ss_pred EeecCCCccchhh-hhhcCCCccEEEEeceeeCC------------------CChHHHHHHHHHHhhccCCCCCCCCCcE
Q 008457 435 RLEWGNRDHIEAI-KEENNEGFEVILGTDVSYIP------------------EAILPLFATAKELTASSNKSLREDQQPA 495 (564)
Q Consensus 435 ~l~w~~~~~~~~~-~~~~~~~fD~Ii~~d~~y~~------------------~~~~~l~~~~~~ll~~~~g~~~~~~~~~ 495 (564)
..|+.+... ... ..+..++||+|+++...+.. ..+..+++.+.++| +|+| .
T Consensus 96 ~~D~~~~~~-~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~L-kpgG--------~ 165 (260)
T 2ozv_A 96 EADVTLRAK-ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIM-VSGG--------Q 165 (260)
T ss_dssp ECCTTCCHH-HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHE-EEEE--------E
T ss_pred eCCHHHHhh-hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHc-CCCC--------E
Confidence 777754310 000 01345789999987544432 24789999999999 9988 8
Q ss_pred EEEEEeeccCChhHHHHHHHHcCCeEEEEcCCC
Q 008457 496 FILCHIFRQVDEPSMLSAATQCGFRLVDKWPSK 528 (564)
Q Consensus 496 ~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~ 528 (564)
+++.+...+ ...+++.+.+. |...++..+.
T Consensus 166 l~~~~~~~~--~~~~~~~l~~~-~~~~~i~~v~ 195 (260)
T 2ozv_A 166 LSLISRPQS--VAEIIAACGSR-FGGLEITLIH 195 (260)
T ss_dssp EEEEECGGG--HHHHHHHHTTT-EEEEEEEEEE
T ss_pred EEEEEcHHH--HHHHHHHHHhc-CCceEEEEEc
Confidence 887765543 34577777764 8777775543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.34 E-value=8e-12 Score=117.11 Aligned_cols=127 Identities=8% Similarity=0.058 Sum_probs=102.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCC-ceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS-SIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~-~fD~V 150 (564)
.++.+|||||||+|.++..+++.+|..+|+++|+++.+++.|+++....+ .++++.++|.... +..+ +||+|
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~-----~~~~~~~D~I 94 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAV-----IEKKDAIDTI 94 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-----CCGGGCCCEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhc-----cCccccccEE
Confidence 56789999999999999999998777799999999999999999876544 4689999998542 2333 59999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
++..+-- +.+..+|.+..+.|+++|+|++.-.. ..+.+++++.+
T Consensus 95 viagmGg----~lI~~IL~~~~~~L~~~~~lIlq~~~--------------------------------~~~~lr~~L~~ 138 (244)
T 3gnl_A 95 VIAGMGG----TLIRTILEEGAAKLAGVTKLILQPNI--------------------------------AAWQLREWSEQ 138 (244)
T ss_dssp EEEEECH----HHHHHHHHHTGGGGTTCCEEEEEESS--------------------------------CHHHHHHHHHH
T ss_pred EEeCCch----HHHHHHHHHHHHHhCCCCEEEEEcCC--------------------------------ChHHHHHHHHH
Confidence 8754433 45778999999999999999986311 47788999999
Q ss_pred CCCcEEEeeee
Q 008457 231 NGFDVEELGLC 241 (564)
Q Consensus 231 aGf~~~~~~~~ 241 (564)
.||.+++....
T Consensus 139 ~Gf~i~~E~lv 149 (244)
T 3gnl_A 139 NNWLITSEAIL 149 (244)
T ss_dssp HTEEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 99999775544
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=122.55 Aligned_cols=110 Identities=12% Similarity=0.171 Sum_probs=88.6
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCC-CCCCc
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQ-ISPSS 146 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~-~~~~~ 146 (564)
++...++.+|||||||+|..+..+++..++.+|+++|+++.+++.|+++....+ .+++++++|+.... + ..+++
T Consensus 66 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~ 142 (232)
T 3ntv_A 66 LIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQF---ENVNDKV 142 (232)
T ss_dssp HHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCH---HHHTTSC
T ss_pred HHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH---HhhccCC
Confidence 333357899999999999999999997778999999999999999999875444 47999999986431 1 12678
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
||+|++.... .....+++++.++|||||++++.+..
T Consensus 143 fD~V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 143 YDMIFIDAAK-----AQSKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp EEEEEEETTS-----SSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred ccEEEEcCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence 9999986542 34667999999999999999885443
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=122.10 Aligned_cols=145 Identities=14% Similarity=0.209 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc----CCCeeEEEecCCcccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
.++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|+++.... ..++.+... .++ +...||.
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~d~ 106 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVL----ADF----EQGRPSF 106 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCG----GGC----CSCCCSE
T ss_pred CCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCH----hHc----CcCCCCE
Confidence 457799999999999999999882 249999999999999987754311 112222110 111 2223455
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHH
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFK 229 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 229 (564)
+.+..++.++ ..++++++++|||||.+++.. .+... .. ...+...-.. .....+..+.+++.++++
T Consensus 107 ~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~~e-~~----~~~~~~~G~~--~d~~~~~~~~~~l~~~l~ 172 (232)
T 3opn_A 107 TSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQFE-AG----REQVGKNGII--RDPKVHQMTIEKVLKTAT 172 (232)
T ss_dssp EEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHHHH-SC----HHHHC-CCCC--CCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Ccccc-cC----HHHhCcCCee--cCcchhHHHHHHHHHHHH
Confidence 5555555444 468999999999999999864 11110 00 0000000000 011222357899999999
Q ss_pred hCCCcEEEeeee
Q 008457 230 ENGFDVEELGLC 241 (564)
Q Consensus 230 ~aGf~~~~~~~~ 241 (564)
++||+++.+...
T Consensus 173 ~aGf~v~~~~~~ 184 (232)
T 3opn_A 173 QLGFSVKGLTFS 184 (232)
T ss_dssp HHTEEEEEEEEC
T ss_pred HCCCEEEEEEEc
Confidence 999998876654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-12 Score=127.13 Aligned_cols=109 Identities=19% Similarity=0.143 Sum_probs=86.9
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+ |++.|+++....+ .+++++++|+... +++
T Consensus 55 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~ 128 (340)
T 2fyt_A 55 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV----HLP 128 (340)
T ss_dssp HHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS----CCS
T ss_pred HHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh----cCC
Confidence 33344444678999999999999999998873 45999999997 9999988765433 5799999998653 346
Q ss_pred CCceeEEEEccc---ccCCChhHHHHHHHHHHhccCCCeEEE
Q 008457 144 PSSIDIVTMVFV---LSAVSPEKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 144 ~~~fD~V~~~~v---l~~~~~~~~~~~l~~~~r~LkpgG~li 182 (564)
+++||+|++..+ +.+. ..+..++.++.++|||||.++
T Consensus 129 ~~~~D~Ivs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 129 VEKVDVIISEWMGYFLLFE--SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCEEEEEECCCBTTBTTT--CHHHHHHHHHHHHEEEEEEEE
T ss_pred CCcEEEEEEcCchhhccCH--HHHHHHHHHHHhhcCCCcEEE
Confidence 789999999773 4444 477889999999999999998
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=116.98 Aligned_cols=142 Identities=18% Similarity=0.140 Sum_probs=106.1
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
.+.+++.... .++.+|||+|||+|.++..++. .+.+|+++|+++.+++.+++++..++.. .++.+...|+.+..
T Consensus 55 ~l~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~ 128 (235)
T 3lcc_A 55 LIVHLVDTSS--LPLGRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSPKA---EYFSFVKEDVFTWR 128 (235)
T ss_dssp HHHHHHHTTC--SCCEEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSGGG---GGEEEECCCTTTCC
T ss_pred HHHHHHHhcC--CCCCCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccCCC---cceEEEECchhcCC
Confidence 4555554432 2446999999999977766654 4568999999999999999998764432 45777777765431
Q ss_pred cchhhhhhcCCCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------cCChhHHH
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------QVDEPSML 511 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r---------~~~~~~~~ 511 (564)
+..+||+|+++.++++.. ....+++.+.++| +|+| .+++..... ..+...+.
T Consensus 129 --------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (235)
T 3lcc_A 129 --------PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELL-KPDG--------ELITLMYPITDHVGGPPYKVDVSTFE 191 (235)
T ss_dssp --------CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHE-EEEE--------EEEEEECCCSCCCSCSSCCCCHHHHH
T ss_pred --------CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHC-CCCc--------EEEEEEecccccCCCCCccCCHHHHH
Confidence 345899999999988766 8999999999999 9988 666654322 12345778
Q ss_pred HHHHHcCCeEEEEcCC
Q 008457 512 SAATQCGFRLVDKWPS 527 (564)
Q Consensus 512 ~~~~~~g~~~~~~~~~ 527 (564)
+.+.++||+++++...
T Consensus 192 ~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 192 EVLVPIGFKAVSVEEN 207 (235)
T ss_dssp HHHGGGTEEEEEEEEC
T ss_pred HHHHHcCCeEEEEEec
Confidence 8888999999988654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=116.48 Aligned_cols=129 Identities=16% Similarity=0.222 Sum_probs=99.1
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++++..++ ++.+...|..+. +..
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~d~~~~-------~~~- 107 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL------KVKYIEADYSKY-------DFE- 107 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT------TEEEEESCTTTC-------CCC-
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC------CEEEEeCchhcc-------CCC-
Confidence 4577899999999998888777765 5699999999999999999865432 567776665543 112
Q ss_pred CCccEEEEeceeeCCCChH--HHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc--------------------------
Q 008457 453 EGFEVILGTDVSYIPEAIL--PLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------------- 504 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~--~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-------------------------- 504 (564)
++||+|++..++++..... .+++.+.++| +|+| .++++.....
T Consensus 108 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (234)
T 3dtn_A 108 EKYDMVVSALSIHHLEDEDKKELYKRSYSIL-KESG--------IFINADLVHGETAFIENLNKTIWRQYVENSGLTEEE 178 (234)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHH
T ss_pred CCceEEEEeCccccCCHHHHHHHHHHHHHhc-CCCc--------EEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHH
Confidence 6899999999998886554 5999999999 9988 7777653321
Q ss_pred -------------CChhHHHHHHHHcCCeEEEEc
Q 008457 505 -------------VDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 505 -------------~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+...+.+.++++||+.++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 212 (234)
T 3dtn_A 179 IAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCI 212 (234)
T ss_dssp HHTTC----CCCCCBHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhcccccccCHHHHHHHHHHcCCCceeee
Confidence 122355668899999999886
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-12 Score=121.19 Aligned_cols=109 Identities=19% Similarity=0.258 Sum_probs=84.0
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
+...++.+|||+|||+|.++..+++.. |+.+|+|+|+|+.+++.+.+..... .++.+.++|+..... .++.+++||+
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~-~~~~~~~~D~ 150 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHK-YRMLIAMVDV 150 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGG-GGGGCCCEEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhh-hcccCCcEEE
Confidence 334678999999999999999999884 6689999999988776665544322 578999999875321 1335678999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
|++... .++....++.++.++|||||.+++..
T Consensus 151 V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 151 IFADVA----QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp EEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 999554 22455677899999999999999953
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.6e-12 Score=122.95 Aligned_cols=138 Identities=19% Similarity=0.141 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeC-ChHHHHHHHhcc-----cccC------CCeeEEEecCCccc--cc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDF-SPRAVNLVMTHK-----DFTE------TRVSTFVCDLISDD--LS 139 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~-s~~~l~~a~~~~-----~~~~------~~i~~~~~d~~~~~--~~ 139 (564)
.++.+|||+|||+|.++..+++.. ..+|+++|+ |+.+++.|+++. ...+ .++.+...+..... +.
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 567899999999999999888873 348999999 899999999876 3222 25777766654311 10
Q ss_pred CCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccC---C--CeEEEEEecCCCchhhhhhcccccccccceeecCCCc
Q 008457 140 RQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLK---P--TGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGT 214 (564)
Q Consensus 140 ~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lk---p--gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (564)
..++.++||+|++..+++|. .+...+++.+.++|+ | ||.+++........
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~----------------------- 211 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPH----------------------- 211 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC---------------------------
T ss_pred hhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc-----------------------
Confidence 00135789999999999987 578899999999999 9 99887742221100
Q ss_pred eeeccCHHHHHHHHHhCC-CcEEEee
Q 008457 215 RAFYFSNDFLTSLFKENG-FDVEELG 239 (564)
Q Consensus 215 ~~~~~~~~~l~~~l~~aG-f~~~~~~ 239 (564)
.......+.+.+++.| |++..+.
T Consensus 212 --~~~~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 212 --LAERDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp ------CTHHHHHHHHSTTEEEEEEE
T ss_pred --cchhHHHHHHHHHhcCCEEEEEec
Confidence 0002345567888999 9887663
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-11 Score=112.68 Aligned_cols=134 Identities=14% Similarity=0.153 Sum_probs=99.9
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
.+.+++.......++.+|||+|||+|.++..++. ...+|+++|+++.+++.+++|+..++. .++.+...|+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~d~~~-- 94 (183)
T 2yxd_A 22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI----KNCQIIKGRAED-- 94 (183)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC----CSEEEEESCHHH--
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC----CcEEEEECCccc--
Confidence 3444444433445788999999999977777766 677999999999999999999998876 356666555432
Q ss_pred cchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEE
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV 522 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~ 522 (564)
.++.++||+|++..+ .....+++.+.++ |+| .+++...... ....+.+.+++.|+.++
T Consensus 95 ------~~~~~~~D~i~~~~~----~~~~~~l~~~~~~---~gG--------~l~~~~~~~~-~~~~~~~~l~~~g~~~~ 152 (183)
T 2yxd_A 95 ------VLDKLEFNKAFIGGT----KNIEKIIEILDKK---KIN--------HIVANTIVLE-NAAKIINEFESRGYNVD 152 (183)
T ss_dssp ------HGGGCCCSEEEECSC----SCHHHHHHHHHHT---TCC--------EEEEEESCHH-HHHHHHHHHHHTTCEEE
T ss_pred ------cccCCCCcEEEECCc----ccHHHHHHHHhhC---CCC--------EEEEEecccc-cHHHHHHHHHHcCCeEE
Confidence 233468999999888 6788888888877 777 7777654332 23467888899999888
Q ss_pred EEc
Q 008457 523 DKW 525 (564)
Q Consensus 523 ~~~ 525 (564)
.+.
T Consensus 153 ~~~ 155 (183)
T 2yxd_A 153 AVN 155 (183)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.2e-12 Score=113.38 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=95.3
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||+|||+|.++..++..+. +|+++|+++.+++.++++ . .++.+...| .+++.++
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--~-------~~v~~~~~d----------~~~~~~~ 75 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK--F-------DSVITLSDP----------KEIPDNS 75 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH--C-------TTSEEESSG----------GGSCTTC
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh--C-------CCcEEEeCC----------CCCCCCc
Confidence 3677999999999988877777665 999999999999999988 1 345554333 1345679
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-----------CChhHHHHHHHHcCCeEEE
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----------VDEPSMLSAATQCGFRLVD 523 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-----------~~~~~~~~~~~~~g~~~~~ 523 (564)
||+|+++.++++..+...+++.+.++| +|+| .+++....+. .+...+.+.+. ||++.+
T Consensus 76 ~D~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~ 144 (170)
T 3i9f_A 76 VDFILFANSFHDMDDKQHVISEVKRIL-KDDG--------RVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEK 144 (170)
T ss_dssp EEEEEEESCSTTCSCHHHHHHHHHHHE-EEEE--------EEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEE
T ss_pred eEEEEEccchhcccCHHHHHHHHHHhc-CCCC--------EEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEE
Confidence 999999999999999999999999999 9988 7777655432 23335556655 999999
Q ss_pred EcCC
Q 008457 524 KWPS 527 (564)
Q Consensus 524 ~~~~ 527 (564)
....
T Consensus 145 ~~~~ 148 (170)
T 3i9f_A 145 RFNP 148 (170)
T ss_dssp EECS
T ss_pred ccCC
Confidence 8754
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=126.84 Aligned_cols=142 Identities=11% Similarity=0.057 Sum_probs=99.4
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCC-------------------------C
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF-------------------------L 428 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~-------------------------~ 428 (564)
..++.+|||||||+|.++.+++..+..+|+++|+|+.+++.+++++..+..... .
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 457889999999999777766666767899999999999999998876431100 0
Q ss_pred CceE-EEEeecCCCccchhhhhhcCCCccEEEEeceeeCC----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 429 AKLI-TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP----EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 429 ~~i~-~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
..+. +...|..+...+ .+...++||+|+++-++.+. .+...+++.+.++| ||+| .++++....
T Consensus 133 ~~i~~~~~~D~~~~~~~---~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~L-KPGG--------~li~~~~~~ 200 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPL---APAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLL-KPGG--------HLVTTVTLR 200 (263)
T ss_dssp HHEEEEEECCTTSSSTT---TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE-EEEE--------EEEEEEESS
T ss_pred hhhheEEeccccCCCCC---CccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHc-CCCc--------EEEEEEeec
Confidence 1122 444443321111 11234689999999888652 45578889999999 9988 777775322
Q ss_pred --------------cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 --------------QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 --------------~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+...+.+.+.++||.++++...
T Consensus 201 ~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 201 LPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp CCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred CccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 124557888999999999988744
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.1e-12 Score=119.72 Aligned_cols=158 Identities=12% Similarity=-0.004 Sum_probs=107.5
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..++.+|||||||+|.++..++.. ...+|+++|.++.+++.+++|+..+++. ++.+...++.+... .+...
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~----~v~~~~~d~~~~~~----~~~~~ 149 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK----GARALWGRAEVLAR----EAGHR 149 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS----SEEEEECCHHHHTT----STTTT
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC----ceEEEECcHHHhhc----ccccC
Confidence 346789999999999777766655 4569999999999999999999998873 46666554422100 00123
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-hhHHHHHHHHcCCeEEEEcCCCCCC
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-EPSMLSAATQCGFRLVDKWPSKNSA 531 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~g~~~~~~~~~~~~~ 531 (564)
++||+|++..+ ..++.+++.+.++| +|+| .+++........ ...+...+.+.|+++.++.....|.
T Consensus 150 ~~fD~I~s~a~----~~~~~ll~~~~~~L-kpgG--------~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~ 216 (249)
T 3g89_A 150 EAYARAVARAV----APLCVLSELLLPFL-EVGG--------AAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPL 216 (249)
T ss_dssp TCEEEEEEESS----CCHHHHHHHHGGGE-EEEE--------EEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTT
T ss_pred CCceEEEECCc----CCHHHHHHHHHHHc-CCCe--------EEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCC
Confidence 68999997643 56889999999999 9988 666544322221 2356777888999999987765555
Q ss_pred CCccccccccccCCCCcccCC
Q 008457 532 SPSESIISSWFSENGHEVYLP 552 (564)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~ 552 (564)
....+....+-....-+..||
T Consensus 217 ~~~~R~l~~~~k~~~t~~~yP 237 (249)
T 3g89_A 217 SGEARHLVVLEKTAPTPPAYP 237 (249)
T ss_dssp TCCEEEEEEEEECSCCCTTCS
T ss_pred CCCcEEEEEEEeCCCCCCCCC
Confidence 444443332222334444444
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=115.93 Aligned_cols=117 Identities=10% Similarity=0.085 Sum_probs=88.5
Q ss_pred HHHhhhcc-CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCC
Q 008457 65 KEWGRYFS-GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 65 ~~~~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~ 141 (564)
..+.+.+. ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++....+ .+++++++|+... + +
T Consensus 20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~--~ 95 (177)
T 2esr_A 20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-I--D 95 (177)
T ss_dssp HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-H--H
T ss_pred HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh-H--H
Confidence 33334443 357889999999999999999887 45699999999999999998875443 3688999988542 1 1
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHH--hccCCCeEEEEEecCC
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIK--KVLKPTGYVLFRDYAI 188 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~--r~LkpgG~lii~~~~~ 188 (564)
...++||+|+++..++. .....+++.+. ++|+|||.+++.....
T Consensus 96 ~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 96 CLTGRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HBCSCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred hhcCCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 13457999999876542 35566777776 9999999999976554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-12 Score=123.54 Aligned_cols=129 Identities=16% Similarity=0.066 Sum_probs=101.1
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCC
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
..+...++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|+++....+ .++.+..+|+... ++++
T Consensus 106 ~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~ 180 (277)
T 1o54_A 106 MMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-----FDEK 180 (277)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-----CSCC
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-----ccCC
Confidence 3344567899999999999999999998 678899999999999999998865433 4788988888643 3567
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLT 225 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (564)
+||+|++. .+ ++..+++++.++|+|||.+++.+.... ...++.
T Consensus 181 ~~D~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~------------------------------~~~~~~ 223 (277)
T 1o54_A 181 DVDALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCPTTN------------------------------QVQETL 223 (277)
T ss_dssp SEEEEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEESSHH------------------------------HHHHHH
T ss_pred ccCEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCCHH------------------------------HHHHHH
Confidence 89999983 32 445789999999999999999764310 235566
Q ss_pred HHHHhCCCcEEEee
Q 008457 226 SLFKENGFDVEELG 239 (564)
Q Consensus 226 ~~l~~aGf~~~~~~ 239 (564)
+.+++.||..++..
T Consensus 224 ~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 224 KKLQELPFIRIEVW 237 (277)
T ss_dssp HHHHHSSEEEEEEE
T ss_pred HHHHHCCCceeEEE
Confidence 77888999876643
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=112.46 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=92.3
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
.++..+... .+.++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.+++|+..++. .++.+..-+.
T Consensus 10 ~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~----~~v~~~~~~~---- 79 (185)
T 3mti_A 10 HMSHDFLAE-VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI----ENTELILDGH---- 79 (185)
T ss_dssp HHHHHHHHT-TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC----CCEEEEESCG----
T ss_pred HHHHHHHHH-hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC----CcEEEEeCcH----
Confidence 344444432 2347889999999999888777766 77999999999999999999998876 3455554222
Q ss_pred cchhhhhhcCCCccEEEEeceeeC----------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC---h-h
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYI----------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD---E-P 508 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~----------~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~---~-~ 508 (564)
..+..+.+++||+|+++ ..|. ......+++.+.++| +|+| .++++....... + .
T Consensus 80 --~~l~~~~~~~fD~v~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~ 147 (185)
T 3mti_A 80 --ENLDHYVREPIRAAIFN-LGYLPSADKSVITKPHTTLEAIEKILDRL-EVGG--------RLAIMIYYGHDGGDMEKD 147 (185)
T ss_dssp --GGGGGTCCSCEEEEEEE-EC-----------CHHHHHHHHHHHHHHE-EEEE--------EEEEEEC------CHHHH
T ss_pred --HHHHhhccCCcCEEEEe-CCCCCCcchhcccChhhHHHHHHHHHHhc-CCCc--------EEEEEEeCCCCCCHHHHH
Confidence 22222346789999765 2232 234457789999999 9988 776655432211 1 2
Q ss_pred ---HHHHHHHHcCCeEEEEc
Q 008457 509 ---SMLSAATQCGFRLVDKW 525 (564)
Q Consensus 509 ---~~~~~~~~~g~~~~~~~ 525 (564)
.++..+...+|.+.+..
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~ 167 (185)
T 3mti_A 148 AVLEYVIGLDQRVFTAMLYQ 167 (185)
T ss_dssp HHHHHHHHSCTTTEEEEEEE
T ss_pred HHHHHHHhCCCceEEEEEeh
Confidence 33444445678887765
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-12 Score=129.18 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++....+ .+++++++|+... ++++++||+|+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~Ii 138 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV----ELPVEKVDIII 138 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC----CCSSSCEEEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc----cCCCCceEEEE
Confidence 57899999999999999999988 345999999995 9999998765433 4599999999754 34678999999
Q ss_pred EcccccCC-ChhHHHHHHHHHHhccCCCeEEEE
Q 008457 152 MVFVLSAV-SPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 152 ~~~vl~~~-~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+..+.+++ ....+..++.++.++|||||.++.
T Consensus 139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 97765444 235778899999999999999874
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-12 Score=125.97 Aligned_cols=113 Identities=16% Similarity=0.115 Sum_probs=90.8
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSR 140 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 140 (564)
+...+.+.+...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.|+++....+ .++++.++|+....
T Consensus 63 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~--- 139 (317)
T 1dl5_A 63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV--- 139 (317)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC---
T ss_pred HHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc---
Confidence 334445556667899999999999999999998855 4679999999999999998865433 45899999986421
Q ss_pred CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.+.++||+|++..+++|++ +++.++|||||++++....
T Consensus 140 -~~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 140 -PEFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp -GGGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred -ccCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 1357899999999999995 4678899999999998543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=122.43 Aligned_cols=139 Identities=12% Similarity=0.081 Sum_probs=101.9
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
..+...++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.++++....+ .++.++++|+..... ..++
T Consensus 112 ~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~----~~~~ 187 (315)
T 1ixk_A 112 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE----LNVE 187 (315)
T ss_dssp HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG----GCCC
T ss_pred HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc----cccc
Confidence 345567889999999999999999998853 5799999999999999998875444 378898888864321 3568
Q ss_pred eeEEEEcc------cccCCC-------hh-------HHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccc
Q 008457 147 IDIVTMVF------VLSAVS-------PE-------KMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISEN 206 (564)
Q Consensus 147 fD~V~~~~------vl~~~~-------~~-------~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~ 206 (564)
||+|++.. ++++.+ .+ ....+|+++.++|||||.+++++......
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~--------------- 252 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE--------------- 252 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG---------------
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH---------------
Confidence 99999842 233222 11 12589999999999999999976543221
Q ss_pred eeecCCCceeeccCHHHHHHHHHhCCCcEEEe
Q 008457 207 FYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
-+.+.+..++++.||+.+.+
T Consensus 253 ------------Ene~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 253 ------------ENEFVIQWALDNFDVELLPL 272 (315)
T ss_dssp ------------GTHHHHHHHHHHSSEEEECC
T ss_pred ------------HhHHHHHHHHhcCCCEEecC
Confidence 13556677888888877644
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=118.32 Aligned_cols=111 Identities=9% Similarity=0.032 Sum_probs=85.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++....+ .+++++++|+.......+..+++||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 46789999999999999988875 35799999999999999998865433 4689999998642211112367899999
Q ss_pred EcccccCCChhHHHHHHHHH--HhccCCCeEEEEEecCC
Q 008457 152 MVFVLSAVSPEKMSLVLQNI--KKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~--~r~LkpgG~lii~~~~~ 188 (564)
++..++.. .....++.+ .++|+|||.+++.....
T Consensus 122 ~~~~~~~~---~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 122 LDPPYAKQ---EIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp ECCCGGGC---CHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ECCCCCch---hHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 98775533 345566666 89999999999976554
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=115.90 Aligned_cols=124 Identities=13% Similarity=0.113 Sum_probs=95.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++.. ..+|+++|+++.+++.+++++. .++.+...|..+. +.. ++|
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~d~~~~-------~~~-~~f 107 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP--------KEFSITEGDFLSF-------EVP-TSI 107 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC--------TTCCEESCCSSSC-------CCC-SCC
T ss_pred CCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC--------CceEEEeCChhhc-------CCC-CCe
Confidence 6789999999999877777766 5689999999999999998854 2344444444332 122 699
Q ss_pred cEEEEeceeeCCCChHH--HHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-----------------------------
Q 008457 456 EVILGTDVSYIPEAILP--LFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------------- 504 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~--l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~----------------------------- 504 (564)
|+|++..++++...... +++.+.++| +|+| .++++.....
T Consensus 108 D~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (220)
T 3hnr_A 108 DTIVSTYAFHHLTDDEKNVAIAKYSQLL-NKGG--------KIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYY 178 (220)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHS-CTTC--------EEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCC
T ss_pred EEEEECcchhcCChHHHHHHHHHHHHhc-CCCC--------EEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhc
Confidence 99999999999887766 999999999 9988 7777753311
Q ss_pred CChhHHHHHHHHcCCeEEEEc
Q 008457 505 VDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 505 ~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+...+.+.++++||+++.+.
T Consensus 179 ~~~~~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 179 TRIPVMQTIFENNGFHVTFTR 199 (220)
T ss_dssp CBHHHHHHHHHHTTEEEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEee
Confidence 123467788889999998875
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=117.74 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=95.0
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
+.++.+|||||||+|.++..++..+ .+|+++|+|+.+++.++++ +.+... +..+.+.+++++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~------------~~~~~~-----d~~~~~~~~~~~ 100 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEG-IESIGVDINEDMIKFCEGK------------FNVVKS-----DAIEYLKSLPDK 100 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHT-CCEEEECSCHHHHHHHHTT------------SEEECS-----CHHHHHHTSCTT
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCC-CcEEEEECCHHHHHHHHhh------------cceeec-----cHHHHhhhcCCC
Confidence 3467899999999998887777664 4799999999999998876 122211 111112245678
Q ss_pred CccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------------cCChhHHHHHH
Q 008457 454 GFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----------------QVDEPSMLSAA 514 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-----------------~~~~~~~~~~~ 514 (564)
+||+|++..++.+.. ....+++.+.++| +|+| .+++..... ..+...+.+.+
T Consensus 101 ~fD~i~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 171 (240)
T 3dli_A 101 YLDGVMISHFVEHLDPERLFELLSLCYSKM-KYSS--------YIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFIL 171 (240)
T ss_dssp CBSEEEEESCGGGSCGGGHHHHHHHHHHHB-CTTC--------CEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHH
T ss_pred CeeEEEECCchhhCCcHHHHHHHHHHHHHc-CCCc--------EEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHH
Confidence 999999999999877 6699999999999 9988 666665432 12335677888
Q ss_pred HHcCCeEEEEcCC
Q 008457 515 TQCGFRLVDKWPS 527 (564)
Q Consensus 515 ~~~g~~~~~~~~~ 527 (564)
.++||+++++...
T Consensus 172 ~~aGf~~~~~~~~ 184 (240)
T 3dli_A 172 EYLGFRDVKIEFF 184 (240)
T ss_dssp HHHTCEEEEEEEE
T ss_pred HHCCCeEEEEEEe
Confidence 9999999988543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=122.55 Aligned_cols=114 Identities=16% Similarity=0.199 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHh--CCCcEEEEEeCChHHHHHHHhccccc---CC--C---------------------
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFT---ET--R--------------------- 125 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~~iD~s~~~l~~a~~~~~~~---~~--~--------------------- 125 (564)
.++.+|||+|||+|.++..+++. .++.+|+|+|+|+.+++.|+++.... +. +
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 46789999999999999999987 66789999999999999999765432 11 1
Q ss_pred ----ee-------------EEEecCCcccccCCC-CCCceeEEEEcccccCCC-------hhHHHHHHHHHHhccCCCeE
Q 008457 126 ----VS-------------TFVCDLISDDLSRQI-SPSSIDIVTMVFVLSAVS-------PEKMSLVLQNIKKVLKPTGY 180 (564)
Q Consensus 126 ----i~-------------~~~~d~~~~~~~~~~-~~~~fD~V~~~~vl~~~~-------~~~~~~~l~~~~r~LkpgG~ 180 (564)
++ +.++|+........+ ..++||+|+|+..+.+.. .+....+++++.++|+|||+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 56 889998642100000 234899999987655443 25677899999999999999
Q ss_pred EEEEecC
Q 008457 181 VLFRDYA 187 (564)
Q Consensus 181 lii~~~~ 187 (564)
+++....
T Consensus 210 l~~~~~~ 216 (250)
T 1o9g_A 210 IAVTDRS 216 (250)
T ss_dssp EEEEESS
T ss_pred EEEeCcc
Confidence 9985443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.32 E-value=6.7e-12 Score=119.99 Aligned_cols=126 Identities=11% Similarity=0.100 Sum_probs=98.2
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||||||+|.++..++..+. +|+++|+++.+++.++++... ++.+...|..+. .++++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~--------~v~~~~~d~~~~--------~~~~~ 103 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD--------GITYIHSRFEDA--------QLPRR 103 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS--------CEEEEESCGGGC--------CCSSC
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC--------CeEEEEccHHHc--------CcCCc
Confidence 3677999999999977777766554 799999999999999987532 355554443221 24578
Q ss_pred ccEEEEeceeeCCCChHHHHHHHH-HHhhccCCCCCCCCCcEEEEEEeecc-----------------------------
Q 008457 455 FEVILGTDVSYIPEAILPLFATAK-ELTASSNKSLREDQQPAFILCHIFRQ----------------------------- 504 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~-~ll~~~~g~~~~~~~~~~~~~~~~r~----------------------------- 504 (564)
||+|++..++++..+...+++.+. ++| +|+| .++++...+.
T Consensus 104 fD~v~~~~~l~~~~~~~~~l~~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (250)
T 2p7i_A 104 YDNIVLTHVLEHIDDPVALLKRINDDWL-AEGG--------RLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHR 174 (250)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHTTE-EEEE--------EEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCC
T ss_pred ccEEEEhhHHHhhcCHHHHHHHHHHHhc-CCCC--------EEEEEcCChHHHHHHHHHHcCccccchhccccccccccc
Confidence 999999999999999999999999 999 9988 7777764321
Q ss_pred --CChhHHHHHHHHcCCeEEEEcC
Q 008457 505 --VDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 505 --~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
.+...+.+.+.++||+++++..
T Consensus 175 ~~~~~~~~~~~l~~~Gf~~~~~~~ 198 (250)
T 2p7i_A 175 CTYALDTLERDASRAGLQVTYRSG 198 (250)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCHHHHHHHHHHCCCeEEEEee
Confidence 2345678888999999998853
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-12 Score=116.22 Aligned_cols=125 Identities=14% Similarity=0.051 Sum_probs=96.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC-
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE- 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~- 453 (564)
++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.+++|+..|++. +++.+..-|+.+. ++.+
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~---~~i~~~~~d~l~~--------l~~~~ 83 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK---EKIQVRLANGLAA--------FEETD 83 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT---TTEEEEECSGGGG--------CCGGG
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---ceEEEEECchhhh--------cccCc
Confidence 67799999999998888888776 458999999999999999999999985 5688877665321 2223
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
+||+|+.+.. ....+..++......| +++| .++++.. .....+.+.+.+.||.+.+-.
T Consensus 84 ~~D~IviaG~--Gg~~i~~Il~~~~~~L-~~~~--------~lVlq~~---~~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 84 QVSVITIAGM--GGRLIARILEEGLGKL-ANVE--------RLILQPN---NREDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp CCCEEEEEEE--CHHHHHHHHHHTGGGC-TTCC--------EEEEEES---SCHHHHHHHHHHTTEEEEEEE
T ss_pred CCCEEEEcCC--ChHHHHHHHHHHHHHh-CCCC--------EEEEECC---CCHHHHHHHHHHCCCEEEEEE
Confidence 6999886654 2234677788888888 7766 7777655 345678889999999988753
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-11 Score=118.64 Aligned_cols=101 Identities=22% Similarity=0.382 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||+|.++..+++..++.+|+|+|+|+.+++.|+++. .++.+...|+... ++++++||+|++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~----~~~~~~fD~v~~~ 155 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRL----PFSDTSMDAIIRI 155 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSC----SBCTTCEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhC----CCCCCceeEEEEe
Confidence 5788999999999999999999877889999999999999998875 3578888888543 4577899999997
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL 191 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~ 191 (564)
.+.. +++++.++|||||.+++.++.....
T Consensus 156 ~~~~---------~l~~~~~~L~pgG~l~~~~~~~~~~ 184 (269)
T 1p91_A 156 YAPC---------KAEELARVVKPGGWVITATPGPRHL 184 (269)
T ss_dssp SCCC---------CHHHHHHHEEEEEEEEEEEECTTTT
T ss_pred CChh---------hHHHHHHhcCCCcEEEEEEcCHHHH
Confidence 6532 4789999999999999998776543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.2e-11 Score=110.60 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=78.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCC--CcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc-------------
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYP--DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL------------- 138 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~--~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~------------- 138 (564)
.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.+ ...++.+.++|+.....
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CCTTCEEEECCTTTTSSCCC----------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CCCCceEEEccccchhhhhhcccccccccc
Confidence 5678999999999999999999876 6899999999831 12468888998865420
Q ss_pred --------cCCCCCCceeEEEEcccccCCCh--hH-------HHHHHHHHHhccCCCeEEEEEecC
Q 008457 139 --------SRQISPSSIDIVTMVFVLSAVSP--EK-------MSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 139 --------~~~~~~~~fD~V~~~~vl~~~~~--~~-------~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
...+++++||+|++..++++... .+ ...+++++.++|||||.+++..+.
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 00035679999999888776421 11 124889999999999999986543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.3e-12 Score=127.67 Aligned_cols=113 Identities=22% Similarity=0.220 Sum_probs=90.7
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~ 142 (564)
..+.+.+...++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++....+ .+++++.+|+....+
T Consensus 40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~---- 113 (348)
T 2y1w_A 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL---- 113 (348)
T ss_dssp HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC----
T ss_pred HHHHhccccCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC----
Confidence 34444454468899999999999999998886 346999999996 8888888765433 579999999865422
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+ ++||+|++..+++|+..+.....+.++.++|||||.+++.
T Consensus 114 ~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 114 P-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp S-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred C-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 3 6899999999888887667778888999999999999864
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-12 Score=127.87 Aligned_cols=106 Identities=17% Similarity=0.136 Sum_probs=86.8
Q ss_pred HhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh
Q 008457 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI 447 (564)
Q Consensus 368 l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~ 447 (564)
+.++...++|++|||||||+|.++.+++..++++|+++|.++ +++.+++++..|++. ++|.+..-+..+.
T Consensus 75 i~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~---~~i~~i~~~~~~~------ 144 (376)
T 4hc4_A 75 ILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLE---DRVHVLPGPVETV------ 144 (376)
T ss_dssp HHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCT---TTEEEEESCTTTC------
T ss_pred HHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCC---ceEEEEeeeeeee------
Confidence 445566679999999999999888888888889999999986 889999999999985 6787776654432
Q ss_pred hhhcCCCccEEEE---eceeeCCCChHHHHHHHHHHhhccCC
Q 008457 448 KEENNEGFEVILG---TDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 448 ~~~~~~~fD~Ii~---~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
. .+++||+||+ ..++.+...++.++....++| +|+|
T Consensus 145 -~-lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~L-kp~G 183 (376)
T 4hc4_A 145 -E-LPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWL-KEGG 183 (376)
T ss_dssp -C-CSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHE-EEEE
T ss_pred -c-CCccccEEEeecccccccccchhhhHHHHHHhhC-CCCc
Confidence 1 2368999996 455677889999999999999 9987
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-11 Score=117.20 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=104.6
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-C-CEEEEEcCChh------HHHHHHHHHHhcCCCCCCCceEEEEee-cCCCcc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-A-DLVVATDGDSI------ALDLLAQNVTANLKPPFLAKLITKRLE-WGNRDH 443 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~-~~v~~tD~~~~------~l~~~~~n~~~n~~~~~~~~i~~~~l~-w~~~~~ 443 (564)
.+.++.+|||||||+|.++..++... . .+|+++|+++. +++.+++++..++.. .++.+...| +....
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~- 115 (275)
T 3bkx_A 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG---DRLTVHFNTNLSDDL- 115 (275)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG---GGEEEECSCCTTTCC-
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC---CceEEEECChhhhcc-
Confidence 44578899999999998888777763 3 69999999987 999999999877653 457766655 22111
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------------- 503 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-------------------- 503 (564)
.++++++||+|++..++++..+...+++.++.++ +++| .+++.....
T Consensus 116 ----~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~-~~gG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (275)
T 3bkx_A 116 ----GPIADQHFDRVVLAHSLWYFASANALALLFKNMA-AVCD--------HVDVAEWSMQPTALDQIGHLQAAMIQGLL 182 (275)
T ss_dssp ----GGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHT-TTCS--------EEEEEEECSSCSSGGGHHHHHHHHHHHHH
T ss_pred ----CCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHh-CCCC--------EEEEEEecCCCCchhhhhHHHHHHHHHHH
Confidence 1345679999999999999988899888888888 8777 676653221
Q ss_pred -------------cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 -------------QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 -------------~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+...+.+.++++||+++++...
T Consensus 183 ~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 183 YAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred hhccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 122346778888999999998766
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=111.29 Aligned_cols=129 Identities=12% Similarity=0.051 Sum_probs=94.6
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..++.. .++ ...-+.. +.+ +..
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~-~~~~d~~-----~~~-~~~ 91 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS---DRI-AVQQGAP-----RAF-DDV 91 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT---TSE-EEECCTT-----GGG-GGC
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC---CCE-EEecchH-----hhh-hcc
Confidence 34577899999999998887777764 569999999999999999999987763 245 4433322 111 112
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.++||+|+++.++++ ..+++.+.++| +|+| .+++...... ....+.+.+.+.|+++.++.
T Consensus 92 ~~~~D~i~~~~~~~~----~~~l~~~~~~L-~~gG--------~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTA----PGVFAAAWKRL-PVGG--------RLVANAVTVE-SEQMLWALRKQFGGTISSFA 151 (178)
T ss_dssp CSCCSEEEECC-TTC----TTHHHHHHHTC-CTTC--------EEEEEECSHH-HHHHHHHHHHHHCCEEEEEE
T ss_pred CCCCCEEEECCcccH----HHHHHHHHHhc-CCCC--------EEEEEeeccc-cHHHHHHHHHHcCCeeEEEE
Confidence 268999998877765 78999999999 9988 7777654432 23356777888898888764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.7e-12 Score=120.18 Aligned_cols=142 Identities=11% Similarity=0.029 Sum_probs=102.1
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC--------------C-----------C
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP--------------F-----------L 428 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~--------------~-----------~ 428 (564)
..++.+|||||||+|.++..++..+..+|+++|+++.+++.+++++..+.... . .
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 35788999999999977776666655689999999999999999876543100 0 0
Q ss_pred Cce-EEEEeecCCCccchhhhhhcCCCccEEEEeceee----CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-
Q 008457 429 AKL-ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY----IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF- 502 (564)
Q Consensus 429 ~~i-~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y----~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~- 502 (564)
.++ .+...|..+.... .+...++||+|+++.++. +......+++.+.++| +|+| .++++...
T Consensus 134 ~~v~~~~~~d~~~~~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~L-kpgG--------~li~~~~~~ 201 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPL---GGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLL-KPGG--------FLVMVDALK 201 (265)
T ss_dssp HHEEEEEECCTTSSSTT---TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE-EEEE--------EEEEEEESS
T ss_pred hhheeEEEeeeccCCCC---CccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhC-CCCc--------EEEEEecCC
Confidence 115 6666665543211 112237899999999988 6667889999999999 9988 77765421
Q ss_pred -------------ccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 503 -------------RQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 503 -------------r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
+..+...+.+.+.++||+++++...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 239 (265)
T 2i62_A 202 SSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVI 239 (265)
T ss_dssp CCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred CceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEe
Confidence 2234457888899999999988643
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-11 Score=117.81 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=89.9
Q ss_pred HHHHHHhc-CCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 363 LMAAVLAR-NPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 363 ~l~~~l~~-~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
.+.+.+.. ...+.++.+|||+|||+|.++..++.. ..+|+++|+++.+++.+++++ .+. ..++.+...|+.+.
T Consensus 25 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~~~----~~~~~~~~~d~~~~ 98 (263)
T 2yqz_A 25 QIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-AGV----DRKVQVVQADARAI 98 (263)
T ss_dssp HHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-TTS----CTTEEEEESCTTSC
T ss_pred HHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-hcc----CCceEEEEcccccC
Confidence 34455532 233457889999999999877777665 568999999999999999987 222 14577777766432
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
++++++||+|+++.++++..+...+++.+.++| +|+| .+++...
T Consensus 99 -------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~ 142 (263)
T 2yqz_A 99 -------PLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVL-KPGG--------ALLEGWD 142 (263)
T ss_dssp -------CSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHE-EEEE--------EEEEEEE
T ss_pred -------CCCCCCeeEEEECCchhhcCCHHHHHHHHHHHC-CCCc--------EEEEEec
Confidence 234578999999999999889999999999999 9988 7766633
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-11 Score=115.22 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=89.5
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
...+.+.+..... ++.+|||||||+|.++..++..+. +|+++|+++.+++.+++|...++ .++.+...|..+
T Consensus 25 ~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~ 96 (227)
T 1ve3_A 25 IETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-----SNVEFIVGDARK 96 (227)
T ss_dssp HHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-----CCCEEEECCTTS
T ss_pred HHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-----CCceEEECchhc
Confidence 3445566655433 478999999999988877776655 99999999999999999998765 346666666543
Q ss_pred CccchhhhhhcCCCccEEEEece--eeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 441 RDHIEAIKEENNEGFEVILGTDV--SYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 441 ~~~~~~~~~~~~~~fD~Ii~~d~--~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
. ++++++||+|+++++ +++......+++.+.++| +|+| .+++...
T Consensus 97 ~-------~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L-~~gG--------~l~~~~~ 143 (227)
T 1ve3_A 97 L-------SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVL-KPSG--------KFIMYFT 143 (227)
T ss_dssp C-------CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHE-EEEE--------EEEEEEE
T ss_pred C-------CCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHc-CCCc--------EEEEEec
Confidence 2 234568999999999 666667889999999999 9988 6666544
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.8e-11 Score=112.15 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=96.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||||||+|.++..++... ..+|+++|+++.+++.+++|+..+++ .++.+...|+.+. .. .+++++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~----~~v~~~~~d~~~~---~~--~~~~~~ 111 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV----PNIKLLWVDGSDL---TD--YFEDGE 111 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC----SSEEEEECCSSCG---GG--TSCTTC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC----CCEEEEeCCHHHH---Hh--hcCCCC
Confidence 56799999999998888777765 46999999999999999999998876 4577777666532 10 134568
Q ss_pred ccEEEEeceeeCCC--------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 455 FEVILGTDVSYIPE--------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 455 fD~Ii~~d~~y~~~--------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
||+|+++-..-... ....+++.+.++| +|+| .+++........ ....+.+.+.||.+..+.
T Consensus 112 ~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~-~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 112 IDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRIL-PENG--------EIHFKTDNRGLF-EYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHS-CTTC--------EEEEEESCHHHH-HHHHHHHHHHTCEEEEEE
T ss_pred CCEEEEECCCCccccchhhhccCCHHHHHHHHHHc-CCCc--------EEEEEeCCHHHH-HHHHHHHHHCCCeeeecc
Confidence 99999774321111 3478999999999 9988 777765433222 345677788899998876
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=122.22 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh-cCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-NNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~-~~~ 453 (564)
.++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++..++.. .++.+...|..+. ++ .++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-------~~~~~~ 132 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR---FKVFFRAQDSYGR-------HMDLGK 132 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS---SEEEEEESCTTTS-------CCCCSS
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC---ccEEEEECCcccc-------ccCCCC
Confidence 367899999999998777777666669999999999999999998876543 4567776666543 12 356
Q ss_pred CccEEEEeceeeC----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 454 GFEVILGTDVSYI----PEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 454 ~fD~Ii~~d~~y~----~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
+||+|++..++++ ......+++.+.++| +|+| .++++..
T Consensus 133 ~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~ 175 (298)
T 1ri5_A 133 EFDVISSQFSFHYAFSTSESLDIAQRNIARHL-RPGG--------YFIMTVP 175 (298)
T ss_dssp CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTE-EEEE--------EEEEEEE
T ss_pred CcCEEEECchhhhhcCCHHHHHHHHHHHHHhc-CCCC--------EEEEEEC
Confidence 8999999998854 456788999999999 9988 6666643
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-11 Score=110.09 Aligned_cols=126 Identities=20% Similarity=0.263 Sum_probs=97.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++.. ..+|+++|+++.+++.+++|.. ++.+...|..+. ++++++|
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~---------~~~~~~~d~~~~-------~~~~~~~ 108 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFP---------EARWVVGDLSVD-------QISETDF 108 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTTS-------CCCCCCE
T ss_pred CCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhCC---------CCcEEEcccccC-------CCCCCce
Confidence 6789999999999877777766 5699999999999999998752 245555555432 2345689
Q ss_pred cEEEEe-ceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-CChhHHHHHHHHcCCeEEEEcCC
Q 008457 456 EVILGT-DVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-VDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 456 D~Ii~~-d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
|+|+++ +++.+. .....+++.+.++| +|+| .+++...... .+...+.+.+.+.||++.++...
T Consensus 109 D~i~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~G--------~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 109 DLIVSAGNVMGFLAEDGREPALANIHRAL-GADG--------RAVIGFGAGRGWVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred eEEEECCcHHhhcChHHHHHHHHHHHHHh-CCCC--------EEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence 999998 666654 45688999999999 9987 7777766544 45567889999999999998743
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-11 Score=112.10 Aligned_cols=127 Identities=21% Similarity=0.210 Sum_probs=95.7
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||+|||+|.++..++.. +.+|+++|+++.+++.+++++..++. .++.+...|+.+. +. +++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~d~~~~-------~~-~~~ 97 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL----DNLHTRVVDLNNL-------TF-DRQ 97 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC----TTEEEEECCGGGC-------CC-CCC
T ss_pred cCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCC----CCcEEEEcchhhC-------CC-CCC
Confidence 46779999999999887777766 56999999999999999999988765 3466666655432 12 568
Q ss_pred ccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------cCChhHHHHHHHHcCCe
Q 008457 455 FEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------QVDEPSMLSAATQCGFR 520 (564)
Q Consensus 455 fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r------------~~~~~~~~~~~~~~g~~ 520 (564)
||+|+++.++++.. ....+++.+.++| +|+| .+++..... ..+...+.+.+.+ |+
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L-~~gG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~ 166 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCT-KPGG--------YNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WE 166 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTE-EEEE--------EEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SE
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhc-CCCe--------EEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--Ce
Confidence 99999999988765 8899999999999 9987 655544321 1233455555543 88
Q ss_pred EEEEc
Q 008457 521 LVDKW 525 (564)
Q Consensus 521 ~~~~~ 525 (564)
+++..
T Consensus 167 ~~~~~ 171 (199)
T 2xvm_A 167 RVKYN 171 (199)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88775
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=122.01 Aligned_cols=105 Identities=15% Similarity=0.237 Sum_probs=79.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||||||+|.++..++..+ .+|+++|+|+.+++.+++|+..........++.+...++.... ..+ +.+++|
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~--~~~~~f 131 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD--KDV--PAGDGF 131 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH--HHS--CCTTCE
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc--ccc--ccCCCe
Confidence 67899999999998877777664 4999999999999999998765443211233455544443210 000 356799
Q ss_pred cEEEEe-ceeeCCCC-------hHHHHHHHHHHhhccCC
Q 008457 456 EVILGT-DVSYIPEA-------ILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~-d~~y~~~~-------~~~l~~~~~~ll~~~~g 486 (564)
|+|++. +++.+... ...+++.+.++| +|+|
T Consensus 132 D~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~L-kpgG 169 (293)
T 3thr_A 132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV-RPGG 169 (293)
T ss_dssp EEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTE-EEEE
T ss_pred EEEEEcChHHhhcCccccCHHHHHHHHHHHHHHc-CCCe
Confidence 999998 89988888 999999999999 9988
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-12 Score=121.70 Aligned_cols=103 Identities=10% Similarity=0.061 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHh----CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCC-CCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA----YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI-SPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~~fD 148 (564)
.++.+|||||||+|..+..|++. .++.+|+|+|+|+.+++.|+. ...+++++++|+..... .+. ...+||
T Consensus 80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~~~v~~~~gD~~~~~~-l~~~~~~~fD 154 (236)
T 2bm8_A 80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENITLHQGDCSDLTT-FEHLREMAHP 154 (236)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTEEEEECCSSCSGG-GGGGSSSCSS
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cCCceEEEECcchhHHH-HHhhccCCCC
Confidence 45689999999999999999987 678999999999999988872 23679999999875311 011 234799
Q ss_pred EEEEcccccCCChhHHHHHHHHHHh-ccCCCeEEEEEec
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKK-VLKPTGYVLFRDY 186 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r-~LkpgG~lii~~~ 186 (564)
+|++... |. +...++.++.+ +|||||++++.+.
T Consensus 155 ~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 155 LIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9998665 43 56779999997 9999999999654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.5e-12 Score=119.19 Aligned_cols=135 Identities=13% Similarity=0.030 Sum_probs=96.1
Q ss_pred CCCCeEEEeCCcccHHHHHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.++.+|||+|||+|.++..++. ....+|+++|+++.+++.+++|+..++.. ++.+...|..+... .....+
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~~~----~~~~~~ 140 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE----NTTFCHDRAETFGQ----RKDVRE 140 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS----SEEEEESCHHHHTT----CTTTTT
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CEEEEeccHHHhcc----cccccC
Confidence 3678999999999977766664 34569999999999999999999988762 46666554321100 000146
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-hhHHHHHHHHcCCeEEEEcCCCCC
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-EPSMLSAATQCGFRLVDKWPSKNS 530 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~g~~~~~~~~~~~~ 530 (564)
+||+|++.. ......+++.+.++| +|+| .+++........ ...+.+.+.+.||.+.++.....|
T Consensus 141 ~fD~V~~~~----~~~~~~~l~~~~~~L-kpgG--------~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 205 (240)
T 1xdz_A 141 SYDIVTARA----VARLSVLSELCLPLV-KKNG--------LFVALKAASAEEELNAGKKAITTLGGELENIHSFKLP 205 (240)
T ss_dssp CEEEEEEEC----CSCHHHHHHHHGGGE-EEEE--------EEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECT
T ss_pred CccEEEEec----cCCHHHHHHHHHHhc-CCCC--------EEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecC
Confidence 899999766 367899999999999 9988 776653332211 235667788899999887644333
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8e-12 Score=114.24 Aligned_cols=136 Identities=12% Similarity=0.146 Sum_probs=99.3
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+..++.......++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++|+..++.. .++.+...|+.+
T Consensus 21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~--- 93 (192)
T 1l3i_A 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLG---DNVTLMEGDAPE--- 93 (192)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC---TTEEEEESCHHH---
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCC---cceEEEecCHHH---
Confidence 34444443345578899999999998777777766 89999999999999999999988753 356666554422
Q ss_pred chhhhhhcC-CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEE
Q 008457 444 IEAIKEENN-EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV 522 (564)
Q Consensus 444 ~~~~~~~~~-~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~ 522 (564)
.++. ++||+|++..++ .....+++.+.++| +|+| .+++...... ....+.+.+.+.||.+.
T Consensus 94 -----~~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~l-~~gG--------~l~~~~~~~~-~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 94 -----ALCKIPDIDIAVVGGSG---GELQEILRIIKDKL-KPGG--------RIIVTAILLE-TKFEAMECLRDLGFDVN 155 (192)
T ss_dssp -----HHTTSCCEEEEEESCCT---TCHHHHHHHHHHTE-EEEE--------EEEEEECBHH-HHHHHHHHHHHTTCCCE
T ss_pred -----hcccCCCCCEEEECCch---HHHHHHHHHHHHhc-CCCc--------EEEEEecCcc-hHHHHHHHHHHCCCceE
Confidence 1222 489999987654 45799999999999 9987 7776654432 23467788888999665
Q ss_pred EE
Q 008457 523 DK 524 (564)
Q Consensus 523 ~~ 524 (564)
.+
T Consensus 156 ~~ 157 (192)
T 1l3i_A 156 IT 157 (192)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-12 Score=126.05 Aligned_cols=156 Identities=12% Similarity=0.025 Sum_probs=98.3
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCC---CCceeE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQIS---PSSIDI 149 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~---~~~fD~ 149 (564)
++.+|||+|||+|.++..++...++.+|+|+|+|+.|++.|+++....+ .+++++++|+... +..+++ +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL-LMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCS-STTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhh-hhhhhhcccCCcccE
Confidence 5779999999999999999887667899999999999999998865433 3589999997542 111233 368999
Q ss_pred EEEcccccCCCh-------------hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCcee
Q 008457 150 VTMVFVLSAVSP-------------EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRA 216 (564)
Q Consensus 150 V~~~~vl~~~~~-------------~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (564)
|+++-.+++... +....++.+++++|||||.+.+...... . ....... ....+. ...
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~----~-~~~~l~~-~g~~~~----~~~ 213 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIH----D-SLQLKKR-LRWYSC----MLG 213 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHH----H-HHHHGGG-BSCEEE----EES
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHH----H-HHhcccc-eEEEEE----CCC
Confidence 999866554320 1122467889999999998876532110 0 0000000 001110 001
Q ss_pred eccCHHHHHHHHHhCCCcEEEeeee
Q 008457 217 FYFSNDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 217 ~~~~~~~l~~~l~~aGf~~~~~~~~ 241 (564)
...+.+++.++++++||..+.....
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 1224578999999999988765443
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=124.55 Aligned_cols=140 Identities=16% Similarity=0.211 Sum_probs=105.9
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhc-----C-CCCCCCceEEEEeecCCCccch
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTAN-----L-KPPFLAKLITKRLEWGNRDHIE 445 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n-----~-~~~~~~~i~~~~l~w~~~~~~~ 445 (564)
..++.+|||||||+|.++..++.. ...+|+++|+++.+++.+++|+..+ + .. ..++.+...|+.+.....
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~--~~~v~~~~~d~~~l~~~~ 158 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS--RSNVRFLKGFIENLATAE 158 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTT--CCCEEEEESCTTCGGGCB
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccC--CCceEEEEccHHHhhhcc
Confidence 457889999999999887777765 3459999999999999999998765 2 21 246777777765421110
Q ss_pred hhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc---------------------
Q 008457 446 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------- 504 (564)
Q Consensus 446 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~--------------------- 504 (564)
. .++++++||+|+++.++++..+...+++.+.++| +|+| .++++.....
T Consensus 159 ~-~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (383)
T 4fsd_A 159 P-EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVL-RDGG--------ELYFSDVYADRRLSEAAQQDPILYGECLGGA 228 (383)
T ss_dssp S-CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE-EEEE--------EEEEEEEEESSCCCHHHHHCHHHHHTTCTTC
T ss_pred c-CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHc-CCCC--------EEEEEEeccccccCHhHhhhHHHhhcccccC
Confidence 0 0345679999999999999999999999999999 9988 7777654322
Q ss_pred CChhHHHHHHHHcCCeEEEEc
Q 008457 505 VDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 505 ~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.....+.+.+.++||.+.++.
T Consensus 229 ~~~~~~~~ll~~aGF~~v~~~ 249 (383)
T 4fsd_A 229 LYLEDFRRLVAEAGFRDVRLV 249 (383)
T ss_dssp CBHHHHHHHHHHTTCCCEEEE
T ss_pred CCHHHHHHHHHHCCCceEEEE
Confidence 223567888899999877654
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=114.68 Aligned_cols=125 Identities=12% Similarity=0.088 Sum_probs=96.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC-C
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN-E 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~-~ 453 (564)
++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.+++|+..|++. +++.+..-|+.+. +.+ .
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~---~~I~~~~gD~l~~--------~~~~~ 89 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT---SKIDVRLANGLSA--------FEEAD 89 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT---TTEEEEECSGGGG--------CCGGG
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhhc--------ccccc
Confidence 67899999999999988888876 458999999999999999999999985 5788877665432 122 3
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
+||+|+.+-+.- ..+..++......| +++| .++++.. ...+.+.+++.+.||.+.+-.
T Consensus 90 ~~D~IviaGmGg--~lI~~IL~~~~~~l-~~~~--------~lIlqp~---~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 90 NIDTITICGMGG--RLIADILNNDIDKL-QHVK--------TLVLQPN---NREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp CCCEEEEEEECH--HHHHHHHHHTGGGG-TTCC--------EEEEEES---SCHHHHHHHHHHTTEEEEEEE
T ss_pred ccCEEEEeCCch--HHHHHHHHHHHHHh-CcCC--------EEEEECC---CChHHHHHHHHHCCCEEEEEE
Confidence 799988654433 44666777777778 7665 7888763 346678899999999988754
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.4e-12 Score=122.89 Aligned_cols=143 Identities=19% Similarity=0.253 Sum_probs=101.5
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCC---------------------------
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKP--------------------------- 425 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~--------------------------- 425 (564)
.+++++|||||||+|.++..++.. .+.+|+++|+++.+++.+++|+..+...
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 457899999999999888877776 3579999999999999999987654421
Q ss_pred ---------------------------CCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeC------CCChHH
Q 008457 426 ---------------------------PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI------PEAILP 472 (564)
Q Consensus 426 ---------------------------~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~------~~~~~~ 472 (564)
....++.+...||.... ..+.+...++||+|++..++.+ ......
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~--~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~ 201 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDR--DDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKR 201 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSS--HHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCc--cccccccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence 00146888888886542 1222345679999999998733 337889
Q ss_pred HHHHHHHHhhccCCCCCCCCCcEEEEEEee-------c-------------cCChhHHHHHHHH--cCCeEEEEcCC
Q 008457 473 LFATAKELTASSNKSLREDQQPAFILCHIF-------R-------------QVDEPSMLSAATQ--CGFRLVDKWPS 527 (564)
Q Consensus 473 l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-------r-------------~~~~~~~~~~~~~--~g~~~~~~~~~ 527 (564)
+++.+.++| +|+| .+++.... + ......|.+.+.+ .||+..++...
T Consensus 202 ~l~~~~~~L-kpGG--------~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 202 MFRRIYRHL-RPGG--------ILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHHHHE-EEEE--------EEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHHHHh-CCCc--------EEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 999999999 9988 77775321 1 1123467778877 89999888755
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.9e-12 Score=127.44 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=87.5
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
+.....++.+|||||||+|.++..+++.+ ..+|+|+|+| .|++.|+++....+ .+++++++|+.... ++ ++
T Consensus 57 ~~~~~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~-~~ 129 (376)
T 3r0q_C 57 QNKHHFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS----LP-EK 129 (376)
T ss_dssp TTTTTTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC----CS-SC
T ss_pred hccccCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC----cC-Cc
Confidence 33444788999999999999999999883 3399999999 99999998765433 55999999996543 23 78
Q ss_pred eeEEEEcccccCCC-hhHHHHHHHHHHhccCCCeEEEEE
Q 008457 147 IDIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 147 fD~V~~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
||+|++..+.+++. ...+..+++++.++|||||.+++.
T Consensus 130 ~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 130 VDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp EEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred ceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 99999977666553 245788999999999999999874
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-11 Score=110.67 Aligned_cols=128 Identities=17% Similarity=0.161 Sum_probs=96.3
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++....+.+++++++|+.. + + ++||+|++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~--~----~-~~~D~v~~ 118 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE--F----N-SRVDIVIM 118 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG--C----C-CCCSEEEE
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH--c----C-CCCCEEEE
Confidence 3578899999999999999998873 3489999999999999999876554578999999864 2 2 48999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
+..+++........+++++.+++ ||.+++. ... . -+.+.+.+.+++.|
T Consensus 119 ~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~-~~~-~----------------------------~~~~~~~~~l~~~g 166 (207)
T 1wy7_A 119 NPPFGSQRKHADRPFLLKAFEIS--DVVYSIH-LAK-P----------------------------EVRRFIEKFSWEHG 166 (207)
T ss_dssp CCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE-ECC-H----------------------------HHHHHHHHHHHHTT
T ss_pred cCCCccccCCchHHHHHHHHHhc--CcEEEEE-eCC-c----------------------------CCHHHHHHHHHHCC
Confidence 98887775444567899999988 5544332 111 0 03455677889999
Q ss_pred CcEEEeee
Q 008457 233 FDVEELGL 240 (564)
Q Consensus 233 f~~~~~~~ 240 (564)
|++..+..
T Consensus 167 ~~~~~~~~ 174 (207)
T 1wy7_A 167 FVVTHRLT 174 (207)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEEE
Confidence 98765443
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.5e-12 Score=117.53 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccc--ccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDD--LSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~~fD 148 (564)
.++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|+++....+ .+++++++|+.... +......++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 5678999999999999999999876 7899999999999999998875433 46999999875321 11011127899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
+|++... ..+...+++++.++|||||++++.+...
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 9997543 2467789999999999999999876543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=117.80 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=89.2
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 141 (564)
+...+.+.+...++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|+++....+ .++.+..+|+. . +
T Consensus 79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~----~ 152 (235)
T 1jg1_A 79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-K----G 152 (235)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-G----C
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-c----C
Confidence 344455556667889999999999999999999865 799999999999999998865433 46889888872 2 2
Q ss_pred CCC-CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 142 ISP-SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 142 ~~~-~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
++. .+||+|++..++++++ .++.+.|+|||.+++.....
T Consensus 153 ~~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 153 FPPKAPYDVIIVTAGAPKIP--------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp CGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEECSS
T ss_pred CCCCCCccEEEECCcHHHHH--------HHHHHhcCCCcEEEEEEecC
Confidence 233 3599999999999985 26789999999999986543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=118.38 Aligned_cols=109 Identities=12% Similarity=0.107 Sum_probs=86.8
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
..++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|+++....+ .++++.++|+... ++.....++||+
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-l~~~~~~~~fD~ 139 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS-LESLGECPAFDL 139 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH-HHTCCSCCCCSE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-HHhcCCCCCeEE
Confidence 35789999999999999999999876 7899999999999999998875433 4799999998542 111112358999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
|++... ......+++++.++|||||++++.+..
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 140 IFIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred EEECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 998553 245677999999999999999986554
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7e-12 Score=117.97 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=86.3
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCC-CCCCce
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQ-ISPSSI 147 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~-~~~~~f 147 (564)
...++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|+++....+ .+++++++|+.......+ -..++|
T Consensus 55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 134 (223)
T 3duw_A 55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF 134 (223)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence 335789999999999999999999877 7899999999999999998865433 469999999854211000 012579
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
|+|++.... .....+++++.++|+|||.+++.+..
T Consensus 135 D~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 135 DFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp SEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred CEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 999986542 35678999999999999999886544
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=116.18 Aligned_cols=103 Identities=18% Similarity=0.110 Sum_probs=84.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhccccc------CCCeeEEEecCCcccccCCCCCC
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT------ETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~------~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
..++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|+++.... ..++.+.++|+... ....+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~ 150 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG----YAEEA 150 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC----CGGGC
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC----cccCC
Confidence 4678999999999999999999873 5579999999999999999876542 24789999988632 12356
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+||+|++...++++. +++.++|||||.+++....
T Consensus 151 ~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 151 PYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred CcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 899999999888773 5788999999999997654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-13 Score=129.29 Aligned_cols=101 Identities=17% Similarity=0.265 Sum_probs=85.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ .+++++++|+.... ++++||+|+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~ 149 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-----SFLKADVVF 149 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-----GGCCCSEEE
T ss_pred cCCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-----ccCCCCEEE
Confidence 47899999999999999999988 6899999999999999998876544 47999999986432 457899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
++..+++.. +....+.+++++|+|||.+++
T Consensus 150 ~~~~~~~~~--~~~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 150 LSPPWGGPD--YATAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp ECCCCSSGG--GGGSSSBCTTTSCSSCHHHHH
T ss_pred ECCCcCCcc--hhhhHHHHHHhhcCCcceeHH
Confidence 999999874 444577889999999999765
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.9e-12 Score=121.62 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=86.5
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-CCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
..+|||||||+|.++..+++.+|+.+|+++|+++.+++.|++++... ..+++++++|....- ..+++++||+|++..
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l--~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA--ESFTPASRDVIIRDV 167 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH--HTCCTTCEEEEEECC
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH--hhccCCCCCEEEECC
Confidence 35999999999999999999888999999999999999999987543 468999999985421 123567999999965
Q ss_pred cccCCChhH--HHHHHHHHHhccCCCeEEEEEec
Q 008457 155 VLSAVSPEK--MSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 155 vl~~~~~~~--~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
..+...... ...++++++++|+|||++++...
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 433222122 26799999999999999998643
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-11 Score=114.36 Aligned_cols=129 Identities=20% Similarity=0.265 Sum_probs=94.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++.. +.+|+++|+++.+++.++++ . .+.+...+..+. .........+|
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~---~-------~~~~~~~~~~~~---~~~~~~~~~~f 117 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA---G-------AGEVHLASYAQL---AEAKVPVGKDY 117 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT---C-------SSCEEECCHHHH---HTTCSCCCCCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh---c-------ccccchhhHHhh---cccccccCCCc
Confidence 5589999999999777777766 55899999999999999987 1 122333222111 00011234469
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee------------------------------ccC
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF------------------------------RQV 505 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~------------------------------r~~ 505 (564)
|+|+++.+++ ..+...+++.+.++| +|+| .++++... +..
T Consensus 118 D~v~~~~~l~-~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (227)
T 3e8s_A 118 DLICANFALL-HQDIIELLSAMRTLL-VPGG--------ALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFR 187 (227)
T ss_dssp EEEEEESCCC-SSCCHHHHHHHHHTE-EEEE--------EEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEEC
T ss_pred cEEEECchhh-hhhHHHHHHHHHHHh-CCCe--------EEEEEecCccccCccccccccchhhhhccccCcccceEEEe
Confidence 9999999999 889999999999999 9988 77776531 112
Q ss_pred ChhHHHHHHHHcCCeEEEEcCCC
Q 008457 506 DEPSMLSAATQCGFRLVDKWPSK 528 (564)
Q Consensus 506 ~~~~~~~~~~~~g~~~~~~~~~~ 528 (564)
+...+.+.+.++||+++++.+..
T Consensus 188 ~~~~~~~~l~~aGf~~~~~~~~~ 210 (227)
T 3e8s_A 188 TLASWLNALDMAGLRLVSLQEPQ 210 (227)
T ss_dssp CHHHHHHHHHHTTEEEEEEECCC
T ss_pred cHHHHHHHHHHcCCeEEEEecCC
Confidence 44678899999999999987543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-11 Score=113.83 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=76.0
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++.. ..+|+++|+++.+++.+++++..++. ++.+...|..+. +.+ ++|
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~-------~~~-~~f 102 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL-----KPRLACQDISNL-------NIN-RKF 102 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC-----CCEEECCCGGGC-------CCS-CCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC-----CeEEEecccccC-------Ccc-CCc
Confidence 6789999999999877777666 46899999999999999999877553 345554443321 122 689
Q ss_pred cEEEEec-eeeCC---CChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTD-VSYIP---EAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d-~~y~~---~~~~~l~~~~~~ll~~~~g 486 (564)
|+|+++. ++.+. .....+++.+.++| +|+|
T Consensus 103 D~v~~~~~~l~~~~~~~~~~~~l~~~~~~L-~pgG 136 (246)
T 1y8c_A 103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHL-KEGG 136 (246)
T ss_dssp EEEEECTTGGGGCCSHHHHHHHHHHHHTTE-EEEE
T ss_pred eEEEEcCccccccCCHHHHHHHHHHHHHhc-CCCc
Confidence 9999996 88876 67889999999999 9988
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=117.14 Aligned_cols=111 Identities=15% Similarity=0.239 Sum_probs=84.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc---------CCCeeEEEecCCcccccCCCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---------ETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~---------~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
.++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.|+++.... ..++.++++|+... +...++.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~-l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF-LPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC-GGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH-HHHhccc
Confidence 3678999999999999999999988889999999999999998765422 25799999998642 2223567
Q ss_pred CceeEEEEcccccCCChh------HHHHHHHHHHhccCCCeEEEEEe
Q 008457 145 SSIDIVTMVFVLSAVSPE------KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~------~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+++|.|++...-.+.... ....++.++.++|+|||.|++.+
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 899999875422211000 01479999999999999999864
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-11 Score=117.88 Aligned_cols=125 Identities=11% Similarity=0.130 Sum_probs=95.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++..++.+|+++|+|+.+++.+++|+..|+.. +++.+...|..+. ...++|
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~---~~v~~~~~D~~~~--------~~~~~f 193 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE---DRMSAYNMDNRDF--------PGENIA 193 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT---TTEEEECSCTTTC--------CCCSCE
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCC---ceEEEEECCHHHh--------cccCCc
Confidence 58899999999999988888877668999999999999999999999874 4576666555432 125689
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----cCChhHHHHHHHHcCCeEEEE
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----QVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-----~~~~~~~~~~~~~~g~~~~~~ 524 (564)
|+|++. .. .....+++.+.++| +|+| .+++..... ......+.+.+.+.|+.+..+
T Consensus 194 D~Vi~~-~p---~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 194 DRILMG-YV---VRTHEFIPKALSIA-KDGA--------IIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp EEEEEC-CC---SSGGGGHHHHHHHE-EEEE--------EEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEC-Cc---hhHHHHHHHHHHHC-CCCe--------EEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence 999863 33 34467899999999 9987 666655543 122346677888899998873
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.8e-11 Score=116.08 Aligned_cols=110 Identities=9% Similarity=0.010 Sum_probs=88.1
Q ss_pred CCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh
Q 008457 371 NPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK 448 (564)
Q Consensus 371 ~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~ 448 (564)
.....++.+|||+|||+|.++..++... +.+|+++|+++.+++.+++++..++. ++.+...|..+.
T Consensus 17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~v~~~~~d~~~~------- 84 (284)
T 3gu3_A 17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-----DSEFLEGDATEI------- 84 (284)
T ss_dssp TSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-----EEEEEESCTTTC-------
T ss_pred HhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-----ceEEEEcchhhc-------
Confidence 3355678899999999997777777653 46999999999999999999876542 566666665532
Q ss_pred hhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 449 EENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 449 ~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
+. +++||+|++..++.+..+...+++.+.++| +|+| .+++....
T Consensus 85 ~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~ 128 (284)
T 3gu3_A 85 EL-NDKYDIAICHAFLLHMTTPETMLQKMIHSV-KKGG--------KIICFEPH 128 (284)
T ss_dssp CC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTE-EEEE--------EEEEEECC
T ss_pred Cc-CCCeeEEEECChhhcCCCHHHHHHHHHHHc-CCCC--------EEEEEecc
Confidence 12 358999999999999999999999999999 9988 77766543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.5e-12 Score=119.59 Aligned_cols=116 Identities=13% Similarity=0.169 Sum_probs=90.8
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+...+...++.+|||+|||+|..+..+++..|+.+|+++|+++.+++.|+++....+ .++.+.++|+...... ...
T Consensus 45 ~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 123 (233)
T 2gpy_A 45 SLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK-LEL 123 (233)
T ss_dssp HHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH-HTT
T ss_pred HHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh-ccc
Confidence 3334444457889999999999999999999888899999999999999998865433 4689999888642110 001
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+++||+|++....+ +...+++++.++|+|||.+++.+..
T Consensus 124 ~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 124 YPLFDVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp SCCEEEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred CCCccEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 57899999977643 5678999999999999999997543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=121.94 Aligned_cols=132 Identities=13% Similarity=0.116 Sum_probs=102.5
Q ss_pred CCCCeEEEeCCcccHHHHHHH-h-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVA-A-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~-~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||+|||+|.++..++ . ....+|+++|+++.+++.+++|+..++.. +++.+...|+.+. +..
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-------~~~- 185 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA---GQITLHRQDAWKL-------DTR- 185 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG---GGEEEEECCGGGC-------CCC-
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECchhcC-------Ccc-
Confidence 477899999999997766664 2 34569999999999999999999887763 4577777766532 223
Q ss_pred CCccEEEEeceeeCCCChHH---HHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------------
Q 008457 453 EGFEVILGTDVSYIPEAILP---LFATAKELTASSNKSLREDQQPAFILCHIFR-------------------------- 503 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~---l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-------------------------- 503 (564)
++||+|+++.++++..+... +++.+.++| +|+| .++++...+
T Consensus 186 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 256 (305)
T 3ocj_A 186 EGYDLLTSNGLNIYEPDDARVTELYRRFWQAL-KPGG--------ALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLV 256 (305)
T ss_dssp SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHE-EEEE--------EEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHH
T ss_pred CCeEEEEECChhhhcCCHHHHHHHHHHHHHhc-CCCe--------EEEEEecCCCCcccccccceeeccccchhhhhhhH
Confidence 79999999998887766665 799999999 9988 777766321
Q ss_pred -----------cCChhHHHHHHHHcCCeEEEEcC
Q 008457 504 -----------QVDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 504 -----------~~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
..+...+.+.++++||+++++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 257 FTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp HHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEc
Confidence 02345778889999999999874
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=114.48 Aligned_cols=124 Identities=7% Similarity=0.061 Sum_probs=94.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC-
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE- 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~- 453 (564)
++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.+++|+..|++. +++.+..-|+.+. +.++
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~---~~I~v~~gD~l~~--------~~~~~ 89 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT---EQIDVRKGNGLAV--------IEKKD 89 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT---TTEEEEECSGGGG--------CCGGG
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---ceEEEEecchhhc--------cCccc
Confidence 67799999999999988888876 458999999999999999999999984 5688876665322 1222
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEE
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
+||+|+.+-+.- ..+..++......| ++.+ .++++.. ...+.+.+++.+.||.+.+-
T Consensus 90 ~~D~IviagmGg--~lI~~IL~~~~~~L-~~~~--------~lIlq~~---~~~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 90 AIDTIVIAGMGG--TLIRTILEEGAAKL-AGVT--------KLILQPN---IAAWQLREWSEQNNWLITSE 146 (244)
T ss_dssp CCCEEEEEEECH--HHHHHHHHHTGGGG-TTCC--------EEEEEES---SCHHHHHHHHHHHTEEEEEE
T ss_pred cccEEEEeCCch--HHHHHHHHHHHHHh-CCCC--------EEEEEcC---CChHHHHHHHHHCCCEEEEE
Confidence 699988654332 44666777777788 7655 7877753 34667889999999998543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-12 Score=139.35 Aligned_cols=111 Identities=13% Similarity=0.146 Sum_probs=87.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..+.+|||||||+|.++..|++. |.+|+|||+|+.+++.|+.+....+ .+++|.++++.+. ...+.+++||+|+|
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~v~~ 140 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEV--IAALEEGEFDLAIG 140 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHH--HHHCCTTSCSEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHH--hhhccCCCccEEEE
Confidence 35689999999999999999998 8899999999999999999876554 5799999988543 22346789999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
..+++|++..+....+..+.+.|+++|..++.....
T Consensus 141 ~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 141 LSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp ESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred CcchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 999999963332344556777788888777655443
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=120.79 Aligned_cols=110 Identities=16% Similarity=0.083 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-C--CeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-T--RVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~--~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++....+ . +++++++|+...........++||+|
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 46789999999999999999987 5599999999999999998865433 2 48999999854211000014689999
Q ss_pred EEccc----------ccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 151 TMVFV----------LSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 151 ~~~~v----------l~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++.-- +++ .++...+++++.++|+|||.+++....
T Consensus 230 i~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp EECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 99432 112 246788999999999999998876433
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.26 E-value=9.3e-11 Score=108.20 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=71.9
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++.. +++++++|+.. + + ++||+|++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~--~----~-~~~D~v~~ 116 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSE--I----S-GKYDTWIM 116 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGG--C----C-CCEEEEEE
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC----CCEEEECcHHH--C----C-CCeeEEEE
Confidence 357889999999999999999887 33479999999999999998865 68999999864 2 2 68999999
Q ss_pred cccccCCChhHHHHHHHHHHhcc
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVL 175 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~L 175 (564)
+..++|++......+++++.+.+
T Consensus 117 ~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 117 NPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp CCCC-------CHHHHHHHHHHE
T ss_pred CCCchhccCchhHHHHHHHHHhc
Confidence 99999986433457899999998
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=113.47 Aligned_cols=152 Identities=14% Similarity=0.091 Sum_probs=103.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||+|||+|.++..++.. ...+|+++|+++.+++.+++|+..++.. .++.+...|..+ +....+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~------~~~~~~ 91 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI---DRVTLIKDGHQN------MDKYID 91 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG---GGEEEECSCGGG------GGGTCC
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCeEEEECCHHH------Hhhhcc
Confidence 36789999999999888777776 3469999999999999999999988763 456666555422 112345
Q ss_pred CCccEEEEeceeeCC---------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC----hh---HHHHHHHH
Q 008457 453 EGFEVILGTDVSYIP---------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD----EP---SMLSAATQ 516 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~---------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~----~~---~~~~~~~~ 516 (564)
++||+|++...++.. .....+++.+.++| +|+| .++++....... .. .++..+..
T Consensus 92 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-k~gG--------~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (197)
T 3eey_A 92 CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL-VTGG--------IITVVIYYGGDTGFEEKEKVLEFLKGVDQ 162 (197)
T ss_dssp SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHE-EEEE--------EEEEEECCBTTTBSHHHHHHHHHHTTSCT
T ss_pred CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhC-cCCC--------EEEEEEccCCCCcHHHHHHHHHHHHhCCC
Confidence 789999966433221 13457999999999 9987 777665332211 11 23333345
Q ss_pred cCCeEEEEcCCCCCCCCccccccccccC
Q 008457 517 CGFRLVDKWPSKNSASPSESIISSWFSE 544 (564)
Q Consensus 517 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (564)
.+|.+....-...+..+++-++..+.++
T Consensus 163 ~~~~v~~~~~~~~~~~pp~~~~~~~~~~ 190 (197)
T 3eey_A 163 KKFIVQRTDFINQANCPPILVCIEKISE 190 (197)
T ss_dssp TTEEEEEEEETTCCSCCCEEEEEEECCS
T ss_pred CcEEEEEEEeccCccCCCeEEEEEEccc
Confidence 6788888765666666666666655543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=116.85 Aligned_cols=107 Identities=10% Similarity=0.096 Sum_probs=85.1
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhC-----CCcEEEEEeCChHHHHHHHhccccc------CCCeeEEEecCCcccccCC
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAY-----PDVFVYACDFSPRAVNLVMTHKDFT------ETRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~-----~~~~v~~iD~s~~~l~~a~~~~~~~------~~~i~~~~~d~~~~~~~~~ 141 (564)
..++.+|||||||+|.++..+++.. |..+|+++|+++.+++.|+++.... ..++.+..+|+........
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4678999999999999999999885 4569999999999999999886543 2579999999864210000
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
...++||+|++...++++ ++++.++|||||++++....
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence 235689999999998876 36788999999999997653
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-11 Score=116.67 Aligned_cols=103 Identities=11% Similarity=0.062 Sum_probs=77.5
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
.+.+.+.... .++.+|||||||+|.++..++.. ..+|+++|+++.+++.++++.. ++.+...|..+.
T Consensus 39 ~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~---------~~~~~~~d~~~~- 105 (263)
T 3pfg_A 39 DLAALVRRHS--PKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP---------DAVLHHGDMRDF- 105 (263)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTTC-
T ss_pred HHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC---------CCEEEECChHHC-
Confidence 3445554432 25689999999999777777665 4589999999999999998742 355665555432
Q ss_pred cchhhhhhcCCCccEEEEec-eeeCC---CChHHHHHHHHHHhhccCC
Q 008457 443 HIEAIKEENNEGFEVILGTD-VSYIP---EAILPLFATAKELTASSNK 486 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d-~~y~~---~~~~~l~~~~~~ll~~~~g 486 (564)
+. +++||+|++.. ++.+. +....+++.+.++| +|+|
T Consensus 106 ------~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L-~pgG 145 (263)
T 3pfg_A 106 ------SL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHV-LPDG 145 (263)
T ss_dssp ------CC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTE-EEEE
T ss_pred ------Cc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhc-CCCc
Confidence 11 56899999986 87775 46778899999999 9988
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-11 Score=111.76 Aligned_cols=127 Identities=17% Similarity=0.096 Sum_probs=93.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++ +|||+|||+|.++..++.. +.+|+++|+++.+++.++++...++. ++.+...|..+. ++++++|
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~-------~~~~~~f 95 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV-----KITTVQSNLADF-------DIVADAW 95 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC-----CEEEECCBTTTB-------SCCTTTC
T ss_pred CC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC-----ceEEEEcChhhc-------CCCcCCc
Confidence 45 9999999999777777665 45999999999999999999887653 356655555432 2345789
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------cCChhHHHHHHHHcCCe
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------------QVDEPSMLSAATQCGFR 520 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r---------------~~~~~~~~~~~~~~g~~ 520 (564)
|+|+++.+.+.......+++.+.++| +|+| .+++..... ..+...+.+.+. ||+
T Consensus 96 D~v~~~~~~~~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~ 164 (202)
T 2kw5_A 96 EGIVSIFCHLPSSLRQQLYPKVYQGL-KPGG--------VFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLN 164 (202)
T ss_dssp SEEEEECCCCCHHHHHHHHHHHHTTC-CSSE--------EEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSC
T ss_pred cEEEEEhhcCCHHHHHHHHHHHHHhc-CCCc--------EEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--Cce
Confidence 99998765554567889999999999 9988 777765431 123345555555 999
Q ss_pred EEEEcCC
Q 008457 521 LVDKWPS 527 (564)
Q Consensus 521 ~~~~~~~ 527 (564)
++++...
T Consensus 165 v~~~~~~ 171 (202)
T 2kw5_A 165 WLIANNL 171 (202)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9988544
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.5e-11 Score=112.28 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=73.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++.. .+|+++|+++.+++.+++++..++. ++.+...|..+. +. +++|
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~-------~~-~~~f 97 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNR-----HVDFWVQDMREL-------EL-PEPV 97 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTC-----CCEEEECCGGGC-------CC-SSCE
T ss_pred CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCC-----ceEEEEcChhhc-------CC-CCCc
Confidence 5689999999999777766655 7999999999999999999887652 355555544322 11 2689
Q ss_pred cEEEEe-ceeeCC---CChHHHHHHHHHHhhccCC
Q 008457 456 EVILGT-DVSYIP---EAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~-d~~y~~---~~~~~l~~~~~~ll~~~~g 486 (564)
|+|++. +++.+. .....+++.+.++| +|+|
T Consensus 98 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG 131 (243)
T 3d2l_A 98 DAITILCDSLNYLQTEADVKQTFDSAARLL-TDGG 131 (243)
T ss_dssp EEEEECTTGGGGCCSHHHHHHHHHHHHHHE-EEEE
T ss_pred CEEEEeCCchhhcCCHHHHHHHHHHHHHhc-CCCe
Confidence 999986 477665 56778899999999 9987
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.1e-11 Score=111.40 Aligned_cols=126 Identities=11% Similarity=0.066 Sum_probs=95.7
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++.+|||+|||+|.++..++.. +.+|+++|+++.+++.+++ ++. .++.+...|..+. ..++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~----~~~~~~~~d~~~~--------~~~~ 106 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR----HGL----DNVEFRQQDLFDW--------TPDR 106 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG----GCC----TTEEEEECCTTSC--------CCSS
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh----cCC----CCeEEEecccccC--------CCCC
Confidence 446779999999999888777776 5699999999999999887 232 3567766665432 2457
Q ss_pred CccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----------------------------
Q 008457 454 GFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------------------------- 503 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r---------------------------- 503 (564)
+||+|+++.++++... ...+++.+.++| +|+| .++++...+
T Consensus 107 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (218)
T 3ou2_A 107 QWDAVFFAHWLAHVPDDRFEAFWESVRSAV-APGG--------VVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFR 177 (218)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEECCCC------------CEEEEECTTSCEEE
T ss_pred ceeEEEEechhhcCCHHHHHHHHHHHHHHc-CCCe--------EEEEEeCCCCccccchhhhcccccceeeecCCcchhh
Confidence 9999999999988776 489999999999 9988 666664321
Q ss_pred ----cCChhHHHHHHHHcCCeEEEEc
Q 008457 504 ----QVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 504 ----~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
..+...+.+.++++||+++...
T Consensus 178 ~~~~~~~~~~~~~~l~~aGf~v~~~~ 203 (218)
T 3ou2_A 178 IVKVFRSPAELTERLTALGWSCSVDE 203 (218)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HhhcCCCHHHHHHHHHHCCCEEEeee
Confidence 1244567888889999966543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=121.29 Aligned_cols=112 Identities=17% Similarity=0.101 Sum_probs=84.8
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhccccc------------CCCeeEEEecC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT------------ETRVSTFVCDL 133 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~------------~~~i~~~~~d~ 133 (564)
+...+...++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|+++.... ..++++..+|+
T Consensus 97 ~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~ 176 (336)
T 2b25_A 97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI 176 (336)
T ss_dssp HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh
Confidence 344455678999999999999999999987 56689999999999999999876531 25799999998
Q ss_pred CcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 134 ISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 134 ~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.... .++++++||+|++...- +..++.++.++|+|||.+++....
T Consensus 177 ~~~~--~~~~~~~fD~V~~~~~~-------~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 177 SGAT--EDIKSLTFDAVALDMLN-------PHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp TCCC---------EEEEEECSSS-------TTTTHHHHGGGEEEEEEEEEEESS
T ss_pred HHcc--cccCCCCeeEEEECCCC-------HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 6531 13456789999995432 223789999999999999987654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=119.49 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=96.1
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||+|||+|.++..++. ...+|+++|+++.+++.++++. .++.+...|..+. +. +++
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-------~~-~~~ 117 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY---------PHLHFDVADARNF-------RV-DKP 117 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC---------TTSCEEECCTTTC-------CC-SSC
T ss_pred CCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC---------CCCEEEECChhhC-------Cc-CCC
Confidence 4678999999999977777766 5569999999999999998874 1244455544332 12 468
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC-----------------------------
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV----------------------------- 505 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~----------------------------- 505 (564)
||+|+++.++++..+...+++.+.++| +|+| .+++.......
T Consensus 118 fD~v~~~~~l~~~~d~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (279)
T 3ccf_A 118 LDAVFSNAMLHWVKEPEAAIASIHQAL-KSGG--------RFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFP 188 (279)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHE-EEEE--------EEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCC
T ss_pred cCEEEEcchhhhCcCHHHHHHHHHHhc-CCCc--------EEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCC
Confidence 999999999999899999999999999 9988 77776553211
Q ss_pred ChhHHHHHHHHcCCeEEEEcCC
Q 008457 506 DEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 506 ~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
+...+.+.+.++||+++++...
T Consensus 189 ~~~~~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 189 SIGEYVNILEKQGFDVTYAALF 210 (279)
T ss_dssp CHHHHHHHHHHHTEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEEe
Confidence 2345677788899999877533
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=118.05 Aligned_cols=140 Identities=10% Similarity=0.046 Sum_probs=99.6
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+++.+.......++.+|||+|||+|.++..++. ...+|+++|+|+.+++.++++. ++.+...|+.+.
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~d~~~~-- 88 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP----------QVEWFTGYAENL-- 88 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT----------TEEEECCCTTSC--
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc----------CCEEEECchhhC--
Confidence 445554443445788999999999977777766 4569999999998888765542 456665555432
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------------- 503 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-------------------- 503 (564)
++++++||+|++..++++..+...+++.+.++| + +| .+++.....
T Consensus 89 -----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-k-gG--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (261)
T 3ege_A 89 -----ALPDKSVDGVISILAIHHFSHLEKSFQEMQRII-R-DG--------TIVLLTFDIRLAQRIWLYDYFPFLWEDAL 153 (261)
T ss_dssp -----CSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHB-C-SS--------CEEEEEECGGGCCCCGGGGTCHHHHHHHH
T ss_pred -----CCCCCCEeEEEEcchHhhccCHHHHHHHHHHHh-C-Cc--------EEEEEEcCCchhHHHHHHHHHHHHhhhhh
Confidence 235679999999999999999999999999999 8 77 444443331
Q ss_pred -cCCh-hHHHHHHHHcCCeEEEEcCCCCCCC
Q 008457 504 -QVDE-PSMLSAATQCGFRLVDKWPSKNSAS 532 (564)
Q Consensus 504 -~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~ 532 (564)
.... ..+. .++++||..+++.....|.+
T Consensus 154 ~~~~~~~~~~-~l~~aGF~~v~~~~~~~p~~ 183 (261)
T 3ege_A 154 RFLPLDEQIN-LLQENTKRRVEAIPFLLPHD 183 (261)
T ss_dssp TSCCHHHHHH-HHHHHHCSEEEEEECCEETT
T ss_pred hhCCCHHHHH-HHHHcCCCceeEEEecCCCc
Confidence 1111 2344 88899999888865544433
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=119.72 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=89.5
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhccccc----CCCeeEEEecCCcccccC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~----~~~i~~~~~d~~~~~~~~ 140 (564)
.+...+...++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|+++.... ..++.+.++|+...
T Consensus 90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~---- 165 (280)
T 1i9g_A 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS---- 165 (280)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC----
T ss_pred HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc----
Confidence 3344455578899999999999999999985 56789999999999999999886543 35789999998653
Q ss_pred CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++++++||+|++. ++ ++..+++++.++|+|||.+++..+.
T Consensus 166 ~~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 166 ELPDGSVDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCCTTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCCceeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 3457789999983 32 3457899999999999999997654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.25 E-value=6.9e-12 Score=114.35 Aligned_cols=128 Identities=15% Similarity=0.258 Sum_probs=91.8
Q ss_pred HHHHHHHHhcCC-CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 361 AHLMAAVLARNP-TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 361 ~~~l~~~l~~~~-~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
...+.+.+.... ...++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+..++.. .++.+...|+.
T Consensus 28 ~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~ 104 (187)
T 2fhp_A 28 TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP---EKFEVRKMDAN 104 (187)
T ss_dssp CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHH
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC---cceEEEECcHH
Confidence 334444443321 23478899999999998888777766679999999999999999999988753 45677665553
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHH--HHHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATA--KELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~--~~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
+. ...+ +...++||+|++..+ |.....+..++.+ .++| +|+| .++++.....
T Consensus 105 ~~--~~~~-~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L-~~gG--------~l~~~~~~~~ 158 (187)
T 2fhp_A 105 RA--LEQF-YEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLL-TNEA--------VIVCETDKTV 158 (187)
T ss_dssp HH--HHHH-HHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCE-EEEE--------EEEEEEETTC
T ss_pred HH--HHHH-HhcCCCCCEEEECCC-CCchhHHHHHHHHHHhccc-CCCC--------EEEEEeCCcc
Confidence 21 1000 112578999996555 7777888889888 7789 9988 7877766554
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=114.93 Aligned_cols=105 Identities=9% Similarity=0.048 Sum_probs=82.7
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|+++....+ .+++++++|+... + +...++||+|++.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~-~--~~~~~~fD~V~~~ 129 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF-L--AQKGTPHNIVFVD 129 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH-H--SSCCCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH-H--hhcCCCCCEEEEC
Confidence 57899999999999999887773 3489999999999999998875444 4789999987542 1 2356789999998
Q ss_pred ccccCCChhHHHHHHHHHHh--ccCCCeEEEEEec
Q 008457 154 FVLSAVSPEKMSLVLQNIKK--VLKPTGYVLFRDY 186 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r--~LkpgG~lii~~~ 186 (564)
..++ . .....+++.+.+ +|+|||.+++...
T Consensus 130 ~p~~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 130 PPFR-R--GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp CSSS-T--TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCC-C--CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 7744 2 356677888865 5999999998754
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=115.90 Aligned_cols=110 Identities=11% Similarity=0.071 Sum_probs=87.1
Q ss_pred HHHhhhc--cCCCCCeEEEEcCCccccHHHHHHhCC------CcEEEEEeCChHHHHHHHhccccc------CCCeeEEE
Q 008457 65 KEWGRYF--SGAGRKDVLEVGCGAGNTIFPLIAAYP------DVFVYACDFSPRAVNLVMTHKDFT------ETRVSTFV 130 (564)
Q Consensus 65 ~~~~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~~~------~~~v~~iD~s~~~l~~a~~~~~~~------~~~i~~~~ 130 (564)
..+.+.+ ...++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|+++.... ..++.+..
T Consensus 72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 151 (227)
T 1r18_A 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 151 (227)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 3344444 246789999999999999999988642 258999999999999999876533 35789999
Q ss_pred ecCCcccccCCCCC-CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 131 CDLISDDLSRQISP-SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 131 ~d~~~~~~~~~~~~-~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+|... +++. ++||+|++..++++++ +++.+.|||||++++....
T Consensus 152 ~d~~~-----~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 152 GDGRK-----GYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp SCGGG-----CCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred CCccc-----CCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence 99864 2233 7899999999999884 5789999999999997654
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-11 Score=114.90 Aligned_cols=109 Identities=12% Similarity=0.148 Sum_probs=85.3
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccch
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE 445 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~ 445 (564)
.+.......++.+|||||||+|.++..++... ..+|+++|+++.+++.++++. .++.+...|..+.
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~---- 90 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---------PNTNFGKADLATW---- 90 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---------TTSEEEECCTTTC----
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------CCcEEEECChhhc----
Confidence 34444445578899999999998877777653 568999999999999999871 3456666655432
Q ss_pred hhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 446 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 446 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
+ ++++||+|+++.++++..+...+++.+.++| +|+| .++++..
T Consensus 91 ---~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~ 133 (259)
T 2p35_A 91 ---K-PAQKADLLYANAVFQWVPDHLAVLSQLMDQL-ESGG--------VLAVQMP 133 (259)
T ss_dssp ---C-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGE-EEEE--------EEEEEEE
T ss_pred ---C-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhc-CCCe--------EEEEEeC
Confidence 1 3568999999999999999999999999999 9988 7777653
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=113.94 Aligned_cols=112 Identities=12% Similarity=0.039 Sum_probs=83.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC-
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG- 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~- 454 (564)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++|+..++... .++.+...|..+ .+..+.+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~v~~~~~d~~~-----~~~~~~~~~~ 125 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSS--EQAEVINQSSLD-----FLKQPQNQPH 125 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCT--TTEEEECSCHHH-----HTTSCCSSCC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCc--cceEEEECCHHH-----HHHhhccCCC
Confidence 678999999999988887777777799999999999999999999887520 245555433211 111122467
Q ss_pred ccEEEEeceeeCCCChHHHHHHH--HHHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 455 FEVILGTDVSYIPEAILPLFATA--KELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~--~~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
||+|++..+ |.....+.+++.+ .++| +|+| .++++...+.
T Consensus 126 fD~I~~~~~-~~~~~~~~~l~~~~~~~~L-kpgG--------~l~i~~~~~~ 167 (201)
T 2ift_A 126 FDVVFLDPP-FHFNLAEQAISLLCENNWL-KPNA--------LIYVETEKDK 167 (201)
T ss_dssp EEEEEECCC-SSSCHHHHHHHHHHHTTCE-EEEE--------EEEEEEESSS
T ss_pred CCEEEECCC-CCCccHHHHHHHHHhcCcc-CCCc--------EEEEEECCCC
Confidence 999997655 7777788888888 5579 9988 8888776665
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-11 Score=109.99 Aligned_cols=105 Identities=11% Similarity=0.120 Sum_probs=81.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+..+|||||||+|.++..++... ..+|+++|+|+.|++.+++|+..++.. .++.+. | ... ..++++
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~---~~v~~~--d-----~~~---~~~~~~ 115 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTT---IKYRFL--N-----KES---DVYKGT 115 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCS---SEEEEE--C-----CHH---HHTTSE
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---ccEEEe--c-----ccc---cCCCCC
Confidence 56799999999998877776652 349999999999999999999998874 345552 1 111 245678
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
||+|++.+++..-...+..+..+.+.| +|+| ++++++.|
T Consensus 116 ~DvVLa~k~LHlL~~~~~al~~v~~~L-~pgg---------vfISfptk 154 (200)
T 3fzg_A 116 YDVVFLLKMLPVLKQQDVNILDFLQLF-HTQN---------FVISFPIK 154 (200)
T ss_dssp EEEEEEETCHHHHHHTTCCHHHHHHTC-EEEE---------EEEEEECC
T ss_pred cChhhHhhHHHhhhhhHHHHHHHHHHh-CCCC---------EEEEeChH
Confidence 999999999887766666677899999 8875 77777754
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.6e-12 Score=113.54 Aligned_cols=112 Identities=15% Similarity=0.205 Sum_probs=83.9
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+..+++. .++.+...|+.+ ..+...+
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~------~~~~~~~ 99 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE---NRFTLLKMEAER------AIDCLTG 99 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG---GGEEEECSCHHH------HHHHBCS
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC---CceEEEECcHHH------hHHhhcC
Confidence 4578899999999998888777776679999999999999999999988763 356665444321 1122345
Q ss_pred CccEEEEeceeeCCCChHHHHHHHH--HHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAK--ELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~--~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
+||+|++.. .|.....+.+++.+. ++| +|+| .+++....+.
T Consensus 100 ~fD~i~~~~-~~~~~~~~~~~~~l~~~~~L-~~gG--------~l~~~~~~~~ 142 (177)
T 2esr_A 100 RFDLVFLDP-PYAKETIVATIEALAAKNLL-SEQV--------MVVCETDKTV 142 (177)
T ss_dssp CEEEEEECC-SSHHHHHHHHHHHHHHTTCE-EEEE--------EEEEEEETTC
T ss_pred CCCEEEECC-CCCcchHHHHHHHHHhCCCc-CCCc--------EEEEEECCcc
Confidence 799998654 455556777888887 889 9988 8887766554
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=118.77 Aligned_cols=143 Identities=15% Similarity=0.190 Sum_probs=102.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
+.+..+.+++..... .++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.+++|+..++. .++.+...|
T Consensus 93 ~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~----~~v~~~~~d 167 (276)
T 2b3t_A 93 PDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI----KNIHILQSD 167 (276)
T ss_dssp TTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC----CSEEEECCS
T ss_pred chHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEEcc
Confidence 445566666665432 46779999999999888877754 356999999999999999999998876 357777666
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCC-------------------------CChHHHHHHHHHHhhccCCCCCCCC
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIP-------------------------EAILPLFATAKELTASSNKSLREDQ 492 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-------------------------~~~~~l~~~~~~ll~~~~g~~~~~~ 492 (564)
+.+. ++.++||+|+++.+.... .....+++.+.++| +|+|
T Consensus 168 ~~~~--------~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~L-kpgG------ 232 (276)
T 2b3t_A 168 WFSA--------LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL-VSGG------ 232 (276)
T ss_dssp TTGG--------GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGE-EEEE------
T ss_pred hhhh--------cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhc-CCCC------
Confidence 6432 235689999976432221 23477888999999 9988
Q ss_pred CcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 493 QPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 493 ~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+++.... .....+.+.+.+.||...++.
T Consensus 233 --~l~~~~~~--~~~~~~~~~l~~~Gf~~v~~~ 261 (276)
T 2b3t_A 233 --FLLLEHGW--QQGEAVRQAFILAGYHDVETC 261 (276)
T ss_dssp --EEEEECCS--SCHHHHHHHHHHTTCTTCCEE
T ss_pred --EEEEEECc--hHHHHHHHHHHHCCCcEEEEE
Confidence 77765433 233467777888999865554
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=122.29 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=83.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++....+ .+++++.+|+... +++.++||+|+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~Iv 110 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV----HLPFPKVDIII 110 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS----CCSSSCEEEEE
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc----cCCCCcccEEE
Confidence 56789999999999999998887 24589999999 59999988765433 5699999998654 34568999999
Q ss_pred EcccccCC-ChhHHHHHHHHHHhccCCCeEEEE
Q 008457 152 MVFVLSAV-SPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 152 ~~~vl~~~-~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+..+.+++ ....+..++.++.++|||||.++.
T Consensus 111 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 98654443 234677899999999999999974
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-10 Score=114.40 Aligned_cols=170 Identities=15% Similarity=0.084 Sum_probs=107.6
Q ss_pred EEEEEeCCceEEEEEecccccccCCCccceechhH--HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEE
Q 008457 327 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESA--HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVA 404 (564)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~--~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~ 404 (564)
...+..+|..+.+..... ..+|+..-... ..+++++.. ..++.+|||||||+|.++..++..++ +|++
T Consensus 111 ~~~i~e~g~~f~v~~~~~------~~tg~f~dq~~~~~~l~~~~~~---~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~ 180 (332)
T 2igt_A 111 TWPLSLLGVEFLGRFTAF------RHVGVFPEQIVHWEWLKNAVET---ADRPLKVLNLFGYTGVASLVAAAAGA-EVTH 180 (332)
T ss_dssp EEEEEETTEEEEEECCSS------SCCSCCGGGHHHHHHHHHHHHH---SSSCCEEEEETCTTCHHHHHHHHTTC-EEEE
T ss_pred ceEEEECCEEEEEecCcc------ccceechHHHHHHHHHHHHHHh---cCCCCcEEEcccccCHHHHHHHHcCC-EEEE
Confidence 455666777777653222 23443321111 124444432 12567999999999988888877665 9999
Q ss_pred EcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh--cCCCccEEEEeceeeCC----------CChHH
Q 008457 405 TDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNEGFEVILGTDVSYIP----------EAILP 472 (564)
Q Consensus 405 tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~--~~~~fD~Ii~~d~~y~~----------~~~~~ 472 (564)
+|+|+.+++.+++|+..|++.. .++.+...|.. +.+..+ ...+||+|++....|.. ..+..
T Consensus 181 VD~s~~al~~a~~n~~~~gl~~--~~v~~i~~D~~-----~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ 253 (332)
T 2igt_A 181 VDASKKAIGWAKENQVLAGLEQ--APIRWICEDAM-----KFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPL 253 (332)
T ss_dssp ECSCHHHHHHHHHHHHHHTCTT--SCEEEECSCHH-----HHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHcCCCc--cceEEEECcHH-----HHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHH
Confidence 9999999999999999998741 13555544332 111111 14689999975443332 24678
Q ss_pred HHHHHHHHhhccCCCCCCCCCcEEEEEEeec-cCChhHHHHHHH----HcCCeEE
Q 008457 473 LFATAKELTASSNKSLREDQQPAFILCHIFR-QVDEPSMLSAAT----QCGFRLV 522 (564)
Q Consensus 473 l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~----~~g~~~~ 522 (564)
+++.+.++| +|+| .+++..... ......|.+.+. +.|+++.
T Consensus 254 ll~~~~~~L-kpgG--------~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 254 MLDICREIL-SPKA--------LGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp HHHHHHHTB-CTTC--------CEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred HHHHHHHhc-CcCc--------EEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 899999999 9988 655554443 334445555444 5788876
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-11 Score=120.06 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=87.8
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
..+.+.......++.+|||||||+|.++..++..++.+|+++|+++ +++.+++|+..|+.. .++.+...|..+.
T Consensus 52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~---~~i~~~~~d~~~~-- 125 (340)
T 2fyt_A 52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLE---DTITLIKGKIEEV-- 125 (340)
T ss_dssp HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCT---TTEEEEESCTTTS--
T ss_pred HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCC---CcEEEEEeeHHHh--
Confidence 3455666656678899999999999888888777667999999996 999999999998874 5677776665432
Q ss_pred chhhhhhcCCCccEEEEece---eeCCCChHHHHHHHHHHhhccCC
Q 008457 444 IEAIKEENNEGFEVILGTDV---SYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~---~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+++.++||+|++..+ +.+....+.+++.+.++| +|+|
T Consensus 126 -----~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~L-kpgG 165 (340)
T 2fyt_A 126 -----HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYL-AKGG 165 (340)
T ss_dssp -----CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHE-EEEE
T ss_pred -----cCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhc-CCCc
Confidence 234568999998774 445667888999999999 9988
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=112.81 Aligned_cols=148 Identities=9% Similarity=0.002 Sum_probs=96.7
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCC--------CCCCceEEE
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP--------PFLAKLITK 434 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~--------~~~~~i~~~ 434 (564)
.|.+++... .+.++.+|||+|||+|..+..++..+ .+|+++|+|+.|++.++++...+... ....++.+.
T Consensus 10 ~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~g-~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
T 1pjz_A 10 DLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 87 (203)
T ss_dssp HHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred HHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHCC-CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEE
Confidence 345555432 23477899999999998887777764 58999999999999999876431000 001346666
Q ss_pred EeecCCCccchhhhhhcC-CCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEE-EEEeecc------
Q 008457 435 RLEWGNRDHIEAIKEENN-EGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFI-LCHIFRQ------ 504 (564)
Q Consensus 435 ~l~w~~~~~~~~~~~~~~-~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~-~~~~~r~------ 504 (564)
..|..+.. ..+ ++||+|++..++.+. .....+++.+.++| +|+| .++ ++.....
T Consensus 88 ~~d~~~l~-------~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~L-kpgG--------~~~l~~~~~~~~~~~~~ 151 (203)
T 1pjz_A 88 CGDFFALT-------ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALM-PQAC--------SGLLITLEYDQALLEGP 151 (203)
T ss_dssp EECCSSST-------HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHS-CSEE--------EEEEEEESSCSSSSSSC
T ss_pred ECccccCC-------cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHc-CCCc--------EEEEEEEecCccccCCC
Confidence 66554321 122 589999988777654 34567899999999 9987 633 3322211
Q ss_pred ---CChhHHHHHHHHcCCeEEEEcCCCC
Q 008457 505 ---VDEPSMLSAATQCGFRLVDKWPSKN 529 (564)
Q Consensus 505 ---~~~~~~~~~~~~~g~~~~~~~~~~~ 529 (564)
.+..++.+.+.+ ||+++.+.....
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~~~ 178 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQDT 178 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEESSC
T ss_pred CCCCCHHHHHHHhcC-CcEEEEeccccc
Confidence 133455666666 999988765543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-10 Score=108.15 Aligned_cols=154 Identities=15% Similarity=0.161 Sum_probs=107.7
Q ss_pred ccceechhHH-HHHHHHhc---CCCCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhcCCCC
Q 008457 353 TGLMLWESAH-LMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPP 426 (564)
Q Consensus 353 ~G~~~W~~~~-~l~~~l~~---~~~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~ 426 (564)
.....|+.-+ .||..++. +..+.+|.+|||||||+|.++..++.. + ..+|+++|+++++++.+++++...
T Consensus 50 ~e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---- 125 (233)
T 4df3_A 50 EEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---- 125 (233)
T ss_dssp EEEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC----
T ss_pred ceeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh----
Confidence 4578887654 56666664 345678999999999999888887765 3 459999999999999998876542
Q ss_pred CCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC
Q 008457 427 FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD 506 (564)
Q Consensus 427 ~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~ 506 (564)
.++.....+-... ... +.....+|+|+ +| +.++.....++..+.+.| ||+| .++++...+..+
T Consensus 126 --~ni~~V~~d~~~p---~~~-~~~~~~vDvVf-~d-~~~~~~~~~~l~~~~r~L-KpGG--------~lvI~ik~r~~d 188 (233)
T 4df3_A 126 --RNIFPILGDARFP---EKY-RHLVEGVDGLY-AD-VAQPEQAAIVVRNARFFL-RDGG--------YMLMAIKARSID 188 (233)
T ss_dssp --TTEEEEESCTTCG---GGG-TTTCCCEEEEE-EC-CCCTTHHHHHHHHHHHHE-EEEE--------EEEEEEECCHHH
T ss_pred --cCeeEEEEeccCc---ccc-ccccceEEEEE-Ee-ccCChhHHHHHHHHHHhc-cCCC--------EEEEEEecccCC
Confidence 2344444433322 111 23456899887 45 445566788999999999 9988 888876665422
Q ss_pred -----h---hHHHHHHHHcCCeEEEEcCC
Q 008457 507 -----E---PSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 507 -----~---~~~~~~~~~~g~~~~~~~~~ 527 (564)
. ..-.+.+.+.||++.+....
T Consensus 189 ~~~p~~~~~~~ev~~L~~~GF~l~e~i~L 217 (233)
T 4df3_A 189 VTTEPSEVYKREIKTLMDGGLEIKDVVHL 217 (233)
T ss_dssp HHTCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCChHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 1 12356667899999887643
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=116.86 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=76.2
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
|.++|..... .+.+|||||||+|.++..++.. ..+|+++|+|+.|++.++++ .++.+...+..+.
T Consensus 29 l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~----------~~v~~~~~~~e~~-- 93 (257)
T 4hg2_A 29 LFRWLGEVAP--ARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRH----------PRVTYAVAPAEDT-- 93 (257)
T ss_dssp HHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCC----------TTEEEEECCTTCC--
T ss_pred HHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhc----------CCceeehhhhhhh--
Confidence 4566665432 4579999999999776666654 46899999999998865431 3566666554432
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
++++++||+|+++.++++ -+.+.+++.+.++| +|+|
T Consensus 94 -----~~~~~sfD~v~~~~~~h~-~~~~~~~~e~~rvL-kpgG 129 (257)
T 4hg2_A 94 -----GLPPASVDVAIAAQAMHW-FDLDRFWAELRRVA-RPGA 129 (257)
T ss_dssp -----CCCSSCEEEEEECSCCTT-CCHHHHHHHHHHHE-EEEE
T ss_pred -----cccCCcccEEEEeeehhH-hhHHHHHHHHHHHc-CCCC
Confidence 456789999999998854 46899999999999 9988
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=116.47 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=86.0
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC-----C
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI-----S 143 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~-----~ 143 (564)
...++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|+++....+ .+++++.+|+... ++ .+ +
T Consensus 76 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-l~-~l~~~~~~ 153 (247)
T 1sui_A 76 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV-LD-EMIKDEKN 153 (247)
T ss_dssp HHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH-HH-HHHHSGGG
T ss_pred HhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH-HH-HHHhccCC
Confidence 335678999999999999999999876 7899999999999999998865433 4789999987532 10 11 1
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.++||+|++.... .+...+++++.++|||||++++.+.
T Consensus 154 ~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 154 HGSYDFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp TTCBSEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred CCCEEEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecC
Confidence 5789999986542 3567899999999999999998653
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=115.14 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=82.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||+|||+|.+...+++..+.+|+++|+|+.+++.+++++..++. ++.+...|..+. ++++++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~-------~~~~~~ 89 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF-----KLNISKGDIRKL-------PFKDES 89 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC-----CCCEEECCTTSC-------CSCTTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----ceEEEECchhhC-------CCCCCc
Confidence 36789999999999664444444556999999999999999999887652 345555555432 234578
Q ss_pred ccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 455 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 455 fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
||+|++..++++. .....+++.+.++| +|+| .+++....
T Consensus 90 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~ 130 (209)
T 2p8j_A 90 MSFVYSYGTIFHMRKNDVKEAIDEIKRVL-KPGG--------LACINFLT 130 (209)
T ss_dssp EEEEEECSCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEEE
T ss_pred eeEEEEcChHHhCCHHHHHHHHHHHHHHc-CCCc--------EEEEEEec
Confidence 9999999998887 68899999999999 9988 67666544
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-11 Score=120.74 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=89.1
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+.+..+..+.++++|||+|||+|.++..++..+..+|+++|++ .+++.+++|+..|+.. +++.+...++.+.
T Consensus 55 ~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~---~~v~~~~~d~~~~--- 127 (349)
T 3q7e_A 55 RNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLD---HVVTIIKGKVEEV--- 127 (349)
T ss_dssp HHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCT---TTEEEEESCTTTC---
T ss_pred HHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCC---CcEEEEECcHHHc---
Confidence 34455555566889999999999988888887777799999999 5999999999998875 5688887777654
Q ss_pred hhhhhhcCCCccEEEEece---eeCCCChHHHHHHHHHHhhccCC
Q 008457 445 EAIKEENNEGFEVILGTDV---SYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~---~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+++.++||+|++..+ +.+....+.+++.+.++| +|+|
T Consensus 128 ----~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~L-kpgG 167 (349)
T 3q7e_A 128 ----ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWL-APDG 167 (349)
T ss_dssp ----CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHE-EEEE
T ss_pred ----cCCCCceEEEEEccccccccCchhHHHHHHHHHHhC-CCCC
Confidence 234579999998665 345678999999999999 9988
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-11 Score=113.40 Aligned_cols=121 Identities=14% Similarity=0.107 Sum_probs=92.0
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
|-....+..++.......++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..+ +++.+...|
T Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d 105 (216)
T 3ofk_A 33 PFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRW------SHISWAATD 105 (216)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTC------SSEEEEECC
T ss_pred HhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccC------CCeEEEEcc
Confidence 43444455555544444577899999999998777777664 58999999999999999987653 357777776
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCCCh---HHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAI---LPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~---~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
..+.. ++++||+|+++.++++..+. ..+++.+.++| +|+| .++++...
T Consensus 106 ~~~~~--------~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~ 156 (216)
T 3ofk_A 106 ILQFS--------TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKML-APGG--------HLVFGSAR 156 (216)
T ss_dssp TTTCC--------CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTE-EEEE--------EEEEEEEC
T ss_pred hhhCC--------CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHc-CCCC--------EEEEEecC
Confidence 65431 35789999999999988776 46699999999 9988 78876543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=128.50 Aligned_cols=108 Identities=22% Similarity=0.237 Sum_probs=87.5
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
+.+...++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++....+ .+++++.+|+.... ++ ++
T Consensus 152 ~~l~~~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~----~~-~~ 224 (480)
T 3b3j_A 152 QNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS----LP-EQ 224 (480)
T ss_dssp HTGGGTTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC----CS-SC
T ss_pred HhhhhcCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc----cC-CC
Confidence 3344457889999999999999988875 467999999998 9999988765433 57999999986532 22 58
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
||+|+++.+++|+..++....+.++.++|||||.+++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 9999998887877656777788899999999999985
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=112.98 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-----CCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++.... ..+++++.+|+..... ...++||
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~fD 153 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE---NVTNTYD 153 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH---HCCSCEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHH---hCCCCce
Confidence 4678999999999999999988766789999999999999999986532 4678999999854211 1257899
Q ss_pred EEEEcccccCCChhHH--HHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPEKM--SLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~--~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++....++.+.... ..++++++++|+|||.+++..
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 9999654443332333 689999999999999999864
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=6e-11 Score=119.76 Aligned_cols=116 Identities=16% Similarity=0.061 Sum_probs=90.3
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~ 144 (564)
+..+....++.+|||+|||+|.++..++... +..+++|+|+++.+++.|+++....+ .++++.++|+.... .+.
T Consensus 195 l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~----~~~ 270 (354)
T 3tma_A 195 LLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP----RFF 270 (354)
T ss_dssp HHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGG----GTC
T ss_pred HHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCc----ccc
Confidence 3344455778999999999999999999985 67899999999999999999876444 27999999986542 245
Q ss_pred CceeEEEEcccccCCC------hhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 145 SSIDIVTMVFVLSAVS------PEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~------~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+.||+|+++-.+.... ......+++++.++|||||.+++.+.
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 6799999976543221 12236799999999999999998643
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.6e-11 Score=112.00 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=98.7
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||+|||+|.++..++.. +.+|+++|+++.+++.++++.. .+...|..+.. .++++++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~~-----------~~~~~d~~~~~-----~~~~~~~ 93 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKLD-----------HVVLGDIETMD-----MPYEEEQ 93 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTSS-----------EEEESCTTTCC-----CCSCTTC
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCC-----------cEEEcchhhcC-----CCCCCCc
Confidence 47789999999999888877777 5899999999999998887531 23333333210 1234578
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee----------------------------ccCC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF----------------------------RQVD 506 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~----------------------------r~~~ 506 (564)
||+|++++++++..+...+++.+.++| +|+| .++++.+. +..+
T Consensus 94 fD~v~~~~~l~~~~~~~~~l~~~~~~L-~~gG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (230)
T 3cc8_A 94 FDCVIFGDVLEHLFDPWAVIEKVKPYI-KQNG--------VILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFT 164 (230)
T ss_dssp EEEEEEESCGGGSSCHHHHHHHTGGGE-EEEE--------EEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCC
T ss_pred cCEEEECChhhhcCCHHHHHHHHHHHc-CCCC--------EEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEec
Confidence 999999999999999999999999999 9988 77776543 1123
Q ss_pred hhHHHHHHHHcCCeEEEEcCCCC
Q 008457 507 EPSMLSAATQCGFRLVDKWPSKN 529 (564)
Q Consensus 507 ~~~~~~~~~~~g~~~~~~~~~~~ 529 (564)
...+.+.+.++||++.++.....
T Consensus 165 ~~~~~~~l~~~Gf~~~~~~~~~~ 187 (230)
T 3cc8_A 165 FNEMLRMFLKAGYSISKVDRVYV 187 (230)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEEEeccc
Confidence 45778888999999998875533
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-11 Score=111.85 Aligned_cols=109 Identities=6% Similarity=0.010 Sum_probs=83.8
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||||||+|.++..++..+..+|+++|+|+.+++.+++|+..++. .++.+...|+.+ ..+...++|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~----~~v~~~~~D~~~------~~~~~~~~f 123 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA----GNARVVNSNAMS------FLAQKGTPH 123 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC----CSEEEECSCHHH------HHSSCCCCE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC----CcEEEEECCHHH------HHhhcCCCC
Confidence 6789999999999888877777777999999999999999999998875 346655443321 112235689
Q ss_pred cEEEEeceeeCCCChHHHHHHHHH--HhhccCCCCCCCCCcEEEEEEeecc
Q 008457 456 EVILGTDVSYIPEAILPLFATAKE--LTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~--ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
|+|++.. .|.......+++.+.+ +| +|+| .++++.....
T Consensus 124 D~V~~~~-p~~~~~~~~~l~~l~~~~~L-~pgG--------~l~i~~~~~~ 164 (202)
T 2fpo_A 124 NIVFVDP-PFRRGLLEETINLLEDNGWL-ADEA--------LIYVESEVEN 164 (202)
T ss_dssp EEEEECC-SSSTTTHHHHHHHHHHTTCE-EEEE--------EEEEEEEGGG
T ss_pred CEEEECC-CCCCCcHHHHHHHHHhcCcc-CCCc--------EEEEEECCCc
Confidence 9998654 4778888889999977 49 9987 7877766554
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-10 Score=108.40 Aligned_cols=138 Identities=20% Similarity=0.171 Sum_probs=93.5
Q ss_pred hcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh
Q 008457 369 ARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI 447 (564)
Q Consensus 369 ~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~ 447 (564)
.....+.++.+|||||||+|.++..++... ..+|+++|+++.+++.+++|+..+ .++.+...|..+. ...
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~v~~~~~d~~~~---~~~ 137 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER------ENIIPILGDANKP---QEY 137 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC------TTEEEEECCTTCG---GGG
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC------CCeEEEECCCCCc---ccc
Confidence 344445578899999999998888877763 479999999999999999997654 3466555554431 110
Q ss_pred hhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-h-------hHHHHHHHHcCC
Q 008457 448 KEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-E-------PSMLSAATQCGF 519 (564)
Q Consensus 448 ~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~-~-------~~~~~~~~~~g~ 519 (564)
.++. ++||+|+ .|+ ........+++.+.++| +|+| .++++...+... . ..-+..+.+.||
T Consensus 138 ~~~~-~~~D~v~-~~~-~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~l~~l~~~Gf 205 (230)
T 1fbn_A 138 ANIV-EKVDVIY-EDV-AQPNQAEILIKNAKWFL-KKGG--------YGMIAIKARSIDVTKDPKEIFKEQKEILEAGGF 205 (230)
T ss_dssp TTTS-CCEEEEE-ECC-CSTTHHHHHHHHHHHHE-EEEE--------EEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTE
T ss_pred cccC-ccEEEEE-Eec-CChhHHHHHHHHHHHhC-CCCc--------EEEEEEecCCCCCCCCHHHhhHHHHHHHHHCCC
Confidence 1223 6899998 232 22333478899999999 9988 777764433211 1 122336778899
Q ss_pred eEEEEcCC
Q 008457 520 RLVDKWPS 527 (564)
Q Consensus 520 ~~~~~~~~ 527 (564)
++.++...
T Consensus 206 ~~~~~~~~ 213 (230)
T 1fbn_A 206 KIVDEVDI 213 (230)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcc
Confidence 99887644
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.22 E-value=8e-11 Score=114.44 Aligned_cols=134 Identities=10% Similarity=0.118 Sum_probs=99.4
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhc-CCCCCCCceEEEEeecCCCcc
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~i~~~~l~w~~~~~ 443 (564)
++.......++.+|||+|||+|.++..++.. ...+|+++|+++.+++.+++|+..+ +. .++.+...|+.+.
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~----~~v~~~~~d~~~~-- 174 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI----GNVRTSRSDIADF-- 174 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC----TTEEEECSCTTTC--
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC----CcEEEEECchhcc--
Confidence 4444445567889999999999888877765 2579999999999999999999887 63 4577766665431
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEE
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD 523 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~ 523 (564)
++.++||+|++ +......+++.+.++| +|+| .++++..... ....+.+.+.+.||...+
T Consensus 175 ------~~~~~fD~Vi~-----~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~-~~~~~~~~l~~~Gf~~~~ 233 (275)
T 1yb2_A 175 ------ISDQMYDAVIA-----DIPDPWNHVQKIASMM-KPGS--------VATFYLPNFD-QSEKTVLSLSASGMHHLE 233 (275)
T ss_dssp ------CCSCCEEEEEE-----CCSCGGGSHHHHHHTE-EEEE--------EEEEEESSHH-HHHHHHHHSGGGTEEEEE
T ss_pred ------CcCCCccEEEE-----cCcCHHHHHHHHHHHc-CCCC--------EEEEEeCCHH-HHHHHHHHHHHCCCeEEE
Confidence 23468999996 4456678999999999 9988 7777765442 223567778889999998
Q ss_pred EcCC
Q 008457 524 KWPS 527 (564)
Q Consensus 524 ~~~~ 527 (564)
+.+.
T Consensus 234 ~~~~ 237 (275)
T 1yb2_A 234 TVEL 237 (275)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8743
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-12 Score=120.58 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=86.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC----CCC
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI----SPS 145 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~----~~~ 145 (564)
..++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|+++....+ .+++++++|+..... .+ ..+
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~--~~~~~~~~~ 135 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLH--SLLNEGGEH 135 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHH--HHHHHHCSS
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH--HHhhccCCC
Confidence 35678999999999999999999865 7899999999999999988765433 579999999853211 11 147
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+||+|++... ......+++++.++|||||++++.+..
T Consensus 136 ~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 136 QFDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp CEEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred CEeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 8999998654 246677999999999999999997554
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-12 Score=121.93 Aligned_cols=145 Identities=20% Similarity=0.255 Sum_probs=98.6
Q ss_pred ceechhHH--HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceE
Q 008457 355 LMLWESAH--LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 432 (564)
Q Consensus 355 ~~~W~~~~--~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~ 432 (564)
+..|+..+ .+++.+. .+|.+|||||||+|..+..++...+.+|+++|+++.+++.++++...++. .+.
T Consensus 42 m~~we~~~m~~~a~~~~-----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~-----~~~ 111 (236)
T 3orh_A 42 MERWETPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-----KVI 111 (236)
T ss_dssp EEGGGHHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS-----EEE
T ss_pred HHHHHHHHHHHHHHhhc-----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC-----ceE
Confidence 45687654 3555442 37889999999999777777666667999999999999999999876553 456
Q ss_pred EEEeecCCCccchhhhhhcCCCccEEEEecee------eCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---
Q 008457 433 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVS------YIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--- 503 (564)
Q Consensus 433 ~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~------y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--- 503 (564)
+...+|... ...+++++||.|+ .|+. .+..+.+.+++.+.++| ||+| +++++....
T Consensus 112 ~~~~~a~~~-----~~~~~~~~FD~i~-~D~~~~~~~~~~~~~~~~~~~e~~rvL-kPGG--------~l~f~~~~~~~~ 176 (236)
T 3orh_A 112 PLKGLWEDV-----APTLPDGHFDGIL-YDTYPLSEETWHTHQFNFIKNHAFRLL-KPGG--------VLTYCNLTSWGE 176 (236)
T ss_dssp EEESCHHHH-----GGGSCTTCEEEEE-ECCCCCBGGGTTTHHHHHHHHTHHHHE-EEEE--------EEEECCHHHHHH
T ss_pred EEeehHHhh-----cccccccCCceEE-Eeeeecccchhhhcchhhhhhhhhhee-CCCC--------EEEEEecCCchh
Confidence 655555321 1245677899986 3443 33445778999999999 9988 777654210
Q ss_pred --c--CC------hhHHHHHHHHcCCeEEEE
Q 008457 504 --Q--VD------EPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 504 --~--~~------~~~~~~~~~~~g~~~~~~ 524 (564)
. .. .......+.++||+++.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i 207 (236)
T 3orh_A 177 LMKSKYSDITIMFEETQVPALLEAGFRRENI 207 (236)
T ss_dssp HTTTTCSCHHHHHHHHTHHHHHHHTCCGGGE
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHcCCeEEEE
Confidence 0 01 112345567889986544
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-11 Score=121.24 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.++.+|||||||+|..+..+++..+..+|+++|+|+.+++.|+++... ...+++++++|+... + ..+++++||
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~-l-~~~~~~~fD 196 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-L-KNAAEGSYD 196 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-H-HTSCTTCEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH-H-HhccCCCcc
Confidence 567899999999999999999876678999999999999999987643 236799999997542 1 122457899
Q ss_pred EEEEcccccCCChhH--HHHHHHHHHhccCCCeEEEEE
Q 008457 149 IVTMVFVLSAVSPEK--MSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~--~~~~l~~~~r~LkpgG~lii~ 184 (564)
+|++.....+-+... ...++++++++|+|||++++.
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999965422211122 468999999999999999985
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.7e-11 Score=114.74 Aligned_cols=136 Identities=12% Similarity=0.042 Sum_probs=102.6
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
++.......++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..++.. +++.+...|+.+
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~---- 156 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD---DRVTIKLKDIYE---- 156 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT---TTEEEECSCGGG----
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC---CceEEEECchhh----
Confidence 3433344567889999999999888888776 4 579999999999999999999988764 457777665542
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcC--CeEE
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG--FRLV 522 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g--~~~~ 522 (564)
.++.++||+|++ +......+++.+.++| +|+| .+++...... ....+.+.+.+.| |...
T Consensus 157 ----~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L-~~gG--------~l~~~~~~~~-~~~~~~~~l~~~g~~f~~~ 217 (255)
T 3mb5_A 157 ----GIEEENVDHVIL-----DLPQPERVVEHAAKAL-KPGG--------FFVAYTPCSN-QVMRLHEKLREFKDYFMKP 217 (255)
T ss_dssp ----CCCCCSEEEEEE-----CSSCGGGGHHHHHHHE-EEEE--------EEEEEESSHH-HHHHHHHHHHHTGGGBSCC
T ss_pred ----ccCCCCcCEEEE-----CCCCHHHHHHHHHHHc-CCCC--------EEEEEECCHH-HHHHHHHHHHHcCCCcccc
Confidence 134568999986 3456678899999999 9987 6666544332 2346788888999 9888
Q ss_pred EEcCCC
Q 008457 523 DKWPSK 528 (564)
Q Consensus 523 ~~~~~~ 528 (564)
++++..
T Consensus 218 ~~~e~~ 223 (255)
T 3mb5_A 218 RTINVL 223 (255)
T ss_dssp EEECCC
T ss_pred EEEEEe
Confidence 888663
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-11 Score=113.40 Aligned_cols=105 Identities=18% Similarity=0.061 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||||||+|..+..+++..+ +.+|+++|+|+.+++.|+++....+ .+++++++|.... + +..++ ||+|
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~-fD~v 130 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI-A--AGQRD-IDIL 130 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH-H--TTCCS-EEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH-h--ccCCC-CCEE
Confidence 4678999999999999999998876 7899999999999999998765333 4689999987532 1 22345 9999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++... ..+...+++++.++|||||.+++.+..
T Consensus 131 ~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 162 (210)
T 3c3p_A 131 FMDCD-----VFNGADVLERMNRCLAKNALLIAVNAL 162 (210)
T ss_dssp EEETT-----TSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred EEcCC-----hhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence 98743 135678999999999999999986543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-10 Score=113.97 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-----CCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.++.+|||||||+|..+..+++..+..+|+++|+|+.+++.|+++.... ..+++++++|+.... +..+++||
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l---~~~~~~fD 191 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFL---ENVTNTYD 191 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHH---HHCCSCEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHH---hhcCCCce
Confidence 4678999999999999999988766789999999999999999886531 357999999975421 11357899
Q ss_pred EEEEcccccCCChhHH--HHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPEKM--SLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~--~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++...-..-+.... ..+++++++.|+|||++++..
T Consensus 192 vIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 192 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999653222111222 689999999999999999864
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.1e-11 Score=112.76 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=88.4
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccc--c----
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDD--L---- 138 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~--~---- 138 (564)
..++...++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|+++....+ .++.+.++|+.... +
T Consensus 53 ~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~ 132 (239)
T 2hnk_A 53 NILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSK 132 (239)
T ss_dssp HHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCS
T ss_pred HHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhc
Confidence 3333345788999999999999999999876 6899999999999999998865433 35889998875321 1
Q ss_pred -----cCCCCC--CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 139 -----SRQISP--SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 139 -----~~~~~~--~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
...+++ ++||+|++.... .....+++++.++|+|||++++.+..
T Consensus 133 ~~~~~~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 133 SAPSWASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp SCCGGGTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ccccccccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 112333 789999997543 35568899999999999999987543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=114.71 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=83.2
Q ss_pred CCCeEEEeCCcccHHHHHHHh--cCCCEEEEEcCChhHHHHHHHHHHhc-CCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAA--GSADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~--~~~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
++.+|||||||+|.++..++. ....+|+++|+++.+++.+++++..+ +. ..++.+...|..+.... ....+..
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~v~~~~~d~~~~~~~-~~~~~~~ 111 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT---YKNVSFKISSSDDFKFL-GADSVDK 111 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C---CTTEEEEECCTTCCGGG-CTTTTTS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC---CCceEEEEcCHHhCCcc-ccccccC
Confidence 788999999999988777775 35779999999999999999999886 22 25688888777653210 0001123
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
++||+|+++.++++. +...+++.+.++| +|+|
T Consensus 112 ~~fD~V~~~~~l~~~-~~~~~l~~~~~~L-kpgG 143 (299)
T 3g5t_A 112 QKIDMITAVECAHWF-DFEKFQRSAYANL-RKDG 143 (299)
T ss_dssp SCEEEEEEESCGGGS-CHHHHHHHHHHHE-EEEE
T ss_pred CCeeEEeHhhHHHHh-CHHHHHHHHHHhc-CCCc
Confidence 799999999999999 9999999999999 9987
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=112.05 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+.+|||||||+|.++..+++..+..+|+++|+++.+++.|+++... ...+++++.+|+... + +..+++||
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-l--~~~~~~fD 150 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-I--AKSENQYD 150 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-H--HTCCSCEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-H--hhCCCCee
Confidence 467899999999999999998775568999999999999999987632 246899999998542 1 11357899
Q ss_pred EEEEcccccCCChh--HHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPE--KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~--~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++....++.+.. ....++++++++|+|||++++..
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99996544322211 12579999999999999999864
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=112.52 Aligned_cols=141 Identities=15% Similarity=0.190 Sum_probs=105.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||+|-++..++...|..+|+++|+++.|++.++.+....+.+..+...|.... .+.+.||+|+++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~-----~p~~~~DvaL~l 205 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLED-----RLDEPADVTLLL 205 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTS-----CCCSCCSEEEET
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeeccc-----CCCCCcchHHHH
Confidence 458899999999999999998888899999999999999999999876677788888888643 367889999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
-+++|+..+.....+ ++...|+|+|.++-...-. +.... .+... .-.+.|...+.+.|.
T Consensus 206 kti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ks-------l~Grs-----------~gm~~--~Y~~~~e~~~~~~g~ 264 (281)
T 3lcv_B 206 KTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKS-------LGQRS-----------KGMFQ--NYSQSFESQARERSC 264 (281)
T ss_dssp TCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------------------------CHHH--HHHHHHHHHHHHHTC
T ss_pred HHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchh-------hcCCC-----------cchhh--HHHHHHHHHHHhcCC
Confidence 999999544444555 9999999999988653310 00000 11111 126778888888898
Q ss_pred cEEEeee
Q 008457 234 DVEELGL 240 (564)
Q Consensus 234 ~~~~~~~ 240 (564)
.+.+...
T Consensus 265 ~~~~~~~ 271 (281)
T 3lcv_B 265 RIQRLEI 271 (281)
T ss_dssp CEEEEEE
T ss_pred ceeeeee
Confidence 6655544
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=119.25 Aligned_cols=143 Identities=11% Similarity=0.072 Sum_probs=95.0
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCC-----------CC--------------
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF-----------LA-------------- 429 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~-----------~~-------------- 429 (564)
.++.+|||||||+|.+..+++...+.+|+++|+|+.+++.+++++..+..... .+
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 37789999999999643333333466999999999999999987653210000 00
Q ss_pred -ceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeC----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--
Q 008457 430 -KLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-- 502 (564)
Q Consensus 430 -~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~----~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-- 502 (564)
.+.+...|..+...+.. ..+++++||+|+++.++++ ..+...+++.+.++| +|+| .++++...
T Consensus 150 ~~~~~~~~D~~~~~~~~~-~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~L-kpGG--------~l~~~~~~~~ 219 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGA-GSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLL-RPGG--------HLLLIGALEE 219 (289)
T ss_dssp HEEEEECCCTTSSSTTCS-SCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE-EEEE--------EEEEEEEESC
T ss_pred hhceEEecccCCCCCccc-cccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhc-CCCC--------EEEEEEecCc
Confidence 12233333332111000 0123467999999999887 557899999999999 9988 77765321
Q ss_pred ------------ccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 503 ------------RQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 503 ------------r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
+..+...+.+.+.++||+++++...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 220 SWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp CEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 2234567788889999999988643
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.9e-11 Score=115.55 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=86.6
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..++.+|||+|||+|.++..+++..+..+|+|+|+++.+++.|+++....+ .++.++++|+... +. .++||+|+
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~----~~-~~~~D~Vi 191 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV----EL-KDVADRVI 191 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC----CC-TTCEEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc----Cc-cCCceEEE
Confidence 367889999999999999999998767799999999999999998876444 4688999998653 11 56899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
+.... ....++.++.+.|+|||.++++++..
T Consensus 192 ~d~p~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 192 MGYVH------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ECCcc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 97543 34568999999999999999986543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=115.37 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCC--Ccee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISP--SSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~--~~fD 148 (564)
.++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|+++....+ .++++..+|+.......+..+ ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 4678999999999999999998865 6899999999999999998764333 468999988743211111223 7899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+|++... ..+...+++++.++|+|||.+++.+..
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 9998654 246678999999999999999987544
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.8e-11 Score=115.36 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=99.0
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
.+.+|||||||+|.++..++.. +.+|+++|+++.+++.+++++..++... ..++.+...|..+. +. +++|
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~v~~~~~d~~~~-------~~-~~~f 151 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADV-RDRCTLVQGDMSAF-------AL-DKRF 151 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHH-HTTEEEEECBTTBC-------CC-SCCE
T ss_pred CCCcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhccccc-ccceEEEeCchhcC-------Cc-CCCc
Confidence 3459999999999887777776 4689999999999999999988754210 03577777776543 11 4689
Q ss_pred cEEEEe-ceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee------------------------------
Q 008457 456 EVILGT-DVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIF------------------------------ 502 (564)
Q Consensus 456 D~Ii~~-d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~------------------------------ 502 (564)
|+|+++ .++.+.. ....+++.+.++| +|+| .+++....
T Consensus 152 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 222 (299)
T 3g2m_A 152 GTVVISSGSINELDEADRRGLYASVREHL-EPGG--------KFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHL 222 (299)
T ss_dssp EEEEECHHHHTTSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEECCHHHHSCCCCC-------------CCEEEE
T ss_pred CEEEECCcccccCCHHHHHHHHHHHHHHc-CCCc--------EEEEEeecCccccccchhccceeecCCCcEEEEEEEEe
Confidence 998866 4444333 4689999999999 9988 55554322
Q ss_pred ---------------------------ccCChhHHHHHHHHcCCeEEEEcCCCCC
Q 008457 503 ---------------------------RQVDEPSMLSAATQCGFRLVDKWPSKNS 530 (564)
Q Consensus 503 ---------------------------r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 530 (564)
|..+...+.+.++++||+++++.....+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~ 277 (299)
T 3g2m_A 223 PAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASG 277 (299)
T ss_dssp EEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred ccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCC
Confidence 1225567889999999999999755433
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-11 Score=116.48 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCce---e
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSI---D 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~f---D 148 (564)
.++.+|||+|||+|.++..++.. |+.+|+|+|+|+.+++.|+++....+ .+++++++|+... + + ++| |
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~----~-~~f~~~D 194 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-F----K-EKFASIE 194 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-G----G-GGTTTCC
T ss_pred cCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-c----c-cccCCCC
Confidence 36689999999999999999999 88999999999999999998875443 3599999998652 1 2 478 9
Q ss_pred EEEEc------------ccccCCCh------hHHHHHHHHHH-hccCCCeEEEEE
Q 008457 149 IVTMV------------FVLSAVSP------EKMSLVLQNIK-KVLKPTGYVLFR 184 (564)
Q Consensus 149 ~V~~~------------~vl~~~~~------~~~~~~l~~~~-r~LkpgG~lii~ 184 (564)
+|+++ .+. |-|. .+...+++++. +.|+|||.+++.
T Consensus 195 ~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 195 MILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp EEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred EEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 99997 222 3321 11226899999 999999999984
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.1e-11 Score=110.54 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=91.0
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc-CCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-NEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~-~~~ 454 (564)
++.+|||+|||+|.++..++.. +.+|+++|+++.+++.+++| . .++.+...|+.+.. ++. +++
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~----~~~~~~~~d~~~~~------~~~~~~~ 111 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN-----A----PHADVYEWNGKGEL------PAGLGAP 111 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH-----C----TTSEEEECCSCSSC------CTTCCCC
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh-----C----CCceEEEcchhhcc------CCcCCCC
Confidence 6789999999999877777766 56999999999999999998 1 34677777764321 233 579
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
||+|+++ .....+++.+.++| +|+| .++ ..........+.+.+.+.||.+.++.
T Consensus 112 fD~v~~~------~~~~~~l~~~~~~L-kpgG--------~l~--~~~~~~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 112 FGLIVSR------RGPTSVILRLPELA-APDA--------HFL--YVGPRLNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp EEEEEEE------SCCSGGGGGHHHHE-EEEE--------EEE--EEESSSCCTHHHHHHHHTTCEEEEEE
T ss_pred EEEEEeC------CCHHHHHHHHHHHc-CCCc--------EEE--EeCCcCCHHHHHHHHHHCCCeEEEEE
Confidence 9999987 46778899999999 9988 666 33333444578888999999998875
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-10 Score=102.87 Aligned_cols=133 Identities=18% Similarity=0.066 Sum_probs=90.6
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
.+.+..|.+++.... .++.+|||+|||+|.++..++..+ +|+++|+|+.+++. . .++.+...|
T Consensus 7 ~~~~~~l~~~l~~~~--~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~-------~~~~~~~~d 69 (170)
T 3q87_B 7 GEDTYTLMDALEREG--LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------H-------RGGNLVRAD 69 (170)
T ss_dssp CHHHHHHHHHHHHHT--CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------C-------SSSCEEECS
T ss_pred CccHHHHHHHHHhhc--CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------c-------cCCeEEECC
Confidence 455666777764421 356799999999998777777666 99999999999987 1 234555555
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCCC---------hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEA---------ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP 508 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~ 508 (564)
+.+. +.+++||+|+++.+.+.... ...+++.+.+.+ |+| .+++..... ....
T Consensus 70 ~~~~--------~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--pgG--------~l~~~~~~~-~~~~ 130 (170)
T 3q87_B 70 LLCS--------INQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV--TVG--------MLYLLVIEA-NRPK 130 (170)
T ss_dssp TTTT--------BCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC--CSS--------EEEEEEEGG-GCHH
T ss_pred hhhh--------cccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC--CCC--------EEEEEEecC-CCHH
Confidence 5432 23368999998765553222 245566666666 666 777765433 3344
Q ss_pred HHHHHHHHcCCeEEEEcC
Q 008457 509 SMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~~ 526 (564)
.+.+.+.+.||++..+..
T Consensus 131 ~l~~~l~~~gf~~~~~~~ 148 (170)
T 3q87_B 131 EVLARLEERGYGTRILKV 148 (170)
T ss_dssp HHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEEe
Confidence 678888899999998873
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-11 Score=117.20 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=87.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||||||+|.++..++..+..+|+++|+|+.+++.++++...++ .++.+...|+.+. +.++++++|
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~-----~~~~~~~~f 129 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-----HKVIPLKGLWEDV-----APTLPDGHF 129 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-----SEEEEEESCHHHH-----GGGSCTTCE
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-----CCeEEEecCHHHh-----hcccCCCce
Confidence 677999999999988777766566699999999999999999887654 3455555544321 123556799
Q ss_pred cEEEE-eceee----CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc--------CC-----hhHHHHHHHHc
Q 008457 456 EVILG-TDVSY----IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------VD-----EPSMLSAATQC 517 (564)
Q Consensus 456 D~Ii~-~d~~y----~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~--------~~-----~~~~~~~~~~~ 517 (564)
|+|++ .-.+. +......+++.+.++| +|+| .++++..... .. .......+.++
T Consensus 130 D~V~~d~~~~~~~~~~~~~~~~~l~~~~r~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 200 (236)
T 1zx0_A 130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLL-KPGG--------VLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEA 200 (236)
T ss_dssp EEEEECCCCCBGGGTTTHHHHHHHHTHHHHE-EEEE--------EEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHT
T ss_pred EEEEECCcccchhhhhhhhHHHHHHHHHHhc-CCCe--------EEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHC
Confidence 99997 33321 1223447799999999 9988 7766533211 00 02334667789
Q ss_pred CCeE
Q 008457 518 GFRL 521 (564)
Q Consensus 518 g~~~ 521 (564)
||.+
T Consensus 201 GF~~ 204 (236)
T 1zx0_A 201 GFRR 204 (236)
T ss_dssp TCCG
T ss_pred CCCC
Confidence 9984
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.6e-11 Score=119.74 Aligned_cols=111 Identities=18% Similarity=0.142 Sum_probs=89.1
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
...+++.......++++|||||||+|.++..++..++++|+++|++ .+++.+++++..|++. +++.+...|..+.
T Consensus 50 ~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~- 124 (376)
T 3r0q_C 50 AYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLD---HIVEVIEGSVEDI- 124 (376)
T ss_dssp HHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCT---TTEEEEESCGGGC-
T ss_pred HHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCC---CeEEEEECchhhc-
Confidence 3456676677778999999999999988888887777799999999 9999999999999875 5677777666432
Q ss_pred cchhhhhhcCCCccEEEEeceeeC---CCChHHHHHHHHHHhhccCC
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYI---PEAILPLFATAKELTASSNK 486 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~---~~~~~~l~~~~~~ll~~~~g 486 (564)
.++ ++||+|++.-+.|. ......+++.+.++| +|+|
T Consensus 125 ------~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~L-kpgG 163 (376)
T 3r0q_C 125 ------SLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWL-KPTG 163 (376)
T ss_dssp ------CCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHE-EEEE
T ss_pred ------CcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhC-CCCe
Confidence 122 68999998554444 367888999999999 9988
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-11 Score=118.17 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=75.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc---ccCCCeeEE--EecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD---FTETRVSTF--VCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~---~~~~~i~~~--~~d~~~~~~~~~~~~~~fD 148 (564)
.++.+|||+|||+|.++..+++. .+|+|+|+++ |+..+++... ..+.++.++ ++|+.. +++++||
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~------l~~~~fD 142 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT------LPVERTD 142 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT------SCCCCCS
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH------CCCCCCc
Confidence 67899999999999999988876 5799999999 5433322211 011267888 888864 2467999
Q ss_pred EEEEcccccCCCh---hHH--HHHHHHHHhccCCCe--EEEEEecC
Q 008457 149 IVTMVFVLSAVSP---EKM--SLVLQNIKKVLKPTG--YVLFRDYA 187 (564)
Q Consensus 149 ~V~~~~vl~~~~~---~~~--~~~l~~~~r~LkpgG--~lii~~~~ 187 (564)
+|+|..+ ++.+. +.. ..+|..+.++||||| .+++..+.
T Consensus 143 ~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 143 VIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9999877 44321 111 138899999999999 99987665
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-10 Score=114.46 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=99.6
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
..++.+|||+|||+|.++..++...+..+|+|+|+|+.|++.|+++....+ .++++.++|+... ++++++||+|
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~----~~~~~~fD~I 290 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL----SQYVDSVDFA 290 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG----GGTCSCEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC----CcccCCcCEE
Confidence 467899999999999999999998655589999999999999999876544 4799999999654 3356899999
Q ss_pred EEcccccCCC------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHH
Q 008457 151 TMVFVLSAVS------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFL 224 (564)
Q Consensus 151 ~~~~vl~~~~------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (564)
+++-.+..-. .+....+++++.++| ||.+++... +.+.+
T Consensus 291 i~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~---------------------------------~~~~~ 335 (373)
T 3tm4_A 291 ISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT---------------------------------EKKAI 335 (373)
T ss_dssp EEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES---------------------------------CHHHH
T ss_pred EECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC---------------------------------CHHHH
Confidence 9976544221 122367889999988 444444321 46777
Q ss_pred HHHHHhCCCcEEEeeeeec
Q 008457 225 TSLFKENGFDVEELGLCCK 243 (564)
Q Consensus 225 ~~~l~~aGf~~~~~~~~~~ 243 (564)
.+.+.+.||+..+....++
T Consensus 336 ~~~~~~~G~~~~~~~~~~n 354 (373)
T 3tm4_A 336 EEAIAENGFEIIHHRVIGH 354 (373)
T ss_dssp HHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHHcCCEEEEEEEEEc
Confidence 8899999999877655443
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-10 Score=106.49 Aligned_cols=130 Identities=10% Similarity=-0.002 Sum_probs=92.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh-hhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~-~~~~~ 453 (564)
.+.+|||||||+|.++..++... ..+|+++|+++.+++.+++|+..+++ .++.+...|..+ +. .++++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~----~nv~~~~~d~~~------l~~~~~~~ 107 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA----QNVKLLNIDADT------LTDVFEPG 107 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC----SSEEEECCCGGG------HHHHCCTT
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC----CCEEEEeCCHHH------HHhhcCcC
Confidence 56799999999998888777764 56999999999999999999998775 346666554432 11 14567
Q ss_pred CccEEEEecee-eCC-------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 454 GFEVILGTDVS-YIP-------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 454 ~fD~Ii~~d~~-y~~-------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.||.|+..-.. +.. ...+.+++.+.++| +|+| .+++........ ....+.+.+.||....+.
T Consensus 108 ~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~L-kpgG--------~l~~~td~~~~~-~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 108 EVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVM-GKGG--------SIHFKTDNRGLF-EYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp SCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHH-TTSC--------EEEEEESCHHHH-HHHHHHHHHHTCEEEEEE
T ss_pred CcCEEEEECCCCCcCccccccccCcHHHHHHHHHHc-CCCC--------EEEEEeCCHHHH-HHHHHHHHHCCCcccccc
Confidence 89998754211 111 11478999999999 9988 888775433222 234566777899887764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.1e-11 Score=116.36 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=88.7
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCC-cEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
..+...++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.++++....+ .++.+.+.|+...........++
T Consensus 77 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~ 156 (274)
T 3ajd_A 77 IVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIF 156 (274)
T ss_dssp HHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCC
T ss_pred HHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhcccc
Confidence 4455678899999999999999999987655 899999999999999998865444 37899999885432100002568
Q ss_pred eeEEEEccc------ccC---CCh-------hHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 147 IDIVTMVFV------LSA---VSP-------EKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 147 fD~V~~~~v------l~~---~~~-------~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
||+|++... +.+ ++. .....+++++.++|||||.+++++...
T Consensus 157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 999999632 211 000 245789999999999999999976543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.17 E-value=3e-10 Score=118.11 Aligned_cols=118 Identities=16% Similarity=0.196 Sum_probs=90.6
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCC-cEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
..+...++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.++++....+ .++.+.++|+.... ..+++++
T Consensus 253 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~--~~~~~~~ 330 (450)
T 2yxl_A 253 IVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAP--EIIGEEV 330 (450)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCS--SSSCSSC
T ss_pred HhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcc--hhhccCC
Confidence 3455678899999999999999999998665 799999999999999998865444 47889888886432 1245578
Q ss_pred eeEEEE------cccccCCCh-------hH-------HHHHHHHHHhccCCCeEEEEEecCC
Q 008457 147 IDIVTM------VFVLSAVSP-------EK-------MSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 147 fD~V~~------~~vl~~~~~-------~~-------~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
||+|++ ..++++.+. ++ ...+|.++.++|||||.+++++...
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999997 234443331 11 2678999999999999999987654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=108.75 Aligned_cols=136 Identities=17% Similarity=0.133 Sum_probs=94.1
Q ss_pred CCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh
Q 008457 371 NPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK 448 (564)
Q Consensus 371 ~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~ 448 (564)
...+.++.+|||+|||+|.++..++... ..+|+++|+++.+++.+.+++..+ .++.+...|..+... +
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~------~~v~~~~~d~~~~~~---~- 141 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR------TNIIPVIEDARHPHK---Y- 141 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC------TTEEEECSCTTCGGG---G-
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc------CCeEEEEcccCChhh---h-
Confidence 3445578899999999998888887762 469999999999998888888775 245555555433211 1
Q ss_pred hhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc----CChhH-H---HHHHHHcCCe
Q 008457 449 EENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----VDEPS-M---LSAATQCGFR 520 (564)
Q Consensus 449 ~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~----~~~~~-~---~~~~~~~g~~ 520 (564)
+...++||+|++ |+. .......++..+.++| +|+| .++++...+. ..... | .+.+.+.||+
T Consensus 142 ~~~~~~~D~V~~-~~~-~~~~~~~~~~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 210 (233)
T 2ipx_A 142 RMLIAMVDVIFA-DVA-QPDQTRIVALNAHTFL-RNGG--------HFVISIKANCIDSTASAEAVFASEVKKMQQENMK 210 (233)
T ss_dssp GGGCCCEEEEEE-CCC-CTTHHHHHHHHHHHHE-EEEE--------EEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEE
T ss_pred cccCCcEEEEEE-cCC-CccHHHHHHHHHHHHc-CCCe--------EEEEEEcccccccCCCHHHHHHHHHHHHHHCCCc
Confidence 224568999996 444 3444466788899999 9988 7777665532 11111 1 4667788999
Q ss_pred EEEEcCC
Q 008457 521 LVDKWPS 527 (564)
Q Consensus 521 ~~~~~~~ 527 (564)
+.++...
T Consensus 211 ~~~~~~~ 217 (233)
T 2ipx_A 211 PQEQLTL 217 (233)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9986543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-10 Score=115.19 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC-CeeEEEecCCcccccCCC-CCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-RVSTFVCDLISDDLSRQI-SPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~-~i~~~~~d~~~~~~~~~~-~~~~fD~V~ 151 (564)
.++.+|||+| |+|.++..++..++..+|+++|+|+.+++.|+++....+. +++++++|+... + +. .+++||+|+
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~-l--~~~~~~~fD~Vi 246 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKP-L--PDYALHKFDTFI 246 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSC-C--CTTTSSCBSEEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhh-c--hhhccCCccEEE
Confidence 4678999999 9999999999887667999999999999999998754433 799999998651 2 21 246899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEE-EEE
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYV-LFR 184 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~l-ii~ 184 (564)
++..+++. ....+++++.++|||||.+ ++.
T Consensus 247 ~~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 247 TDPPETLE---AIRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp ECCCSSHH---HHHHHHHHHHHTBCSTTCEEEEE
T ss_pred ECCCCchH---HHHHHHHHHHHHcccCCeEEEEE
Confidence 98765543 3588999999999999954 544
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-11 Score=112.78 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=85.5
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcc--cccCCCCCCce
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISD--DLSRQISPSSI 147 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~--~~~~~~~~~~f 147 (564)
..++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|+++....+ .+++++++|+... .+......++|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 35778999999999999999998765 7899999999999999998865433 5789999987532 11000011689
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
|+|++... ......+++++.++|+|||.+++.+..
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 99999654 235678999999999999999986543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-10 Score=108.61 Aligned_cols=119 Identities=11% Similarity=0.150 Sum_probs=92.4
Q ss_pred CCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 377 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
+.+|||+|||+|.++..++.. +++|+++.+++.++++ .+.+...+..+. ++..++||
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-----------~~~~~~~d~~~~-------~~~~~~fD 104 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-----------GVFVLKGTAENL-------PLKDESFD 104 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-----------TCEEEECBTTBC-------CSCTTCEE
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-----------CCEEEEcccccC-------CCCCCCee
Confidence 789999999999776666543 9999999999999887 134444444321 23456899
Q ss_pred EEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc----------------------CChhHHHHHH
Q 008457 457 VILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------VDEPSMLSAA 514 (564)
Q Consensus 457 ~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~----------------------~~~~~~~~~~ 514 (564)
+|++..++++..+...+++.+.++| +|+| .++++...+. .+...+.+.+
T Consensus 105 ~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 175 (219)
T 1vlm_A 105 FALMVTTICFVDDPERALKEAYRIL-KKGG--------YLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLM 175 (219)
T ss_dssp EEEEESCGGGSSCHHHHHHHHHHHE-EEEE--------EEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHH
T ss_pred EEEEcchHhhccCHHHHHHHHHHHc-CCCc--------EEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHH
Confidence 9999999999999999999999999 9988 7777654321 2445778888
Q ss_pred HHcCCeEEEEcCC
Q 008457 515 TQCGFRLVDKWPS 527 (564)
Q Consensus 515 ~~~g~~~~~~~~~ 527 (564)
.++||+++++...
T Consensus 176 ~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 176 RKAGFEEFKVVQT 188 (219)
T ss_dssp HHTTCEEEEEEEE
T ss_pred HHCCCeEEEEecc
Confidence 9999999988644
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=112.36 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=100.7
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhc-CCCCCCCceEEEEeecCCCcc
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~i~~~~l~w~~~~~ 443 (564)
++.......++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..+ +. .++.+...|+.+.
T Consensus 87 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~----~~v~~~~~d~~~~-- 160 (258)
T 2pwy_A 87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV----ENVRFHLGKLEEA-- 160 (258)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC----CCEEEEESCGGGC--
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC----CCEEEEECchhhc--
Confidence 3333334557889999999999888877776 4 569999999999999999999887 62 4677776665432
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEE
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD 523 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~ 523 (564)
+++.++||+|++ +......+++.+.++| +|+| .+++...... ....+.+.+.+.||...+
T Consensus 161 -----~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L-~~gG--------~l~~~~~~~~-~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 161 -----ELEEAAYDGVAL-----DLMEPWKVLEKAALAL-KPDR--------FLVAYLPNIT-QVLELVRAAEAHPFRLER 220 (258)
T ss_dssp -----CCCTTCEEEEEE-----ESSCGGGGHHHHHHHE-EEEE--------EEEEEESCHH-HHHHHHHHHTTTTEEEEE
T ss_pred -----CCCCCCcCEEEE-----CCcCHHHHHHHHHHhC-CCCC--------EEEEEeCCHH-HHHHHHHHHHHCCCceEE
Confidence 134468999986 3456678999999999 9987 7776655432 224677888889999888
Q ss_pred EcCC
Q 008457 524 KWPS 527 (564)
Q Consensus 524 ~~~~ 527 (564)
+++.
T Consensus 221 ~~~~ 224 (258)
T 2pwy_A 221 VLEV 224 (258)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8743
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-11 Score=118.99 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-----CCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----ETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++.... ..+++++.+|+... + +...++||
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~-l--~~~~~~fD 183 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-L--KNHKNEFD 183 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-H--HHCTTCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH-H--HhcCCCce
Confidence 4668999999999999999998766789999999999999999987532 46789999987542 1 11457899
Q ss_pred EEEEcccccCCChhHH--HHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPEKM--SLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~--~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++...-+.-+.... ..++++++++|+|||++++..
T Consensus 184 ~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 184 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 9999654222221222 689999999999999999864
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.7e-11 Score=117.06 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc---cCCCeeEE--EecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF---TETRVSTF--VCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~---~~~~i~~~--~~d~~~~~~~~~~~~~~fD 148 (564)
.++.+|||+|||+|.++..+++. .+|+|+|+++ |+..++++... .+.++.++ ++|+.. +++++||
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~------l~~~~fD 150 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK------MEPFQAD 150 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG------CCCCCCS
T ss_pred CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh------CCCCCcC
Confidence 57889999999999999998887 5799999999 64443332111 11267888 888754 2467999
Q ss_pred EEEEcccccCCCh---hHH--HHHHHHHHhccCCCe--EEEEEecC
Q 008457 149 IVTMVFVLSAVSP---EKM--SLVLQNIKKVLKPTG--YVLFRDYA 187 (564)
Q Consensus 149 ~V~~~~vl~~~~~---~~~--~~~l~~~~r~LkpgG--~lii~~~~ 187 (564)
+|+|..+ ++.+. +.. ..+|..+.++||||| .+++..+.
T Consensus 151 ~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 151 TVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 9999877 44321 111 137899999999999 99987655
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=113.00 Aligned_cols=125 Identities=17% Similarity=0.196 Sum_probs=92.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..++. ++.+...|..+. . ..++|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g-~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~-------~-~~~~f 185 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLG-YDVTSWDHNENSIAFLNETKEKENL-----NISTALYDINAA-------N-IQENY 185 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCGGGC-------C-CCSCE
T ss_pred CCCcEEEECCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEeccccc-------c-ccCCc
Confidence 67899999999998887777764 5999999999999999999998764 466665555432 1 15689
Q ss_pred cEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------cCChhHHHHHHHHcCCeE
Q 008457 456 EVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------QVDEPSMLSAATQCGFRL 521 (564)
Q Consensus 456 D~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r------------~~~~~~~~~~~~~~g~~~ 521 (564)
|+|+++.++++. .....+++.+.++| +|+| .+++..... ......+.+.+. +|++
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 254 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHT-NVGG--------YNLIVAAMSTDDVPCPLPFSFTFAENELKEYYK--DWEF 254 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTE-EEEE--------EEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTT--TSEE
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhc-CCCc--------EEEEEEecCCCCCCCCCCccccCCHHHHHHHhc--CCEE
Confidence 999999998864 56779999999999 9988 655544322 122334445443 4888
Q ss_pred EEEc
Q 008457 522 VDKW 525 (564)
Q Consensus 522 ~~~~ 525 (564)
.+..
T Consensus 255 ~~~~ 258 (286)
T 3m70_A 255 LEYN 258 (286)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=112.70 Aligned_cols=134 Identities=14% Similarity=0.181 Sum_probs=99.4
Q ss_pred HhcCCCCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccch
Q 008457 368 LARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE 445 (564)
Q Consensus 368 l~~~~~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~ 445 (564)
+.....+.++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..+++. .++.+...|+.+.
T Consensus 104 i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~---- 176 (277)
T 1o54_A 104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI---ERVTIKVRDISEG---- 176 (277)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG---GGEEEECCCGGGC----
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC---CCEEEEECCHHHc----
Confidence 333334557889999999999888888776 4 569999999999999999999887653 3566655544321
Q ss_pred hhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 446 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 446 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
++.++||+|++ +......+++.+.++| +|+| .+++...... ....+.+.+.+.||...+++
T Consensus 177 ----~~~~~~D~V~~-----~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~-~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 177 ----FDEKDVDALFL-----DVPDPWNYIDKCWEAL-KGGG--------RFATVCPTTN-QVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp ----CSCCSEEEEEE-----CCSCGGGTHHHHHHHE-EEEE--------EEEEEESSHH-HHHHHHHHHHHSSEEEEEEE
T ss_pred ----ccCCccCEEEE-----CCcCHHHHHHHHHHHc-CCCC--------EEEEEeCCHH-HHHHHHHHHHHCCCceeEEE
Confidence 23468999986 3345668899999999 9987 7776654332 12367778888999999888
Q ss_pred CC
Q 008457 526 PS 527 (564)
Q Consensus 526 ~~ 527 (564)
+.
T Consensus 238 ~~ 239 (277)
T 1o54_A 238 ES 239 (277)
T ss_dssp CC
T ss_pred EE
Confidence 65
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.2e-10 Score=115.48 Aligned_cols=133 Identities=12% Similarity=0.068 Sum_probs=103.0
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++|+..+++. +++.+...|+.+. ++
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--------~~ 246 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA---DRVTVAEGDFFKP--------LP 246 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT---TTEEEEECCTTSC--------CS
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCC---CceEEEeCCCCCc--------CC
Confidence 34567899999999998888877765 459999999 99999999999887763 4688887776532 12
Q ss_pred CCCccEEEEeceeeCCCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEe--e--c---------------------c
Q 008457 452 NEGFEVILGTDVSYIPEAI--LPLFATAKELTASSNKSLREDQQPAFILCHI--F--R---------------------Q 504 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~--~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~--~--r---------------------~ 504 (564)
..||+|++..++++.... ..+++.+.++| +|+| .+++... . . .
T Consensus 247 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L-~pgG--------~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (374)
T 1qzz_A 247 -VTADVVLLSFVLLNWSDEDALTILRGCVRAL-EPGG--------RLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRV 316 (374)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEECCH-------HHHHHHHHHHHHHHHSCCC
T ss_pred -CCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCCc--------EEEEEechhhcCCCCCcchhhhcchHHHHhCCCcC
Confidence 259999999999876655 48999999999 9987 7776544 1 1 1
Q ss_pred CChhHHHHHHHHcCCeEEEEcCC
Q 008457 505 VDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 505 ~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.+...+.+.+.++||+++++...
T Consensus 317 ~~~~~~~~ll~~aGf~~~~~~~~ 339 (374)
T 1qzz_A 317 RTRDEVVDLAGSAGLALASERTS 339 (374)
T ss_dssp CCHHHHHHHHHTTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHCCCceEEEEEC
Confidence 24456778888999999998755
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=113.54 Aligned_cols=137 Identities=16% Similarity=0.080 Sum_probs=87.7
Q ss_pred echhHHHHHHHHhcCC-CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCC--ceEE
Q 008457 357 LWESAHLMAAVLARNP-TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLA--KLIT 433 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~-~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~--~i~~ 433 (564)
-|-.+..+..++.... ...++.+|||||||+|.....++..+..+|+++|+|+.+++.|++.....+...... .+.+
T Consensus 28 n~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f 107 (302)
T 2vdw_A 28 NYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDY 107 (302)
T ss_dssp HHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEE
T ss_pred HHHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccch
Confidence 4555555555543211 112578999999999965555555566799999999999999998876543210000 1333
Q ss_pred EEeecCCCccchhhh-hhcCCCccEEEEeceee---CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 434 KRLEWGNRDHIEAIK-EENNEGFEVILGTDVSY---IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~-~~~~~~fD~Ii~~d~~y---~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
...+...+.....+. .+++++||+|++..++. +.+....+++.+.++| +|+| .++++...
T Consensus 108 ~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~L-kpGG--------~~i~~~~~ 171 (302)
T 2vdw_A 108 IQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELT-ASGG--------KVLITTMD 171 (302)
T ss_dssp EECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHE-EEEE--------EEEEEEEC
T ss_pred hhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHc-CCCC--------EEEEEeCC
Confidence 333332111001221 23567999999888763 3456789999999999 9988 77777654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=110.92 Aligned_cols=126 Identities=12% Similarity=0.126 Sum_probs=91.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
+|.+|||+|||+|.++..++..++++|+++|+||.+++.+++|+..|++. +++.+...|-.+. ...+.|
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~---~~v~~~~~D~~~~--------~~~~~~ 193 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE---DRMSAYNMDNRDF--------PGENIA 193 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT---TTEEEECSCTTTC--------CCCSCE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEeCcHHHh--------ccccCC
Confidence 68899999999999999888888889999999999999999999999985 5677766554321 134689
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE-Eeec-cC---ChhHHHHHHHHcCCeEEEEc
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILC-HIFR-QV---DEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~-~~~r-~~---~~~~~~~~~~~~g~~~~~~~ 525 (564)
|.|++..+.+. ..++..+.++| +++| .+.+- .... .. ....+.+.+.+.|++++.+.
T Consensus 194 D~Vi~~~p~~~----~~~l~~a~~~l-k~gG--------~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~ 255 (278)
T 3k6r_A 194 DRILMGYVVRT----HEFIPKALSIA-KDGA--------IIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN 255 (278)
T ss_dssp EEEEECCCSSG----GGGHHHHHHHE-EEEE--------EEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEECCCCcH----HHHHHHHHHHc-CCCC--------EEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEE
Confidence 99987655433 35667777899 8877 44321 1111 11 11245566677899887553
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.5e-11 Score=111.53 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=86.0
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccc--cc-CCCCCC
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDD--LS-RQISPS 145 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~--~~-~~~~~~ 145 (564)
...++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|+++....+ .+++++++|+.... +. ...+.+
T Consensus 67 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 67 KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG 146 (237)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred HhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence 335778999999999999999999866 7899999999999999998865433 46899999875421 10 001257
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+||+|++... ......+++++.++|+|||++++.+.
T Consensus 147 ~fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 147 SYDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp CEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CcCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 8999998532 24667899999999999999988654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.2e-10 Score=111.33 Aligned_cols=133 Identities=12% Similarity=0.042 Sum_probs=104.4
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
......+|||+|||+|.++..++... ..+++++|+ +.+++.+++++...++. +++.+...|..+. ++
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--------~p 233 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLS---GRAQVVVGSFFDP--------LP 233 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT---TTEEEEECCTTSC--------CC
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcC---cCeEEecCCCCCC--------CC
Confidence 33456899999999998887777654 458999999 99999999999887653 6788888776521 22
Q ss_pred CCCccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------cCChhH
Q 008457 452 NEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------QVDEPS 509 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--------------------~~~~~~ 509 (564)
. +||+|++..++++..+ ...+++.+.++| +|+| .+++..... ..+..+
T Consensus 234 ~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L-~pgG--------~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 303 (332)
T 3i53_A 234 A-GAGGYVLSAVLHDWDDLSAVAILRRCAEAA-GSGG--------VVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAE 303 (332)
T ss_dssp C-SCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTTC--------EEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHH
T ss_pred C-CCcEEEEehhhccCCHHHHHHHHHHHHHhc-CCCC--------EEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHH
Confidence 3 8999999999988776 589999999999 9988 777654321 123456
Q ss_pred HHHHHHHcCCeEEEEcCC
Q 008457 510 MLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 510 ~~~~~~~~g~~~~~~~~~ 527 (564)
+.+.++++||++++++..
T Consensus 304 ~~~ll~~aGf~~~~~~~~ 321 (332)
T 3i53_A 304 LGELAAQAGLAVRAAHPI 321 (332)
T ss_dssp HHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEEC
Confidence 778889999999999854
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-10 Score=111.66 Aligned_cols=133 Identities=11% Similarity=0.162 Sum_probs=93.6
Q ss_pred CCCCeEEEeCCcccHHHHHH----Hhc-CCCEE--EEEcCChhHHHHHHHHHHhc-CCCCCCCceEEEEeecCCCccchh
Q 008457 375 VAGKKVLELGCGCGGICSMV----AAG-SADLV--VATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~----~~~-~~~~v--~~tD~~~~~l~~~~~n~~~n-~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
.++.+|||||||+|.++..+ +.. ....| +++|.|++|++.+++++... ++ ..+.+ .|...+. +.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~----~~v~~---~~~~~~~-~~ 122 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL----ENVKF---AWHKETS-SE 122 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC----TTEEE---EEECSCH-HH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC----CcceE---EEEecch-hh
Confidence 35679999999999655322 222 23444 99999999999999987653 22 23433 3433221 12
Q ss_pred hh-----hhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------------
Q 008457 447 IK-----EENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------------ 503 (564)
Q Consensus 447 ~~-----~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r------------------ 503 (564)
+. ++.+++||+|+++.++++..+...+++.+.++| +|+| .++++....
T Consensus 123 ~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~ 193 (292)
T 2aot_A 123 YQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLL-GTNA--------KMLIIVVSGSSGWDKLWKKYGSRFPQD 193 (292)
T ss_dssp HHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTE-EEEE--------EEEEEEECTTSHHHHHHHHHGGGSCCC
T ss_pred hhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHc-CCCc--------EEEEEEecCCccHHHHHHHHHHhccCC
Confidence 21 134679999999999999999999999999999 9988 777654321
Q ss_pred ----cCChhHHHHHHHHcCCeEEEE
Q 008457 504 ----QVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 504 ----~~~~~~~~~~~~~~g~~~~~~ 524 (564)
..+...+.+.+.++||++...
T Consensus 194 ~~~~~~~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 194 DLCQYITSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp TTCCCCCHHHHHHHHHHHTCCEEEE
T ss_pred CcccCCCHHHHHHHHHHCCCceEEE
Confidence 122346778888999998874
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-10 Score=109.87 Aligned_cols=147 Identities=10% Similarity=-0.038 Sum_probs=94.6
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHh----------cCCC---CCCC
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTA----------NLKP---PFLA 429 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~----------n~~~---~~~~ 429 (564)
.+.+++.......++.+|||+|||+|..+..++..+ .+|+++|+|+.+++.++++... ++.. ....
T Consensus 55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (252)
T 2gb4_A 55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRG-HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSG 133 (252)
T ss_dssp HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTT-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCC
Confidence 345555432222367899999999998887777764 4899999999999999765431 0000 0013
Q ss_pred ceEEEEeecCCCccchhhhhhc-CCCccEEEEeceeeC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEE-EEEeec--
Q 008457 430 KLITKRLEWGNRDHIEAIKEEN-NEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFI-LCHIFR-- 503 (564)
Q Consensus 430 ~i~~~~l~w~~~~~~~~~~~~~-~~~fD~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~-~~~~~r-- 503 (564)
++.+...|..+. +.. .++||+|++..++.. ......+++.+.++| +|+| .++ ++....
T Consensus 134 ~i~~~~~D~~~l-------~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~L-kpGG--------~l~l~~~~~~~~ 197 (252)
T 2gb4_A 134 SISLYCCSIFDL-------PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLL-RKEF--------QYLVAVLSYDPT 197 (252)
T ss_dssp SEEEEESCTTTG-------GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTE-EEEE--------EEEEEEEECCTT
T ss_pred ceEEEECccccC-------CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHc-CCCe--------EEEEEEEecCCc
Confidence 566665554322 112 268999998766654 345678999999999 9988 765 333211
Q ss_pred -------cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 -------QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 -------~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+..++.+.+.. +|+++.+...
T Consensus 198 ~~~g~~~~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 198 KHAGPPFYVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp SCCCSSCCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred cCCCCCCCCCHHHHHHHhhC-CeEEEEEecc
Confidence 1233456666654 6998887543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5e-11 Score=117.92 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc------cCCCeeEEEecCCcccccCCCCCCce
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF------TETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~------~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++... ...+++++++|+... + +..+++|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~-l--~~~~~~f 152 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-L--ERTEERY 152 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-H--HHCCCCE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH-H--HhcCCCc
Confidence 466899999999999999999876678999999999999999987642 146899999998542 1 1136789
Q ss_pred eEEEEcccccC---CChhH--HHHHHHHHHhccCCCeEEEEEe
Q 008457 148 DIVTMVFVLSA---VSPEK--MSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 148 D~V~~~~vl~~---~~~~~--~~~~l~~~~r~LkpgG~lii~~ 185 (564)
|+|++....++ -+... ...++++++++|+|||.+++..
T Consensus 153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99999766554 21112 3689999999999999999853
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.2e-11 Score=117.67 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++... ...+++++.+|+... + +..+++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~-l--~~~~~~fD 170 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-M--KQNQDAFD 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-H--HTCSSCEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH-H--hhCCCCce
Confidence 467899999999999999999876678999999999999999988643 246899999997532 1 12457899
Q ss_pred EEEEcccccCCChh--HHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPE--KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~--~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++....+..+.. ....++++++++|+|||++++..
T Consensus 171 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 171 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 99996543322211 23568999999999999999864
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-11 Score=116.39 Aligned_cols=151 Identities=14% Similarity=0.087 Sum_probs=93.2
Q ss_pred CCChhHHHHHHHHHhHhHHHHHHhhcccc-----------------ccccchh-HHHHhhhccCCCCCeEEEEcCCcccc
Q 008457 28 GVSPFWRDKYEREAKKYWDLFYKRHQDRF-----------------FKDRHYL-DKEWGRYFSGAGRKDVLEVGCGAGNT 89 (564)
Q Consensus 28 ~~~~~~~~~y~~~a~~ywd~~~~~~~~~~-----------------~~~~~~~-~~~~~~~l~~~~~~~VLDiGcG~G~~ 89 (564)
...+.|+...+...++||+.|........ +..+..+ ...+.+.....++.+|||+|||+|.+
T Consensus 17 ~~~~~~k~~l~~~~~~~f~~y~~~~i~e~~~~~a~~~l~~g~~~~~~~sR~a~KL~~i~~~~~~~~g~~VLDlGcG~G~~ 96 (305)
T 2p41_A 17 TLGEKWKSRLNALGKSEFQIYKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGW 96 (305)
T ss_dssp SHHHHHHHHHHHSCHHHHHHHHHTTCEEEECHHHHHHHHTTCCSSCCSSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHH
T ss_pred cchHHHHHHHhHhhHHHHHHhcccCccccCHHHHHHHHHcCCCcCCccccHHHHHHHHHHcCCCCCCCEEEEEcCCCCHH
Confidence 34566777778888889998643321110 1111111 11111111225688999999999999
Q ss_pred HHHHHHhCCCcEEEEEeC----ChHHHHHHHhcccccCCCeeEEEe-cCCcccccCCCCCCceeEEEEccccc--CCChh
Q 008457 90 IFPLIAAYPDVFVYACDF----SPRAVNLVMTHKDFTETRVSTFVC-DLISDDLSRQISPSSIDIVTMVFVLS--AVSPE 162 (564)
Q Consensus 90 ~~~l~~~~~~~~v~~iD~----s~~~l~~a~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~~fD~V~~~~vl~--~~~~~ 162 (564)
+..+++. .+|+|+|+ ++.+++.+... .....++.+.++ |+.. ++.++||+|+|..+++ +...+
T Consensus 97 s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~D~~~------l~~~~fD~V~sd~~~~~g~~~~d 166 (305)
T 2p41_A 97 SYYCGGL---KNVREVKGLTKGGPGHEEPIPMS-TYGWNLVRLQSGVDVFF------IPPERCDTLLCDIGESSPNPTVE 166 (305)
T ss_dssp HHHHHTS---TTEEEEEEECCCSTTSCCCCCCC-STTGGGEEEECSCCTTT------SCCCCCSEEEECCCCCCSSHHHH
T ss_pred HHHHHhc---CCEEEEeccccCchhHHHHHHhh-hcCCCCeEEEecccccc------CCcCCCCEEEECCccccCcchhh
Confidence 9999887 47999999 56443221111 001246788877 7653 2456899999977654 11011
Q ss_pred HH--HHHHHHHHhccCCCeEEEEEecCC
Q 008457 163 KM--SLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 163 ~~--~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
.. ..+|..+.++|||||.|++..+..
T Consensus 167 ~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 167 AGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 11 157899999999999999876554
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-10 Score=113.89 Aligned_cols=135 Identities=17% Similarity=0.085 Sum_probs=95.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh--cC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~--~~ 452 (564)
.++.+|||+|||+|.++..++..++.+|+++|+|+.+++.+++|+..|++.. .++.+...|..+ .+..+ ..
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~--~~v~~~~~D~~~-----~l~~~~~~~ 283 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDM--ANHQLVVMDVFD-----YFKYARRHH 283 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCC--TTEEEEESCHHH-----HHHHHHHTT
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc--cceEEEECCHHH-----HHHHHHHhC
Confidence 4778999999999988888887777799999999999999999999998741 156666554321 11111 24
Q ss_pred CCccEEEEeceeeC-----C----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHH----HHcCC
Q 008457 453 EGFEVILGTDVSYI-----P----EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGF 519 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~-----~----~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~----~~~g~ 519 (564)
.+||+|++....+. . ..+..+++.+.++| +|+| .++++........+.|.+.+ ...|.
T Consensus 284 ~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L-~pgG--------~l~~~~~~~~~~~~~~~~~i~~~~~~~g~ 354 (385)
T 2b78_A 284 LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEIL-SENG--------LIIASTNAANMTVSQFKKQIEKGFGKQKH 354 (385)
T ss_dssp CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTE-EEEE--------EEEEEECCTTSCHHHHHHHHHHHHTTCCC
T ss_pred CCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhc-CCCc--------EEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 58999986433321 1 13445777788999 9988 88888887777665555444 45677
Q ss_pred eEEEEc
Q 008457 520 RLVDKW 525 (564)
Q Consensus 520 ~~~~~~ 525 (564)
++.+..
T Consensus 355 ~~~~~~ 360 (385)
T 2b78_A 355 TYLDLQ 360 (385)
T ss_dssp EEEEEE
T ss_pred cEEEeC
Confidence 744443
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=109.34 Aligned_cols=104 Identities=10% Similarity=0.062 Sum_probs=76.9
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
.+.+++.... .++.+|||+|||+|.++..++..+. +|+++|+++.+++.++++. .++.+...|..+.
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~- 95 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL---------PDATLHQGDMRDF- 95 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC---------TTCEEEECCTTTC-
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC---------CCCEEEECCHHHc-
Confidence 4555555433 3678999999999988877776654 8999999999999998873 2355555555432
Q ss_pred cchhhhhhcCCCccEEEE-eceeeCC---CChHHHHHHHHHHhhccCCC
Q 008457 443 HIEAIKEENNEGFEVILG-TDVSYIP---EAILPLFATAKELTASSNKS 487 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~-~d~~y~~---~~~~~l~~~~~~ll~~~~g~ 487 (564)
+. +++||+|++ .+++.+. .....+++.+.++| +|+|.
T Consensus 96 ------~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~ 136 (239)
T 3bxo_A 96 ------RL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHL-EPGGV 136 (239)
T ss_dssp ------CC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTE-EEEEE
T ss_pred ------cc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhc-CCCeE
Confidence 12 468999994 5576665 56788999999999 99883
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=5e-11 Score=116.05 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----------cCCCeeEEEecCCcccccCCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----------TETRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----------~~~~i~~~~~d~~~~~~~~~~ 142 (564)
.++.+|||||||+|.++..+++. +..+|+++|+++.+++.|+++... ...+++++.+|+... +. .
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~-l~--~ 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF-IK--N 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-HH--H
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHH-hc--c
Confidence 46789999999999999999888 678999999999999999987611 235789999987532 11 1
Q ss_pred CCCceeEEEEcccccCCChhH--HHHHHHHHHhccCCCeEEEEEe
Q 008457 143 SPSSIDIVTMVFVLSAVSPEK--MSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~--~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+++||+|++....+..+... ...++++++++|+|||++++..
T Consensus 150 -~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 150 -NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp -CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 57899999966543222122 2678999999999999999863
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4e-10 Score=105.29 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=88.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh-hhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~-~~~~~ 453 (564)
.+.+|||||||+|.++..++... ...|+++|+++.+++.+++|+..+++ .++.+...|- .+.+. .++++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l----~nv~~~~~Da-----~~~l~~~~~~~ 104 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL----SNLRVMCHDA-----VEVLHKMIPDN 104 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC----SSEEEECSCH-----HHHHHHHSCTT
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC----CcEEEEECCH-----HHHHHHHcCCC
Confidence 56799999999998887777665 45899999999999999999998876 3465543332 11111 14678
Q ss_pred CccEEEEe--ceeeCCCCh------HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHH-cCCeE
Q 008457 454 GFEVILGT--DVSYIPEAI------LPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ-CGFRL 521 (564)
Q Consensus 454 ~fD~Ii~~--d~~y~~~~~------~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~g~~~ 521 (564)
+||.|++. |........ +.+++.+.++| +|+| .++++........ .+.+.+.+ .+|+.
T Consensus 105 ~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~L-kpGG--------~l~i~td~~~~~~-~~~~~~~~~~~~~~ 171 (218)
T 3dxy_A 105 SLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKL-QLGG--------VFHMATDWEPYAE-HMLEVMSSIDGYKN 171 (218)
T ss_dssp CEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHE-EEEE--------EEEEEESCHHHHH-HHHHHHHTSTTEEE
T ss_pred ChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHc-CCCc--------EEEEEeCCHHHHH-HHHHHHHhCCCccc
Confidence 99999977 544333222 36999999999 9988 8888765544322 34444443 34544
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-10 Score=105.63 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=78.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..+ +..+|+++|+++.+++.++++. .++.+...|..+. ++++++|
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-------~~~~~~f 96 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---------PEATWVRAWGEAL-------PFPGESF 96 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC---------TTSEEECCCTTSC-------CSCSSCE
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcccccC-------CCCCCcE
Confidence 7889999999999666554 3348999999999999999885 1234444444321 2345789
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
|+|++..++++..+...+++.+.++| +|+| .++++...
T Consensus 97 D~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG--------~l~i~~~~ 134 (211)
T 2gs9_A 97 DVVLLFTTLEFVEDVERVLLEARRVL-RPGG--------ALVVGVLE 134 (211)
T ss_dssp EEEEEESCTTTCSCHHHHHHHHHHHE-EEEE--------EEEEEEEC
T ss_pred EEEEEcChhhhcCCHHHHHHHHHHHc-CCCC--------EEEEEecC
Confidence 99999999999999999999999999 9988 77777654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=116.08 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=81.6
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
...++.+|||+|||+|.++..++..+..+|+++|++ .+++.+++++..|+.. +++.+...|..+. +++.
T Consensus 35 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~-------~~~~ 103 (328)
T 1g6q_1 35 DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFS---DKITLLRGKLEDV-------HLPF 103 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCT---TTEEEEESCTTTS-------CCSS
T ss_pred hhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCC---CCEEEEECchhhc-------cCCC
Confidence 345788999999999988888777777799999999 5999999999998874 5677776665432 2344
Q ss_pred CCccEEEEece---eeCCCChHHHHHHHHHHhhccCC
Q 008457 453 EGFEVILGTDV---SYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 453 ~~fD~Ii~~d~---~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
++||+|++..+ +.+...++.+++.+.++| +|+|
T Consensus 104 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~L-kpgG 139 (328)
T 1g6q_1 104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYL-VEGG 139 (328)
T ss_dssp SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHE-EEEE
T ss_pred CcccEEEEeCchhhcccHHHHHHHHHHHHhhc-CCCe
Confidence 68999998744 345677889999999999 9988
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.4e-10 Score=112.36 Aligned_cols=138 Identities=10% Similarity=0.054 Sum_probs=106.3
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccch
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE 445 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~ 445 (564)
.+.......+..+|||+|||+|.++..++... ..+++++|+ +.+++.+++++...++. +++.+...|..+.
T Consensus 193 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~---~~v~~~~~d~~~~---- 264 (369)
T 3gwz_A 193 QVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLA---DRCEILPGDFFET---- 264 (369)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT---TTEEEEECCTTTC----
T ss_pred HHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcC---CceEEeccCCCCC----
Confidence 33333344567899999999998888777765 459999999 99999999999887754 6788888877521
Q ss_pred hhhhhcCCCccEEEEeceeeCCCChH--HHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-------------------
Q 008457 446 AIKEENNEGFEVILGTDVSYIPEAIL--PLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------------- 504 (564)
Q Consensus 446 ~~~~~~~~~fD~Ii~~d~~y~~~~~~--~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~------------------- 504 (564)
++. .||+|++..++++..+.. .+++.+.++| +|+| .+++......
T Consensus 265 ----~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L-~pgG--------~l~i~e~~~~~~~~~~~~~~d~~~~~~~~ 330 (369)
T 3gwz_A 265 ----IPD-GADVYLIKHVLHDWDDDDVVRILRRIATAM-KPDS--------RLLVIDNLIDERPAASTLFVDLLLLVLVG 330 (369)
T ss_dssp ----CCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTC-CTTC--------EEEEEEEBCCSSCCHHHHHHHHHHHHHHS
T ss_pred ----CCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHc-CCCC--------EEEEEEeccCCCCCCchhHhhHHHHhhcC
Confidence 233 799999999998877655 7999999999 9988 7777544321
Q ss_pred ---CChhHHHHHHHHcCCeEEEEcC
Q 008457 505 ---VDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 505 ---~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
.+..++.+.++++||++++++.
T Consensus 331 g~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 331 GAERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp CCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred CccCCHHHHHHHHHHCCCeEEEEEE
Confidence 2344677888899999999974
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.5e-10 Score=113.81 Aligned_cols=133 Identities=20% Similarity=0.150 Sum_probs=97.0
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCC-CCCCCceEEEEeecCCCccchhhhhh--cC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLK-PPFLAKLITKRLEWGNRDHIEAIKEE--NN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~-~~~~~~i~~~~l~w~~~~~~~~~~~~--~~ 452 (564)
++.+|||+|||+|+++..++..++.+|+++|+++.+++.+++|+..|++ . .++.+...|..+ .+..+ ..
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~---~~v~~~~~D~~~-----~~~~~~~~~ 291 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL---SKAEFVRDDVFK-----LLRTYRDRG 291 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG---GGEEEEESCHHH-----HHHHHHHTT
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc---cceEEEECCHHH-----HHHHHHhcC
Confidence 7789999999999999888887777999999999999999999999986 3 256666554321 11111 14
Q ss_pred CCccEEEEeceeeCC---------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHH----HHHHHcCC
Q 008457 453 EGFEVILGTDVSYIP---------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML----SAATQCGF 519 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~---------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~~g~ 519 (564)
.+||+|++....+.. .....++..+.++| +|+| .++++........+.|. +.+.+.|.
T Consensus 292 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~i~~~~~~~g~ 362 (396)
T 3c0k_A 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLL-NEGG--------ILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_dssp CCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTE-EEEE--------EEEEEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhc-CCCc--------EEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 689999864332221 56778899999999 9988 88888777766644333 35556786
Q ss_pred eEEEEc
Q 008457 520 RLVDKW 525 (564)
Q Consensus 520 ~~~~~~ 525 (564)
.+..+.
T Consensus 363 ~~~~i~ 368 (396)
T 3c0k_A 363 DVQFIE 368 (396)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 666554
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-10 Score=107.15 Aligned_cols=117 Identities=14% Similarity=0.022 Sum_probs=83.0
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+.+.....+.++.+|||||||+|.++..++.. +.+|+++|+|+.|++.+++|+..+. ...+|.+.+..
T Consensus 34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~~----------v~~~~~~~~~~ 102 (261)
T 3iv6_A 34 RENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADRC----------VTIDLLDITAE 102 (261)
T ss_dssp HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSSC----------CEEEECCTTSC
T ss_pred HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcc----------ceeeeeecccc
Confidence 344555555668899999999999887777765 4689999999999999999976541 12334332110
Q ss_pred hhhhhhcCCCccEEEEeceeeC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 445 EAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
......++||+|+++.++.+ .+....+++.+.++| |+| .++++.....
T Consensus 103 --~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL--PGG--------~l~lS~~~g~ 152 (261)
T 3iv6_A 103 --IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV--GSG--------TVRASVKLGF 152 (261)
T ss_dssp --CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH--TTS--------EEEEEEEBSC
T ss_pred --cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC--cCc--------EEEEEeccCc
Confidence 00112468999999888765 345677889999888 777 8888877643
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.3e-10 Score=113.47 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=105.7
Q ss_pred EEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcC
Q 008457 328 IEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDG 407 (564)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~ 407 (564)
..+...|..+.+... ....+|.. | .......++.... .++.+|||+|||+|+++..++..++. |+++|+
T Consensus 176 ~~v~E~g~~f~vd~~------~~~~tG~f-~-dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDi 244 (393)
T 4dmg_A 176 LEVEEDGLRFPIPLA------LAQKTGYY-L-DQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARKGAY-ALAVDK 244 (393)
T ss_dssp EEEEETTEEEEEETT------TCCTTSSC-G-GGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEES
T ss_pred EEEEECCEEEEEech------hccccCcC-C-CHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHcCCe-EEEEEC
Confidence 445556666666421 22345532 2 2222234444322 24899999999999888888877655 999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC---------CChHHHHHHHH
Q 008457 408 DSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---------EAILPLFATAK 478 (564)
Q Consensus 408 ~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---------~~~~~l~~~~~ 478 (564)
|+.+++.+++|+..|++. .+ +... +..+.+..+ .+.||+|++....|.. ..+..+++.+.
T Consensus 245 s~~al~~a~~n~~~ng~~---~~--~~~~-----D~~~~l~~~-~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~ 313 (393)
T 4dmg_A 245 DLEALGVLDQAALRLGLR---VD--IRHG-----EALPTLRGL-EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREAL 313 (393)
T ss_dssp CHHHHHHHHHHHHHHTCC---CE--EEES-----CHHHHHHTC-CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC---Cc--EEEc-----cHHHHHHHh-cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 22 2221 222222222 3359999864333332 24568888899
Q ss_pred HHhhccCCCCCCCCCcEEEEEEeeccCChhHHH----HHHHHcCCeEEEEc
Q 008457 479 ELTASSNKSLREDQQPAFILCHIFRQVDEPSML----SAATQCGFRLVDKW 525 (564)
Q Consensus 479 ~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~~g~~~~~~~ 525 (564)
++| +|+| .++++........+.|. +.+.+.|..+..+.
T Consensus 314 ~~L-kpGG--------~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~~ 355 (393)
T 4dmg_A 314 RLL-AEEG--------FLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVHR 355 (393)
T ss_dssp HTE-EEEE--------EEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred Hhc-CCCC--------EEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 999 9988 77777666666654444 34445676666554
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-10 Score=113.17 Aligned_cols=132 Identities=13% Similarity=0.072 Sum_probs=102.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.++.+|||+|||+|.++..++... ..+++++|++ .+++.+++++..+++. +++.+...|+.+. +. +.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-------~~-~~ 231 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVA---SRYHTIAGSAFEV-------DY-GN 231 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCG---GGEEEEESCTTTS-------CC-CS
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCC---cceEEEecccccC-------CC-CC
Confidence 467899999999998887777764 4599999998 9999999999887653 4688887777543 11 23
Q ss_pred CccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-------------------------CC
Q 008457 454 GFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------------VD 506 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-------------------------~~ 506 (564)
.||+|++..++++. .....+++.+.++| +|+| .+++...... .+
T Consensus 232 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L-~pgG--------~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 302 (335)
T 2r3s_A 232 DYDLVLLPNFLHHFDVATCEQLLRKIKTAL-AVEG--------KVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYT 302 (335)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCC
T ss_pred CCcEEEEcchhccCCHHHHHHHHHHHHHhC-CCCc--------EEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCC
Confidence 59999999999887 45679999999999 9987 6666543321 12
Q ss_pred hhHHHHHHHHcCCeEEEEcCC
Q 008457 507 EPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 507 ~~~~~~~~~~~g~~~~~~~~~ 527 (564)
...+.+.++++||++.++...
T Consensus 303 ~~~~~~ll~~aGf~~~~~~~~ 323 (335)
T 2r3s_A 303 FAEYESMFSNAGFSHSQLHSL 323 (335)
T ss_dssp HHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHHHCCCCeeeEEEC
Confidence 456778888999999998754
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.7e-11 Score=108.04 Aligned_cols=102 Identities=12% Similarity=0.180 Sum_probs=84.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||.|.++..+. +..+|+|+|+++.+++.+++.....+.+..+..+|..... +.++||+|++.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~-----~~~~~DvvLll 175 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP-----PAEAGDLALIF 175 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC-----CCCBCSEEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC-----CCCCcchHHHH
Confidence 568899999999999998776 6889999999999999999987655677889999986532 45699999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
-++||+........+ ++.+.|+++|+++-.
T Consensus 176 k~lh~LE~q~~~~~~-~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 176 KLLPLLEREQAGSAM-ALLQSLNTPRMAVSF 205 (253)
T ss_dssp SCHHHHHHHSTTHHH-HHHHHCBCSEEEEEE
T ss_pred HHHHHhhhhchhhHH-HHHHHhcCCCEEEEc
Confidence 999998544444444 888899999887754
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.1e-12 Score=116.18 Aligned_cols=144 Identities=16% Similarity=0.068 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCC-CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 361 AHLMAAVLARNP-TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 361 ~~~l~~~l~~~~-~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
+..+.+++.... ...++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..++. ++.+...|+
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~d~ 88 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-----VVDWAAADG 88 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCHHHH
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-----ceEEEEcch
Confidence 445555555432 22578899999999998888887765 34999999999999999999887653 233332222
Q ss_pred CCCccchhhhh--hcCCCccEEEEeceeeCCCCh--------------------------HHHHHHHHHHhhccCCCCCC
Q 008457 439 GNRDHIEAIKE--ENNEGFEVILGTDVSYIPEAI--------------------------LPLFATAKELTASSNKSLRE 490 (564)
Q Consensus 439 ~~~~~~~~~~~--~~~~~fD~Ii~~d~~y~~~~~--------------------------~~l~~~~~~ll~~~~g~~~~ 490 (564)
.+ .+.. ...++||+|+++...+..... ..+++.+.++| +|+|
T Consensus 89 ~~-----~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG---- 158 (215)
T 4dzr_A 89 IE-----WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVL-ARGR---- 158 (215)
T ss_dssp HH-----HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGB-CSSS----
T ss_pred Hh-----hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHh-cCCC----
Confidence 21 1111 123799999986554332221 77888889999 9988
Q ss_pred CCCcE-EEEEEeeccCChhHHHHHHH--HcCCeEEEEc
Q 008457 491 DQQPA-FILCHIFRQVDEPSMLSAAT--QCGFRLVDKW 525 (564)
Q Consensus 491 ~~~~~-~~~~~~~r~~~~~~~~~~~~--~~g~~~~~~~ 525 (564)
. +++... ......+.+.+. +.||...+++
T Consensus 159 ----~l~~~~~~--~~~~~~~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 159 ----AGVFLEVG--HNQADEVARLFAPWRERGFRVRKV 190 (215)
T ss_dssp ----EEEEEECT--TSCHHHHHHHTGGGGGGTEECCEE
T ss_pred ----eEEEEEEC--CccHHHHHHHHHHhhcCCceEEEE
Confidence 7 444433 223346777778 8899777665
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.6e-10 Score=115.46 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=91.5
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+...++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++....+.++.+.++|+..... .+++++||
T Consensus 240 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~--~~~~~~fD 317 (429)
T 1sqg_A 240 TWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ--WCGEQQFD 317 (429)
T ss_dssp HHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH--HHTTCCEE
T ss_pred HHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchh--hcccCCCC
Confidence 3455678899999999999999999999777899999999999999998876555568888998865321 13457899
Q ss_pred EEEEc------ccccCCCh-------hH-------HHHHHHHHHhccCCCeEEEEEecCC
Q 008457 149 IVTMV------FVLSAVSP-------EK-------MSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 149 ~V~~~------~vl~~~~~-------~~-------~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
+|++. .++++.+. ++ ...++.++.++|||||.+++++...
T Consensus 318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99972 23444331 11 2578999999999999999986543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-10 Score=109.27 Aligned_cols=128 Identities=11% Similarity=0.054 Sum_probs=90.0
Q ss_pred CCCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 372 PTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 372 ~~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
..+.++.+|||+|||+|+++.+++++ .+.+|+++|+++++++.+++|+...+. .++.+..-|-. .+
T Consensus 118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl----~~v~~v~gDa~---------~l 184 (298)
T 3fpf_A 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV----DGVNVITGDET---------VI 184 (298)
T ss_dssp TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC----CSEEEEESCGG---------GG
T ss_pred cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC----CCeEEEECchh---------hC
Confidence 34568999999999998777665554 567999999999999999999988765 35666543321 12
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh--hHHHHHHHHcCCeEEEEc
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE--PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~~g~~~~~~~ 525 (564)
++++||+|+.+.. ......+++.+.++| +|+| ++++......... ... ......||++..+.
T Consensus 185 ~d~~FDvV~~~a~---~~d~~~~l~el~r~L-kPGG--------~Lvv~~~~~~r~~l~~~v-~~~~~~gf~~~~~~ 248 (298)
T 3fpf_A 185 DGLEFDVLMVAAL---AEPKRRVFRNIHRYV-DTET--------RIIYRTYTGMRAILYAPV-SDDDITGFRRAGVV 248 (298)
T ss_dssp GGCCCSEEEECTT---CSCHHHHHHHHHHHC-CTTC--------EEEEEECCGGGGGSSCCC-CTGGGTTEEEEEEE
T ss_pred CCCCcCEEEECCC---ccCHHHHHHHHHHHc-CCCc--------EEEEEcCcchhhhccccC-ChhhhhhhhheeEE
Confidence 3579999997554 477889999999999 9988 7776543321100 000 11134588877665
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-10 Score=110.18 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++... ...+++++++|+... + +...++||
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-l--~~~~~~fD 165 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-V--RKFKNEFD 165 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-G--GGCSSCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-H--hhCCCCce
Confidence 456899999999999999999876678999999999999999987632 136899999997542 1 11357899
Q ss_pred EEEEcccccCCCh-h--HHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSP-E--KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~-~--~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++...-+++.. . ....++++++++|+|||++++..
T Consensus 166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9998543221210 1 12679999999999999999863
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-10 Score=109.68 Aligned_cols=107 Identities=17% Similarity=0.106 Sum_probs=85.6
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
...+...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++....+ .++++...|+.... ++++
T Consensus 84 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 157 (248)
T 2yvl_A 84 ALKLNLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE----VPEG 157 (248)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC----CCTT
T ss_pred HHhcCCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc----cCCC
Confidence 34445568899999999999999999998 7899999999999999998765433 57888888886421 1457
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+||+|+++ .+ ++..+++++.++|+|||.+++....
T Consensus 158 ~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 158 IFHAAFVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp CBSEEEEC-----SS--CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred cccEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 89999983 32 4457899999999999999997653
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.8e-10 Score=106.31 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=89.4
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
.|..+......+..+ +.++.+|||||||+|.++..++..+. +|+++|+|+.+++.++++... .++.+...
T Consensus 39 ~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~-------~~~~~~~~ 108 (245)
T 3ggd_A 39 VERAVVVDLPRFELL--FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA-------ANISYRLL 108 (245)
T ss_dssp GGGTHHHHHHHHTTT--SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC-------TTEEEEEC
T ss_pred hHHHHHHHHHHHhhc--cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc-------cCceEEEC
Confidence 344444444444433 45788999999999988888877665 899999999999999998621 35777776
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
|..+......+. ....||+|++..++++.. ....+++.+.++| +|+| .++++..
T Consensus 109 d~~~~~~~~~~~--~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~ 164 (245)
T 3ggd_A 109 DGLVPEQAAQIH--SEIGDANIYMRTGFHHIPVEKRELLGQSLRILL-GKQG--------AMYLIEL 164 (245)
T ss_dssp CTTCHHHHHHHH--HHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHH-TTTC--------EEEEEEE
T ss_pred cccccccccccc--cccCccEEEEcchhhcCCHHHHHHHHHHHHHHc-CCCC--------EEEEEeC
Confidence 665432111110 012599999999998877 8899999999999 9988 7666644
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-10 Score=110.65 Aligned_cols=147 Identities=16% Similarity=0.094 Sum_probs=97.7
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
+-.++..|...+.......++.+|||+|||||.++..++..++.+|+++|+++.|++.+.++ . .++...
T Consensus 66 vsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~----~-----~rv~~~-- 134 (291)
T 3hp7_A 66 VSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ----D-----DRVRSM-- 134 (291)
T ss_dssp SSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT----C-----TTEEEE--
T ss_pred ccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----C-----ccccee--
Confidence 34556777777776654557889999999999999888888788999999999999874432 1 112111
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-----cc-------
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-----RQ------- 504 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-----r~------- 504 (564)
.-.+..... ...++..+||+|+ +|+.+. ++..++..+.++| +|+| .+++.... +.
T Consensus 135 ~~~ni~~l~-~~~l~~~~fD~v~-~d~sf~--sl~~vL~e~~rvL-kpGG--------~lv~lvkPqfe~~~~~~~~~G~ 201 (291)
T 3hp7_A 135 EQYNFRYAE-PVDFTEGLPSFAS-IDVSFI--SLNLILPALAKIL-VDGG--------QVVALVKPQFEAGREQIGKNGI 201 (291)
T ss_dssp CSCCGGGCC-GGGCTTCCCSEEE-ECCSSS--CGGGTHHHHHHHS-CTTC--------EEEEEECGGGTSCGGGCC-CCC
T ss_pred cccCceecc-hhhCCCCCCCEEE-EEeeHh--hHHHHHHHHHHHc-CcCC--------EEEEEECcccccChhhcCCCCc
Confidence 111100010 0123334599987 476665 5799999999999 9988 66665222 10
Q ss_pred --------CChhHHHHHHHHcCCeEEEEcCC
Q 008457 505 --------VDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 505 --------~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.....+.+.+.++||.+..+...
T Consensus 202 vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 202 VRESSIHEKVLETVTAFAVDYGFSVKGLDFS 232 (291)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Confidence 11235667788899999988644
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-10 Score=117.74 Aligned_cols=144 Identities=13% Similarity=0.149 Sum_probs=105.2
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN 440 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~ 440 (564)
...+++.+.......++.+|||+|||+|.+...++..+ .+|+++|+++.+++.++++ +.. .....+..
T Consensus 92 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g-~~v~gvD~s~~~~~~a~~~----~~~-------~~~~~~~~ 159 (416)
T 4e2x_A 92 FAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAG-VRHLGFEPSSGVAAKAREK----GIR-------VRTDFFEK 159 (416)
T ss_dssp HHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTT-CEEEEECCCHHHHHHHHTT----TCC-------EECSCCSH
T ss_pred HHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcC-CcEEEECCCHHHHHHHHHc----CCC-------cceeeech
Confidence 34566667666666678899999999998777777654 4899999999999988876 221 11111111
Q ss_pred CccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee------------------
Q 008457 441 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF------------------ 502 (564)
Q Consensus 441 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~------------------ 502 (564)
.....+ ++.+++||+|++..++++..+...+++.+.++| +|+| .+++..+.
T Consensus 160 -~~~~~l-~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~ 228 (416)
T 4e2x_A 160 -ATADDV-RRTEGPANVIYAANTLCHIPYVQSVLEGVDALL-APDG--------VFVFEDPYLGDIVAKTSFDQIFDEHF 228 (416)
T ss_dssp -HHHHHH-HHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHE-EEEE--------EEEEEEECHHHHHHHTCGGGCSTTCC
T ss_pred -hhHhhc-ccCCCCEEEEEECChHHhcCCHHHHHHHHHHHc-CCCe--------EEEEEeCChHHhhhhcchhhhhhhhh
Confidence 111111 234679999999999999999999999999999 9988 77776542
Q ss_pred ccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 503 RQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 503 r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
+..+...+...++++||++.++...
T Consensus 229 ~~~s~~~l~~ll~~aGf~~~~~~~~ 253 (416)
T 4e2x_A 229 FLFSATSVQGMAQRCGFELVDVQRL 253 (416)
T ss_dssp EECCHHHHHHHHHHTTEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHcCCEEEEEEEc
Confidence 1123356788889999999998754
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-09 Score=110.95 Aligned_cols=133 Identities=12% Similarity=0.109 Sum_probs=103.9
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++++..++.. +++.+...|..+. +.
T Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-------~~- 254 (359)
T 1x19_A 187 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA---DRMRGIAVDIYKE-------SY- 254 (359)
T ss_dssp CCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCT---TTEEEEECCTTTS-------CC-
T ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCC---CCEEEEeCccccC-------CC-
Confidence 34577899999999998888887765 459999999 99999999999887763 5688887776543 11
Q ss_pred CCCccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee----------------------cc---
Q 008457 452 NEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIF----------------------RQ--- 504 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~----------------------r~--- 504 (564)
..+|+|++..++++..+ ...+++.+.++| +|+| .+++.... +.
T Consensus 255 -~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L-~pgG--------~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 324 (359)
T 1x19_A 255 -PEADAVLFCRILYSANEQLSTIMCKKAFDAM-RSGG--------RLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLG 324 (359)
T ss_dssp -CCCSEEEEESCGGGSCHHHHHHHHHHHHTTC-CTTC--------EEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCC
T ss_pred -CCCCEEEEechhccCCHHHHHHHHHHHHHhc-CCCC--------EEEEEecccCCCCCchHHHHHHHHHhcCCCCcccC
Confidence 23499999999988766 889999999999 9988 77665421 11
Q ss_pred -CChhHHHHHHHHcCCeEEEEcCC
Q 008457 505 -VDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 505 -~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.+..++.+.++++||++.++...
T Consensus 325 ~~t~~e~~~ll~~aGf~~v~~~~~ 348 (359)
T 1x19_A 325 FKEQARYKEILESLGYKDVTMVRK 348 (359)
T ss_dssp CCCGGGHHHHHHHHTCEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCceEEEEec
Confidence 34567888889999999988743
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.11 E-value=9.7e-10 Score=101.85 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=85.4
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+..++. ++.+...|+.+ + +.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~~---------~-~~ 111 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-----KFKVFIGDVSE---------F-NS 111 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-----SEEEEESCGGG---------C-CC
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----CEEEEECchHH---------c-CC
Confidence 347889999999999888888777667899999999999999999988764 35555544432 1 24
Q ss_pred CccEEEEeceeeCCC---ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 454 GFEVILGTDVSYIPE---AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~---~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
+||+|+++.+ |+.. ....+++.+.+++ | .+++...........+.+.+.+.|++++.+.
T Consensus 112 ~~D~v~~~~p-~~~~~~~~~~~~l~~~~~~l----~--------~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 112 RVDIVIMNPP-FGSQRKHADRPFLLKAFEIS----D--------VVYSIHLAKPEVRRFIEKFSWEHGFVVTHRL 173 (207)
T ss_dssp CCSEEEECCC-CSSSSTTTTHHHHHHHHHHC----S--------EEEEEEECCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCEEEEcCC-CccccCCchHHHHHHHHHhc----C--------cEEEEEeCCcCCHHHHHHHHHHCCCeEEEEE
Confidence 8999986544 4432 3445666666655 3 3444432222223345667788999988775
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=105.22 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCC---------cEEEEEeCChHHHHHHHhcccccCCCeeEE-EecCCccccc----
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPD---------VFVYACDFSPRAVNLVMTHKDFTETRVSTF-VCDLISDDLS---- 139 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~---------~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~-~~d~~~~~~~---- 139 (564)
.++.+|||+|||+|.++..+++..+. .+|+|+|+|+.+ ...++++. .+|+......
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PLEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cCCCCeEEEeccCCCHHHHHHHH
Confidence 57899999999999999999998643 799999999832 12357777 7777543210
Q ss_pred CCCCCCceeEEEEcccccCCC--hhHH-------HHHHHHHHhccCCCeEEEEEecC
Q 008457 140 RQISPSSIDIVTMVFVLSAVS--PEKM-------SLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 140 ~~~~~~~fD~V~~~~vl~~~~--~~~~-------~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
..+++++||+|++...+++.. ..+. ..+++++.++|||||.+++..+.
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 013456899999976554321 0122 47899999999999999997654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=117.57 Aligned_cols=117 Identities=11% Similarity=0.125 Sum_probs=87.6
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCce
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
..+...++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++....+..+.+.++|+.... ....++|
T Consensus 95 ~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~---~~~~~~F 171 (464)
T 3m6w_A 95 VLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALA---EAFGTYF 171 (464)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHH---HHHCSCE
T ss_pred HhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhh---hhccccC
Confidence 445567899999999999999999998854 379999999999999999987655544888888875432 1135789
Q ss_pred eEEEEc------ccccCCC-------hhH-------HHHHHHHHHhccCCCeEEEEEecCC
Q 008457 148 DIVTMV------FVLSAVS-------PEK-------MSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 148 D~V~~~------~vl~~~~-------~~~-------~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
|+|++. .++.+-+ +++ ...+|.++.++|||||.|++++-..
T Consensus 172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 999962 1222221 112 3779999999999999999876443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.5e-10 Score=112.94 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=85.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC---CeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET---RVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~---~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++....+. +++++++|+........-...+||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 478899999999999999999873 45899999999999999988765443 78999999854311000014689999
Q ss_pred EEccc---------ccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 151 TMVFV---------LSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 151 ~~~~v---------l~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++.-- ..+. .....++.++.+.|+|||+++++...
T Consensus 298 i~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGAC--RGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp EECCSSTTTCSSSSSCCC--THHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EECCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99632 1222 57788999999999999999987543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=116.45 Aligned_cols=103 Identities=25% Similarity=0.235 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++++|||||||+|.++...++.+ ..+|+|+|.|+ +++.|++..... ..+|+++.+++....+ + ++||+|+
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l----p-e~~Dviv 154 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL----P-EQVDAIV 154 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC----S-SCEEEEE
T ss_pred cCCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC----C-ccccEEE
Confidence 468899999999999988777763 35899999986 788888765543 3679999999976543 3 6899999
Q ss_pred EcccccCCC-hhHHHHHHHHHHhccCCCeEEEE
Q 008457 152 MVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 152 ~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+...-..+. ...+..++....++|||||.++-
T Consensus 155 sE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 155 SEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred eecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 954433222 23577888889999999999875
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-09 Score=109.89 Aligned_cols=109 Identities=11% Similarity=0.073 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..++.. +..|+++|+|+.+++.|+++....+....+.++|+..... .+ .+.||+|++.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~--~~-~~~fD~Ii~d 287 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLR--GL-EGPFHHVLLD 287 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHH--TC-CCCEEEEEEC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHH--Hh-cCCCCEEEEC
Confidence 35899999999999999999987 5669999999999999999876555445677888754211 12 3349999996
Q ss_pred ccccCCC-------hhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 154 FVLSAVS-------PEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 154 ~vl~~~~-------~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
--...-+ ..+...++..+.++|+|||.+++.+..
T Consensus 288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 4321111 134568899999999999999976543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-10 Score=115.09 Aligned_cols=113 Identities=14% Similarity=0.094 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--C-CeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--T-RVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~-~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|+++....+ . +++++++|+........-...+||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 467899999999999999999862 2489999999999999998876444 2 79999999854211000124589999
Q ss_pred EEcccc-----cCCC--hhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 151 TMVFVL-----SAVS--PEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 151 ~~~~vl-----~~~~--~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++.--. .+.. ......++..+.++|+|||.++++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 984322 1221 245667888999999999999987543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.2e-10 Score=112.19 Aligned_cols=132 Identities=10% Similarity=0.033 Sum_probs=101.9
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++|+..++.. .++.+...|+.+. ++
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--------~~- 247 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS---DRVDVVEGDFFEP--------LP- 247 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT---TTEEEEECCTTSC--------CS-
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCC---CceEEEeCCCCCC--------CC-
Confidence 4467899999999998887777765 458999999 99999999999887763 4688888777532 12
Q ss_pred CCccEEEEeceeeCCCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--c----------------------cCC
Q 008457 453 EGFEVILGTDVSYIPEAI--LPLFATAKELTASSNKSLREDQQPAFILCHIF--R----------------------QVD 506 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~--~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~--r----------------------~~~ 506 (564)
..||+|++..++++.... ..+++.+.++| +|+| .+++.... . ..+
T Consensus 248 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L-~pgG--------~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 318 (360)
T 1tw3_A 248 RKADAIILSFVLLNWPDHDAVRILTRCAEAL-EPGG--------RILIHERDDLHENSFNEQFTELDLRMLVFLGGALRT 318 (360)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHTE-EEEE--------EEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCB
T ss_pred CCccEEEEcccccCCCHHHHHHHHHHHHHhc-CCCc--------EEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCC
Confidence 359999999999876654 58999999999 9987 77766433 1 012
Q ss_pred hhHHHHHHHHcCCeEEEEcCC
Q 008457 507 EPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 507 ~~~~~~~~~~~g~~~~~~~~~ 527 (564)
...+.+.+.++||+++++...
T Consensus 319 ~~e~~~ll~~aGf~~~~~~~~ 339 (360)
T 1tw3_A 319 REKWDGLAASAGLVVEEVRQL 339 (360)
T ss_dssp HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEeC
Confidence 345677888999999998754
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-10 Score=105.75 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCC----CC---CCc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQ----IS---PSS 146 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~----~~---~~~ 146 (564)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.. ...++.++++|+........ +. .++
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 91 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME----------EIAGVRFIRCDIFKETIFDDIDRALREEGIEK 91 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred CCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc----------cCCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence 67899999999999999999888 7899999999741 12478999999876432100 11 148
Q ss_pred eeEEEEcccccCCC---------hhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 147 IDIVTMVFVLSAVS---------PEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 147 fD~V~~~~vl~~~~---------~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
||+|++........ ......+++.+.++|||||.|++..+.
T Consensus 92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 99999976433221 122457889999999999999987654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.8e-10 Score=111.15 Aligned_cols=128 Identities=10% Similarity=0.099 Sum_probs=98.9
Q ss_pred CeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCcc
Q 008457 378 KKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE 456 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD 456 (564)
.+|||+|||+|.++..++... ..+++++|+ +.+++.+++++..+++. .++.+...|+.+. + +.+||
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--------~-~~~~D 235 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAG---ERVSLVGGDMLQE--------V-PSNGD 235 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHT---TSEEEEESCTTTC--------C-CSSCS
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCC---CcEEEecCCCCCC--------C-CCCCC
Confidence 899999999998887777664 459999999 99999999998776543 4678877776542 1 25799
Q ss_pred EEEEeceeeCCCChH--HHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------------------cCChhHHH
Q 008457 457 VILGTDVSYIPEAIL--PLFATAKELTASSNKSLREDQQPAFILCHIFR-----------------------QVDEPSML 511 (564)
Q Consensus 457 ~Ii~~d~~y~~~~~~--~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-----------------------~~~~~~~~ 511 (564)
+|++..++++..... .+++.+.++| +|+| .+++..... ..+..++.
T Consensus 236 ~v~~~~vl~~~~~~~~~~~l~~~~~~L-~pgG--------~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 306 (334)
T 2ip2_A 236 IYLLSRIIGDLDEAASLRLLGNCREAM-AGDG--------RVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVV 306 (334)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHS-CTTC--------EEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHH
T ss_pred EEEEchhccCCCHHHHHHHHHHHHHhc-CCCC--------EEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHH
Confidence 999999998765444 9999999999 9988 777764321 11334667
Q ss_pred HHHHHcCCeEEEEcCC
Q 008457 512 SAATQCGFRLVDKWPS 527 (564)
Q Consensus 512 ~~~~~~g~~~~~~~~~ 527 (564)
+.++++||++.+++..
T Consensus 307 ~ll~~aGf~~~~~~~~ 322 (334)
T 2ip2_A 307 DLLGRGGFAVERIVDL 322 (334)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCceeEEEEC
Confidence 7888999999998743
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.09 E-value=7.9e-11 Score=109.25 Aligned_cols=121 Identities=9% Similarity=0.053 Sum_probs=90.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..++.. .+.+...|+.+.. +.++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~~--------~~~~ 132 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE----NIEPVQSRVEEFP--------SEPP 132 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS----SEEEEECCTTTSC--------CCSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CeEEEecchhhCC--------ccCC
Confidence 57899999999998887777653 569999999999999999999987752 3777777775431 2368
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
||+|++.. ......+++.+.++| +|+| .+++...... ...+.+.+ + ||++.++.
T Consensus 133 ~D~i~~~~----~~~~~~~l~~~~~~L-~~gG--------~l~~~~~~~~--~~~~~~~~-~-g~~~~~~~ 186 (207)
T 1jsx_A 133 FDGVISRA----FASLNDMVSWCHHLP-GEQG--------RFYALKGQMP--EDEIALLP-E-EYQVESVV 186 (207)
T ss_dssp EEEEECSC----SSSHHHHHHHHTTSE-EEEE--------EEEEEESSCC--HHHHHTSC-T-TEEEEEEE
T ss_pred cCEEEEec----cCCHHHHHHHHHHhc-CCCc--------EEEEEeCCCc--hHHHHHHh-c-CCceeeee
Confidence 99999644 366889999999999 9988 7777643322 22233332 2 89888754
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.4e-11 Score=111.61 Aligned_cols=146 Identities=18% Similarity=0.153 Sum_probs=95.0
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
..++..|...+........+++|||||||+|.++..++..++.+|+++|+++.+++.+++|....... .. ..+.
T Consensus 19 srg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~---~~---~~~~ 92 (232)
T 3opn_A 19 SRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVM---EQ---FNFR 92 (232)
T ss_dssp STTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEE---CS---CCGG
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccccc---cc---ceEE
Confidence 34566777777665555578899999999998888888877679999999999999877653221100 00 0011
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------- 503 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-------------- 503 (564)
+.... .+....||.+ .+|+++.. +..+++.+.++| +|+| .+++.....
T Consensus 93 ~~~~~------~~~~~~~d~~-~~D~v~~~--l~~~l~~i~rvL-kpgG--------~lv~~~~p~~e~~~~~~~~~G~~ 154 (232)
T 3opn_A 93 NAVLA------DFEQGRPSFT-SIDVSFIS--LDLILPPLYEIL-EKNG--------EVAALIKPQFEAGREQVGKNGII 154 (232)
T ss_dssp GCCGG------GCCSCCCSEE-EECCSSSC--GGGTHHHHHHHS-CTTC--------EEEEEECHHHHSCHHHHC-CCCC
T ss_pred EeCHh------HcCcCCCCEE-EEEEEhhh--HHHHHHHHHHhc-cCCC--------EEEEEECcccccCHHHhCcCCee
Confidence 11111 1122235654 45666543 488999999999 9988 666652210
Q ss_pred ------cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 ------QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 ------~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
......+.+.+.++||++..+...
T Consensus 155 ~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 155 RDPKVHQMTIEKVLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred cCcchhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence 012235778888999999988543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-10 Score=104.52 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=83.0
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
...+.......++.+|||+|||+|.++..++.. ..+|+++|+++.+++.+++|+..++. .++.+...|+.+..
T Consensus 66 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~~-- 138 (210)
T 3lbf_A 66 VARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDL----HNVSTRHGDGWQGW-- 138 (210)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTC----CSEEEEESCGGGCC--
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCC----CceEEEECCcccCC--
Confidence 333343334557889999999999887777766 67999999999999999999998775 35777766654321
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
...++||+|++..++.+.. +.+.++| +|+| .+++....
T Consensus 139 -----~~~~~~D~i~~~~~~~~~~------~~~~~~L-~pgG--------~lv~~~~~ 176 (210)
T 3lbf_A 139 -----QARAPFDAIIVTAAPPEIP------TALMTQL-DEGG--------ILVLPVGE 176 (210)
T ss_dssp -----GGGCCEEEEEESSBCSSCC------THHHHTE-EEEE--------EEEEEECS
T ss_pred -----ccCCCccEEEEccchhhhh------HHHHHhc-ccCc--------EEEEEEcC
Confidence 1246899999887765543 2578999 9988 77777665
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-10 Score=112.07 Aligned_cols=89 Identities=24% Similarity=0.271 Sum_probs=70.3
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSR 140 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~ 140 (564)
+...+.+.+...++.+|||||||+|.++..|++. +.+|+|+|+|+.+++.++++....+ .+++++++|+....+
T Consensus 16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~-- 91 (285)
T 1zq9_A 16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-- 91 (285)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--
T ss_pred HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc--
Confidence 3455555666678899999999999999999998 5799999999999999998765332 478999999965432
Q ss_pred CCCCCceeEEEEcccccCC
Q 008457 141 QISPSSIDIVTMVFVLSAV 159 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~ 159 (564)
.+||+|+++..+++.
T Consensus 92 ----~~fD~vv~nlpy~~~ 106 (285)
T 1zq9_A 92 ----PFFDTCVANLPYQIS 106 (285)
T ss_dssp ----CCCSEEEEECCGGGH
T ss_pred ----hhhcEEEEecCcccc
Confidence 279999997655443
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-09 Score=99.60 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=85.8
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
+.++.+|||||||+|.++..++... ..+|+++|+|+.+++.+.++.... .++....-|... .....++ .
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~------~~v~~~~~d~~~---~~~~~~~-~ 124 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------NNIIPLLFDASK---PWKYSGI-V 124 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------SSEEEECSCTTC---GGGTTTT-C
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC------CCeEEEEcCCCC---chhhccc-c
Confidence 4478899999999998877777654 468999999999987776655432 234333222221 1111122 3
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc----CChhHHH----HHHHHcCCeEEEE
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----VDEPSML----SAATQCGFRLVDK 524 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~----~~~~~~~----~~~~~~g~~~~~~ 524 (564)
++||+|++. + ..+.....+++.+.++| +|+| .++++.+.+. ......+ +.+++. |++.+.
T Consensus 125 ~~fD~V~~~-~-~~~~~~~~~l~~~~r~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~ 192 (210)
T 1nt2_A 125 EKVDLIYQD-I-AQKNQIEILKANAEFFL-KEKG--------EVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKH 192 (210)
T ss_dssp CCEEEEEEC-C-CSTTHHHHHHHHHHHHE-EEEE--------EEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEE
T ss_pred cceeEEEEe-c-cChhHHHHHHHHHHHHh-CCCC--------EEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeee
Confidence 689999865 3 33333455689999999 9988 8888764432 2223333 336777 999988
Q ss_pred cCC
Q 008457 525 WPS 527 (564)
Q Consensus 525 ~~~ 527 (564)
...
T Consensus 193 ~~~ 195 (210)
T 1nt2_A 193 GSL 195 (210)
T ss_dssp EEC
T ss_pred ecC
Confidence 744
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.07 E-value=8.6e-10 Score=105.60 Aligned_cols=97 Identities=18% Similarity=0.139 Sum_probs=73.1
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.+++|+..++. ++.+...|..+. + .+++
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~-----~v~~~~~d~~~~-------~-~~~~ 105 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL-----KIEFLQGDVLEI-------A-FKNE 105 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-----CCEEEESCGGGC-------C-CCSC
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC-----ceEEEECChhhc-------c-cCCC
Confidence 46789999999999887777765 45899999999999999999887653 355555554322 1 1358
Q ss_pred ccEEEEe-cee--eCCCChHHHHHHHHHHhhccCC
Q 008457 455 FEVILGT-DVS--YIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 455 fD~Ii~~-d~~--y~~~~~~~l~~~~~~ll~~~~g 486 (564)
||+|++. ..+ +.......+++.+.++| +|+|
T Consensus 106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG 139 (252)
T 1wzn_A 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEAL-KPGG 139 (252)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHE-EEEE
T ss_pred ccEEEEcCCchhcCCHHHHHHHHHHHHHHc-CCCe
Confidence 9999975 222 22346788999999999 9987
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-10 Score=102.21 Aligned_cols=109 Identities=19% Similarity=0.163 Sum_probs=79.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++|+..++. ++.+...|+.+. .... +...++|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~--~~~~-~~~~~~~ 111 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-----GARVVALPVEVF--LPEA-KAQGERF 111 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-----CCEEECSCHHHH--HHHH-HHTTCCE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC-----ceEEEeccHHHH--HHhh-hccCCce
Confidence 678999999999988877777655 499999999999999999998764 345544443211 1111 1123489
Q ss_pred cEEEEeceeeCCCChHHHHHHHH--HHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 456 EVILGTDVSYIPEAILPLFATAK--ELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~--~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
|+|++..+ |+ ...+.+++.+. ++| +|+| .++++...+.
T Consensus 112 D~i~~~~~-~~-~~~~~~~~~~~~~~~L-~~gG--------~~~~~~~~~~ 151 (171)
T 1ws6_A 112 TVAFMAPP-YA-MDLAALFGELLASGLV-EAGG--------LYVLQHPKDL 151 (171)
T ss_dssp EEEEECCC-TT-SCTTHHHHHHHHHTCE-EEEE--------EEEEEEETTS
T ss_pred EEEEECCC-Cc-hhHHHHHHHHHhhccc-CCCc--------EEEEEeCCcc
Confidence 99987654 55 67788888888 899 9988 7877766554
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=7.1e-10 Score=106.56 Aligned_cols=130 Identities=17% Similarity=0.222 Sum_probs=96.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.++++....+ .+++++++|.... .+.+.||.|+
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~-----~~~~~~D~Vi 197 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-----PGENIADRIL 197 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC-----CCCSCEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHh-----ccccCCCEEE
Confidence 689999999999999999999884 4689999999999999998875443 5689999998642 1467899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
++... ....++..+.++|||||++.+.++...... .....+.+.+..++.
T Consensus 198 ~~~p~------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~------------------------~~~~~e~i~~~~~~~ 247 (278)
T 3k6r_A 198 MGYVV------RTHEFIPKALSIAKDGAIIHYHNTVPEKLM------------------------PREPFETFKRITKEY 247 (278)
T ss_dssp ECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT------------------------TTTTHHHHHHHHHHT
T ss_pred ECCCC------cHHHHHHHHHHHcCCCCEEEEEeeeccccc------------------------chhHHHHHHHHHHHc
Confidence 76421 123578888899999999877544321100 001356778889999
Q ss_pred CCcEEEee
Q 008457 232 GFDVEELG 239 (564)
Q Consensus 232 Gf~~~~~~ 239 (564)
|+++....
T Consensus 248 g~~v~~~~ 255 (278)
T 3k6r_A 248 GYDVEKLN 255 (278)
T ss_dssp TCEEEEEE
T ss_pred CCcEEEEE
Confidence 99875543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.3e-10 Score=98.92 Aligned_cols=141 Identities=11% Similarity=0.129 Sum_probs=94.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
.+...+.+.+.......++.+|||+|||+|.++..++.. + ..+|+++|+++ +++. .++.+...
T Consensus 5 r~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------------~~~~~~~~ 69 (180)
T 1ej0_A 5 RAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------------VGVDFLQG 69 (180)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------------TTEEEEES
T ss_pred hHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------------CcEEEEEc
Confidence 344555666655444557889999999999888877776 3 37999999998 6432 34666666
Q ss_pred ecCCCccchhhhh-hcCCCccEEEEeceeeCCCCh-----------HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 437 EWGNRDHIEAIKE-ENNEGFEVILGTDVSYIPEAI-----------LPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 437 ~w~~~~~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~-----------~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
|+.+....+.+.. +++++||+|++..+++..... ..+++.+.++| +|+| .+++.....
T Consensus 70 d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~gG--------~l~~~~~~~- 139 (180)
T 1ej0_A 70 DFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVL-APGG--------SFVVKVFQG- 139 (180)
T ss_dssp CTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE-EEEE--------EEEEEEESS-
T ss_pred ccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHc-CCCc--------EEEEEEecC-
Confidence 6654321111111 456799999987776655554 78999999999 9988 777654433
Q ss_pred CChhHHHHHHHHcCCeEEEEc
Q 008457 505 VDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 505 ~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.....+.+.+.+. |...++.
T Consensus 140 ~~~~~~~~~~~~~-~~~~~~~ 159 (180)
T 1ej0_A 140 EGFDEYLREIRSL-FTKVKVR 159 (180)
T ss_dssp TTHHHHHHHHHHH-EEEEEEE
T ss_pred CcHHHHHHHHHHh-hhhEEee
Confidence 3334566666664 7766665
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-10 Score=112.58 Aligned_cols=109 Identities=19% Similarity=0.276 Sum_probs=84.7
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+.+.......++.+|||||||+|.++..++..+..+|+++|+++ +++.+++++..|++. .++.+...|+.+..
T Consensus 39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~---~~v~~~~~d~~~~~-- 112 (348)
T 2y1w_A 39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT---DRIVVIPGKVEEVS-- 112 (348)
T ss_dssp HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT---TTEEEEESCTTTCC--
T ss_pred HHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCC---CcEEEEEcchhhCC--
Confidence 445555555568899999999999888888777777999999996 889999999998874 56787777665431
Q ss_pred hhhhhhcCCCccEEEEeceeeC--CCChHHHHHHHHHHhhccCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNK 486 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g 486 (564)
+ +++||+|++..+.++ .+.....+..+.++| +|+|
T Consensus 113 -----~-~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~L-kpgG 149 (348)
T 2y1w_A 113 -----L-PEQVDIIISEPMGYMLFNERMLESYLHAKKYL-KPSG 149 (348)
T ss_dssp -----C-SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGE-EEEE
T ss_pred -----C-CCceeEEEEeCchhcCChHHHHHHHHHHHhhc-CCCe
Confidence 1 258999998877765 345667777888999 9988
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=110.73 Aligned_cols=133 Identities=9% Similarity=0.155 Sum_probs=100.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
...+|||+|||+|.++..++... ..+|+++|+ +.+++.+++++...+.. +++.+...|..+... +++ ++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~-----~~p-~~ 248 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGS---ERIHGHGANLLDRDV-----PFP-TG 248 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTG---GGEEEEECCCCSSSC-----CCC-CC
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcc---cceEEEEccccccCC-----CCC-CC
Confidence 56799999999998887777754 459999999 99999999998876653 578888877654310 122 58
Q ss_pred ccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----------------------------c
Q 008457 455 FEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR----------------------------Q 504 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r----------------------------~ 504 (564)
||+|++..++++..+ ...+++.+.+.| +|+| .+++..... .
T Consensus 249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L-~pgG--------~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (363)
T 3dp7_A 249 FDAVWMSQFLDCFSEEEVISILTRVAQSI-GKDS--------KVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKM 319 (363)
T ss_dssp CSEEEEESCSTTSCHHHHHHHHHHHHHHC-CTTC--------EEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cCEEEEechhhhCCHHHHHHHHHHHHHhc-CCCc--------EEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcc
Confidence 999999999986554 468899999999 9988 777654321 1
Q ss_pred CChhHHHHHHHHcCCeEEEEcCC
Q 008457 505 VDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 505 ~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.+..++.+.++++||+++++...
T Consensus 320 ~t~~e~~~ll~~AGf~~v~~~~~ 342 (363)
T 3dp7_A 320 FHSDDLIRCIENAGLEVEEIQDN 342 (363)
T ss_dssp CCHHHHHHHHHTTTEEESCCCCC
T ss_pred cCHHHHHHHHHHcCCeEEEEEeC
Confidence 13456778888899999887743
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=104.55 Aligned_cols=132 Identities=11% Similarity=0.054 Sum_probs=94.9
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchh
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
++.......++.+|||+|||+|.++..++.. ..+|+++|+++.+++.+++|+..+++. .++.+...|+.+..
T Consensus 82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~~---- 153 (248)
T 2yvl_A 82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLG---KNVKFFNVDFKDAE---- 153 (248)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCC---TTEEEECSCTTTSC----
T ss_pred HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC---CcEEEEEcChhhcc----
Confidence 3443344557889999999999888877777 779999999999999999999887653 45666655554321
Q ss_pred hhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 447 IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
....+||+|++ +......+++.+.++| +|+| .+++....... ...+.+.+.+. |...+++
T Consensus 154 ---~~~~~~D~v~~-----~~~~~~~~l~~~~~~L-~~gG--------~l~~~~~~~~~-~~~~~~~l~~~-f~~~~~~ 213 (248)
T 2yvl_A 154 ---VPEGIFHAAFV-----DVREPWHYLEKVHKSL-MEGA--------PVGFLLPTANQ-VIKLLESIENY-FGNLEVV 213 (248)
T ss_dssp ---CCTTCBSEEEE-----CSSCGGGGHHHHHHHB-CTTC--------EEEEEESSHHH-HHHHHHHSTTT-EEEEEEE
T ss_pred ---cCCCcccEEEE-----CCcCHHHHHHHHHHHc-CCCC--------EEEEEeCCHHH-HHHHHHHHHhh-CCcceEE
Confidence 13458999986 3346678899999999 9988 77777664322 22455666555 7666655
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=109.68 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=103.6
Q ss_pred cCCCCCC-CCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh
Q 008457 370 RNPTIVA-GKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI 447 (564)
Q Consensus 370 ~~~~~~~-~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~ 447 (564)
......+ +.+|||+|||+|.++..++... ..+++++|+ +.+++.+++++..++.. +++.+...|+.+..
T Consensus 172 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~----- 242 (352)
T 3mcz_A 172 SELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLG---GRVEFFEKNLLDAR----- 242 (352)
T ss_dssp HTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCG---GGEEEEECCTTCGG-----
T ss_pred HhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCC---CceEEEeCCcccCc-----
Confidence 3334445 7899999999998888777765 459999999 89999999999887653 56888888776431
Q ss_pred hhhcCCCccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-----------------------
Q 008457 448 KEENNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIF----------------------- 502 (564)
Q Consensus 448 ~~~~~~~fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~----------------------- 502 (564)
...+..||+|++..++++..+ ...+++.+.++| +|+| .+++....
T Consensus 243 -~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L-~pgG--------~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (352)
T 3mcz_A 243 -NFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLV-KPGG--------ALLILTMTMNDDRVTPALSADFSLHMMVNTN 312 (352)
T ss_dssp -GGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTE-EEEE--------EEEEEEECCCTTSSSSHHHHHHHHHHHHHST
T ss_pred -ccCCCCccEEEEecccccCCHHHHHHHHHHHHHHc-CCCC--------EEEEEEeccCCCCCCCchHHHhhHHHHhhCC
Confidence 113457999999999987664 489999999999 9988 77765431
Q ss_pred --ccCChhHHHHHHHHcCCeEEEE
Q 008457 503 --RQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 503 --r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
+..+...+.+.++++||++++.
T Consensus 313 ~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 313 HGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp TCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CCCcCCHHHHHHHHHHCCCceeee
Confidence 1223456778888999999984
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-10 Score=105.35 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=87.5
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
.+.+++.... .++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++.. ..++.+...|..+.
T Consensus 31 ~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~------~~~i~~~~~d~~~~- 101 (215)
T 2pxx_A 31 SFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH------VPQLRWETMDVRKL- 101 (215)
T ss_dssp HHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT------CTTCEEEECCTTSC-
T ss_pred HHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc------CCCcEEEEcchhcC-
Confidence 3566665543 47789999999999888888777666899999999999999998753 13566666665432
Q ss_pred cchhhhhhcCCCccEEEEeceeeC---------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYI---------------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~---------------~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
++++++||+|++..++.. ......+++.+.++| +|+| .+++....+
T Consensus 102 ------~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~li~~~~~~ 162 (215)
T 2pxx_A 102 ------DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVL-VPGG--------RFISMTSAA 162 (215)
T ss_dssp ------CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHE-EEEE--------EEEEEESCC
T ss_pred ------CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhC-cCCC--------EEEEEeCCC
Confidence 234578999998876633 235688999999999 9988 777765544
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.4e-09 Score=98.38 Aligned_cols=152 Identities=15% Similarity=0.120 Sum_probs=94.2
Q ss_pred ceechhHH-HHHHHHhcCC---CCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCC
Q 008457 355 LMLWESAH-LMAAVLARNP---TIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFL 428 (564)
Q Consensus 355 ~~~W~~~~-~l~~~l~~~~---~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~ 428 (564)
...|+.-. .++..++... .+.++.+|||||||+|..+..++.. ...+|+++|+++.+++.+.+.....
T Consensus 51 yr~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r------ 124 (232)
T 3id6_C 51 YREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR------ 124 (232)
T ss_dssp EEECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC------
T ss_pred hhhhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------
Confidence 34454322 3566665533 3668999999999999888887764 2459999999999886554443321
Q ss_pred CceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc----
Q 008457 429 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ---- 504 (564)
Q Consensus 429 ~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~---- 504 (564)
.++.+...|-... ... ....++||+|++ |+.. +.....+...+.++| +|+| .++++.+.+.
T Consensus 125 ~nv~~i~~Da~~~---~~~-~~~~~~~D~I~~-d~a~-~~~~~il~~~~~~~L-kpGG--------~lvisik~~~~d~t 189 (232)
T 3id6_C 125 PNIFPLLADARFP---QSY-KSVVENVDVLYV-DIAQ-PDQTDIAIYNAKFFL-KVNG--------DMLLVIKARSIDVT 189 (232)
T ss_dssp TTEEEEECCTTCG---GGT-TTTCCCEEEEEE-CCCC-TTHHHHHHHHHHHHE-EEEE--------EEEEEEC-------
T ss_pred CCeEEEEcccccc---hhh-hccccceEEEEe-cCCC-hhHHHHHHHHHHHhC-CCCe--------EEEEEEccCCcccC
Confidence 2455554443321 111 112358999985 4432 333445566777799 9988 7777644332
Q ss_pred ----CChhHHHHHHHHcCCeEEEEcCC
Q 008457 505 ----VDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 505 ----~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
.........+++.||++.+....
T Consensus 190 ~~~~e~~~~~~~~L~~~gf~~~~~~~l 216 (232)
T 3id6_C 190 KDPKEIYKTEVEKLENSNFETIQIINL 216 (232)
T ss_dssp CCSSSSTTHHHHHHHHTTEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 11134457777889999998744
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-10 Score=114.15 Aligned_cols=104 Identities=19% Similarity=0.116 Sum_probs=79.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.+.+|||||||+|.++..++..+. .+|+++|+++.+++.+++|+..|+.. +++...|... ..+++
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-----~~~~~~d~~~---------~~~~~ 261 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE-----GEVFASNVFS---------EVKGR 261 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC-----CEEEECSTTT---------TCCSC
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CEEEEccccc---------cccCC
Confidence 467999999999988888887764 49999999999999999999988763 2333333221 12568
Q ss_pred ccEEEEeceeeC-----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 455 FEVILGTDVSYI-----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 455 fD~Ii~~d~~y~-----~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
||+|+++.++.. ......+++.+.++| +|+| .+++....
T Consensus 262 fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~ 305 (343)
T 2pjd_A 262 FDMIISNPPFHDGMQTSLDAAQTLIRGAVRHL-NSGG--------ELRIVANA 305 (343)
T ss_dssp EEEEEECCCCCSSSHHHHHHHHHHHHHHGGGE-EEEE--------EEEEEEET
T ss_pred eeEEEECCCcccCccCCHHHHHHHHHHHHHhC-CCCc--------EEEEEEcC
Confidence 999998877653 345688999999999 9988 77776544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.7e-10 Score=110.48 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=89.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++.. +. ++.+|+++|+|+.+++.+++|+..|++. .++.+...|..+. . .+|
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~---~~v~~~~~D~~~~---------~-~~f 259 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLE---HKIIPILSDVREV---------D-VKG 259 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCGGGC---------C-CCE
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECChHHh---------c-CCC
Confidence 778999999999988887 65 6789999999999999999999999874 3566665554322 1 689
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHc-CCeEEEE
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC-GFRLVDK 524 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-g~~~~~~ 524 (564)
|+|++ |..+. ...+++.+.++| +|+| .++++..... ...+.+.+.+. |+++..+
T Consensus 260 D~Vi~-dpP~~---~~~~l~~~~~~L-~~gG--------~l~~~~~~~~--~~~~~~~l~~~~~~~i~~~ 314 (336)
T 2yx1_A 260 NRVIM-NLPKF---AHKFIDKALDIV-EEGG--------VIHYYTIGKD--FDKAIKLFEKKCDCEVLEK 314 (336)
T ss_dssp EEEEE-CCTTT---GGGGHHHHHHHE-EEEE--------EEEEEEEESS--SHHHHHHHHHHSEEEEEEE
T ss_pred cEEEE-CCcHh---HHHHHHHHHHHc-CCCC--------EEEEEEeecC--chHHHHHHHHhcCCcEEEE
Confidence 99986 44333 348899999999 9977 6666554444 34566667666 6666544
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-09 Score=108.75 Aligned_cols=130 Identities=19% Similarity=0.147 Sum_probs=94.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh--cCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~--~~~ 453 (564)
++.+|||+|||+|.++..++.. +.+|+++|+++.+++.+++|+..|++. .+.+...|.. +.+..+ ...
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~----~~~~~~~d~~-----~~~~~~~~~~~ 278 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG----NVRVLEANAF-----DLLRRLEKEGE 278 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT----TEEEEESCHH-----HHHHHHHHTTC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC----CceEEECCHH-----HHHHHHHhcCC
Confidence 6789999999999888888877 779999999999999999999999873 3555544332 111111 256
Q ss_pred CccEEEEeceeeCC----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHH----HHHHHcCC
Q 008457 454 GFEVILGTDVSYIP----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML----SAATQCGF 519 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~----------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~~g~ 519 (564)
+||+|++ |..+.. .....++..+.++| +|+| .++++........+.|. +.+.+.|.
T Consensus 279 ~fD~Ii~-dpP~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~i~~~~~~~g~ 348 (382)
T 1wxx_A 279 RFDLVVL-DPPAFAKGKKDVERAYRAYKEVNLRAIKLL-KEGG--------ILATASCSHHMTEPLFYAMVAEAAQDAHR 348 (382)
T ss_dssp CEEEEEE-CCCCSCCSTTSHHHHHHHHHHHHHHHHHTE-EEEE--------EEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeeEEEE-CCCCCCCChhHHHHHHHHHHHHHHHHHHhc-CCCC--------EEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 8999985 554432 34577888999999 9988 88888777666654443 34456676
Q ss_pred eEEEEc
Q 008457 520 RLVDKW 525 (564)
Q Consensus 520 ~~~~~~ 525 (564)
.+..+.
T Consensus 349 ~~~~i~ 354 (382)
T 1wxx_A 349 LLRVVE 354 (382)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 555443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-09 Score=108.62 Aligned_cols=138 Identities=20% Similarity=0.116 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 362 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 362 ~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
..++..+.......++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..+++. .+.+...|..
T Consensus 189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~----~i~~~~~D~~ 264 (354)
T 3tma_A 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS----WIRFLRADAR 264 (354)
T ss_dssp HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT----TCEEEECCGG
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC----ceEEEeCChh
Confidence 3456555554445578899999999999888888754 368999999999999999999998863 5666666554
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCCC---------hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHH
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPEA---------ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSM 510 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~ 510 (564)
+. +.+...||+|++ |..|.... +..+++.+.++| +|+| .+++..... .+
T Consensus 265 ~~-------~~~~~~~D~Ii~-npPyg~r~~~~~~~~~~~~~~~~~~~~~L-kpgG--------~l~i~t~~~-----~~ 322 (354)
T 3tma_A 265 HL-------PRFFPEVDRILA-NPPHGLRLGRKEGLFHLYWDFLRGALALL-PPGG--------RVALLTLRP-----AL 322 (354)
T ss_dssp GG-------GGTCCCCSEEEE-CCCSCC----CHHHHHHHHHHHHHHHHTS-CTTC--------EEEEEESCH-----HH
T ss_pred hC-------ccccCCCCEEEE-CCCCcCccCCcccHHHHHHHHHHHHHHhc-CCCc--------EEEEEeCCH-----HH
Confidence 32 123456899885 55565432 378899999999 9988 777664432 23
Q ss_pred HHHHHHcCCeEEEEc
Q 008457 511 LSAATQCGFRLVDKW 525 (564)
Q Consensus 511 ~~~~~~~g~~~~~~~ 525 (564)
++.+.+.|+++.+..
T Consensus 323 ~~~~~~~g~~~~~~~ 337 (354)
T 3tma_A 323 LKRALPPGFALRHAR 337 (354)
T ss_dssp HHHHCCTTEEEEEEE
T ss_pred HHHHhhcCcEEEEEE
Confidence 333222888887765
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=107.68 Aligned_cols=143 Identities=10% Similarity=0.039 Sum_probs=94.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||||||+|.++..++... ..+|+++|+++.+++.+++++..........++.+...|..+ .+.....++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~~~~~~~ 169 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLA-----FVRQTPDNT 169 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH-----HHHSSCTTC
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH-----HHHhccCCc
Confidence 56899999999998888887653 569999999999999999987421000112456666554321 111113578
Q ss_pred ccEEEEeceeeCCC--Ch--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC---ChhHHHHHHHHcCCeEEEEcCC
Q 008457 455 FEVILGTDVSYIPE--AI--LPLFATAKELTASSNKSLREDQQPAFILCHIFRQV---DEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 455 fD~Ii~~d~~y~~~--~~--~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~---~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
||+|++.-...... .+ ..+++.+.++| +|+| ++++....... ....+.+.+++.||..++++..
T Consensus 170 fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~L-kpgG--------~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 170 YDVVIIDTTDPAGPASKLFGEAFYKDVLRIL-KPDG--------ICCNQGESIWLDLELIEKMSRFIRETGFASVQYALM 240 (304)
T ss_dssp EEEEEEECC---------CCHHHHHHHHHHE-EEEE--------EEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred eeEEEECCCCccccchhhhHHHHHHHHHHhc-CCCc--------EEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEe
Confidence 99999743222211 11 68899999999 9988 77776543222 2246778888999998888766
Q ss_pred CCCCC
Q 008457 528 KNSAS 532 (564)
Q Consensus 528 ~~~~~ 532 (564)
..|..
T Consensus 241 ~vP~y 245 (304)
T 3bwc_A 241 HVPTY 245 (304)
T ss_dssp CCTTS
T ss_pred ecccc
Confidence 55544
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-09 Score=109.76 Aligned_cols=111 Identities=17% Similarity=0.037 Sum_probs=84.5
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|+++....+ .+++++++|+........-..++||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6789999999999999999988 6789999999999999998875443 348999999854311000025689999995
Q ss_pred ccccCCC-------hhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 154 FVLSAVS-------PEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 154 ~vl~~~~-------~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
--....+ ......++.++.++|+|||.+++.+..
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 3221111 145678999999999999999987644
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.03 E-value=9.3e-10 Score=107.20 Aligned_cols=131 Identities=14% Similarity=0.149 Sum_probs=95.0
Q ss_pred CCCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhc-C-CCCCCCceEEEEeecCCCccchhh
Q 008457 372 PTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTAN-L-KPPFLAKLITKRLEWGNRDHIEAI 447 (564)
Q Consensus 372 ~~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n-~-~~~~~~~i~~~~l~w~~~~~~~~~ 447 (564)
....++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..+ + +. .++.+...|..+.
T Consensus 95 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~---~~v~~~~~d~~~~------ 165 (280)
T 1i9g_A 95 GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP---DNWRLVVSDLADS------ 165 (280)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC---TTEEEECSCGGGC------
T ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC---CcEEEEECchHhc------
Confidence 34557889999999999888877764 3 569999999999999999999887 4 22 3566665544322
Q ss_pred hhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHH-cCCeEEEEcC
Q 008457 448 KEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ-CGFRLVDKWP 526 (564)
Q Consensus 448 ~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~g~~~~~~~~ 526 (564)
.+..++||+|++ +......+++.+.++| +|+| .+++...... ....+.+.+.+ .+|...++++
T Consensus 166 -~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L-~pgG--------~l~~~~~~~~-~~~~~~~~l~~~~~f~~~~~~~ 229 (280)
T 1i9g_A 166 -ELPDGSVDRAVL-----DMLAPWEVLDAVSRLL-VAGG--------VLMVYVATVT-QLSRIVEALRAKQCWTEPRAWE 229 (280)
T ss_dssp -CCCTTCEEEEEE-----ESSCGGGGHHHHHHHE-EEEE--------EEEEEESSHH-HHHHHHHHHHHHSSBCCCEEEC
T ss_pred -CCCCCceeEEEE-----CCcCHHHHHHHHHHhC-CCCC--------EEEEEeCCHH-HHHHHHHHHHhcCCcCCcEEEE
Confidence 123568999986 2345668899999999 9987 7766655432 22356666666 7888777775
Q ss_pred C
Q 008457 527 S 527 (564)
Q Consensus 527 ~ 527 (564)
.
T Consensus 230 ~ 230 (280)
T 1i9g_A 230 T 230 (280)
T ss_dssp C
T ss_pred E
Confidence 5
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-09 Score=107.72 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=88.8
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.+++|+..+++. +.+.+...|..+. +.+.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~---~~i~~~~~D~~~~-------~~~~ 284 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL---DKIKFIQGDATQL-------SQYV 284 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG---GGCEEEECCGGGG-------GGTC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC---CceEEEECChhhC-------Cccc
Confidence 34788999999999988888887654 38999999999999999999998864 4566666555332 2345
Q ss_pred CCccEEEEeceeeCCC-----C----hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEE
Q 008457 453 EGFEVILGTDVSYIPE-----A----ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD 523 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~-----~----~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~ 523 (564)
++||+|++ |..|... . +..+++.++++| ... .++++. ....+.+.+.+.||++.+
T Consensus 285 ~~fD~Ii~-npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~---------~~~i~~-----~~~~~~~~~~~~G~~~~~ 348 (373)
T 3tm4_A 285 DSVDFAIS-NLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKR---------GVFITT-----EKKAIEEAIAENGFEIIH 348 (373)
T ss_dssp SCEEEEEE-ECCCC------CCHHHHHHHHHHHHHHHE-EEE---------EEEEES-----CHHHHHHHHHHTTEEEEE
T ss_pred CCcCEEEE-CCCCCcccCcchhHHHHHHHHHHHHHHHc-CCe---------EEEEEC-----CHHHHHHHHHHcCCEEEE
Confidence 68999987 4455532 1 356777777777 321 333332 223456677788999988
Q ss_pred Ec
Q 008457 524 KW 525 (564)
Q Consensus 524 ~~ 525 (564)
..
T Consensus 349 ~~ 350 (373)
T 3tm4_A 349 HR 350 (373)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.6e-10 Score=109.24 Aligned_cols=121 Identities=22% Similarity=0.254 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
+.+..+.+++.......++.+|||+|||+|.++..++.....+|+++|+|+.+++.+++|+..+++. +++.+...||
T Consensus 106 ~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~---~~v~~~~~D~ 182 (284)
T 1nv8_A 106 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS---DRFFVRKGEF 182 (284)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT---TSEEEEESST
T ss_pred hhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CceEEEECcc
Confidence 3444555555543222256799999999998888777664569999999999999999999998864 4688888887
Q ss_pred CCCccchhhhhhcCCCc---cEEEEeceeeCC--------------------CChHHHHHHHH-HHhhccCCCCCCCCCc
Q 008457 439 GNRDHIEAIKEENNEGF---EVILGTDVSYIP--------------------EAILPLFATAK-ELTASSNKSLREDQQP 494 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~f---D~Ii~~d~~y~~--------------------~~~~~l~~~~~-~ll~~~~g~~~~~~~~ 494 (564)
.+. + . ++| |+|+++. .|.. .+-..+++.+. +.| +|+|
T Consensus 183 ~~~--~------~-~~f~~~D~IvsnP-Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l-~pgG-------- 243 (284)
T 1nv8_A 183 LEP--F------K-EKFASIEMILSNP-PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYD-TSGK-------- 243 (284)
T ss_dssp TGG--G------G-GGTTTCCEEEECC-CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCC-CTTC--------
T ss_pred hhh--c------c-cccCCCCEEEEcC-CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcC-CCCC--------
Confidence 642 1 1 367 9999762 2321 11126788888 999 8988
Q ss_pred EEEEEEe
Q 008457 495 AFILCHI 501 (564)
Q Consensus 495 ~~~~~~~ 501 (564)
.+++...
T Consensus 244 ~l~~e~~ 250 (284)
T 1nv8_A 244 IVLMEIG 250 (284)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 7776543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.4e-10 Score=103.19 Aligned_cols=131 Identities=16% Similarity=0.143 Sum_probs=87.9
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.++.+|||+|||+|.++..++... ..+|+++|+++.+++.+.+++..+.......++.+...|..+. ++..+
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l-------~~~~~ 98 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL-------PPLSG 98 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC-------CSCCC
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC-------CCCCC
Confidence 367899999999998888888765 5699999999998886554443322111124677776665542 12233
Q ss_pred CccEEEEeceee--------CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-------------CCh----h
Q 008457 454 GFEVILGTDVSY--------IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------VDE----P 508 (564)
Q Consensus 454 ~fD~Ii~~d~~y--------~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-------------~~~----~ 508 (564)
. |.|. +++ +..+...+++.+.++| +|+| .++++..... ... +
T Consensus 99 ~-d~v~---~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (218)
T 3mq2_A 99 V-GELH---VLMPWGSLLRGVLGSSPEMLRGMAAVC-RPGA--------SFLVALNLHAWRPSVPEVGEHPEPTPDSADE 165 (218)
T ss_dssp E-EEEE---EESCCHHHHHHHHTSSSHHHHHHHHTE-EEEE--------EEEEEEEGGGBTTBCGGGTTCCCCCHHHHHH
T ss_pred C-CEEE---EEccchhhhhhhhccHHHHHHHHHHHc-CCCc--------EEEEEeccccccccccccccCCccchHHHHH
Confidence 4 6665 222 2334488999999999 9988 7877653311 111 2
Q ss_pred HHHHHHHHcCCeEEEEc
Q 008457 509 SMLSAATQCGFRLVDKW 525 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~~ 525 (564)
.+...+.++||++.++.
T Consensus 166 ~l~~~l~~aGf~i~~~~ 182 (218)
T 3mq2_A 166 WLAPRYAEAGWKLADCR 182 (218)
T ss_dssp HHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHcCCCceeee
Confidence 35667888999999875
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.7e-10 Score=111.54 Aligned_cols=111 Identities=16% Similarity=0.282 Sum_probs=87.3
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCCC-----cEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCc
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYPD-----VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~-----~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
...++.+|||+|||+|.++..+++..+. .+++|+|+++.+++.|+.+....+.++.+.++|.... .+.++
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-----~~~~~ 201 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-----LLVDP 201 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-----CCCCC
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-----cccCC
Confidence 3456789999999999999998877533 7899999999999999987654444678889987542 24578
Q ss_pred eeEEEEcccccCCChhHH----------------HHHHHHHHhccCCCeEEEEEecC
Q 008457 147 IDIVTMVFVLSAVSPEKM----------------SLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~----------------~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
||+|+++-.+++++.++. ..+++++.+.|+|||++++..+.
T Consensus 202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 999999987766543321 26899999999999999887543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.6e-10 Score=103.23 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=83.7
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||+|||+|.++..+ +.+|+++|+++. .+.+...|..+. ++++++
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~-------------------~~~~~~~d~~~~-------~~~~~~ 115 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI----RNPVHCFDLASL-------------------DPRVTVCDMAQV-------PLEDES 115 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC----CSCEEEEESSCS-------------------STTEEESCTTSC-------SCCTTC
T ss_pred CCCCeEEEECCcCCHHHHHh----hccEEEEeCCCC-------------------CceEEEeccccC-------CCCCCC
Confidence 36789999999999665544 368999999987 122333333321 234568
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-CChhHHHHHHHHcCCeEEEEc
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-VDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~g~~~~~~~ 525 (564)
||+|+++.+++ ......+++.+.++| +|+| .++++..... .+...+.+.+.+.||+++++.
T Consensus 116 fD~v~~~~~l~-~~~~~~~l~~~~~~L-~~gG--------~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 116 VDVAVFCLSLM-GTNIRDFLEEANRVL-KPGG--------LLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp EEEEEEESCCC-SSCHHHHHHHHHHHE-EEEE--------EEEEEECGGGCSCHHHHHHHHHHTTEEEEEEE
T ss_pred EeEEEEehhcc-ccCHHHHHHHHHHhC-CCCe--------EEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEe
Confidence 99999999986 588999999999999 9988 7777655544 355678899999999998865
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.7e-09 Score=105.66 Aligned_cols=140 Identities=8% Similarity=-0.039 Sum_probs=105.2
Q ss_pred HHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 366 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 366 ~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.-+....+.....+|||+|||+|.++..++.+.+ .+++..|+ |.+++.+++++.... .+++++...|..++
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~----~~rv~~~~gD~~~~--- 240 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE----EEQIDFQEGDFFKD--- 240 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC------CCSEEEEESCTTTS---
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc----cCceeeecCccccC---
Confidence 3344444555778999999999988888887764 48999999 899999998876433 26788888876543
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--------------------
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAI--LPLFATAKELTASSNKSLREDQQPAFILCHIF-------------------- 502 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~--~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~-------------------- 502 (564)
+...+|+|+...++++..+- ..+++.+.+.| +|+| ++++....
T Consensus 241 ------~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al-~pgg--------~lli~e~~~~~~~~~~~~~~~~dl~ml~ 305 (353)
T 4a6d_A 241 ------PLPEADLYILARVLHDWADGKCSHLLERIYHTC-KPGG--------GILVIESLLDEDRRGPLLTQLYSLNMLV 305 (353)
T ss_dssp ------CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHC-CTTC--------EEEEEECCCCTTSCCCHHHHHHHHHHHH
T ss_pred ------CCCCceEEEeeeecccCCHHHHHHHHHHHHhhC-CCCC--------EEEEEEeeeCCCCCCCHHHHHHHHHHHH
Confidence 23468999999999987654 67899999999 9988 77766542
Q ss_pred ----ccCChhHHHHHHHHcCCeEEEEcCCC
Q 008457 503 ----RQVDEPSMLSAATQCGFRLVDKWPSK 528 (564)
Q Consensus 503 ----r~~~~~~~~~~~~~~g~~~~~~~~~~ 528 (564)
+..+..++.+.++++||+.++++..+
T Consensus 306 ~~~g~ert~~e~~~ll~~AGf~~v~v~~~~ 335 (353)
T 4a6d_A 306 QTEGQERTPTHYHMLLSSAGFRDFQFKKTG 335 (353)
T ss_dssp SSSCCCCCHHHHHHHHHHHTCEEEEEECCS
T ss_pred hCCCcCCCHHHHHHHHHHCCCceEEEEEcC
Confidence 11233467788899999999998653
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.02 E-value=7e-09 Score=99.39 Aligned_cols=141 Identities=11% Similarity=0.122 Sum_probs=84.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc---
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN--- 451 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~--- 451 (564)
++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..+++. +++.+...|..+. ..+ .+.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-~~~---~~~~~~ 137 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS---DLIKVVKVPQKTL-LMD---ALKEES 137 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTCS-STT---TSTTCC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC---ccEEEEEcchhhh-hhh---hhhccc
Confidence 57799999999998887777653 579999999999999999999998764 4577776664321 000 122
Q ss_pred CCCccEEEEeceeeCCC---------------ChHHHHHHHHHHhhccCCCCC------------CCCCcEEEEEEeecc
Q 008457 452 NEGFEVILGTDVSYIPE---------------AILPLFATAKELTASSNKSLR------------EDQQPAFILCHIFRQ 504 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~---------------~~~~l~~~~~~ll~~~~g~~~------------~~~~~~~~~~~~~r~ 504 (564)
+++||+|+++.+.+... ....++..+.++| +|+|.-. ......++ ......
T Consensus 138 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L-kpgG~l~~~~~~~~~~~~~l~~~g~~~-~~~~~~ 215 (254)
T 2h00_A 138 EIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIM-AEGGELEFVKRIIHDSLQLKKRLRWYS-CMLGKK 215 (254)
T ss_dssp SCCBSEEEECCCCC-------------------------CTTTTH-HHHTHHHHHHHHHHHHHHHGGGBSCEE-EEESST
T ss_pred CCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHE-ecCCEEEEEHHHHHHHHhcccceEEEE-ECCCCh
Confidence 25899999765544321 0113444444444 4444100 00011222 222233
Q ss_pred CChhHHHHHHHHcCCeEEEEc
Q 008457 505 VDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 505 ~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.....+.+.+++.||...++.
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~ 236 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYT 236 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEE
Confidence 333467788889999877664
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=8.5e-10 Score=103.55 Aligned_cols=111 Identities=17% Similarity=0.168 Sum_probs=80.3
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||||||+|..+..++... ..+|+++|+++.+++.+++|+..++.. +++.+...|..+ ....+.....
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~--~~~~~~~~~~ 131 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN---DRVEVRTGLALD--SLQQIENEKY 131 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCHHH--HHHHHHHTTC
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHH--HHHHHHhcCC
Confidence 367899999999998777777653 469999999999999999999988764 457776555421 1111111112
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
++||+|+..-. ......+++.+.++| +|+| .+++....
T Consensus 132 ~~fD~v~~d~~---~~~~~~~l~~~~~~L-~pgG--------~lv~~~~~ 169 (223)
T 3duw_A 132 EPFDFIFIDAD---KQNNPAYFEWALKLS-RPGT--------VIIGDNVV 169 (223)
T ss_dssp CCCSEEEECSC---GGGHHHHHHHHHHTC-CTTC--------EEEEESCS
T ss_pred CCcCEEEEcCC---cHHHHHHHHHHHHhc-CCCc--------EEEEeCCC
Confidence 57999985322 456788999999999 9988 66665443
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=102.63 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=84.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc--
Q 008457 376 AGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-- 451 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~-- 451 (564)
++.+|||||||+|..+..++.. ...+|+++|+++.+++.+++|+..+++. +++.+...|..+ .+..+.
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~-----~l~~~~~~ 129 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ---DKVTILNGASQD-----LIPQLKKK 129 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHHH-----HGGGTTTT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC---CceEEEECCHHH-----HHHHHHHh
Confidence 6789999999999777777764 2569999999999999999999998874 457776555421 111122
Q ss_pred --CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcC
Q 008457 452 --NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG 518 (564)
Q Consensus 452 --~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g 518 (564)
.++||+|+......+......++..+ ++| +|+| ++++..... .....+.+.+.+..
T Consensus 130 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~L-kpgG--------~lv~~~~~~-~~~~~~~~~l~~~~ 187 (221)
T 3u81_A 130 YDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLL-RKGT--------VLLADNVIV-PGTPDFLAYVRGSS 187 (221)
T ss_dssp SCCCCCSEEEECSCGGGHHHHHHHHHHT-TCC-CTTC--------EEEESCCCC-CCCHHHHHHHHHCT
T ss_pred cCCCceEEEEEcCCcccchHHHHHHHhc-ccc-CCCe--------EEEEeCCCC-cchHHHHHHHhhCC
Confidence 26899998643333222233455555 899 9988 666654443 33456777776653
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.4e-10 Score=113.22 Aligned_cols=140 Identities=11% Similarity=0.121 Sum_probs=100.5
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
..+...++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.++++....+ .++.+.+.|..... ...+++
T Consensus 99 ~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~---~~~~~~ 175 (456)
T 3m4x_A 99 TAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV---PHFSGF 175 (456)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH---HHHTTC
T ss_pred HHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh---hhcccc
Confidence 445567899999999999999999998743 4799999999999999998875444 46888888875432 112478
Q ss_pred eeEEEEcc------cccCCC-------h-------hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccc
Q 008457 147 IDIVTMVF------VLSAVS-------P-------EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISEN 206 (564)
Q Consensus 147 fD~V~~~~------vl~~~~-------~-------~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~ 206 (564)
||+|++.. ++.+-+ . .....+|.++.++|||||.|++++-.....
T Consensus 176 FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e--------------- 240 (456)
T 3m4x_A 176 FDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPE--------------- 240 (456)
T ss_dssp EEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGG---------------
T ss_pred CCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccc---------------
Confidence 99999843 222211 0 123478999999999999999876443221
Q ss_pred eeecCCCceeeccCHHHHHHHHHhCCCcEEEe
Q 008457 207 FYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
-+.+.+..++++.||+++.+
T Consensus 241 ------------Ene~vv~~~l~~~~~~l~~~ 260 (456)
T 3m4x_A 241 ------------ENEEIISWLVENYPVTIEEI 260 (456)
T ss_dssp ------------GTHHHHHHHHHHSSEEEECC
T ss_pred ------------cCHHHHHHHHHhCCCEEEec
Confidence 14566777777877776654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=111.16 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=95.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++..++.+|+++|+++.+++.+++|+..|++. .++.+...|..+. ...+ .....+|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~---~~v~~~~~d~~~~--~~~~-~~~~~~f 290 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE---DRMKFIVGSAFEE--MEKL-QKKGEKF 290 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHHHH--HHHH-HHTTCCE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEECCHHHH--HHHH-HhhCCCC
Confidence 77899999999998888888776779999999999999999999999873 2566665543211 1110 0125689
Q ss_pred cEEEEeceeeCC----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHH----HHHHHcCCeE
Q 008457 456 EVILGTDVSYIP----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML----SAATQCGFRL 521 (564)
Q Consensus 456 D~Ii~~d~~y~~----------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~~g~~~ 521 (564)
|+|++ |..+.. .....++..+.++| +|+| .++++........+.|. +.+.+.|..+
T Consensus 291 D~Vi~-dpP~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 360 (396)
T 2as0_A 291 DIVVL-DPPAFVQHEKDLKAGLRAYFNVNFAGLNLV-KDGG--------ILVTCSCSQHVDLQMFKDMIIAAGAKAGKFL 360 (396)
T ss_dssp EEEEE-CCCCSCSSGGGHHHHHHHHHHHHHHHHTTE-EEEE--------EEEEEECCTTSCHHHHHHHHHHHHHHTTEEE
T ss_pred CEEEE-CCCCCCCCHHHHHHHHHHHHHHHHHHHHhc-CCCc--------EEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 99986 444432 44677888899999 9988 78777776666654443 3444567666
Q ss_pred EEEc
Q 008457 522 VDKW 525 (564)
Q Consensus 522 ~~~~ 525 (564)
.-+.
T Consensus 361 ~~i~ 364 (396)
T 2as0_A 361 KMLE 364 (396)
T ss_dssp EESS
T ss_pred EEEe
Confidence 5444
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.7e-09 Score=111.04 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=87.5
Q ss_pred hccCC--CCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCC
Q 008457 70 YFSGA--GRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 70 ~l~~~--~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
.+... ++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++....+ .++.+++.|+..... ...+
T Consensus 110 ~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~---~~~~ 186 (479)
T 2frx_A 110 ALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA---AVPE 186 (479)
T ss_dssp HHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH---HSTT
T ss_pred HhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh---hccc
Confidence 44445 889999999999999999998853 5799999999999999998875444 478888888864321 1346
Q ss_pred ceeEEEEc------ccccC-------CChh-------HHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 146 SIDIVTMV------FVLSA-------VSPE-------KMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 146 ~fD~V~~~------~vl~~-------~~~~-------~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
+||+|++. .++.+ ++++ ....+|.++.++|||||+|++++-..
T Consensus 187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 89999982 12222 2211 24578999999999999999976543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-09 Score=104.31 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=84.8
Q ss_pred CCCCCeEEEEcCCc------cccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccCCCeeE-EEecCCcccccCCCCC
Q 008457 73 GAGRKDVLEVGCGA------GNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVST-FVCDLISDDLSRQISP 144 (564)
Q Consensus 73 ~~~~~~VLDiGcG~------G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~-~~~d~~~~~~~~~~~~ 144 (564)
..++.+|||+|||+ |. ..+++..+ +.+|+|+|+|+. . .++++ +++|+.... + .
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v----~~v~~~i~gD~~~~~----~-~ 121 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V----SDADSTLIGDCATVH----T-A 121 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B----CSSSEEEESCGGGCC----C-S
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C----CCCEEEEECccccCC----c-c
Confidence 36789999999955 55 44555554 689999999997 1 25788 999986532 2 3
Q ss_pred CceeEEEEcccccC--------C-ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCce
Q 008457 145 SSIDIVTMVFVLSA--------V-SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTR 215 (564)
Q Consensus 145 ~~fD~V~~~~vl~~--------~-~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (564)
++||+|+++...++ . .......+++++.++|||||.|++..+...
T Consensus 122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-------------------------- 175 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-------------------------- 175 (290)
T ss_dssp SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS--------------------------
T ss_pred CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC--------------------------
Confidence 68999999754221 1 123456899999999999999999754321
Q ss_pred eeccCHHHHHHHHHhCCCcEEEee
Q 008457 216 AFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 216 ~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
..+++.+++++.||..+...
T Consensus 176 ----~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 176 ----WNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp ----CCHHHHHHHTTEEEEEEEEE
T ss_pred ----CHHHHHHHHHHcCCcEEEEE
Confidence 23477788999999766554
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.9e-09 Score=97.57 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=93.3
Q ss_pred HHHHH---hcCCCCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 364 MAAVL---ARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 364 l~~~l---~~~~~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
++..+ .....+.++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..+ .++.+...|.
T Consensus 58 ~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~------~~v~~~~~d~ 131 (227)
T 1g8a_A 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER------RNIVPILGDA 131 (227)
T ss_dssp HHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC------TTEEEEECCT
T ss_pred HHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc------CCCEEEEccC
Confidence 34455 33334557889999999999888888765 3 369999999999999999998764 3466666655
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC----hh----HH
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD----EP----SM 510 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~----~~----~~ 510 (564)
.+... +.. ..++||+|++ |.. .......+++.+.++| +|+| .++++...+... .. .-
T Consensus 132 ~~~~~---~~~-~~~~~D~v~~-~~~-~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~ 196 (227)
T 1g8a_A 132 TKPEE---YRA-LVPKVDVIFE-DVA-QPTQAKILIDNAEVYL-KRGG--------YGMIAVKSRSIDVTKEPEQVFREV 196 (227)
T ss_dssp TCGGG---GTT-TCCCEEEEEE-CCC-STTHHHHHHHHHHHHE-EEEE--------EEEEEEEGGGTCTTSCHHHHHHHH
T ss_pred CCcch---hhc-ccCCceEEEE-CCC-CHhHHHHHHHHHHHhc-CCCC--------EEEEEEecCCCCCCCChhhhhHHH
Confidence 43211 111 1358999995 443 3333345599999999 9988 777775443221 11 12
Q ss_pred HHHHHHcCCeEEEEcCC
Q 008457 511 LSAATQCGFRLVDKWPS 527 (564)
Q Consensus 511 ~~~~~~~g~~~~~~~~~ 527 (564)
+..+.+. |++.+....
T Consensus 197 l~~l~~~-f~~~~~~~~ 212 (227)
T 1g8a_A 197 ERELSEY-FEVIERLNL 212 (227)
T ss_dssp HHHHHTT-SEEEEEEEC
T ss_pred HHHHHhh-ceeeeEecc
Confidence 3334555 988887644
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.9e-10 Score=108.16 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=77.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+.+|||||||+|..+..+++. + .+|+++|+++.+++.|+++... ...+++++.+|.... . ++||
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~------~-~~fD 141 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD------I-KKYD 141 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC------C-CCEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH------H-hhCC
Confidence 45689999999999999999887 6 8999999999999999987643 135788888887532 2 7899
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+|++.. + ++..+++.+++.|+|||++++.
T Consensus 142 ~Ii~d~-----~--dp~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 142 LIFCLQ-----E--PDIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp EEEESS-----C--CCHHHHHHHHTTEEEEEEEEEE
T ss_pred EEEECC-----C--ChHHHHHHHHHhcCCCcEEEEE
Confidence 999962 1 2335999999999999999985
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=106.15 Aligned_cols=141 Identities=17% Similarity=0.063 Sum_probs=93.8
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
++.+++..+. ..++.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|+..++.. ++.+...|
T Consensus 106 ~s~l~~~~l~----~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~----~v~~~~~D 177 (315)
T 1ixk_A 106 SSMYPPVALD----PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL----NVILFHSS 177 (315)
T ss_dssp HHHHHHHHHC----CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC----SEEEESSC
T ss_pred HHHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC----eEEEEECC
Confidence 3444555542 3477899999999998888887753 469999999999999999999988763 46655444
Q ss_pred cCCCccchhhhhhcCCCccEEEEece------eeCCC----------------ChHHHHHHHHHHhhccCCCCCCCCCcE
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDV------SYIPE----------------AILPLFATAKELTASSNKSLREDQQPA 495 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~------~y~~~----------------~~~~l~~~~~~ll~~~~g~~~~~~~~~ 495 (564)
..+. .. ..++||+|++.-. +.... ....+++.+.++| +|+| .
T Consensus 178 ~~~~------~~-~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~L-kpGG--------~ 241 (315)
T 1ixk_A 178 SLHI------GE-LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL-KPGG--------I 241 (315)
T ss_dssp GGGG------GG-GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHE-EEEE--------E
T ss_pred hhhc------cc-ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhC-CCCC--------E
Confidence 3221 11 2468999986322 11111 0158899999999 9988 6
Q ss_pred EEEEEee--ccCChhHHHHHHHHcCCeEEEE
Q 008457 496 FILCHIF--RQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 496 ~~~~~~~--r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
++++... ..+.+......+++.||+++.+
T Consensus 242 lv~stcs~~~~Ene~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 242 LVYSTCSLEPEENEFVIQWALDNFDVELLPL 272 (315)
T ss_dssp EEEEESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred EEEEeCCCChHHhHHHHHHHHhcCCCEEecC
Confidence 6665432 2333333445566788877654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=104.31 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=80.2
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
+.++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..|++. ++.+...|..+. +. .
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~----~~~~~~~d~~~~-------~~-~ 184 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN----NVIPILADNRDV-------EL-K 184 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS----SEEEEESCGGGC-------CC-T
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CEEEEECChHHc-------Cc-c
Confidence 3478899999999998888888764 569999999999999999999999873 455554443321 11 4
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
++||+|++..+ + ....++..+.++| +|+| .++++....
T Consensus 185 ~~~D~Vi~d~p-~---~~~~~l~~~~~~L-kpgG--------~l~~s~~~~ 222 (272)
T 3a27_A 185 DVADRVIMGYV-H---KTHKFLDKTFEFL-KDRG--------VIHYHETVA 222 (272)
T ss_dssp TCEEEEEECCC-S---SGGGGHHHHHHHE-EEEE--------EEEEEEEEE
T ss_pred CCceEEEECCc-c---cHHHHHHHHHHHc-CCCC--------EEEEEEcCc
Confidence 58999986543 2 6778899999999 9987 676665544
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.99 E-value=7.8e-10 Score=105.84 Aligned_cols=126 Identities=12% Similarity=0.061 Sum_probs=80.6
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc--C-CCEEEEEcCChhHHHHHHHHHHhc---CCCCC----------
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--S-ADLVVATDGDSIALDLLAQNVTAN---LKPPF---------- 427 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~--~-~~~v~~tD~~~~~l~~~~~n~~~n---~~~~~---------- 427 (564)
+...+.......++.+|||+|||+|.++..++.. . ..+|+++|+|+.+++.+++|+..+ ++...
T Consensus 39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (250)
T 1o9g_A 39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER 118 (250)
T ss_dssp HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhh
Confidence 3344443322235679999999999888777765 2 468999999999999999998876 32100
Q ss_pred ------------CCceE-------------EEEeecCCCccchhhhhh-cCCCccEEEEeceeeCCC---------ChHH
Q 008457 428 ------------LAKLI-------------TKRLEWGNRDHIEAIKEE-NNEGFEVILGTDVSYIPE---------AILP 472 (564)
Q Consensus 428 ------------~~~i~-------------~~~l~w~~~~~~~~~~~~-~~~~fD~Ii~~d~~y~~~---------~~~~ 472 (564)
..++. +...|+.+... .... ...+||+|+++.+..... ....
T Consensus 119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~ 195 (250)
T 1o9g_A 119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRA---LSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG 195 (250)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGG---HHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred cccccchhhhhhhhhhhhhccccccccccceeecccccccc---cccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence 00033 55555443200 0000 234899999775433322 2458
Q ss_pred HHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 473 LFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 473 l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
+++.+.++| +|+| .++++..
T Consensus 196 ~l~~~~~~L-kpgG--------~l~~~~~ 215 (250)
T 1o9g_A 196 LLRSLASAL-PAHA--------VIAVTDR 215 (250)
T ss_dssp HHHHHHHHS-CTTC--------EEEEEES
T ss_pred HHHHHHHhc-CCCc--------EEEEeCc
Confidence 999999999 9988 7777433
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=105.61 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=80.7
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+.+++..... ++.+|||+|||+|.++..++.. +.+|+++|+++.+++.++++... . +...|..+.
T Consensus 44 ~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~--------~--~~~~d~~~~-- 108 (260)
T 2avn_A 44 IGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGVK--------N--VVEAKAEDL-- 108 (260)
T ss_dssp HHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTCS--------C--EEECCTTSC--
T ss_pred HHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcCC--------C--EEECcHHHC--
Confidence 3444444322 6789999999999777777665 46899999999999999987531 1 233333221
Q ss_pred chhhhhhcCCCccEEEEeceeeC-CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 444 IEAIKEENNEGFEVILGTDVSYI-PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
++++++||+|++..++++ ..+...+++.+.++| +|+| .++++...+
T Consensus 109 -----~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l~~~~~~~ 155 (260)
T 2avn_A 109 -----PFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVL-VPDG--------LLIATVDNF 155 (260)
T ss_dssp -----CSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHE-EEEE--------EEEEEEEBH
T ss_pred -----CCCCCCEEEEEEcchhhhccccHHHHHHHHHHHc-CCCe--------EEEEEeCCh
Confidence 234578999999876654 366999999999999 9988 777766543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-09 Score=99.41 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=74.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
++.+|||||||+|..+..++... ..+|+++|+++++++.+++|+..++... +++.+..-|. .+.+..+..+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~--~~i~~~~gda-----~~~l~~~~~~ 128 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSP--SRVRFLLSRP-----LDVMSRLAND 128 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCG--GGEEEECSCH-----HHHGGGSCTT
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc--CcEEEEEcCH-----HHHHHHhcCC
Confidence 34599999999997777666642 5799999999999999999999887631 3566654322 2222233357
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+||+|+.. . .......+++.+.++| +|+|
T Consensus 129 ~fD~V~~d-~--~~~~~~~~l~~~~~~L-kpGG 157 (221)
T 3dr5_A 129 SYQLVFGQ-V--SPMDLKALVDAAWPLL-RRGG 157 (221)
T ss_dssp CEEEEEEC-C--CTTTHHHHHHHHHHHE-EEEE
T ss_pred CcCeEEEc-C--cHHHHHHHHHHHHHHc-CCCc
Confidence 99999853 2 3566788999999999 9988
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.99 E-value=9.5e-10 Score=112.63 Aligned_cols=113 Identities=18% Similarity=0.064 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCC--CeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET--RVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~--~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++....+. +++++++|+........-..++||+|+
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 37889999999999999999987 235899999999999999988764442 789999998543110001256899999
Q ss_pred EcccccCCCh-------hHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 152 MVFVLSAVSP-------EKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 152 ~~~vl~~~~~-------~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+.--....+. .....++.++.++|+|||.+++.+..
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 9543222211 45778999999999999999887644
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=99.92 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=90.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
.++..|.+.+.....+.++.+|||||||+|+++..++.. ..+|+++|+++.. . ...+.+...|.
T Consensus 8 Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~----~~~v~~~~~D~ 71 (191)
T 3dou_A 8 RAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------E----IAGVRFIRCDI 71 (191)
T ss_dssp HHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------C----CTTCEEEECCT
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------c----CCCeEEEEccc
Confidence 456677777666554557899999999999888877776 6799999998741 1 13567777776
Q ss_pred CCCccchhhhhhcC----CCccEEEEeceeeCC------------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 439 GNRDHIEAIKEENN----EGFEVILGTDVSYIP------------EAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 439 ~~~~~~~~~~~~~~----~~fD~Ii~~d~~y~~------------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
.+......+..... ++||+|++. ...+. .....+++.+.++| +|+| .+++..-
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~D~Vlsd-~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L-kpGG--------~lv~k~~- 140 (191)
T 3dou_A 72 FKETIFDDIDRALREEGIEKVDDVVSD-AMAKVSGIPSRDHAVSYQIGQRVMEIAVRYL-RNGG--------NVLLKQF- 140 (191)
T ss_dssp TSSSHHHHHHHHHHHHTCSSEEEEEEC-CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE-EEEE--------EEEEEEE-
T ss_pred cCHHHHHHHHHHhhcccCCcceEEecC-CCcCCCCCcccCHHHHHHHHHHHHHHHHHHc-cCCC--------EEEEEEc-
Confidence 65432222222111 489999863 32211 12356788889999 9988 6665433
Q ss_pred ccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 503 RQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 503 r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
+......+...++ ..|.-+++...
T Consensus 141 ~~~~~~~~~~~l~-~~F~~v~~~kP 164 (191)
T 3dou_A 141 QGDMTNDFIAIWR-KNFSSYKISKP 164 (191)
T ss_dssp CSTHHHHHHHHHG-GGEEEEEEECC
T ss_pred CCCCHHHHHHHHH-HhcCEEEEECC
Confidence 3333445666664 45777766644
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.6e-10 Score=117.13 Aligned_cols=111 Identities=19% Similarity=0.263 Sum_probs=84.8
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
.+.+.+.......++.+|||||||+|.++..++..+..+|+++|+++ +++.+++|+..|++. .++.+...|+.+..
T Consensus 145 ~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~---~~v~~~~~d~~~~~ 220 (480)
T 3b3j_A 145 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT---DRIVVIPGKVEEVS 220 (480)
T ss_dssp HHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCT---TTEEEEESCTTTCC
T ss_pred HHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCC---CcEEEEECchhhCc
Confidence 34555555555557889999999999888877776667999999988 999999999998874 57888888776431
Q ss_pred cchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
+ +++||+|++..++|+. +.....+..+.++| +|+|
T Consensus 221 -------~-~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~L-kpgG 257 (480)
T 3b3j_A 221 -------L-PEQVDIIISEPMGYMLFNERMLESYLHAKKYL-KPSG 257 (480)
T ss_dssp -------C-SSCEEEEECCCCHHHHTCHHHHHHHHHGGGGE-EEEE
T ss_pred -------c-CCCeEEEEEeCchHhcCcHHHHHHHHHHHHhc-CCCC
Confidence 1 2589999987666653 33455666778899 9988
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=103.13 Aligned_cols=100 Identities=14% Similarity=0.091 Sum_probs=76.9
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.++.+|||||||+|..+..++... ..+|+++|+++.+++.+++|+..+++. +++.+...|..+. +.....+
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-----~~~~~~~ 141 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE---NQVRIIEGNALEQ-----FENVNDK 141 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT---TTEEEEESCGGGC-----HHHHTTS
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECCHHHH-----HHhhccC
Confidence 367899999999997777776643 579999999999999999999988764 4677766554321 1101257
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+||+|++. ........+++.+.++| +|+|
T Consensus 142 ~fD~V~~~---~~~~~~~~~l~~~~~~L-kpgG 170 (232)
T 3ntv_A 142 VYDMIFID---AAKAQSKKFFEIYTPLL-KHQG 170 (232)
T ss_dssp CEEEEEEE---TTSSSHHHHHHHHGGGE-EEEE
T ss_pred CccEEEEc---CcHHHHHHHHHHHHHhc-CCCe
Confidence 99999843 34667889999999999 9988
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=101.30 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=81.5
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+.......++.+|||+|||+|.++..++...+ .+|+++|+++.+++.+++++..++. .++.+...|.... .
T Consensus 68 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~--~ 141 (215)
T 2yxe_A 68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY----DNVIVIVGDGTLG--Y 141 (215)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC----TTEEEEESCGGGC--C
T ss_pred HHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCeEEEECCcccC--C
Confidence 333333455788999999999988877777653 6999999999999999999988765 3466665554211 1
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
...++||+|+++.++.+.. +.+.++| +|+| .+++.....
T Consensus 142 -----~~~~~fD~v~~~~~~~~~~------~~~~~~L-~pgG--------~lv~~~~~~ 180 (215)
T 2yxe_A 142 -----EPLAPYDRIYTTAAGPKIP------EPLIRQL-KDGG--------KLLMPVGRY 180 (215)
T ss_dssp -----GGGCCEEEEEESSBBSSCC------HHHHHTE-EEEE--------EEEEEESSS
T ss_pred -----CCCCCeeEEEECCchHHHH------HHHHHHc-CCCc--------EEEEEECCC
Confidence 0145899999988876543 5888999 9988 777776544
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-09 Score=107.26 Aligned_cols=131 Identities=8% Similarity=0.035 Sum_probs=92.7
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.++.+|||+| |+|.++..++..+. .+|+++|+++.+++.+++|+..+++ .++.+...|..+. + .....+
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~----~~v~~~~~D~~~~--l---~~~~~~ 240 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY----EDIEIFTFDLRKP--L---PDYALH 240 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC----CCEEEECCCTTSC--C---CTTTSS
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCEEEEEChhhhh--c---hhhccC
Confidence 3688999999 99988888877665 7999999999999999999999876 2577776665431 1 011235
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEE-EEEEeeccCCh---hHHHHHHH-HcCCeEEEEc
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAF-ILCHIFRQVDE---PSMLSAAT-QCGFRLVDKW 525 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~-~~~~~~r~~~~---~~~~~~~~-~~g~~~~~~~ 525 (564)
+||+|++. ..|.......+++.+.++| +|+| ++ +++...+..+. ..+.+.+. ..|+.+..++
T Consensus 241 ~fD~Vi~~-~p~~~~~~~~~l~~~~~~L-kpgG--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 307 (373)
T 2qm3_A 241 KFDTFITD-PPETLEAIRAFVGRGIATL-KGPR--------CAGYFGITRRESSLDKWREIQKLLLNEFNVVITDII 307 (373)
T ss_dssp CBSEEEEC-CCSSHHHHHHHHHHHHHTB-CSTT--------CEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred CccEEEEC-CCCchHHHHHHHHHHHHHc-ccCC--------eEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhh
Confidence 89999964 4454434688899999999 9976 33 44433322333 23445565 7899887664
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-09 Score=109.06 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=81.0
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
.+.+...++.+|||+|||+|.++..|++. +.+|+|+|+|+.+++.|+++....+ .+++|+++|+.......++++++
T Consensus 279 ~~~l~~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~ 356 (433)
T 1uwv_A 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 (433)
T ss_dssp HHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTC
T ss_pred HHhhcCCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCC
Confidence 34454567889999999999999999987 6799999999999999998875443 47999999986532112345678
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
||+|+++---... ..+++.+.+ ++|++.++++
T Consensus 357 fD~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 357 FDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp CSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEE
T ss_pred CCEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEE
Confidence 9999985332222 235555543 7899998886
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.3e-09 Score=104.60 Aligned_cols=169 Identities=14% Similarity=0.172 Sum_probs=104.7
Q ss_pred CCCeEEEEcCCccccHHHHHH--------hC-------CCcEEEEEeCChHHHHHHHhcccccC-------------CCe
Q 008457 75 GRKDVLEVGCGAGNTIFPLIA--------AY-------PDVFVYACDFSPRAVNLVMTHKDFTE-------------TRV 126 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~--------~~-------~~~~v~~iD~s~~~l~~a~~~~~~~~-------------~~i 126 (564)
...+|+|+|||+|.++..+.. .+ |..+|..-|+........-+...... .+-
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 368999999999999987722 22 67899999987765433332222110 011
Q ss_pred eEEEecCCcccccCCCCCCceeEEEEcccccCCC--h----------------------------------hHHHHHHHH
Q 008457 127 STFVCDLISDDLSRQISPSSIDIVTMVFVLSAVS--P----------------------------------EKMSLVLQN 170 (564)
Q Consensus 127 ~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~--~----------------------------------~~~~~~l~~ 170 (564)
-|+.+.-. .-....+|+++||+|+++.+|||++ + .|...+|+.
T Consensus 132 ~f~~gvpg-SFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 132 YFVAGVPG-SFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp SEEEEEES-CTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCh-hhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23333221 1122356899999999999999996 1 166778999
Q ss_pred HHhccCCCeEEEEEecCCCchhh------hhhc-cc----cccc-ccce----eecCCCceeeccCHHHHHHHHH-hCCC
Q 008457 171 IKKVLKPTGYVLFRDYAIGDLAQ------ERLT-GK----DQKI-SENF----YVRGDGTRAFYFSNDFLTSLFK-ENGF 233 (564)
Q Consensus 171 ~~r~LkpgG~lii~~~~~~~~~~------~~~~-~~----~~~~-~~~~----~~~~~~~~~~~~~~~~l~~~l~-~aGf 233 (564)
.++.|+|||.++++..+.++... .... .. ...+ .++. ....-....|+.+.++++..++ +.||
T Consensus 211 ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F 290 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSF 290 (374)
T ss_dssp HHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSE
T ss_pred HHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCc
Confidence 99999999999998776654210 0000 00 0000 0000 0000122345679999999998 5999
Q ss_pred cEEEeeeeecc
Q 008457 234 DVEELGLCCKQ 244 (564)
Q Consensus 234 ~~~~~~~~~~~ 244 (564)
.+..+.....+
T Consensus 291 ~I~~le~~~~~ 301 (374)
T 3b5i_A 291 AIDKLVVYKGG 301 (374)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEEeec
Confidence 99887765433
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-09 Score=101.19 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=80.4
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
...+.......++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++|+..++ ++.+...|..+. .
T Consensus 59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~------~v~~~~~d~~~~--~ 129 (231)
T 1vbf_A 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN------NIKLILGDGTLG--Y 129 (231)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS------SEEEEESCGGGC--C
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC------CeEEEECCcccc--c
Confidence 3344433345578899999999998887777765 799999999999999999987653 456665554321 1
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
...++||+|++..++++.. +.+.++| +|+| .+++.....
T Consensus 130 -----~~~~~fD~v~~~~~~~~~~------~~~~~~L-~pgG--------~l~~~~~~~ 168 (231)
T 1vbf_A 130 -----EEEKPYDRVVVWATAPTLL------CKPYEQL-KEGG--------IMILPIGVG 168 (231)
T ss_dssp -----GGGCCEEEEEESSBBSSCC------HHHHHTE-EEEE--------EEEEEECSS
T ss_pred -----ccCCCccEEEECCcHHHHH------HHHHHHc-CCCc--------EEEEEEcCC
Confidence 1246899999988876543 4688899 9988 777776544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-10 Score=110.27 Aligned_cols=98 Identities=16% Similarity=0.062 Sum_probs=75.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++|+..+++. .++.+...|+.+. ...++|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~--------~~~~~~ 145 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIA---DKIEFICGDFLLL--------ASFLKA 145 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHHHH--------GGGCCC
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCC---cCeEEEECChHHh--------cccCCC
Confidence 67899999999998888887765 79999999999999999999988763 3577766554321 134699
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
|+|++..++.+.......+..+.++| +|+|
T Consensus 146 D~v~~~~~~~~~~~~~~~~~~~~~~L-~pgG 175 (241)
T 3gdh_A 146 DVVFLSPPWGGPDYATAETFDIRTMM-SPDG 175 (241)
T ss_dssp SEEEECCCCSSGGGGGSSSBCTTTSC-SSCH
T ss_pred CEEEECCCcCCcchhhhHHHHHHhhc-CCcc
Confidence 99998776666555555666677778 8776
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=102.92 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=80.9
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc-
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN- 451 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~- 451 (564)
.++.+|||||||+|..+..++... ..+|+++|+++.+++.+++|+..++.. +++.+...|..+ .+..+.
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~-----~l~~~~~ 133 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD---QRVTLREGPALQ-----SLESLGE 133 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT---TTEEEEESCHHH-----HHHTCCS
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHH-----HHHhcCC
Confidence 367899999999997777777653 569999999999999999999988874 467776554321 111121
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
.++||+|++ |. .......+++.+.++| +|+| .+++....
T Consensus 134 ~~~fD~V~~-d~--~~~~~~~~l~~~~~~L-kpGG--------~lv~~~~~ 172 (248)
T 3tfw_A 134 CPAFDLIFI-DA--DKPNNPHYLRWALRYS-RPGT--------LIIGDNVV 172 (248)
T ss_dssp CCCCSEEEE-CS--CGGGHHHHHHHHHHTC-CTTC--------EEEEECCS
T ss_pred CCCeEEEEE-CC--chHHHHHHHHHHHHhc-CCCe--------EEEEeCCC
Confidence 348999986 33 3556788999999999 9988 77765444
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-09 Score=99.67 Aligned_cols=126 Identities=14% Similarity=0.084 Sum_probs=90.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
...+|||||||+|.++..++.. ...+|+++|+|+.+++.++.|+..|+.. ..+...|.... .+.++
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-----~~~~v~D~~~~--------~p~~~ 198 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-----HRTNVADLLED--------RLDEP 198 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-----EEEEECCTTTS--------CCCSC
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-----ceEEEeeeccc--------CCCCC
Confidence 4569999999999888777765 4669999999999999999999999863 45554544322 35679
Q ss_pred ccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----cCCh-----hHHHHHHHHcCCeEE
Q 008457 455 FEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----QVDE-----PSMLSAATQCGFRLV 522 (564)
Q Consensus 455 fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-----~~~~-----~~~~~~~~~~g~~~~ 522 (564)
||+|++..++..-+ .-..++ .+-+.| +++ .++++++.| .... ..|...+.+.|+.+.
T Consensus 199 ~DvaL~lkti~~Le~q~kg~g~-~ll~aL-~~~---------~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~ 267 (281)
T 3lcv_B 199 ADVTLLLKTLPCLETQQRGSGW-EVIDIV-NSP---------NIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQ 267 (281)
T ss_dssp CSEEEETTCHHHHHHHSTTHHH-HHHHHS-SCS---------EEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEE
T ss_pred cchHHHHHHHHHhhhhhhHHHH-HHHHHh-CCC---------CEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCcee
Confidence 99999998876632 233445 566677 554 588888884 3332 245555677899887
Q ss_pred EEc
Q 008457 523 DKW 525 (564)
Q Consensus 523 ~~~ 525 (564)
++-
T Consensus 268 ~~~ 270 (281)
T 3lcv_B 268 RLE 270 (281)
T ss_dssp EEE
T ss_pred eee
Confidence 765
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.3e-09 Score=108.16 Aligned_cols=143 Identities=15% Similarity=0.106 Sum_probs=97.8
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
.+..+.+++.......++.+|||||||+|.++..++.. ..+|+++|+++.+++.+++|+..|++ .++.+...|+.
T Consensus 270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~----~~v~f~~~d~~ 344 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL----QNVTFYHENLE 344 (433)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC----CSEEEEECCTT
T ss_pred HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCC----CceEEEECCHH
Confidence 34555666555434456789999999999888877766 67999999999999999999999886 36788777776
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCC
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF 519 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~ 519 (564)
+.. ..+ ++..++||+|++ |..|... ..+++.+.. + +|++ .+|++....... .-...+.+.|+
T Consensus 345 ~~l--~~~-~~~~~~fD~Vv~-dPPr~g~--~~~~~~l~~-~-~p~~--------ivyvsc~p~tla--rd~~~l~~~Gy 406 (433)
T 1uwv_A 345 EDV--TKQ-PWAKNGFDKVLL-DPARAGA--AGVMQQIIK-L-EPIR--------IVYVSCNPATLA--RDSEALLKAGY 406 (433)
T ss_dssp SCC--SSS-GGGTTCCSEEEE-CCCTTCC--HHHHHHHHH-H-CCSE--------EEEEESCHHHHH--HHHHHHHHTTC
T ss_pred HHh--hhh-hhhcCCCCEEEE-CCCCccH--HHHHHHHHh-c-CCCe--------EEEEECChHHHH--hhHHHHHHCCc
Confidence 421 110 234568999885 6666543 356665554 4 5544 777765444322 22455567899
Q ss_pred eEEEEc
Q 008457 520 RLVDKW 525 (564)
Q Consensus 520 ~~~~~~ 525 (564)
++.++.
T Consensus 407 ~~~~~~ 412 (433)
T 1uwv_A 407 TIARLA 412 (433)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998864
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-09 Score=105.26 Aligned_cols=111 Identities=17% Similarity=0.058 Sum_probs=82.0
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
...+.......++.+|||+|||+|.++..++..++ .+|+++|+++++++.+++|+..++.. ++.+...|..+.
T Consensus 64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~----~v~~~~~d~~~~- 138 (317)
T 1dl5_A 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE----NVIFVCGDGYYG- 138 (317)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEESCGGGC-
T ss_pred HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CeEEEECChhhc-
Confidence 44444434455788999999999988877776543 47999999999999999999988763 477766665432
Q ss_pred cchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
. ...++||+|++..++.+.. +.+.++| +|+| .+++...
T Consensus 139 -~-----~~~~~fD~Iv~~~~~~~~~------~~~~~~L-kpgG--------~lvi~~~ 176 (317)
T 1dl5_A 139 -V-----PEFSPYDVIFVTVGVDEVP------ETWFTQL-KEGG--------RVIVPIN 176 (317)
T ss_dssp -C-----GGGCCEEEEEECSBBSCCC------HHHHHHE-EEEE--------EEEEEBC
T ss_pred -c-----ccCCCeEEEEEcCCHHHHH------HHHHHhc-CCCc--------EEEEEEC
Confidence 1 1236899999888776543 6788899 9988 7776644
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=106.50 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=83.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC---CCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP---FLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~---~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
++.+|||||||+|.++..++.....+|+++|+++.+++.++++...+.... ...++.+...|..+....+.+ +...
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKF-RDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTC-SSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhc-ccCC
Confidence 677999999999988887777667799999999999999999887643100 113567776666543210000 0123
Q ss_pred CCccEEEEeceeeCC----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 453 EGFEVILGTDVSYIP----EAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~----~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
++||+|+++.++.+. .....+++.+.++| +|+| .++++..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L-kpgG--------~li~~~~ 156 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERL-SPGG--------YFIGTTP 156 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTE-EEEE--------EEEEEEE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHh-CCCc--------EEEEecC
Confidence 589999999988654 34578999999999 9988 7777655
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.92 E-value=8.5e-09 Score=98.28 Aligned_cols=127 Identities=9% Similarity=0.058 Sum_probs=85.1
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhc--------CCCCCCCceEEEEeecCCCccch
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTAN--------LKPPFLAKLITKRLEWGNRDHIE 445 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n--------~~~~~~~~i~~~~l~w~~~~~~~ 445 (564)
.++.+|||+|||+|.++..++..++ .+|+++|+++.+++.+++|+..+ +. .++.+...|..+. +.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~----~nv~~~~~D~~~~--l~ 121 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF----QNINVLRGNAMKF--LP 121 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT----TTEEEEECCTTSC--GG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC----CcEEEEeccHHHH--HH
Confidence 3677999999999988888887764 48999999999999999998876 33 3577766655431 11
Q ss_pred hhhhhcCCCccEEEEec--eeeCC------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHc
Q 008457 446 AIKEENNEGFEVILGTD--VSYIP------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC 517 (564)
Q Consensus 446 ~~~~~~~~~fD~Ii~~d--~~y~~------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 517 (564)
. .+..+.+|.|+... ..+.. .....+++.+.++| +|+| .+++........ ..+.+.+...
T Consensus 122 ~--~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~L-kpgG--------~l~~~td~~~~~-~~~~~~~~~~ 189 (246)
T 2vdv_E 122 N--FFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVL-KEGG--------VVYTITDVKDLH-EWMVKHLEEH 189 (246)
T ss_dssp G--TSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHE-EEEE--------EEEEEESCHHHH-HHHHHHHHHS
T ss_pred H--hccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHc-CCCC--------EEEEEeccHHHH-HHHHHHHHhC
Confidence 0 13456899887442 11100 01268999999999 9988 777754333211 1234455566
Q ss_pred CC
Q 008457 518 GF 519 (564)
Q Consensus 518 g~ 519 (564)
|+
T Consensus 190 ~~ 191 (246)
T 2vdv_E 190 PL 191 (246)
T ss_dssp TT
T ss_pred cC
Confidence 64
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.4e-09 Score=105.79 Aligned_cols=98 Identities=13% Similarity=0.208 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++.. ++ .+.+|+++|+|+.+++.|+++....+ .+++++++|+... . ++||+|+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~------~-~~fD~Vi 263 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV------D-VKGNRVI 263 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC------C-CCEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh------c-CCCcEEE
Confidence 4788999999999999998 76 37899999999999999998875444 4799999998642 2 7899999
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+.-. + ....++..+.++|+|||.+++.+..
T Consensus 264 ~dpP--~----~~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 264 MNLP--K----FAHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp ECCT--T----TGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ECCc--H----hHHHHHHHHHHHcCCCCEEEEEEee
Confidence 8532 1 1236899999999999999987544
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-09 Score=100.56 Aligned_cols=130 Identities=11% Similarity=0.108 Sum_probs=83.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCC-hhHHHHH---HHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGD-SIALDLL---AQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~-~~~l~~~---~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
++.+|||||||+|.++..++.. ...+|+++|+| +.+++.+ ++++..++. .++.+...+..+.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~----~~v~~~~~d~~~l--------- 90 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL----SNVVFVIAAAESL--------- 90 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC----SSEEEECCBTTBC---------
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC----CCeEEEEcCHHHh---------
Confidence 6679999999999777777653 45689999999 6666665 777766554 3466655554322
Q ss_pred cCCCccEEEEeceeeCC--------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------c---CChh
Q 008457 451 NNEGFEVILGTDVSYIP--------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----------Q---VDEP 508 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~--------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-----------~---~~~~ 508 (564)
+...+|+|.+.-+.+.. ...+.+++.+.++| +|+| .++++.... . ....
T Consensus 91 ~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~L-kpGG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 161 (225)
T 3p2e_A 91 PFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLA-KKEA--------HFEFVTTYSDSYEEAEIKKRGLPLLSKA 161 (225)
T ss_dssp CGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTE-EEEE--------EEEEEECCCC--------------CCHH
T ss_pred hhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhc-CCCc--------EEEEEEeccccchhchhhhcCCCCCChh
Confidence 11123544433333321 12456899999999 9988 777622211 0 1111
Q ss_pred -----HHHHHHHHcCCeEEEEcCC
Q 008457 509 -----SMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 509 -----~~~~~~~~~g~~~~~~~~~ 527 (564)
.+.+.++++||++.++...
T Consensus 162 ~~~~~el~~~l~~aGf~v~~~~~~ 185 (225)
T 3p2e_A 162 YFLSEQYKAELSNSGFRIDDVKEL 185 (225)
T ss_dssp HHHSHHHHHHHHHHTCEEEEEEEE
T ss_pred hcchHHHHHHHHHcCCCeeeeeec
Confidence 2667788899999988644
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.91 E-value=5.7e-09 Score=100.99 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=90.8
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhc--CCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTAN--LKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n--~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.+++|||||||+|.++..++.. +..+|+++|+++.+++.+++|+... +. ...++++..-|. .+.+ +...
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~--~~~rv~v~~~D~-----~~~l-~~~~ 146 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL--DDPRVDVQVDDG-----FMHI-AKSE 146 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT--TSTTEEEEESCS-----HHHH-HTCC
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc--CCCceEEEECcH-----HHHH-hhCC
Confidence 5689999999999888888776 4579999999999999999997542 22 124666664432 1111 1135
Q ss_pred CCccEEEEeceeeCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEEEE
Q 008457 453 EGFEVILGTDVSYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDK 524 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~-----~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~ 524 (564)
++||+|++ |..+... ....+++.+.++| +|+| ++++......... ....+.+++. |.....
T Consensus 147 ~~fD~Ii~-d~~~~~~~~~~l~~~~~~~~~~~~L-~pgG--------~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~ 215 (275)
T 1iy9_A 147 NQYDVIMV-DSTEPVGPAVNLFTKGFYAGIAKAL-KEDG--------IFVAQTDNPWFTPELITNVQRDVKEI-FPITKL 215 (275)
T ss_dssp SCEEEEEE-SCSSCCSCCCCCSTTHHHHHHHHHE-EEEE--------EEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEE
T ss_pred CCeeEEEE-CCCCCCCcchhhhHHHHHHHHHHhc-CCCc--------EEEEEcCCccccHHHHHHHHHHHHHh-CCCeEE
Confidence 68999996 6544221 1367999999999 9988 7766543322222 3455666555 665556
Q ss_pred cCCCCCC
Q 008457 525 WPSKNSA 531 (564)
Q Consensus 525 ~~~~~~~ 531 (564)
+....|.
T Consensus 216 ~~~~vp~ 222 (275)
T 1iy9_A 216 YTANIPT 222 (275)
T ss_dssp EEECCTT
T ss_pred EEEecCc
Confidence 5444444
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.1e-09 Score=106.04 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=94.2
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++.+|||+|||+|.++..++.... .+++++|+ +.++. ++++...+. .+++.+...|..+ +++
T Consensus 181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~---~~~v~~~~~d~~~--------~~p 246 (348)
T 3lst_A 181 DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDV---AGRWKVVEGDFLR--------EVP 246 (348)
T ss_dssp CCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGG---TTSEEEEECCTTT--------CCC
T ss_pred CccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCC---CCCeEEEecCCCC--------CCC
Confidence 344678999999999988877777654 48999999 55555 333222222 2568888777642 123
Q ss_pred CCCccEEEEeceeeCCCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------------------cCC
Q 008457 452 NEGFEVILGTDVSYIPEAI--LPLFATAKELTASSNKSLREDQQPAFILCHIFR-----------------------QVD 506 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~--~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-----------------------~~~ 506 (564)
+||+|++..++++..+. ..+++.+.++| +|+| .+++..... ..+
T Consensus 247 --~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L-kpgG--------~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t 315 (348)
T 3lst_A 247 --HADVHVLKRILHNWGDEDSVRILTNCRRVM-PAHG--------RVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERT 315 (348)
T ss_dssp --CCSEEEEESCGGGSCHHHHHHHHHHHHHTC-CTTC--------EEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCB
T ss_pred --CCcEEEEehhccCCCHHHHHHHHHHHHHhc-CCCC--------EEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCC
Confidence 89999999999887766 69999999999 9988 777754321 113
Q ss_pred hhHHHHHHHHcCCeEEEEcC
Q 008457 507 EPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 507 ~~~~~~~~~~~g~~~~~~~~ 526 (564)
..++.+.++++||++++++.
T Consensus 316 ~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 316 AAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp HHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEE
Confidence 34677888999999999985
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.91 E-value=5e-09 Score=104.87 Aligned_cols=133 Identities=11% Similarity=0.083 Sum_probs=85.0
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc-CC-CEEEEEcCChhHHHHHHHHHHh-------cCCCCCCCceEEEEeecCCCcc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTA-------NLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~-~~-~~v~~tD~~~~~l~~~~~n~~~-------n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
.+.++.+|||+|||+|.++..++.. ++ .+|+++|+++.+++.+++|+.. |+......++.+...|..+..
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~- 180 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT- 180 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc-
Confidence 3457889999999999888887775 44 7999999999999999999984 433211246777666654321
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHH--cCCeE
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ--CGFRL 521 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~g~~~ 521 (564)
.++..++||+|++. + .....+++.+.++| +|+| .+++...... ....+++.+.+ .+|..
T Consensus 181 ----~~~~~~~fD~V~~~-~----~~~~~~l~~~~~~L-kpgG--------~lv~~~~~~~-~~~~~~~~l~~~~~~~~~ 241 (336)
T 2b25_A 181 ----EDIKSLTFDAVALD-M----LNPHVTLPVFYPHL-KHGG--------VCAVYVVNIT-QVIELLDGIRTCELALSC 241 (336)
T ss_dssp -----------EEEEEEC-S----SSTTTTHHHHGGGE-EEEE--------EEEEEESSHH-HHHHHHHHHHHHTCCEEE
T ss_pred ----cccCCCCeeEEEEC-C----CCHHHHHHHHHHhc-CCCc--------EEEEEeCCHH-HHHHHHHHHHhcCCCccc
Confidence 12344589999863 2 23344789999999 9988 6665544322 12244555543 34444
Q ss_pred EEEc
Q 008457 522 VDKW 525 (564)
Q Consensus 522 ~~~~ 525 (564)
..+.
T Consensus 242 ~~~~ 245 (336)
T 2b25_A 242 EKIS 245 (336)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 4444
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.7e-09 Score=97.29 Aligned_cols=129 Identities=11% Similarity=0.044 Sum_probs=83.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcC--CCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANL--KPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~--~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
++.+|||||||+|.++..++... ...|+++|+++.+++.+++|+.... ......++.+...|..+. +.. .+..
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~--l~~--~~~~ 121 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH--LPN--FFYK 121 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC--HHH--HCCT
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh--hhh--hCCC
Confidence 55689999999998888877765 4689999999999999998876410 000114577766655421 110 1456
Q ss_pred CCccEEEEe--ceeeCC------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcC
Q 008457 453 EGFEVILGT--DVSYIP------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG 518 (564)
Q Consensus 453 ~~fD~Ii~~--d~~y~~------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g 518 (564)
++||.|+.. |..+.. ...+.+++.+.++| +|+| .+++........ ..+.+.+.+.|
T Consensus 122 ~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~L-kpGG--------~l~~~td~~~~~-~~~~~~l~~~~ 185 (235)
T 3ckk_A 122 GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVL-RVGG--------LVYTITDVLELH-DWMCTHFEEHP 185 (235)
T ss_dssp TCEEEEEEESCC-----------CCCHHHHHHHHHHE-EEEE--------EEEEEESCHHHH-HHHHHHHHTST
T ss_pred cCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHC-CCCC--------EEEEEeCCHHHH-HHHHHHHHHCC
Confidence 789998753 111100 01257999999999 9988 887775543222 23455566666
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.9e-09 Score=111.30 Aligned_cols=111 Identities=11% Similarity=0.068 Sum_probs=82.2
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCC--CCCCCceEEEEeecCCCccchhhhhh
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLK--PPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~--~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
.++.+|||||||+|.++..++..++ .+|+++|+++.+++.+++++..... .....++.+...|..+. +.
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL-------p~ 792 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF-------DS 792 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC-------CT
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC-------Cc
Confidence 3778999999999987777776653 6999999999999999987764311 11124577766665432 23
Q ss_pred cCCCccEEEEeceeeCCCChH--HHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 451 NNEGFEVILGTDVSYIPEAIL--PLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~--~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
..++||+|++.+++.+..... .+++.+.++| +|+ .++++.+.
T Consensus 793 ~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvL-KPG---------~LIISTPN 836 (950)
T 3htx_A 793 RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLF-HPK---------LLIVSTPN 836 (950)
T ss_dssp TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTT-CCS---------EEEEEECB
T ss_pred ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHc-CCC---------EEEEEecC
Confidence 457899999999999876544 5899999999 873 56666543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-09 Score=100.39 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=79.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc-CC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-NE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~-~~ 453 (564)
++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..++.. .++.+...|..+. +.... ++
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-----~~~~~~~~ 125 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE---SRIELLFGDALQL-----GEKLELYP 125 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT---TTEEEECSCGGGS-----HHHHTTSC
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECCHHHH-----HHhcccCC
Confidence 67799999999998877777654 579999999999999999999988763 4566665544321 11111 46
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILC 499 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~ 499 (564)
+||+|++... ......+++.+.++| +|+| .+++.
T Consensus 126 ~fD~I~~~~~---~~~~~~~l~~~~~~L-~pgG--------~lv~~ 159 (233)
T 2gpy_A 126 LFDVLFIDAA---KGQYRRFFDMYSPMV-RPGG--------LILSD 159 (233)
T ss_dssp CEEEEEEEGG---GSCHHHHHHHHGGGE-EEEE--------EEEEE
T ss_pred CccEEEECCC---HHHHHHHHHHHHHHc-CCCe--------EEEEE
Confidence 8999997544 247889999999999 9988 77665
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-09 Score=106.32 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=78.1
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHH-------hcCCCCCCCceEEEEeecCCCccc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVT-------ANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~-------~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+.++.+|||||||+|.++..++.. ++.+|+++|+++.+++.+++|++ .+++. ..++.+..-|..+.+ +
T Consensus 170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~--~~rVefi~GD~~~lp-~ 246 (438)
T 3uwp_A 170 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK--HAEYTLERGDFLSEE-W 246 (438)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC--CCEEEEEECCTTSHH-H
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC--CCCeEEEECcccCCc-c
Confidence 4558889999999999888777755 44579999999999999998763 33431 146777666654321 1
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILC 499 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~ 499 (564)
. . .-..||+|+++.++| .......+..+.+.| +|+| +++++
T Consensus 247 ~---d-~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvL-KPGG--------rIVss 287 (438)
T 3uwp_A 247 R---E-RIANTSVIFVNNFAF-GPEVDHQLKERFANM-KEGG--------RIVSS 287 (438)
T ss_dssp H---H-HHHTCSEEEECCTTC-CHHHHHHHHHHHTTS-CTTC--------EEEES
T ss_pred c---c-ccCCccEEEEccccc-CchHHHHHHHHHHcC-CCCc--------EEEEe
Confidence 0 0 013799999876654 456667777888999 9988 77655
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.89 E-value=4.1e-09 Score=107.51 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=79.7
Q ss_pred CCCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHH-------HHHHHhcCCCCCCCceEEEEe-ecCCCc
Q 008457 372 PTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLL-------AQNVTANLKPPFLAKLITKRL-EWGNRD 442 (564)
Q Consensus 372 ~~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~-------~~n~~~n~~~~~~~~i~~~~l-~w~~~~ 442 (564)
..+.++.+|||||||+|.++..++.. ++.+|+++|+++.+++.+ ++|+..+++.. .++.+..- ++...
T Consensus 238 l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~--~nV~~i~gD~~~~~- 314 (433)
T 1u2z_A 238 CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRL--NNVEFSLKKSFVDN- 314 (433)
T ss_dssp TTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCC--CCEEEEESSCSTTC-
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCC--CceEEEEcCccccc-
Confidence 34558889999999999888877775 456899999999999988 88888776321 35655432 22111
Q ss_pred cchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILC 499 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~ 499 (564)
..+. ...++||+|+++.+++ .......++.+.+.| +|+| .+++.
T Consensus 315 --~~~~-~~~~~FDvIvvn~~l~-~~d~~~~L~el~r~L-KpGG--------~lVi~ 358 (433)
T 1u2z_A 315 --NRVA-ELIPQCDVILVNNFLF-DEDLNKKVEKILQTA-KVGC--------KIISL 358 (433)
T ss_dssp --HHHH-HHGGGCSEEEECCTTC-CHHHHHHHHHHHTTC-CTTC--------EEEES
T ss_pred --cccc-cccCCCCEEEEeCccc-cccHHHHHHHHHHhC-CCCe--------EEEEe
Confidence 0010 0135899999877774 356777889999999 9988 66665
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=98.75 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=87.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||+|||+|+.+..++.. +..+|+++|+++.+++.+++|+..++. .++.+...|..+. ........
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~----~~v~~~~~D~~~~---~~~~~~~~ 154 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV----LNTIIINADMRKY---KDYLLKNE 154 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC----CSEEEEESCHHHH---HHHHHHTT
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC----CcEEEEeCChHhc---chhhhhcc
Confidence 47789999999999988887774 347999999999999999999998876 3466654443211 00000025
Q ss_pred CCccEEEEeceeeCC-------------------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--cCChhHHH
Q 008457 453 EGFEVILGTDVSYIP-------------------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--QVDEPSML 511 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~-------------------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--~~~~~~~~ 511 (564)
++||+|++ |..+.. .....+++.+.++| +|+| .++++...- .+.+ ..+
T Consensus 155 ~~fD~Vl~-d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~lv~stcs~~~~ene-~~v 223 (274)
T 3ajd_A 155 IFFDKILL-DAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLL-KKDG--------ELVYSTCSMEVEENE-EVI 223 (274)
T ss_dssp CCEEEEEE-EECCC------------HHHHTGGGTCHHHHHHHHHHHE-EEEE--------EEEEEESCCCTTSSH-HHH
T ss_pred ccCCEEEE-cCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhC-CCCC--------EEEEEECCCChHHhH-HHH
Confidence 68999985 433321 45578999999999 9988 666654432 2233 333
Q ss_pred HH-HHH-cCCeEEEE
Q 008457 512 SA-ATQ-CGFRLVDK 524 (564)
Q Consensus 512 ~~-~~~-~g~~~~~~ 524 (564)
+. +++ .+|++..+
T Consensus 224 ~~~l~~~~~~~~~~~ 238 (274)
T 3ajd_A 224 KYILQKRNDVELIII 238 (274)
T ss_dssp HHHHHHCSSEEEECC
T ss_pred HHHHHhCCCcEEecC
Confidence 33 333 36666554
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-09 Score=104.28 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=65.0
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 141 (564)
+...+.+.+...++.+|||||||+|.++..|++. +.+|+|+|+++.+++.|+++....+ .+++++++|+...
T Consensus 30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~----- 102 (299)
T 2h1r_A 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT----- 102 (299)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSS-----
T ss_pred HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhC-----
Confidence 3445555566678899999999999999999987 6799999999999999998764322 5789999998643
Q ss_pred CCCCceeEEEEccccc
Q 008457 142 ISPSSIDIVTMVFVLS 157 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~ 157 (564)
+..+||+|+++...+
T Consensus 103 -~~~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 103 -VFPKFDVCTANIPYK 117 (299)
T ss_dssp -CCCCCSEEEEECCGG
T ss_pred -CcccCCEEEEcCCcc
Confidence 234899999976544
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.9e-09 Score=99.11 Aligned_cols=107 Identities=12% Similarity=0.072 Sum_probs=79.5
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||||||+|..+..++... ..+|+++|+++.+++.+++|+..++.. +++.+...|..+ .+..+..
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~-----~~~~~~~ 134 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS---DKIGLRLSPAKD-----TLAELIH 134 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCHHH-----HHHHHHT
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC---CceEEEeCCHHH-----HHHHhhh
Confidence 367799999999997777777653 579999999999999999999988764 457776554421 1112221
Q ss_pred ----CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 453 ----EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 453 ----~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
++||+|+. |. .......+++.+.++| +|+| .+++...
T Consensus 135 ~~~~~~fD~v~~-~~--~~~~~~~~l~~~~~~L-~pgG--------~lv~~~~ 175 (225)
T 3tr6_A 135 AGQAWQYDLIYI-DA--DKANTDLYYEESLKLL-REGG--------LIAVDNV 175 (225)
T ss_dssp TTCTTCEEEEEE-CS--CGGGHHHHHHHHHHHE-EEEE--------EEEEECS
T ss_pred ccCCCCccEEEE-CC--CHHHHHHHHHHHHHhc-CCCc--------EEEEeCC
Confidence 68999983 22 3456888999999999 9988 7766443
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6e-09 Score=99.26 Aligned_cols=99 Identities=14% Similarity=0.073 Sum_probs=74.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh---
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--- 450 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~--- 450 (564)
++++|||||||+|..+..++... ..+|+++|+++.+++.+++|+..++.. .++.+..-|.. +.+..+
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~---~~i~~~~gda~-----~~l~~l~~~ 150 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD---HKIDFREGPAL-----PVLDEMIKD 150 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG---GGEEEEESCHH-----HHHHHHHHS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCeEEEECCHH-----HHHHHHHhc
Confidence 56799999999997777766643 469999999999999999999987763 45666544332 111122
Q ss_pred --cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 --NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 --~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..++||+|++. . .......+++.+.++| +|+|
T Consensus 151 ~~~~~~fD~V~~d-~--~~~~~~~~l~~~~~~L-kpGG 184 (247)
T 1sui_A 151 EKNHGSYDFIFVD-A--DKDNYLNYHKRLIDLV-KVGG 184 (247)
T ss_dssp GGGTTCBSEEEEC-S--CSTTHHHHHHHHHHHB-CTTC
T ss_pred cCCCCCEEEEEEc-C--chHHHHHHHHHHHHhC-CCCe
Confidence 15789999853 2 2567889999999999 9988
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.89 E-value=8.9e-09 Score=94.76 Aligned_cols=117 Identities=13% Similarity=0.028 Sum_probs=76.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+. ++.+...|..+ + +++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~---------~~~~~~~d~~~---------~-~~~ 110 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSE---------I-SGK 110 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGG---------C-CCC
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC---------CCEEEECcHHH---------C-CCC
Confidence 4778999999999988887777766689999999999999999865 23444443321 1 258
Q ss_pred ccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 455 FEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
||+|+++.++++... ...+++.+.+++ | .++++.... +...+.+.+.+.| ++..+.
T Consensus 111 ~D~v~~~~p~~~~~~~~~~~~l~~~~~~~----g--------~~~~~~~~~--~~~~~~~~~~~~g-~~~~~~ 168 (200)
T 1ne2_A 111 YDTWIMNPPFGSVVKHSDRAFIDKAFETS----M--------WIYSIGNAK--ARDFLRREFSARG-DVFREE 168 (200)
T ss_dssp EEEEEECCCC-------CHHHHHHHHHHE----E--------EEEEEEEGG--GHHHHHHHHHHHE-EEEEEE
T ss_pred eeEEEECCCchhccCchhHHHHHHHHHhc----C--------cEEEEEcCc--hHHHHHHHHHHCC-CEEEEE
Confidence 999997766555432 234555555555 3 455554332 2334566777788 777664
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.1e-09 Score=104.25 Aligned_cols=138 Identities=15% Similarity=0.090 Sum_probs=90.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHh--cCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTA--NLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~--n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.+.+|||||||+|.++..++.. ...+|+++|+|+.+++.+++|+.. ++.. ..++++..-|+.+ .+ +...
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~--~~~v~~~~~D~~~-----~l-~~~~ 187 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE--DKRVNVFIEDASK-----FL-ENVT 187 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG--STTEEEEESCHHH-----HH-HHCC
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC--CCcEEEEEccHHH-----HH-hhcC
Confidence 5679999999999888887766 357999999999999999999765 2221 2456666554321 11 1235
Q ss_pred CCccEEEEeceee--C-CCC-h-HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEEEE
Q 008457 453 EGFEVILGTDVSY--I-PEA-I-LPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDK 524 (564)
Q Consensus 453 ~~fD~Ii~~d~~y--~-~~~-~-~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~ 524 (564)
++||+|++ |... . ... . ..+++.+.++| +|+| .+++......... ..+.+.+++. |...+.
T Consensus 188 ~~fDvIi~-d~~~p~~~~~~l~~~~~l~~~~~~L-kpgG--------~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~ 256 (321)
T 2pt6_A 188 NTYDVIIV-DSSDPIGPAETLFNQNFYEKIYNAL-KPNG--------YCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEY 256 (321)
T ss_dssp SCEEEEEE-ECCCSSSGGGGGSSHHHHHHHHHHE-EEEE--------EEEEEECCTTTCHHHHHHHHHHHHTT-CSEEEE
T ss_pred CCceEEEE-CCcCCCCcchhhhHHHHHHHHHHhc-CCCc--------EEEEEcCCcccCHHHHHHHHHHHHHH-CCCeEE
Confidence 68999996 3321 1 111 1 78999999999 9988 7777544332222 3455666554 555555
Q ss_pred cCCCCCCC
Q 008457 525 WPSKNSAS 532 (564)
Q Consensus 525 ~~~~~~~~ 532 (564)
+....|..
T Consensus 257 ~~~~vp~~ 264 (321)
T 2pt6_A 257 ANISIPTY 264 (321)
T ss_dssp EEEECTTS
T ss_pred EEEEeccc
Confidence 54444443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.3e-09 Score=99.62 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=77.9
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
...++.+|||+|||+|.++..++...+.+|+++|+++.+++.+++|+..++. .++.+...|... ... ..
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~v~~~~~d~~~--~~~-----~~ 156 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV----KNVHVILGDGSK--GFP-----PK 156 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC----CSEEEEESCGGG--CCG-----GG
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEECCccc--CCC-----CC
Confidence 4457889999999999888777766547899999999999999999988775 246666555411 110 12
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ 504 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~ 504 (564)
.+||+|++..++.+. .+.+.++| +|+| .++++.....
T Consensus 157 ~~fD~Ii~~~~~~~~------~~~~~~~L-~pgG--------~lvi~~~~~~ 193 (235)
T 1jg1_A 157 APYDVIIVTAGAPKI------PEPLIEQL-KIGG--------KLIIPVGSYH 193 (235)
T ss_dssp CCEEEEEECSBBSSC------CHHHHHTE-EEEE--------EEEEEECSSS
T ss_pred CCccEEEECCcHHHH------HHHHHHhc-CCCc--------EEEEEEecCC
Confidence 359999988766543 24788899 9988 8887766543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.8e-09 Score=114.51 Aligned_cols=107 Identities=11% Similarity=0.122 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|+++....+ .+++++++|+.... +...++||+|
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l---~~~~~~fD~I 613 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWL---REANEQFDLI 613 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHH---HHCCCCEEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH---HhcCCCccEE
Confidence 468899999999999999988863 3479999999999999999875443 36999999986421 1235789999
Q ss_pred EEccc-----------ccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 151 TMVFV-----------LSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 151 ~~~~v-----------l~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
++.-- +.+ ..+...++..+.++|+|||.|+++..
T Consensus 614 i~DPP~f~~~~~~~~~~~~--~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 614 FIDPPTFSNSKRMEDAFDV--QRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp EECCCSBC-------CCBH--HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCccccCCccchhHHHH--HHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99542 122 25677899999999999999998653
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.5e-09 Score=103.02 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=89.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++++|||||||+|.++..++... ..+|+++|+++.+++.+++++..++......++++...|.. +.+ ....++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~-----~~l-~~~~~~ 151 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDAS-----KFL-ENVTNT 151 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHH-----HHH-HHCCSC
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChH-----HHH-HhCCCC
Confidence 56899999999998888777654 56999999999999999998765321111245666544322 111 122568
Q ss_pred ccEEEEeceeeC---CCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEEEEcC
Q 008457 455 FEVILGTDVSYI---PEAI--LPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 455 fD~Ii~~d~~y~---~~~~--~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~~~ 526 (564)
||+|++ |.... ...+ ..+++.+.++| +|+| ++++......... ..+.+.+++. |...+.+.
T Consensus 152 fD~Ii~-d~~~~~~~~~~l~~~~~l~~~~~~L-~pgG--------~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~ 220 (283)
T 2i7c_A 152 YDVIIV-DSSDPIGPAETLFNQNFYEKIYNAL-KPNG--------YCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEYAN 220 (283)
T ss_dssp EEEEEE-ECCCTTTGGGGGSSHHHHHHHHHHE-EEEE--------EEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred ceEEEE-cCCCCCCcchhhhHHHHHHHHHHhc-CCCc--------EEEEECCCcccCHHHHHHHHHHHHHH-CCceEEEE
Confidence 999996 33221 1122 78999999999 9988 7776644332222 2445555544 66555554
Q ss_pred CCCCCC
Q 008457 527 SKNSAS 532 (564)
Q Consensus 527 ~~~~~~ 532 (564)
...|..
T Consensus 221 ~~vP~y 226 (283)
T 2i7c_A 221 ISIPTY 226 (283)
T ss_dssp EECTTS
T ss_pred EEcCCc
Confidence 444443
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-08 Score=99.15 Aligned_cols=164 Identities=15% Similarity=0.141 Sum_probs=102.0
Q ss_pred CCeEEEEcCCccccHHHHHHh-----------------CCCcEEEEEeCC-----------hHHHHHHHhcccccCCCee
Q 008457 76 RKDVLEVGCGAGNTIFPLIAA-----------------YPDVFVYACDFS-----------PRAVNLVMTHKDFTETRVS 127 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~-----------------~~~~~v~~iD~s-----------~~~l~~a~~~~~~~~~~i~ 127 (564)
..+|+|+||++|.++..+... .|..+|+..|+. +.+.+.+++.... ..+.-
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~-~~~~~ 131 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR-KIGSC 131 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC-CTTSE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC-CCCce
Confidence 689999999999999887765 356889999987 4444443332211 11234
Q ss_pred EEEecCCcccccCCCCCCceeEEEEcccccCCChh-------------------------------------HHHHHHHH
Q 008457 128 TFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPE-------------------------------------KMSLVLQN 170 (564)
Q Consensus 128 ~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~-------------------------------------~~~~~l~~ 170 (564)
|+.+.- ..-....||++++|+|+++.+|||++.. |...+|+.
T Consensus 132 f~~gvp-gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~ 210 (384)
T 2efj_A 132 LIGAMP-GSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI 210 (384)
T ss_dssp EEEECC-SCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecc-hhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555532 2223336789999999999999998521 12234777
Q ss_pred HHhccCCCeEEEEEecCCCch--h------hhhhcccc--cccccceeecCCCceeeccCHHHHHHHHHhC-CCcEEEee
Q 008457 171 IKKVLKPTGYVLFRDYAIGDL--A------QERLTGKD--QKISENFYVRGDGTRAFYFSNDFLTSLFKEN-GFDVEELG 239 (564)
Q Consensus 171 ~~r~LkpgG~lii~~~~~~~~--~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a-Gf~~~~~~ 239 (564)
.++.|+|||++++...+.++. . ........ ..+...-....-....|+.+.++++.++++. +|.+..+.
T Consensus 211 Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 211 HSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 799999999999998776553 1 11111000 0000000000011234567999999999987 48887765
Q ss_pred ee
Q 008457 240 LC 241 (564)
Q Consensus 240 ~~ 241 (564)
..
T Consensus 291 ~~ 292 (384)
T 2efj_A 291 TF 292 (384)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=105.08 Aligned_cols=140 Identities=24% Similarity=0.243 Sum_probs=92.1
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
++..++..+. ..++.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|+..++. . +.+...|
T Consensus 89 ss~l~a~~L~----~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~----~-v~~~~~D 159 (464)
T 3m6w_A 89 SAQAVGVLLD----PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA----P-LAVTQAP 159 (464)
T ss_dssp TTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC----C-CEEECSC
T ss_pred HHHHHHHhcC----cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----e-EEEEECC
Confidence 3455555553 2378899999999999998888753 36999999999999999999999886 2 4444322
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeC--------CC--------C-------hHHHHHHHHHHhhccCCCCCCCCCc
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYI--------PE--------A-------ILPLFATAKELTASSNKSLREDQQP 494 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--------~~--------~-------~~~l~~~~~~ll~~~~g~~~~~~~~ 494 (564)
. ..+.....++||+|++ |..+. ++ . ...+++.+.++| +|+|
T Consensus 160 a------~~l~~~~~~~FD~Il~-D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~L-kpGG-------- 223 (464)
T 3m6w_A 160 P------RALAEAFGTYFHRVLL-DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLL-GPGG-------- 223 (464)
T ss_dssp H------HHHHHHHCSCEEEEEE-ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTE-EEEE--------
T ss_pred H------HHhhhhccccCCEEEE-CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhc-CCCc--------
Confidence 2 2222223578999984 33321 11 1 167888899999 9987
Q ss_pred EEEEEEe--eccCChhHHHHHHHHc-CCeEEEE
Q 008457 495 AFILCHI--FRQVDEPSMLSAATQC-GFRLVDK 524 (564)
Q Consensus 495 ~~~~~~~--~r~~~~~~~~~~~~~~-g~~~~~~ 524 (564)
.++.+.- ...+.+..+...+++. +|+++.+
T Consensus 224 ~LvysTCs~~~eEne~vv~~~l~~~~~~~l~~~ 256 (464)
T 3m6w_A 224 VLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDA 256 (464)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHHHCTTEEEECC
T ss_pred EEEEEeccCchhcCHHHHHHHHHHCCCcEEEec
Confidence 6655433 3333443344444555 6877765
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=104.67 Aligned_cols=142 Identities=17% Similarity=0.155 Sum_probs=94.7
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
.++.+++..+. ..++.+|||+|||+|+.+..++.. ...+|+++|+++.+++.+++|+..++.. ++.+...
T Consensus 92 ~ss~l~~~~L~----~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~----nv~v~~~ 163 (456)
T 3m4x_A 92 PSAMIVGTAAA----AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS----NAIVTNH 163 (456)
T ss_dssp TTTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS----SEEEECC
T ss_pred HHHHHHHHHcC----CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEeC
Confidence 34555666653 236889999999999998888765 3469999999999999999999998873 4555433
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCC----------------C-------ChHHHHHHHHHHhhccCCCCCCCCC
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIP----------------E-------AILPLFATAKELTASSNKSLREDQQ 493 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~----------------~-------~~~~l~~~~~~ll~~~~g~~~~~~~ 493 (564)
|. ..+....+++||+|++ |..+.. . ....+++.+.++| +|+|
T Consensus 164 Da------~~l~~~~~~~FD~Il~-DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L-kpGG------- 228 (456)
T 3m4x_A 164 AP------AELVPHFSGFFDRIVV-DAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKML-KNKG------- 228 (456)
T ss_dssp CH------HHHHHHHTTCEEEEEE-ECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTE-EEEE-------
T ss_pred CH------HHhhhhccccCCEEEE-CCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhc-CCCc-------
Confidence 22 2222223578999985 333211 1 1126788889999 9987
Q ss_pred cEEEEEEe--eccCChhHHHHHHHHcCCeEEEE
Q 008457 494 PAFILCHI--FRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 494 ~~~~~~~~--~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
.++.+.- ...+.+..+...+++.+|++..+
T Consensus 229 -~LvYsTCs~~~eEne~vv~~~l~~~~~~l~~~ 260 (456)
T 3m4x_A 229 -QLIYSTCTFAPEENEEIISWLVENYPVTIEEI 260 (456)
T ss_dssp -EEEEEESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred -EEEEEEeecccccCHHHHHHHHHhCCCEEEec
Confidence 6555433 33334444555566778777655
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.7e-09 Score=97.68 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=78.8
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCC------CEEEEEcCChhHHHHHHHHHHhcCCCC-CCCceEEEEeecCCCccchh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSA------DLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~------~~v~~tD~~~~~l~~~~~n~~~n~~~~-~~~~i~~~~l~w~~~~~~~~ 446 (564)
+.++.+|||+|||+|.++..++.... .+|+++|+++.+++.+++|+..++... ...++.+...|..+. ...
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~ 155 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQV--NEE 155 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGC--CHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhc--ccc
Confidence 44788999999999988877776543 599999999999999999998876200 014567666655432 100
Q ss_pred hhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 447 IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
. ....++||+|++...+.+ +++.+.++| +|+| .++++...
T Consensus 156 ~-~~~~~~fD~I~~~~~~~~------~~~~~~~~L-kpgG--------~lv~~~~~ 195 (227)
T 2pbf_A 156 E-KKELGLFDAIHVGASASE------LPEILVDLL-AENG--------KLIIPIEE 195 (227)
T ss_dssp H-HHHHCCEEEEEECSBBSS------CCHHHHHHE-EEEE--------EEEEEEEE
T ss_pred c-CccCCCcCEEEECCchHH------HHHHHHHhc-CCCc--------EEEEEEcc
Confidence 0 012358999998766543 358889999 9988 77777665
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=8.7e-09 Score=96.99 Aligned_cols=106 Identities=17% Similarity=0.088 Sum_probs=78.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++|+..++.. .++.+...|.. +.+..+..
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~i~~~~~d~~-----~~~~~~~~ 139 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE---HKIDLRLKPAL-----ETLDELLA 139 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT---TTEEEEESCHH-----HHHHHHHH
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC---CeEEEEEcCHH-----HHHHHHHh
Confidence 367899999999997777776643 569999999999999999999988763 45666654432 11112221
Q ss_pred ----CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 453 ----EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 453 ----~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
++||+|++... ......+++.+.++| +|+| .+++..
T Consensus 140 ~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L-~pgG--------~lv~~~ 179 (229)
T 2avd_A 140 AGEAGTFDVAVVDAD---KENCSAYYERCLQLL-RPGG--------ILAVLR 179 (229)
T ss_dssp TTCTTCEEEEEECSC---STTHHHHHHHHHHHE-EEEE--------EEEEEC
T ss_pred cCCCCCccEEEECCC---HHHHHHHHHHHHHHc-CCCe--------EEEEEC
Confidence 68999986322 556788999999999 9988 776643
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-09 Score=102.42 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=75.5
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh--
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-- 450 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~-- 450 (564)
.++++|||||||+|..+..++... ..+|+++|+++++++.+++|+..++.. +++.+...|.. +.+..+
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~---~~i~~~~gda~-----~~l~~~~~ 130 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE---HKIKLRLGPAL-----DTLHSLLN 130 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT---TTEEEEESCHH-----HHHHHHHH
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHH-----HHHHHHhh
Confidence 366799999999997777776643 469999999999999999999998874 46777654432 111111
Q ss_pred --cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 --NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 --~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..++||+|+..- .......+++.+.++| +|+|
T Consensus 131 ~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~L-kpGG 164 (242)
T 3r3h_A 131 EGGEHQFDFIFIDA---DKTNYLNYYELALKLV-TPKG 164 (242)
T ss_dssp HHCSSCEEEEEEES---CGGGHHHHHHHHHHHE-EEEE
T ss_pred ccCCCCEeEEEEcC---ChHHhHHHHHHHHHhc-CCCe
Confidence 146899998542 2566788999999999 9988
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-09 Score=100.72 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=79.3
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh----
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK---- 448 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~---- 448 (564)
.++.+|||||||+|..+..++... ..+|+++|+++.+++.+++|+..++.. +++.+...|..+. ...+.
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~--~~~~~~~~~ 133 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE---NKIFLKLGSALET--LQVLIDSKS 133 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHHHH--HHHHHHCSS
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCEEEEECCHHHH--HHHHHhhcc
Confidence 367899999999998887777664 569999999999999999999887763 3466655443210 11110
Q ss_pred ------hhc-C-CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 449 ------EEN-N-EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 449 ------~~~-~-~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
.++ . ++||+|++. ........+++.+.++| +|+| .+++..
T Consensus 134 ~~~~~~~f~~~~~~fD~I~~~---~~~~~~~~~l~~~~~~L-~pgG--------~lv~~~ 181 (239)
T 2hnk_A 134 APSWASDFAFGPSSIDLFFLD---ADKENYPNYYPLILKLL-KPGG--------LLIADN 181 (239)
T ss_dssp CCGGGTTTCCSTTCEEEEEEC---SCGGGHHHHHHHHHHHE-EEEE--------EEEEEC
T ss_pred cccccccccCCCCCcCEEEEe---CCHHHHHHHHHHHHHHc-CCCe--------EEEEEc
Confidence 011 1 689999865 33556778999999999 9988 777654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=8.9e-09 Score=96.75 Aligned_cols=108 Identities=14% Similarity=0.035 Sum_probs=77.6
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC-C-CEEEEEcCChhHHHHHHHHHHhcCCCC-CCCceEEEEeecCCCccchhhhhh
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS-A-DLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~-~-~~v~~tD~~~~~l~~~~~n~~~n~~~~-~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
..++.+|||+|||+|.++..++... . .+|+++|+++.+++.+++|+..++... ...++.+...|.... ..
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-------~~ 147 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG-------YA 147 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC-------CG
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC-------cc
Confidence 4478899999999998887777653 3 599999999999999999998765300 013566666655321 11
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
..++||+|++..++. .+++.+.++| +|+| .++++....
T Consensus 148 ~~~~fD~i~~~~~~~------~~~~~~~~~L-kpgG--------~lv~~~~~~ 185 (226)
T 1i1n_A 148 EEAPYDAIHVGAAAP------VVPQALIDQL-KPGG--------RLILPVGPA 185 (226)
T ss_dssp GGCCEEEEEECSBBS------SCCHHHHHTE-EEEE--------EEEEEESCT
T ss_pred cCCCcCEEEECCchH------HHHHHHHHhc-CCCc--------EEEEEEecC
Confidence 245899998776553 2357888999 9988 777776543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-09 Score=96.98 Aligned_cols=97 Identities=11% Similarity=0.000 Sum_probs=73.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++|+..++.. +++.+...|..+ .+ +..++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~-----~~-~~~~~ 126 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI---DRVELQVGDPLG-----IA-AGQRD 126 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG---GGEEEEESCHHH-----HH-TTCCS
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC---ceEEEEEecHHH-----Hh-ccCCC
Confidence 56799999999997777776653 469999999999999999999887753 456666544321 11 11235
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
||+|++. ........+++.+.++| +|+|
T Consensus 127 -fD~v~~~---~~~~~~~~~l~~~~~~L-kpgG 154 (210)
T 3c3p_A 127 -IDILFMD---CDVFNGADVLERMNRCL-AKNA 154 (210)
T ss_dssp -EEEEEEE---TTTSCHHHHHHHHGGGE-EEEE
T ss_pred -CCEEEEc---CChhhhHHHHHHHHHhc-CCCe
Confidence 9999864 34567899999999999 9988
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.8e-09 Score=107.87 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=83.3
Q ss_pred chhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCccccc
Q 008457 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLS 139 (564)
Q Consensus 61 ~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~ 139 (564)
..+...+.+.+...++.+|||+|||+|.++..++++. ++.+++|+|+++.+++.| .++.+.++|+....
T Consensus 25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------~~~~~~~~D~~~~~-- 94 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------PWAEGILADFLLWE-- 94 (421)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------TTEEEEESCGGGCC--
T ss_pred HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------CCCcEEeCChhhcC--
Confidence 3444555565654567799999999999999999874 568999999999988766 46788899986431
Q ss_pred CCCCCCceeEEEEccccc----------CCChhH-----------------HHHHHHHHHhccCCCeEEEEEec
Q 008457 140 RQISPSSIDIVTMVFVLS----------AVSPEK-----------------MSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 140 ~~~~~~~fD~V~~~~vl~----------~~~~~~-----------------~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+.++||+|+++--+. |++.+. ...+++.+.++|+|||.+++..+
T Consensus 95 ---~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 95 ---PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp ---CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 357899999962221 132221 12679999999999999988754
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.1e-09 Score=99.92 Aligned_cols=89 Identities=16% Similarity=0.088 Sum_probs=72.2
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 141 (564)
.+...+.+.+...++.+|||||||+|.++..|++. +.+|+++|+++.+++.++++.. ...+++++++|+....+
T Consensus 37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~-~~~~v~vi~gD~l~~~~--- 110 (295)
T 3gru_A 37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKE-LYNNIEIIWGDALKVDL--- 110 (295)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHH-HCSSEEEEESCTTTSCG---
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhc-cCCCeEEEECchhhCCc---
Confidence 34455556666678899999999999999999998 6899999999999999998875 34689999999976443
Q ss_pred CCCCceeEEEEccccc
Q 008457 142 ISPSSIDIVTMVFVLS 157 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~ 157 (564)
++.+||+|+++...+
T Consensus 111 -~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 111 -NKLDFNKVVANLPYQ 125 (295)
T ss_dssp -GGSCCSEEEEECCGG
T ss_pred -ccCCccEEEEeCccc
Confidence 456799999875544
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-08 Score=91.31 Aligned_cols=140 Identities=13% Similarity=0.187 Sum_probs=85.7
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC---CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~---~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
++..|.+.+.....+.++.+|||||||+|.++..++... ..+|+++|+++.+ . ..++.+...
T Consensus 6 ~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~----~~~v~~~~~ 70 (201)
T 2plw_A 6 AAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P----IPNVYFIQG 70 (201)
T ss_dssp THHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C----CTTCEEEEC
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C----CCCceEEEc
Confidence 455666655554434577899999999999888888764 3699999998831 1 134556655
Q ss_pred ecCCCc-----------------cchhhh-hhcCCCccEEEEeceeeCC----CCh-------HHHHHHHHHHhhccCCC
Q 008457 437 EWGNRD-----------------HIEAIK-EENNEGFEVILGTDVSYIP----EAI-------LPLFATAKELTASSNKS 487 (564)
Q Consensus 437 ~w~~~~-----------------~~~~~~-~~~~~~fD~Ii~~d~~y~~----~~~-------~~l~~~~~~ll~~~~g~ 487 (564)
|+.+.. ....+. .+...+||+|++.-.+... .+. ..+++.+.++| +|+|
T Consensus 71 d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~L-kpgG- 148 (201)
T 2plw_A 71 EIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYI-NIGG- 148 (201)
T ss_dssp CTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE-EEEE-
T ss_pred cccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHc-cCCC-
Confidence 654432 000111 1355789999975433321 111 23788899999 9988
Q ss_pred CCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 488 LREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 488 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+++.... ......+...+.. .|...++.
T Consensus 149 -------~lv~~~~~-~~~~~~l~~~l~~-~f~~v~~~ 177 (201)
T 2plw_A 149 -------TYIVKMYL-GSQTNNLKTYLKG-MFQLVHTT 177 (201)
T ss_dssp -------EEEEEEEC-STTHHHHHHHHHT-TEEEEEEC
T ss_pred -------EEEEEEeC-CCCHHHHHHHHHH-HHheEEEE
Confidence 77664432 2333455665544 56655554
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-08 Score=96.98 Aligned_cols=137 Identities=18% Similarity=0.105 Sum_probs=87.0
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC-------CCCceEEEEeecCCCccchhhh
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-------FLAKLITKRLEWGNRDHIEAIK 448 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~-------~~~~i~~~~l~w~~~~~~~~~~ 448 (564)
.+++|||||||+|.++..++..+..+|+++|+++.+++.+++|+ ...... ...++++..-|. .+.+.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~-----~~~l~ 148 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDG-----FEFIK 148 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCH-----HHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECch-----HHHhc
Confidence 56899999999998888887775569999999999999999998 321010 124566654332 11122
Q ss_pred hhcCCCccEEEEeceeeCC---CC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCe
Q 008457 449 EENNEGFEVILGTDVSYIP---EA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFR 520 (564)
Q Consensus 449 ~~~~~~fD~Ii~~d~~y~~---~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~ 520 (564)
. .++||+|++ |..... .. ...+++.+.++| +|+| ++++......... ..+.+.+.+. |.
T Consensus 149 ~--~~~fD~Ii~-d~~~~~~~~~~l~~~~~l~~~~~~L-~pgG--------~lv~~~~~~~~~~~~~~~~~~~l~~~-f~ 215 (281)
T 1mjf_A 149 N--NRGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDAL-NNPG--------IYVTQAGSVYLFTDELISAYKEMKKV-FD 215 (281)
T ss_dssp H--CCCEEEEEE-ECCCCC-----TTSHHHHHHHHHHE-EEEE--------EEEEEEEETTTSHHHHHHHHHHHHHH-CS
T ss_pred c--cCCeeEEEE-CCCCCCCcchhhhHHHHHHHHHHhc-CCCc--------EEEEEcCCcccCHHHHHHHHHHHHHH-CC
Confidence 2 568999995 544321 11 377899999999 9988 7766544321122 3445555544 55
Q ss_pred EEEEcCCCCCC
Q 008457 521 LVDKWPSKNSA 531 (564)
Q Consensus 521 ~~~~~~~~~~~ 531 (564)
....+....|.
T Consensus 216 ~v~~~~~~vP~ 226 (281)
T 1mjf_A 216 RVYYYSFPVIG 226 (281)
T ss_dssp EEEEEEECCTT
T ss_pred ceEEEEEecCC
Confidence 55554433333
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-07 Score=97.56 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=82.3
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecC
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG 439 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~ 439 (564)
.+..|.+++.. ..++.+|||||||+|.++..++.. +.+|+++|+++.+++.+++|+..|++ . +.+...|..
T Consensus 277 ~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl----~-v~~~~~d~~ 347 (425)
T 2jjq_A 277 QAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNV----D-AEFEVASDR 347 (425)
T ss_dssp HHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC----C-EEEEECCTT
T ss_pred HHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC----c-EEEEECChH
Confidence 44556666655 447789999999999888777664 66999999999999999999999886 3 666665554
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
+. ...+||+|++ |..+. ...+.+++.+.. | +|+| .+|++....
T Consensus 348 ~~---------~~~~fD~Vv~-dPPr~-g~~~~~~~~l~~-l-~p~g--------ivyvsc~p~ 390 (425)
T 2jjq_A 348 EV---------SVKGFDTVIV-DPPRA-GLHPRLVKRLNR-E-KPGV--------IVYVSCNPE 390 (425)
T ss_dssp TC---------CCTTCSEEEE-CCCTT-CSCHHHHHHHHH-H-CCSE--------EEEEESCHH
T ss_pred Hc---------CccCCCEEEE-cCCcc-chHHHHHHHHHh-c-CCCc--------EEEEECChH
Confidence 32 1127999986 44432 234557777764 7 8876 888875443
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=101.68 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=78.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCc-eEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAK-LITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~-i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
++.+|||++||+|++++.++.. ++.+|+++|+++.+++.+++|++.|++. ++ +.+...| ..+.+.....
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~---~~~v~v~~~D-----a~~~l~~~~~ 123 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP---EDRYEIHGME-----ANFFLRKEWG 123 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC---GGGEEEECSC-----HHHHHHSCCS
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC---CceEEEEeCC-----HHHHHHHhhC
Confidence 5789999999999999988875 4479999999999999999999999974 33 5554332 2222210124
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
.+||+|+ .|. | .....+++.+.++| +++| .++++...
T Consensus 124 ~~fD~V~-lDP-~--g~~~~~l~~a~~~L-k~gG--------ll~~t~t~ 160 (392)
T 3axs_A 124 FGFDYVD-LDP-F--GTPVPFIESVALSM-KRGG--------ILSLTATD 160 (392)
T ss_dssp SCEEEEE-ECC-S--SCCHHHHHHHHHHE-EEEE--------EEEEEECC
T ss_pred CCCcEEE-ECC-C--cCHHHHHHHHHHHh-CCCC--------EEEEEecc
Confidence 5899998 565 4 33467899999999 9877 77777643
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=96.75 Aligned_cols=99 Identities=13% Similarity=0.020 Sum_probs=74.8
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh---
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--- 450 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~--- 450 (564)
++++|||||||+|..+..++... ..+|+++|+++++++.+++|+..++.. +++.+...|.. +.+..+
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~---~~i~~~~gda~-----~~l~~l~~~ 141 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE---HKINFIESDAM-----LALDNLLQG 141 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHH-----HHHHHHHHS
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHH-----HHHHHHHhc
Confidence 56799999999997777776642 569999999999999999999987763 45776654432 111122
Q ss_pred --cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 --NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 --~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..++||+|+.. ........+++.+.++| +|+|
T Consensus 142 ~~~~~~fD~I~~d---~~~~~~~~~l~~~~~~L-~pGG 175 (237)
T 3c3y_A 142 QESEGSYDFGFVD---ADKPNYIKYHERLMKLV-KVGG 175 (237)
T ss_dssp TTCTTCEEEEEEC---SCGGGHHHHHHHHHHHE-EEEE
T ss_pred cCCCCCcCEEEEC---CchHHHHHHHHHHHHhc-CCCe
Confidence 14689999853 23456789999999999 9988
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=103.73 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+..++|+++|+... ...+||+|++.
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~------~~~~fD~Vv~d 360 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREV------SVKGFDTVIVD 360 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTC------CCTTCSEEEEC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHc------CccCCCEEEEc
Confidence 57889999999999999999987 67999999999999999988754443389999998653 12289999995
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
-.-.... ..+++.+. .|+|||.++++.
T Consensus 361 PPr~g~~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 361 PPRAGLH----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp CCTTCSC----HHHHHHHH-HHCCSEEEEEES
T ss_pred CCccchH----HHHHHHHH-hcCCCcEEEEEC
Confidence 4322221 23455554 489999999863
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.79 E-value=7.7e-10 Score=105.46 Aligned_cols=113 Identities=15% Similarity=0.119 Sum_probs=80.6
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 142 (564)
+...+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ...+++++++|+.... +
T Consensus 17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~~----~ 89 (245)
T 1yub_A 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQFQ----F 89 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTTT----C
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhcC----c
Confidence 3345555666678899999999999999999998 5899999999999999887765 2457899999986543 3
Q ss_pred C-CCceeEEEEcccccCCChhHHHH----------HH----HHHHhccCCCeEEEEE
Q 008457 143 S-PSSIDIVTMVFVLSAVSPEKMSL----------VL----QNIKKVLKPTGYVLFR 184 (564)
Q Consensus 143 ~-~~~fD~V~~~~vl~~~~~~~~~~----------~l----~~~~r~LkpgG~lii~ 184 (564)
+ +++| .|+++--.+ .+...... ++ +.+.|+|+|||.+.+.
T Consensus 90 ~~~~~f-~vv~n~Py~-~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 90 PNKQRY-KIVGNIPYH-LSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp CCSSEE-EEEEECCSS-SCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred ccCCCc-EEEEeCCcc-ccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 4 3678 666653322 21122222 22 5578888888887663
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-08 Score=94.29 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=59.6
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcc
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~ 136 (564)
.+...+.+.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... ..+++++++|+...
T Consensus 17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~-~~~v~~~~~D~~~~ 88 (244)
T 1qam_A 17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD-HDNFQVLNKDILQF 88 (244)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT-CCSEEEECCCGGGC
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhcc-CCCeEEEEChHHhC
Confidence 34455556666678899999999999999999998 57999999999999999988653 35799999998654
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-08 Score=106.38 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=89.9
Q ss_pred chhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-------------CCcEEEEEeCChHHHHHHHhcccccCC---
Q 008457 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-------------PDVFVYACDFSPRAVNLVMTHKDFTET--- 124 (564)
Q Consensus 61 ~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-------------~~~~v~~iD~s~~~l~~a~~~~~~~~~--- 124 (564)
..+...+.+.+.+.++.+|||.|||+|.++..+++.. +..+++|+|+++.++..|+.+....+.
T Consensus 157 ~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~ 236 (445)
T 2okc_A 157 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD 236 (445)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcC
Confidence 3455566666776788899999999999998887642 246799999999999999876543332
Q ss_pred CeeEEEecCCcccccCCCCCCceeEEEEcccccCCCh---------------hHHHHHHHHHHhccCCCeEEEEEec
Q 008457 125 RVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSP---------------EKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 125 ~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~---------------~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
++.+.++|..... ...+||+|+++-.+.+... .....+++++.+.|||||++.+..+
T Consensus 237 ~~~i~~gD~l~~~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 237 RSPIVCEDSLEKE-----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CCSEEECCTTTSC-----CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEeeCCCCCCc-----ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 6788899876432 2348999999866554321 1124789999999999999988653
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-08 Score=90.98 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=83.4
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-C---------CEEEEEcCChhHHHHHHHHHHhcCCCCCCC
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-A---------DLVVATDGDSIALDLLAQNVTANLKPPFLA 429 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~---------~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~ 429 (564)
++..|.+.......+.++.+|||||||+|.++..++... . .+|+++|+++.. .. .
T Consensus 6 ~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~----~ 70 (196)
T 2nyu_A 6 SAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL----E 70 (196)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC----T
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC----C
Confidence 344555555444445578899999999998888887763 3 789999999831 11 2
Q ss_pred ceEEE-EeecCCCccchhhh-hhcCCCccEEEEeceeeCCC----Ch-------HHHHHHHHHHhhccCCCCCCCCCcEE
Q 008457 430 KLITK-RLEWGNRDHIEAIK-EENNEGFEVILGTDVSYIPE----AI-------LPLFATAKELTASSNKSLREDQQPAF 496 (564)
Q Consensus 430 ~i~~~-~l~w~~~~~~~~~~-~~~~~~fD~Ii~~d~~y~~~----~~-------~~l~~~~~~ll~~~~g~~~~~~~~~~ 496 (564)
.+.+. ..|+.+......+. .+.+.+||+|++.-.+.... +. ..+++.+.++| +|+| .+
T Consensus 71 ~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~l 141 (196)
T 2nyu_A 71 GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL-QPGG--------TF 141 (196)
T ss_dssp TCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE-EEEE--------EE
T ss_pred CCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHh-cCCC--------EE
Confidence 34444 44443221111111 12345899999753322211 11 47899999999 9988 77
Q ss_pred EEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 497 ILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 497 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
++..... .....+...+... |...++.
T Consensus 142 v~~~~~~-~~~~~~~~~l~~~-f~~v~~~ 168 (196)
T 2nyu_A 142 LCKTWAG-SQSRRLQRRLTEE-FQNVRII 168 (196)
T ss_dssp EEEECCS-GGGHHHHHHHHHH-EEEEEEE
T ss_pred EEEecCC-ccHHHHHHHHHHH-hcceEEE
Confidence 7764433 2234566666553 5544454
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=95.86 Aligned_cols=87 Identities=11% Similarity=0.105 Sum_probs=68.7
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 142 (564)
+...+.+.+...++.+|||||||+|.++..|++. +.+|+++|+++.|++.++++... ..+++++++|+....+..-+
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~-~~~v~~i~~D~~~~~~~~~~ 93 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ-QKNITIYQNDALQFDFSSVK 93 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT-CTTEEEEESCTTTCCGGGSC
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh-CCCcEEEEcchHhCCHHHhc
Confidence 4455566666678999999999999999999988 57999999999999999988754 46899999999776553222
Q ss_pred CCCceeEEEEc
Q 008457 143 SPSSIDIVTMV 153 (564)
Q Consensus 143 ~~~~fD~V~~~ 153 (564)
..++|| |+++
T Consensus 94 ~~~~~~-vv~N 103 (255)
T 3tqs_A 94 TDKPLR-VVGN 103 (255)
T ss_dssp CSSCEE-EEEE
T ss_pred cCCCeE-EEec
Confidence 245788 5554
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-08 Score=99.38 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=86.2
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHh--cCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTA--NLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~--n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.+.+|||||||+|.++..++.. +..+|+++|+++.+++.+++|+.. ++.. ..++++..-|..+ .+ +...
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~--~~~v~~~~~D~~~-----~l-~~~~ 161 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD--DPRAEIVIANGAE-----YV-RKFK 161 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG--CTTEEEEESCHHH-----HG-GGCS
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC--CCceEEEECcHHH-----HH-hhCC
Confidence 4579999999999888888776 457999999999999999999754 2221 2456666544321 11 1234
Q ss_pred CCccEEEEeceeeC-CC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC---hhHHHHHHHHcCCeEEE
Q 008457 453 EGFEVILGTDVSYI-PE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD---EPSMLSAATQCGFRLVD 523 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~-~~-----~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~~g~~~~~ 523 (564)
++||+|++ |+... .. ....+++.+.++| +|+| ++++........ .....+.+.+. |....
T Consensus 162 ~~fD~Ii~-d~~~~~~~~~~~l~~~~~l~~~~~~L-kpgG--------~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~ 230 (296)
T 1inl_A 162 NEFDVIII-DSTDPTAGQGGHLFTEEFYQACYDAL-KEDG--------VFSAETEDPFYDIGWFKLAYRRISKV-FPITR 230 (296)
T ss_dssp SCEEEEEE-EC----------CCSHHHHHHHHHHE-EEEE--------EEEEECCCTTTTHHHHHHHHHHHHHH-CSEEE
T ss_pred CCceEEEE-cCCCcccCchhhhhHHHHHHHHHHhc-CCCc--------EEEEEccCcccCHHHHHHHHHHHHHH-CCceE
Confidence 68999995 43322 11 2378899999999 9988 777754332122 23456666666 44444
Q ss_pred EcC
Q 008457 524 KWP 526 (564)
Q Consensus 524 ~~~ 526 (564)
.+.
T Consensus 231 ~~~ 233 (296)
T 1inl_A 231 VYL 233 (296)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=96.42 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=77.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc--
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-- 451 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~-- 451 (564)
++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++|+..++.. .++.+...+.. +.+..++
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~---~~i~~~~~d~~-----~~l~~l~~~ 143 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA---EKISLRLGPAL-----ATLEQLTQG 143 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHH-----HHHHHHHTS
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHH-----HHHHHHHhc
Confidence 56799999999997777776653 459999999999999999999887763 45666544332 1122222
Q ss_pred C--CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 452 N--EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 452 ~--~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
+ ++||+|++... ......+++.+.++| +|+| .+++..
T Consensus 144 ~~~~~fD~V~~d~~---~~~~~~~l~~~~~~L-kpgG--------~lv~~~ 182 (232)
T 3cbg_A 144 KPLPEFDLIFIDAD---KRNYPRYYEIGLNLL-RRGG--------LMVIDN 182 (232)
T ss_dssp SSCCCEEEEEECSC---GGGHHHHHHHHHHTE-EEEE--------EEEEEC
T ss_pred CCCCCcCEEEECCC---HHHHHHHHHHHHHHc-CCCe--------EEEEeC
Confidence 2 68999985422 456788999999999 9988 776643
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.6e-08 Score=94.32 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=85.3
Q ss_pred CCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 377 GKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
..+|||||||+|.++..++.. ...+|+++|+++.+++.+++++..+. ..++++..-|. .+.+.....++|
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~----~~rv~v~~~Da-----~~~l~~~~~~~f 160 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR----APRVKIRVDDA-----RMVAESFTPASR 160 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC----TTTEEEEESCH-----HHHHHTCCTTCE
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC----CCceEEEECcH-----HHHHhhccCCCC
Confidence 349999999999888888874 45599999999999999999976532 24566654432 222222345789
Q ss_pred cEEEEeceeeC---CC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC--hhHHHHHHHHcCCeEEEEc
Q 008457 456 EVILGTDVSYI---PE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD--EPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 456 D~Ii~~d~~y~---~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~~g~~~~~~~ 525 (564)
|+|++ |+... .. ....+++.++++| +|+| ++++........ ...+...+++. |....++
T Consensus 161 DvIi~-D~~~~~~~~~~L~t~efl~~~~r~L-kpgG--------vlv~~~~~~~~~~~~~~~~~tL~~v-F~~v~~~ 226 (317)
T 3gjy_A 161 DVIIR-DVFAGAITPQNFTTVEFFEHCHRGL-APGG--------LYVANCGDHSDLRGAKSELAGMMEV-FEHVAVI 226 (317)
T ss_dssp EEEEE-CCSTTSCCCGGGSBHHHHHHHHHHE-EEEE--------EEEEEEEECTTCHHHHHHHHHHHHH-CSEEEEE
T ss_pred CEEEE-CCCCccccchhhhHHHHHHHHHHhc-CCCc--------EEEEEecCCcchHHHHHHHHHHHHH-CCceEEE
Confidence 99985 43221 11 1278999999999 9988 666665533221 13456666654 3333343
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.2e-08 Score=91.29 Aligned_cols=105 Identities=10% Similarity=0.012 Sum_probs=73.9
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
....+|||||||+|.++.... ...+|+++|+|+.+++.++.|+..++. ...+...|.... .++++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~-----~~~~~v~D~~~~--------~~~~~ 168 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW-----DFTFALQDVLCA--------PPAEA 168 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC-----EEEEEECCTTTS--------CCCCB
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC-----CceEEEeecccC--------CCCCC
Confidence 357799999999997776665 677999999999999999999998874 345555544332 24569
Q ss_pred ccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC
Q 008457 455 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 505 (564)
Q Consensus 455 fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~ 505 (564)
||+|++..++.+- .....+. .+-+.| ++. .++++++.|..
T Consensus 169 ~DvvLllk~lh~LE~q~~~~~~-~ll~aL-~~~---------~vvVsfPtksl 210 (253)
T 3frh_A 169 GDLALIFKLLPLLEREQAGSAM-ALLQSL-NTP---------RMAVSFPTRSL 210 (253)
T ss_dssp CSEEEEESCHHHHHHHSTTHHH-HHHHHC-BCS---------EEEEEEECC--
T ss_pred cchHHHHHHHHHhhhhchhhHH-HHHHHh-cCC---------CEEEEcChHHh
Confidence 9999999776652 2233444 444466 443 68888886543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.5e-08 Score=102.48 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=94.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-C-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-A-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
.++..++..+. ..++.+|||+|||+|+.+..++... . .+|+++|+++.+++.+++|+..++. .++.+...
T Consensus 246 ~~s~l~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~----~~v~~~~~ 317 (450)
T 2yxl_A 246 EASAVASIVLD----PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI----KIVKPLVK 317 (450)
T ss_dssp HHHHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC----CSEEEECS
T ss_pred chhHHHHHhcC----CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC----CcEEEEEc
Confidence 34455555552 3367899999999999888887753 2 6999999999999999999998876 34666655
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceee-------CC---------CCh-------HHHHHHHHHHhhccCCCCCCCCC
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSY-------IP---------EAI-------LPLFATAKELTASSNKSLREDQQ 493 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y-------~~---------~~~-------~~l~~~~~~ll~~~~g~~~~~~~ 493 (564)
|..+... .+.+++||+|++ |+.+ .. ..+ ..+++.+.++| +|+|
T Consensus 318 D~~~~~~-----~~~~~~fD~Vl~-D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~L-kpGG------- 383 (450)
T 2yxl_A 318 DARKAPE-----IIGEEVADKVLL-DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLV-KPGG------- 383 (450)
T ss_dssp CTTCCSS-----SSCSSCEEEEEE-ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTE-EEEE-------
T ss_pred Chhhcch-----hhccCCCCEEEE-cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhc-CCCc-------
Confidence 5443210 123368999984 2222 11 112 57889999999 9987
Q ss_pred cEEEEEEee--ccCChhHHHHHHHHc-CCeEEEEc
Q 008457 494 PAFILCHIF--RQVDEPSMLSAATQC-GFRLVDKW 525 (564)
Q Consensus 494 ~~~~~~~~~--r~~~~~~~~~~~~~~-g~~~~~~~ 525 (564)
.++++... ....+..+...+.+. ||+.+.+.
T Consensus 384 -~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~~~~ 417 (450)
T 2yxl_A 384 -RLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLK 417 (450)
T ss_dssp -EEEEEESCCCGGGTHHHHHHHHHHCSSCEECCCC
T ss_pred -EEEEEeCCCChhhHHHHHHHHHHhCCCCEEeecc
Confidence 66554332 223333344445555 78776543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.3e-08 Score=94.77 Aligned_cols=113 Identities=10% Similarity=0.081 Sum_probs=82.3
Q ss_pred CCCeEEEeCCcc---cHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc---hhh-
Q 008457 376 AGKKVLELGCGC---GGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI---EAI- 447 (564)
Q Consensus 376 ~~~~vLelG~G~---G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~---~~~- 447 (564)
...+|||||||+ |.+...+.... ..+|+++|+|+.|++.+++++..+ .++.+...|..+.... ..+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~------~~v~~~~~D~~~~~~~~~~~~~~ 150 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD------PNTAVFTADVRDPEYILNHPDVR 150 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC------TTEEEEECCTTCHHHHHHSHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC------CCeEEEEeeCCCchhhhccchhh
Confidence 347999999999 96655554443 469999999999999999987431 4577777666542111 000
Q ss_pred hhhcCCCccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 448 KEENNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 448 ~~~~~~~fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
..+...+||+|+++.++++..+ ...+++.+.++| +|+| .++++....
T Consensus 151 ~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L-~pGG--------~l~i~~~~~ 199 (274)
T 2qe6_A 151 RMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDAL-APGS--------YLFMTSLVD 199 (274)
T ss_dssp HHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHS-CTTC--------EEEEEEEBC
T ss_pred ccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhC-CCCc--------EEEEEEecC
Confidence 1123358999999999887655 899999999999 9988 787776654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-08 Score=94.39 Aligned_cols=106 Identities=11% Similarity=0.045 Sum_probs=75.7
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCC-------CEEEEEcCChhHHHHHHHHHHhcCCC-CCCCceEEEEeecCCCccch
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSA-------DLVVATDGDSIALDLLAQNVTANLKP-PFLAKLITKRLEWGNRDHIE 445 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~-------~~v~~tD~~~~~l~~~~~n~~~n~~~-~~~~~i~~~~l~w~~~~~~~ 445 (564)
+.++.+|||+|||+|.++..++.... .+|+++|+++.+++.+++|+..++.. ....++.+...|..+.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---- 157 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG---- 157 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC----
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC----
Confidence 44778999999999988877776432 59999999999999999998875410 0003466665554321
Q ss_pred hhhhhc-CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 446 AIKEEN-NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 446 ~~~~~~-~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
++ .++||+|++...+.+ +.+.+.++| +|+| .++++...
T Consensus 158 ----~~~~~~fD~I~~~~~~~~------~~~~~~~~L-kpgG--------~lvi~~~~ 196 (227)
T 1r18_A 158 ----YPPNAPYNAIHVGAAAPD------TPTELINQL-ASGG--------RLIVPVGP 196 (227)
T ss_dssp ----CGGGCSEEEEEECSCBSS------CCHHHHHTE-EEEE--------EEEEEESC
T ss_pred ----CCcCCCccEEEECCchHH------HHHHHHHHh-cCCC--------EEEEEEec
Confidence 12 258999998776654 237889999 9988 77777654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.5e-08 Score=99.35 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=90.7
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.+..+|||+|||+|.++..++... ..+++++|+ +.+++.+++. ..+.+...|..+. ++
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~--------~p-- 245 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----------NNLTYVGGDMFTS--------IP-- 245 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----------TTEEEEECCTTTC--------CC--
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----------CCcEEEeccccCC--------CC--
Confidence 356799999999998888877764 458999999 9888766541 2367766665321 12
Q ss_pred CccEEEEeceeeCCCChH--HHHHHHHHHhhcc---CCCCCCCCCcEEEEEEeecc------------------------
Q 008457 454 GFEVILGTDVSYIPEAIL--PLFATAKELTASS---NKSLREDQQPAFILCHIFRQ------------------------ 504 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~--~l~~~~~~ll~~~---~g~~~~~~~~~~~~~~~~r~------------------------ 504 (564)
.||+|++..++++..+.. .+++.+.++| +| +| .+++......
T Consensus 246 ~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L-~p~~~gG--------~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g 316 (352)
T 1fp2_A 246 NADAVLLKYILHNWTDKDCLRILKKCKEAV-TNDGKRG--------KVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNG 316 (352)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-SGGGCCC--------EEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTC
T ss_pred CccEEEeehhhccCCHHHHHHHHHHHHHhC-CCCCCCc--------EEEEEEeecCCCCCccchhhhHhhccHHHHhccC
Confidence 499999999999887776 9999999999 99 77 7766643321
Q ss_pred --CChhHHHHHHHHcCCeEEEEcC
Q 008457 505 --VDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 505 --~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
.+..++.+.++++||++.++..
T Consensus 317 ~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 317 KERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp CCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCCeeEEEe
Confidence 1124566778889999988874
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=8.7e-08 Score=96.95 Aligned_cols=124 Identities=14% Similarity=0.092 Sum_probs=90.8
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.....+|||+|||+|.++..++... ..+++++|+ +.+++.++++ .++.+...|..+. ++.
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~--------~p~ 261 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF----------SGVEHLGGDMFDG--------VPK 261 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------TTEEEEECCTTTC--------CCC
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc----------CCCEEEecCCCCC--------CCC
Confidence 5567899999999998888887765 458999999 8888765431 4577777766431 232
Q ss_pred CCccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------------------
Q 008457 453 EGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------------- 503 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--------------------------- 503 (564)
. |+|++..++++..+ ...+++.+.++| +|+| .+++.....
T Consensus 262 -~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L-~pgG--------~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g 330 (368)
T 3reo_A 262 -G-DAIFIKWICHDWSDEHCLKLLKNCYAAL-PDHG--------KVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGG 330 (368)
T ss_dssp -C-SEEEEESCGGGBCHHHHHHHHHHHHHHS-CTTC--------EEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBC
T ss_pred -C-CEEEEechhhcCCHHHHHHHHHHHHHHc-CCCC--------EEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCC
Confidence 3 99999999987654 458899999999 9988 666654321
Q ss_pred -cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 -QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 -~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+..++.+.++++||+.+++...
T Consensus 331 ~~rt~~e~~~ll~~AGF~~v~~~~~ 355 (368)
T 3reo_A 331 KERTEKEFQALAMASGFRGFKVASC 355 (368)
T ss_dssp CCCCHHHHHHHHHHTTCCEEEEEEE
T ss_pred ccCCHHHHHHHHHHCCCeeeEEEEe
Confidence 112345678888999999998743
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-08 Score=98.56 Aligned_cols=109 Identities=14% Similarity=0.089 Sum_probs=75.8
Q ss_pred CCCeEEEeCCcccH----HHHHHHhc-C----CCEEEEEcCChhHHHHHHHHHHhc----CCC---------------C-
Q 008457 376 AGKKVLELGCGCGG----ICSMVAAG-S----ADLVVATDGDSIALDLLAQNVTAN----LKP---------------P- 426 (564)
Q Consensus 376 ~~~~vLelG~G~G~----l~~~~~~~-~----~~~v~~tD~~~~~l~~~~~n~~~n----~~~---------------~- 426 (564)
+..+|+|+|||||. ++..++.. + ..+|++||+|+.|++.|++++... +.+ .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45699999999996 44444443 2 248999999999999999985210 000 0
Q ss_pred -------CCCceEEEEeecCCCccchhhhhhc-CCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEE
Q 008457 427 -------FLAKLITKRLEWGNRDHIEAIKEEN-NEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAF 496 (564)
Q Consensus 427 -------~~~~i~~~~l~w~~~~~~~~~~~~~-~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~ 496 (564)
....+.+...|+.+. +++ .++||+|++.+++.+. +....+++.+.+.| +|+| .+
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~-------~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L-~pgG--------~L 248 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEK-------QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLL-KPDG--------LL 248 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCS-------SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGE-EEEE--------EE
T ss_pred ceeechhhcccCeEEecccCCC-------CCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHh-CCCc--------EE
Confidence 012577777777642 122 3689999999886443 34589999999999 9988 77
Q ss_pred EEEE
Q 008457 497 ILCH 500 (564)
Q Consensus 497 ~~~~ 500 (564)
++.+
T Consensus 249 ~lg~ 252 (274)
T 1af7_A 249 FAGH 252 (274)
T ss_dssp EECT
T ss_pred EEEe
Confidence 6643
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-08 Score=98.22 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=76.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhc--CCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTAN--LKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n--~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..++|||||||+|.++..++... ..+|+++|+++.+++.+++|+... ++. ..++++...|+.+ .+.....
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~--~~rv~~~~~D~~~-----~l~~~~~ 192 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE--DPRVNLVIGDGVA-----FLKNAAE 192 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG--STTEEEEESCHHH-----HHHTSCT
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC--CCcEEEEECCHHH-----HHHhccC
Confidence 56899999999998888777654 469999999999999999998652 221 1457766555421 1112234
Q ss_pred CCccEEEEecee---eCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 453 EGFEVILGTDVS---YIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 453 ~~fD~Ii~~d~~---y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
++||+|++ |.. ..... ...+++.+.++| +|+| .+++...
T Consensus 193 ~~fDlIi~-d~~~p~~~~~~l~~~~~l~~~~~~L-kpgG--------~lv~~~~ 236 (334)
T 1xj5_A 193 GSYDAVIV-DSSDPIGPAKELFEKPFFQSVARAL-RPGG--------VVCTQAE 236 (334)
T ss_dssp TCEEEEEE-CCCCTTSGGGGGGSHHHHHHHHHHE-EEEE--------EEEEECC
T ss_pred CCccEEEE-CCCCccCcchhhhHHHHHHHHHHhc-CCCc--------EEEEecC
Confidence 68999996 332 11111 478999999999 9988 7776533
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.2e-08 Score=100.44 Aligned_cols=123 Identities=9% Similarity=-0.003 Sum_probs=90.9
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++. .++.+...|..+. ++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~--------~~- 266 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL----------SGIEHVGGDMFAS--------VP- 266 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------TTEEEEECCTTTC--------CC-
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc----------CCCEEEeCCcccC--------CC-
Confidence 4567899999999998888887765 458999999 8888765531 3467766665431 12
Q ss_pred CCccEEEEeceeeCCCChH--HHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------------------
Q 008457 453 EGFEVILGTDVSYIPEAIL--PLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------------- 503 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~--~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--------------------------- 503 (564)
.||+|++..++++..+.. .+++.+.++| +|+| .+++.....
T Consensus 267 -~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L-~pgG--------~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 336 (372)
T 1fp1_D 267 -QGDAMILKAVCHNWSDEKCIEFLSNCHKAL-SPNG--------KVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGR 336 (372)
T ss_dssp -CEEEEEEESSGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCC
T ss_pred -CCCEEEEecccccCCHHHHHHHHHHHHHhc-CCCC--------EEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCc
Confidence 399999999999887776 9999999999 9987 777663221
Q ss_pred cCChhHHHHHHHHcCCeEEEEcC
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~ 526 (564)
..+...+.+.++++||++.++..
T Consensus 337 ~~t~~e~~~ll~~aGf~~~~~~~ 359 (372)
T 1fp1_D 337 ERTEKQYEKLSKLSGFSKFQVAC 359 (372)
T ss_dssp CEEHHHHHHHHHHTTCSEEEEEE
T ss_pred cCCHHHHHHHHHHCCCceEEEEE
Confidence 01223566777889999998874
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.6e-08 Score=100.14 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=88.5
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 360 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 360 ~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
++.+++..+.-. ..++.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|+..++. .++.+...|
T Consensus 103 ~s~l~~~~L~~~--~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~----~nv~~~~~D 176 (479)
T 2frx_A 103 SSMLPVAALFAD--GNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI----SNVALTHFD 176 (479)
T ss_dssp HHHHHHHHHTTT--TCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC----CSEEEECCC
T ss_pred HHHHHHHHhCcc--cCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CcEEEEeCC
Confidence 344555555322 2267899999999999998888753 46999999999999999999999876 346665444
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeC--------CC---------------ChHHHHHHHHHHhhccCCCCCCCCCc
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYI--------PE---------------AILPLFATAKELTASSNKSLREDQQP 494 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--------~~---------------~~~~l~~~~~~ll~~~~g~~~~~~~~ 494 (564)
..+ +....++.||+|++ |+.+. ++ ....+++.+.++| +|+|
T Consensus 177 ~~~------~~~~~~~~fD~Il~-D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~L-kpGG-------- 240 (479)
T 2frx_A 177 GRV------FGAAVPEMFDAILL-DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL-RPGG-------- 240 (479)
T ss_dssp STT------HHHHSTTCEEEEEE-ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHE-EEEE--------
T ss_pred HHH------hhhhccccCCEEEE-CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhc-CCCC--------
Confidence 322 11223468999985 22221 11 1246788899999 9987
Q ss_pred EEEEEEee--ccCChhHHHHHHHHcC
Q 008457 495 AFILCHIF--RQVDEPSMLSAATQCG 518 (564)
Q Consensus 495 ~~~~~~~~--r~~~~~~~~~~~~~~g 518 (564)
+++.+... ..+.+......+++.+
T Consensus 241 ~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 241 TLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp EEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred EEEEecccCCcccCHHHHHHHHHHCC
Confidence 66655433 2233323334445554
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-08 Score=100.69 Aligned_cols=103 Identities=18% Similarity=0.089 Sum_probs=76.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhc---------------CCCCCCCceEEEEeecC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTAN---------------LKPPFLAKLITKRLEWG 439 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n---------------~~~~~~~~i~~~~l~w~ 439 (564)
++.+|||+|||+|.++..++.. ++.+|+++|+++.+++.+++|++.| ++ ..+.+...|..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl----~~i~v~~~Da~ 122 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE----KTIVINHDDAN 122 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS----SEEEEEESCHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC----CceEEEcCcHH
Confidence 6789999999999988888876 5568999999999999999999999 44 22555443321
Q ss_pred CCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 440 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 440 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
..+ .....+||+|+ .|..+ ....+++.+.++| +++| .++++..
T Consensus 123 -----~~~-~~~~~~fD~I~-lDP~~---~~~~~l~~a~~~l-k~gG--------~l~vt~t 165 (378)
T 2dul_A 123 -----RLM-AERHRYFHFID-LDPFG---SPMEFLDTALRSA-KRRG--------ILGVTAT 165 (378)
T ss_dssp -----HHH-HHSTTCEEEEE-ECCSS---CCHHHHHHHHHHE-EEEE--------EEEEEEC
T ss_pred -----HHH-HhccCCCCEEE-eCCCC---CHHHHHHHHHHhc-CCCC--------EEEEEee
Confidence 111 11245899998 67633 3478899999999 9877 7777653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-08 Score=96.13 Aligned_cols=108 Identities=13% Similarity=0.058 Sum_probs=76.5
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
.+++++..... .++.+|||+|||+|.++..++... +.+|+++|+++.+++.++++. .++.+...|+.+.
T Consensus 73 ~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~ 142 (269)
T 1p91_A 73 AIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRL 142 (269)
T ss_dssp HHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSC
T ss_pred HHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcchhhC
Confidence 34444443211 367899999999998887777763 569999999999999998873 2245555554332
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
++.+++||+|++..+ ...++.+.++| +|+| .+++.....
T Consensus 143 -------~~~~~~fD~v~~~~~-------~~~l~~~~~~L-~pgG--------~l~~~~~~~ 181 (269)
T 1p91_A 143 -------PFSDTSMDAIIRIYA-------PCKAEELARVV-KPGG--------WVITATPGP 181 (269)
T ss_dssp -------SBCTTCEEEEEEESC-------CCCHHHHHHHE-EEEE--------EEEEEEECT
T ss_pred -------CCCCCceeEEEEeCC-------hhhHHHHHHhc-CCCc--------EEEEEEcCH
Confidence 234568999998654 23589999999 9988 777766543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-08 Score=96.39 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=85.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHh-cCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTA-NLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~-n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.+++|||||||+|.++..++... ..+|+++|+++.+++.+++|+.. |.......++++...|.. +.+ +...+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~-----~~l-~~~~~ 150 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR-----AYL-ERTEE 150 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH-----HHH-HHCCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHH-----HHH-HhcCC
Confidence 55799999999998888777753 56999999999999999998764 221001145666544321 111 22357
Q ss_pred CccEEEEeceeeCC---C-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-C--C-hhHHHHHHHHcCCeE
Q 008457 454 GFEVILGTDVSYIP---E-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-V--D-EPSMLSAATQCGFRL 521 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~---~-----~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-~--~-~~~~~~~~~~~g~~~ 521 (564)
+||+|++ |..... . ....+++.+.++| +|+| .+++...... . . ...+.+.+++. |..
T Consensus 151 ~fD~Ii~-d~~~~~~~~~~~~~l~~~~~l~~~~~~L-kpgG--------~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~ 219 (314)
T 1uir_A 151 RYDVVII-DLTDPVGEDNPARLLYTVEFYRLVKAHL-NPGG--------VMGMQTGMILLTHHRVHPVVHRTVREA-FRY 219 (314)
T ss_dssp CEEEEEE-ECCCCBSTTCGGGGGSSHHHHHHHHHTE-EEEE--------EEEEEEEEECC---CHHHHHHHHHHTT-CSE
T ss_pred CccEEEE-CCCCcccccCcchhccHHHHHHHHHHhc-CCCc--------EEEEEccCccccCHHHHHHHHHHHHHH-CCc
Confidence 8999996 443322 1 1478899999999 9988 7766543322 1 1 23455666554 444
Q ss_pred EEEc
Q 008457 522 VDKW 525 (564)
Q Consensus 522 ~~~~ 525 (564)
...+
T Consensus 220 v~~~ 223 (314)
T 1uir_A 220 VRSY 223 (314)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4443
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.67 E-value=5e-08 Score=96.77 Aligned_cols=167 Identities=13% Similarity=0.178 Sum_probs=106.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHh----------------CCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA----------------YPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLIS 135 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~----------------~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~ 135 (564)
....+|+|+||++|.++..+... .|..+|+..|+.......+.+...... .+.-|+.+...
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpg- 128 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG- 128 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEES-
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecch-
Confidence 45688999999999888655432 356889999998888877776654211 12344444322
Q ss_pred ccccCCCCCCceeEEEEcccccCCCh-------------------------------hHHHHHHHHHHhccCCCeEEEEE
Q 008457 136 DDLSRQISPSSIDIVTMVFVLSAVSP-------------------------------EKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 136 ~~~~~~~~~~~fD~V~~~~vl~~~~~-------------------------------~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.-....||++++|+|+++.+|||++. .|...+|+..++.|+|||.+++.
T Consensus 129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 21233578999999999999999852 24566799999999999999998
Q ss_pred ecCCCchhh---------hhhccccccc-ccceeec----CCCceeeccCHHHHHHHHHhCC-CcEEEeeee
Q 008457 185 DYAIGDLAQ---------ERLTGKDQKI-SENFYVR----GDGTRAFYFSNDFLTSLFKENG-FDVEELGLC 241 (564)
Q Consensus 185 ~~~~~~~~~---------~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~ 241 (564)
..+.++... ..+...+..+ .++.... .-....|+.+.++++..+++.| |.+......
T Consensus 209 ~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~ 280 (359)
T 1m6e_X 209 ILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp EEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred EecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 776544210 0000000000 0000000 0123345678999999999985 577766554
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.3e-08 Score=95.51 Aligned_cols=93 Identities=15% Similarity=0.228 Sum_probs=73.1
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc-cC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL-SR 140 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~-~~ 140 (564)
.+.....+.+...++.+|||+|||+|.++..+++..|+.+|+|+|.|+.|++.|+++....+.++.++++|+..... ..
T Consensus 13 vLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 13 VMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 92 (301)
T ss_dssp TTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 44556666776678899999999999999999999877899999999999999999876555789999999864321 00
Q ss_pred CCCCCceeEEEEcc
Q 008457 141 QISPSSIDIVTMVF 154 (564)
Q Consensus 141 ~~~~~~fD~V~~~~ 154 (564)
....++||.|++..
T Consensus 93 ~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 93 TLGIEKVDGILMDL 106 (301)
T ss_dssp HTTCSCEEEEEEEC
T ss_pred hcCCCCCCEEEEcC
Confidence 11125799999854
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-07 Score=95.46 Aligned_cols=124 Identities=15% Similarity=0.050 Sum_probs=90.9
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..+..+|||+|||+|.++..++... ..+++++|+ +.+++.++++ .++.+...|..+. ++.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~--------~p~ 259 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF----------PGVTHVGGDMFKE--------VPS 259 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------TTEEEEECCTTTC--------CCC
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc----------CCeEEEeCCcCCC--------CCC
Confidence 4567899999999998888877765 458999999 8887755431 4677777776531 233
Q ss_pred CCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------------------
Q 008457 453 EGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------------- 503 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--------------------------- 503 (564)
. |+|++..++++.. ....+++.++++| +|+| .+++.....
T Consensus 260 -~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L-~pgG--------~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g 328 (364)
T 3p9c_A 260 -G-DTILMKWILHDWSDQHCATLLKNCYDAL-PAHG--------KVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGG 328 (364)
T ss_dssp -C-SEEEEESCGGGSCHHHHHHHHHHHHHHS-CTTC--------EEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred -C-CEEEehHHhccCCHHHHHHHHHHHHHHc-CCCC--------EEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCC
Confidence 3 9999999998764 4568999999999 9988 666653321
Q ss_pred -cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 -QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 -~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+..++.+.++++||+..++...
T Consensus 329 ~~rt~~e~~~ll~~AGF~~v~~~~~ 353 (364)
T 3p9c_A 329 RERYEREFQALARGAGFTGVKSTYI 353 (364)
T ss_dssp CCCBHHHHHHHHHHTTCCEEEEEEE
T ss_pred ccCCHHHHHHHHHHCCCceEEEEEc
Confidence 112345677888999999988743
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=8.5e-08 Score=91.95 Aligned_cols=99 Identities=14% Similarity=0.048 Sum_probs=73.5
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 142 (564)
+...+.+.+...++ +|||||||+|.++..|++. +.+|+++|+++.|++.++++.. ..+++++++|+...++..
T Consensus 35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~--~~~v~vi~~D~l~~~~~~-- 107 (271)
T 3fut_A 35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLS--GLPVRLVFQDALLYPWEE-- 107 (271)
T ss_dssp HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTT--TSSEEEEESCGGGSCGGG--
T ss_pred HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcC--CCCEEEEECChhhCChhh--
Confidence 44555566666777 9999999999999999998 5789999999999999998875 368999999997654421
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHH
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQN 170 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~ 170 (564)
...+|.|+++.-. +++..-+..++..
T Consensus 108 -~~~~~~iv~NlPy-~iss~il~~ll~~ 133 (271)
T 3fut_A 108 -VPQGSLLVANLPY-HIATPLVTRLLKT 133 (271)
T ss_dssp -SCTTEEEEEEECS-SCCHHHHHHHHHH
T ss_pred -ccCccEEEecCcc-cccHHHHHHHhcC
Confidence 1257888887654 4443344444443
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=98.05 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=92.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
.++..++..+. ..++.+|||+|||+|+.+..++.... .+|+++|+++.+++.+++|+..++.. +.+...|
T Consensus 233 ~~s~~~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~-----~~~~~~D 303 (429)
T 1sqg_A 233 ASAQGCMTWLA----PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-----ATVKQGD 303 (429)
T ss_dssp HHHHTHHHHHC----CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-----CEEEECC
T ss_pred HHHHHHHHHcC----CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC-----eEEEeCc
Confidence 34555555553 23678999999999999988887654 69999999999999999999988752 4555555
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeC-------CCC---------h-------HHHHHHHHHHhhccCCCCCCCCCc
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYI-------PEA---------I-------LPLFATAKELTASSNKSLREDQQP 494 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-------~~~---------~-------~~l~~~~~~ll~~~~g~~~~~~~~ 494 (564)
..+.. ..+.+++||+|++ |..+. ... + ..+++.+.++| +|+|
T Consensus 304 ~~~~~-----~~~~~~~fD~Vl~-D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~L-kpGG-------- 368 (429)
T 1sqg_A 304 GRYPS-----QWCGEQQFDRILL-DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL-KTGG-------- 368 (429)
T ss_dssp TTCTH-----HHHTTCCEEEEEE-ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGE-EEEE--------
T ss_pred hhhch-----hhcccCCCCEEEE-eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc-CCCC--------
Confidence 44321 1134568999985 32221 111 1 47788889999 9987
Q ss_pred EEEEEEe--eccCChhHHHHHHHHc-CCeEEE
Q 008457 495 AFILCHI--FRQVDEPSMLSAATQC-GFRLVD 523 (564)
Q Consensus 495 ~~~~~~~--~r~~~~~~~~~~~~~~-g~~~~~ 523 (564)
.++++.. .....+..+...+.+. +|++..
T Consensus 369 ~lvystcs~~~~ene~~v~~~l~~~~~~~~~~ 400 (429)
T 1sqg_A 369 TLVYATCSVLPEENSLQIKAFLQRTADAELCE 400 (429)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHHHCTTCEECS
T ss_pred EEEEEECCCChhhHHHHHHHHHHhCCCCEEeC
Confidence 6666543 2333333344444454 676643
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-07 Score=94.51 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=81.2
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC---------------------------------------CEEE
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA---------------------------------------DLVV 403 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~---------------------------------------~~v~ 403 (564)
.||..|.......++.+|||+|||+|.+.+.++.... .+|+
T Consensus 182 ~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 182 TLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 4677666655556788999999999988887765422 4799
Q ss_pred EEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC-----CChHHHHHHHH
Q 008457 404 ATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP-----EAILPLFATAK 478 (564)
Q Consensus 404 ~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~l~~~~~ 478 (564)
++|+++.+++.++.|+..+++. +.+.+...|..+.. .+.+||+|+++ ..|.. ..+..+.+.+.
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~---~~i~~~~~D~~~l~--------~~~~~D~Iv~N-PPyg~rl~~~~~l~~ly~~lg 329 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVD---EYIEFNVGDATQFK--------SEDEFGFIITN-PPYGERLEDKDSVKQLYKELG 329 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCG---GGEEEEECCGGGCC--------CSCBSCEEEEC-CCCCCSHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHcCCC---CceEEEECChhhcC--------cCCCCcEEEEC-CCCcCccCCHHHHHHHHHHHH
Confidence 9999999999999999999874 46777766654321 23589998854 45653 34667788888
Q ss_pred HHhhcc
Q 008457 479 ELTASS 484 (564)
Q Consensus 479 ~ll~~~ 484 (564)
+.| ++
T Consensus 330 ~~l-k~ 334 (385)
T 3ldu_A 330 YAF-RK 334 (385)
T ss_dssp HHH-HT
T ss_pred HHH-hh
Confidence 888 65
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-07 Score=93.45 Aligned_cols=71 Identities=23% Similarity=0.194 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
+..+..++...... .+.+|||||||+|.++..++. .+.+|+++|+++.+++.+++|+..|++ .++.+...|
T Consensus 199 ~~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~----~~v~~~~~d 269 (369)
T 3bt7_A 199 NIQMLEWALDVTKG-SKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHI----DNVQIIRMA 269 (369)
T ss_dssp HHHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTC----CSEEEECCC
T ss_pred HHHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEECC
Confidence 45566666554332 367899999999988876654 567999999999999999999999987 346655443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.62 E-value=5.6e-08 Score=95.61 Aligned_cols=139 Identities=18% Similarity=0.127 Sum_probs=83.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..++|||||||+|.++..++... ..+|+++|+++.+++.+++|+..........++++...|. .+.+ +...++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~-----~~~l-~~~~~~ 181 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG-----FEFL-KNHKNE 181 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH-----HHHH-HHCTTC
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChH-----HHHH-HhcCCC
Confidence 45799999999998888777653 5799999999999999999976531000124566654332 1112 124568
Q ss_pred ccEEEEeceeeC---CC-Ch-HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEEEEcC
Q 008457 455 FEVILGTDVSYI---PE-AI-LPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 455 fD~Ii~~d~~y~---~~-~~-~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~~~ 526 (564)
||+|++ |.... .. .. ..+++.+.++| +|+| ++++......... ....+.+++. |...+++.
T Consensus 182 fD~Ii~-d~~~~~~~~~~l~t~~~l~~~~~~L-kpgG--------~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~~ 250 (314)
T 2b2c_A 182 FDVIIT-DSSDPVGPAESLFGQSYYELLRDAL-KEDG--------ILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQ 250 (314)
T ss_dssp EEEEEE-CCC-------------HHHHHHHHE-EEEE--------EEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEE
T ss_pred ceEEEE-cCCCCCCcchhhhHHHHHHHHHhhc-CCCe--------EEEEECCCcccCHHHHHHHHHHHHHH-CCcceEEE
Confidence 999995 44221 11 12 78899999999 9988 7766542221121 2344555444 54444443
Q ss_pred CCCCC
Q 008457 527 SKNSA 531 (564)
Q Consensus 527 ~~~~~ 531 (564)
...|.
T Consensus 251 ~~iP~ 255 (314)
T 2b2c_A 251 SIVST 255 (314)
T ss_dssp EECTT
T ss_pred EEecC
Confidence 33333
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.2e-07 Score=93.07 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=78.6
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC---------------------------------------CEEE
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA---------------------------------------DLVV 403 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~---------------------------------------~~v~ 403 (564)
.||..+.......++..|||.|||+|.+.+.++.... .+|+
T Consensus 188 ~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 188 TMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 4555555444445778999999999988877775432 3599
Q ss_pred EEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC-----CChHHHHHHHH
Q 008457 404 ATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP-----EAILPLFATAK 478 (564)
Q Consensus 404 ~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~l~~~~~ 478 (564)
++|+|+.+++.++.|+..+++. +.+.+...|..+.. .+.+||+|++ +..|.. ..+..+.+.+.
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~---~~I~~~~~D~~~~~--------~~~~fD~Iv~-NPPYg~rl~~~~~l~~ly~~lg 335 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLG---DLITFRQLQVADFQ--------TEDEYGVVVA-NPPYGERLEDEEAVRQLYREMG 335 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCT---TCSEEEECCGGGCC--------CCCCSCEEEE-CCCCCCSHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHcCCC---CceEEEECChHhCC--------CCCCCCEEEE-CCCCccccCCchhHHHHHHHHH
Confidence 9999999999999999999875 45677666554321 2358999885 556653 34566778888
Q ss_pred HHhhcc
Q 008457 479 ELTASS 484 (564)
Q Consensus 479 ~ll~~~ 484 (564)
+.| ++
T Consensus 336 ~~l-k~ 340 (393)
T 3k0b_A 336 IVY-KR 340 (393)
T ss_dssp HHH-HT
T ss_pred HHH-hc
Confidence 888 65
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.5e-07 Score=90.37 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=79.7
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC---------------------------------------CEEE
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA---------------------------------------DLVV 403 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~---------------------------------------~~v~ 403 (564)
.||..|.......++..|||.+||+|.+.+.++.... .+|+
T Consensus 181 ~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 181 NMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 4666555544445788999999999998887775432 3599
Q ss_pred EEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCC-----ChHHHHHHHH
Q 008457 404 ATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE-----AILPLFATAK 478 (564)
Q Consensus 404 ~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~l~~~~~ 478 (564)
++|+|+.+++.+++|+..+++. +.+.+...|..+.. .+.+||+|+ +|..|... .+..|.+.+.
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~---~~I~~~~~D~~~l~--------~~~~fD~Iv-~NPPYG~rl~~~~~l~~ly~~lg 328 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLE---DVVKLKQMRLQDFK--------TNKINGVLI-SNPPYGERLLDDKAVDILYNEMG 328 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCT---TTEEEEECCGGGCC--------CCCCSCEEE-ECCCCTTTTSCHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHcCCC---CceEEEECChHHCC--------ccCCcCEEE-ECCchhhccCCHHHHHHHHHHHH
Confidence 9999999999999999999875 45777666554321 234899988 56667533 4667888888
Q ss_pred HHhhcc
Q 008457 479 ELTASS 484 (564)
Q Consensus 479 ~ll~~~ 484 (564)
+.| ++
T Consensus 329 ~~l-k~ 333 (384)
T 3ldg_A 329 ETF-AP 333 (384)
T ss_dssp HHH-TT
T ss_pred HHH-hh
Confidence 888 65
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-07 Score=93.93 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=85.1
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCC--------------------------------------cEEEEEeCChH
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD--------------------------------------VFVYACDFSPR 110 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~--------------------------------------~~v~~iD~s~~ 110 (564)
.+....++..|||.+||+|.++...+....+ .+++|+|+++.
T Consensus 188 ~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~ 267 (384)
T 3ldg_A 188 LLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGR 267 (384)
T ss_dssp HHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHH
T ss_pred HHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHH
Confidence 3344467889999999999999887765322 46999999999
Q ss_pred HHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEEEccccc--CCChhHHHHHHHHHHhccCC--CeEEEEE
Q 008457 111 AVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLS--AVSPEKMSLVLQNIKKVLKP--TGYVLFR 184 (564)
Q Consensus 111 ~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~--~~~~~~~~~~l~~~~r~Lkp--gG~lii~ 184 (564)
|++.|+++....+ ..+++.+.|+.... ...+||+|+++--+. .-...+...+++++.+.||+ ||.+++.
T Consensus 268 al~~Ar~Na~~~gl~~~I~~~~~D~~~l~-----~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 342 (384)
T 3ldg_A 268 MVEIARKNAREVGLEDVVKLKQMRLQDFK-----TNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFIL 342 (384)
T ss_dssp HHHHHHHHHHHTTCTTTEEEEECCGGGCC-----CCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCceEEEECChHHCC-----ccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 9999999875444 46899999996532 235899999974332 22345677888888888877 8888876
Q ss_pred ecC
Q 008457 185 DYA 187 (564)
Q Consensus 185 ~~~ 187 (564)
+..
T Consensus 343 t~~ 345 (384)
T 3ldg_A 343 TND 345 (384)
T ss_dssp ESC
T ss_pred ECC
Confidence 553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 564 | ||||
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 2e-28 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 5e-20 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 4e-12 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 4e-09 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 2e-08 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-08 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-08 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 3e-08 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 5e-08 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 5e-08 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-07 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 2e-07 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 3e-07 | |
| d1af7a2 | 193 | c.66.1.8 (A:92-284) Chemotaxis receptor methyltran | 7e-07 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 1e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 2e-06 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 4e-06 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 4e-06 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 6e-06 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 2e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 2e-05 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 4e-05 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 9e-05 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 3e-04 | |
| d1vlma_ | 208 | c.66.1.41 (A:) Possible histamine N-methyltransfer | 1e-04 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 5e-04 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 5e-04 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 5e-04 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 5e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 6e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 8e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.001 | |
| d2oyra1 | 250 | c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shi | 0.001 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 0.001 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 0.003 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 0.003 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 0.003 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 0.003 |
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (279), Expect = 2e-28
Identities = 37/246 (15%), Positives = 69/246 (28%), Gaps = 57/246 (23%)
Query: 34 RDKYER-EAKKYWDLFYKRHQDRFFKDRHYLD---KEWGRYFSGAGRKDVLEVGCGAGNT 89
Y+R E + Y Y + + + F+ + G+G T
Sbjct: 7 ASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPT 66
Query: 90 IFPLIAAYPDV-FVYACDFSPRAVNLVM-----THKDFTETRVSTFVCDLISDDLSRQIS 143
++ L++A + DF + F + S C + Q
Sbjct: 67 VYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDK 126
Query: 144 ----------------------------PSSIDIVTMVFVLSAVS--PEKMSLVLQNIKK 173
P D + F L AVS L +I
Sbjct: 127 ERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITT 186
Query: 174 VLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGT-RAFYFSNDFLTSLFKENG 232
+L+P G++L + E++Y+ G+ S + + +G
Sbjct: 187 LLRPGGHLLLIGA----------------LEESWYLAGEARLTVVPVSEEEVREALVRSG 230
Query: 233 FDVEEL 238
+ V +L
Sbjct: 231 YKVRDL 236
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.4 bits (215), Expect = 5e-20
Identities = 34/244 (13%), Positives = 69/244 (28%), Gaps = 55/244 (22%)
Query: 34 RDKYERE--AKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSGAGRKDVLEVGCGAGNT 89
D+Y++ + Y +Y + + + + F G + + G+G T
Sbjct: 4 GDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPT 63
Query: 90 IFPLIAAYP-DVFVYACDFSPRAVNLVMTH-----KDFTETRVSTFVC------------ 131
I+ ++AA + DF+ R + + T F C
Sbjct: 64 IYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEK 123
Query: 132 --------------DLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSL--VLQNIKKVL 175
D+ + D V + + + L N+ +L
Sbjct: 124 EEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLL 183
Query: 176 KPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGT-RAFYFSNDFLTSLFKENGFD 234
KP G+++ + Y+ G + + GFD
Sbjct: 184 KPGGHLVTTVT----------------LRLPSYMVGKREFSCVALEKGEVEQAVLDAGFD 227
Query: 235 VEEL 238
+E+L
Sbjct: 228 IEQL 231
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.0 bits (157), Expect = 4e-12
Identities = 35/210 (16%), Positives = 70/210 (33%), Gaps = 18/210 (8%)
Query: 21 IYPTPNTGVSPF-WRDKY-EREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD 78
+Y T + GV+ D+Y + EA + W L+ + R + + +L ++ G
Sbjct: 4 VYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQH----GCHR 59
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAV---NLVMTHKDFTETRVSTFVCDLIS 135
VL+V CG G L+ V K+ + + ++
Sbjct: 60 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119
Query: 136 DDLSRQISPSSIDIVTMVFVLSAVSPEKMSL-----VLQNIKKVLKPTGYVLFRDYAIGD 190
D ++ + + + K L+NI +++P G ++
Sbjct: 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN--- 176
Query: 191 LAQERLTGKDQKISENFYVRGDGTRAFYFS 220
L+ +N Y + D T+ S
Sbjct: 177 -YDYILSTGCAPPGKNIYYKSDLTKDITTS 205
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 55.5 bits (132), Expect = 4e-09
Identities = 27/204 (13%), Positives = 59/204 (28%), Gaps = 8/204 (3%)
Query: 35 DKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLI 94
+ Y A+ Y+D Y+R +R + ++++ + R+ VL++ CG G L
Sbjct: 3 ELYTLLAE-YYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRR-VLDLACGTGIPTLELA 60
Query: 95 AAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154
+V + + + L D L +
Sbjct: 61 ERGYEVVGLDLHEEM------LRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFS 114
Query: 155 VLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGT 214
+ E + + + + LKP G + ++ +++ E V D
Sbjct: 115 TIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWR 174
Query: 215 RAFYFSNDFLTSLFKENGFDVEEL 238
+ E+
Sbjct: 175 EVEPAVQKLRFKRLVQILRPNGEV 198
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 53.4 bits (127), Expect = 2e-08
Identities = 28/211 (13%), Positives = 62/211 (29%), Gaps = 29/211 (13%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYL---DKEWGRYF----SGAGRKDVLEVGCGA 86
+ +A +YW ++ D E R F G G L+ G G
Sbjct: 46 EKGWYGKALEYWRTVPA-TVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGI 104
Query: 87 GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS 146
G L+ + + +++ + + P++
Sbjct: 105 GRITKNLLTKLYAT-TDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPPNT 158
Query: 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISEN 206
D++ + + ++ ++ ++ L P GY+ F++
Sbjct: 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG-------------DRF 205
Query: 207 FYVRGDGTRAFYFSNDFLTSLFKENGFDVEE 237
+ D + S+ LF E+G V +
Sbjct: 206 LVDKEDSS--LTRSDIHYKRLFNESGVRVVK 234
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (128), Expect = 2e-08
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 5/109 (4%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFV-----CDL 133
+++G G G + + AA Y + + T + + L
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214
Query: 134 ISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182
D + I +++FV + ++ L+ +K G ++
Sbjct: 215 ERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 263
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 52.7 bits (125), Expect = 2e-08
Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 13/162 (8%)
Query: 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
++VL+V G G+ V A D + + + + + +V
Sbjct: 17 EEVLDVATGGGHVANAFAPFVKK--VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 74
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL 196
+ + + +VLK G +L D + +
Sbjct: 75 MPFTDERFHIVTCRIAAH-----HFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFD- 128
Query: 197 TGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 238
D + + + +E GF++EEL
Sbjct: 129 -----VFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 165
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 52.4 bits (124), Expect = 3e-08
Identities = 35/210 (16%), Positives = 76/210 (36%), Gaps = 16/210 (7%)
Query: 35 DKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLI 94
+Y R Y D+ + ++ R L+ +Y G+ VL++ CG G F L
Sbjct: 3 KEYYRVFPTYTDINSQEYRSRI----ETLEPLLMKYMKKRGK--VLDLACGVGGFSFLLE 56
Query: 95 AAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154
+V + + V ++ D + D V +
Sbjct: 57 DYGFEVVGVDISEDM------IRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFID 110
Query: 155 VLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLA----QERLTGKDQKISENFYVR 210
+ P +++ V + +++VLKP+G + + +L + + G+ IS+ +
Sbjct: 111 SIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQ 170
Query: 211 GDGTRAFYFSNDFLTSLFKENGFDVEELGL 240
+ T F ++ + + N + + L
Sbjct: 171 EERTVVIEFKSEQDSFRVRFNVWGKTGVEL 200
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 51.1 bits (121), Expect = 5e-08
Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 9/136 (6%)
Query: 54 DRFFKDRHYLDKEWGRYFSGAGR---KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPR 110
+ +F +++ L + + A L++GCG G L A DV + + +
Sbjct: 6 ENYFTEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASM 65
Query: 111 AVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQN 170
A + + + + V D + V+ + + + ++ N
Sbjct: 66 ANLERIKAAEGLDNLQTDLVDLNTLTF------DGEYDFILSTVVMMFLEAQTIPGLIAN 119
Query: 171 IKKVLKPTGYVLFRDY 186
+++ KP GY L
Sbjct: 120 MQRCTKPGGYNLIVAA 135
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 51.9 bits (123), Expect = 5e-08
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 15/161 (9%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
VL++G GAG+T + D + V + + F
Sbjct: 20 VLDIGAGAGHTALAFSPYVQE--CIGVDATKEMVEVASSFAQEKGVENVRFQQG---TAE 74
Query: 139 SRQISPSSIDIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT 197
S S DI+T + S K ++ + +VLK G L D+ +
Sbjct: 75 SLPFPDDSFDIITCRYAAHHFSDVRKA---VREVARVLKQDGRFLLVDHYAPEDPVLD-- 129
Query: 198 GKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 238
+ + D + S ++F N +++
Sbjct: 130 ----EFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI 166
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.0 bits (124), Expect = 1e-07
Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL-------VMTHKDFTETRVSTFVC 131
+++G G GN + + C+ A +L + R++
Sbjct: 220 FMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 279
Query: 132 DLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185
L + I ++ V + + E ++ ++ I + K ++
Sbjct: 280 SLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK 333
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 50.6 bits (120), Expect = 2e-07
Identities = 28/199 (14%), Positives = 55/199 (27%), Gaps = 17/199 (8%)
Query: 49 YKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVF-VYACDF 107
Y ++ + + Y+ + +++ GCG G L+ P+ D
Sbjct: 1 YLKNTRDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDS 60
Query: 108 SPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLV 167
+ D +L DI L +
Sbjct: 61 GETLLAEARELFRLLPYDSEFLEGDATEIEL-----NDKYDIAICHAFLL--HMTTPETM 113
Query: 168 LQNIKKVLKPTGYVLFRD-YAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDF--- 223
LQ + +K G ++ + + I ++A L G+ Q V + N
Sbjct: 114 LQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 173
Query: 224 ----LTSLFKENGF-DVEE 237
+ E G ++E
Sbjct: 174 IGMKIPIYLSELGVKNIEC 192
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 49.2 bits (116), Expect = 3e-07
Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 16/182 (8%)
Query: 60 RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK 119
++ + + +F ++LE+G G+ L + D + + S A++
Sbjct: 8 HPFMVRAFTPFFRP---GNLLELGSFKGDFTSRLQEHFND--ITCVEASEEAISHAQGRL 62
Query: 120 DFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTG 179
T + + P D + + VL + + ++L+ + L G
Sbjct: 63 KDGITYIHSRFE--------DAQLPRRYDNIVLTHVLEHI-DDPVALLKRINDDWLAEGG 113
Query: 180 YVLFRDYAIGDLAQER--LTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE 237
+ ++++ G S ++ D L G V
Sbjct: 114 RLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 173
Query: 238 LG 239
Sbjct: 174 RS 175
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 47.9 bits (113), Expect = 7e-07
Identities = 22/166 (13%), Positives = 40/166 (24%), Gaps = 38/166 (22%)
Query: 55 RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVF--------VYACD 106
FF++ H+ G V G + + D V+A D
Sbjct: 4 AFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASD 63
Query: 107 FSPR----------------AVNLVMTHKDFTETRVSTFVCDLISDDLSRQI-------- 142
++ + F + +L+ +
Sbjct: 64 IDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLL 123
Query: 143 -----SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183
P D + V+ +L+ +LKP G LF
Sbjct: 124 EKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGL-LF 168
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 1e-06
Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 24/215 (11%)
Query: 36 KYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIA 95
KY +++ + HQ L GR +L +G GAG +++
Sbjct: 2 KYVESFRRFLN-HSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILS 60
Query: 96 AY------PDVFVYACDFSPRAVNLVMTH------KDFTETRVSTFVCDLISDDLSRQIS 143
+ + S + + + + +
Sbjct: 61 KVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120
Query: 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKI 203
D + M+ +L V + + L+ +L +L + + K+
Sbjct: 121 LQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSG--------SSGWDKL 170
Query: 204 SENFYVR-GDGTRAFYFSNDFLTSLFKENGFDVEE 237
+ + R Y ++D LT + G E
Sbjct: 171 WKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYEC 205
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 24/155 (15%)
Query: 46 DLFYKRHQDRFFKDRHYLD-----KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDV 100
++ R F HY R VL++GCG G A P++
Sbjct: 52 EMMQARR--AFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEI 109
Query: 101 FVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVS 160
+ D S A+ V++ SD S+D + ++
Sbjct: 110 TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDT--------SMDAIIRIYAPCK-- 159
Query: 161 PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQER 195
+ + +V+KP G+V+ L + +
Sbjct: 160 -------AEELARVVKPGGWVITATPGPRHLMELK 187
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 45.6 bits (107), Expect = 4e-06
Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 8/124 (6%)
Query: 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRV 126
W F G +EVG G G + + PD+ D ++ +
Sbjct: 24 WRDLF-GNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN 82
Query: 127 STFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSL------VLQNIKKVLKPTGY 180
+ DL+ ID + + F L K++L G
Sbjct: 83 IKLLWV-DGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGE 141
Query: 181 VLFR 184
+ F+
Sbjct: 142 IHFK 145
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 46.1 bits (108), Expect = 4e-06
Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 19/186 (10%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
+L++G G+G + A + D S K E + I +D
Sbjct: 37 ILDLGSGSGEMLCTW-ARDHGITGTGIDMSSLF---TAQAKRRAEELGVSERVHFIHNDA 92
Query: 139 SRQISPSSIDIVTMVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT 197
+ ++ D+ V + + + LKP G +L + L
Sbjct: 93 AGYVANEKCDVAACVGATWIAGGFAGAE---ELLAQSLKPGGIMLIGEPYWRQLPATE-- 147
Query: 198 GKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENR--ARELVMN 255
E G + + + + L F + G+DV E+ L ++ +R A + +
Sbjct: 148 -------EIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYEAAKWLTM 200
Query: 256 RRWVQA 261
RRW++A
Sbjct: 201 RRWLEA 206
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 45.1 bits (106), Expect = 6e-06
Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 6/109 (5%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
VL +G +G T+ L + +YA ++S + + + + D
Sbjct: 60 VLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFE-KLLELVRERNNIIPLLFDASKPWK 118
Query: 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187
++ V +++ ++ ++ N + LK G V+ A
Sbjct: 119 YSG----IVEKVDLIY-QDIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 31/214 (14%)
Query: 35 DKYEREAKKYWD-----------LFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVG 83
++ +AK YW + R +L + + G L+ G
Sbjct: 9 KQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCG 68
Query: 84 CGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143
G G L+ V D + + T+ RV + C + D S
Sbjct: 69 AGIGRITKRLLLPLFRE-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDS 127
Query: 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKI 203
I I ++ ++ + ++ L+ K L+P G ++ +D +
Sbjct: 128 YDVIWIQWVIGH---LTDQHLAEFLRRCKGSLRPNGIIVIKDN----------------M 168
Query: 204 SENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE 237
++ + D + D + + G +
Sbjct: 169 AQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA 202
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 24/228 (10%), Positives = 64/228 (28%), Gaps = 36/228 (15%)
Query: 37 YEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA 96
Y + A Y L + + D ++ ++ L++ CG GN L
Sbjct: 3 YNKFAHIYDKLIRADVDYKKWSD--FIIEKCVENNLVFDD--YLDLACGTGNLTENLCPK 58
Query: 97 YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVL 156
+ + + + + R++ ++ + + +D +
Sbjct: 59 FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYII-- 116
Query: 157 SAVSPEKMSLVLQNIKKVLKPTGYVLF------------RDYAIGDLAQE-------RLT 197
+ + + + LK G +F + E +
Sbjct: 117 ---DSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFE 173
Query: 198 GKDQKISENFYVR-GDGTRAF-------YFSNDFLTSLFKENGFDVEE 237
+ +F+VR G+ + F + + + K ++ +
Sbjct: 174 DDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILD 221
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 42.6 bits (99), Expect = 4e-05
Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 8/145 (5%)
Query: 46 DLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYAC 105
D F + D + +W F G +EVG G G I + PD+
Sbjct: 1 DDFLAENADIAISNPADYKGKWNTVF-GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGI 59
Query: 106 DFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMS 165
+ + + +E + + P + V + F
Sbjct: 60 ELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-DVFEPGEVKRVYLNFSDPWPKKRHEK 118
Query: 166 LV------LQNIKKVLKPTGYVLFR 184
L+ ++V+ G + F+
Sbjct: 119 RRLTYSHFLKKYEEVMGKGGSIHFK 143
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 9e-05
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF 427
+ +NP I K VL++GCG G + A A V+ D I + L+
Sbjct: 27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTI 86
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 3e-04
Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 3/106 (2%)
Query: 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
K VL+VGCG G A V D S + + T + I +
Sbjct: 37 KVVLDVGCGTGILSMFAAKAGAKK-VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEE 95
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182
I++ + + VL K L G V
Sbjct: 96 V--HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 26/204 (12%), Positives = 58/204 (28%), Gaps = 33/204 (16%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
+ER +Y + ++ H+ + + + +E+G G
Sbjct: 3 WHIFERFVNEY-ERWFLVHRFAYLSELQAVKCLLPE-------GRGVEIGVG------TG 48
Query: 94 IAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153
A P + S R + F + + +
Sbjct: 49 RFAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENLP------------LKDESFDFAL 96
Query: 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDG 213
V + + L+ ++LK GY++ ++ +N
Sbjct: 97 MVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFL-------GREYEKNKEKSVFY 149
Query: 214 TRAFYFSNDFLTSLFKENGFDVEE 237
A +FS + L L ++ GF+ +
Sbjct: 150 KNARFFSTEELMDLMRKAGFEEFK 173
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (93), Expect = 5e-04
Identities = 14/60 (23%), Positives = 21/60 (35%)
Query: 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF 427
+ +N + K VL++GCG G + A A V+ D SI
Sbjct: 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKI 89
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (92), Expect = 5e-04
Identities = 29/143 (20%), Positives = 41/143 (28%), Gaps = 3/143 (2%)
Query: 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
K VL+VGCG G V D S + + T + + D
Sbjct: 40 KIVLDVGCGTGILSMFAAKHGAKH-VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLED 98
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERL 196
I M + L + M VL L G + +I E
Sbjct: 99 VHLPFPKVDIIISEWMGYFL--LYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDS 156
Query: 197 TGKDQKISENFYVRGDGTRAFYF 219
KD+K++ V G F
Sbjct: 157 QYKDEKLNYWQDVYGFDYSPFVP 179
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.2 bits (93), Expect = 5e-04
Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 5/107 (4%)
Query: 77 KDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS 135
K VL+VG G G I + AA V + S + V K V T + +
Sbjct: 35 KVVLDVGSGTG--ILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVE 92
Query: 136 DDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182
+ I M + L ++ VL K L P G +
Sbjct: 93 EVELPVEKVDIIISEWMGYCL--FYESMLNTVLHARDKWLAPDGLIF 137
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.8 bits (92), Expect = 5e-04
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 406
+ N + K VL++G G G +C A A V+ +
Sbjct: 25 MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIE 63
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 39.3 bits (91), Expect = 6e-04
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLV--MTHKDFTETRVSTFVCDLISD 136
+L +G AG T + VYA +++PR + + + +
Sbjct: 78 ILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP--- 134
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183
Q + ++ V +++ A P + ++++N K LK GY +
Sbjct: 135 ----QEYANIVEKVDVIYEDVAQ-PNQAEILIKNAKWFLKKGGYGMI 176
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 38.9 bits (89), Expect = 8e-04
Identities = 27/218 (12%), Positives = 54/218 (24%), Gaps = 37/218 (16%)
Query: 52 HQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRA 111
HQ L + W G + VL CG + L + V + S A
Sbjct: 1 HQSEV---NKDLQQYWSSLNVVPGAR-VLVPLCGKSQDMSWL--SGQGYHVVGAELSEAA 54
Query: 112 V----------NLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSP 161
V + + DF + A+
Sbjct: 55 VERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPA 114
Query: 162 EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSN 221
+ +Q+++ ++ L I+ + F
Sbjct: 115 DMRERYVQHLEALMPQACSGLL-------------------ITLEYDQALLEGPPFSVPQ 155
Query: 222 DFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWV 259
+L + ++V ++G + + AR L +
Sbjct: 156 TWLHRVM-SGNWEVTKVG-GQDTLHSSARGLKAGLERM 191
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 38.9 bits (90), Expect = 0.001
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 79 VLEVGCGAGN-TIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD 137
+LEVG G+GN + + L A + + + M + +E V
Sbjct: 89 ILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAM--DNLSEFYDIGNVRTSR--- 143
Query: 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183
I+ D + + P +Q I ++KP F
Sbjct: 144 --SDIADFISDQMYDAVIADIPDPWNH---VQKIASMMKPGSVATF 184
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Score = 38.5 bits (89), Expect = 0.001
Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 31/185 (16%)
Query: 377 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436
V++ G G + V A V + + + LL + + + +RL
Sbjct: 89 LPDVVDATAGLGRD-AFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERL 147
Query: 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAF 496
+ + + A+ + V Y+ P+F + KS ++
Sbjct: 148 QLIHASSLTALTDITPR-------PQVVYLD----PMFPHKQ-------KSALVKKEMRV 189
Query: 497 ILCHIFRQVDEPSMLSAATQCGF-RLVDKWPSK----NSASPSESII--SSWFSENGHEV 549
+ +D +L A R+V K P + + +++ F ++
Sbjct: 190 FQSLVGPDLDADGLLEPARLLATKRVVVKRPDYAPPLANVATPNAVVTKGHRF-----DI 244
Query: 550 YLPSP 554
Y +P
Sbjct: 245 YAGTP 249
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 38.6 bits (89), Expect = 0.001
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 15/164 (9%)
Query: 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTF 129
Y G +++VG G+G + +I+ YP + D + +
Sbjct: 76 YTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVI------ENAPPLSGIEHV 129
Query: 130 VCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIG 189
D+ + + + V S EK L N K L P G V+ ++ +
Sbjct: 130 GGDMFASVPQGD-------AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182
Query: 190 DLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233
+ K +N G R + L K +GF
Sbjct: 183 EEPNTSEESKLVSTLDNLMFITVGGRE--RTEKQYEKLSKLSGF 224
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 37.6 bits (86), Expect = 0.003
Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 22/182 (12%)
Query: 77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
VL++GCG G + A Y D + ++N + R F S
Sbjct: 26 DSVLDLGCGKGGDLLKYERAGIG-EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY 84
Query: 137 DLSRQISPSSIDIVTMVFVLSAVSPE-KMSLVLQNIKKVLKPTGYV---------LFRDY 186
+ I + A S + + +NI + L+P GY + Y
Sbjct: 85 GRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERY 144
Query: 187 AIGDLAQERLTGKDQKISENFYVRG-----------DGTRAFYFSNDFLTSLFKENGFDV 235
G ++ + + +K+ + + ++ + FK G +
Sbjct: 145 KQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSL 204
Query: 236 EE 237
E
Sbjct: 205 VE 206
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 37.4 bits (85), Expect = 0.003
Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 22/210 (10%)
Query: 34 RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
+ Y+R A+ Y D Y+ + + + + Y R VL++G G + L
Sbjct: 6 WEFYDRIARAY-DSMYETPKWKLY--HRLIGSFLEEYLKNPCR--VLDLGG--GTGKWSL 58
Query: 94 IAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153
V D + + V + ++DL +
Sbjct: 59 FLQERGFEVVLVDP-------SKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGD 111
Query: 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENF---YVR 210
+ + +K I++VL P G ++ Q+ + F
Sbjct: 112 VLSYVENKDK---AFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTT 168
Query: 211 GDGTRAFYFSNDFLT--SLFKENGFDVEEL 238
GT F F++ L GF+ ++
Sbjct: 169 SVGTTLFSFNSYAFKPEDLDSLEGFETVDI 198
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 36.7 bits (84), Expect = 0.003
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
++VGCG G L A VYA D +P A++ T + + V + D
Sbjct: 37 AVDVGCGTG--GVTLELAGRVRRVYAIDRNPEAIS--TTEMNLQRHGLGDNVTLMEGDAP 92
Query: 139 SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ 193
IDI + + +L+ IK LKP G ++ + +
Sbjct: 93 EALCKIPDIDIAVVGGSGGELQE-----ILRIIKDKLKPGGRIIVTAILLETKFE 142
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 37.3 bits (85), Expect = 0.003
Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 15/170 (8%)
Query: 27 TGVSPFWRDKYEREAKKYWDLFYK--RHQDRFFK----DRHYLDKEWGRYFSGAGRKDVL 80
TG + R + +W+ D F D + + + + VL
Sbjct: 31 TGRPAYAG----RYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVL 86
Query: 81 EVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR 140
+VG G G + + P + + + A D T
Sbjct: 87 DVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDF-----F 141
Query: 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGD 190
+ P + D+V + FVL S E +L+ + L+P G +L D A +
Sbjct: 142 KPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVE 191
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 564 | |||
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.87 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.85 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.84 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.84 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.83 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.82 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.82 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.82 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.82 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.82 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.8 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.79 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.79 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.78 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.78 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.77 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.77 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.74 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.73 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.72 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.72 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.72 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.71 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.71 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.7 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.7 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.69 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.67 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.65 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.64 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.61 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.61 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.61 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.59 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.59 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.58 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.55 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.55 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.54 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.53 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.52 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.5 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.49 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.48 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.48 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.48 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.48 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.47 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.47 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.47 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.47 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.43 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.41 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.4 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.39 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.39 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.38 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.38 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.37 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.36 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.35 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.35 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.35 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.35 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.34 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.34 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.33 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.33 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.33 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.31 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.3 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.27 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.27 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.27 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.26 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.25 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.24 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.24 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.23 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.23 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.22 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.21 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.21 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.21 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.21 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.21 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.21 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.2 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.2 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.19 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.19 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.19 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.18 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.17 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.17 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.17 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.17 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.16 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.14 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.14 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.13 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.12 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.1 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.09 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.09 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.09 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.08 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.07 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.05 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.03 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.02 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.02 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.01 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.0 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.97 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.97 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.97 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.93 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.9 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.89 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.87 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.84 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.82 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.82 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.81 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.8 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.79 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.78 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.76 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.74 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.72 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.72 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.64 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.61 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.59 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.57 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.56 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.5 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.48 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.48 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.47 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.46 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.42 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.42 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.4 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.4 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.39 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.36 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.35 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.35 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.34 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.34 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.32 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.31 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.29 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.26 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.25 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.25 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.2 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.18 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.13 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.11 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.1 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.09 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.04 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.01 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.98 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.95 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.89 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.88 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.84 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.84 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.83 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.82 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.8 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.76 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.76 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.74 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.71 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.69 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.66 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.65 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.64 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.63 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.58 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.52 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.5 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.44 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.26 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.25 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.1 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.09 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.04 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.01 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.91 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.89 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.83 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.79 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.79 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.72 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.69 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.25 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.13 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.11 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.09 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.98 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.9 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 95.77 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.76 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.71 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.69 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.68 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.67 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.51 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.45 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.32 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.15 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.04 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.0 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 95.0 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.94 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.93 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.86 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.86 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.71 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.42 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.3 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 94.29 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.27 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.24 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.97 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.75 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.69 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.6 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 93.5 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.48 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.38 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.33 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.99 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 92.86 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.74 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 92.67 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.65 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.64 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.59 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.57 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.33 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.18 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.09 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.82 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.8 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 91.79 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 90.93 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 90.88 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.17 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 90.12 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 90.09 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 90.04 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 89.8 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 89.39 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.1 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.07 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 88.9 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.77 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 88.47 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 88.11 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 88.09 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 88.07 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 87.9 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 87.83 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 87.45 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 87.19 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 87.02 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 86.9 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 86.61 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 86.16 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.01 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 85.34 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 85.32 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 85.31 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 85.3 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.13 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 85.02 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 84.61 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.37 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 83.94 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 83.81 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 83.71 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 83.52 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.42 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 82.97 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 82.8 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 82.45 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 82.35 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 82.35 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 82.26 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 81.74 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 81.51 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 80.37 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 80.25 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 80.24 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 80.2 |
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.3e-22 Score=186.70 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=117.6
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeE
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
....++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|+++....+ .+++|.++|+... ++++++||+
T Consensus 56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~----~~~~~~fD~ 130 (222)
T d2ex4a1 56 PNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF----TPEPDSYDV 130 (222)
T ss_dssp --CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC----CCCSSCEEE
T ss_pred cCCCCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccccccccccccccccc----ccccccccc
Confidence 344677899999999999999887664 4589999999999999999875433 5679999998653 346889999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHH
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFK 229 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 229 (564)
|++..+++|++.++...++++++++|||||.+++.++..... ..+. .....+.++.+.+.++|+
T Consensus 131 I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~--------------~~~~--~~~~~~~~~~~~~~~l~~ 194 (222)
T d2ex4a1 131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG--------------VILD--DVDSSVCRDLDVVRRIIC 194 (222)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS--------------EEEE--TTTTEEEEBHHHHHHHHH
T ss_pred cccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccc--------------cccc--cCCceeeCCHHHHHHHHH
Confidence 999999999987778899999999999999999987543321 0111 111223458999999999
Q ss_pred hCCCcEEEeeee
Q 008457 230 ENGFDVEELGLC 241 (564)
Q Consensus 230 ~aGf~~~~~~~~ 241 (564)
++||++++....
T Consensus 195 ~aGf~ii~~~~q 206 (222)
T d2ex4a1 195 SAGLSLLAEERQ 206 (222)
T ss_dssp HTTCCEEEEEEC
T ss_pred HcCCEEEEEEEe
Confidence 999999876553
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.85 E-value=5.3e-22 Score=186.63 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=123.2
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-CCCeeEEEecCCcccccCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
++.+.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++.... ..+++|.++|+... |+++
T Consensus 6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l----~~~~ 79 (231)
T d1vl5a_ 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM----PFTD 79 (231)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC----CSCT
T ss_pred HHHHhcCCCCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccccccccccccccccc----cccc
Confidence 3445566688999999999999999999988 578999999999999999876533 36799999998653 5688
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchh-hhhhcccccccccceeecCCCceeeccCHHH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLA-QERLTGKDQKISENFYVRGDGTRAFYFSNDF 223 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (564)
++||+|+|..++||++ ++..++++++++|||||++++.++...... ...+...... .....+...++.++
T Consensus 80 ~~fD~v~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 150 (231)
T d1vl5a_ 80 ERFHIVTCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEK-------ERDYSHHRAWKKSD 150 (231)
T ss_dssp TCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHH-------HHCTTCCCCCBHHH
T ss_pred cccccccccccccccC--CHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHh-------hcccCcccCCCHHH
Confidence 9999999999999995 788999999999999999999876543321 1111111100 01122334568999
Q ss_pred HHHHHHhCCCcEEEeeee
Q 008457 224 LTSLFKENGFDVEELGLC 241 (564)
Q Consensus 224 l~~~l~~aGf~~~~~~~~ 241 (564)
+.++|+++||+++++...
T Consensus 151 ~~~~l~~aGf~~~~~~~~ 168 (231)
T d1vl5a_ 151 WLKMLEEAGFELEELHCF 168 (231)
T ss_dssp HHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEEe
Confidence 999999999988765443
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.84 E-value=2.3e-21 Score=182.48 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=123.6
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
+.+.+..+++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+ .++.++++|+... +++++
T Consensus 8 l~~~~~~~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~----~~~~~ 81 (234)
T d1xxla_ 8 MIKTAECRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL----PFPDD 81 (234)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC----CSCTT
T ss_pred HHHHhCCCCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccccccccccccccccc----ccccc
Confidence 445666789999999999999999999988 5689999999999999998875443 5799999998643 57899
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhh-hhhcccccccccceeecCCCceeeccCHHHH
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ-ERLTGKDQKISENFYVRGDGTRAFYFSNDFL 224 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (564)
+||+|+|..+++|++ ++..++++++++|||||++++.++....... ..+..... ......+...++..++
T Consensus 82 ~fD~v~~~~~l~~~~--d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 152 (234)
T d1xxla_ 82 SFDIITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLN-------RLRDPSHVRESSLSEW 152 (234)
T ss_dssp CEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHH-------HHHCTTCCCCCBHHHH
T ss_pred ccceeeeeceeeccc--CHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHH-------hhCCCcccccCCHHHH
Confidence 999999999999995 7889999999999999999998766543221 11111110 0112233345688999
Q ss_pred HHHHHhCCCcEEEeee
Q 008457 225 TSLFKENGFDVEELGL 240 (564)
Q Consensus 225 ~~~l~~aGf~~~~~~~ 240 (564)
..+++++||.+..+..
T Consensus 153 ~~~~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 153 QAMFSANQLAYQDIQK 168 (234)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHCCCceeEEEE
Confidence 9999999998876544
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=3.6e-20 Score=170.95 Aligned_cols=173 Identities=17% Similarity=0.239 Sum_probs=122.7
Q ss_pred HHHHHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHH
Q 008457 35 DKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL 114 (564)
Q Consensus 35 ~~y~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~ 114 (564)
+.|+..|+.| |.++..+...+.... ..+.. + .++.+|||||||+|.++..+. +++|+|+|+.|++.
T Consensus 4 ~~f~~~a~~Y-d~w~~~~~~~~~~~~----~~~~~-~--~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~ 69 (208)
T d1vlma_ 4 HIFERFVNEY-ERWFLVHRFAYLSEL----QAVKC-L--LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEI 69 (208)
T ss_dssp HHHHHTHHHH-HHHHHHTHHHHHHHH----HHHHH-H--CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHH----HHHHh-h--CCCCeEEEECCCCcccccccc------eEEEEeCChhhccc
Confidence 4677777776 554444322211111 11111 1 456789999999999987763 36899999999999
Q ss_pred HHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh
Q 008457 115 VMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE 194 (564)
Q Consensus 115 a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~ 194 (564)
|+++ ++.+.++|+.+. ++++++||+|++..+|+|++ ++..++++++++|+|||.+++.++........
T Consensus 70 a~~~------~~~~~~~d~~~l----~~~~~~fD~I~~~~~l~h~~--d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 137 (208)
T d1vlma_ 70 ARKR------GVFVLKGTAENL----PLKDESFDFALMVTTICFVD--DPERALKEAYRILKKGGYLIVGIVDRESFLGR 137 (208)
T ss_dssp HHHT------TCEEEECBTTBC----CSCTTCEEEEEEESCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHH
T ss_pred cccc------cccccccccccc----cccccccccccccccccccc--ccccchhhhhhcCCCCceEEEEecCCcchhHH
Confidence 9875 478999998643 56789999999999999995 68899999999999999999998877654322
Q ss_pred hhcccccccccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 195 RLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
....... . .....+..+++.+++.++|+++||+.+++..
T Consensus 138 ~~~~~~~--~-----~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 138 EYEKNKE--K-----SVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHTTT--C------CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhhccc--c-----ccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 2111110 0 0011233467999999999999998876543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.83 E-value=2.1e-20 Score=177.27 Aligned_cols=156 Identities=13% Similarity=0.213 Sum_probs=120.6
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
..+.+.+...+..+|||+|||+|+++..|+..+ ..+|+++|+|+.|++.|+++... ..+++|.++|+... ++++
T Consensus 83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~-~~~~~~~~~d~~~~----~~~~ 156 (254)
T d1xtpa_ 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG-MPVGKFILASMETA----TLPP 156 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT-SSEEEEEESCGGGC----CCCS
T ss_pred HHHHhhCCCCCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhccccc-cccceeEEcccccc----ccCC
Confidence 344455566788999999999999999887664 34899999999999999988653 34578999998653 3467
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHH
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFL 224 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (564)
++||+|++.++++|+++++...+|++++++|||||.+++.+....... ..+. ......+.+.+.+
T Consensus 157 ~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~-------------~~~d--~~d~~~~rs~~~~ 221 (254)
T d1xtpa_ 157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR-------------FLVD--KEDSSLTRSDIHY 221 (254)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC-------------EEEE--TTTTEEEBCHHHH
T ss_pred CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCc-------------ceec--ccCCceeCCHHHH
Confidence 899999999999999977888999999999999999999875432210 0111 1112224589999
Q ss_pred HHHHHhCCCcEEEeeee
Q 008457 225 TSLFKENGFDVEELGLC 241 (564)
Q Consensus 225 ~~~l~~aGf~~~~~~~~ 241 (564)
.++|+++||++++....
T Consensus 222 ~~l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 222 KRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp HHHHHHHTCCEEEEEEC
T ss_pred HHHHHHcCCEEEEEEee
Confidence 99999999999876543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=5.8e-20 Score=174.77 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=94.1
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
...+..+|||||||+|..+..|++. +.+|+|+|+|+.|++.|+++....+.++++.++|+.+.. ++ ++||+|+
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~----~~-~~fD~I~ 110 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA----FK-NEFDAVT 110 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC----CC-SCEEEEE
T ss_pred cCCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhcc----cc-cccchHh
Confidence 3367789999999999999999997 679999999999999999988766678999999986542 33 6899999
Q ss_pred Ec-ccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 152 MV-FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 152 ~~-~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
|. .+++|++.+++..+|++++++|||||++++...+
T Consensus 111 ~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 111 MFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp ECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 96 5888988788999999999999999999986543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.82 E-value=1.2e-20 Score=182.68 Aligned_cols=155 Identities=17% Similarity=0.088 Sum_probs=118.4
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.....++.+|||||||+|.++..|++++ +++|+|+|+|+.|++.|+++.... ..++++.++|+... |+++++|
T Consensus 62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l----~~~~~sf 136 (282)
T d2o57a1 62 TGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI----PCEDNSY 136 (282)
T ss_dssp TTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC----SSCTTCE
T ss_pred hcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccc----ccccccc
Confidence 3445789999999999999999999875 679999999999999999886543 35799999998653 6688999
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHH
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL 227 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (564)
|+|++..+++|++ ++..++++++++|||||++++.++...+....... ..+.... ......+.+++.++
T Consensus 137 D~V~~~~~l~h~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~s~~~~~~~ 205 (282)
T d2o57a1 137 DFIWSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI---QPILDRI------KLHDMGSLGLYRSL 205 (282)
T ss_dssp EEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG---HHHHHHH------TCSSCCCHHHHHHH
T ss_pred chhhccchhhhcc--CHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHH---HHHHHHh------ccCCCCCHHHHHHH
Confidence 9999999999995 67899999999999999999987654332111100 0000000 01123478999999
Q ss_pred HHhCCCcEEEeee
Q 008457 228 FKENGFDVEELGL 240 (564)
Q Consensus 228 l~~aGf~~~~~~~ 240 (564)
++++||..+....
T Consensus 206 l~~~Gf~~i~~~d 218 (282)
T d2o57a1 206 AKECGLVTLRTFS 218 (282)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHcCCceEEEEE
Confidence 9999998776543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.5e-20 Score=177.02 Aligned_cols=187 Identities=13% Similarity=0.134 Sum_probs=131.9
Q ss_pred HhHhHHHHHHhhccccccc--cchhHHHHhhhccC--CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHH
Q 008457 41 AKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSG--AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVM 116 (564)
Q Consensus 41 a~~ywd~~~~~~~~~~~~~--~~~~~~~~~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~ 116 (564)
...||+.||......+... .+++...+.+.+.. .++.+|||||||+|.++..++..+ ..+|+|+|+|+.|++.|+
T Consensus 13 ~~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~ 91 (257)
T d2a14a1 13 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELE 91 (257)
T ss_dssp HHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHH
T ss_pred hHHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHH
Confidence 4689999987654443322 33455555555443 567899999999999987776653 347999999999999999
Q ss_pred hcccccCCCe-------------------------------eEEEecCCcccccCCCCCCceeEEEEcccccCCC--hhH
Q 008457 117 THKDFTETRV-------------------------------STFVCDLISDDLSRQISPSSIDIVTMVFVLSAVS--PEK 163 (564)
Q Consensus 117 ~~~~~~~~~i-------------------------------~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~--~~~ 163 (564)
++........ .....++.......+++.++||+|++..++||++ .++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~ 171 (257)
T d2a14a1 92 KWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDA 171 (257)
T ss_dssp HHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHH
T ss_pred HHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHH
Confidence 8754322111 1222333333334467889999999999999986 367
Q ss_pred HHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCC-ceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 164 MSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDG-TRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 164 ~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
+..+++++.++|||||.+++.++..... +..... .+.++++.++++++|+++||+++++....
T Consensus 172 ~~~~l~~i~~~LkpGG~li~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~ 235 (257)
T d2a14a1 172 YRAALCNLASLLKPGGHLVTTVTLRLPS----------------YMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSP 235 (257)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEESSCCE----------------EEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHHhccCCCcEEEEEEeccccc----------------ceeccccccccCCCHHHHHHHHHHCCCEEEEEEEec
Confidence 8899999999999999999987654321 111122 22346799999999999999998876554
Q ss_pred cc
Q 008457 243 KQ 244 (564)
Q Consensus 243 ~~ 244 (564)
..
T Consensus 236 ~~ 237 (257)
T d2a14a1 236 QS 237 (257)
T ss_dssp CC
T ss_pred cc
Confidence 33
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=6.1e-20 Score=175.36 Aligned_cols=196 Identities=15% Similarity=0.201 Sum_probs=138.0
Q ss_pred HHHHHHH-HHhHhHHHHHHhhccccccccc---hhHHHHhhhcc--CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEe
Q 008457 33 WRDKYER-EAKKYWDLFYKRHQDRFFKDRH---YLDKEWGRYFS--GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACD 106 (564)
Q Consensus 33 ~~~~y~~-~a~~ywd~~~~~~~~~~~~~~~---~~~~~~~~~l~--~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD 106 (564)
..+.|+. .+..||+.||......+..... +....+.+.+. ...+.+|||||||+|.++...+... ..+|+|+|
T Consensus 6 ~~~~~~~f~~~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D 84 (263)
T d2g72a1 6 VASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTD 84 (263)
T ss_dssp HHHHGGGCCHHHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEEC
T ss_pred HHHHHhhcCHHHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEe
Confidence 4566777 6788999999877666655543 33455555553 3578999999999998875544443 45899999
Q ss_pred CChHHHHHHHhcccccCCC-------------------------------eeEEEecCCccccc--CCCCCCceeEEEEc
Q 008457 107 FSPRAVNLVMTHKDFTETR-------------------------------VSTFVCDLISDDLS--RQISPSSIDIVTMV 153 (564)
Q Consensus 107 ~s~~~l~~a~~~~~~~~~~-------------------------------i~~~~~d~~~~~~~--~~~~~~~fD~V~~~ 153 (564)
+|+.|++.++++....... .....+|+...... .+.+.++||+|++.
T Consensus 85 ~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~ 164 (263)
T d2g72a1 85 FLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSA 164 (263)
T ss_dssp SCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeH
Confidence 9999999998765432211 12344566544321 13446789999999
Q ss_pred ccccCCC--hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCc-eeeccCHHHHHHHHHh
Q 008457 154 FVLSAVS--PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGT-RAFYFSNDFLTSLFKE 230 (564)
Q Consensus 154 ~vl~~~~--~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 230 (564)
+++||++ .+++..++++++++|||||.|++....... ++...... ..++++.++++++|++
T Consensus 165 ~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~----------------~~~~~~~~~~~~~~t~e~v~~~l~~ 228 (263)
T d2g72a1 165 FCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES----------------WYLAGEARLTVVPVSEEEVREALVR 228 (263)
T ss_dssp SCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC----------------EEEETTEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCc----------------ccccCCcccccCCCCHHHHHHHHHH
Confidence 9999986 357899999999999999999997654321 22222222 2346799999999999
Q ss_pred CCCcEEEeeeeeccc
Q 008457 231 NGFDVEELGLCCKQV 245 (564)
Q Consensus 231 aGf~~~~~~~~~~~~ 245 (564)
+||+++.......+.
T Consensus 229 aGf~v~~~~~~~~~~ 243 (263)
T d2g72a1 229 SGYKVRDLRTYIMPA 243 (263)
T ss_dssp TTEEEEEEEEEECCG
T ss_pred CCCeEEEEEEeeccC
Confidence 999998776654443
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.82 E-value=9.1e-20 Score=170.29 Aligned_cols=162 Identities=19% Similarity=0.243 Sum_probs=117.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHh--CCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
+++.+|||||||+|..+..|++. .|+.+|+|+|+|+.|++.|+++..... .++.+...|+. +++...+|+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~------~~~~~~~d~ 111 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR------HVEIKNASM 111 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTT------TCCCCSEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhh------cccccccee
Confidence 67889999999999999999986 478999999999999999998765433 34555555553 335678999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhh-h-hcccccc--cccceeecCC--------Cceee
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQE-R-LTGKDQK--ISENFYVRGD--------GTRAF 217 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~-~-~~~~~~~--~~~~~~~~~~--------~~~~~ 217 (564)
|++..++||++.+++..+|++++++|||||.+++.++........ . ....... ....+ .... .....
T Consensus 112 i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 190 (225)
T d1im8a_ 112 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGY-SELEVSQKRTALENVMR 190 (225)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTG-GGSTTHHHHHHHHHHCC
T ss_pred eEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCC-CHHHHHHHHHHhhcccC
Confidence 999999999998899999999999999999999988765432211 0 0000000 00000 0000 00112
Q ss_pred ccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 218 YFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 218 ~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
.++.+++.++|+++||+.+++....
T Consensus 191 ~~s~~~~~~~L~~aGF~~v~~~~~~ 215 (225)
T d1im8a_ 191 TDSIETHKVRLKNVGFSQVELWFQC 215 (225)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEEEEE
T ss_pred CCCHHHHHHHHHHcCCCceEEeeee
Confidence 4689999999999999988776543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.5e-18 Score=162.23 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=121.6
Q ss_pred chhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc------------------c
Q 008457 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF------------------T 122 (564)
Q Consensus 61 ~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~------------------~ 122 (564)
..+.+.+.+++...++.+|||+|||+|..+..|++. |.+|+|+|+|+.+++.|+++... .
T Consensus 31 ~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (229)
T d2bzga1 31 QLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS 108 (229)
T ss_dssp HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence 345555566677788999999999999999999998 88999999999999999875431 2
Q ss_pred CCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccc
Q 008457 123 ETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQK 202 (564)
Q Consensus 123 ~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~ 202 (564)
..++++.++|+.... +...+.||+|+...+++|+++++...+++++.++|||||.+++..+......
T Consensus 109 ~~~v~~~~~d~~~l~---~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~---------- 175 (229)
T d2bzga1 109 SGNISLYCCSIFDLP---RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTK---------- 175 (229)
T ss_dssp TSSEEEEESCGGGGG---GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTT----------
T ss_pred CCcEEEEEcchhhcc---ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCC----------
Confidence 357889999986543 3467899999999999999999999999999999999999988766543210
Q ss_pred cccceeecCCCceeeccCHHHHHHHHHhCCCcEEEeee
Q 008457 203 ISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
....++.++.+++..+|.. +|.+..+..
T Consensus 176 ---------~~gpp~~~~~~el~~lf~~-~~~i~~le~ 203 (229)
T d2bzga1 176 ---------HPGPPFYVPHAEIERLFGK-ICNIRCLEK 203 (229)
T ss_dssp ---------CCCSSCCCCHHHHHHHHTT-TEEEEEEEE
T ss_pred ---------CCCCCCCCCHHHHHHHhcC-CCEEEEEEE
Confidence 1112345689999999965 687755543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.79 E-value=5.4e-19 Score=167.37 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=91.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||+|.++..|++. +.+|+|+|+|+.|++.|+++....+.+++++++|+.... .+++||+|+|.
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~i~~~ 108 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-----INRKFDLITCC 108 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-----CSCCEEEEEEC
T ss_pred CCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccCccceeeccchhhhc-----cccccccccee
Confidence 45689999999999999999998 678999999999999999987766678999999996542 24689999985
Q ss_pred -ccccCC-ChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 154 -FVLSAV-SPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 154 -~vl~~~-~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.+++|+ +.+++..+|+++++.|||||.+++....
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 109 LDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred eeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 577777 4678999999999999999999986543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.79 E-value=1.4e-18 Score=158.60 Aligned_cols=139 Identities=20% Similarity=0.251 Sum_probs=107.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||||||+|.++..|+++ +.+|+|+|+|+.|++.|+++....+ .++.+...|+.... ++++||+|++
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~fD~I~~ 101 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT-----FDGEYDFILS 101 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC-----CCCCEEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc-----ccccccEEEE
Confidence 45569999999999999999998 7899999999999999988765433 56888888886532 4678999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
..+++|+++.+...++++++++|+|||++++.++........ .....+.++..++.+.+ +|
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~el~~~~--~~ 162 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPC-----------------TVGFPFAFKEGELRRYY--EG 162 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC--------------------------CCCCBCTTHHHHHT--TT
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCC-----------------CCCCCCccCHHHHHHHh--CC
Confidence 999999998889999999999999999999976653221100 01112335667777777 57
Q ss_pred CcEEEe
Q 008457 233 FDVEEL 238 (564)
Q Consensus 233 f~~~~~ 238 (564)
|+++..
T Consensus 163 ~~i~~~ 168 (198)
T d2i6ga1 163 WDMLKY 168 (198)
T ss_dssp SEEEEE
T ss_pred CeEEEe
Confidence 887653
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.78 E-value=3.3e-19 Score=166.36 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=113.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||+|.++..|++. +.+|+|+|+|+.+++.|+++.. .++.+..+++.... ++++||+|++.
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~~~-----~~~~fD~I~~~ 88 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK---DGITYIHSRFEDAQ-----LPRRYDNIVLT 88 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC---SCEEEEESCGGGCC-----CSSCEEEEEEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc---cccccccccccccc-----ccccccccccc
Confidence 45778999999999999999887 5789999999999999998754 46889888875432 35799999999
Q ss_pred ccccCCChhHHHHHHHHHH-hccCCCeEEEEEecCCCchhhhhh-c-ccccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 154 FVLSAVSPEKMSLVLQNIK-KVLKPTGYVLFRDYAIGDLAQERL-T-GKDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~-r~LkpgG~lii~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
.+|+|++ ++..+|++++ ++|||||.+++..++......... . .................+...++.+++.+++++
T Consensus 89 ~vleh~~--d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~ 166 (225)
T d2p7ia1 89 HVLEHID--DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 166 (225)
T ss_dssp SCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred ceeEecC--CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHH
Confidence 9999994 7889999998 899999999999877654322110 0 000000000000001123346799999999999
Q ss_pred CCCcEEEee
Q 008457 231 NGFDVEELG 239 (564)
Q Consensus 231 aGf~~~~~~ 239 (564)
+||+++...
T Consensus 167 ~Gf~i~~~~ 175 (225)
T d2p7ia1 167 AGLQVTYRS 175 (225)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 999987643
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=4.9e-19 Score=167.55 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=120.0
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~ 142 (564)
..+.+.+...++.+|||||||+|..+..+++.+ +++|+|+|+|+.|++.|+++....+ .+++|+++|+... +
T Consensus 23 ~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-----~ 96 (245)
T d1nkva_ 23 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-----V 96 (245)
T ss_dssp HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-----C
T ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-----c
Confidence 445566667899999999999999999998875 5899999999999999998765443 5699999998653 2
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhh-hhhcccccccccceeecCCCceeeccCH
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQ-ERLTGKDQKISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (564)
++++||+|+|..+++|++ ++..++++++++|||||++++.++....... ....... .......+.+.
T Consensus 97 ~~~~fD~v~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 164 (245)
T d1nkva_ 97 ANEKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQAC----------GVSSTSDFLTL 164 (245)
T ss_dssp CSSCEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTT----------TCSCGGGSCCH
T ss_pred ccCceeEEEEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHh----------ccCCCcccCCH
Confidence 678999999999999995 6789999999999999999998754322110 0000000 01111124578
Q ss_pred HHHHHHHHhCCCcEEEeee
Q 008457 222 DFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~~~~ 240 (564)
..+...++++||.++....
T Consensus 165 ~~~~~~~~~aG~~~v~~~~ 183 (245)
T d1nkva_ 165 PGLVGAFDDLGYDVVEMVL 183 (245)
T ss_dssp HHHHHHHHTTTBCCCEEEE
T ss_pred HHHHHHHHHcCCEEEEEEe
Confidence 8999999999998876543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.77 E-value=3.4e-19 Score=166.44 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=96.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
++..+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++......++.+++.|+... ++++++||+|+|.
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l----~~~~~~fD~I~~~ 109 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL----SFEDKTFDYVIFI 109 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC----CSCTTCEEEEEEE
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccc----cccCcCceEEEEe
Confidence 56789999999999999999987 78999999999999999988765566788888888653 5688999999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.+++|++..++..+|+++.++|||||.+++..++
T Consensus 110 ~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 110 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9999998788999999999999999999987654
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.77 E-value=1.7e-18 Score=164.24 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=123.4
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCC
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~ 141 (564)
...+.+.+...+..+|||||||+|.++..+++++|+.+++++|+ +.+++.++++.... ..+++++.+|+...
T Consensus 69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~----- 142 (253)
T d1tw3a2 69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP----- 142 (253)
T ss_dssp THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-----
T ss_pred HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-----
Confidence 34455555556778999999999999999999999999999998 67899998876543 36799999998542
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCH
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (564)
...+||+|++.++|||+++++...+|++++++|||||.|++.+............ ...+.-.++....+ ...+.
T Consensus 143 -~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~--~~~~dl~~~~~~~g---~~rt~ 216 (253)
T d1tw3a2 143 -LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQ--FTELDLRMLVFLGG---ALRTR 216 (253)
T ss_dssp -CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHH--HHHHHHHHHHHHSC---CCCBH
T ss_pred -cccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhH--HHHhhHHHHhhCCC---cCCCH
Confidence 2257999999999999998888899999999999999999988654322110000 00000000000011 12479
Q ss_pred HHHHHHHHhCCCcEEEeeeeecc
Q 008457 222 DFLTSLFKENGFDVEELGLCCKQ 244 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~~~~~~~~ 244 (564)
++|.++|+++||+++++.....+
T Consensus 217 ~e~~~ll~~AGf~~~~v~~~~~p 239 (253)
T d1tw3a2 217 EKWDGLAASAGLVVEEVRQLPSP 239 (253)
T ss_dssp HHHHHHHHHTTEEEEEEEEEECS
T ss_pred HHHHHHHHHCCCeEEEEEECCCC
Confidence 99999999999999887655433
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.74 E-value=1.1e-17 Score=158.67 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=114.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||||||+|..+..+++.. ..+|+|+|+|+.|++.|+++.... ..++.+.++|+....+ ..+++||+|+
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~---~~~~~fD~V~ 98 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM---DLGKEFDVIS 98 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC---CCSSCEEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcc---cccccceEEE
Confidence 578999999999999999998873 358999999999999999876433 3478899999865432 1467899999
Q ss_pred EcccccCC--ChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhc-cccccc--------------ccce--eecCC
Q 008457 152 MVFVLSAV--SPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT-GKDQKI--------------SENF--YVRGD 212 (564)
Q Consensus 152 ~~~vl~~~--~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~-~~~~~~--------------~~~~--~~~~~ 212 (564)
|.+++||+ +.+++..+++++.++|||||++++..+........... ...... .... +...+
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 178 (252)
T d1ri5a_ 99 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLD 178 (252)
T ss_dssp EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETT
T ss_pred EcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhcccCCceEEEecccccCCcCcCceEEEEEccc
Confidence 99999997 45678899999999999999999976543211110000 000000 0000 00011
Q ss_pred ---CceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 213 ---GTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 213 ---~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
....+..+.+.+.++++++||+.+...
T Consensus 179 ~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~ 208 (252)
T d1ri5a_ 179 SVNNCIEYFVDFTRMVDGFKRLGLSLVERK 208 (252)
T ss_dssp SCSSEEEECCCHHHHHHHHHTTTEEEEEEE
T ss_pred ccccCcccccCHHHHHHHHHHcCCEEEEEe
Confidence 122345678999999999999887653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.73 E-value=6.3e-18 Score=154.41 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=110.8
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-------------CCCeeEEEecCCccc
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-------------ETRVSTFVCDLISDD 137 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-------------~~~i~~~~~d~~~~~ 137 (564)
+...++.+|||+|||+|+++..|+++ |.+|+|+|+|+.|++.|+++.+.. ...+.+.++|+....
T Consensus 16 l~~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 16 LNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 45589999999999999999999998 899999999999999999875432 244577888875432
Q ss_pred ccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceee
Q 008457 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAF 217 (564)
Q Consensus 138 ~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (564)
+.....||+|++..+++|+++++...++++++++|||||.+++......... .....+
T Consensus 94 ---~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~-------------------~~~p~~ 151 (201)
T d1pjza_ 94 ---ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL-------------------LEGPPF 151 (201)
T ss_dssp ---HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS-------------------SSSCCC
T ss_pred ---cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccccc-------------------CCCccc
Confidence 1245689999999999999988899999999999999999988765442210 111223
Q ss_pred ccCHHHHHHHHHhCCCcEEEee
Q 008457 218 YFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 218 ~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
..+.+++++++. .+|++..+.
T Consensus 152 ~~~~~el~~l~~-~~~~i~~~~ 172 (201)
T d1pjza_ 152 SVPQTWLHRVMS-GNWEVTKVG 172 (201)
T ss_dssp CCCHHHHHHTSC-SSEEEEEEE
T ss_pred cCCHHHHHHHhC-CCcEEEEEE
Confidence 457888888774 577765443
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=1.1e-17 Score=159.96 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=117.3
Q ss_pred HhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCC
Q 008457 67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 67 ~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~ 144 (564)
+.+.+...++.+|||||||+|.++..+++.+ +++|+|+|+|+++++.|+++....+ ..+.+...|... .+
T Consensus 44 ~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-------~~ 115 (280)
T d2fk8a1 44 NLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-------FA 115 (280)
T ss_dssp HHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-------CC
T ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-------hc
Confidence 3445556899999999999999999988775 6899999999999999998876544 445565555532 35
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhc---------ccccccccceeecCCCce
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLT---------GKDQKISENFYVRGDGTR 215 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 215 (564)
++||.|++..+++|++..+...++++++++|||||.+++.+....+....... .....+....+ ..+
T Consensus 116 ~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyif--Pgg-- 191 (280)
T d2fk8a1 116 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIF--PGG-- 191 (280)
T ss_dssp CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTS--TTC--
T ss_pred cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhcc--CCC--
Confidence 78999999999999998888999999999999999999976544332111100 00011111111 111
Q ss_pred eeccCHHHHHHHHHhCCCcEEEeee
Q 008457 216 AFYFSNDFLTSLFKENGFDVEELGL 240 (564)
Q Consensus 216 ~~~~~~~~l~~~l~~aGf~~~~~~~ 240 (564)
...+.+++.+.++++||+++.+..
T Consensus 192 -~lPS~~~l~~~~e~aGf~v~~~~~ 215 (280)
T d2fk8a1 192 -RLPSTEMMVEHGEKAGFTVPEPLS 215 (280)
T ss_dssp -CCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred -cccchHhhhhhHHhhccccceeee
Confidence 123789999999999999987654
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.72 E-value=1.8e-17 Score=157.09 Aligned_cols=166 Identities=17% Similarity=0.188 Sum_probs=119.6
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCC
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~ 141 (564)
...+.+.+...+..+|||||||+|.++..+++++|+.+++++|+ +++++.|+++.... ..++.+..+|+.. +
T Consensus 70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-----~ 143 (256)
T d1qzza2 70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-----P 143 (256)
T ss_dssp THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-----C
T ss_pred HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-----c
Confidence 34455555546778999999999999999999999999999998 88899988876433 3678888888753 2
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCch-hhhhhcccccccccceeecCCCceeeccC
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDL-AQERLTGKDQKISENFYVRGDGTRAFYFS 220 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (564)
.+ .+||+|++.++||++++++...+|+++++.|||||+++|.+...... ...........+ .+.....+ ...|
T Consensus 144 ~p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~--~ml~~~~g---~~rt 217 (256)
T d1qzza2 144 LP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDL--RMLTFMGG---RVRT 217 (256)
T ss_dssp CS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHH--HHHHHHSC---CCCC
T ss_pred cc-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHH--HHHhhCCC---ccCC
Confidence 23 46999999999999998888899999999999999999988643211 111000000000 00000011 1248
Q ss_pred HHHHHHHHHhCCCcEEEeeee
Q 008457 221 NDFLTSLFKENGFDVEELGLC 241 (564)
Q Consensus 221 ~~~l~~~l~~aGf~~~~~~~~ 241 (564)
.++|+++|+++||++++....
T Consensus 218 ~~e~~~ll~~AGf~~~~~~~~ 238 (256)
T d1qzza2 218 RDEVVDLAGSAGLALASERTS 238 (256)
T ss_dssp HHHHHHHHHTTTEEEEEEEEE
T ss_pred HHHHHHHHHHCCCceeEEEEe
Confidence 999999999999999876543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.72 E-value=2.6e-18 Score=165.48 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=94.9
Q ss_pred cCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 72 SGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
...++.+|||||||+|.++..|++..| +.+|+|+|+|+.+++.|+++....+.+++|.+.|+... ++ +++||+|
T Consensus 24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~----~~-~~~fD~v 98 (281)
T d2gh1a1 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI----EL-NDKYDIA 98 (281)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC----CC-SSCEEEE
T ss_pred ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc----cc-cCCceEE
Confidence 346789999999999999999988765 57999999999999999998876667899999998643 33 3579999
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+|..+++|++ ++..+|++++++|||||.+++.++.
T Consensus 99 ~~~~~l~~~~--d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 99 ICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp EEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEehhhhcCC--CHHHHHHHHHHHcCcCcEEEEEECC
Confidence 9999999995 7889999999999999999998754
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=3e-17 Score=157.26 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=120.4
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+.+.+...++.+|||||||.|.++..+++.+ +++|+|+++|+++++.|+++.... ..++.+...|.. .+
T Consensus 52 ~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~-------~~ 123 (291)
T d1kpia_ 52 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE-------EF 123 (291)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG-------GC
T ss_pred HHHHhcCCCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc-------cc
Confidence 34455667899999999999999999998876 689999999999999998876543 356677776652 35
Q ss_pred CCceeEEEEcccccCCCh-------hHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcc---------cccccccce
Q 008457 144 PSSIDIVTMVFVLSAVSP-------EKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG---------KDQKISENF 207 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~-------~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~---------~~~~~~~~~ 207 (564)
+++||.|++..+++|+++ +....++++++++|||||++++.++...+.....-.. ....+...+
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyi 203 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEI 203 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHh
Confidence 789999999999999963 4578999999999999999999887654432111000 000111111
Q ss_pred eecCCCceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 208 YVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 208 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
++ .+ ...+..++..+++++||+++......
T Consensus 204 Fp--gg---~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 204 FP--GG---RLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp CT--TC---CCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred cC--CC---CCCCHHHHHhhhcccccccceeeecc
Confidence 11 11 13378999999999999998775543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=1.4e-17 Score=157.39 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=86.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..|++. +.+|+|+|+|+.|++.|+++.. ..++.+|+.+. ++++++||+|+|.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~-----~~~~~~~~~~l----~~~~~~fD~ii~~ 109 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV-----KNVVEAKAEDL----PFPSGAFEAVLAL 109 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC-----SCEEECCTTSC----CSCTTCEEEEEEC
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccc-----ccccccccccc----ccccccccceeee
Confidence 56789999999999999999887 7899999999999999998743 23566777543 5688999999985
Q ss_pred -ccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 154 -FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 154 -~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.++||++ ++..+|+++.++|||||.+++..++
T Consensus 110 ~~~~~~~~--d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 110 GDVLSYVE--NKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp SSHHHHCS--CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cchhhhhh--hHHHHHHHHHhhcCcCcEEEEEECC
Confidence 5899995 6788999999999999999998754
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.3e-17 Score=156.04 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=109.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHh----CCC--cEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCccc----ccCC
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA----YPD--VFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDD----LSRQ 141 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~----~~~--~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~----~~~~ 141 (564)
.+..+|||||||+|.++..+++. +++ .+++|+|+|+.|++.|+++.... ..++.+...+...+. ...+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 45568999999999998877654 333 46899999999999999876432 234444333322211 1235
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCH
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSN 221 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (564)
.++++||+|++.+++||++ ++..+|++++++|+|||.+++..+.........+....... ..+.+..+++.
T Consensus 119 ~~~~~fD~I~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~ 189 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRF-------PQDDLCQYITS 189 (280)
T ss_dssp SSCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGS-------CCCTTSCCCCH
T ss_pred CCCCceeEEEEccceecCC--CHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhc-------CCCcccccCCH
Confidence 6789999999999999995 78899999999999999999988766543322221111111 12233345789
Q ss_pred HHHHHHHHhCCCcEEEe
Q 008457 222 DFLTSLFKENGFDVEEL 238 (564)
Q Consensus 222 ~~l~~~l~~aGf~~~~~ 238 (564)
+++.++|++.||..+..
T Consensus 190 ~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 190 DDLTQMLDNLGLKYECY 206 (280)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999986543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=6.9e-17 Score=154.22 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=121.9
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~ 142 (564)
..+.+.+...++.+|||||||.|.++..+++.+ +++|+|+++|+..++.|+++.... ..++++...|...
T Consensus 52 ~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~------- 123 (285)
T d1kpga_ 52 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ------- 123 (285)
T ss_dssp HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-------
T ss_pred HHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-------
Confidence 344455667999999999999999999999887 799999999999999999876443 3678888888743
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhh---------hcccccccccceeecCCC
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQER---------LTGKDQKISENFYVRGDG 213 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 213 (564)
.+++||.|++..+++|+.......++++++++|||||.+++.++......... .......+....++ .+
T Consensus 124 ~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFp--gg 201 (285)
T d1kpga_ 124 FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFP--GG 201 (285)
T ss_dssp CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTST--TC
T ss_pred ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhcc--CC
Confidence 24689999999999999867778999999999999999999776532211110 00000111111111 12
Q ss_pred ceeeccCHHHHHHHHHhCCCcEEEeeeee
Q 008457 214 TRAFYFSNDFLTSLFKENGFDVEELGLCC 242 (564)
Q Consensus 214 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 242 (564)
. ..+.+++..+++++||+++++....
T Consensus 202 ~---lPsl~~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 202 R---LPSIPMVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp C---CCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred C---CCChhhHHHHHHHhchhhcccccch
Confidence 1 2378899999999999998775543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=5.4e-17 Score=157.39 Aligned_cols=146 Identities=18% Similarity=0.301 Sum_probs=102.2
Q ss_pred HHH-HHHHhHhHHHHHHhhccccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHH
Q 008457 35 DKY-EREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVN 113 (564)
Q Consensus 35 ~~y-~~~a~~ywd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~ 113 (564)
+.| +..+.++|+.+........ ......+.+.+...++.+|||+|||+|.++..|++. +.+|+|+|+|+.|++
T Consensus 19 d~Y~d~~~~~~~~~~~~~~~~r~----~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~ 92 (292)
T d1xvaa_ 19 DQYADGEAARVWQLYIGDTRSRT----AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLK 92 (292)
T ss_dssp CTTTTSHHHHHHHHHHHTTCCBC----HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHH
T ss_pred hhhhcchHHHHHHHHhcchhhhH----HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHH
Confidence 344 3467788988776543221 111222334455567889999999999999999998 789999999999999
Q ss_pred HHHhcccccCC-----CeeEEEecCCcccccCCCCCCceeEEEEc-ccccCCCh-----hHHHHHHHHHHhccCCCeEEE
Q 008457 114 LVMTHKDFTET-----RVSTFVCDLISDDLSRQISPSSIDIVTMV-FVLSAVSP-----EKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 114 ~a~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~~~~fD~V~~~-~vl~~~~~-----~~~~~~l~~~~r~LkpgG~li 182 (564)
.|+++...... ...+..+++...+...+ +.++||+|+|. .+++|++. +++..+|++++++|||||+|+
T Consensus 93 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 171 (292)
T d1xvaa_ 93 YALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 171 (292)
T ss_dssp HHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHhcccccccceeeeeeccccccccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEE
Confidence 99887543222 23344444433222112 35789999985 48888852 578899999999999999999
Q ss_pred EEecC
Q 008457 183 FRDYA 187 (564)
Q Consensus 183 i~~~~ 187 (564)
+..++
T Consensus 172 ~~~~~ 176 (292)
T d1xvaa_ 172 IDHRN 176 (292)
T ss_dssp EEEEC
T ss_pred EeecC
Confidence 96543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=1e-16 Score=150.24 Aligned_cols=136 Identities=14% Similarity=0.170 Sum_probs=108.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.++++.++|+.. .++.++||+|+++
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-----~~~~~~fD~V~an 191 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-----ALPFGPFDLLVAN 191 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-----HGGGCCEEEEEEE
T ss_pred CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-----cccccccchhhhc
Confidence 68899999999999999988876 6799999999999999999887666778888888743 2356899999997
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGF 233 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 233 (564)
...+ .+..+++++.++|||||+++++.+.. -..+.+.+.++++||
T Consensus 192 i~~~-----~l~~l~~~~~~~LkpGG~lilSgil~------------------------------~~~~~v~~~~~~~Gf 236 (254)
T d2nxca1 192 LYAE-----LHAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGF 236 (254)
T ss_dssp CCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTC
T ss_pred cccc-----cHHHHHHHHHHhcCCCcEEEEEecch------------------------------hhHHHHHHHHHHCCC
Confidence 5433 46678999999999999999864321 136788899999999
Q ss_pred cEEEeeeeeccccccccccccceeEEEEEEEe
Q 008457 234 DVEELGLCCKQVENRARELVMNRRWVQAVFCS 265 (564)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (564)
++++.... ..|+...++|
T Consensus 237 ~~~~~~~~--------------~~Wv~l~~~r 254 (254)
T d2nxca1 237 RPLEEAAE--------------GEWVLLAYGR 254 (254)
T ss_dssp EEEEEEEE--------------TTEEEEEEEC
T ss_pred EEEEEEEE--------------CCEEEEEEeC
Confidence 98765332 3488777765
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.65 E-value=4.3e-16 Score=144.06 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=110.6
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
+.+...++.+|||+|||+|..+.++++..|+..|+|+|+|+.|++.++.+... ..++..+..|..... ++.+..+|
T Consensus 68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-~~ni~~i~~d~~~~~---~~~~~~~~ 143 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-RENIIPILGDANKPQ---EYANIVEK 143 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-CTTEEEEECCTTCGG---GGTTTCCC
T ss_pred HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-hcccceEEEeeccCc---ccccccce
Confidence 34556899999999999999999999998889999999999999999887653 356777888776543 34566788
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHH
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLF 228 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 228 (564)
++++...++|. +++..++.++++.|||||.+++........ .........++..+.|
T Consensus 144 v~~i~~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d---------------------~~~~~~~~~~e~~~~L 200 (230)
T d1g8sa_ 144 VDVIYEDVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSID---------------------VTKDPKEIFKEQKEIL 200 (230)
T ss_dssp EEEEEECCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTC---------------------SSSCHHHHHHHHHHHH
T ss_pred eEEeeccccch--HHHHHHHHHHHHhcccCceEEEEeeccccC---------------------CCCCHHHHHHHHHHHH
Confidence 88887777777 578899999999999999999875432110 0000011246778899
Q ss_pred HhCCCcEEEee
Q 008457 229 KENGFDVEELG 239 (564)
Q Consensus 229 ~~aGf~~~~~~ 239 (564)
+++||++++..
T Consensus 201 ~~aGF~ive~i 211 (230)
T d1g8sa_ 201 EAGGFKIVDEV 211 (230)
T ss_dssp HHHTEEEEEEE
T ss_pred HHcCCEEEEEe
Confidence 99999988754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=1.6e-15 Score=137.34 Aligned_cols=163 Identities=16% Similarity=0.199 Sum_probs=116.3
Q ss_pred CCceEEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEE
Q 008457 323 EDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLV 402 (564)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v 402 (564)
++...++..+.|..+++.+.++.|.....+. ++..|.+.+ ...++.+|||+|||+|.++..++. .+.+|
T Consensus 9 ~~~~~~~~~~~g~~~~~~t~~gvF~~~~~d~------~t~lLi~~l----~~~~~~~VLDiGcG~G~~~~~la~-~~~~v 77 (194)
T d1dusa_ 9 SDVKIVEDILRGKKLKFKTDSGVFSYGKVDK------GTKILVENV----VVDKDDDILDLGCGYGVIGIALAD-EVKST 77 (194)
T ss_dssp CCEEEEEEEETTEEEEEEEETTSTTTTSCCH------HHHHHHHHC----CCCTTCEEEEETCTTSHHHHHHGG-GSSEE
T ss_pred cceEEEEEEECCeeEEEEcCCCccCCCCcCH------HHHHHHHhC----CcCCCCeEEEEeecCChhHHHHHh-hcccc
Confidence 5556778888999999988777764443333 455555543 445789999999999977766654 56789
Q ss_pred EEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCC-hHHHHHHHHHHh
Q 008457 403 VATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEA-ILPLFATAKELT 481 (564)
Q Consensus 403 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-~~~l~~~~~~ll 481 (564)
+++|+|+.+++.+++|+..|++.. .++.+..-|+.+. ..+++||+|++..++|.... ...+++.+.++|
T Consensus 78 ~~iD~s~~~i~~a~~n~~~~~l~~--~~i~~~~~d~~~~--------~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~L 147 (194)
T d1dusa_ 78 TMADINRRAIKLAKENIKLNNLDN--YDIRVVHSDLYEN--------VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELL 147 (194)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTT--SCEEEEECSTTTT--------CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHE
T ss_pred ceeeeccccchhHHHHHHHhCCcc--ceEEEEEcchhhh--------hccCCceEEEEcccEEecchhhhhHHHHHHHhc
Confidence 999999999999999999998742 3466665555321 24579999998877666444 578999999999
Q ss_pred hccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHH
Q 008457 482 ASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ 516 (564)
Q Consensus 482 ~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 516 (564)
+|+| .+++....... .+.+...+.+
T Consensus 148 -kpgG--------~l~i~~~~~~~-~~~~~~~l~~ 172 (194)
T d1dusa_ 148 -KDNG--------EIWVVIQTKQG-AKSLAKYMKD 172 (194)
T ss_dssp -EEEE--------EEEEEEESTHH-HHHHHHHHHH
T ss_pred -CcCc--------EEEEEEeCcCC-HHHHHHHHHH
Confidence 9988 77665443322 2234444444
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=2.4e-15 Score=143.30 Aligned_cols=102 Identities=22% Similarity=0.380 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.++.+|||||||+|.++..|++.+|+.+++|+|+|+.|++.|+++. .++.+.++|+... |+++++||+|++.
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----~~~~~~~~d~~~l----~~~~~sfD~v~~~ 154 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRL----PFSDTSMDAIIRI 154 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSC----SBCTTCEEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----ccccceeeehhhc----cCCCCCEEEEeec
Confidence 6788999999999999999999998999999999999999998764 4689999998653 6789999999998
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchh
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLA 192 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~ 192 (564)
++++| ++++.|+|||||.+++.+++.....
T Consensus 155 ~~~~~---------~~e~~rvLkpgG~l~~~~p~~~~l~ 184 (268)
T d1p91a_ 155 YAPCK---------AEELARVVKPGGWVITATPGPRHLM 184 (268)
T ss_dssp SCCCC---------HHHHHHHEEEEEEEEEEEECTTTTH
T ss_pred CCHHH---------HHHHHHHhCCCcEEEEEeeCCcchH
Confidence 88776 4578999999999999998876543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.61 E-value=3.1e-15 Score=139.62 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=104.4
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.+.++.+|||||||+|.++..++.. ..+|+++|+|+.+++.+++++..++. .++.+...++.+. ++++
T Consensus 12 ~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~----~~i~~~~~d~~~l-------~~~~ 79 (231)
T d1vl5a_ 12 ALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH----QQVEYVQGDAEQM-------PFTD 79 (231)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC----CSEEEEECCC-CC-------CSCT
T ss_pred CCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccc----ccccccccccccc-------cccc
Confidence 4557889999999999777666655 46899999999999999999988775 4678887777643 3457
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------------------cCChhH
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----------------------QVDEPS 509 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-----------------------~~~~~~ 509 (564)
++||+|++..++++..+...+++.+.++| +|+| .+++..... ......
T Consensus 80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~L-kpgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (231)
T d1vl5a_ 80 ERFHIVTCRIAAHHFPNPASFVSEAYRVL-KKGG--------QLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSD 150 (231)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHE-EEEE--------EEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred cccccccccccccccCCHHHHHHHHHHhc-CCCc--------EEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHH
Confidence 89999999999999999999999999999 9988 777654321 112234
Q ss_pred HHHHHHHcCCeEEEEc
Q 008457 510 MLSAATQCGFRLVDKW 525 (564)
Q Consensus 510 ~~~~~~~~g~~~~~~~ 525 (564)
+...++++||.++++.
T Consensus 151 ~~~~l~~aGf~~~~~~ 166 (231)
T d1vl5a_ 151 WLKMLEEAGFELEELH 166 (231)
T ss_dssp HHHHHHHHTCEEEEEE
T ss_pred HHHHHHHCCCEEEEEE
Confidence 6677888999987653
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.61 E-value=2.8e-15 Score=140.21 Aligned_cols=140 Identities=9% Similarity=0.089 Sum_probs=108.6
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.++|.+..++.++.+|||||||+|.++..++..+ .+|+++|+|+.+++.+++++..++. .++.+...|..+.
T Consensus 5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~----~~~~~~~~d~~~~--- 76 (234)
T d1xxla_ 5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGV----ENVRFQQGTAESL--- 76 (234)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTC----CSEEEEECBTTBC---
T ss_pred HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccc----ccccccccccccc---
Confidence 4555555567789999999999998888777764 6899999999999999999998876 3566666665432
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC-------------------
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV------------------- 505 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~------------------- 505 (564)
++++++||+|+++.++.+..+.+.+++.+.++| +|+| .++++......
T Consensus 77 ----~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~L-kpgG--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (234)
T d1xxla_ 77 ----PFPDDSFDIITCRYAAHHFSDVRKAVREVARVL-KQDG--------RFLLVDHYAPEDPVLDEFVNHLNRLRDPSH 143 (234)
T ss_dssp ----CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE-EEEE--------EEEEEEECBCSSHHHHHHHHHHHHHHCTTC
T ss_pred ----cccccccceeeeeceeecccCHHHHHHHHHHee-CCCc--------EEEEEEcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 356789999999999999999999999999999 9988 77775332211
Q ss_pred ----ChhHHHHHHHHcCCeEEEEc
Q 008457 506 ----DEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 506 ----~~~~~~~~~~~~g~~~~~~~ 525 (564)
+...+...+.+.||.+.++.
T Consensus 144 ~~~~~~~~~~~~~~~~gf~~~~~~ 167 (234)
T d1xxla_ 144 VRESSLSEWQAMFSANQLAYQDIQ 167 (234)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred cccCCHHHHHHHHHHCCCceeEEE
Confidence 12234556678899887764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.59 E-value=8.6e-15 Score=140.88 Aligned_cols=143 Identities=13% Similarity=0.154 Sum_probs=115.0
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+++.|.....+.++.+|||||||+|.++..++...+.+|+++|+++.+++.++++....++. .++.+...++.+.
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~---~~v~~~~~d~~~l-- 129 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA---DNITVKYGSFLEI-- 129 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT---TTEEEEECCTTSC--
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccc---ccccccccccccc--
Confidence 45555556677789999999999998888887766679999999999999999999888775 5788888877653
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-------------------
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------------- 504 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~------------------- 504 (564)
++++++||+|++.+++++..+...+++.+.++| +|+| .++++.....
T Consensus 130 -----~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~L-kpgG--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (282)
T d2o57a1 130 -----PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVL-KPRG--------VMAITDPMKEDGIDKSSIQPILDRIKLHD 195 (282)
T ss_dssp -----SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE-EEEE--------EEEEEEEEECTTCCGGGGHHHHHHHTCSS
T ss_pred -----cccccccchhhccchhhhccCHHHHHHHHHHhc-CCCc--------EEEEEEeecCCCCchhHHHHHHHHhccCC
Confidence 346689999999999999999999999999999 9988 7777644321
Q ss_pred -CChhHHHHHHHHcCCeEEEEc
Q 008457 505 -VDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 505 -~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+...+.+.+.++||....+.
T Consensus 196 ~~s~~~~~~~l~~~Gf~~i~~~ 217 (282)
T d2o57a1 196 MGSLGLYRSLAKECGLVTLRTF 217 (282)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEE
T ss_pred CCCHHHHHHHHHHcCCceEEEE
Confidence 112344667788999887765
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.8e-16 Score=144.79 Aligned_cols=106 Identities=12% Similarity=0.064 Sum_probs=87.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE-
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~- 152 (564)
.++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++......++.++..++... ..++++++||.|+.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~i~fD 128 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV--APTLPDGHFDGILYD 128 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH--GGGSCTTCEEEEEEC
T ss_pred cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhccccccccccccccc--ccccccccccceeec
Confidence 678899999999999999998764 46899999999999999999876667777777776432 22567889999984
Q ss_pred ----cccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 153 ----VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 153 ----~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
...++|+ .++..++++++|+|||||+|++.
T Consensus 129 ~~~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 129 TYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccccc--cCHHHHHHHHHHHcCCCcEEEEE
Confidence 5566676 58889999999999999999874
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=4.3e-15 Score=139.94 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=119.3
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 358 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 358 W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
+|.+....+.+.....+.++.+|||||||+|.++..++...+.+|+++|+|+.+++.+++++..+++. +++.+...|
T Consensus 15 ~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~---~~v~~~~~d 91 (245)
T d1nkva_ 15 NPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS---ERVHFIHND 91 (245)
T ss_dssp SSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESC
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhcc---ccchhhhhH
Confidence 45555556667777778899999999999998888777766679999999999999999999998875 578888777
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------- 503 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r-------------- 503 (564)
+.+. ..+++||+|++..++++..+++.+++.+.++| +|+| .+++.....
T Consensus 92 ~~~~--------~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~L-kPGG--------~l~i~~~~~~~~~~~~~~~~~~~ 154 (245)
T d1nkva_ 92 AAGY--------VANEKCDVAACVGATWIAGGFAGAEELLAQSL-KPGG--------IMLIGEPYWRQLPATEEIAQACG 154 (245)
T ss_dssp CTTC--------CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSE-EEEE--------EEEEEEEEETTCCSSHHHHHTTT
T ss_pred Hhhc--------cccCceeEEEEEehhhccCCHHHHHHHHHHHc-CcCc--------EEEEEeccccCCCChHHHHHHhc
Confidence 7543 24579999999999999999999999999999 9988 777765431
Q ss_pred ------cCChhHHHHHHHHcCCeEEEEc
Q 008457 504 ------QVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 504 ------~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
..+...+...+.+.||.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~aG~~~v~~~ 182 (245)
T d1nkva_ 155 VSSTSDFLTLPGLVGAFDDLGYDVVEMV 182 (245)
T ss_dssp CSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred cCCCcccCCHHHHHHHHHHcCCEEEEEE
Confidence 1122456788889999988764
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.55 E-value=1.2e-14 Score=131.37 Aligned_cols=119 Identities=18% Similarity=0.253 Sum_probs=96.0
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCC
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~ 142 (564)
...|.+.+. .++..|||||||+|.++..+++.+|+..++|+|+++.++..|.++....+ .|+.++++|+... ...+
T Consensus 19 ~~~w~~~F~-~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l--~~~~ 95 (204)
T d2fcaa1 19 KGKWNTVFG-NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL--TDVF 95 (204)
T ss_dssp TTCHHHHHT-SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH--HHHC
T ss_pred HhHHHHHcC-CCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhh--hccc
Confidence 344556555 45668999999999999999999999999999999999999988765433 6899999998643 2246
Q ss_pred CCCceeEEEEcccccCCChhH------HHHHHHHHHhccCCCeEEEEEe
Q 008457 143 SPSSIDIVTMVFVLSAVSPEK------MSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~------~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+++++|.|++.+...|..... ...+|+.+.++|||||.|++.+
T Consensus 96 ~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 96 EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 889999999988887764221 1479999999999999998864
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.55 E-value=7.1e-15 Score=132.01 Aligned_cols=114 Identities=21% Similarity=0.202 Sum_probs=93.4
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccccc
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLS 139 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~ 139 (564)
.+...+...+.+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++.+..+ .+++++++|+....
T Consensus 20 eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~-- 95 (186)
T d1l3ia_ 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL-- 95 (186)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH--
T ss_pred HHHHHHHHhcCCCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc--
Confidence 45555566677799999999999999999999876 5689999999999999999876544 58999999975432
Q ss_pred CCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 140 RQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 140 ~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.+...||+|++....++ ...+++.+.+.|||||++++...
T Consensus 96 --~~~~~~D~v~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 96 --CKIPDIDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp --TTSCCEEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred --cccCCcCEEEEeCcccc-----chHHHHHHHHHhCcCCEEEEEee
Confidence 35578999999876654 35689999999999999988643
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.5e-14 Score=132.50 Aligned_cols=135 Identities=14% Similarity=0.023 Sum_probs=101.5
Q ss_pred CCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 371 NPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 371 ~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
.+....+.+|||||||+|.++..++...+.+|+++|+|+.+++.+++++..++. ..+.+...|..+. +.
T Consensus 55 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~----~~~~f~~~d~~~~-------~~ 123 (222)
T d2ex4a1 55 GPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK----RVRNYFCCGLQDF-------TP 123 (222)
T ss_dssp ---CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG----GEEEEEECCGGGC-------CC
T ss_pred ccCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc----ccccccccccccc-------cc
Confidence 344557789999999999877777777778999999999999999999877654 3455555544322 23
Q ss_pred cCCCccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-------------CChhHHHHHHH
Q 008457 451 NNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------VDEPSMLSAAT 515 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~-------------~~~~~~~~~~~ 515 (564)
++++||+|++.+++++... ...+++.++++| +|+| .+++...... .+...+.+.+.
T Consensus 124 ~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~L-k~~G--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 194 (222)
T d2ex4a1 124 EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSL-RPNG--------IIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIIC 194 (222)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHH
T ss_pred ccccccccccccccccchhhhhhhHHHHHHHhc-CCcc--------eEEEEEcccccccccccCCceeeCCHHHHHHHHH
Confidence 4679999999999988654 457999999999 9988 7777644321 12356788888
Q ss_pred HcCCeEEEEc
Q 008457 516 QCGFRLVDKW 525 (564)
Q Consensus 516 ~~g~~~~~~~ 525 (564)
++||++++.-
T Consensus 195 ~aGf~ii~~~ 204 (222)
T d2ex4a1 195 SAGLSLLAEE 204 (222)
T ss_dssp HTTCCEEEEE
T ss_pred HcCCEEEEEE
Confidence 9999998764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.53 E-value=1.2e-14 Score=135.96 Aligned_cols=138 Identities=22% Similarity=0.229 Sum_probs=103.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
+.+..+.++|.... .++++|||+|||+|.++..++.. +.+|+++|+|+.+++.+++|+..|++. +++...++
T Consensus 105 ~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av~~A~~na~~n~~~-----~~~~~~d~ 176 (254)
T d2nxca1 105 ETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVR-----PRFLEGSL 176 (254)
T ss_dssp HHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCC-----CEEEESCH
T ss_pred chhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHHHHHHHHHHHcCCc-----eeEEeccc
Confidence 35666777777653 48899999999999777665554 568999999999999999999999874 23333322
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG 518 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g 518 (564)
. . .++.++||+|+++ .....+..+++.+.++| +|+| .++++...... .+.+.+.+.+.|
T Consensus 177 ~------~--~~~~~~fD~V~an---i~~~~l~~l~~~~~~~L-kpGG--------~lilSgil~~~-~~~v~~~~~~~G 235 (254)
T d2nxca1 177 E------A--ALPFGPFDLLVAN---LYAELHAALAPRYREAL-VPGG--------RALLTGILKDR-APLVREAMAGAG 235 (254)
T ss_dssp H------H--HGGGCCEEEEEEE---CCHHHHHHHHHHHHHHE-EEEE--------EEEEEEEEGGG-HHHHHHHHHHTT
T ss_pred c------c--cccccccchhhhc---cccccHHHHHHHHHHhc-CCCc--------EEEEEecchhh-HHHHHHHHHHCC
Confidence 1 1 2345799999975 22334788899999999 9988 88887554432 346888889999
Q ss_pred CeEEEEc
Q 008457 519 FRLVDKW 525 (564)
Q Consensus 519 ~~~~~~~ 525 (564)
|++.+..
T Consensus 236 f~~~~~~ 242 (254)
T d2nxca1 236 FRPLEEA 242 (254)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9998875
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.52 E-value=1.1e-14 Score=135.82 Aligned_cols=150 Identities=19% Similarity=0.289 Sum_probs=108.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
....+|||||||+|.++..+++++|+.+++..|+ |..++.+. ...+++++.+|+.+ ++| ..|++++.
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~-----~~~ri~~~~gd~~~-----~~p--~~D~~~l~ 146 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP-----PLSGIEHVGGDMFA-----SVP--QGDAMILK 146 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CCTTEEEEECCTTT-----CCC--CEEEEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC-----CCCCeEEecCCccc-----ccc--cceEEEEe
Confidence 5668999999999999999999999999999998 55543221 24689999999864 234 45999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcc-cccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTG-KDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
++||++++++...+|+++++.|+|||.+++.+...++........ ....+...+.....+.. .|.++|.++|+++|
T Consensus 147 ~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~e---rt~~e~~~ll~~AG 223 (244)
T d1fp1d2 147 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRE---RTEKQYEKLSKLSG 223 (244)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCC---EEHHHHHHHHHHTT
T ss_pred hhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcC---CCHHHHHHHHHHcC
Confidence 999999999999999999999999999999886533211000000 00000000000112222 37999999999999
Q ss_pred CcEEEee
Q 008457 233 FDVEELG 239 (564)
Q Consensus 233 f~~~~~~ 239 (564)
|+.+++.
T Consensus 224 F~~v~v~ 230 (244)
T d1fp1d2 224 FSKFQVA 230 (244)
T ss_dssp CSEEEEE
T ss_pred CCceEEE
Confidence 9998764
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.50 E-value=4.3e-14 Score=127.76 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=91.4
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc---CCCeeEEEecCCcccccCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~---~~~i~~~~~d~~~~~~~~~~ 142 (564)
.+.+.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++.... ..++++..+|+.. ++
T Consensus 43 lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-----~~ 115 (194)
T d1dusa_ 43 ILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-----NV 115 (194)
T ss_dssp HHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-----TC
T ss_pred HHHHhCCcCCCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-----hh
Confidence 3455666688999999999999999999887 458999999999999999876432 2468888888753 34
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++++||+|+++.++|+.. +....+++++.+.|||||.+++..
T Consensus 116 ~~~~fD~Ii~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 116 KDRKYNKIITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TTSCEEEEEECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCceEEEEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEEE
Confidence 678999999998887663 446789999999999999998753
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=3.6e-14 Score=132.75 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=92.9
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccc----cCCCeeEEEecCCcccccC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF----TETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~----~~~~i~~~~~d~~~~~~~~ 140 (564)
.+...+...|+.+|||+|||+|.++..|++. +|+.+|+++|+++++++.|+++... ...++.+.+.|+...
T Consensus 87 ~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~---- 162 (264)
T d1i9ga_ 87 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS---- 162 (264)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC----
T ss_pred HHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc----
Confidence 3344566689999999999999999999988 7889999999999999999987543 246889999988653
Q ss_pred CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++++++||.|++ +++ ++..++.+++++|||||.+++..++
T Consensus 163 ~~~~~~fDaV~l-----dlp--~P~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 163 ELPDGSVDRAVL-----DML--APWEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp CCCTTCEEEEEE-----ESS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred cccCCCcceEEE-----ecC--CHHHHHHHHHhccCCCCEEEEEeCc
Confidence 457899999987 564 6678999999999999999987654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.48 E-value=5.2e-14 Score=131.19 Aligned_cols=151 Identities=19% Similarity=0.278 Sum_probs=108.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
....+|||||||+|.++..+++++|+.+++..|+ |..++.+. ...+++++.+|+.+. .+ .+|++++.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~-----~~~rv~~~~gD~f~~-----~p--~aD~~~l~ 145 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS-----GSNNLTYVGGDMFTS-----IP--NADAVLLK 145 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CBTTEEEEECCTTTC-----CC--CCSEEEEE
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc-----ccCceEEEecCcccC-----CC--CCcEEEEE
Confidence 4567899999999999999999999999999998 55554332 246899999998642 23 57999999
Q ss_pred ccccCCChhHHHHHHHHHHhccCCC---eEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHh
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPT---GYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKE 230 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~Lkpg---G~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 230 (564)
++||++++++..++|+++++.|+|| |++++.+...++............+.........+. ..|.++|+++|++
T Consensus 146 ~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~---ert~~e~~~ll~~ 222 (244)
T d1fp2a2 146 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGK---ERNEEEWKKLFIE 222 (244)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCC---CEEHHHHHHHHHH
T ss_pred eecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCc---CCCHHHHHHHHHH
Confidence 9999999999999999999999998 788887754432211110000000000000011222 2379999999999
Q ss_pred CCCcEEEeee
Q 008457 231 NGFDVEELGL 240 (564)
Q Consensus 231 aGf~~~~~~~ 240 (564)
+||+.+++..
T Consensus 223 AGf~~~~i~~ 232 (244)
T d1fp2a2 223 AGFQHYKISP 232 (244)
T ss_dssp TTCCEEEEEE
T ss_pred cCCceEEEEE
Confidence 9999987643
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=2.3e-13 Score=129.61 Aligned_cols=145 Identities=12% Similarity=0.103 Sum_probs=112.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
.|.....+.+.+...+.+|.+|||||||+|+++..++...+.+|+++|+|++.++.+++.+...++. ..+.+...|+
T Consensus 35 ~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~---~~~~~~~~d~ 111 (280)
T d2fk8a1 35 EAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN---RSRQVLLQGW 111 (280)
T ss_dssp HHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS---SCEEEEESCG
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccc---cchhhhhhhh
Confidence 3445567788888888899999999999999988887776679999999999999999999887764 4455554443
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-------------
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------- 503 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r------------- 503 (564)
.+ .+++||.|++.+++.+. ...+.+++.+.++| +|+| ++++.....
T Consensus 112 ~~----------~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~L-kpgG--------~~~i~~i~~~~~~~~~~~~~~~ 172 (280)
T d2fk8a1 112 ED----------FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIM-PADG--------RMTVQSSVSYHPYEMAARGKKL 172 (280)
T ss_dssp GG----------CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHS-CTTC--------EEEEEEEECCCHHHHHTTCHHH
T ss_pred hh----------hccchhhhhHhhHHHHhhhhhHHHHHHHHHhcc-CCCc--------eEEEEEeeccCcchhhhccccc
Confidence 21 24699999999999886 46699999999999 9998 777654221
Q ss_pred --------------------cCChhHHHHHHHHcCCeEEEEc
Q 008457 504 --------------------QVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 504 --------------------~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
..+...+.+.+++.||.+.++.
T Consensus 173 ~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~aGf~v~~~~ 214 (280)
T d2fk8a1 173 SFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPL 214 (280)
T ss_dssp HHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCE
T ss_pred ccccccccchhhhhccCCCcccchHhhhhhHHhhccccceee
Confidence 1122346677778899988765
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=4.9e-13 Score=127.53 Aligned_cols=147 Identities=14% Similarity=0.111 Sum_probs=115.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
+|.....+++.....+.+|.+|||||||.|+++..++...+.+|+++++|++.++.+++.+...++. .++.+...|+
T Consensus 44 ~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~---~~v~~~~~d~ 120 (291)
T d1kpia_ 44 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP---RRKEVRIQGW 120 (291)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCS---SCEEEEECCG
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccc---hhhhhhhhcc
Confidence 4556678888888888999999999999999998888777789999999999999999998887774 5566655544
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCCC---------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIPE---------AILPLFATAKELTASSNKSLREDQQPAFILCHIFR------ 503 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r------ 503 (564)
. ..+++||.|++-.++.+.. .++.+++.+.++| +|+| ++++.....
T Consensus 121 ~----------~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~L-kpgG--------~~~l~~i~~~~~~~~ 181 (291)
T d1kpia_ 121 E----------EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLT-PDDG--------RMLLHTITIPDKEEA 181 (291)
T ss_dssp G----------GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTS-CTTC--------EEEEEEEECCCHHHH
T ss_pred c----------ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhC-CCCC--------ceEEEEEeccCcchh
Confidence 2 2457999999999998864 3789999999999 9988 777654321
Q ss_pred ---------------------------cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 ---------------------------QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 ---------------------------~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
-.+...+...+++.||+|+++...
T Consensus 182 ~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~~ 232 (291)
T d1kpia_ 182 QELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRI 232 (291)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhcccccccceeeec
Confidence 112345567778899999988643
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.48 E-value=4.5e-14 Score=131.26 Aligned_cols=107 Identities=21% Similarity=0.130 Sum_probs=88.0
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCC
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPS 145 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~ 145 (564)
..+...++.+|||+|||+|.++..|++. .|+.+|+++|.++++++.|+++.... ..++++..+|+.. .++++
T Consensus 79 ~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~-----~~~~~ 153 (250)
T d1yb2a1 79 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-----FISDQ 153 (250)
T ss_dssp --CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-----CCCSC
T ss_pred HHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeec-----ccccc
Confidence 3455589999999999999999999987 67889999999999999999987543 3689999999854 24678
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.||+|++ +++ ++..++.++.++|||||++++..+.
T Consensus 154 ~fD~V~l-----d~p--~p~~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 154 MYDAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp CEEEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred eeeeeee-----cCC--chHHHHHHHHHhcCCCceEEEEeCC
Confidence 9999987 343 4567899999999999999986543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=6.2e-13 Score=126.45 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=118.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
.|...+.+++.....+.+|.+|||||||.|+++..++...+.+|+++++|++-++.+++.+...++. +++.+...|+
T Consensus 45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~---~~v~~~~~d~ 121 (285)
T d1kpga_ 45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL---RSKRVLLAGW 121 (285)
T ss_dssp HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC---SCEEEEESCG
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhh---hhhHHHHhhh
Confidence 5566788999998889999999999999999999888877789999999999999999998887764 6788877776
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-------------
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------- 503 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r------------- 503 (564)
... +++||.|++..++.+. .....+++.+.++| +|+| ++++.....
T Consensus 122 ~~~----------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~L-kpgG--------~~~l~~i~~~~~~~~~~~~~~~ 182 (285)
T d1kpga_ 122 EQF----------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLL-PADG--------VMLLHTITGLHPKEIHERGLPM 182 (285)
T ss_dssp GGC----------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHS-CTTC--------EEEEEEEEECCHHHHTTTTCSC
T ss_pred hcc----------cccccceeeehhhhhcCchhHHHHHHHHHhhc-CCCC--------cEEEEEEeccCchhhccccCCc
Confidence 422 4689999999999886 56799999999999 9988 666543321
Q ss_pred --------------------cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 504 --------------------QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 504 --------------------~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
-.+...+...+++.||+|+++...
T Consensus 183 ~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 183 SFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSL 226 (285)
T ss_dssp HHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred chhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchhhcccccc
Confidence 112334556778899999988643
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=9.2e-14 Score=127.03 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=89.7
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSR 140 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 140 (564)
+...+.+.+...++.+|||||||+|..+..+++. .+..+|+++|+++.+++.|+++..... .++.++++|....
T Consensus 63 ~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~---- 138 (213)
T d1dl5a1 63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG---- 138 (213)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----
T ss_pred hhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHc----
Confidence 3445566777899999999999999999999886 467899999999999999999876433 6788888887542
Q ss_pred CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
...+++||+|++..++++++. ++.+.|||||++++.
T Consensus 139 ~~~~~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 139 VPEFSPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp CGGGCCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred cccccchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 224678999999999999862 356789999999884
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.47 E-value=2.8e-13 Score=122.37 Aligned_cols=118 Identities=16% Similarity=0.239 Sum_probs=94.3
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~ 143 (564)
..|.+++. .....|||||||+|.++..+++.+|+..++|+|+++.++..|.++....+ .|+.+..+|+... ...++
T Consensus 22 ~~w~~~f~-~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l--~~~~~ 98 (204)
T d1yzha1 22 AKWRDLFG-NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL--TDYFE 98 (204)
T ss_dssp TTHHHHHT-SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG--GGTSC
T ss_pred ccHHHHcC-CCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHH--hhhcc
Confidence 34555554 35668999999999999999999999999999999999999987765443 6899999998653 33568
Q ss_pred CCceeEEEEcccccCCChhH------HHHHHHHHHhccCCCeEEEEEe
Q 008457 144 PSSIDIVTMVFVLSAVSPEK------MSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~------~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++++|.|++++.-.|..... ...+|+.+.++|||||.|++.+
T Consensus 99 ~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 99 DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp TTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 89999999877655542111 2579999999999999998864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.47 E-value=9.8e-14 Score=126.20 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=86.9
Q ss_pred ccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
+...|+.+|||+|||+|..+.++++..|..+|+|+|+|+.|++.|+++... ..++.++..|....... +.....+|+|
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-~~ni~~i~~d~~~~~~~-~~~~~~vd~v 129 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWKY-SGIVEKVDLI 129 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGGT-TTTCCCEEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-cCCceEEEeeccCcccc-ccccceEEEE
Confidence 456899999999999999999999988878999999999999999887654 35889999988664432 1122345555
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
++ .+.|. .+...++++++++|||||.+++...
T Consensus 130 ~~--~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 130 YQ--DIAQK--NQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp EE--CCCST--THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Ee--cccCh--hhHHHHHHHHHHHhccCCeEEEEEE
Confidence 43 34454 4778899999999999999998753
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=1.8e-13 Score=128.86 Aligned_cols=132 Identities=15% Similarity=0.055 Sum_probs=102.7
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~ 142 (564)
.+...+...++.+|||+|||+|.++..|++. .|+++|+++|+++++++.|+++....+ .++.+...|+.. .+
T Consensus 94 ~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-----~~ 168 (266)
T d1o54a_ 94 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-----GF 168 (266)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-----CC
T ss_pred HHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-----cc
Confidence 3345566689999999999999999999987 578899999999999999999876443 466666666532 45
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHH
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSND 222 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (564)
....||.|+. +++ ++..+++++.++|||||.+++..+... ..+
T Consensus 169 ~~~~~D~V~~-----d~p--~p~~~l~~~~~~LKpGG~lv~~~P~~~------------------------------Qv~ 211 (266)
T d1o54a_ 169 DEKDVDALFL-----DVP--DPWNYIDKCWEALKGGGRFATVCPTTN------------------------------QVQ 211 (266)
T ss_dssp SCCSEEEEEE-----CCS--CGGGTHHHHHHHEEEEEEEEEEESSHH------------------------------HHH
T ss_pred cccceeeeEe-----cCC--CHHHHHHHHHhhcCCCCEEEEEeCccc------------------------------HHH
Confidence 6778998875 664 677899999999999999998654321 235
Q ss_pred HHHHHHHhCCCcEEEee
Q 008457 223 FLTSLFKENGFDVEELG 239 (564)
Q Consensus 223 ~l~~~l~~aGf~~~~~~ 239 (564)
.+.+.+++.||..+++.
T Consensus 212 ~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 212 ETLKKLQELPFIRIEVW 228 (266)
T ss_dssp HHHHHHHHSSEEEEEEE
T ss_pred HHHHHHHHCCceeEEEE
Confidence 56678888999766543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.41 E-value=1.5e-12 Score=119.39 Aligned_cols=111 Identities=16% Similarity=0.213 Sum_probs=88.7
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
.+...++.+|||+|||+|.++.+|++. +|+.+|+|+|+|+.|++.++++... ..++..+..|....... +.....+|
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-~~~~~~i~~d~~~~~~~-~~~~~~vD 145 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-RRNIVPILGDATKPEEY-RALVPKVD 145 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-CTTEEEEECCTTCGGGG-TTTCCCEE
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-cCCceEEEEECCCcccc-cccccceE
Confidence 445689999999999999999999997 5789999999999999999987653 35677778887654332 33456788
Q ss_pred EEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 149 ~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+|++. +.|. ++...+++++++.|||||.+++...
T Consensus 146 ~i~~d--~~~~--~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 146 VIFED--VAQP--TQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EEEEC--CCST--THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEE--cccc--chHHHHHHHHHHhcccCCeEEEEEE
Confidence 88763 3344 4778899999999999999998754
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.40 E-value=5.3e-13 Score=123.54 Aligned_cols=125 Identities=11% Similarity=0.105 Sum_probs=96.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++++|||||||+|.++..++..+ .+|+++|+|+++++.++++.. ..+.+..-++.+. ..+++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g-~~v~giD~s~~~i~~a~~~~~--------~~~~~~~~~~~~~--------~~~~~ 81 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLK--------DGITYIHSRFEDA--------QLPRR 81 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGGC--------CCSSC
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcC-CeEEEEeCcHHHhhhhhcccc--------ccccccccccccc--------ccccc
Confidence 478899999999998877776554 579999999999999987632 2355554444321 13568
Q ss_pred ccEEEEeceeeCCCChHHHHHHHH-HHhhccCCCCCCCCCcEEEEEEee-------------------------------
Q 008457 455 FEVILGTDVSYIPEAILPLFATAK-ELTASSNKSLREDQQPAFILCHIF------------------------------- 502 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~-~ll~~~~g~~~~~~~~~~~~~~~~------------------------------- 502 (564)
||+|++.+++.+..+...++..+. ++| +|+| .++++.+.
T Consensus 82 fD~I~~~~vleh~~d~~~~l~~i~~~~L-k~gG--------~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 152 (225)
T d2p7ia1 82 YDNIVLTHVLEHIDDPVALLKRINDDWL-AEGG--------RLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHR 152 (225)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHTTE-EEEE--------EEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCC
T ss_pred cccccccceeEecCCHHHHHHHHHHHhc-CCCc--------eEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeee
Confidence 999999999999999999999997 789 9988 78877542
Q ss_pred ccCChhHHHHHHHHcCCeEEEEc
Q 008457 503 RQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 503 r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
|..+...+.+.+.++||++++.-
T Consensus 153 ~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 153 CTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEEE
T ss_pred eccCHHHHHHHHHHCCCEEEEEE
Confidence 22344567888999999998854
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5.7e-13 Score=122.41 Aligned_cols=111 Identities=16% Similarity=0.080 Sum_probs=88.4
Q ss_pred hHHHHhhhc--cCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhccccc------CCCeeEEEecC
Q 008457 63 LDKEWGRYF--SGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT------ETRVSTFVCDL 133 (564)
Q Consensus 63 ~~~~~~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~------~~~i~~~~~d~ 133 (564)
+...+.+++ ...++.+|||||||+|..+..|++. .+..+|+++|.++++++.|+++.... ..++.+.++|.
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 334555555 4478999999999999999999886 56789999999999999998876432 25788888887
Q ss_pred CcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 134 ISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 134 ~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
... ..+.++||+|++..++++++. .+.+.|||||++++..
T Consensus 142 ~~~----~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 142 RMG----YAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp GGC----CGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred ccc----cchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEEE
Confidence 543 225678999999999999862 3678899999999854
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.39 E-value=1.4e-12 Score=122.78 Aligned_cols=140 Identities=9% Similarity=0.017 Sum_probs=101.8
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
.++.++.......+.+|||+|||+|.++..++..+..+|+++|.++.+++.++++.... ..+++...+..+.
T Consensus 81 ~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~------~~~~~~~~d~~~~-- 152 (254)
T d1xtpa_ 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM------PVGKFILASMETA-- 152 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS------SEEEEEESCGGGC--
T ss_pred HHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc------ccceeEEcccccc--
Confidence 34444444444577899999999998888777777779999999999999999875431 2345544433221
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc--------------CCh
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------VDE 507 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~--------------~~~ 507 (564)
+.++++||+|++..++++..+ ...+++.++++| +|+| .+++...... .+.
T Consensus 153 -----~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~L-kpgG--------~iii~e~~~~~~~~~~d~~d~~~~rs~ 218 (254)
T d1xtpa_ 153 -----TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQAL-TPNG--------YIFFKENCSTGDRFLVDKEDSSLTRSD 218 (254)
T ss_dssp -----CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEEBC--CCEEEETTTTEEEBCH
T ss_pred -----ccCCCccceEEeeccccccchhhhHHHHHHHHHhc-CCCc--------EEEEEecCCCCCcceecccCCceeCCH
Confidence 234679999999999998755 458899999999 9988 7776544311 123
Q ss_pred hHHHHHHHHcCCeEEEEc
Q 008457 508 PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 508 ~~~~~~~~~~g~~~~~~~ 525 (564)
..+.+.++++||++++..
T Consensus 219 ~~~~~l~~~aGf~ii~~~ 236 (254)
T d1xtpa_ 219 IHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp HHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHcCCEEEEEE
Confidence 467788889999998754
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.38 E-value=2.4e-13 Score=117.24 Aligned_cols=108 Identities=18% Similarity=0.248 Sum_probs=86.5
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+.|++|||||||||.++..++.+++++|+++|.++.+++.+++|++.++.. +++.+...|+.+ . .+....+
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~---~~~~ii~~D~~~-----~-l~~~~~~ 83 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE---NRFTLLKMEAER-----A-IDCLTGR 83 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG---GGEEEECSCHHH-----H-HHHBCSC
T ss_pred CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccc---cchhhhcccccc-----c-ccccccc
Confidence 589999999999999999999999999999999999999999999998874 556666554321 1 2345679
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHH--HhhccCCCCCCCCCcEEEEEEe
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKE--LTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~--ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
||+|++ |+.|........++.+.. +| +++| .+++.+.
T Consensus 84 fDiIf~-DPPy~~~~~~~~l~~i~~~~~L-~~~g--------~iiiE~~ 122 (152)
T d2esra1 84 FDLVFL-DPPYAKETIVATIEALAAKNLL-SEQV--------MVVCETD 122 (152)
T ss_dssp EEEEEE-CCSSHHHHHHHHHHHHHHTTCE-EEEE--------EEEEEEE
T ss_pred cceeEe-chhhccchHHHHHHHHHHCCCc-CCCe--------EEEEEeC
Confidence 999885 888988888888888764 57 7766 6666543
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=2.9e-12 Score=120.39 Aligned_cols=129 Identities=16% Similarity=0.271 Sum_probs=101.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..+.+|||+|||+|..+..++...|..+|+++|+|+.+++.|+++....+ .+++++++|+.. ++++++||+|++
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-----~~~~~~fDlIvs 181 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-----ALAGQQFAMIVS 181 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-----GGTTCCEEEEEE
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-----ccCCCceeEEEe
Confidence 56789999999999999999999999999999999999999999876555 469999999854 346779999999
Q ss_pred ccc-------------ccCCC----------hhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceee
Q 008457 153 VFV-------------LSAVS----------PEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYV 209 (564)
Q Consensus 153 ~~v-------------l~~~~----------~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (564)
+-- +.|-| ......+++++.+.|+|||.+++. .+.
T Consensus 182 NPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE-ig~--------------------- 239 (274)
T d2b3ta1 182 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE-HGW--------------------- 239 (274)
T ss_dssp CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE-CCS---------------------
T ss_pred cchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE-ECc---------------------
Confidence 632 11211 134567889999999999999884 221
Q ss_pred cCCCceeeccCHHHHHHHHHhCCCcEEEe
Q 008457 210 RGDGTRAFYFSNDFLTSLFKENGFDVEEL 238 (564)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 238 (564)
-..+.+.+++++.||..+++
T Consensus 240 ---------~q~~~v~~~l~~~gf~~i~~ 259 (274)
T d2b3ta1 240 ---------QQGEAVRQAFILAGYHDVET 259 (274)
T ss_dssp ---------SCHHHHHHHHHHTTCTTCCE
T ss_pred ---------hHHHHHHHHHHHCCCCeEEE
Confidence 13567889999999976543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.37 E-value=3.7e-12 Score=117.76 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=81.3
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
.++.+|||||||+|.++..++.. ...+|+++|+|+.|++.+++++...+.. ..+....-+.. +++
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~---~~~~~~~~d~~---------~~~ 105 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE---IPVEILCNDIR---------HVE 105 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS---SCEEEECSCTT---------TCC
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc---chhhhccchhh---------ccc
Confidence 36789999999999777766653 3569999999999999999998876543 33444332221 234
Q ss_pred CCCccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 452 NEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
...+|+|+++-++++. ++...+++.+.+.| +|+| .+++...
T Consensus 106 ~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~L-kpgG--------~li~~~~ 148 (225)
T d1im8a_ 106 IKNASMVILNFTLQFLPPEDRIALLTKIYEGL-NPNG--------VLVLSEK 148 (225)
T ss_dssp CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHE-EEEE--------EEEEEEE
T ss_pred cccceeeEEeeeccccChhhHHHHHHHHHHhC-CCCc--------eeecccc
Confidence 5689999999888764 57889999999999 9988 7887643
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.36 E-value=9.5e-13 Score=117.84 Aligned_cols=126 Identities=13% Similarity=0.157 Sum_probs=93.0
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.+.++.+|||+|||+|.++..++. .+.+|+++|.++.+++.+++|+..+++. .++++..-|..+ . ....
T Consensus 30 ~~~~g~~VLDiGcGsG~~s~~lA~-~~~~V~avD~~~~~l~~a~~n~~~~gl~---~~v~~~~gda~~-----~--~~~~ 98 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGTGGVTLELAG-RVRRVYAIDRNPEAISTTEMNLQRHGLG---DNVTLMEGDAPE-----A--LCKI 98 (186)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHTTCC---TTEEEEESCHHH-----H--HTTS
T ss_pred CCCCCCEEEEEECCeEcccccccc-cceEEEEecCCHHHHHHHHHHHHHcCCC---cceEEEECchhh-----c--cccc
Confidence 445899999999999988777655 4679999999999999999999999885 467766544321 1 1234
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEE
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV 522 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~ 522 (564)
..||+|++.... .....+++.+.++| +|+| .+++..... .....+.+.+.+.|+.+.
T Consensus 99 ~~~D~v~~~~~~---~~~~~~~~~~~~~L-kpgG--------~lvi~~~~~-e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 99 PDIDIAVVGGSG---GELQEILRIIKDKL-KPGG--------RIIVTAILL-ETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp CCEEEEEESCCT---TCHHHHHHHHHHTE-EEEE--------EEEEEECBH-HHHHHHHHHHHHTTCCCE
T ss_pred CCcCEEEEeCcc---ccchHHHHHHHHHh-CcCC--------EEEEEeecc-ccHHHHHHHHHHcCCCeE
Confidence 689999976543 45788999999999 9987 666554322 223356777778887654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.35 E-value=1.9e-12 Score=119.66 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=85.8
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+..++.+.. .++.+|||||||+|.++..++.. +.+|+++|+|+.+++.+++++...+. .+.....|..+.
T Consensus 27 ~~~~~~~~l--~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~-----~~~~~~~d~~~l-- 96 (226)
T d1ve3a1 27 LEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRES-----NVEFIVGDARKL-- 96 (226)
T ss_dssp HHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-----CCEEEECCTTSC--
T ss_pred HHHHHHHhc--CCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccccc-----cccccccccccc--
Confidence 344555442 36789999999999777777654 56899999999999999998876553 233333333322
Q ss_pred chhhhhhcCCCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
++++++||+|++.+++.+.. +...+++.+.++| +|+| .+++....
T Consensus 97 -----~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~L-kpgG--------~lii~~~~ 143 (226)
T d1ve3a1 97 -----SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVL-KPSG--------KFIMYFTD 143 (226)
T ss_dssp -----CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHE-EEEE--------EEEEEEEC
T ss_pred -----cccCcCceEEEEecchhhCChhHHHHHHHHHHHHc-CcCc--------EEEEEEcC
Confidence 34567999999999998854 6778999999999 9988 77766543
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.5e-12 Score=125.65 Aligned_cols=111 Identities=17% Similarity=0.105 Sum_probs=85.1
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccc------------cCCCeeEEEecCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF------------TETRVSTFVCDLI 134 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~------------~~~~i~~~~~d~~ 134 (564)
...+...++.+|||+|||+|.++..|++. +|+.+|+++|+++++++.|+++... ...++.+...|+.
T Consensus 91 l~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~ 170 (324)
T d2b25a1 91 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDIS 170 (324)
T ss_dssp HHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTT
T ss_pred HHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchh
Confidence 44556689999999999999999999987 6788999999999999999986532 2468899999986
Q ss_pred cccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 135 SDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 135 ~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.... .++...||.|++ .+| ++..++.++.++|||||.|++..++
T Consensus 171 ~~~~--~~~~~~fD~V~L-----D~p--~P~~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 171 GATE--DIKSLTFDAVAL-----DML--NPHVTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp CCC---------EEEEEE-----CSS--STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred hccc--ccCCCCcceEee-----cCc--CHHHHHHHHHHhccCCCEEEEEeCC
Confidence 4322 446778999987 343 3456899999999999999986543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.35 E-value=2.8e-13 Score=126.46 Aligned_cols=150 Identities=21% Similarity=0.262 Sum_probs=105.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.+..+|||||||+|.++..+++++|+.+++++|+.+ .++.++ ...++++..+|+.. ++|. .|++++.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~-----~~~r~~~~~~d~~~-----~~P~--ad~~~l~ 146 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP-----SYPGVEHVGGDMFV-----SIPK--ADAVFMK 146 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC-----CCTTEEEEECCTTT-----CCCC--CSCEECS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc-----cCCceEEecccccc-----cCCC--cceEEEE
Confidence 345789999999999999999999999999999854 333222 23679999999864 2343 5778889
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhccccc-cccccee-ecCCCceeeccCHHHHHHHHHhC
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQ-KISENFY-VRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
+++|.+++++...+|+++++.|+|||.+++.+....+........... .+.-.+. ....+.. .+.++|+++|+++
T Consensus 147 ~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~e---rt~~e~~~ll~~A 223 (243)
T d1kyza2 147 WICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKE---RTQKEFEDLAKGA 223 (243)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCC---EEHHHHHHHHHHH
T ss_pred EEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCc---CCHHHHHHHHHHc
Confidence 999999999999999999999999999999876432111000000000 0000000 0011211 3789999999999
Q ss_pred CCcEEEee
Q 008457 232 GFDVEELG 239 (564)
Q Consensus 232 Gf~~~~~~ 239 (564)
||+.+++.
T Consensus 224 Gf~~vkv~ 231 (243)
T d1kyza2 224 GFQGFKVH 231 (243)
T ss_dssp CCSCEEEE
T ss_pred CCCcEEEE
Confidence 99998764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.2e-13 Score=127.85 Aligned_cols=143 Identities=11% Similarity=0.055 Sum_probs=100.5
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCc----------------------
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAK---------------------- 430 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~---------------------- 430 (564)
...++.+|||||||+|.++..++..+..+|+++|+|+.+++.+++++..+........
T Consensus 48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3457889999999999777777767777899999999999999999887654321100
Q ss_pred -eEEE-EeecCCCccchhhhhhcCCCccEEEEeceeeCC----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-
Q 008457 431 -LITK-RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP----EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR- 503 (564)
Q Consensus 431 -i~~~-~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r- 503 (564)
..+. ....... ......+...++||+|++..++.+. +....+++.+.++| +|+| .++++...+
T Consensus 128 ~~~~~~~~~~~~~-~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~L-kpGG--------~li~~~~~~~ 197 (257)
T d2a14a1 128 RAAVKRVLKCDVH-LGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLL-KPGG--------HLVTTVTLRL 197 (257)
T ss_dssp HHHEEEEEECCTT-SSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE-EEEE--------EEEEEEESSC
T ss_pred hhhhhcccccccc-cccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhcc-CCCc--------EEEEEEeccc
Confidence 0001 1111111 1111123567799999999888654 46778999999999 9988 777765442
Q ss_pred -------------cCChhHHHHHHHHcCCeEEEEc
Q 008457 504 -------------QVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 504 -------------~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
..+...+.+.++++||+++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 232 (257)
T d2a14a1 198 PSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLL 232 (257)
T ss_dssp CEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccceeccccccccCCCHHHHHHHHHHCCCEEEEEE
Confidence 2345678889999999998874
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.34 E-value=2.3e-12 Score=117.63 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=87.1
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCC
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI 142 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 142 (564)
+...+.+.+...++.+|||||||+|.++..|++. ..+|+++|+++.+++.|+++... ..++.++.+|.... . .
T Consensus 58 ~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~-~~nv~~~~~d~~~g-~---~ 130 (224)
T d1vbfa_ 58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSY-YNNIKLILGDGTLG-Y---E 130 (224)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT-CSSEEEEESCGGGC-C---G
T ss_pred hHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhc-ccccccccCchhhc-c---h
Confidence 3344556677799999999999999999999988 67899999999999999987653 46899999987532 1 1
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
..++||+|++..++++++. .+.+.|||||+|++-
T Consensus 131 ~~~pfD~Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 131 EEKPYDRVVVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp GGCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred hhhhHHHHHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 3578999999999998862 356789999999884
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.6e-12 Score=122.22 Aligned_cols=145 Identities=16% Similarity=0.192 Sum_probs=103.5
Q ss_pred echhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE
Q 008457 357 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435 (564)
Q Consensus 357 ~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~ 435 (564)
.=+-+..|.++.+.... ..+.+|||||||+|.++..++... ..+|+++|+|+.+++.+++|+..++. .++.+..
T Consensus 90 PRpeTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~----~~v~~~~ 164 (274)
T d2b3ta1 90 PRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI----KNIHILQ 164 (274)
T ss_dssp CCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC----CSEEEEC
T ss_pred cccchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc----ccceeee
Confidence 33445566666655322 256789999999998888777754 56999999999999999999999987 3578877
Q ss_pred eecCCCccchhhhhhcCCCccEEEEeceeeCCC-------------------------ChHHHHHHHHHHhhccCCCCCC
Q 008457 436 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE-------------------------AILPLFATAKELTASSNKSLRE 490 (564)
Q Consensus 436 l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-------------------------~~~~l~~~~~~ll~~~~g~~~~ 490 (564)
-||.+. +...+||+|+++....... .+..+++...++| +++|
T Consensus 165 ~d~~~~--------~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L-~~~G---- 231 (274)
T d2b3ta1 165 SDWFSA--------LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL-VSGG---- 231 (274)
T ss_dssp CSTTGG--------GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGE-EEEE----
T ss_pred cccccc--------cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhc-CCCC----
Confidence 777532 3456999999876543322 2455778888889 8877
Q ss_pred CCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 491 DQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 491 ~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+++-....+ .....+.+.+.||...+++
T Consensus 232 ----~l~lEig~~q--~~~v~~~l~~~gf~~i~~~ 260 (274)
T d2b3ta1 232 ----FLLLEHGWQQ--GEAVRQAFILAGYHDVETC 260 (274)
T ss_dssp ----EEEEECCSSC--HHHHHHHHHHTTCTTCCEE
T ss_pred ----EEEEEECchH--HHHHHHHHHHCCCCeEEEE
Confidence 7777543333 3456777788999754443
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.33 E-value=1.2e-11 Score=113.73 Aligned_cols=153 Identities=19% Similarity=0.146 Sum_probs=110.6
Q ss_pred cceechhHH-HHHHHHhc---CCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCC
Q 008457 354 GLMLWESAH-LMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFL 428 (564)
Q Consensus 354 G~~~W~~~~-~l~~~l~~---~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~ 428 (564)
..+.|+.-+ .||..+.. ...+.+|.+|||||||+|..+..++... ...|+++|+|+.+++.++.++..+
T Consensus 48 e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~------ 121 (230)
T d1g8sa_ 48 EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER------ 121 (230)
T ss_dssp EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC------
T ss_pred eeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh------
Confidence 467786654 56666655 3346689999999999998888887764 459999999999999998876543
Q ss_pred CceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh-
Q 008457 429 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE- 507 (564)
Q Consensus 429 ~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~- 507 (564)
..+.....+..... .+.+..+|+++....+++......++..+.++| +|+| .++++...+..+.
T Consensus 122 ~ni~~i~~d~~~~~------~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~L-KpgG--------~~~i~~k~~~~d~~ 186 (230)
T d1g8sa_ 122 ENIIPILGDANKPQ------EYANIVEKVDVIYEDVAQPNQAEILIKNAKWFL-KKGG--------YGMIAIKARSIDVT 186 (230)
T ss_dssp TTEEEEECCTTCGG------GGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHE-EEEE--------EEEEEEEGGGTCSS
T ss_pred cccceEEEeeccCc------ccccccceeEEeeccccchHHHHHHHHHHHHhc-ccCc--------eEEEEeeccccCCC
Confidence 23444444433221 234557788777777888888999999999999 9988 7777766654321
Q ss_pred -------hHHHHHHHHcCCeEEEEcCC
Q 008457 508 -------PSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 508 -------~~~~~~~~~~g~~~~~~~~~ 527 (564)
....+.++++||++.+..+.
T Consensus 187 ~~~~~~~~e~~~~L~~aGF~ive~idL 213 (230)
T d1g8sa_ 187 KDPKEIFKEQKEILEAGGFKIVDEVDI 213 (230)
T ss_dssp SCHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 23446777899999987644
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.33 E-value=4.2e-12 Score=119.49 Aligned_cols=139 Identities=9% Similarity=0.027 Sum_probs=104.5
Q ss_pred CCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh
Q 008457 371 NPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE 449 (564)
Q Consensus 371 ~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~ 449 (564)
..+..+.++|||||||+|.++..++... ..+++++|+ +++++.+++++...+.. .++.+...|..+.
T Consensus 75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~rv~~~~~D~~~~-------- 142 (253)
T d1tw3a2 75 AYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS---DRVDVVEGDFFEP-------- 142 (253)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT---TTEEEEECCTTSC--------
T ss_pred hcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcc---cchhhccccchhh--------
Confidence 3345567899999999998888887765 458999998 78999999999887764 6788877665432
Q ss_pred hcCCCccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------------------
Q 008457 450 ENNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------------------ 503 (564)
Q Consensus 450 ~~~~~fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r------------------------ 503 (564)
.+.+||+|+++.++++..+ ...+++.+.+.| +|+| ++++.....
T Consensus 143 -~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L-kPGG--------~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~ 212 (253)
T d1tw3a2 143 -LPRKADAIILSFVLLNWPDHDAVRILTRCAEAL-EPGG--------RILIHERDDLHENSFNEQFTELDLRMLVFLGGA 212 (253)
T ss_dssp -CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTE-EEEE--------EEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCC
T ss_pred -cccchhheeeccccccCCchhhHHHHHHHHHhc-CCCc--------EEEEEeccCCCCCcchhHHHHhhHHHHhhCCCc
Confidence 2357999999999988644 457899999999 9988 777764321
Q ss_pred cCChhHHHHHHHHcCCeEEEEcCCCCCC
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWPSKNSA 531 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 531 (564)
..+..++.+.++++||+++++.....|.
T Consensus 213 ~rt~~e~~~ll~~AGf~~~~v~~~~~p~ 240 (253)
T d1tw3a2 213 LRTREKWDGLAASAGLVVEEVRQLPSPT 240 (253)
T ss_dssp CCBHHHHHHHHHHTTEEEEEEEEEECSS
T ss_pred CCCHHHHHHHHHHCCCeEEEEEECCCCC
Confidence 0123456677889999999987654443
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.3e-12 Score=127.58 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=89.5
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc----------cCCCeeEEEecCC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF----------TETRVSTFVCDLI 134 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~----------~~~~i~~~~~d~~ 134 (564)
..+.+.+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.|+..... ...+++++++|+.
T Consensus 141 ~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~ 220 (328)
T d1nw3a_ 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 220 (328)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred HHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence 444556667889999999999999999999887777899999999999999875432 2467999999997
Q ss_pred cccccCCCCCCc--eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 135 SDDLSRQISPSS--IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 135 ~~~~~~~~~~~~--fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
...+ .+.. .|+|+++. +.|. .++...|+++.+.|||||++++..
T Consensus 221 ~~~~----~~~~~~advi~~~~-~~f~--~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 221 SEEW----RERIANTSVIFVNN-FAFG--PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp SHHH----HHHHHHCSEEEECC-TTTC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccc----ccccCcceEEEEcc-eecc--hHHHHHHHHHHHhCCCCcEEEEec
Confidence 5433 2322 46777654 4455 578899999999999999998754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.31 E-value=3.5e-12 Score=118.25 Aligned_cols=137 Identities=10% Similarity=0.143 Sum_probs=97.8
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
+.++.....+.+|.+|||+|||+|.++..++.. ...+|+++|.++++++.+++|+..+... .++.+..-|..+.
T Consensus 74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~---~nv~~~~~Di~~~- 149 (250)
T d1yb2a1 74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI---GNVRTSRSDIADF- 149 (250)
T ss_dssp -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC---TTEEEECSCTTTC-
T ss_pred HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC---CceEEEEeeeecc-
Confidence 345556667889999999999999888777754 3469999999999999999999886543 5677776665432
Q ss_pred cchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEE
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV 522 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~ 522 (564)
+.+..||.|+. +.......++.+.++| +|+| ++++. ...-.......+.+++.||...
T Consensus 150 -------~~~~~fD~V~l-----d~p~p~~~l~~~~~~L-KpGG--------~lv~~-~P~i~Qv~~~~~~l~~~gf~~i 207 (250)
T d1yb2a1 150 -------ISDQMYDAVIA-----DIPDPWNHVQKIASMM-KPGS--------VATFY-LPNFDQSEKTVLSLSASGMHHL 207 (250)
T ss_dssp -------CCSCCEEEEEE-----CCSCGGGSHHHHHHTE-EEEE--------EEEEE-ESSHHHHHHHHHHSGGGTEEEE
T ss_pred -------cccceeeeeee-----cCCchHHHHHHHHHhc-CCCc--------eEEEE-eCCcChHHHHHHHHHHCCCcee
Confidence 24568999874 3455667899999999 9988 55443 3322223467888889999887
Q ss_pred EEcCC
Q 008457 523 DKWPS 527 (564)
Q Consensus 523 ~~~~~ 527 (564)
+++++
T Consensus 208 ~~~E~ 212 (250)
T d1yb2a1 208 ETVEL 212 (250)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=5.7e-12 Score=114.99 Aligned_cols=119 Identities=11% Similarity=0.146 Sum_probs=90.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||||||+|.++..+ ++++++|+|+.+++.++++ .+.+...+-.+. ++++++|
T Consensus 36 ~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~-----------~~~~~~~d~~~l-------~~~~~~f 92 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR-----------GVFVLKGTAENL-------PLKDESF 92 (208)
T ss_dssp CSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT-----------TCEEEECBTTBC-------CSCTTCE
T ss_pred CCCeEEEECCCCccccccc-----ceEEEEeCChhhccccccc-----------cccccccccccc-------ccccccc
Confidence 4568999999999665444 2479999999999998864 133333332211 3456799
Q ss_pred cEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----------------------cCChhHHHHH
Q 008457 456 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR----------------------QVDEPSMLSA 513 (564)
Q Consensus 456 D~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r----------------------~~~~~~~~~~ 513 (564)
|+|++..++++..+...+++.+.++| +|+| .+++..... -.+..++.+.
T Consensus 93 D~I~~~~~l~h~~d~~~~l~~~~~~L-~pgG--------~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 163 (208)
T d1vlma_ 93 DFALMVTTICFVDDPERALKEAYRIL-KKGG--------YLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDL 163 (208)
T ss_dssp EEEEEESCGGGSSCHHHHHHHHHHHE-EEEE--------EEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHH
T ss_pred cccccccccccccccccchhhhhhcC-CCCc--------eEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHH
Confidence 99999999999999999999999999 9988 777776531 1233567888
Q ss_pred HHHcCCeEEEEcC
Q 008457 514 ATQCGFRLVDKWP 526 (564)
Q Consensus 514 ~~~~g~~~~~~~~ 526 (564)
+.++||++.++.+
T Consensus 164 l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 164 MRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHTTCEEEEEEE
T ss_pred HHHcCCeEEEEEE
Confidence 9999999888764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.27 E-value=1.1e-11 Score=112.18 Aligned_cols=97 Identities=25% Similarity=0.263 Sum_probs=78.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++.+|||||||+|..+..++.++ .+|+++|+|+.+++.+++++...+. ..+.+...|..+.. .+++|
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g-~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~d~~~~~--------~~~~f 96 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANG-YDVTAWDKNPASMANLERIKAAEGL----DNLQTDLVDLNTLT--------FDGEY 96 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC----TTEEEEECCTTTCC--------CCCCE
T ss_pred CCCcEEEECCCCCHHHHHHHHHh-hhhccccCcHHHHHHHHHHhhhccc----cchhhhheeccccc--------ccccc
Confidence 55699999999998887777664 5899999999999999999887766 35666666654331 35689
Q ss_pred cEEEEeceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 456 EVILGTDVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 456 D~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
|+|++..++++. .....+++.+.++| +|+|
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG 128 (198)
T d2i6ga1 97 DFILSTVVMMFLEAQTIPGLIANMQRCT-KPGG 128 (198)
T ss_dssp EEEEEESCGGGSCTTHHHHHHHHHHHTE-EEEE
T ss_pred cEEEEeeeeecCCHHHHHHHHHHHHHHc-CCCc
Confidence 999999998874 45778999999999 9987
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.27 E-value=5.2e-12 Score=118.92 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=83.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
++++|||||||+|.....++..+.++|+|+|+|+.+++.|++....++.. .++.+...|...... ...++|
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~---~~v~f~~~D~~~~~~------~~~~~f 94 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR---FKVFFRAQDSYGRHM------DLGKEF 94 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS---SEEEEEESCTTTSCC------CCSSCE
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCC---cceEEEEcchhhhcc------cccccc
Confidence 77899999999998887777777789999999999999999887765542 456666665433211 134689
Q ss_pred cEEEEeceeeCC----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 456 EVILGTDVSYIP----EAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 456 D~Ii~~d~~y~~----~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
|+|++..++++. +....+++.+.++| +|+| .++++.+
T Consensus 95 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~L-k~gG--------~~i~~~~ 135 (252)
T d1ri5a_ 95 DVISSQFSFHYAFSTSESLDIAQRNIARHL-RPGG--------YFIMTVP 135 (252)
T ss_dssp EEEEEESCGGGGGSSHHHHHHHHHHHHHTE-EEEE--------EEEEEEE
T ss_pred eEEEEcceeeecCCCHHHHHHHHHHHhcee-CCCC--------EEEEEec
Confidence 999999887663 45678999999999 9988 7777644
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=5.8e-12 Score=118.04 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=77.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
.+.+|||+|||+|.++..++.. +.+|+++|+|+.+++.+++|...+ ....+.. .+ ++++++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~----------~~~~~~~---~l----~~~~~~f 103 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGVKN----------VVEAKAE---DL----PFPSGAF 103 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTCSC----------EEECCTT---SC----CSCTTCE
T ss_pred CCCEEEEECCCCchhccccccc-ceEEEEeecccccccccccccccc----------ccccccc---cc----ccccccc
Confidence 6789999999999887777665 568999999999999999863221 1112211 11 3457899
Q ss_pred cEEEEe-ceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 456 EVILGT-DVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 456 D~Ii~~-d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
|+|++. +++++..+...+++.+.++| +|+| .++++.+.
T Consensus 104 D~ii~~~~~~~~~~d~~~~l~~i~r~L-k~gG--------~~ii~~~~ 142 (246)
T d2avna1 104 EAVLALGDVLSYVENKDKAFSEIRRVL-VPDG--------LLIATVDN 142 (246)
T ss_dssp EEEEECSSHHHHCSCHHHHHHHHHHHE-EEEE--------EEEEEEEB
T ss_pred cceeeecchhhhhhhHHHHHHHHHhhc-CcCc--------EEEEEECC
Confidence 999974 78888899999999999999 9988 88777653
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.26 E-value=3.5e-11 Score=108.34 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=82.5
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
...+|++|||+|||||+++..++..++.+|+++|+|+.+++.+++|+..++. ...+...|.. . .+
T Consensus 43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-----~~~~~~~d~~---------~-~~ 107 (201)
T d1wy7a1 43 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-----KFKVFIGDVS---------E-FN 107 (201)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-----SEEEEESCGG---------G-CC
T ss_pred CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-----CceEEECchh---------h-hC
Confidence 4458999999999999998888888888999999999999999999888764 2344333321 1 24
Q ss_pred CCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHH-HHHHHcCCeEEEEc
Q 008457 453 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML-SAATQCGFRLVDKW 525 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~g~~~~~~~ 525 (564)
.+||+|++ |+.|.......-...+...+ ...+ .++..+...... ..++ ......|+.+....
T Consensus 108 ~~fD~Vi~-nPP~~~~~~~~d~~~l~~~~-~~~~--------~v~~ih~~~~~~-~~~i~~~~~~~g~~i~~~~ 170 (201)
T d1wy7a1 108 SRVDIVIM-NPPFGSQRKHADRPFLLKAF-EISD--------VVYSIHLAKPEV-RRFIEKFSWEHGFVVTHRL 170 (201)
T ss_dssp CCCSEEEE-CCCCSSSSTTTTHHHHHHHH-HHCS--------EEEEEEECCHHH-HHHHHHHHHHTTEEEEEEE
T ss_pred CcCcEEEE-cCccccccccccHHHHHHHH-hhcc--------cchhcccchHHH-HHHHHHHHhhcCceEEEEE
Confidence 68999986 55565332222122233344 4333 555544333222 2343 44567788887764
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.25 E-value=1.6e-11 Score=110.02 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=79.7
Q ss_pred ccCCCCCeEEEEcCCccccHHHH----HHh----CCCcEEEEEeCChHHHHHHHhccc------------------ccC-
Q 008457 71 FSGAGRKDVLEVGCGAGNTIFPL----IAA----YPDVFVYACDFSPRAVNLVMTHKD------------------FTE- 123 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~G~~~~~l----~~~----~~~~~v~~iD~s~~~l~~a~~~~~------------------~~~- 123 (564)
++..+..+||++|||+|.-...| .+. ....+++|+|+|+.+++.|++-.- ...
T Consensus 20 ~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~ 99 (193)
T d1af7a2 20 RRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTG 99 (193)
T ss_dssp HHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCT
T ss_pred hccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCC
Confidence 34456789999999999855444 332 124689999999999999985210 000
Q ss_pred -------------CCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 124 -------------TRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 124 -------------~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
..+.+...+.... .+.+.+.||+|+|.+||.+++++...++++++++.|+|||+|++.
T Consensus 100 ~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 100 PHEGLVRVRQELANYVEFSSVNLLEK---QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp TSCSEEEECHHHHTTEEEEECCTTCS---SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CccceeehHHHHHHHHHHhhhhcccc---ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1123333333221 123467899999999999999888899999999999999999873
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.24 E-value=3.8e-11 Score=112.46 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=73.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.++++|||+|||+|.++..++..+ .+|+++|+|+.|++.|++++..++. ++++..-|+.+. + .+++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g-~~v~GvD~S~~ml~~A~~~~~~~~~-----~v~~~~~d~~~~-------~-~~~~ 101 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGL-----KPRLACQDISNL-------N-INRK 101 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTC-----CCEEECCCGGGC-------C-CSCC
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC-CccEeeccchhhhhhccccccccCc-----cceeeccchhhh-------c-cccc
Confidence 356899999999998888777665 4899999999999999998877654 355555444322 1 2468
Q ss_pred ccEEEEe-ceeeC---CCChHHHHHHHHHHhhccCC
Q 008457 455 FEVILGT-DVSYI---PEAILPLFATAKELTASSNK 486 (564)
Q Consensus 455 fD~Ii~~-d~~y~---~~~~~~l~~~~~~ll~~~~g 486 (564)
||+|++. .++.+ .+....+++.+.++| +|+|
T Consensus 102 fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG 136 (246)
T d1y8ca_ 102 FDLITCCLDSTNYIIDSDDLKKYFKAVSNHL-KEGG 136 (246)
T ss_dssp EEEEEECTTGGGGCCSHHHHHHHHHHHHTTE-EEEE
T ss_pred ccccceeeeeeeccCCHHHHHHHHHHHHHhC-CCCe
Confidence 9999975 55443 346677899999999 9988
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=1.5e-11 Score=107.80 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=82.3
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
.|.+|+..+ +.++.+|||+|||+|.++..++..++ +|+++|.|+.+++.+++|++.|+.. .++ ... +.+
T Consensus 30 ~lf~~l~~~--~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~---~~v--~~~---~~d 98 (171)
T d1ws6a1 30 ALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLG---ARV--VAL---PVE 98 (171)
T ss_dssp HHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCC---CEE--ECS---CHH
T ss_pred HHHHHhhcc--ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccc---cce--eee---ehh
Confidence 355566543 34788999999999988888777665 7999999999999999999999874 222 211 111
Q ss_pred cchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHH-HHhhccCCCCCCCCCcEEEEEEee
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAK-ELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~-~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
...........+||+|+ .|+.|.....+.+...+. .+| +++| .+++.+..
T Consensus 99 ~~~~~~~~~~~~fD~If-~DPPY~~~~~~~l~~l~~~~ll-~~~g--------~ivie~~~ 149 (171)
T d1ws6a1 99 VFLPEAKAQGERFTVAF-MAPPYAMDLAALFGELLASGLV-EAGG--------LYVLQHPK 149 (171)
T ss_dssp HHHHHHHHTTCCEEEEE-ECCCTTSCTTHHHHHHHHHTCE-EEEE--------EEEEEEET
T ss_pred cccccccccCCccceeE-EccccccCHHHHHHHHHHcCCc-CCCe--------EEEEEecC
Confidence 21112234567899987 488898776665555554 367 8776 66665443
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=1e-11 Score=120.70 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=83.8
Q ss_pred HhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh
Q 008457 368 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI 447 (564)
Q Consensus 368 l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~ 447 (564)
+..+...+++++|||||||+|.++.+++..++++|+++|.++. ...+++++..|+.. +++.+..-+..+.
T Consensus 25 i~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~---~~v~~~~~~~~~~------ 94 (316)
T d1oria_ 25 MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLD---HVVTIIKGKVEEV------ 94 (316)
T ss_dssp HHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCT---TTEEEEESCTTTC------
T ss_pred HHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCc---cccceEeccHHHc------
Confidence 4445556789999999999998888888888889999999875 56778888888875 5677776555433
Q ss_pred hhhcCCCccEEEEece---eeCCCChHHHHHHHHHHhhccCC
Q 008457 448 KEENNEGFEVILGTDV---SYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 448 ~~~~~~~fD~Ii~~d~---~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+++..+||+|++.-+ +++...++.+++.+.++| +|+|
T Consensus 95 -~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~L-kp~G 134 (316)
T d1oria_ 95 -ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWL-APDG 134 (316)
T ss_dssp -CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHE-EEEE
T ss_pred -ccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcC-CCCe
Confidence 235579999986533 445678999999999999 9987
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=1.5e-11 Score=115.61 Aligned_cols=98 Identities=17% Similarity=0.109 Sum_probs=75.0
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..+.++|||+|||+|.++..++..+ .+|+++|+|+.|++.+++++..++. ++.+..-|+.+. ++ ++
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~-~~v~gvD~s~~mi~~a~~~~~~~~~-----~i~~~~~d~~~l-------~~-~~ 104 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNL-----KIEFLQGDVLEI-------AF-KN 104 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----CCEEEESCGGGC-------CC-CS
T ss_pred CCCCCEEEEeCCCCCccchhhcccc-eEEEEEeeccccccccccccccccc-----cchheehhhhhc-------cc-cc
Confidence 3467799999999998877777665 5899999999999999999887664 355555554332 12 35
Q ss_pred CccEEEEe-ceeeCC--CChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGT-DVSYIP--EAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~-d~~y~~--~~~~~l~~~~~~ll~~~~g 486 (564)
+||+|++. .++++. +....+++.+.++| +|+|
T Consensus 105 ~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~L-kpgG 139 (251)
T d1wzna1 105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEAL-KPGG 139 (251)
T ss_dssp CEEEEEECSSGGGGSCHHHHHHHHHHHHHHE-EEEE
T ss_pred ccchHhhhhhhhhcCChHHHHHHHHHHHHHc-CCCc
Confidence 89999986 455443 35668999999999 9988
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=9.7e-12 Score=121.64 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc--cCCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||||||+|.++..+++.+ ..+|+++|.|+ ++..|++.... ...++.++.+++... ++++++||+|+
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l----~~~~~~~D~i~ 110 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDV----HLPFPKVDIII 110 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS----CCSSSCEEEEE
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhc----cCcccceeEEE
Confidence 468999999999999998888873 35899999986 56677665433 346789999998654 44778999999
Q ss_pred EcccccCCC-hhHHHHHHHHHHhccCCCeEEE
Q 008457 152 MVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 152 ~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~li 182 (564)
+..+.+++. ...+..++..+.++|||||.++
T Consensus 111 se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 987776654 3467788999999999999986
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.21 E-value=1.7e-11 Score=110.95 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=90.2
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSR 140 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 140 (564)
.+...+.+.+...++.+|||||||+|+.+..|++.. +.+|+++|.++.+++.|+++....+ .++.+.++|......
T Consensus 65 ~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~-- 141 (215)
T d1jg1a_ 65 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP-- 141 (215)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--
T ss_pred hhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc--
Confidence 444566677788999999999999999999998764 5679999999999999999876544 789999999864321
Q ss_pred CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 141 QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
..++||+|++..++.++|.. +.+.|+|||++++-
T Consensus 142 --~~~pfD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 142 --PKAPYDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP 175 (215)
T ss_dssp --GGCCEEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred --ccCcceeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence 46789999999999988622 55679999999874
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.21 E-value=1.1e-10 Score=112.33 Aligned_cols=171 Identities=16% Similarity=0.106 Sum_probs=114.6
Q ss_pred EEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCC
Q 008457 329 EVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGD 408 (564)
Q Consensus 329 ~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~ 408 (564)
.+...|..+.|.... ...||+.+ .-...-.++... ..+|++|||++||+|+++..++..++.+|+++|.|
T Consensus 107 ~v~E~Gl~f~vdl~~------g~ktGlfl--DqR~~r~~l~~~--~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s 176 (317)
T d2b78a2 107 LILENGISYNVFLND------GLMTGIFL--DQRQVRNELING--SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLA 176 (317)
T ss_dssp EEEETTEEEEECSSS------SSCCSSCG--GGHHHHHHHHHT--TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESC
T ss_pred eeeeCCEEEEEEccc------ccccCCcH--HHHHHHHHHHHH--hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCC
Confidence 344566666664322 24566432 222222333332 23789999999999999988877788899999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh--hcCCCccEEEEeceeeCC---------CChHHHHHHH
Q 008457 409 SIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE--ENNEGFEVILGTDVSYIP---------EAILPLFATA 477 (564)
Q Consensus 409 ~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~--~~~~~fD~Ii~~d~~y~~---------~~~~~l~~~~ 477 (564)
+.+++.+++|++.|++.. .++++...| .++.+.. ....+||+||.-..-+.. ..+..|++.+
T Consensus 177 ~~a~~~a~~N~~~n~l~~--~~~~~i~~d-----~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a 249 (317)
T d2b78a2 177 KRSRALSLAHFEANHLDM--ANHQLVVMD-----VFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQG 249 (317)
T ss_dssp TTHHHHHHHHHHHTTCCC--TTEEEEESC-----HHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccC--cceEEEEcc-----HHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999853 345554432 2222221 235689999854443321 2467799999
Q ss_pred HHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHH----HHcCCeEEEEc
Q 008457 478 KELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGFRLVDKW 525 (564)
Q Consensus 478 ~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~----~~~g~~~~~~~ 525 (564)
.++| +|+| .+++|......+.+.|.+.+ ...|..+..+.
T Consensus 250 ~~ll-~pgG--------~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~~ 292 (317)
T d2b78a2 250 LEIL-SENG--------LIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQ 292 (317)
T ss_dssp HHTE-EEEE--------EEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHc-CCCC--------EEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 9999 9988 88888888777777676554 34566666654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=1.9e-11 Score=108.71 Aligned_cols=127 Identities=16% Similarity=0.262 Sum_probs=101.6
Q ss_pred chhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc-c
Q 008457 61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL-S 139 (564)
Q Consensus 61 ~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~-~ 139 (564)
..+..++.+.+.+.++..+||++||+|.++..+++.+|+++|+|+|.++.|++.|+++......++.++++++..... .
T Consensus 9 pVll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 9 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 88 (192)
T ss_dssp CTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred chHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence 345677788888899999999999999999999999999999999999999999999987767789999998754321 1
Q ss_pred CCCCCCceeEEEEccccc--CC-----ChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 140 RQISPSSIDIVTMVFVLS--AV-----SPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 140 ~~~~~~~fD~V~~~~vl~--~~-----~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
..+..++||.|+.-..+- ++ ........|..+.++|+|||.+++.++.
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 133467999998854331 11 1245678899999999999999987654
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.21 E-value=8.1e-11 Score=110.51 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=102.7
Q ss_pred CCCCCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh
Q 008457 371 NPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE 449 (564)
Q Consensus 371 ~~~~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~ 449 (564)
..++...++|||||||+|.++..++.+.+ .+++++|+ |++++.+++++...+.. +++.+...|..+.
T Consensus 76 ~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~---~ri~~~~~d~~~~-------- 143 (256)
T d1qzza2 76 AYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA---DRVTVAEGDFFKP-------- 143 (256)
T ss_dssp TSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT---TTEEEEECCTTSC--------
T ss_pred cCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCc---ceeeeeeeecccc--------
Confidence 33445667999999999988888887764 49999998 88999999999887764 5677766554321
Q ss_pred hcCCCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------------------
Q 008457 450 ENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIF------------------------- 502 (564)
Q Consensus 450 ~~~~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~------------------------- 502 (564)
.+.+||+|++..++++.. ....+++.+.+.| +|+| ++++....
T Consensus 144 -~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~L-kpgG--------~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g 213 (256)
T d1qzza2 144 -LPVTADVVLLSFVLLNWSDEDALTILRGCVRAL-EPGG--------RLLVLDRADVEGDGADRFFSTLLDLRMLTFMGG 213 (256)
T ss_dssp -CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEECCH-------HHHHHHHHHHHHHHHSC
T ss_pred -ccccchhhhccccccccCcHHHHHHHHHHHhhc-CCcc--------eeEEEEeccCCCCcccHHHHHHHHHHHHhhCCC
Confidence 234799999999998865 3467899999999 9988 77776432
Q ss_pred ccCChhHHHHHHHHcCCeEEEEcCCC
Q 008457 503 RQVDEPSMLSAATQCGFRLVDKWPSK 528 (564)
Q Consensus 503 r~~~~~~~~~~~~~~g~~~~~~~~~~ 528 (564)
+..+..++.+.++++||+++++....
T Consensus 214 ~~rt~~e~~~ll~~AGf~~~~~~~~~ 239 (256)
T d1qzza2 214 RVRTRDEVVDLAGSAGLALASERTSG 239 (256)
T ss_dssp CCCCHHHHHHHHHTTTEEEEEEEEEC
T ss_pred ccCCHHHHHHHHHHCCCceeEEEEeC
Confidence 11134467788889999999987543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=7.5e-11 Score=109.84 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=94.0
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
...+|||||||+|.++.+++... ..+|+++|+++++++.+++|++.|++. +++.+...+|... ....+.....++
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~---~~~~~~~~~~~~~-~~~~~~~~~~~~ 136 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS---DLIKVVKVPQKTL-LMDALKEESEII 136 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTCS-STTTSTTCCSCC
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC---cceeeeeeccHHh-hhhhhhhcccCc
Confidence 45699999999998888877754 569999999999999999999999985 6788877777543 222233334568
Q ss_pred ccEEEEeceeeCCCC-----------------------------------hHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 008457 455 FEVILGTDVSYIPEA-----------------------------------ILPLFATAKELTASSNKSLREDQQPAFILC 499 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~-----------------------------------~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~ 499 (564)
||+|+++...|.... +..+++....++ +..| .+.+
T Consensus 137 fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~-~~~g---------~~t~ 206 (250)
T d2h00a1 137 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLK-KRLR---------WYSC 206 (250)
T ss_dssp BSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHG-GGBS---------CEEE
T ss_pred eeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHh-hcCc---------EEEE
Confidence 999998887774211 233444555556 5544 3333
Q ss_pred EeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 500 HIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 500 ~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
...|......+...+.+.|+.-.++.
T Consensus 207 ~ig~~~~l~~i~~~L~~~g~~~i~~i 232 (250)
T d2h00a1 207 MLGKKCSLAPLKEELRIQGVPKVTYT 232 (250)
T ss_dssp EESSTTSHHHHHHHHHHTTCSEEEEE
T ss_pred EecchhhHHHHHHHHHHcCCCeEEEE
Confidence 34455555567888889998654443
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=1.4e-11 Score=120.52 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=82.8
Q ss_pred CCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 372 PTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 372 ~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...+++++|||||||+|.++.+++..++++|+++|.++ ++..+++++..|+.. .++.+...+..+. +++
T Consensus 34 ~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~---~~i~~i~~~~~~l-------~~~ 102 (328)
T d1g6q1_ 34 KDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFS---DKITLLRGKLEDV-------HLP 102 (328)
T ss_dssp HHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCT---TTEEEEESCTTTS-------CCS
T ss_pred cccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCcc---ccceEEEeehhhc-------cCc
Confidence 34458899999999999888888888888999999986 678899999998875 5677766655433 345
Q ss_pred CCCccEEEEece---eeCCCChHHHHHHHHHHhhccCC
Q 008457 452 NEGFEVILGTDV---SYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 452 ~~~fD~Ii~~d~---~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+.+||+|++..+ +.+....+.++..+.++| +|+|
T Consensus 103 ~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~L-kpgG 139 (328)
T d1g6q1_ 103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHYL-VEGG 139 (328)
T ss_dssp SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHE-EEEE
T ss_pred ccceeEEEEEecceeeccchhHHHHHHHHHhcc-CCCe
Confidence 679999997544 455778999999999999 9987
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.20 E-value=1.1e-10 Score=112.75 Aligned_cols=170 Identities=15% Similarity=0.127 Sum_probs=111.0
Q ss_pred EEEEEeCCceEEEEEecccccccCCCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEc
Q 008457 327 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 406 (564)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD 406 (564)
.+.+...|..+.+.... ...||..+ ..+..-.++ . ..+|++|||+|||+|+++..++ .++++|+++|
T Consensus 108 ~~~v~E~G~~f~v~l~~------~~~tG~fl--Dqr~~r~~~-~---~~~g~rVLDl~~gtG~~s~~~a-~g~~~V~~vD 174 (318)
T d1wxxa2 108 RVQVQEGRVRYLVDLRA------GQKTGAYL--DQRENRLYM-E---RFRGERALDVFSYAGGFALHLA-LGFREVVAVD 174 (318)
T ss_dssp EEEEEETTEEEEEECST------TSCCCCCG--GGHHHHHHG-G---GCCEEEEEEETCTTTHHHHHHH-HHEEEEEEEE
T ss_pred eEEEEECCEEEEEechh------ccccccch--hhhhhHHHH-H---HhCCCeeeccCCCCcHHHHHHH-hcCCcEEeec
Confidence 45666677777775332 24566321 112222222 2 2378999999999998887654 5677999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC---------CChHHHHHHH
Q 008457 407 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---------EAILPLFATA 477 (564)
Q Consensus 407 ~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---------~~~~~l~~~~ 477 (564)
.|+.+++.+++|+..|++. .+++...|..+. ...+ .....+||+|+.....+.. ..+..++..+
T Consensus 175 ~s~~al~~a~~n~~~ngl~----~~~~i~~d~~~~--~~~~-~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a 247 (318)
T d1wxxa2 175 SSAEALRRAEENARLNGLG----NVRVLEANAFDL--LRRL-EKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRA 247 (318)
T ss_dssp SCHHHHHHHHHHHHHTTCT----TEEEEESCHHHH--HHHH-HHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCC----CcceeeccHHHH--hhhh-HhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999973 455554443211 1111 2245689999865433321 1345678888
Q ss_pred HHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHH----HHcCCeEEEEc
Q 008457 478 KELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGFRLVDKW 525 (564)
Q Consensus 478 ~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~----~~~g~~~~~~~ 525 (564)
.++| +|+| .++++......+...|.+.+ ...|-++..+.
T Consensus 248 ~~lL-kpGG--------~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~ 290 (318)
T d1wxxa2 248 IKLL-KEGG--------ILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 290 (318)
T ss_dssp HHTE-EEEE--------EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHc-CCCC--------EEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 8899 9988 88888777777766666544 44565555544
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=3.6e-11 Score=116.65 Aligned_cols=105 Identities=19% Similarity=0.119 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc-ccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-FTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||||||+|.++..+++.+ ..+|+++|.|+.+...++.... ....++.++.+|+... +++..+||+|++
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~G-a~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l----~~~~~~~D~Ivs 108 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV----HLPVEKVDVIIS 108 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS----CCSCSCEEEEEE
T ss_pred CCcCEEEEECCCCCHHHHHHHHcC-CCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh----cCccccceEEEE
Confidence 578999999999999999998884 2589999999988754443322 2346789999998654 346789999999
Q ss_pred cccccCCCh-hHHHHHHHHHHhccCCCeEEEE
Q 008457 153 VFVLSAVSP-EKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 153 ~~vl~~~~~-~~~~~~l~~~~r~LkpgG~lii 183 (564)
..+.+++.. ..+..++....++|||||.++-
T Consensus 109 e~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 109 EWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 877776643 3566778888899999999874
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.3e-11 Score=116.69 Aligned_cols=143 Identities=12% Similarity=0.102 Sum_probs=96.8
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCC------------------------
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFL------------------------ 428 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~------------------------ 428 (564)
...++.+|||+|||+|.++.+.+.....+|+++|+++.+++.+++++.........
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 44588999999999997766667677789999999999999999887643321100
Q ss_pred -Cce-EEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 429 -AKL-ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP----EAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 429 -~~i-~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
..+ .+...|......... .....++||+|+++-|+.+. +.+..+++.+.++| ||+| .+++....
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~-~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~L-kPGG--------~li~~~~~ 200 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGA-GSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLL-RPGG--------HLLLIGAL 200 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCS-SCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE-EEEE--------EEEEEEEE
T ss_pred hhhhhccccccccCCCcccc-CCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHc-CCCC--------EEEEeccc
Confidence 001 111112121111111 12345689999998887553 35788899999999 9988 77665553
Q ss_pred c--------------cCChhHHHHHHHHcCCeEEEEc
Q 008457 503 R--------------QVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 503 r--------------~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
+ ..+.+.+.+.+.++||+++++-
T Consensus 201 ~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 201 EESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp SCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred CCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 2 1355678888999999998753
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=5.5e-11 Score=111.58 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=100.7
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
+.++....++.+|.+|||+|||+|.++..++... ..+|+++|.++++++.+++|+...+.. ..+.+..-|-.
T Consensus 92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~---~~v~~~~~d~~--- 165 (266)
T d1o54a_ 92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI---ERVTIKVRDIS--- 165 (266)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG---GGEEEECCCGG---
T ss_pred HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc---cCcEEEecccc---
Confidence 4555665677899999999999998888887643 469999999999999999999987763 34544322211
Q ss_pred cchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEE
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV 522 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~ 522 (564)
..+....||.|+ .+..+....++.+.++| ||+| .+++..+.- .....+.+.+++.||...
T Consensus 166 -----~~~~~~~~D~V~-----~d~p~p~~~l~~~~~~L-KpGG--------~lv~~~P~~-~Qv~~~~~~l~~~gF~~i 225 (266)
T d1o54a_ 166 -----EGFDEKDVDALF-----LDVPDPWNYIDKCWEAL-KGGG--------RFATVCPTT-NQVQETLKKLQELPFIRI 225 (266)
T ss_dssp -----GCCSCCSEEEEE-----ECCSCGGGTHHHHHHHE-EEEE--------EEEEEESSH-HHHHHHHHHHHHSSEEEE
T ss_pred -----ccccccceeeeE-----ecCCCHHHHHHHHHhhc-CCCC--------EEEEEeCcc-cHHHHHHHHHHHCCceeE
Confidence 123345678765 45667888999999999 9988 554433321 122467888899999999
Q ss_pred EEcCCC
Q 008457 523 DKWPSK 528 (564)
Q Consensus 523 ~~~~~~ 528 (564)
+++++.
T Consensus 226 ~~~E~l 231 (266)
T d1o54a_ 226 EVWESL 231 (266)
T ss_dssp EEECCC
T ss_pred EEEEEE
Confidence 988763
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.19 E-value=2.1e-10 Score=103.73 Aligned_cols=153 Identities=17% Similarity=0.201 Sum_probs=100.8
Q ss_pred cceechhHH-HHHHHHhc--CCCCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCC
Q 008457 354 GLMLWESAH-LMAAVLAR--NPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLA 429 (564)
Q Consensus 354 G~~~W~~~~-~l~~~l~~--~~~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~ 429 (564)
|...|+.-+ .||..++. ...+.+|.+|||||||+|..+..++.. +..+|+++|+++.+++.+++++...+
T Consensus 31 ~~r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~------ 104 (209)
T d1nt2a_ 31 GYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN------ 104 (209)
T ss_dssp TEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS------
T ss_pred ceeeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC------
Confidence 467887544 45655554 345668999999999999888777765 34599999999999999999877642
Q ss_pred ceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC---
Q 008457 430 KLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD--- 506 (564)
Q Consensus 430 ~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~--- 506 (564)
++.....+.... ... ......+|+|+ .| +.+......+++.+.++| +|+| .++++...+..+
T Consensus 105 ni~~i~~d~~~~---~~~-~~~~~~vd~v~-~~-~~~~~~~~~~l~~~~~~L-kpgG--------~l~i~~~~~~~d~~~ 169 (209)
T d1nt2a_ 105 NIIPLLFDASKP---WKY-SGIVEKVDLIY-QD-IAQKNQIEILKANAEFFL-KEKG--------EVVIMVKARSIDSTA 169 (209)
T ss_dssp SEEEECSCTTCG---GGT-TTTCCCEEEEE-EC-CCSTTHHHHHHHHHHHHE-EEEE--------EEEEEEEHHHHCTTS
T ss_pred CceEEEeeccCc---ccc-ccccceEEEEE-ec-ccChhhHHHHHHHHHHHh-ccCC--------eEEEEEEccccCCCC
Confidence 344444433322 111 11122444443 33 566777889999999999 9988 787776654322
Q ss_pred -hhHHHHHH---HHcCCeEEEEcCC
Q 008457 507 -EPSMLSAA---TQCGFRLVDKWPS 527 (564)
Q Consensus 507 -~~~~~~~~---~~~g~~~~~~~~~ 527 (564)
....++.. .+.||++.+....
T Consensus 170 ~~~~~~~~~~~~l~~gf~i~E~i~L 194 (209)
T d1nt2a_ 170 EPEEVFKSVLKEMEGDFKIVKHGSL 194 (209)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCEEEEEEcc
Confidence 12222221 2479999887643
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.18 E-value=3.4e-11 Score=116.95 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=97.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh--hhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK--EENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~--~~~~~ 453 (564)
++.+|||+|||+|+++..++..++++|+++|+++.+++.+++|+..|++. .++.+..-|. .+.+. .....
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~---~~~~~~~~d~-----~~~~~~~~~~~~ 216 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE---DRMKFIVGSA-----FEEMEKLQKKGE 216 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCH-----HHHHHHHHHTTC
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCC---ccceeeechh-----hhhhHHHHhccC
Confidence 68999999999999998888888889999999999999999999999985 4555544332 22221 12456
Q ss_pred CccEEEEeceeeCCC----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHH----HcCC
Q 008457 454 GFEVILGTDVSYIPE----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAAT----QCGF 519 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~----------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----~~g~ 519 (564)
+||+|+. |+.+... .+..|+..+.++| +|+| .++++......+.+.|.+.+. +.|-
T Consensus 217 ~fD~Vi~-DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll-~pGG--------~lv~~s~s~~~~~~~f~~~v~~a~~~~gr 286 (324)
T d2as0a2 217 KFDIVVL-DPPAFVQHEKDLKAGLRAYFNVNFAGLNLV-KDGG--------ILVTCSCSQHVDLQMFKDMIIAAGAKAGK 286 (324)
T ss_dssp CEEEEEE-CCCCSCSSGGGHHHHHHHHHHHHHHHHTTE-EEEE--------EEEEEECCTTSCHHHHHHHHHHHHHHTTE
T ss_pred CCCchhc-CCccccCCHHHHHHHHHHHHHHHHHHHHHc-CCCc--------EEEEEeCCccCCHHHHHHHHHHHHHHcCC
Confidence 8999984 5554432 3566788888899 9988 888888788777777776653 4565
Q ss_pred eEEEE
Q 008457 520 RLVDK 524 (564)
Q Consensus 520 ~~~~~ 524 (564)
++.-+
T Consensus 287 ~~~~~ 291 (324)
T d2as0a2 287 FLKML 291 (324)
T ss_dssp EEEES
T ss_pred eEEEe
Confidence 55544
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.17 E-value=8.4e-11 Score=112.16 Aligned_cols=114 Identities=10% Similarity=0.042 Sum_probs=87.5
Q ss_pred HHHHhcC-CCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 365 AAVLARN-PTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 365 ~~~l~~~-~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
..++... ..+.++.+|||+|||+|.++..++... +.+|+++|+|+.+++.+++|+...+. ++.+...|..+.
T Consensus 15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-----~~~f~~~d~~~~ 89 (281)
T d2gh1a1 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-----DSEFLEGDATEI 89 (281)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-----EEEEEESCTTTC
T ss_pred HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-----cccccccccccc
Confidence 3455443 345577899999999997777776643 46899999999999999999887553 355555444322
Q ss_pred ccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 442 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 442 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
++ +++||+|++..++++..+...+++.+.++| +|+| .+++..
T Consensus 90 -------~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L-kpgG--------~lii~~ 131 (281)
T d2gh1a1 90 -------EL-NDKYDIAICHAFLLHMTTPETMLQKMIHSV-KKGG--------KIICFE 131 (281)
T ss_dssp -------CC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTE-EEEE--------EEEEEE
T ss_pred -------cc-cCCceEEEEehhhhcCCCHHHHHHHHHHHc-CcCc--------EEEEEE
Confidence 12 358999999999999999999999999999 9988 666654
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=6.8e-11 Score=112.98 Aligned_cols=134 Identities=10% Similarity=0.154 Sum_probs=92.4
Q ss_pred CCCeEEEeCCcccHHHHHHHhc----C---CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc----
Q 008457 376 AGKKVLELGCGCGGICSMVAAG----S---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI---- 444 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~----~---~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~---- 444 (564)
++.+|||+|||+|.++..++.. . ..+++++|+|+.+++.+++++...... ..+ .++|......
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~---~~~---~~~~~~~~~~~~~~ 113 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL---ENV---KFAWHKETSSEYQS 113 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC---TTE---EEEEECSCHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc---ccc---cccchhhhhhhhcc
Confidence 3348999999999776655432 1 236899999999999999987653321 233 3344332211
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------------
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------- 503 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--------------------- 503 (564)
.......+++||+|++..++++..++..+++.+.++| +|+| .+++.....
T Consensus 114 ~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~L-kpgG--------~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 184 (280)
T d1jqea_ 114 RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLL-GTNA--------KMLIIVVSGSSGWDKLWKKYGSRFPQDDLC 184 (280)
T ss_dssp HHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTE-EEEE--------EEEEEEECTTSHHHHHHHHHGGGSCCCTTS
T ss_pred hhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhC-CCCC--------EEEEEEecCcchHHHHHHHHHHhcCCCccc
Confidence 1112345789999999999999999999999999999 9988 666654421
Q ss_pred -cCChhHHHHHHHHcCCeEEEE
Q 008457 504 -QVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 504 -~~~~~~~~~~~~~~g~~~~~~ 524 (564)
......+.+.+.+.||.+...
T Consensus 185 ~~~~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 185 QYITSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp CCCCHHHHHHHHHHHTCCEEEE
T ss_pred ccCCHHHHHHHHHHCCCceEEE
Confidence 112235667778889976543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=2.9e-11 Score=117.51 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc--ccCCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD--FTETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||||||+|.++..+++.+ ..+|+|+|.|+.+ ..+++... ....++.++++|+... +++.++||+|+
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~----~~~~~~~D~iv 105 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEV----ELPVEKVDIII 105 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTC----CCSSSCEEEEE
T ss_pred CCcCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHc----ccccceeEEEe
Confidence 468899999999999999888873 3589999999865 44444322 2346799999998654 34678999999
Q ss_pred EcccccCCC-hhHHHHHHHHHHhccCCCeEEEE
Q 008457 152 MVFVLSAVS-PEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 152 ~~~vl~~~~-~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+..+.+++. ...+..++..+.++|||||.++-
T Consensus 106 s~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 106 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 987766654 34678899999999999999874
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.17 E-value=3.9e-11 Score=118.52 Aligned_cols=119 Identities=10% Similarity=0.120 Sum_probs=84.3
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc----------CCCeeE-EEe
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT----------ETRVST-FVC 131 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~----------~~~i~~-~~~ 131 (564)
+...+.+.+...++.+|||||||+|..+..++..++..+++|||+|+.+++.|+++.... .....+ ..+
T Consensus 204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 445566667778999999999999999999998876668999999999999998765321 122222 122
Q ss_pred cCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 132 DLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 132 d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++...... ...-..+|+|+++. ++|. .++...|.++.+.|||||+++..+
T Consensus 284 ~f~~~~~~-d~~~~~adVV~inn-~~f~--~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 284 SFVDNNRV-AELIPQCDVILVNN-FLFD--EDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CSTTCHHH-HHHGGGCSEEEECC-TTCC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred chhhcccc-ccccccceEEEEec-ccCc--hHHHHHHHHHHHhcCCCcEEEEec
Confidence 22211100 00113568888765 3455 578899999999999999998754
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=3.9e-11 Score=106.43 Aligned_cols=100 Identities=8% Similarity=0.089 Sum_probs=79.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..+.+||||+||+|.++..++++++.+|+++|.|+.+++.+++|++.++. ..+.+..-| .+..+ .....+
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~----~~~~ii~~d-----~~~~l-~~~~~~ 111 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA----GNARVVNSN-----AMSFL-AQKGTP 111 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC----CSEEEECSC-----HHHHH-SSCCCC
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc----cceeeeeec-----ccccc-cccccc
Confidence 47889999999999999999999999999999999999999999998765 344443222 22222 224568
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHH--HhhccCC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKE--LTASSNK 486 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~--ll~~~~g 486 (564)
||+|+ .|+.|.....+.++..+.. +| +++|
T Consensus 112 fDlIf-~DPPY~~~~~~~~l~~l~~~~~L-~~~~ 143 (183)
T d2fpoa1 112 HNIVF-VDPPFRRGLLEETINLLEDNGWL-ADEA 143 (183)
T ss_dssp EEEEE-ECCSSSTTTHHHHHHHHHHTTCE-EEEE
T ss_pred cCEEE-EcCccccchHHHHHHHHHHCCCC-CCCe
Confidence 99887 6888999999999998877 57 7765
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.14 E-value=1.5e-10 Score=108.20 Aligned_cols=127 Identities=12% Similarity=0.131 Sum_probs=91.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
.+|.+|||+|||+|.++..++..++++|+++|+||.+++.+++|+..|++. +++.+...|..+. ...+.
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~---~~v~~~~~D~~~~--------~~~~~ 174 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE---DRMSAYNMDNRDF--------PGENI 174 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT---TTEEEECSCTTTC--------CCCSC
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCC---ceEEEEEcchHHh--------ccCCC
Confidence 378899999999999999888887789999999999999999999999985 5677776654322 13457
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--ccCC---hhHHHHHHHHcCCeEEEEc
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF--RQVD---EPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~--r~~~---~~~~~~~~~~~g~~~~~~~ 525 (564)
||.|++.++.+. ..++..+.++| +++| .+.+-... .... ...+.+.+...|+.+..+.
T Consensus 175 ~D~Ii~~~p~~~----~~~l~~a~~~l-~~gG--------~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~ 237 (260)
T d2frna1 175 ADRILMGYVVRT----HEFIPKALSIA-KDGA--------IIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN 237 (260)
T ss_dssp EEEEEECCCSSG----GGGHHHHHHHE-EEEE--------EEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEECCCCch----HHHHHHHHhhc-CCCC--------EEEEEeccccccchhhHHHHHHHHHHHcCCceEEEE
Confidence 999987655433 34566777889 8877 44322111 1111 1234566778899887554
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.14 E-value=7.6e-11 Score=107.56 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=86.0
Q ss_pred hHHHHhhhc--cCCCCCeEEEEcCCccccHHHHHHhC------CCcEEEEEeCChHHHHHHHhcccc------cCCCeeE
Q 008457 63 LDKEWGRYF--SGAGRKDVLEVGCGAGNTIFPLIAAY------PDVFVYACDFSPRAVNLVMTHKDF------TETRVST 128 (564)
Q Consensus 63 ~~~~~~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~~------~~~~v~~iD~s~~~l~~a~~~~~~------~~~~i~~ 128 (564)
+...+.+.+ ...++.+|||||||+|+.+..|++.. ++.+|+++|.++++++.|+++... ...++.+
T Consensus 66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~ 145 (223)
T d1r18a_ 66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 145 (223)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence 334555555 45789999999999999998887752 345899999999999999876432 1358899
Q ss_pred EEecCCcccccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 129 FVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
..+|...... +.++||+|++..++.++|. .+.+.|||||++++..
T Consensus 146 ~~~d~~~~~~----~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 146 VEGDGRKGYP----PNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVPV 190 (223)
T ss_dssp EESCGGGCCG----GGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred Eecccccccc----cccceeeEEEEeechhchH--------HHHHhcCCCcEEEEEE
Confidence 9999864322 4578999999999998862 3678999999998853
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=7.9e-11 Score=114.20 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=79.7
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchh
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
.+.++...+++++|||||||+|.++.+++..++++|+++|.++.+.. +++++..|+.. .++.+...+-.+.
T Consensus 26 ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~---~~i~~~~~~~~~l----- 96 (311)
T d2fyta1 26 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLE---DTITLIKGKIEEV----- 96 (311)
T ss_dssp HHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCT---TTEEEEESCTTTS-----
T ss_pred HHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCC---ccceEEEeeHHHh-----
Confidence 35556667799999999999998888888888889999999987765 55556666654 5677765554332
Q ss_pred hhhhcCCCccEEEEecee---eCCCChHHHHHHHHHHhhccCC
Q 008457 447 IKEENNEGFEVILGTDVS---YIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d~~---y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.++..+||+|++.-+. .+...++.++....++| +|+|
T Consensus 97 --~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~L-kp~G 136 (311)
T d2fyta1 97 --HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYL-AKGG 136 (311)
T ss_dssp --CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHE-EEEE
T ss_pred --cCccccceEEEEeeeeeecccccccHHHHHHHHhcC-CCCc
Confidence 2345799999964322 23446778888889999 9987
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.12 E-value=1.1e-10 Score=103.20 Aligned_cols=105 Identities=20% Similarity=0.378 Sum_probs=82.2
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++.+||||+||+|.++..++.+++.+|+++|.++.+++.+++|++.++.. .++.+...|..+. ++.+ .....
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~---~~~~i~~~D~~~~--l~~~-~~~~~ 112 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP---EKFEVRKMDANRA--LEQF-YEEKL 112 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHHHH--HHHH-HHTTC
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcc---cccccccccchhh--hhhh-cccCC
Confidence 3589999999999999999999999999999999999999999999988764 4566665443211 1111 11345
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHH--HhhccCC
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKE--LTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~--ll~~~~g 486 (564)
+||+|+ .|+.|.......++..+.. +| +++|
T Consensus 113 ~fDlIf-lDPPY~~~~~~~~l~~i~~~~~L-~~~g 145 (182)
T d2fhpa1 113 QFDLVL-LDPPYAKQEIVSQLEKMLERQLL-TNEA 145 (182)
T ss_dssp CEEEEE-ECCCGGGCCHHHHHHHHHHTTCE-EEEE
T ss_pred CcceEE-echhhhhhHHHHHHHHHHHCCCC-CCCE
Confidence 899876 7889999889999888865 68 8766
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.4e-11 Score=112.30 Aligned_cols=115 Identities=19% Similarity=0.205 Sum_probs=80.9
Q ss_pred eechhHH--HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEE
Q 008457 356 MLWESAH--LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 433 (564)
Q Consensus 356 ~~W~~~~--~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~ 433 (564)
..|...+ .+++.+. .+|.+|||||||+|..+..++...+++|+++|+|+.+++.++++..... ..+..
T Consensus 36 ~~w~~~~~~~la~~~~-----~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~-----~~~~~ 105 (229)
T d1zx0a1 36 ERWETPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-----HKVIP 105 (229)
T ss_dssp EGGGHHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-----SEEEE
T ss_pred HHHHHHHHHHHHHhhc-----cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc-----ccccc
Confidence 3476543 3555543 2678999999999977777776666799999999999999999876643 23444
Q ss_pred EEeecCCCccchhhhhhcCCCccEEEE-----eceeeCCCChHHHHHHHHHHhhccCC
Q 008457 434 KRLEWGNRDHIEAIKEENNEGFEVILG-----TDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 434 ~~l~w~~~~~~~~~~~~~~~~fD~Ii~-----~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
...++. .....++.++||.|+. ...+.+..+.+.+++.+.++| +|+|
T Consensus 106 ~~~~~~-----~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~L-kpGG 157 (229)
T d1zx0a1 106 LKGLWE-----DVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLL-KPGG 157 (229)
T ss_dssp EESCHH-----HHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHE-EEEE
T ss_pred cccccc-----ccccccccccccceeecccccccccccccCHHHHHHHHHHHc-CCCc
Confidence 433332 1122456789998872 233444556788999999999 9988
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.4e-10 Score=107.11 Aligned_cols=148 Identities=12% Similarity=0.024 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCC-------------C
Q 008457 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-------------F 427 (564)
Q Consensus 361 ~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~-------------~ 427 (564)
...|.+++.......++.+|||+|||+|..+..++..+ .+|+++|+|+.+|+.++++........ .
T Consensus 30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G-~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (229)
T d2bzga1 30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRG-HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS 108 (229)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTT-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence 45566776654445588899999999998888877765 589999999999999988755432100 0
Q ss_pred CCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecc-
Q 008457 428 LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ- 504 (564)
Q Consensus 428 ~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~- 504 (564)
...+.+..-|+. .+.....+.||+|+.+-++.+ ++..+..++.+.++| +|+| .+++....+.
T Consensus 109 ~~~v~~~~~d~~------~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~L-kpgG--------~~~l~~~~~~~ 173 (229)
T d2bzga1 109 SGNISLYCCSIF------DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLL-GKKF--------QYLLCVLSYDP 173 (229)
T ss_dssp TSSEEEEESCGG------GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTE-EEEE--------EEEEEEEECCT
T ss_pred CCcEEEEEcchh------hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhc-CCcc--------eEEEEEcccCC
Confidence 122333333321 222345678999998877665 467889999999999 9988 6666555432
Q ss_pred ---------CChhHHHHHHHHcCCeEEEEc
Q 008457 505 ---------VDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 505 ---------~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+..++.+.+ +.+|.++.+-
T Consensus 174 ~~~~gpp~~~~~~el~~lf-~~~~~i~~le 202 (229)
T d2bzga1 174 TKHPGPPFYVPHAEIERLF-GKICNIRCLE 202 (229)
T ss_dssp TTCCCSSCCCCHHHHHHHH-TTTEEEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHh-cCCCEEEEEE
Confidence 1222334443 4577776654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=2.7e-11 Score=116.53 Aligned_cols=112 Identities=15% Similarity=0.229 Sum_probs=80.9
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
.+++|||||||+|.++..++..+ .+|+++|+|+.||+.|+++...++.........+...+|...+ . ......+|
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g-~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~f 130 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD---K-DVPAGDGF 130 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH---H-HSCCTTCE
T ss_pred CCCEEEEecCCCcHHHHHHHHcC-CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccc---c-ccCCCCCc
Confidence 56799999999998888877764 5899999999999999999887665432233445556654221 0 01134689
Q ss_pred cEEEEe-ceeeCC-------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 008457 456 EVILGT-DVSYIP-------EAILPLFATAKELTASSNKSLREDQQPAFILCHI 501 (564)
Q Consensus 456 D~Ii~~-d~~y~~-------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~ 501 (564)
|+|++. +++.+. +....+++.+.++| +|+| .+++.+.
T Consensus 131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG--------~li~~~~ 175 (292)
T d1xvaa_ 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV-RPGG--------LLVIDHR 175 (292)
T ss_dssp EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTE-EEEE--------EEEEEEE
T ss_pred eEEEEecCchhhcCCcccChHHHHHHHHHHHHHc-CcCc--------EEEEeec
Confidence 999865 455442 24677999999999 9988 8888654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.09 E-value=1.9e-10 Score=107.08 Aligned_cols=148 Identities=13% Similarity=0.153 Sum_probs=100.0
Q ss_pred ceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceE
Q 008457 355 LMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 432 (564)
Q Consensus 355 ~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~ 432 (564)
..+++.- +.++....++.+|.+|||+|||+|.++..++.. + ..+|+++|.++++++.+++|+...... ...++.
T Consensus 78 qiiypkD---~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~-~~~nv~ 153 (264)
T d1i9ga_ 78 QVIYPKD---AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-PPDNWR 153 (264)
T ss_dssp CCCCHHH---HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-CCTTEE
T ss_pred cccchHH---HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC-CCceEE
Confidence 3455444 344444456679999999999999888887764 3 459999999999999999999864221 124565
Q ss_pred EEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHH
Q 008457 433 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLS 512 (564)
Q Consensus 433 ~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~ 512 (564)
+..-|-.+. +++++.||.|+. +..+....+..+.++| ||+| .+.+. ...-.....+.+
T Consensus 154 ~~~~d~~~~-------~~~~~~fDaV~l-----dlp~P~~~l~~~~~~L-kpGG--------~lv~~-~P~i~Qv~~~~~ 211 (264)
T d1i9ga_ 154 LVVSDLADS-------ELPDGSVDRAVL-----DMLAPWEVLDAVSRLL-VAGG--------VLMVY-VATVTQLSRIVE 211 (264)
T ss_dssp EECSCGGGC-------CCCTTCEEEEEE-----ESSCGGGGHHHHHHHE-EEEE--------EEEEE-ESSHHHHHHHHH
T ss_pred EEecccccc-------cccCCCcceEEE-----ecCCHHHHHHHHHhcc-CCCC--------EEEEE-eCccChHHHHHH
Confidence 554433221 345679999873 4566778899999999 9987 54433 333222235677
Q ss_pred HHH-HcCCeEEEEcCCC
Q 008457 513 AAT-QCGFRLVDKWPSK 528 (564)
Q Consensus 513 ~~~-~~g~~~~~~~~~~ 528 (564)
.++ +.||.-.+..++.
T Consensus 212 ~l~~~~~f~~i~~~E~l 228 (264)
T d1i9ga_ 212 ALRAKQCWTEPRAWETL 228 (264)
T ss_dssp HHHHHSSBCCCEEECCC
T ss_pred HHHHcCCeecceEEEEE
Confidence 775 4578766676653
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.08 E-value=1.1e-09 Score=99.85 Aligned_cols=153 Identities=17% Similarity=0.162 Sum_probs=103.6
Q ss_pred cceechhHH-HHHHHHhc---CCCCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCC
Q 008457 354 GLMLWESAH-LMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPF 427 (564)
Q Consensus 354 G~~~W~~~~-~l~~~l~~---~~~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~ 427 (564)
..+.|+.-+ .||..++. +..+.+|.+|||||||+|..+..++.. ...+|+++|+++.+++.++.+++...
T Consensus 47 e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---- 122 (227)
T d1g8aa_ 47 EYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---- 122 (227)
T ss_dssp EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT----
T ss_pred eEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC----
Confidence 466775432 45666654 445778999999999999888888875 24699999999999999999876532
Q ss_pred CCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-
Q 008457 428 LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD- 506 (564)
Q Consensus 428 ~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~- 506 (564)
.+.....+-.. .... ......+|+|+. | +.++.....+++.+.+.| +|+| .++++...+...
T Consensus 123 --~~~~i~~d~~~---~~~~-~~~~~~vD~i~~-d-~~~~~~~~~~l~~~~~~L-kpgG--------~lvi~~ka~~~~~ 185 (227)
T d1g8aa_ 123 --NIVPILGDATK---PEEY-RALVPKVDVIFE-D-VAQPTQAKILIDNAEVYL-KRGG--------YGMIAVKSRSIDV 185 (227)
T ss_dssp --TEEEEECCTTC---GGGG-TTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHE-EEEE--------EEEEEEEGGGTCT
T ss_pred --CceEEEEECCC---cccc-cccccceEEEEE-E-ccccchHHHHHHHHHHhc-ccCC--------eEEEEEECCccCC
Confidence 23333332221 2221 223457887763 4 456677888999999999 9988 888877655332
Q ss_pred ---hhHH---HHHHHHcCCeEEEEcCC
Q 008457 507 ---EPSM---LSAATQCGFRLVDKWPS 527 (564)
Q Consensus 507 ---~~~~---~~~~~~~g~~~~~~~~~ 527 (564)
.... .+.+.+.||++.+..+.
T Consensus 186 ~~~~~~v~~~v~~l~~~gf~iie~i~L 212 (227)
T d1g8aa_ 186 TKEPEQVFREVERELSEYFEVIERLNL 212 (227)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEEcC
Confidence 1222 34455679999887643
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.07 E-value=9.9e-10 Score=104.10 Aligned_cols=169 Identities=15% Similarity=0.081 Sum_probs=106.0
Q ss_pred eEEEEEeCCceEEEEEecccccccCCCccceechhHH----HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCE
Q 008457 326 EMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAH----LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADL 401 (564)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~~~----~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~ 401 (564)
+...+...|..+.|..... ..+|.. .... .+.+.+.. ..++++||||+||||+++..++..+ ++
T Consensus 89 ~~~~v~e~gl~f~v~~~~~------~~tG~f--~dqr~nr~~~~~~~~~---~~~~~rVLdlf~~tG~~sl~aa~~G-A~ 156 (309)
T d2igta1 89 ETWPLSLLGVEFLGRFTAF------RHVGVF--PEQIVHWEWLKNAVET---ADRPLKVLNLFGYTGVASLVAAAAG-AE 156 (309)
T ss_dssp SEEEEEETTEEEEEECCSS------SCCSCC--GGGHHHHHHHHHHHHH---SSSCCEEEEETCTTCHHHHHHHHTT-CE
T ss_pred CeEEEEEeEEEEEEeccCC------Cccccc--cchhHHHHHHHHHHhh---ccCCCeEEEecCCCcHHHHHHHhCC-Ce
Confidence 3556777888877764333 456632 1111 12333332 2368899999999998888776655 48
Q ss_pred EEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh--hcCCCccEEEEeceeeC----------CCC
Q 008457 402 VVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE--ENNEGFEVILGTDVSYI----------PEA 469 (564)
Q Consensus 402 v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~--~~~~~fD~Ii~~d~~y~----------~~~ 469 (564)
|+++|.|+.+++.+++|++.|++.. .++++..- +.++.+.. ....+||+||.-..-|. ...
T Consensus 157 V~~VD~s~~al~~a~~N~~ln~~~~--~~~~~i~~-----D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~ 229 (309)
T d2igta1 157 VTHVDASKKAIGWAKENQVLAGLEQ--APIRWICE-----DAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDH 229 (309)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCTT--SCEEEECS-----CHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHH
T ss_pred EEEEeChHHHHHHHHHhhhhhcccC--CcEEEEeC-----CHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHH
Confidence 9999999999999999999999853 34555433 23322221 23568999996444342 124
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCCcEEEEE-EeeccCChhHHHHHH----HHcCCeEE
Q 008457 470 ILPLFATAKELTASSNKSLREDQQPAFILC-HIFRQVDEPSMLSAA----TQCGFRLV 522 (564)
Q Consensus 470 ~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~-~~~r~~~~~~~~~~~----~~~g~~~~ 522 (564)
+..|++.+..+| +|+| .++++ ......+...+.+.+ ...|-.++
T Consensus 230 ~~~l~~~~~~ll-~~~g--------~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 230 LPLMLDICREIL-SPKA--------LGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 278 (309)
T ss_dssp HHHHHHHHHHTB-CTTC--------CEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred HHHHHHHHHHhc-CCCC--------CEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence 677888899999 8876 43333 333344443444433 34565554
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.05 E-value=4.7e-10 Score=104.82 Aligned_cols=130 Identities=17% Similarity=0.222 Sum_probs=96.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++..+++.+ .++|+++|+++.+++.++++....+ .+++++++|+... .+.+.||.|+
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~-----~~~~~~D~Ii 179 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-----PGENIADRIL 179 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC-----CCCSCEEEEE
T ss_pred CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHh-----ccCCCCCEEE
Confidence 689999999999999999999874 5699999999999999998875433 5689999998643 2457899998
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhC
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKEN 231 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 231 (564)
++..- ....++..+.+.|+|||++.+......... .....+.+.++....
T Consensus 180 ~~~p~------~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~------------------------~~~~~e~~~~~~~~~ 229 (260)
T d2frna1 180 MGYVV------RTHEFIPKALSIAKDGAIIHYHNTVPEKLM------------------------PREPFETFKRITKEY 229 (260)
T ss_dssp ECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT------------------------TTTTHHHHHHHHHHT
T ss_pred ECCCC------chHHHHHHHHhhcCCCCEEEEEeccccccc------------------------hhhHHHHHHHHHHHc
Confidence 75321 123478888999999999876543211100 011356677888899
Q ss_pred CCcEEEee
Q 008457 232 GFDVEELG 239 (564)
Q Consensus 232 Gf~~~~~~ 239 (564)
||.+....
T Consensus 230 g~~v~~~~ 237 (260)
T d2frna1 230 GYDVEKLN 237 (260)
T ss_dssp TCEEEEEE
T ss_pred CCceEEEE
Confidence 99876443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.03 E-value=3.6e-10 Score=109.61 Aligned_cols=111 Identities=18% Similarity=0.050 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|+++....+ .++++.++|+.......+....+||+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 578999999999999999988874 3489999999999999999876544 4688999997543211122457899999
Q ss_pred EcccccCCC-------hhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 152 MVFVLSAVS-------PEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 152 ~~~vl~~~~-------~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+.--....+ ..+...++..+.++|+|||.|++++
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 263 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 944322111 1234567888899999999999875
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.02 E-value=3.5e-10 Score=100.41 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=55.9
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
..++|++|||||||+|.++..++..++++|+++|+++.+++.+++|+.. +.+..-|..+ .+
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~---------~~~~~~D~~~----------l~ 105 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG---------VNFMVADVSE----------IS 105 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT---------SEEEECCGGG----------CC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc---------ccEEEEehhh----------cC
Confidence 3458999999999999888777777888999999999999999999642 3344333321 24
Q ss_pred CCccEEEEeceeeC
Q 008457 453 EGFEVILGTDVSYI 466 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~ 466 (564)
++||+|+++ +.|.
T Consensus 106 ~~fD~Vi~N-PPfg 118 (197)
T d1ne2a_ 106 GKYDTWIMN-PPFG 118 (197)
T ss_dssp CCEEEEEEC-CCC-
T ss_pred CcceEEEeC-cccc
Confidence 689999865 4454
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.02 E-value=1e-09 Score=102.45 Aligned_cols=98 Identities=21% Similarity=0.209 Sum_probs=73.5
Q ss_pred eechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE
Q 008457 356 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435 (564)
Q Consensus 356 ~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~ 435 (564)
..=+.+..|.+++..........+|+|+|||+|.+++.++.....+|+++|+|+++++.+++|+..|+.. .++.+..
T Consensus 90 IPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~---~~~~i~~ 166 (271)
T d1nv8a_ 90 VPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS---DRFFVRK 166 (271)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT---TSEEEEE
T ss_pred CchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCC---ceeEEee
Confidence 3445556677776653322345689999999998887777666779999999999999999999999885 5677877
Q ss_pred eecCCCccchhhhhhcCCCccEEEEec
Q 008457 436 LEWGNRDHIEAIKEENNEGFEVILGTD 462 (564)
Q Consensus 436 l~w~~~~~~~~~~~~~~~~fD~Ii~~d 462 (564)
-+|.+.. ....++||+|+++.
T Consensus 167 ~~~~~~~------~~~~~~fDlIVsNP 187 (271)
T d1nv8a_ 167 GEFLEPF------KEKFASIEMILSNP 187 (271)
T ss_dssp SSTTGGG------GGGTTTCCEEEECC
T ss_pred ccccccc------ccccCcccEEEEcc
Confidence 7776431 12346899999774
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.01 E-value=1.2e-09 Score=105.47 Aligned_cols=111 Identities=17% Similarity=0.026 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|||++||+|.++..++.. +.+|+++|+|+.+++.|+++....+ .++++++.|+.+..-......++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 57899999999999999998865 6799999999999999999876555 57899999875421111224578999999
Q ss_pred cccccCCC-------hhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 153 VFVLSAVS-------PEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 153 ~~vl~~~~-------~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.---...+ ......++..+.++|+|||.|++.+-
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 54211111 13345688899999999999988643
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.00 E-value=6.5e-10 Score=98.38 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=83.7
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh-hhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~-~~~~~ 453 (564)
..+.+||||.||||.++..++.+++++|+++|.+..+++.+++|++..+... ....+...+ ....+. .....
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~--~~~~~~~~d-----~~~~l~~~~~~~ 114 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSS--EQAEVINQS-----SLDFLKQPQNQP 114 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCT--TTEEEECSC-----HHHHTTSCCSSC
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccc--ccccccccc-----ccccccccccCC
Confidence 3778999999999999999999999999999999999999999999876532 233333222 111111 12245
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHH--HhhccCCCCCCCCCcEEEEEEeec
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKE--LTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~--ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
+||+|+ .|+.|.....+.++..+.. +| +++| .+++-+..+
T Consensus 115 ~fDlIF-lDPPY~~~~~~~~l~~l~~~~~L-~~~~--------liiiE~~~~ 156 (183)
T d2ifta1 115 HFDVVF-LDPPFHFNLAEQAISLLCENNWL-KPNA--------LIYVETEKD 156 (183)
T ss_dssp CEEEEE-ECCCSSSCHHHHHHHHHHHTTCE-EEEE--------EEEEEEESS
T ss_pred cccEEE-echhHhhhhHHHHHHHHHHhCCc-CCCc--------EEEEEecCC
Confidence 799875 7999999989999998876 68 7765 666654433
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.97 E-value=2.4e-10 Score=102.86 Aligned_cols=142 Identities=9% Similarity=-0.015 Sum_probs=92.1
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCC--------CCceEEEEeecCCCccc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF--------LAKLITKRLEWGNRDHI 444 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~--------~~~i~~~~l~w~~~~~~ 444 (564)
.+.++.+|||+|||+|..+..++.++ .+|+++|+|+.+++.+++++........ ...+.+..-++...
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l--- 92 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL--- 92 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS---
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcC-CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccc---
Confidence 35589999999999998888888765 5899999999999999998754322100 01122333333221
Q ss_pred hhhhhhcCCCccEEEEeceeeCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC---------hhHHHHH
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD---------EPSMLSA 513 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~---------~~~~~~~ 513 (564)
.......||+|+++.++.+.. ....+++.+.++| +|+| .+++....+... ....+..
T Consensus 93 ---~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~L-kpgG--------~l~l~~~~~~~~~~~~p~~~~~~~el~~ 160 (201)
T d1pjza_ 93 ---TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALM-PQAC--------SGLLITLEYDQALLEGPPFSVPQTWLHR 160 (201)
T ss_dssp ---THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHS-CSEE--------EEEEEEESSCSSSSSSCCCCCCHHHHHH
T ss_pred ---ccccccceeEEEEEeeeEecchhhhHHHHHHHHHhc-CCCc--------EEEEEEcccccccCCCccccCCHHHHHH
Confidence 112335899999988877643 5788999999999 9988 666554432111 1122333
Q ss_pred HHHcCCeEEEEcCCCCC
Q 008457 514 ATQCGFRLVDKWPSKNS 530 (564)
Q Consensus 514 ~~~~g~~~~~~~~~~~~ 530 (564)
+-..++.+..+......
T Consensus 161 l~~~~~~i~~~~~~~~~ 177 (201)
T d1pjza_ 161 VMSGNWEVTKVGGQDTL 177 (201)
T ss_dssp TSCSSEEEEEEEESSCT
T ss_pred HhCCCcEEEEEEEeccc
Confidence 33467887766544333
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.97 E-value=1.2e-08 Score=91.41 Aligned_cols=129 Identities=11% Similarity=0.017 Sum_probs=88.1
Q ss_pred CCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 377 GKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
+..|||||||+|.....+|... ...++++|+++.++..+.+++..+++ .++.+...|-. .+ ...++++.+
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l----~Nv~~~~~Da~---~l--~~~~~~~~~ 100 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA----QNVKLLNIDAD---TL--TDVFEPGEV 100 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC----SSEEEECCCGG---GH--HHHCCTTSC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc----cCchhcccchh---hh--hcccCchhh
Confidence 4579999999997777777664 56999999999999999999998876 45666544321 11 123577899
Q ss_pred cEEEEeceeeCCCC--------hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEE
Q 008457 456 EVILGTDVSYIPEA--------ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK 524 (564)
Q Consensus 456 D~Ii~~d~~y~~~~--------~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 524 (564)
|.|...-+.-++.. -+.+++.+.++| +|+| .+++++-..... ....+.+.+.++.....
T Consensus 101 d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~L-kpgG--------~l~i~TD~~~y~-~~~~~~~~~~~~~~~~~ 167 (204)
T d2fcaa1 101 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVM-GKGG--------SIHFKTDNRGLF-EYSLKSFSEYGLLLTYV 167 (204)
T ss_dssp CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHH-TTSC--------EEEEEESCHHHH-HHHHHHHHHHTCEEEEE
T ss_pred hccccccccccchhhhcchhhhHHHHHHHHHHhC-CCCc--------EEEEEECChHHH-HHHHHHHHHCCCccccC
Confidence 98875433322221 268999999999 9998 887764222211 13345555667665544
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.97 E-value=1e-09 Score=99.61 Aligned_cols=104 Identities=18% Similarity=0.096 Sum_probs=73.1
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD 442 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~ 442 (564)
...+++...+.++.+|||||||+|.++..++... ..+|+++|.++++++.+++|+...+. .++.+.. ++..
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~----~n~~~~~---~d~~ 136 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI----ENVIFVC---GDGY 136 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC----CSEEEEE---SCGG
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc----ccccccc---CchH
Confidence 3334445567789999999999997777776542 45899999999999999999998776 3444432 2211
Q ss_pred cchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 443 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 443 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
. . ....++||+|++...+.+. . +.+.+.| +|+|
T Consensus 137 ~--~--~~~~~~fD~I~~~~~~~~~--p----~~l~~~L-kpGG 169 (213)
T d1dl5a1 137 Y--G--VPEFSPYDVIFVTVGVDEV--P----ETWFTQL-KEGG 169 (213)
T ss_dssp G--C--CGGGCCEEEEEECSBBSCC--C----HHHHHHE-EEEE
T ss_pred H--c--cccccchhhhhhhccHHHh--H----HHHHHhc-CCCc
Confidence 1 0 1234589999987766543 2 3456779 9988
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.7e-09 Score=103.89 Aligned_cols=153 Identities=10% Similarity=0.062 Sum_probs=96.3
Q ss_pred ceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc-C-CCEEEEEcCChhHHHHHHHHHHhcCC-------C
Q 008457 355 LMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLK-------P 425 (564)
Q Consensus 355 ~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~-~-~~~v~~tD~~~~~l~~~~~n~~~n~~-------~ 425 (564)
..+++.- +.++....++.+|.+|||+|||+|.++..++.. + ..+|+++|+++++++.+++|++..+. .
T Consensus 80 qiiypkD---~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~ 156 (324)
T d2b25a1 80 AITFPKD---INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE 156 (324)
T ss_dssp CCCCHHH---HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS
T ss_pred ccccccc---HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 3455543 223333335668999999999999888877764 3 45999999999999999999986421 1
Q ss_pred CCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccC
Q 008457 426 PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV 505 (564)
Q Consensus 426 ~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~ 505 (564)
....++.+..-|..+.. ..+....||.|+. |+ ......+..+.++| ||+| ++++..+.=.
T Consensus 157 ~~~~nv~~~~~di~~~~-----~~~~~~~fD~V~L-D~----p~P~~~l~~~~~~L-KpGG--------~lv~~~P~i~- 216 (324)
T d2b25a1 157 EWPDNVDFIHKDISGAT-----EDIKSLTFDAVAL-DM----LNPHVTLPVFYPHL-KHGG--------VCAVYVVNIT- 216 (324)
T ss_dssp CCCCCEEEEESCTTCCC------------EEEEEE-CS----SSTTTTHHHHGGGE-EEEE--------EEEEEESSHH-
T ss_pred ccccceeEEecchhhcc-----cccCCCCcceEee-cC----cCHHHHHHHHHHhc-cCCC--------EEEEEeCCHH-
Confidence 12245666655544321 1234568998873 44 33445788999999 9987 5444322211
Q ss_pred ChhHHHHHHHH--cCCeEEEEcCCCCC
Q 008457 506 DEPSMLSAATQ--CGFRLVDKWPSKNS 530 (564)
Q Consensus 506 ~~~~~~~~~~~--~g~~~~~~~~~~~~ 530 (564)
-.....+.++. .||..+++.++...
T Consensus 217 Qv~~~~~~l~~~~~~f~~i~~~E~~~R 243 (324)
T d2b25a1 217 QVIELLDGIRTCELALSCEKISEVIVR 243 (324)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCceeeEEEEEEee
Confidence 12356777764 47888888877543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=1.2e-09 Score=99.09 Aligned_cols=113 Identities=13% Similarity=0.144 Sum_probs=83.0
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcc--cccCCCC
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISD--DLSRQIS 143 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~--~~~~~~~ 143 (564)
.++...++.+|||+|||+|..+..+++.. ++.+|+++|.++.+++.|++.....+ .+++++.+|.... .+...+.
T Consensus 50 ~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~ 129 (214)
T d2cl5a1 50 AVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 129 (214)
T ss_dssp HHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSC
T ss_pred HHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccc
Confidence 33344567899999999999999999874 46899999999999999998765433 5799999987542 1111334
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.++||+|++-+.-.. ......+.+..++|||||++++-
T Consensus 130 ~~~~D~ifiD~~~~~---~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 130 VDTLDMVFLDHWKDR---YLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp CCCEEEEEECSCGGG---HHHHHHHHHHTTCEEEEEEEEES
T ss_pred ccccceeeecccccc---cccHHHHHHHhCccCCCcEEEEe
Confidence 578999998532111 12334577788999999988764
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=3.3e-09 Score=100.01 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=71.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.++++. .++.+...|..+. ++.+++
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---------~~~~~~~~d~~~l-------~~~~~s 147 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRL-------PFSDTS 147 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSC-------SBCTTC
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---------ccccceeeehhhc-------cCCCCC
Confidence 67899999999998887777765 459999999999999988752 2344444443322 456789
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
||+|++...+.+ ++.+.++| ||+| .++++.+..
T Consensus 148 fD~v~~~~~~~~-------~~e~~rvL-kpgG--------~l~~~~p~~ 180 (268)
T d1p91a_ 148 MDAIIRIYAPCK-------AEELARVV-KPGG--------WVITATPGP 180 (268)
T ss_dssp EEEEEEESCCCC-------HHHHHHHE-EEEE--------EEEEEEECT
T ss_pred EEEEeecCCHHH-------HHHHHHHh-CCCc--------EEEEEeeCC
Confidence 999997655432 57789999 9988 888776643
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.87 E-value=1.3e-08 Score=91.22 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
...+.+|||+|||+|.++..++..+ ..+|+|+|+++.+++.|+++......+.++.+.|+.. .+++||+|++
T Consensus 44 dl~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~-------~~~~fD~Vi~ 115 (201)
T d1wy7a1 44 DIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-------FNSRVDIVIM 115 (201)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-------CCCCCSEEEE
T ss_pred CCCCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhh-------hCCcCcEEEE
Confidence 3578999999999999998887763 3589999999999999999887777788898888753 2568999999
Q ss_pred ccccc
Q 008457 153 VFVLS 157 (564)
Q Consensus 153 ~~vl~ 157 (564)
+--+.
T Consensus 116 nPP~~ 120 (201)
T d1wy7a1 116 NPPFG 120 (201)
T ss_dssp CCCCS
T ss_pred cCccc
Confidence 76543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.9e-08 Score=91.91 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCccccc--CCCCCCceeE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLS--RQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~--~~~~~~~fD~ 149 (564)
.+..++||+|||+|..+..|+.+.|+.+++|+|+|+.+++.|+++....+ .++.+...+....-+. ....+++||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 45679999999999999999999889999999999999999999876543 5566666554322111 0224568999
Q ss_pred EEEcccccC
Q 008457 150 VTMVFVLSA 158 (564)
Q Consensus 150 V~~~~vl~~ 158 (564)
|+|+=-++.
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 999776553
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.82 E-value=3.8e-08 Score=88.04 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=91.5
Q ss_pred CCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCc
Q 008457 377 GKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF 455 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~f 455 (564)
+..|||||||+|.....+|... ...++++|+++.++..+.+++..+++ .++.+...|.... . ..+++.++
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l----~Ni~~~~~da~~l--~---~~~~~~~~ 102 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV----PNIKLLWVDGSDL--T---DYFEDGEI 102 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC----SSEEEEECCSSCG--G---GTSCTTCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc----ccceeeecCHHHH--h---hhccCCce
Confidence 3479999999998887777765 56899999999999999998888876 4677776664321 1 12467789
Q ss_pred cEEEEeceeeCCC--------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 456 EVILGTDVSYIPE--------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 456 D~Ii~~d~~y~~~--------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
|.|...=+--.+. ..+.+++.+.++| +|+| .+++++-..... ....+.+.+.++.....+..
T Consensus 103 ~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~L-kpgG--------~l~i~TD~~~Y~-~~~le~~~~~~~~~~~~~~~ 172 (204)
T d1yzha1 103 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRIL-PENG--------EIHFKTDNRGLF-EYSLVSFSQYGMKLNGVWLD 172 (204)
T ss_dssp SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHS-CTTC--------EEEEEESCHHHH-HHHHHHHHHHTCEEEEEESS
T ss_pred ehhcccccccccchhhhhhhhhHHHHHHHHHHhC-CCCc--------EEEEEECCccHH-HHHHHHHHHCCccccccccc
Confidence 9887432111111 2378999999999 9988 887764322211 12345556778887776643
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.82 E-value=2.3e-09 Score=93.53 Aligned_cols=108 Identities=11% Similarity=0.050 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
..+.+|||+|||+|.++...+.+ +.+++++|.++.+++.++++....+...++...+.............+||+|++.
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 56889999999999999988887 6789999999999999998876554444444444321111112356789999984
Q ss_pred ccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 154 FVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
=-++.--.+....++. ..+|+|||.+++..
T Consensus 118 PPY~~~~~~~l~~l~~--~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 118 PPYAMDLAALFGELLA--SGLVEAGGLYVLQH 147 (171)
T ss_dssp CCTTSCTTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred cccccCHHHHHHHHHH--cCCcCCCeEEEEEe
Confidence 3222110122222222 36899999988753
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.81 E-value=5.1e-09 Score=100.50 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+.||+|.++..++..+ ..+|+++|+|+.+++.|+++....+ .++++++.|+.+.--...-...+||+|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 578999999999999998877652 3479999999999999998865333 468899999853210001134689999
Q ss_pred EEccc-c----cCC--ChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 151 TMVFV-L----SAV--SPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 151 ~~~~v-l----~~~--~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
++.-- + ... ...+...+++.+.++|+|||+|+++.-
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 98311 0 011 124567789999999999999998653
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=5.2e-09 Score=95.45 Aligned_cols=100 Identities=13% Similarity=0.065 Sum_probs=69.3
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCC-CCCceEEEEeecCCCccchhhhh
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDHIEAIKE 449 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~-~~~~i~~~~l~w~~~~~~~~~~~ 449 (564)
.+.+|.+|||+|||+|..+..++.. ...+|+++|.++++++.+++|+...++.. ....+.+..-|-... .
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~-------~ 145 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG-------Y 145 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC-------C
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc-------c
Confidence 5668999999999999777666654 34599999999999999999998765421 113444443321111 1
Q ss_pred hcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 450 ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 450 ~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.....||+|+....+.+. . +.+.+.| +|+|
T Consensus 146 ~~~~~fD~I~~~~~~~~i--p----~~l~~~L-kpGG 175 (224)
T d1i1na_ 146 AEEAPYDAIHVGAAAPVV--P----QALIDQL-KPGG 175 (224)
T ss_dssp GGGCCEEEEEECSBBSSC--C----HHHHHTE-EEEE
T ss_pred chhhhhhhhhhhcchhhc--C----HHHHhhc-CCCc
Confidence 134589999977665542 2 3567789 9988
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.79 E-value=4e-09 Score=99.82 Aligned_cols=110 Identities=17% Similarity=0.113 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
.++.+|||+.||+|.++..++.. +.+|+++|.|+.+++.|+++....+ .+++|++.|+...--........||+|
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 56889999999999999998877 6799999999999999998865332 468999999854211001134689999
Q ss_pred EEc---cccc----CC-ChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 151 TMV---FVLS----AV-SPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 151 ~~~---~vl~----~~-~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++. +.-. .. -.++...++..+.++|+|||.+++.+
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 983 1111 01 12455677788899999999766654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.78 E-value=5.8e-09 Score=89.18 Aligned_cols=105 Identities=11% Similarity=0.133 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..+.+|||+|||+|.++...+.++. .+|+++|.++.+++.+++.....+ .++++++.|+... + ....++||+|+
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~-l--~~~~~~fDiIf 88 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-I--DCLTGRFDLVF 88 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-H--HHBCSCEEEEE
T ss_pred CCCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc-c--cccccccceeE
Confidence 4689999999999999998887743 499999999999999998765433 5688888887542 1 23567899999
Q ss_pred EcccccCCChhHHHHHHHHHH--hccCCCeEEEEEe
Q 008457 152 MVFVLSAVSPEKMSLVLQNIK--KVLKPTGYVLFRD 185 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~--r~LkpgG~lii~~ 185 (564)
+.--.. .......+..+. ++|+|||.+++..
T Consensus 89 ~DPPy~---~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 89 LDPPYA---KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp ECCSSH---HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred echhhc---cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 843211 133445666554 5799999998853
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.76 E-value=8.1e-09 Score=91.40 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
-.+.+|||+|||+|.++..++..+ ..+|+|+|+++.+++.|+++.. ++.++++|+.. .+++||+|+++
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~g-a~~V~~vDid~~a~~~ar~N~~----~~~~~~~D~~~-------l~~~fD~Vi~N 114 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNCG----GVNFMVADVSE-------ISGKYDTWIMN 114 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGG-------CCCCEEEEEEC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC-CCcccccccCHHHHHHHHHccc----cccEEEEehhh-------cCCcceEEEeC
Confidence 578999999999999988777763 3479999999999999998754 67899999853 24689999997
Q ss_pred cc
Q 008457 154 FV 155 (564)
Q Consensus 154 ~v 155 (564)
=-
T Consensus 115 PP 116 (197)
T d1ne2a_ 115 PP 116 (197)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.74 E-value=1.5e-08 Score=91.87 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=69.9
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
...+++...+.++.+|||+|||+|.++.+++.. +.+|+++|.++++++.+++|.... .++.+..-|-...
T Consensus 59 ~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~------~nv~~~~~d~~~g--- 128 (224)
T d1vbfa_ 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY------NNIKLILGDGTLG--- 128 (224)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC------SSEEEEESCGGGC---
T ss_pred HHHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc------cccccccCchhhc---
Confidence 334555556779999999999999777766654 578999999999999999987642 3455554432111
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
. ...++||.|+..-.+-+ .. ..+.+.| +++|
T Consensus 129 --~--~~~~pfD~Iiv~~a~~~--ip----~~l~~qL-k~GG 159 (224)
T d1vbfa_ 129 --Y--EEEKPYDRVVVWATAPT--LL----CKPYEQL-KEGG 159 (224)
T ss_dssp --C--GGGCCEEEEEESSBBSS--CC----HHHHHTE-EEEE
T ss_pred --c--hhhhhHHHHHhhcchhh--hh----HHHHHhc-CCCC
Confidence 0 12358999997655432 23 3455779 9988
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.6e-08 Score=91.48 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=86.8
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCccc--ccCCCCC
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDD--LSRQISP 144 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~--~~~~~~~ 144 (564)
+......++|||||||+|.-+..+++..+ +.+++++|.+++..+.|++.+... ..++++..+|+...- +......
T Consensus 54 L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~ 133 (219)
T d2avda1 54 LARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA 133 (219)
T ss_dssp HHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred HHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhccc
Confidence 33446789999999999999999998754 789999999999999999887543 367899998864321 1112246
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
++||+|+..+- .+.....+..+.++|+|||.+++-+..
T Consensus 134 ~~fD~ifiD~d-----k~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 134 GTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp TCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred CCccEEEEeCC-----HHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 78999999532 235567888999999999999986543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.72 E-value=1.1e-08 Score=92.20 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=74.3
Q ss_pred HHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchh
Q 008457 367 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 367 ~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
.+++..++.++.+|||+|||||..+.+++...+.+|+++|.++++++.+++|+...+. .++.+..-|....
T Consensus 69 ~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~----~nv~~~~gd~~~g----- 139 (215)
T d1jg1a_ 69 IMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV----KNVHVILGDGSKG----- 139 (215)
T ss_dssp HHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC----CSEEEEESCGGGC-----
T ss_pred HHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC----ceeEEEECccccC-----
Confidence 3444446678999999999999887777765456799999999999999999998776 5666665543322
Q ss_pred hhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 447 IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.....+||.|+....+.. ..+. +...| +++|
T Consensus 140 --~~~~~pfD~Iiv~~a~~~--ip~~----l~~qL-~~gG 170 (215)
T d1jg1a_ 140 --FPPKAPYDVIIVTAGAPK--IPEP----LIEQL-KIGG 170 (215)
T ss_dssp --CGGGCCEEEEEECSBBSS--CCHH----HHHTE-EEEE
T ss_pred --CcccCcceeEEeeccccc--CCHH----HHHhc-CCCC
Confidence 113468999997766643 3344 44568 8887
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.64 E-value=3.8e-08 Score=91.59 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=61.8
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
+.....+..+|+|+|||+|..+..+++ .|+.+|+++|+|+.+++.|+++....+ .++.+...|+.... +...++
T Consensus 104 ~~~~~~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~---~~~~~~ 179 (271)
T d1nv8a_ 104 ELIRKYGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---KEKFAS 179 (271)
T ss_dssp HHHHHHTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---GGGTTT
T ss_pred hhhccccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc---ccccCc
Confidence 333335567999999999999988875 478999999999999999999876544 45667777775321 113478
Q ss_pred eeEEEEc
Q 008457 147 IDIVTMV 153 (564)
Q Consensus 147 fD~V~~~ 153 (564)
||+|++|
T Consensus 180 fDlIVsN 186 (271)
T d1nv8a_ 180 IEMILSN 186 (271)
T ss_dssp CCEEEEC
T ss_pred ccEEEEc
Confidence 9999996
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=2.1e-08 Score=97.18 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=78.7
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCC-----CCCCCceEEEEeec
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLK-----PPFLAKLITKRLEW 438 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~-----~~~~~~i~~~~l~w 438 (564)
.+.+.+...+.++.+|||||||+|.++..++.. ++.+|+++|+++.+++.+++++..... .....++.+...|.
T Consensus 140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~ 219 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 219 (328)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence 333444456668899999999999888777665 456899999999999999887665321 11225677776666
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.+.+..+. + ...|+|+++... +...+...+..+.+.| ||+|
T Consensus 220 ~~~~~~~~---~--~~advi~~~~~~-f~~~~~~~l~e~~r~L-KpGg 260 (328)
T d1nw3a_ 220 LSEEWRER---I--ANTSVIFVNNFA-FGPEVDHQLKERFANM-KEGG 260 (328)
T ss_dssp TSHHHHHH---H--HHCSEEEECCTT-TCHHHHHHHHHHHTTC-CTTC
T ss_pred cccccccc---c--CcceEEEEccee-cchHHHHHHHHHHHhC-CCCc
Confidence 54311111 1 135788865544 4556778888889999 9987
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=3.1e-08 Score=97.44 Aligned_cols=126 Identities=15% Similarity=0.068 Sum_probs=79.4
Q ss_pred CCccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCC-----
Q 008457 351 RSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLK----- 424 (564)
Q Consensus 351 ~~~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~----- 424 (564)
...|-..++-. .-+.+...+.++.+|||||||+|.++..+++. ++++|+++|+++.+++.+++++...+.
T Consensus 195 ~vYGEl~~~~i----~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~ 270 (406)
T d1u2za_ 195 YVYGELLPNFL----SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLY 270 (406)
T ss_dssp GCCCCBCHHHH----HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccCCHHHH----HHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhh
Confidence 34454455442 33334446678999999999999888877765 567999999999999999998875431
Q ss_pred CCCCCceEEEEeecCCCcc-chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 425 PPFLAKLITKRLEWGNRDH-IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 425 ~~~~~~i~~~~l~w~~~~~-~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
....+.+. +....... .... ...-..+|+|+.... .+...+...+..+.+.| ||||
T Consensus 271 g~~~~~~~---~~~~~~f~~~~~~-d~~~~~adVV~inn~-~f~~~l~~~L~ei~r~L-KPGG 327 (406)
T d1u2za_ 271 GMRLNNVE---FSLKKSFVDNNRV-AELIPQCDVILVNNF-LFDEDLNKKVEKILQTA-KVGC 327 (406)
T ss_dssp TBCCCCEE---EEESSCSTTCHHH-HHHGGGCSEEEECCT-TCCHHHHHHHHHHHTTC-CTTC
T ss_pred ccccccce---eeeeechhhcccc-ccccccceEEEEecc-cCchHHHHHHHHHHHhc-CCCc
Confidence 11111222 22111110 1111 111135788886543 34566788889999999 9987
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.57 E-value=5.6e-08 Score=88.18 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=85.7
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCC-CcEEEEEeCChHHHHHHHhcccccC--CCeeEEEecCCcccc---cCCCC
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDL---SRQIS 143 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~~iD~s~~~l~~a~~~~~~~~--~~i~~~~~d~~~~~~---~~~~~ 143 (564)
++...+..+|||||+++|.-+..+++..| +++++.+|.+++..+.|++.+...+ .+++++.+++...-- .....
T Consensus 54 L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~ 133 (227)
T d1susa1 54 LLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKN 133 (227)
T ss_dssp HHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGG
T ss_pred HHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhcccc
Confidence 33346789999999999999999998754 6899999999999999999876443 578998888743210 00112
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.++||+|+.-.- + ......++.+.++|+|||.+++-..
T Consensus 134 ~~~fD~iFiDa~--k---~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 134 HGSYDFIFVDAD--K---DNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp TTCBSEEEECSC--S---TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred CCceeEEEeccc--h---hhhHHHHHHHHhhcCCCcEEEEccC
Confidence 468999999542 1 3466788999999999999998643
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=4.3e-07 Score=80.74 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
.++.+|+|+|+|.|.-+..++-.+|+.+++.+|.+..-+...+.-....+ .++++++..+.... ...+||+|++
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-----~~~~fD~V~s 138 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-----SEPPFDGVIS 138 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-----CCSCEEEEEC
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-----cccccceehh
Confidence 35679999999999999999999999999999999988877776554444 47888888875421 4568999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
..+- .+..++.-+...++++|.+++.
T Consensus 139 RA~~------~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 139 RAFA------SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp SCSS------SHHHHHHHHTTSEEEEEEEEEE
T ss_pred hhhc------CHHHHHHHHHHhcCCCcEEEEE
Confidence 7762 4567888899999999999885
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.50 E-value=8.6e-07 Score=81.38 Aligned_cols=122 Identities=10% Similarity=0.048 Sum_probs=89.3
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.....+|||||||+|.++..++.+.+ -+++..|+ |++++ .... .+++++...|+-+. .+
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~---~~ri~~~~gd~~~~--------~p- 138 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPP---LSGIEHVGGDMFAS--------VP- 138 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCC---CTTEEEEECCTTTC--------CC-
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCC---CCCeEEecCCcccc--------cc-
Confidence 34567999999999988888887765 49999999 66653 2222 36788887776432 22
Q ss_pred CCccEEEEeceeeCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------------------
Q 008457 453 EGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------------- 503 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~--~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r--------------------------- 503 (564)
..|+|+.+.++++..+ ...+++.+.+.| +|+| +++++-...
T Consensus 139 -~~D~~~l~~vLh~~~de~~~~iL~~~~~aL-~pgg--------~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ 208 (244)
T d1fp1d2 139 -QGDAMILKAVCHNWSDEKCIEFLSNCHKAL-SPNG--------KVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGR 208 (244)
T ss_dssp -CEEEEEEESSGGGSCHHHHHHHHHHHHHHE-EEEE--------EEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCC
T ss_pred -cceEEEEehhhhhCCHHHHHHHHHHHHHHc-CCCc--------EEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCc
Confidence 4599999999988754 668899999999 9977 677665421
Q ss_pred cCChhHHHHHHHHcCCeEEEEc
Q 008457 504 QVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
..+..++.+.++++||+.+++.
T Consensus 209 ert~~e~~~ll~~AGF~~v~v~ 230 (244)
T d1fp1d2 209 ERTEKQYEKLSKLSGFSKFQVA 230 (244)
T ss_dssp CEEHHHHHHHHHHTTCSEEEEE
T ss_pred CCCHHHHHHHHHHcCCCceEEE
Confidence 1123456788889999999886
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.48 E-value=1.3e-07 Score=90.13 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=82.2
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc------cCCCeeEEEecCCcccccCCCCCCce
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF------TETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~------~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
..+.+||.||+|.|..+..+++..+..+|+++|+++.+++.|++.+.. ...+++++.+|....-.. .+.+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~---~~~~y 152 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER---TEERY 152 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH---CCCCE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh---cCCcc
Confidence 677899999999999999998876778999999999999999987632 246889999998643211 35689
Q ss_pred eEEEEccc--cc-CCChh--HHHHHHHHHHhccCCCeEEEEE
Q 008457 148 DIVTMVFV--LS-AVSPE--KMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 148 D~V~~~~v--l~-~~~~~--~~~~~l~~~~r~LkpgG~lii~ 184 (564)
|+|++-.. .. ..+.. --..+++.+++.|+|||+++..
T Consensus 153 DvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred cEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 99997432 11 11111 1257999999999999999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.48 E-value=9.4e-08 Score=86.60 Aligned_cols=100 Identities=11% Similarity=0.082 Sum_probs=67.0
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhc----C---CCEEEEEcCChhHHHHHHHHHHhcCCCC-CCCceEEEEeecCCCccc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAG----S---ADLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~----~---~~~v~~tD~~~~~l~~~~~n~~~n~~~~-~~~~i~~~~l~w~~~~~~ 444 (564)
++.++.+|||+|||+|.++..++.. + ..+|+++|.++++++.+++|+..+.... ...++.+..-|-.+.
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~--- 153 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG--- 153 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC---
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccc---
Confidence 5668999999999999777666543 1 2489999999999999999976543210 013455554442211
Q ss_pred hhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
....++||.|+..-.+... . ..+...| +++|
T Consensus 154 ----~~~~~~fD~Iiv~~a~~~~--p----~~l~~~L-k~gG 184 (223)
T d1r18a_ 154 ----YPPNAPYNAIHVGAAAPDT--P----TELINQL-ASGG 184 (223)
T ss_dssp ----CGGGCSEEEEEECSCBSSC--C----HHHHHTE-EEEE
T ss_pred ----cccccceeeEEEEeechhc--h----HHHHHhc-CCCc
Confidence 1134589999876655432 2 3456789 9988
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.47 E-value=2.5e-06 Score=77.20 Aligned_cols=139 Identities=16% Similarity=0.154 Sum_probs=96.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
....+|+|||+|.|.-+..|+-..|+.+++.+|.+..-+...+.-....+ .++.++...+...... .-..++||+|++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~-~~~~~~~D~v~s 147 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-KDVRESYDIVTA 147 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-TTTTTCEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccc-ccccccceEEEE
Confidence 45789999999999999999998999999999999987766665443333 4677777666432111 112468999999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccceeecCCCceeeccCHHHHHHHHHhCC
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENG 232 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 232 (564)
..+ ..+..++.-....+++||.+++.--.... -..++..+.+...|
T Consensus 148 RAv------a~l~~ll~~~~~~l~~~g~~i~~KG~~~~----------------------------~El~~a~~~~~~~~ 193 (239)
T d1xdza_ 148 RAV------ARLSVLSELCLPLVKKNGLFVALKAASAE----------------------------EELNAGKKAITTLG 193 (239)
T ss_dssp ECC------SCHHHHHHHHGGGEEEEEEEEEEECC-CH----------------------------HHHHHHHHHHHHTT
T ss_pred hhh------hCHHHHHHHHhhhcccCCEEEEECCCChH----------------------------HHHHHHHHHHHHcC
Confidence 765 24667889999999999999875211100 01344456778889
Q ss_pred CcEEEeeeeeccccc
Q 008457 233 FDVEELGLCCKQVEN 247 (564)
Q Consensus 233 f~~~~~~~~~~~~~~ 247 (564)
+++..+.....+...
T Consensus 194 ~~~~~v~~~~lp~~~ 208 (239)
T d1xdza_ 194 GELENIHSFKLPIEE 208 (239)
T ss_dssp EEEEEEEEEECTTTC
T ss_pred CEEEEEEEEeCCCCC
Confidence 988776555444433
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.46 E-value=1.6e-06 Score=81.13 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=79.8
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----------cCCCeeEEEecCCcccccCC
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----------TETRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----------~~~~i~~~~~d~~~~~~~~~ 141 (564)
...+.+||.||+|.|..+..+++. +..+|+++|+++.+++.|++.+.. ...+++++.+|....- .
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l-~-- 145 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI-K-- 145 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH-H--
T ss_pred CCCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH-h--
Confidence 367899999999999999888764 557899999999999999976532 2357889999875421 1
Q ss_pred CCCCceeEEEEcccccCCChh--HHHHHHHHHHhccCCCeEEEEEe
Q 008457 142 ISPSSIDIVTMVFVLSAVSPE--KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~--~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.+++||+|++-..-..-+.. .-..+++.+++.|+|||+++...
T Consensus 146 -~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 146 -NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp -HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 24689999984332111111 12579999999999999998753
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.42 E-value=3.8e-07 Score=83.88 Aligned_cols=125 Identities=11% Similarity=0.095 Sum_probs=90.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
...+|||+|||+|.++..++.+.+ .+++..|+ |++++.+ . ...++++...|..+. ...
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~---~~~rv~~~~gD~f~~----------~p~ 138 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------S---GSNNLTYVGGDMFTS----------IPN 138 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------C---CBTTEEEEECCTTTC----------CCC
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------c---ccCceEEEecCcccC----------CCC
Confidence 346899999999988888877764 49999999 7665422 1 136788887775432 126
Q ss_pred ccEEEEeceeeCCCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--------------------------ccCC
Q 008457 455 FEVILGTDVSYIPEAI--LPLFATAKELTASSNKSLREDQQPAFILCHIF--------------------------RQVD 506 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~--~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~--------------------------r~~~ 506 (564)
+|+++...++++..+- ..+++.+++.| +|+| ...++++.-.. +..+
T Consensus 139 aD~~~l~~vLHdw~d~~~~~iL~~~~~al-~pgg-----~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert 212 (244)
T d1fp2a2 139 ADAVLLKYILHNWTDKDCLRILKKCKEAV-TNDG-----KRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERN 212 (244)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-SGGG-----CCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEE
T ss_pred CcEEEEEeecccCChHHHHHHHHHHHHHc-Cccc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCC
Confidence 7999999999886644 57899999999 9986 33456555332 1112
Q ss_pred hhHHHHHHHHcCCeEEEEcCC
Q 008457 507 EPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 507 ~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..++.+.+.++||++.+++..
T Consensus 213 ~~e~~~ll~~AGf~~~~i~~~ 233 (244)
T d1fp2a2 213 EEEWKKLFIEAGFQHYKISPL 233 (244)
T ss_dssp HHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHcCCceEEEEEC
Confidence 346778888999999998744
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.7e-06 Score=81.02 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=81.6
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc-----ccCCCeeEEEecCCcccccCCCCCCce
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
...+.+||-||.|.|..++.+++..+..+++++|+++.+++.|++.+. ....+++++..|....-. -..++|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~---~~~~~y 152 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK---QNQDAF 152 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---TCSSCE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHh---cCCCCC
Confidence 367789999999999999999877667899999999999999998763 234789999999754221 135689
Q ss_pred eEEEEcccccCCCh--hHHHHHHHHHHhccCCCeEEEEEe
Q 008457 148 DIVTMVFVLSAVSP--EKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 148 D~V~~~~vl~~~~~--~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
|+|++-..-..-+. ---..+++.+++.|+|||++++..
T Consensus 153 DvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 153 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 99998432111110 123468999999999999998864
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=2.7e-07 Score=81.05 Aligned_cols=103 Identities=9% Similarity=0.052 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc-CCCeeEEEecCCcccccCCCCCCceeEEEEc
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTMV 153 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~ 153 (564)
.+.+|||++||+|.++...+.++ ..+|+++|.++.+++.++++.... ..++.++..|+... + .....+||+|++.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrG-a~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~-l--~~~~~~fDlIf~D 118 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF-L--AQKGTPHNIVFVD 118 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH-H--SSCCCCEEEEEEC
T ss_pred chhhhhhhhccccceeeeEEecC-cceeEEEEEeechhhHHHHHHhhccccceeeeeeccccc-c--cccccccCEEEEc
Confidence 57899999999999999888884 348999999999999999876543 35678888887532 1 2256789999995
Q ss_pred ccccCCChhHHHHHHHHHH--hccCCCeEEEEE
Q 008457 154 FVLSAVSPEKMSLVLQNIK--KVLKPTGYVLFR 184 (564)
Q Consensus 154 ~vl~~~~~~~~~~~l~~~~--r~LkpgG~lii~ 184 (564)
=-... ......+..+. .+|+++|.+++.
T Consensus 119 PPY~~---~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 119 PPFRR---GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp CSSST---TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred Ccccc---chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 43222 23445666665 469999999885
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=2e-06 Score=84.19 Aligned_cols=144 Identities=17% Similarity=0.135 Sum_probs=94.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
..+..|.+.+.+.....++.+||||-||+|.++..++ ..+++|+++|.++.+++.+++|+..|++ .++.+...+-
T Consensus 195 ~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La-~~~~~V~gvE~~~~ai~~A~~na~~n~i----~n~~~~~~~~ 269 (358)
T d1uwva2 195 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA-TQAASVVGVEGVPALVEKGQQNARLNGL----QNVTFYHENL 269 (358)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHTTC----CSEEEEECCT
T ss_pred hhhhHHHHHHHHhhccCCCceEEEecccccccchhcc-ccccEEEeccCcHHHHHHHHHhHHhccc----ccceeeecch
Confidence 3455666666654455578899999999998876665 4567999999999999999999999998 4566555443
Q ss_pred CCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcC
Q 008457 439 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG 518 (564)
Q Consensus 439 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g 518 (564)
.+. +... .....++|+|| .|..-.- . ...++.+.++ ++ ...+|++....... +=+..+.+.|
T Consensus 270 ~~~--~~~~-~~~~~~~d~vi-lDPPR~G-~-~~~~~~l~~~--~~--------~~ivYVSCnp~Tla--RDl~~l~~~g 331 (358)
T d1uwva2 270 EED--VTKQ-PWAKNGFDKVL-LDPARAG-A-AGVMQQIIKL--EP--------IRIVYVSCNPATLA--RDSEALLKAG 331 (358)
T ss_dssp TSC--CSSS-GGGTTCCSEEE-ECCCTTC-C-HHHHHHHHHH--CC--------SEEEEEESCHHHHH--HHHHHHHHTT
T ss_pred hhh--hhhh-hhhhccCceEE-eCCCCcc-H-HHHHHHHHHc--CC--------CEEEEEeCCHHHHH--HHHHHHHHCC
Confidence 221 1111 12345799876 4555444 2 3455555443 23 34777775544322 2234455789
Q ss_pred CeEEEEc
Q 008457 519 FRLVDKW 525 (564)
Q Consensus 519 ~~~~~~~ 525 (564)
|+++++.
T Consensus 332 y~l~~i~ 338 (358)
T d1uwva2 332 YTIARLA 338 (358)
T ss_dssp CEEEEEE
T ss_pred CeEeEEE
Confidence 9999885
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.39 E-value=2.1e-07 Score=81.58 Aligned_cols=108 Identities=9% Similarity=0.027 Sum_probs=77.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..+.+|||++||+|.++...+.++ ..+|+++|.++.+++.++++.... ..++++.+.|+...--...-...+||+|+
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 578999999999999999888884 347999999999999999876532 34788899987532110011346899999
Q ss_pred EcccccCCChhHHHHHHHHHH--hccCCCeEEEEEe
Q 008457 152 MVFVLSAVSPEKMSLVLQNIK--KVLKPTGYVLFRD 185 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~--r~LkpgG~lii~~ 185 (564)
+.=-... ......+..+. .+|+|+|.+++..
T Consensus 119 lDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 119 LDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp ECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred echhhhh---hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 8432211 23456677765 4799999988753
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=4.2e-07 Score=81.88 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=73.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC---CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh-hhh
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI-KEE 450 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~---~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~-~~~ 450 (564)
.+.++|||||||+| .+.+.++.. ..+|+.+|.+++..+.+++|+...+.. .++++..-+..+ .+..+ ...
T Consensus 58 ~~~k~vLEiGt~~G-yStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~---~~i~~~~Gda~e--~l~~~~~~~ 131 (219)
T d2avda1 58 IQAKKALDLGTFTG-YSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE---HKIDLRLKPALE--TLDELLAAG 131 (219)
T ss_dssp TTCCEEEEECCTTS-HHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT---TTEEEEESCHHH--HHHHHHHTT
T ss_pred cCCCeEEEEechhh-HHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc---ceEEEEEeehhh--cchhhhhhc
Confidence 36789999999999 555444432 459999999999999999999998875 566665433211 11111 112
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..++||+|+. | -+.+.....++.+.++| +|+|
T Consensus 132 ~~~~fD~ifi-D--~dk~~y~~~~~~~~~lL-~~GG 163 (219)
T d2avda1 132 EAGTFDVAVV-D--ADKENCSAYYERCLQLL-RPGG 163 (219)
T ss_dssp CTTCEEEEEE-C--SCSTTHHHHHHHHHHHE-EEEE
T ss_pred ccCCccEEEE-e--CCHHHHHHHHHHHHHHh-cCCc
Confidence 3568999874 3 35677888899999999 9987
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.35 E-value=1.7e-06 Score=81.17 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+.+||-||.|.|..++.+++..+..+|+++|+++.+++.|++.... ...+++++..|....-. -.+++||
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~---~~~~~yD 164 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR---KFKNEFD 164 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG---GCSSCEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHh---cCCCCCC
Confidence 667999999999999999998876677899999999999999987532 24688999999754321 1456899
Q ss_pred EEEEcccccCC-Chh--HHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAV-SPE--KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~-~~~--~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++-..-... +.. --..+++.+++.|+|||+++...
T Consensus 165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 99984322111 100 13579999999999999998753
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.35 E-value=3e-06 Score=78.85 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc-----ccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+.+||-||.|.|..+..+++..+..+|+++|+++.+++.|++... ....+++++..|....-. -.+.+||
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~---~~~~~yD 150 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA---KSENQYD 150 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH---TCCSCEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHh---hcCCCCC
Confidence 66789999999999999999877666799999999999999998753 234688999999754321 1457899
Q ss_pred EEEEcccccCCChh--HHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSPE--KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~~--~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++-..-..-+.. --..+++.+++.|+|||+++...
T Consensus 151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 99984321110000 13468999999999999998753
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.34 E-value=8.2e-07 Score=80.86 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=61.4
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~ 138 (564)
+...+.+.+...++.+|||||||+|.+|..|++. +.+|+++|+++.+++.++++... ..++.++.+|+...++
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~-~~n~~i~~~D~l~~~~ 81 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD-HDNFQVLNKDILQFKF 81 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT-CCSEEEECCCGGGCCC
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhc-ccchhhhhhhhhhccc
Confidence 3455566666689999999999999999999998 67899999999999999987653 4689999999976544
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.34 E-value=6.9e-07 Score=77.78 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=90.8
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCccccc-C
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLS-R 140 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~-~ 140 (564)
.+..++.+.+.+.++..++|..+|.|.++..+++. +++|+|+|.++.++..|+... ..++.+++.++....-. .
T Consensus 5 Vll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~---~~~~~~~~~~f~~~~~~l~ 79 (182)
T d1wg8a2 5 VLYQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH---LPGLTVVQGNFRHLKRHLA 79 (182)
T ss_dssp TTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC---CTTEEEEESCGGGHHHHHH
T ss_pred hHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc---ccceeEeehHHHHHHHHHH
Confidence 35567777888899999999999999999999987 679999999999999998763 35788888877543211 1
Q ss_pred CCCCCceeEEEEccccc--CCC-----hhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 141 QISPSSIDIVTMVFVLS--AVS-----PEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~--~~~-----~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.+..+.+|.|+.-..+. ++. .......|......|+|||.+++..+.
T Consensus 80 ~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 80 ALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred HcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 23457899999854332 110 123456788889999999999987654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=4.1e-06 Score=81.90 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=80.9
Q ss_pred HHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCC
Q 008457 66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 66 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~ 144 (564)
...+.+...++.+|||+-||+|.++..|++. ..+|+|+|.++.+++.|+++....+ .++.|+.++............
T Consensus 203 ~v~~~~~~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~ 280 (358)
T d1uwva2 203 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 280 (358)
T ss_dssp HHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGT
T ss_pred HHHHhhccCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhh
Confidence 3344555678899999999999999999887 6789999999999999998866444 688999998865332223345
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.++|+|+. --|+......++.+.+ ++|.-+++++
T Consensus 281 ~~~d~vil-----DPPR~G~~~~~~~l~~-~~~~~ivYVS 314 (358)
T d1uwva2 281 NGFDKVLL-----DPARAGAAGVMQQIIK-LEPIRIVYVS 314 (358)
T ss_dssp TCCSEEEE-----CCCTTCCHHHHHHHHH-HCCSEEEEEE
T ss_pred ccCceEEe-----CCCCccHHHHHHHHHH-cCCCEEEEEe
Confidence 67999988 2222233345666655 3777777776
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.31 E-value=5e-07 Score=87.43 Aligned_cols=113 Identities=17% Similarity=0.276 Sum_probs=82.9
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHh-----CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCC
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAA-----YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-----~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 143 (564)
+++...++.+|||.|||+|.++..+..+ .+..+++|+|+++.++..|+...........+...|... ..+
T Consensus 111 ~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~-----~~~ 185 (328)
T d2f8la1 111 KVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-----NLL 185 (328)
T ss_dssp HHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-----CCC
T ss_pred HHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccc-----ccc
Confidence 3445577899999999999999887653 234589999999999999987765555667777777643 235
Q ss_pred CCceeEEEEcccccCCC----------------hhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 144 PSSIDIVTMVFVLSAVS----------------PEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~----------------~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
..+||+|+++--+.... ......++..+.+.|+|||++++..+
T Consensus 186 ~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 186 VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 67899999975432111 01123479999999999999887644
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.29 E-value=9.3e-07 Score=79.47 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=77.8
Q ss_pred CCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh-hhcC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENN 452 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~-~~~~ 452 (564)
+.++|||+|||+|..+..++.. ...+|+++|.+++.++.++.|+...++. +++.+..-+..+ .+..+. ....
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~---~~i~l~~Gd~~e--~l~~l~~~~~~ 130 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ---DKVTILNGASQD--LIPQLKKKYDV 130 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHHH--HGGGHHHHSCC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC---ccceeeeccccc--cccchhhcccc
Confidence 5579999999999555555543 2469999999999999999999998874 567776544321 122222 2344
Q ss_pred CCccEEEEeceeeCCCChHH--HHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHc
Q 008457 453 EGFEVILGTDVSYIPEAILP--LFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC 517 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~~~~~--l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 517 (564)
..||+|+. |. +...... .+....++| +|+| + +++-..-....+.+.+..+..
T Consensus 131 ~~~D~ifi-D~--~~~~~~~~~~l~~~~~lL-kpGG--------v-Iv~Ddvl~~g~~~~~~~vr~~ 184 (214)
T d2cl5a1 131 DTLDMVFL-DH--WKDRYLPDTLLLEKCGLL-RKGT--------V-LLADNVIVPGTPDFLAYVRGS 184 (214)
T ss_dssp CCEEEEEE-CS--CGGGHHHHHHHHHHTTCE-EEEE--------E-EEESCCCCCCCHHHHHHHHHC
T ss_pred cccceeee-cc--cccccccHHHHHHHhCcc-CCCc--------E-EEEeCcCCCCChHHHHHHhcc
Confidence 68998873 42 2232333 244445678 8876 4 444333333444566655543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.26 E-value=1e-06 Score=82.75 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc-----ccCCCeeEEEecCCcccccCCCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~~~fD 148 (564)
..+.+||-||.|.|..++.+++..+..+++++|+++.+++.+++.+. ....+++.+..|....-. ...+++||
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~--~~~~~~yD 156 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK--NAAEGSYD 156 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH--TSCTTCEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh--hccccCcc
Confidence 56789999999999999998887666789999999999999998753 234788999988753221 22456899
Q ss_pred EEEEcccccCCCh--hHHHHHHHHHHhccCCCeEEEEEe
Q 008457 149 IVTMVFVLSAVSP--EKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 149 ~V~~~~vl~~~~~--~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+|++-..-..-+. ---..+++.+++.|+|||+++...
T Consensus 157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 9998332111110 123569999999999999999864
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.25 E-value=3.2e-07 Score=84.08 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=76.8
Q ss_pred ccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCC
Q 008457 55 RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI 134 (564)
Q Consensus 55 ~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~ 134 (564)
+|..+ ..+...+.+.+...++.+|||||||+|.+|..|++. +.+|+++|+++.+++.++++... ..++.++.+|+.
T Consensus 10 nFL~d-~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~-~~n~~ii~~D~l 85 (245)
T d1yuba_ 10 NFLTS-EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL-NTRVTLIHQDIL 85 (245)
T ss_dssp CBCCC-TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT-CSEEEECCSCCT
T ss_pred cccCC-HHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhh-ccchhhhhhhhh
Confidence 34433 334456667777788999999999999999999998 67899999999999888777643 358999999997
Q ss_pred cccccCCCCCCceeEEEEcccccCCChhHHHHHH
Q 008457 135 SDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVL 168 (564)
Q Consensus 135 ~~~~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l 168 (564)
..++ +...++.|+++.- .|++..-+..++
T Consensus 86 ~~~~----~~~~~~~vv~NLP-Y~Ist~il~~~l 114 (245)
T d1yuba_ 86 QFQF----PNKQRYKIVGNIP-YHLSTQIIKKVV 114 (245)
T ss_dssp TTTC----CCSSEEEEEEECC-SSSCHHHHHHHH
T ss_pred cccc----ccceeeeEeeeee-hhhhHHHHHHHh
Confidence 6543 5566666666555 566533333333
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.25 E-value=5.2e-07 Score=79.44 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=74.9
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++..+||++||+|+.+..++... ..+|+++|.+++|++.+++++...+ .++.+...++.+. ...+..+.
T Consensus 20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-----~r~~~~~~~f~~~--~~~~~~~~ 92 (192)
T d1m6ya2 20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-----DRVSLFKVSYREA--DFLLKTLG 92 (192)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-----TTEEEEECCGGGH--HHHHHHTT
T ss_pred CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-----ccccchhHHHhhH--HHHHHHcC
Confidence 34588899999999999998887753 4699999999999999999987643 4566665544322 11223445
Q ss_pred CCCccEEEEeceeeC----------CCChHHHHHHHHHHhhccCC
Q 008457 452 NEGFEVILGTDVSYI----------PEAILPLFATAKELTASSNK 486 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~----------~~~~~~l~~~~~~ll~~~~g 486 (564)
.++||.|+ .|+-+. .......+....++| +++|
T Consensus 93 ~~~vdgIl-~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~L-k~gG 135 (192)
T d1m6ya2 93 IEKVDGIL-MDLGVSTYQLKGENRELENLKEFLKKAEDLL-NPGG 135 (192)
T ss_dssp CSCEEEEE-EECSCCHHHHHTSHTHHHHHHHHHHHGGGGE-EEEE
T ss_pred CCCcceee-eccchhHhhhhhhhccchhHHHHHHHHHHhc-CCCC
Confidence 67999887 455442 234556777778888 8876
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.20 E-value=9.2e-07 Score=83.35 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=79.9
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc-----cCCCeeEEEecCCcccccCCCCCCce
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
...+.+||-||.|.|..++.+++..+..+|+++|+++.+++.|++.... ...+++++..|....-- -..++|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~---~~~~~y 180 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK---NHKNEF 180 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH---HCTTCE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHH---hCCCCC
Confidence 3678899999999999999998876557999999999999999987642 23678888888754221 145789
Q ss_pred eEEEEcccccCCChh--HHHHHHHHHHhccCCCeEEEEEe
Q 008457 148 DIVTMVFVLSAVSPE--KMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 148 D~V~~~~vl~~~~~~--~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
|+|++-..-..-+.. --..+++.+++.|+|||+++...
T Consensus 181 DvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 181 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred CEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 999984322111111 24568999999999999999853
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.18 E-value=3.7e-06 Score=75.83 Aligned_cols=102 Identities=14% Similarity=0.095 Sum_probs=73.8
Q ss_pred CCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh--hc
Q 008457 376 AGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE--EN 451 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~--~~ 451 (564)
..++|||||+|+|.-+..++.. ...+|+.+|.+++..+.+++|+...+.. +++.+..-+..+ .++.+.. ..
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~---~~i~~~~g~a~~--~L~~l~~~~~~ 133 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD---HKIDFREGPALP--VLDEMIKDEKN 133 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG---GGEEEEESCHHH--HHHHHHHCGGG
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc---cceeeeehHHHH--HHHHHHhcccc
Confidence 6679999999999444444432 2469999999999999999999998875 567766544321 1222211 13
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.++||+|+. |. +.......++.+..+| +|+|
T Consensus 134 ~~~fD~iFi-Da--~k~~y~~~~e~~~~ll-~~gG 164 (227)
T d1susa1 134 HGSYDFIFV-DA--DKDNYLNYHKRLIDLV-KVGG 164 (227)
T ss_dssp TTCBSEEEE-CS--CSTTHHHHHHHHHHHB-CTTC
T ss_pred CCceeEEEe-cc--chhhhHHHHHHHHhhc-CCCc
Confidence 568999884 53 5677889999999999 9988
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=2.1e-05 Score=73.56 Aligned_cols=115 Identities=13% Similarity=0.186 Sum_probs=81.9
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEe-cCCcccccCCCCCCcee
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVC-DLISDDLSRQISPSSID 148 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~~fD 148 (564)
.+.+.++.+|||+.+|.|.=+.+++....+.+|+++|.++.-+...+.+....+.++..... |..... ....+.||
T Consensus 97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~---~~~~~~fd 173 (284)
T d1sqga2 97 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ---WCGEQQFD 173 (284)
T ss_dssp HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH---HHTTCCEE
T ss_pred ccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccch---hccccccc
Confidence 45668999999999999999999998876789999999999998888877655544333333 222111 22456899
Q ss_pred EEEE---cc---cccCCC-------hh-------HHHHHHHHHHhccCCCeEEEEEecC
Q 008457 149 IVTM---VF---VLSAVS-------PE-------KMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 149 ~V~~---~~---vl~~~~-------~~-------~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
.|++ +. ++..-+ +. ....+|.++.+.|||||+|+.++=.
T Consensus 174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 9998 22 222111 11 2457888899999999999887543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=4.3e-05 Score=66.06 Aligned_cols=104 Identities=16% Similarity=0.230 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC----CCCCCcee
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR----QISPSSID 148 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~----~~~~~~fD 148 (564)
.++.+|||+||+.|.|+..+.+. .+...++++|+.+- ....++.++++|+....... ....+++|
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------cccCCceEeecccccchhhhhhhhhccCccee
Confidence 68899999999999999988876 45678999998651 12457788899986543211 22457899
Q ss_pred EEEEcccccCCCh---------hHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 149 IVTMVFVLSAVSP---------EKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 149 ~V~~~~vl~~~~~---------~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
+|++-.+..-... +-....+.-+.++|++||.+++..+.
T Consensus 91 lVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 9999766543321 11234556667999999999997654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.10 E-value=3.8e-06 Score=77.14 Aligned_cols=120 Identities=11% Similarity=0.047 Sum_probs=82.7
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCC-CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
...+|||||||+|.++..++.+.+ .+++..|+ |.+++. .. ...++.....|+.+. .+ .
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~---~~~r~~~~~~d~~~~--------~P--~ 139 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDL-PHVIED-------AP---SYPGVEHVGGDMFVS--------IP--K 139 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-TTTTTT-------CC---CCTTEEEEECCTTTC--------CC--C
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEccc-HHhhhh-------cc---cCCceEEeccccccc--------CC--C
Confidence 457899999999988888888765 49999999 555431 11 125677777776432 22 3
Q ss_pred ccEEEEeceeeCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee----------------------------cc
Q 008457 455 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIF----------------------------RQ 504 (564)
Q Consensus 455 fD~Ii~~d~~y~~--~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~----------------------------r~ 504 (564)
.|+++..-++++. +....+++.+.+.| +|+| ++++.-.. +.
T Consensus 140 ad~~~l~~vlh~~~d~~~~~iL~~~~~al-~pgg--------~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~e 210 (243)
T d1kyza2 140 ADAVFMKWICHDWSDEHCLKFLKNCYEAL-PDNG--------KVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKE 210 (243)
T ss_dssp CSCEECSSSSTTSCHHHHHHHHHHHHHHC-CSSS--------CEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cceEEEEEEeecCCHHHHHHHHHHHHHhc-CCCc--------eEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCc
Confidence 4666667777664 35778899999999 9977 55554321 11
Q ss_pred CChhHHHHHHHHcCCeEEEEc
Q 008457 505 VDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 505 ~~~~~~~~~~~~~g~~~~~~~ 525 (564)
.+..++.+.++++||+.+++.
T Consensus 211 rt~~e~~~ll~~AGf~~vkv~ 231 (243)
T d1kyza2 211 RTQKEFEDLAKGAGFQGFKVH 231 (243)
T ss_dssp EEHHHHHHHHHHHCCSCEEEE
T ss_pred CCHHHHHHHHHHcCCCcEEEE
Confidence 123467788889999999986
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.09 E-value=3.3e-06 Score=76.51 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=77.9
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 140 (564)
.+...+.+++...++.+|||.|||+|.++..+.+.. ...+++|+|+++.++..++ .....++|....
T Consensus 6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~--------~~~~~~~~~~~~---- 73 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--------WAEGILADFLLW---- 73 (223)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT--------TEEEEESCGGGC----
T ss_pred HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc--------cceeeeeehhcc----
Confidence 445556667777889999999999999998887663 3567999999987543322 335566665432
Q ss_pred CCCCCceeEEEEcccccCC---Ch------------------------hHHHHHHHHHHhccCCCeEEEEEec
Q 008457 141 QISPSSIDIVTMVFVLSAV---SP------------------------EKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 141 ~~~~~~fD~V~~~~vl~~~---~~------------------------~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
....+||+|+++--+... .. +-...++..+.+.|+|||++.+..+
T Consensus 74 -~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 74 -EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp -CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -ccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 245789999997654321 00 0124567889999999999988654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.04 E-value=6.2e-06 Score=78.19 Aligned_cols=138 Identities=13% Similarity=0.151 Sum_probs=86.3
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHh-cCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTA-NLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~-n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
..++||.||.|.|+++..+++.. ..+|+++|+++++++.+++.+.. +.......++++..-|+. .-+. -...
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~-----~~l~-~~~~ 150 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR-----AYLE-RTEE 150 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH-----HHHH-HCCC
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHH-----HHhh-hcCC
Confidence 45799999999998887777654 56999999999999999988643 221112356766644432 2222 2456
Q ss_pred CccEEEEece---eeCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh----hHHHHHHHHcCCeE
Q 008457 454 GFEVILGTDV---SYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE----PSMLSAATQCGFRL 521 (564)
Q Consensus 454 ~fD~Ii~~d~---~y~~~-----~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~~~g~~~ 521 (564)
+||+|+ .|+ ..... .-..+++.+++.| +|+| ++++-...-.... .....++++ -|..
T Consensus 151 ~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L-~p~G--------vlv~~~~s~~~~~~~~~~~i~~tl~~-~F~~ 219 (312)
T d1uira_ 151 RYDVVI-IDLTDPVGEDNPARLLYTVEFYRLVKAHL-NPGG--------VMGMQTGMILLTHHRVHPVVHRTVRE-AFRY 219 (312)
T ss_dssp CEEEEE-EECCCCBSTTCGGGGGSSHHHHHHHHHTE-EEEE--------EEEEEEEEECC---CHHHHHHHHHHT-TCSE
T ss_pred cccEEE-EeCCCcccccchhhhhhhHHHHHHHHHhc-CCCc--------eEEEecCCcccchHHHHHHHHHHHHH-hCce
Confidence 899998 444 22211 1257889999999 9988 6665433222211 123344444 5666
Q ss_pred EEEcCCCCC
Q 008457 522 VDKWPSKNS 530 (564)
Q Consensus 522 ~~~~~~~~~ 530 (564)
+..+....|
T Consensus 220 V~~y~~~vP 228 (312)
T d1uira_ 220 VRSYKNHIP 228 (312)
T ss_dssp EEEEEEEEG
T ss_pred EEEEEeeeC
Confidence 666654333
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.01 E-value=3.8e-06 Score=75.89 Aligned_cols=111 Identities=10% Similarity=0.053 Sum_probs=73.6
Q ss_pred hhhccCCCCCeEEEEcCCccccHHHHHHh----CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCC
Q 008457 68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAA----YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143 (564)
Q Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 143 (564)
.+++...++.+|||||++.|.-+..++.. .+.++++++|+.+.....+ .....+++++.+|.........+.
T Consensus 73 ~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~----~~~~~~I~~i~gDs~~~~~~~~l~ 148 (232)
T d2bm8a1 73 HDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP----ASDMENITLHQGDCSDLTTFEHLR 148 (232)
T ss_dssp HHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC----GGGCTTEEEEECCSSCSGGGGGGS
T ss_pred HHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh----hccccceeeeecccccHHHHHHHH
Confidence 33444456889999999999876655532 4578999999987543222 122468999999986655443455
Q ss_pred CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 144 PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 144 ~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
...+|+|+.-.. |+- +....-+ .+..+|++||++++.+.
T Consensus 149 ~~~~dlIfID~~-H~~--~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 149 EMAHPLIFIDNA-HAN--TFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SSCSSEEEEESS-CSS--HHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred hcCCCEEEEcCC-cch--HHHHHHH-HHhcccCcCCEEEEEcC
Confidence 667888877543 433 2222223 46689999999998653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.98 E-value=1.7e-05 Score=73.92 Aligned_cols=139 Identities=18% Similarity=0.118 Sum_probs=88.5
Q ss_pred CCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCC------CCCCCceEEEEeecCCCccchhhhh
Q 008457 376 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLK------PPFLAKLITKRLEWGNRDHIEAIKE 449 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~------~~~~~~i~~~~l~w~~~~~~~~~~~ 449 (564)
+.++||-||.|.|+.+..++.....+|+++|+++++++.+++-...+.. .....++++..-|. ..-+.
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da-----~~~l~- 145 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG-----FEFIK- 145 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH-----HHHHH-
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChH-----HHHHh-
Confidence 5679999999999777777776667999999999999999976543321 01124566654332 22222
Q ss_pred hcCCCccEEEEeceeeCCCC-----hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh---HHHHHHHHcCCeE
Q 008457 450 ENNEGFEVILGTDVSYIPEA-----ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRL 521 (564)
Q Consensus 450 ~~~~~fD~Ii~~d~~y~~~~-----~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~g~~~ 521 (564)
..++||+|| .|+.-.... -..+++.+++.| +|+| ++++-...-..... .....+++. |..
T Consensus 146 -~~~~yDvIi-~D~~~~~~~~~~L~t~eF~~~~~~~L-~~~G--------v~v~q~~s~~~~~~~~~~~~~tl~~~-F~~ 213 (276)
T d1mjfa_ 146 -NNRGFDVII-ADSTDPVGPAKVLFSEEFYRYVYDAL-NNPG--------IYVTQAGSVYLFTDELISAYKEMKKV-FDR 213 (276)
T ss_dssp -HCCCEEEEE-EECCCCC-----TTSHHHHHHHHHHE-EEEE--------EEEEEEEETTTSHHHHHHHHHHHHHH-CSE
T ss_pred -ccCCCCEEE-EeCCCCCCCcccccCHHHHHhhHhhc-CCCc--------eEEEecCCcchhHHHHHHHHHHHHhh-CCe
Confidence 246899998 465332221 256899999999 9988 66654433333322 344566555 566
Q ss_pred EEEcCCCCCCC
Q 008457 522 VDKWPSKNSAS 532 (564)
Q Consensus 522 ~~~~~~~~~~~ 532 (564)
+..+.+..|..
T Consensus 214 v~~y~~~vP~y 224 (276)
T d1mjfa_ 214 VYYYSFPVIGY 224 (276)
T ss_dssp EEEEEECCTTS
T ss_pred eEEEEecCcCC
Confidence 66665554443
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.95 E-value=1.2e-05 Score=77.99 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=77.2
Q ss_pred CCCeEEEeCCcccHHHHHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCC-----------CceEEEEeecCCCcc
Q 008457 376 AGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFL-----------AKLITKRLEWGNRDH 443 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~-----------~~i~~~~l~w~~~~~ 443 (564)
++.+|||..||||+.++-++. .+..+|++.|+|+.+++.+++|+..|+..... ..+.+...|+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~---- 120 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN---- 120 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH----
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh----
Confidence 678999999999988885544 56779999999999999999999999874210 12333333221
Q ss_pred chhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF 502 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~ 502 (564)
.+.......||+|. -|. | ....++++..-+.+ +.+| .+.++.+.
T Consensus 121 --~~~~~~~~~fDvID-iDP-f--Gs~~pfldsAi~a~-~~~G--------ll~vTaTD 164 (375)
T d2dula1 121 --RLMAERHRYFHFID-LDP-F--GSPMEFLDTALRSA-KRRG--------ILGVTATD 164 (375)
T ss_dssp --HHHHHSTTCEEEEE-ECC-S--SCCHHHHHHHHHHE-EEEE--------EEEEEECC
T ss_pred --hhhHhhcCcCCccc-CCC-C--CCcHHHHHHHHHHh-ccCC--------EEEEEecC
Confidence 11122456899876 465 3 35688999999999 8877 77777665
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.89 E-value=1.5e-05 Score=76.60 Aligned_cols=142 Identities=9% Similarity=0.007 Sum_probs=87.9
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc----C--CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG----S--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~----~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
.|++.+........+.+|||.|||+|++...+... . ..+++++|+++.++..++.|+..++.. ......
T Consensus 104 ~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-----~~~~~~ 178 (328)
T d2f8la1 104 IVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-----MTLLHQ 178 (328)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-----CEEEES
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh-----hhhhcc
Confidence 45555443222336679999999999887766532 1 237999999999999999999887653 233333
Q ss_pred ecCCCccchhhhhhcCCCccEEEEeceeeCCC------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 008457 437 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPE------------------AILPLFATAKELTASSNKSLREDQQPAFIL 498 (564)
Q Consensus 437 ~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~------------------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~ 498 (564)
++.. .....+||+||++.+.-... ....++..+.++| +++| .+.+
T Consensus 179 d~~~--------~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~L-k~~G--------~~~~ 241 (328)
T d2f8la1 179 DGLA--------NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYT-KPGG--------YLFF 241 (328)
T ss_dssp CTTS--------CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTE-EEEE--------EEEE
T ss_pred cccc--------ccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhc-CCCC--------ceEE
Confidence 3221 12446899999886531111 2334688888999 9887 4444
Q ss_pred EEeec---cCChhHHHHHHHHcCCeEEEEcCC
Q 008457 499 CHIFR---QVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 499 ~~~~r---~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
..+.. ......+.+.+.+. +.+..+...
T Consensus 242 I~p~~~l~~~~~~~lR~~L~~~-~~i~~ii~l 272 (328)
T d2f8la1 242 LVPDAMFGTSDFAKVDKFIKKN-GHIEGIIKL 272 (328)
T ss_dssp EEEGGGGGSTTHHHHHHHHHHH-EEEEEEEEC
T ss_pred EecCccccCchhHHHHHHHHhC-CcEEEEEEC
Confidence 44443 22233455555443 466666533
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.88 E-value=2.2e-05 Score=71.06 Aligned_cols=90 Identities=10% Similarity=0.073 Sum_probs=62.1
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
+++.+.......++.+|||+|||+|.++..++.. +++|+++|+++.+++.++++...+ .++.+..-|.-+.
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~~------~n~~i~~~D~l~~-- 79 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH------DNFQVLNKDILQF-- 79 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC------CSEEEECCCGGGC--
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhcc------cchhhhhhhhhhc--
Confidence 3555666666678999999999999999888875 568999999999999998865331 3455554333221
Q ss_pred chhhhhhcCCCccEEEEeceeeCCC
Q 008457 444 IEAIKEENNEGFEVILGTDVSYIPE 468 (564)
Q Consensus 444 ~~~~~~~~~~~fD~Ii~~d~~y~~~ 468 (564)
+++.... +.+.+.+.|+..
T Consensus 80 -----~~~~~~~-~~vv~NLPYnIs 98 (235)
T d1qama_ 80 -----KFPKNQS-YKIFGNIPYNIS 98 (235)
T ss_dssp -----CCCSSCC-CEEEEECCGGGH
T ss_pred -----ccccccc-ceeeeeehhhhh
Confidence 1122222 344478888865
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.84 E-value=4.7e-05 Score=71.10 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=86.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..++||=||-|.|+++..++... ..+|+++|+++++++.+++-...+.......++++..-| ....+.....++
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~D-----a~~~l~~~~~~~ 154 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGD-----GVAFLKNAAEGS 154 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESC-----HHHHHHTSCTTC
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEcc-----HHHHHhhccccC
Confidence 45799999999998888777754 469999999999999999866443322223556555332 233333334568
Q ss_pred ccEEEEeceeeCCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh---HHHHHHHHcCCeEEE
Q 008457 455 FEVILGTDVSYIPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVD 523 (564)
Q Consensus 455 fD~Ii~~d~~y~~~------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~g~~~~~ 523 (564)
||+||. |+. ++. .-..+++.+++.| +|+| ++++-........+ .....+++.+..+..
T Consensus 155 yDvIi~-D~~-dp~~~~~~L~t~eF~~~~~~~L-~~~G--------i~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~ 221 (290)
T d1xj5a_ 155 YDAVIV-DSS-DPIGPAKELFEKPFFQSVARAL-RPGG--------VVCTQAESLWLHMDIIEDIVSNCREIFKGSVN 221 (290)
T ss_dssp EEEEEE-CCC-CTTSGGGGGGSHHHHHHHHHHE-EEEE--------EEEEECCCTTTCHHHHHHHHHHHHHHCSSCEE
T ss_pred ccEEEE-cCC-CCCCcchhhCCHHHHHHHHHhc-CCCc--------EEEEecCCcHHHHHHHHHHHhhhhhhccccee
Confidence 999984 543 221 2356899999999 9988 66665444333332 455667776655543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.84 E-value=8.5e-05 Score=70.29 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=94.4
Q ss_pred hccCCCCCeEEEEcCCccccHHHHHHhC-CCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCce
Q 008457 70 YFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSI 147 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~f 147 (564)
.+.+.++.+|||+.||.|.=+.+++... ....+++.|.++.-+...+.+....+ .++.....|.... +.....|
T Consensus 111 ~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~----~~~~~~f 186 (313)
T d1ixka_ 111 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI----GELNVEF 186 (313)
T ss_dssp HHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG----GGGCCCE
T ss_pred cccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccc----ccccccc
Confidence 4556899999999999999988888763 36789999999999988877654333 4555544454322 2246789
Q ss_pred eEEEE---cc---cccC-------CChh-------HHHHHHHHHHhccCCCeEEEEEecCCCchhhhhhcccccccccce
Q 008457 148 DIVTM---VF---VLSA-------VSPE-------KMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENF 207 (564)
Q Consensus 148 D~V~~---~~---vl~~-------~~~~-------~~~~~l~~~~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~ 207 (564)
|.|++ +. ++.. ...+ ...++|.+..+.|||||.++.++=.....
T Consensus 187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e---------------- 250 (313)
T d1ixka_ 187 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE---------------- 250 (313)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG----------------
T ss_pred cEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH----------------
Confidence 99998 11 2211 1111 24467888899999999988875443221
Q ss_pred eecCCCceeeccCHHHHHHHHHhCCCcEEEee
Q 008457 208 YVRGDGTRAFYFSNDFLTSLFKENGFDVEELG 239 (564)
Q Consensus 208 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 239 (564)
-+.+.+..++++.+|+++...
T Consensus 251 -----------ENE~VV~~~L~~~~~~~~~~~ 271 (313)
T d1ixka_ 251 -----------ENEFVIQWALDNFDVELLPLK 271 (313)
T ss_dssp -----------GTHHHHHHHHHHSSEEEECCC
T ss_pred -----------hHHHHHHHHHhcCCCEEeecc
Confidence 146667777888777766543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.83 E-value=4.5e-05 Score=68.67 Aligned_cols=154 Identities=14% Similarity=0.055 Sum_probs=94.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHh--cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh--hh
Q 008457 375 VAGKKVLELGCGCGGICSMVAA--GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK--EE 450 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~--~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~--~~ 450 (564)
..+.+|+|+|+|.| ++++.++ ....+|+++|-+..=+..++.-+..-++ .++.+..-.. +.+. ..
T Consensus 69 ~~~~~ilDiGSGaG-fPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L----~n~~i~~~R~------E~~~~~~~ 137 (239)
T d1xdza_ 69 NQVNTICDVGAGAG-FPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL----ENTTFCHDRA------ETFGQRKD 137 (239)
T ss_dssp GGCCEEEEECSSSC-TTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC----SSEEEEESCH------HHHTTCTT
T ss_pred cCCCeEEeecCCCc-hHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC----CCcEEEeehh------hhcccccc
Confidence 35679999999998 6666555 3456999999998777777766555554 2344432211 1110 01
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh--hHHHHHHHHcCCeEEEEcCCC
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE--PSMLSAATQCGFRLVDKWPSK 528 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~~g~~~~~~~~~~ 528 (564)
...+||+|++- -...++.++.....++ +++| . ++.+.-+.... ......+...|+++..+....
T Consensus 138 ~~~~~D~v~sR----Ava~l~~ll~~~~~~l-~~~g--------~-~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~ 203 (239)
T d1xdza_ 138 VRESYDIVTAR----AVARLSVLSELCLPLV-KKNG--------L-FVALKAASAEEELNAGKKAITTLGGELENIHSFK 203 (239)
T ss_dssp TTTCEEEEEEE----CCSCHHHHHHHHGGGE-EEEE--------E-EEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccccceEEEEh----hhhCHHHHHHHHhhhc-ccCC--------E-EEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEe
Confidence 23589999874 4567999999999999 8876 4 44444443322 233445567799988876655
Q ss_pred CCCCCccccccccccCCCCcccCCC
Q 008457 529 NSASPSESIISSWFSENGHEVYLPS 553 (564)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (564)
.|.....+.+..+-.....+..|+.
T Consensus 204 lp~~~~~r~lv~i~K~~~~p~~yPR 228 (239)
T d1xdza_ 204 LPIEESDRNIMVIRKIKNTPKKYPR 228 (239)
T ss_dssp CTTTCCEEEEEEEEECSCCCTTCSC
T ss_pred CCCCCCCEEEEEEEECCCCCCCCCC
Confidence 5544444333333345555555554
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.00012 Score=67.62 Aligned_cols=82 Identities=26% Similarity=0.290 Sum_probs=64.1
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccccc--CCCeeEEEecCCcccccCC
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQ 141 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~ 141 (564)
...+.+.+...++..|||||+|.|.+|..|++. +.+|+++++++.+++..++..... ..+++++.+|+...++
T Consensus 10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~--- 84 (278)
T d1zq9a1 10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL--- 84 (278)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC---
T ss_pred HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh---
Confidence 344555566678999999999999999999998 679999999999999998876532 3678999999976543
Q ss_pred CCCCceeEEEEc
Q 008457 142 ISPSSIDIVTMV 153 (564)
Q Consensus 142 ~~~~~fD~V~~~ 153 (564)
+ .++.|+.+
T Consensus 85 -~--~~~~vV~N 93 (278)
T d1zq9a1 85 -P--FFDTCVAN 93 (278)
T ss_dssp -C--CCSEEEEE
T ss_pred -h--hhhhhhcc
Confidence 2 24566664
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=1.4e-05 Score=73.12 Aligned_cols=72 Identities=10% Similarity=0.074 Sum_probs=59.3
Q ss_pred HHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc
Q 008457 64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138 (564)
Q Consensus 64 ~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~ 138 (564)
...+.+.+...++..|||||||.|.+|..|++. +.+|+++|+++.+++..+.+... ..+++++.+|+...++
T Consensus 10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~-~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFL-GPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTT-GGGEEEECSCGGGCCH
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhh-ccchhHHhhhhhhhcc
Confidence 345556666678999999999999999999987 57899999999999999886543 3589999999976443
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.76 E-value=0.0001 Score=68.13 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=89.6
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..++||-||-|.|+.+..++.. ...+|+++|+++++++.+++....+.......++++..-|. ..-+. ....+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~-----~~~l~-~~~~~ 148 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG-----FMHIA-KSENQ 148 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS-----HHHHH-TCCSC
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechH-----HHHHh-hcCCC
Confidence 4579999999999888887765 45799999999999999998776544333345666654332 22222 24568
Q ss_pred ccEEEEeceee---CCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEEEEcC
Q 008457 455 FEVILGTDVSY---IPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 455 fD~Ii~~d~~y---~~~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~~~ 526 (564)
||+|+ .|+.- ... .-..+.+.+++.| +|+| +++.-...-.... ......+++. |.....+.
T Consensus 149 yDvIi-~D~~~p~~~~~~L~t~eFy~~~~~~L-~~~G--------v~v~q~~s~~~~~~~~~~i~~tl~~~-F~~v~~y~ 217 (274)
T d1iy9a_ 149 YDVIM-VDSTEPVGPAVNLFTKGFYAGIAKAL-KEDG--------IFVAQTDNPWFTPELITNVQRDVKEI-FPITKLYT 217 (274)
T ss_dssp EEEEE-ESCSSCCSCCCCCSTTHHHHHHHHHE-EEEE--------EEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred CCEEE-EcCCCCCCcchhhccHHHHHHHHhhc-CCCc--------eEEEecCCccccHHHHHHHHHhhhhh-cCceEEEE
Confidence 99998 34311 111 2567889999999 9988 6555433322222 2344555554 55555665
Q ss_pred CCCCCC
Q 008457 527 SKNSAS 532 (564)
Q Consensus 527 ~~~~~~ 532 (564)
...|+-
T Consensus 218 ~~vPsy 223 (274)
T d1iy9a_ 218 ANIPTY 223 (274)
T ss_dssp ECCTTS
T ss_pred EEeeec
Confidence 555543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.76 E-value=3.5e-05 Score=71.93 Aligned_cols=140 Identities=13% Similarity=0.067 Sum_probs=89.0
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..++||-||.|.|++...++... ..+|+++|+++++++.+++.+..+.......++++..-|. .+-+. -...+
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da-----~~~l~-~~~~~ 162 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG-----AEYVR-KFKNE 162 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH-----HHHGG-GCSSC
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhH-----HHHHh-cCCCC
Confidence 45799999999998887777654 5699999999999999998766543222235666664432 22222 24568
Q ss_pred ccEEEEeceeeC---C---CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCCh---hHHHHHHHHcCCeEEEEc
Q 008457 455 FEVILGTDVSYI---P---EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 455 fD~Ii~~d~~y~---~---~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~~g~~~~~~~ 525 (564)
||+|+. |+.-. + -.-..+++.+++.| +|+| ++++-........ ......+.+. |.....+
T Consensus 163 yDvIi~-D~~dp~~~~~~~L~t~efy~~~~~~L-~~~G--------i~v~q~~sp~~~~~~~~~i~~tl~~v-F~~v~~y 231 (295)
T d1inla_ 163 FDVIII-DSTDPTAGQGGHLFTEEFYQACYDAL-KEDG--------VFSAETEDPFYDIGWFKLAYRRISKV-FPITRVY 231 (295)
T ss_dssp EEEEEE-EC----------CCSHHHHHHHHHHE-EEEE--------EEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEE
T ss_pred CCEEEE-cCCCCCcCchhhhccHHHHHHHHhhc-CCCc--------EEEEecCChhhhhHHHHHHHHHHHhh-cceeEEE
Confidence 999983 43221 1 12468899999999 9988 6555433322222 2445666555 6555565
Q ss_pred CCCCCCC
Q 008457 526 PSKNSAS 532 (564)
Q Consensus 526 ~~~~~~~ 532 (564)
....|..
T Consensus 232 ~~~vPty 238 (295)
T d1inla_ 232 LGFMTTY 238 (295)
T ss_dssp EEECTTS
T ss_pred Eeeecee
Confidence 4444443
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.74 E-value=5.2e-05 Score=65.95 Aligned_cols=106 Identities=11% Similarity=0.107 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC---CCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.+.+|||+-||+|.++...+.++ ..+|+.+|.+..++...+++..... ....+...|+... +.......+||+|+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~-l~~~~~~~~fDlIF 120 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDF-LKQPQNQPHFDVVF 120 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHH-TTSCCSSCCEEEEE
T ss_pred ccceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhccccccccccccccccc-ccccccCCcccEEE
Confidence 57899999999999999999885 3489999999999999988765332 2344555554321 11122355799999
Q ss_pred EcccccCCChhHHHHHHHHHH--hccCCCeEEEEEe
Q 008457 152 MVFVLSAVSPEKMSLVLQNIK--KVLKPTGYVLFRD 185 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~--r~LkpgG~lii~~ 185 (564)
+-=-... ......+..+. .+|+++|.+++..
T Consensus 121 lDPPY~~---~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 121 LDPPFHF---NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp ECCCSSS---CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred echhHhh---hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 8433222 24556677765 4799999998853
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.71 E-value=1.8e-05 Score=69.61 Aligned_cols=111 Identities=13% Similarity=0.060 Sum_probs=67.7
Q ss_pred CCCeEEEeCCcccH----HHHHHHhc---C--CCEEEEEcCChhHHHHHHHHHHhcCCCCC-----------------C-
Q 008457 376 AGKKVLELGCGCGG----ICSMVAAG---S--ADLVVATDGDSIALDLLAQNVTANLKPPF-----------------L- 428 (564)
Q Consensus 376 ~~~~vLelG~G~G~----l~~~~~~~---~--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~-----------------~- 428 (564)
+..+|+..|||||- ++.++... . .-+|++||+|+.+++.++..+-....... .
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 44599999999994 33333321 1 12799999999999998854322111000 0
Q ss_pred ---------CceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 008457 429 ---------AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFI 497 (564)
Q Consensus 429 ---------~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~ 497 (564)
..+.....+-... ...+.++||+|++..++-+ .+....+++.+.+.| +|+| .++
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L-~pGG--------~L~ 168 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEK------QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLL-KPDG--------LLF 168 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCS------SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGE-EEEE--------EEE
T ss_pred eeehHHHHHHHHHHhhhhcccc------ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHh-CCCc--------EEE
Confidence 0011111111110 0123468999999998754 445688999999999 9988 666
Q ss_pred EEEe
Q 008457 498 LCHI 501 (564)
Q Consensus 498 ~~~~ 501 (564)
+.+.
T Consensus 169 lG~s 172 (193)
T d1af7a2 169 AGHS 172 (193)
T ss_dssp ECTT
T ss_pred EecC
Confidence 6533
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.69 E-value=9.1e-05 Score=69.35 Aligned_cols=140 Identities=19% Similarity=0.129 Sum_probs=86.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..++||-||-|.|++...+++.. ..+|+++|+++++++.+++....+.......++++..-| ..+-+. ....+
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~D-----a~~~l~-~~~~~ 179 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD-----GFEFLK-NHKNE 179 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSC-----HHHHHH-HCTTC
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEch-----HHHHHH-hCCCC
Confidence 45799999999998888887754 469999999999999999876554332233556655322 222232 34678
Q ss_pred ccEEEEeceeeCC---C--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh---HHHHHHHHcCCeEEEEcC
Q 008457 455 FEVILGTDVSYIP---E--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 455 fD~Ii~~d~~y~~---~--~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~g~~~~~~~~ 526 (564)
||+||. |+.-.. . .-..+++.+++.| +|+| +++.-...-..... .....+++. |..+..+.
T Consensus 180 yDvII~-D~~dp~~~~~~L~t~eFy~~~~~~L-~~~G--------i~v~q~~s~~~~~~~~~~i~~~l~~v-F~~v~~y~ 248 (312)
T d2b2ca1 180 FDVIIT-DSSDPVGPAESLFGQSYYELLRDAL-KEDG--------ILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQ 248 (312)
T ss_dssp EEEEEE-CCC-------------HHHHHHHHE-EEEE--------EEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEE
T ss_pred CCEEEE-cCCCCCCcchhhhhHHHHHHHHhhc-CCCc--------EEEEecCChHHhHHHHHHHHHHhhhc-cceEEEee
Confidence 999983 432211 1 2356688999999 9988 65554333333322 344455444 66666655
Q ss_pred CCCCCC
Q 008457 527 SKNSAS 532 (564)
Q Consensus 527 ~~~~~~ 532 (564)
...|..
T Consensus 249 ~~vPty 254 (312)
T d2b2ca1 249 SIVSTY 254 (312)
T ss_dssp EECTTS
T ss_pred eccCCc
Confidence 544544
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.66 E-value=7.7e-05 Score=66.47 Aligned_cols=110 Identities=13% Similarity=-0.032 Sum_probs=67.2
Q ss_pred CCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCC-eeEEEecCCcccccCCCCCCceeEEE
Q 008457 73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETR-VSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
..+..+|+|+|||.|.++..++...+...|.|+++--...+. -........+ +++...+. + ...+.+..|+|+
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~ni~~~~~~~d----v-~~l~~~~~D~vl 137 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGWNLVRLQSGVD----V-FFIPPERCDTLL 137 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTGGGEEEECSCC----T-TTSCCCCCSEEE
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Cccccccccccccchhhhh----H-HhcCCCcCCEEE
Confidence 377889999999999999999887656778888884321000 0000001112 22222211 1 123678899999
Q ss_pred EcccccCCC----hhHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 152 MVFVLSAVS----PEKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 152 ~~~vl~~~~----~~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
|-.+-..-. ......+|.-+.++|+|||.+++..+.+
T Consensus 138 cDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 138 CDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp ECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred eeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 976533111 1122356677789999999999987664
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=7.8e-05 Score=65.71 Aligned_cols=93 Identities=10% Similarity=0.116 Sum_probs=67.7
Q ss_pred CCCeEEEeCCcccHHHHHHHh-c-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 376 AGKKVLELGCGCGGICSMVAA-G-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~-~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.+.+|+|+|||.| ++++.++ . ...+|+++|.+..-+..++.-+..-++ .++.+..-...+. ....
T Consensus 65 ~~~~ilDiGsGaG-~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L----~nv~v~~~R~E~~--------~~~~ 131 (207)
T d1jsxa_ 65 QGERFIDVGTGPG-LPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL----ENIEPVQSRVEEF--------PSEP 131 (207)
T ss_dssp CSSEEEEETCTTT-TTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC----SSEEEEECCTTTS--------CCCS
T ss_pred cCCceeeeeccCC-ceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC----cceeeeccchhhh--------cccc
Confidence 5679999999998 6665555 3 346999999999888888887766555 3566665444322 1234
Q ss_pred CccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 454 GFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 454 ~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+||+|++-- ....+.++..+..++ +++|
T Consensus 132 ~fD~V~sRA----~~~~~~ll~~~~~~l-~~~g 159 (207)
T d1jsxa_ 132 PFDGVISRA----FASLNDMVSWCHHLP-GEQG 159 (207)
T ss_dssp CEEEEECSC----SSSHHHHHHHHTTSE-EEEE
T ss_pred ccceehhhh----hcCHHHHHHHHHHhc-CCCc
Confidence 799987643 356889999999999 8877
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=7.3e-05 Score=69.07 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=64.6
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
++.+.+.....++..|||+|+|+|.++..++..+ ++|+++++|+.+++.+++....+... .++.+..-|+-+.+.
T Consensus 10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~---~~~~~i~~D~l~~~~- 84 (278)
T d1zq9a1 10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVA---SKLQVLVGDVLKTDL- 84 (278)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTG---GGEEEEESCTTTSCC-
T ss_pred HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccc---cchhhhHHHHhhhhh-
Confidence 3444444455678899999999999999988775 68999999999999999987654332 567777777654421
Q ss_pred hhhhhhcCCCccEEEEeceeeCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIP 467 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~ 467 (564)
..++.||+ .+.|+.
T Consensus 85 --------~~~~~vV~-NLPY~I 98 (278)
T d1zq9a1 85 --------PFFDTCVA-NLPYQI 98 (278)
T ss_dssp --------CCCSEEEE-ECCGGG
T ss_pred --------hhhhhhhc-chHHHH
Confidence 23556664 567765
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.0001 Score=68.51 Aligned_cols=140 Identities=19% Similarity=0.113 Sum_probs=87.1
Q ss_pred CCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..++||=||-|.|+++..++.. ...+|+++|+++++++.+++-...+.......++++..-|. ..-+. ....+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da-----~~~l~-~~~~~ 151 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG-----FEFMK-QNQDA 151 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH-----HHHHH-TCSSC
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccH-----HHHHh-cCCCC
Confidence 4579999999999888887765 46799999999999999998765432222235676664432 22222 24568
Q ss_pred ccEEEEeceeeCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChh---HHHHHHHHcCCeEEEEcC
Q 008457 455 FEVILGTDVSYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDKWP 526 (564)
Q Consensus 455 fD~Ii~~d~~y~~~-----~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~g~~~~~~~~ 526 (564)
||+|+. |+.-... .-..+++.+++.| +++| ++++-......... .....+++ .|..+..+.
T Consensus 152 yDvIi~-D~~~p~~~~~~L~t~eF~~~~~~~L-~~~G--------i~v~q~~s~~~~~~~~~~~~~tl~~-~F~~v~~y~ 220 (285)
T d2o07a1 152 FDVIIT-DSSDPMGPAESLFKESYYQLMKTAL-KEDG--------VLCCQGECQWLHLDLIKEMRQFCQS-LFPVVAYAY 220 (285)
T ss_dssp EEEEEE-ECC-----------CHHHHHHHHHE-EEEE--------EEEEEEECTTTCHHHHHHHHHHHHH-HCSEEEEEE
T ss_pred CCEEEE-cCCCCCCcccccccHHHHHHHHHhc-CCCC--------eEEEeccchhhhHHHHHHHHHHHHh-cCCeeeEEe
Confidence 999984 5422111 1235688999999 9988 66665444333332 33444544 366666654
Q ss_pred CCCCCC
Q 008457 527 SKNSAS 532 (564)
Q Consensus 527 ~~~~~~ 532 (564)
...|.-
T Consensus 221 ~~vP~~ 226 (285)
T d2o07a1 221 CTIPTY 226 (285)
T ss_dssp EECTTS
T ss_pred eeeeec
Confidence 434443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.58 E-value=0.00049 Score=63.83 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhc
Q 008457 362 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTAN 422 (564)
Q Consensus 362 ~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n 422 (564)
..|.+++..... .+|..|||--||+| -.+.++.....+.+++|++++.++.+++++...
T Consensus 194 ~~L~~~~I~~~s-~~gdiVLDpF~GSG-TT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 194 AAVIERLVRALS-HPGSTVLDFFAGSG-VTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHHHS-CTTCEEEETTCTTC-HHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred hhHHHHHHHhhc-CCCCEEEecCCCCc-HHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 445655555322 38889999999999 666666667789999999999999999988753
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.52 E-value=3.9e-06 Score=76.61 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=58.4
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccc
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI 444 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~ 444 (564)
.+.+.+.....++.+|||||||+|.++..++.. +.+|+++|+|+.+++.++++... ..++.+..-|..+.
T Consensus 18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~------~~n~~ii~~D~l~~--- 87 (245)
T d1yuba_ 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKL------NTRVTLIHQDILQF--- 87 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTT------CSEEEECCSCCTTT---
T ss_pred HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhh------ccchhhhhhhhhcc---
Confidence 334444445557889999999999999888776 56899999999888877654321 13455554444332
Q ss_pred hhhhhhcCCCccEEEEeceeeCCC
Q 008457 445 EAIKEENNEGFEVILGTDVSYIPE 468 (564)
Q Consensus 445 ~~~~~~~~~~fD~Ii~~d~~y~~~ 468 (564)
+++...++.|+ +.+.|+..
T Consensus 88 ----~~~~~~~~~vv-~NLPY~Is 106 (245)
T d1yuba_ 88 ----QFPNKQRYKIV-GNIPYHLS 106 (245)
T ss_dssp ----TCCCSSEEEEE-EECCSSSC
T ss_pred ----ccccceeeeEe-eeeehhhh
Confidence 22333445444 67778765
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.00081 Score=57.73 Aligned_cols=145 Identities=12% Similarity=0.181 Sum_probs=90.6
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
.|+..|.+...+..-+.++.+||||||+.|+.+-.++.. ....|+++|+.+. +. ...+.+...
T Consensus 5 RaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~----i~~~~~~~~ 69 (180)
T d1ej0a_ 5 RAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DP----IVGVDFLQG 69 (180)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CC----CTTEEEEES
T ss_pred HHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cc----cCCceEeec
Confidence 466777776666555567889999999999888777754 3468999998651 11 234555555
Q ss_pred ecCCCccchhh-hhhcCCCccEEEEeceeeCCC------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 437 EWGNRDHIEAI-KEENNEGFEVILGTDVSYIPE------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 437 ~w~~~~~~~~~-~~~~~~~fD~Ii~~d~~y~~~------------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
+..+....... ......++|+|+ +|.-.+.. .....+..+.++| +++| .|++=. -+
T Consensus 70 d~~~~~~~~~~~~~~~~~~~DlVl-SD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~L-k~gG--------~fV~K~-F~ 138 (180)
T d1ej0a_ 70 DFRDELVMKALLERVGDSKVQVVM-SDMAPNMSGTPAVDIPRAMYLVELALEMCRDVL-APGG--------SFVVKV-FQ 138 (180)
T ss_dssp CTTSHHHHHHHHHHHTTCCEEEEE-ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE-EEEE--------EEEEEE-ES
T ss_pred ccccchhhhhhhhhccCcceeEEE-ecccchhcccchhHHHHHHHHHHHHHHhhhhcc-CCCC--------cEEEEE-ec
Confidence 55443222222 124566899987 56554432 3445567777888 8887 665543 34
Q ss_pred cCChhHHHHHHHHcCCeEEEEcCCCCC
Q 008457 504 QVDEPSMLSAATQCGFRLVDKWPSKNS 530 (564)
Q Consensus 504 ~~~~~~~~~~~~~~g~~~~~~~~~~~~ 530 (564)
......|+..+. .-|+-++++...++
T Consensus 139 g~~~~~l~~~l~-~~F~~V~~~KP~aS 164 (180)
T d1ej0a_ 139 GEGFDEYLREIR-SLFTKVKVRKPDSS 164 (180)
T ss_dssp STTHHHHHHHHH-HHEEEEEEECCTTS
T ss_pred CccHHHHHHHHH-hhcCEEEEECCCCc
Confidence 455556776664 45666666644333
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.44 E-value=0.00015 Score=72.13 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=87.4
Q ss_pred ccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCC-------------CcEEEEEeCChHHHHHHHhcccc
Q 008457 55 RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-------------DVFVYACDFSPRAVNLVMTHKDF 121 (564)
Q Consensus 55 ~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-------------~~~v~~iD~s~~~l~~a~~~~~~ 121 (564)
.|+. .+.+...+.+++.+.++.+|+|-.||+|.+...+.++.. ...++|+|+++.+...|+-...-
T Consensus 143 ~f~T-P~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l 221 (425)
T d2okca1 143 QYFT-PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL 221 (425)
T ss_dssp GGCC-CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred hhcc-chhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence 3554 445556667778778899999999999999987766411 13499999999999988865422
Q ss_pred c---CCCeeEEEecCCcccccCCCCCCceeEEEEcccccCC---------------ChhHHHHHHHHHHhccCCCeEEEE
Q 008457 122 T---ETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAV---------------SPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 122 ~---~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~---------------~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
. .........|.... .+..+||+|+++=-+... ....-..++..+.+.|++||.+.+
T Consensus 222 ~g~~~~~~~i~~~d~l~~-----~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~i 296 (425)
T d2okca1 222 HGIGTDRSPIVCEDSLEK-----EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV 296 (425)
T ss_dssp TTCCSSCCSEEECCTTTS-----CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCccccceeecCchhhh-----hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEE
Confidence 1 12345666666432 256789999996544211 011234699999999999999887
Q ss_pred Eec
Q 008457 184 RDY 186 (564)
Q Consensus 184 ~~~ 186 (564)
..+
T Consensus 297 I~p 299 (425)
T d2okca1 297 VLP 299 (425)
T ss_dssp EEE
T ss_pred Eec
Confidence 644
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.26 E-value=0.00016 Score=64.82 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=37.4
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHH
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDL 414 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~ 414 (564)
++++|.......++.+|||.|||+|.+...+... ....++++|+++.++..
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~ 59 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL 59 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh
Confidence 4666666555557889999999999876665543 34689999999865543
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.00099 Score=62.11 Aligned_cols=118 Identities=11% Similarity=0.074 Sum_probs=78.2
Q ss_pred hhccCCCCCeEEEEcCCccccHHHHHHh-CCCcEEEEEeCChHHHHHHHhcccccC-CCeeEEEecCCcccccCCCCCCc
Q 008457 69 RYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~~iD~s~~~l~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
..+.+.++.+|||+.||.|.-+.+++.. .+..+++++|+++.-++.++++....+ .++.+...|........+ ..+.
T Consensus 88 ~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~-~~~~ 166 (293)
T d2b9ea1 88 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP-RYHE 166 (293)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG-GGTT
T ss_pred cccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccc-ccce
Confidence 3456688999999999999999888865 456799999999999988888765544 567787777754322101 2357
Q ss_pred eeEEEEcc------cccCCC---------h-------hHHHHHHHHHHhccCCCeEEEEEecCC
Q 008457 147 IDIVTMVF------VLSAVS---------P-------EKMSLVLQNIKKVLKPTGYVLFRDYAI 188 (564)
Q Consensus 147 fD~V~~~~------vl~~~~---------~-------~~~~~~l~~~~r~LkpgG~lii~~~~~ 188 (564)
||.|++-. ++..-+ . .....++..+. .|+|||.|+.++-..
T Consensus 167 fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred eeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 99999831 111110 0 01223444455 479999988776443
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.10 E-value=0.00034 Score=67.50 Aligned_cols=104 Identities=13% Similarity=-0.009 Sum_probs=75.3
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccC----------------CCeeEEEecCCccc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE----------------TRVSTFVCDLISDD 137 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~----------------~~i~~~~~d~~~~~ 137 (564)
.++.+|||..||+|..+..++.+.+..+|++.|+|+.+++.++++...++ ..+.+.+.|+....
T Consensus 44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 36789999999999999988887666689999999999999998764322 12344455542211
Q ss_pred ccCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 138 LSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 138 ~~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
. -....||+|.+-- + -.+..+|..+.+.++.||.|.++..
T Consensus 124 ~---~~~~~fDvIDiDP----f--Gs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 124 A---ERHRYFHFIDLDP----F--GSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp H---HSTTCEEEEEECC----S--SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred H---hhcCcCCcccCCC----C--CCcHHHHHHHHHHhccCCEEEEEec
Confidence 1 1245799888732 1 1345689999999999999999743
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.09 E-value=0.017 Score=52.07 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHH
Q 008457 362 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVT 420 (564)
Q Consensus 362 ~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~ 420 (564)
..|.+++..... .+|..|||--||+| -.+.+|.....+.+++|++++.++.++++++
T Consensus 199 ~~L~~~lI~~~s-~~gd~VlDpF~GSG-TT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRASS-NPNDLVLDCFMGSG-TTAIVAKKLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHHC-CTTCEEEESSCTTC-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhC-CCCCEEEECCCCch-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence 345555554322 37889999999999 6677777778899999999999999998875
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.04 E-value=0.00093 Score=57.35 Aligned_cols=128 Identities=13% Similarity=0.176 Sum_probs=79.0
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
...++..++|..+|.|+-+..++... .+|+++|.++++++.+++. . ..++.+....+.+. .+.+..+..
T Consensus 15 ~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~-----~---~~~~~~~~~~f~~~--~~~l~~~~~ 83 (182)
T d1wg8a2 15 AVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGL-----H---LPGLTVVQGNFRHL--KRHLAALGV 83 (182)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-----C---CTTEEEEESCGGGH--HHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhc-----c---ccceeEeehHHHHH--HHHHHHcCC
Confidence 34588899999999999988888764 5899999999999888752 1 13555555444321 122223445
Q ss_pred CCccEEEEeceeeCCC----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEE
Q 008457 453 EGFEVILGTDVSYIPE----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV 522 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~----------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~ 522 (564)
+++|.|+ .|+-+... .....+.....+| +++| ++.+.... ......+...+++.+++..
T Consensus 84 ~~vdgIl-~DLGvSs~qld~~~re~~~~~~~L~~~~~~l-k~gg--------~~~ii~fh-s~Ed~ivk~~~~e~~~k~i 152 (182)
T d1wg8a2 84 ERVDGIL-ADLGVSSFHLDDPSDELNALKEFLEQAAEVL-APGG--------RLVVIAFH-SLEDRVVKRFLRESGLKVL 152 (182)
T ss_dssp SCEEEEE-EECSCCHHHHHCGGTHHHHHHHHHHHHHHHE-EEEE--------EEEEEECS-HHHHHHHHHHHHHHCSEES
T ss_pred CccCEEE-EEccCCHHHhhcchHHHHHHHHHHHHHHhhh-CCCC--------eEEEEecc-cchhHHHHHHHhhccceec
Confidence 6899887 46644322 2334566777788 8866 44333222 2222234444556676654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00022 Score=64.92 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=54.8
Q ss_pred CCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 373 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
...++..|||+|||+|.++..++.. +++|+++|+|+.+++.++.....+ .++.+..-|.-+.+ ...+.+...
T Consensus 18 ~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~~------~~~~ii~~D~l~~~-~~~~~~~~~ 89 (252)
T d1qyra_ 18 NPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFLG------PKLTIYQQDAMTFN-FGELAEKMG 89 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTTG------GGEEEECSCGGGCC-HHHHHHHHT
T ss_pred CCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhhc------cchhHHhhhhhhhc-ccccccccC
Confidence 4457889999999999999888765 568999999999999888643221 34555544332221 111111122
Q ss_pred CCccEEEEeceeeCCC
Q 008457 453 EGFEVILGTDVSYIPE 468 (564)
Q Consensus 453 ~~fD~Ii~~d~~y~~~ 468 (564)
.+ +.+.+.+.|+..
T Consensus 90 ~~--~~vvgNlPY~Is 103 (252)
T d1qyra_ 90 QP--LRVFGNLPYNIS 103 (252)
T ss_dssp SC--EEEEEECCTTTH
T ss_pred CC--eEEEecchHHHH
Confidence 23 334467788765
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.91 E-value=0.0029 Score=60.02 Aligned_cols=163 Identities=13% Similarity=0.208 Sum_probs=92.4
Q ss_pred CCCeEEEEcCCccccHHHHH--------Hh--------CCCcEEEEEeCChHHHHHHHhcccc-cC--CCe--eEEEecC
Q 008457 75 GRKDVLEVGCGAGNTIFPLI--------AA--------YPDVFVYACDFSPRAVNLVMTHKDF-TE--TRV--STFVCDL 133 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~--------~~--------~~~~~v~~iD~s~~~l~~a~~~~~~-~~--~~i--~~~~~d~ 133 (564)
...+|.|+||.+|..+..+. +. .|..+|..-|+-..--...-+.... .. .++ ..+.+.+
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 44789999999998873221 11 2456788888655433333222211 11 111 1122233
Q ss_pred CcccccCCCCCCceeEEEEcccccCCCh-------------------------------hHHHHHHHHHHhccCCCeEEE
Q 008457 134 ISDDLSRQISPSSIDIVTMVFVLSAVSP-------------------------------EKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 134 ~~~~~~~~~~~~~fD~V~~~~vl~~~~~-------------------------------~~~~~~l~~~~r~LkpgG~li 182 (564)
- ..=||+++.+++++..++||++. .|...+|+.=.+-|+|||.++
T Consensus 131 Y----~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mv 206 (359)
T d1m6ex_ 131 Y----GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV 206 (359)
T ss_dssp S----SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred h----hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 2 22368999999999999999851 255678888889999999999
Q ss_pred EEecCCCchhhhh-----hcc-----cccccccceee----cCCCceeeccCHHHHHHHHHhCC-CcEEEeeee
Q 008457 183 FRDYAIGDLAQER-----LTG-----KDQKISENFYV----RGDGTRAFYFSNDFLTSLFKENG-FDVEELGLC 241 (564)
Q Consensus 183 i~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~ 241 (564)
+...+..+..... ... +..-..++... ..-....|+.+.++++..+++.| |.+.++...
T Consensus 207 l~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~ 280 (359)
T d1m6ex_ 207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred EEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEee
Confidence 9876643311000 000 00000000000 00113345668999999998876 677665543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.001 Score=67.65 Aligned_cols=129 Identities=13% Similarity=0.091 Sum_probs=82.6
Q ss_pred cccccccchhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHh----CC--------------CcEEEEEeCChHHHHHH
Q 008457 54 DRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA----YP--------------DVFVYACDFSPRAVNLV 115 (564)
Q Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~----~~--------------~~~v~~iD~s~~~l~~a 115 (564)
..||.+ ..+...+.+++.+.++.+|+|-.||+|.++....++ .. ...++|+|+++.+...|
T Consensus 144 GqfyTP-~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 144 GQYFTP-RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp -CCCCC-HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred chhccc-cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 345544 445566677788788999999999999998766553 11 12589999999999888
Q ss_pred HhcccccCC------CeeEEEecCCcccccCCCCCCceeEEEEcccccCC-----------C-hhHHHHHHHHHHhccCC
Q 008457 116 MTHKDFTET------RVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAV-----------S-PEKMSLVLQNIKKVLKP 177 (564)
Q Consensus 116 ~~~~~~~~~------~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~-----------~-~~~~~~~l~~~~r~Lkp 177 (564)
+-...-.+. ...+...+....+. ....+||+|+++=-+.-- + ...-..+++.+.+.|+|
T Consensus 223 ~~nl~l~~~~~~i~~~~~~~~~~~l~~d~---~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~ 299 (524)
T d2ar0a1 223 LMNCLLHDIEGNLDHGGAIRLGNTLGSDG---ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP 299 (524)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHHH---HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE
T ss_pred HHHHHhhcccccccccchhhhhhhhhhcc---cccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc
Confidence 764321111 11233343332211 134679999996533210 0 11234699999999999
Q ss_pred CeEEEEEec
Q 008457 178 TGYVLFRDY 186 (564)
Q Consensus 178 gG~lii~~~ 186 (564)
||++.+..+
T Consensus 300 gGr~aiIlP 308 (524)
T d2ar0a1 300 GGRAAVVVP 308 (524)
T ss_dssp EEEEEEEEE
T ss_pred cCcEEEEEe
Confidence 999888654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.83 E-value=0.0027 Score=56.24 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=68.7
Q ss_pred ccceechhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCce
Q 008457 353 TGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKL 431 (564)
Q Consensus 353 ~G~~~W~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i 431 (564)
.|..+-.++..|.+...+. .+.++.+|+|||||.|+-+-.++.+. ...|.++|+--.. ... .+
T Consensus 44 ~~~~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~----------~e~-----P~ 107 (257)
T d2p41a1 44 DHHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG----------HEE-----PI 107 (257)
T ss_dssp SSCCSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT----------SCC-----CC
T ss_pred cCCCcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc----------ccC-----Cc
Confidence 3556668888887766664 56677899999999998888777664 3478888872110 000 01
Q ss_pred EEEEeecCCC--ccchhhhhhcCCCccEEEEeceeeCCC-------ChHHHHHHHHHHhhccCC
Q 008457 432 ITKRLEWGNR--DHIEAIKEENNEGFEVILGTDVSYIPE-------AILPLFATAKELTASSNK 486 (564)
Q Consensus 432 ~~~~l~w~~~--~~~~~~~~~~~~~fD~Ii~~d~~y~~~-------~~~~l~~~~~~ll~~~~g 486 (564)
....+.|+-. .....+..+++..+|+|+ ||+--+.. ..-.+++.+..+| +++|
T Consensus 108 ~~~~~~~ni~~~~~~~dv~~l~~~~~D~vl-cDm~ess~~~~vd~~Rtl~vLela~~wL-k~gg 169 (257)
T d2p41a1 108 PMSTYGWNLVRLQSGVDVFFIPPERCDTLL-CDIGESSPNPTVEAGRTLRVLNLVENWL-SNNT 169 (257)
T ss_dssp CCCSTTGGGEEEECSCCTTTSCCCCCSEEE-ECCCCCCSSHHHHHHHHHHHHHHHHHHC-CTTC
T ss_pred cccccccccccchhhhhHHhcCCCcCCEEE-eeCCCCCCCchhhhhhHHHHHHHHHHHc-ccCC
Confidence 1111112100 001112234677999887 67643311 2235677778899 8877
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.79 E-value=0.0015 Score=61.40 Aligned_cols=130 Identities=19% Similarity=0.119 Sum_probs=78.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.+|.+|||+.||.|+=+..++.. ....|++.|.++.=+..+++|+...+.. ++.+. +.+.... +...
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~----~i~~~---~~d~~~~----~~~~ 183 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL----NVILF---HSSSLHI----GELN 183 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC----SEEEE---SSCGGGG----GGGC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh----ccccc---ccccccc----cccc
Confidence 37889999999999877666654 3458999999999999999999987763 33322 1111111 2345
Q ss_pred CCccEEEEecee--------------eC--CC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe-eccCChh
Q 008457 453 EGFEVILGTDVS--------------YI--PE-------AILPLFATAKELTASSNKSLREDQQPAFILCHI-FRQVDEP 508 (564)
Q Consensus 453 ~~fD~Ii~~d~~--------------y~--~~-------~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~-~r~~~~~ 508 (564)
..||.|+. |+. +. .+ .-..++.....+| +|+| ..+|.+.. ...+.+.
T Consensus 184 ~~fD~ILv-DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l-k~gG-------~lVYsTCSl~~eENE~ 254 (313)
T d1ixka_ 184 VEFDKILL-DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL-KPGG-------ILVYSTCSLEPEENEF 254 (313)
T ss_dssp CCEEEEEE-ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHE-EEEE-------EEEEEESCCCGGGTHH
T ss_pred ccccEEEE-ccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhhee-CCCc-------EEEEeeccCChHhHHH
Confidence 68999883 221 11 11 2234455666677 7876 23333322 3344443
Q ss_pred HHHHHHHHcCCeEEEE
Q 008457 509 SMLSAATQCGFRLVDK 524 (564)
Q Consensus 509 ~~~~~~~~~g~~~~~~ 524 (564)
-....++..++++..+
T Consensus 255 VV~~~L~~~~~~~~~~ 270 (313)
T d1ixka_ 255 VIQWALDNFDVELLPL 270 (313)
T ss_dssp HHHHHHHHSSEEEECC
T ss_pred HHHHHHhcCCCEEeec
Confidence 3444455677776654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.79 E-value=0.0015 Score=64.58 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=73.5
Q ss_pred HHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcC--------------CCEEEEEcCChhHHHHHHHHHHhcCCCCCCC
Q 008457 364 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--------------ADLVVATDGDSIALDLLAQNVTANLKPPFLA 429 (564)
Q Consensus 364 l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~--------------~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~ 429 (564)
++++|........+.+|+|-.||+|++...+.... ...+.+.|+++.+..+++.|+..++......
T Consensus 150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 34454443233467899999999998877665431 1249999999999999999999987653222
Q ss_pred ceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCC------------------ChHHHHHHHHHHhhccCC
Q 008457 430 KLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE------------------AILPLFATAKELTASSNK 486 (564)
Q Consensus 430 ~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~------------------~~~~l~~~~~~ll~~~~g 486 (564)
.+ ..-|.-. .....+||+||++.+. ... ....++..+..+| +++|
T Consensus 230 ~i--~~~d~l~--------~~~~~~fD~Ii~NPPf-g~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~L-k~~G 292 (425)
T d2okca1 230 PI--VCEDSLE--------KEPSTLVDVILANPPF-GTRPAGSVDINRPDFYVETKNNQLNFLQHMMLML-KTGG 292 (425)
T ss_dssp SE--EECCTTT--------SCCSSCEEEEEECCCS-SCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHE-EEEE
T ss_pred ee--ecCchhh--------hhcccccceEEecCCC-CCCccccchhhhhhcccccccHHHHHHHHHHHhc-CCCC
Confidence 22 2222211 1234689999977654 211 1245888889999 8877
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.0012 Score=61.25 Aligned_cols=75 Identities=20% Similarity=0.161 Sum_probs=54.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcC-CCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE 453 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~ 453 (564)
.++.+|||+.||.|+=+..++... ..+|++.|.++.=+..++.|+...+.. .+.+...+.. . ......+
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~----~~~~~~~~~~---~---~~~~~~~ 170 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK----ATVKQGDGRY---P---SQWCGEQ 170 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC----CEEEECCTTC---T---HHHHTTC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc----ceeeeccccc---c---chhcccc
Confidence 478899999999998888777654 368999999999999999999987763 2333222111 1 1123456
Q ss_pred CccEEE
Q 008457 454 GFEVIL 459 (564)
Q Consensus 454 ~fD~Ii 459 (564)
.||.|+
T Consensus 171 ~fd~IL 176 (284)
T d1sqga2 171 QFDRIL 176 (284)
T ss_dssp CEEEEE
T ss_pred cccEEE
Confidence 899998
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.69 E-value=0.00098 Score=56.66 Aligned_cols=100 Identities=16% Similarity=0.060 Sum_probs=65.8
Q ss_pred cCCCCCeEEEEcCC-ccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEE
Q 008457 72 SGAGRKDVLEVGCG-AGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150 (564)
Q Consensus 72 ~~~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V 150 (564)
...++.+||-+|+| .|.++..+++.. +++|+++|.+++.++.|++.... .++... ...+.... ..+.+|+|
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~-----~~i~~~-~~~~~~~~-~~~~~d~v 95 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGAD-----HYIATL-EEGDWGEK-YFDTFDLI 95 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCS-----EEEEGG-GTSCHHHH-SCSCEEEE
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCc-----EEeecc-chHHHHHh-hhcccceE
Confidence 34789999999999 478888887764 78999999999999999875321 122111 01111101 24579988
Q ss_pred EEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 151 TMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 151 ~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
+....-.+-. .+....+.|+|+|++++.-
T Consensus 96 i~~~~~~~~~------~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 96 VVCASSLTDI------DFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EECCSCSTTC------CTTTGGGGEEEEEEEEECC
T ss_pred EEEecCCccc------hHHHHHHHhhccceEEEec
Confidence 8754322210 2445788999999998854
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.25 E-value=0.0069 Score=51.86 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=66.6
Q ss_pred ccCCCCCeEEEEcCCc-cccHHHHHHhCCCc-EEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc-------cCC
Q 008457 71 FSGAGRKDVLEVGCGA-GNTIFPLIAAYPDV-FVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL-------SRQ 141 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~-------~~~ 141 (564)
....++.+||-+|||. |.++..+++.. |+ +|+++|.+++.++.|++.... .+ .+....+. ..-
T Consensus 24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~-----~v--i~~~~~~~~~~~~~i~~~ 95 (182)
T d1vj0a2 24 PESFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEIGAD-----LT--LNRRETSVEERRKAIMDI 95 (182)
T ss_dssp SSCCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHHTTCS-----EE--EETTTSCHHHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCccchhheeccccc-ccccccccccccccccccccccce-----EE--EeccccchHHHHHHHHHh
Confidence 3447899999999985 88888888875 55 899999999999999875321 11 12211111 000
Q ss_pred CCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 142 ISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 142 ~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.....+|+|+....- ...++...+.|+|||++++.-
T Consensus 96 ~~~~g~Dvvid~vG~--------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 96 THGRGADFILEATGD--------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp TTTSCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred hCCCCceEEeecCCc--------hhHHHHHHHHhcCCCEEEEEe
Confidence 123469998864321 125778889999999998753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.13 E-value=0.0066 Score=52.64 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=70.5
Q ss_pred ccCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC---C-CCCC
Q 008457 71 FSGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR---Q-ISPS 145 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~---~-~~~~ 145 (564)
....++.+||-+|||. |..+..+++.....+|+++|.++..++.|++.... .. .+....++.. . ....
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~------~~-~~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE------IA-DLSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE------EE-ETTSSSCHHHHHHHHHSSS
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc------EE-EeCCCcCHHHHHHHHhCCC
Confidence 3458899999999998 66777777776566999999999999999876421 11 1111111100 0 0234
Q ss_pred ceeEEEEccccc------C-CChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 146 SIDIVTMVFVLS------A-VSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 146 ~fD~V~~~~vl~------~-~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.+|+++-..... + +........++.+.+.++|||.+.+.-
T Consensus 94 g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 94 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 689988743311 1 001123468999999999999998853
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.013 Score=54.30 Aligned_cols=77 Identities=17% Similarity=0.075 Sum_probs=56.0
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc--CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcC
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN 452 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~--~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~ 452 (564)
.+|.+|||++||.|+=+..++.. ...+|++.|.++.=++.+++|+...+. ..+.+..-|....... .-..
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~----~~~~~~~~d~~~~~~~----~~~~ 164 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV----SCCELAEEDFLAVSPS----DPRY 164 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC----CSEEEEECCGGGSCTT----CGGG
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc----cceeeeehhhhhhccc----cccc
Confidence 47889999999999877766653 456899999999999999999999876 4566655544322111 0112
Q ss_pred CCccEEE
Q 008457 453 EGFEVIL 459 (564)
Q Consensus 453 ~~fD~Ii 459 (564)
++||.|+
T Consensus 165 ~~fD~VL 171 (293)
T d2b9ea1 165 HEVHYIL 171 (293)
T ss_dssp TTEEEEE
T ss_pred ceeeEEe
Confidence 5799988
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.09 E-value=0.013 Score=49.43 Aligned_cols=100 Identities=18% Similarity=0.157 Sum_probs=67.0
Q ss_pred cCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCccccc------CCCCC
Q 008457 72 SGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLS------RQISP 144 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~------~~~~~ 144 (564)
...++.+||-+|||. |.++..+++.. +++|+++|.+++-++.|++.... ..+ ..+....+.. .....
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~----~~~-~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGAD----VTL-VVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCS----EEE-ECCTTTSCHHHHHHHHHHHSS
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCc----EEE-eccccccccchhhhhhhcccc
Confidence 447899999999994 77777777775 78999999999999999875431 111 1111111100 00013
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
..+|+|+-+.. -...+....+.|+|+|++++.-
T Consensus 97 ~g~D~vid~~g--------~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 97 DLPNVTIDCSG--------NEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SCCSEEEECSC--------CHHHHHHHHHHSCTTCEEEECS
T ss_pred cCCceeeecCC--------ChHHHHHHHHHHhcCCceEEEe
Confidence 46898887432 1246788889999999998854
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0044 Score=62.74 Aligned_cols=148 Identities=9% Similarity=-0.098 Sum_probs=83.9
Q ss_pred HHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhc----C---------------CCEEEEEcCChhHHHHHHHHHHhcCCC
Q 008457 365 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAG----S---------------ADLVVATDGDSIALDLLAQNVTANLKP 425 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~----~---------------~~~v~~tD~~~~~l~~~~~n~~~n~~~ 425 (564)
+++|........+.+|+|-.||+|++...+... . ...+.+.|+++.+...++.|+...+..
T Consensus 153 v~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~ 232 (524)
T d2ar0a1 153 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 232 (524)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred hHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc
Confidence 444444323346779999999999887665432 1 125899999999999999999887753
Q ss_pred CCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCC--------------CChHHHHHHHHHHhhccCCCCCCC
Q 008457 426 PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP--------------EAILPLFATAKELTASSNKSLRED 491 (564)
Q Consensus 426 ~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--------------~~~~~l~~~~~~ll~~~~g~~~~~ 491 (564)
... .....+.+++... . ......+||+||++.+.-.. ..--.++..+.+.| +++|
T Consensus 233 ~~i--~~~~~~~~~~~l~-~--d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L-k~gG----- 301 (524)
T d2ar0a1 233 GNL--DHGGAIRLGNTLG-S--DGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL-HPGG----- 301 (524)
T ss_dssp CBG--GGTBSEEESCTTS-H--HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHE-EEEE-----
T ss_pred ccc--cccchhhhhhhhh-h--cccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhc-cccC-----
Confidence 210 0000111111100 0 01234589999977644111 11234788888999 9887
Q ss_pred CCcEEEEEEee----ccCChhHHHHHHHHcCCeEEEEcCC
Q 008457 492 QQPAFILCHIF----RQVDEPSMLSAATQCGFRLVDKWPS 527 (564)
Q Consensus 492 ~~~~~~~~~~~----r~~~~~~~~~~~~~~g~~~~~~~~~ 527 (564)
++.+..+. +......+.+.+.+. +.+..|...
T Consensus 302 ---r~aiIlP~~~Lf~~~~~~~iR~~Ll~~-~~i~aII~L 337 (524)
T d2ar0a1 302 ---RAAVVVPDNVLFEGGKGTDIRRDLMDK-CHLHTILRL 337 (524)
T ss_dssp ---EEEEEEEHHHHHCCTHHHHHHHHHHHH-EEEEEEEEC
T ss_pred ---cEEEEEehHHhhhhhhhHHHHHHHHHc-CCceEEEEC
Confidence 43333333 222223455555443 355555433
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.90 E-value=0.0042 Score=55.29 Aligned_cols=115 Identities=13% Similarity=0.125 Sum_probs=61.5
Q ss_pred cceechhHHHHH--HHHhcCCCCCCCCeEEEeCCcccHHHHHHHh----c-CCCEEEEEcCChhHHHHHHHHHHhcCCCC
Q 008457 354 GLMLWESAHLMA--AVLARNPTIVAGKKVLELGCGCGGICSMVAA----G-SADLVVATDGDSIALDLLAQNVTANLKPP 426 (564)
Q Consensus 354 G~~~W~~~~~l~--~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~----~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~ 426 (564)
|.++|....-++ .-+... .+.++|||+|++.|+-+.+.+. . ..++|+++|+++...... ..
T Consensus 59 G~p~~k~p~d~~~~~eli~~---~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~---- 126 (232)
T d2bm8a1 59 GLRMLKDPDTQAVYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----AS---- 126 (232)
T ss_dssp TEECCSCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GG----
T ss_pred ceecccCHHHHHHHHHHHHH---hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hc----
Confidence 667775444333 222221 2567999999999954443332 1 246999999976432211 11
Q ss_pred CCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 427 FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 427 ~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
...++.+...|-.+...+ ..+....+|+|+- |--+.....-.-+ .+..+| +++|
T Consensus 127 ~~~~I~~i~gDs~~~~~~---~~l~~~~~dlIfI-D~~H~~~~v~~~~-~~~~lL-k~GG 180 (232)
T d2bm8a1 127 DMENITLHQGDCSDLTTF---EHLREMAHPLIFI-DNAHANTFNIMKW-AVDHLL-EEGD 180 (232)
T ss_dssp GCTTEEEEECCSSCSGGG---GGGSSSCSSEEEE-ESSCSSHHHHHHH-HHHHTC-CTTC
T ss_pred cccceeeeecccccHHHH---HHHHhcCCCEEEE-cCCcchHHHHHHH-HHhccc-CcCC
Confidence 125677776665443333 3344456787764 3222222111112 245788 8887
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=95.77 E-value=0.0022 Score=57.52 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=60.7
Q ss_pred CCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCC-----CCceEEEEeecCCCccchhhhhhc
Q 008457 377 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF-----LAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~-----~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
..+|||+-||.|.-+..++..+ ++|+++|.+|.+..+++.++........ ..++.+..-| ..+.+.. .
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~G-~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D-----s~~~L~~-~ 161 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS-----SLTALTD-I 161 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC-----HHHHSTT-C
T ss_pred CCEEEECCCcccHHHHHHHhCC-CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc-----HHHHHhc-c
Confidence 3489999999998888877765 5799999999998888887765432211 1234444322 2222222 2
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHh
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELT 481 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll 481 (564)
..+||+|. .|.+|.......+.+.--++|
T Consensus 162 ~~~~DvIY-lDPMFp~~~Ksa~~kk~m~~l 190 (250)
T d2oyra1 162 TPRPQVVY-LDPMFPHKQKSALVKKEMRVF 190 (250)
T ss_dssp SSCCSEEE-ECCCCCCCCC-----HHHHHH
T ss_pred CCCCCEEE-ECCCCccccccccchhHHHHH
Confidence 45799877 699997665555544444444
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.76 E-value=0.022 Score=53.55 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=38.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHH
Q 008457 375 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNV 419 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~ 419 (564)
..+.+||||-||.|++...+-..+..-|.++|.++.+++..+.|.
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~ 53 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF 53 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC
Confidence 367899999999998887776666667888999999999999986
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.71 E-value=0.014 Score=49.46 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=67.6
Q ss_pred hhccCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC---CCCC
Q 008457 69 RYFSGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR---QISP 144 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~ 144 (564)
+.....++.+||-+|||. |..+..+++.....+++.+|.++.-++.+++... ..++ |....+... .+.+
T Consensus 22 ~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-----~~~i--~~~~~~~~~~i~~~t~ 94 (174)
T d1f8fa2 22 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-----THVI--NSKTQDPVAAIKEITD 94 (174)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-----SEEE--ETTTSCHHHHHHHHTT
T ss_pred HhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-----eEEE--eCCCcCHHHHHHHHcC
Confidence 334458899999999986 5666777766545578899999999999987532 1222 222221110 1234
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+.+|+|+-+-. -...++...++++|+|++++.
T Consensus 95 gg~D~vid~~G--------~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 95 GGVNFALESTG--------SPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp SCEEEEEECSC--------CHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEEcCC--------cHHHHHHHHhcccCceEEEEE
Confidence 67999887432 124678889999999999875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.69 E-value=0.0094 Score=50.56 Aligned_cols=101 Identities=17% Similarity=0.086 Sum_probs=67.5
Q ss_pred ccCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC---C-CCCC
Q 008457 71 FSGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR---Q-ISPS 145 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~---~-~~~~ 145 (564)
....++.+||-+|||. |..+..+++.....+|+++|.+++-++.|++.... .+ .+...+.... . ....
T Consensus 23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~-----~~--i~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT-----DI--LNYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS-----EE--ECGGGSCHHHHHHHHTTTS
T ss_pred hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc-----cc--ccccchhHHHHHHHHhhcc
Confidence 3447899999999997 88888888875334799999999999999875321 11 1221111100 0 1234
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.+|+|+-+..-. ..+.+..+.++|+|.+++.-.
T Consensus 96 G~D~vid~~g~~--------~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 96 GVDRVIMAGGGS--------ETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp CEEEEEECSSCT--------THHHHHHHHEEEEEEEEECCC
T ss_pred CcceEEEccCCH--------HHHHHHHHHHhcCCEEEEEee
Confidence 599988754321 256778899999999988543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0067 Score=57.03 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=49.8
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS 135 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~ 135 (564)
..+..|||||+|.|.+|..|++.....+|+++|.++.+.+..+.... ..++.++.+|+..
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--GSPLQILKRDPYD 101 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--TSSCEEECSCTTC
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--CCCcEEEeCchhh
Confidence 35788999999999999999987434589999999999999988764 3578888888754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.029 Score=47.00 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=66.9
Q ss_pred ccCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 71 FSGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
....++.+||=+|||. |.++..+++.. +++++++|.+++-++.+++.... .+ .|....... .-....+|+
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad-----~~--i~~~~~~~~-~~~~~~~D~ 96 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGAD-----EV--VNSRNADEM-AAHLKSFDF 96 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCS-----EE--EETTCHHHH-HTTTTCEEE
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCc-----EE--EECchhhHH-HHhcCCCce
Confidence 3447899999999986 78888888875 78899999999988888765321 11 122221111 112357999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++....-.. .+....+.|+|+|.+++.-
T Consensus 97 vid~~g~~~--------~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 97 ILNTVAAPH--------NLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEECCSSCC--------CHHHHHTTEEEEEEEEECC
T ss_pred eeeeeecch--------hHHHHHHHHhcCCEEEEec
Confidence 887543222 3566788999999999853
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.016 Score=48.97 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=66.5
Q ss_pred cCCCCCeEEEEcC--CccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC----CCCCC
Q 008457 72 SGAGRKDVLEVGC--GAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR----QISPS 145 (564)
Q Consensus 72 ~~~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~----~~~~~ 145 (564)
...++.+||-.|+ |.|..+..+++.. +++|++++.+++..+.+++.... .+ .|..+.++.. .....
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~-----~v--i~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAH-----EV--FNHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCS-----EE--EETTSTTHHHHHHHHHCTT
T ss_pred CCCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcc-----cc--cccccccHHHHhhhhhccC
Confidence 3478999999996 4578888888775 78999999999888888765321 11 2332222111 11346
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
.+|+|+.+.. ...+....+.|+|+|+++..
T Consensus 97 g~d~v~d~~g---------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 97 GIDIIIEMLA---------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp CEEEEEESCH---------HHHHHHHHHHEEEEEEEEEC
T ss_pred CceEEeeccc---------HHHHHHHHhccCCCCEEEEE
Confidence 7999998432 23678888999999999874
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.45 E-value=0.054 Score=49.81 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=77.6
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc----cCCCeeEEEecCCcccccC
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF----TETRVSTFVCDLISDDLSR 140 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~----~~~~i~~~~~d~~~~~~~~ 140 (564)
..+.+.+. .....|+.+|||-=.-...+ ...++.+++=+|. |++++.-++.... ...+..++..|+... +..
T Consensus 80 ~~~~~~~~-~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~-~~~ 155 (297)
T d2uyoa1 80 TYFNNAVI-DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQD-WPP 155 (297)
T ss_dssp HHHHHHHH-TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSC-HHH
T ss_pred HHHHHHHh-hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccch-HHH
Confidence 33334443 34456777999876554444 2245778888886 7777655554432 234556777777642 211
Q ss_pred -----CCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 141 -----QISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 141 -----~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
.+..+.-=++++-.++++++++....+|+.+.+...||+.+++...
T Consensus 156 ~L~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 156 ALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp HHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred HHHhcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 2233444567777789999999999999999999999999888643
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.32 E-value=0.06 Score=45.00 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=62.5
Q ss_pred eEEEEcCCc--cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEccc
Q 008457 78 DVLEVGCGA--GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFV 155 (564)
Q Consensus 78 ~VLDiGcG~--G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~v 155 (564)
+|+=||||. |.++..|.+.+...+|+++|.+++.++.|++... +.....+... ......|+|+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-----~~~~~~~~~~------~~~~~~dlIil--- 68 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-----IDEGTTSIAK------VEDFSPDFVML--- 68 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-----CSEEESCGGG------GGGTCCSEEEE---
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-----chhhhhhhhh------hhccccccccc---
Confidence 588899995 4556667666666799999999999999987632 1111122211 12235788887
Q ss_pred ccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 156 LSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 156 l~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
..|+.....++.++...++++..+.-
T Consensus 69 --a~p~~~~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 69 --SSPVRTFREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp --CSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --cCCchhhhhhhhhhhccccccccccc
Confidence 55667788899999999998765543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.15 E-value=0.033 Score=46.95 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=59.0
Q ss_pred cCCCCCCCCeEEEeCCcc-cHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh
Q 008457 370 RNPTIVAGKKVLELGCGC-GGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI 447 (564)
Q Consensus 370 ~~~~~~~~~~vLelG~G~-G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~ 447 (564)
+..++.++.+||=+|||. |.++..++.. ++.+|+++|.+++-++.+++- +.. ..++..+.+..+.+
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~--------~~i~~~~~~~~~~v 88 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT--------DILNYKNGHIEDQV 88 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS--------EEECGGGSCHHHHH
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc--------ccccccchhHHHHH
Confidence 334566888999999985 3333334443 456899999999888877753 211 12333333334444
Q ss_pred hhhcC-CCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 448 KEENN-EGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 448 ~~~~~-~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.++.+ ..+|+|+ |+.= .+..++..-+++ +++|
T Consensus 89 ~~~t~g~G~D~vi--d~~g----~~~~~~~a~~~~-~~~G 121 (174)
T d1jqba2 89 MKLTNGKGVDRVI--MAGG----GSETLSQAVKMV-KPGG 121 (174)
T ss_dssp HHHTTTSCEEEEE--ECSS----CTTHHHHHHHHE-EEEE
T ss_pred HHHhhccCcceEE--EccC----CHHHHHHHHHHH-hcCC
Confidence 44433 4588876 3322 345567777888 8877
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.04 E-value=0.012 Score=49.40 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=63.4
Q ss_pred ccCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC---CCCCCc
Q 008457 71 FSGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR---QISPSS 146 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~~~ 146 (564)
....++.+||=+|+|. |..+..+++.. +.+|+++|.+++-++.+++.... .++ |....+... ....+.
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~-----~~i--~~~~~~~~~~~~~~~~g~ 94 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGAS-----LTV--NARQEDPVEAIQRDIGGA 94 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCS-----EEE--ETTTSCHHHHHHHHHSSE
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCcc-----ccc--cccchhHHHHHHHhhcCC
Confidence 3447899999999986 77777788776 68999999999999999875321 111 221111100 011233
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
++.|.+... ...+....+.|+|||++++.-
T Consensus 95 ~~~i~~~~~---------~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 95 HGVLVTAVS---------NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp EEEEECCSC---------HHHHHHHHTTEEEEEEEEECC
T ss_pred ccccccccc---------chHHHHHHHHhcCCcEEEEEE
Confidence 444443221 235778889999999998853
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.0086 Score=50.60 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=66.0
Q ss_pred cCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCccc-ccC---CCCCCc
Q 008457 72 SGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD-LSR---QISPSS 146 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~-~~~---~~~~~~ 146 (564)
...++.+||=+|||. |.++..+++.....+|+++|.++.-++.|++.... .+...+-.... ... .-....
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~-----~~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-----LVLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-----EEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc-----ccccccccccccccccccccCCCC
Confidence 447889999999987 66667777765334899999999999999875321 11111110000 000 001246
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
+|+|+.+.. -...++...+.+++||++++.-.
T Consensus 98 ~Dvvid~~G--------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 98 PEVTIECTG--------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp CSEEEECSC--------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred ceEEEeccC--------CchhHHHHHHHhcCCCEEEEEec
Confidence 898887442 12468889999999999988543
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=95.00 E-value=0.0074 Score=53.99 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhc---ccc-------cCCCeeEEEecCCcccccCCCCC
Q 008457 75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH---KDF-------TETRVSTFVCDLISDDLSRQISP 144 (564)
Q Consensus 75 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~---~~~-------~~~~i~~~~~d~~~~~~~~~~~~ 144 (564)
...+|||.-||.|..+..++.. +++|+++|-++.+....+.. ... ...+++++++|....-- . ..
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~--~-~~ 162 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT--D-IT 162 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST--T-CS
T ss_pred CCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHh--c-cC
Confidence 3458999999999999999998 78999999999765544432 111 12478899998643211 1 34
Q ss_pred CceeEEEEcccccCC
Q 008457 145 SSIDIVTMVFVLSAV 159 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~ 159 (564)
.+||+|++-=.+.+-
T Consensus 163 ~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 163 PRPQVVYLDPMFPHK 177 (250)
T ss_dssp SCCSEEEECCCCCCC
T ss_pred CCCCEEEECCCCccc
Confidence 679999996665543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.94 E-value=0.13 Score=43.02 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=64.1
Q ss_pred hcCCCCCCCCeEEEeCCcccHHHHHHHh--cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchh
Q 008457 369 ARNPTIVAGKKVLELGCGCGGICSMVAA--GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 369 ~~~~~~~~~~~vLelG~G~G~l~~~~~~--~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
.......++.+||=+|||.-++....++ .++..|+.+|.++.-++.+++- +. ..+ ++-.+.+..+.
T Consensus 21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga------~~~--i~~~~~~~~~~ 88 (174)
T d1f8fa2 21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA------THV--INSKTQDPVAA 88 (174)
T ss_dssp HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC------SEE--EETTTSCHHHH
T ss_pred HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC------eEE--EeCCCcCHHHH
Confidence 4444566899999999985333332222 3677899999999888887763 22 122 23333344555
Q ss_pred hhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 447 IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+..+.++.||+|+ +....+..++...+++ +++|
T Consensus 89 i~~~t~gg~D~vi------d~~G~~~~~~~~~~~~-~~~G 121 (174)
T d1f8fa2 89 IKEITDGGVNFAL------ESTGSPEILKQGVDAL-GILG 121 (174)
T ss_dssp HHHHTTSCEEEEE------ECSCCHHHHHHHHHTE-EEEE
T ss_pred HHHHcCCCCcEEE------EcCCcHHHHHHHHhcc-cCce
Confidence 5566666777665 3345667888888999 8877
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.93 E-value=0.013 Score=49.74 Aligned_cols=103 Identities=8% Similarity=-0.049 Sum_probs=68.6
Q ss_pred ccCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCccc---ccCCCCCCc
Q 008457 71 FSGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD---LSRQISPSS 146 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~---~~~~~~~~~ 146 (564)
....++.+||=+|||. |..+..+++.....+|+.+|.+++-++.|++.... .++...-.+.. .......+.
T Consensus 24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~-----~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT-----DCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-----EEECGGGCSSCHHHHHHHHHTSC
T ss_pred hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC-----cccCCccchhhhhhhHhhhhcCC
Confidence 3447899999999998 88888888886445899999999999999886431 11110000000 000012356
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCC-eEEEEEec
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPT-GYVLFRDY 186 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkpg-G~lii~~~ 186 (564)
+|+|+-+.. -...+.+..+.++|| |.+++.-.
T Consensus 99 ~d~vie~~G--------~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 99 VDYSLDCAG--------TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp BSEEEESSC--------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CcEEEEecc--------cchHHHHHHHHhhcCCeEEEecCC
Confidence 899877432 234788899999996 99988543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.86 E-value=0.021 Score=53.54 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=38.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHH
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNV 419 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~ 419 (564)
.++.+|||+|.|.|.++..++.. .+.+|+++|.++..++.+++..
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~ 87 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF 87 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc
Confidence 36779999999999999888865 4679999999999999888654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.86 E-value=0.021 Score=47.91 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=62.0
Q ss_pred CCCCCCeEEEeCCcc-cHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc-c----chh
Q 008457 373 TIVAGKKVLELGCGC-GGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD-H----IEA 446 (564)
Q Consensus 373 ~~~~~~~vLelG~G~-G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~-~----~~~ 446 (564)
...++.+||=+|||. |.++..++...+.+|+++|.+++-++.+++- +.. .+ +.+.... . .+.
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga~------~~--~~~~~~~~~~~~~~~~ 90 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GAD------VT--LVVDPAKEEESSIIER 90 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS------EE--EECCTTTSCHHHHHHH
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CCc------EE--Eeccccccccchhhhh
Confidence 455788999999984 3333444444567999999999888888763 110 11 1121111 1 122
Q ss_pred hhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 447 IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
+.......+|+|+- ....+..++..-+++ +++| ++++.....
T Consensus 91 ~~~~~g~g~D~vid------~~g~~~~~~~a~~~~-~~~G--------~iv~~G~~~ 132 (170)
T d1e3ja2 91 IRSAIGDLPNVTID------CSGNEKCITIGINIT-RTGG--------TLMLVGMGS 132 (170)
T ss_dssp HHHHSSSCCSEEEE------CSCCHHHHHHHHHHS-CTTC--------EEEECSCCS
T ss_pred hhcccccCCceeee------cCCChHHHHHHHHHH-hcCC--------ceEEEecCC
Confidence 23334567887762 233456778888899 8887 665554443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.71 E-value=0.066 Score=44.49 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=59.7
Q ss_pred CeEEEEcCCc--cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 77 KDVLEVGCGA--GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 77 ~~VLDiGcG~--G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
++|.=||+|. +.++..|.+. +.+|++.|.+++.++.+++... +.....+.. . -...|+|+.
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~-----~~~~~~~~~--~------~~~~DiIil-- 63 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQL-----VDEAGQDLS--L------LQTAKIIFL-- 63 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTS-----CSEEESCGG--G------GTTCSEEEE--
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhc-----cceeeeecc--c------ccccccccc--
Confidence 4678899984 4556666665 7899999999999988876532 111111111 1 135798887
Q ss_pred cccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 155 VLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 155 vl~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
.+|......+++++...|+++-.++-
T Consensus 64 ---avp~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 64 ---CTPIQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp ---CSCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred ---cCcHhhhhhhhhhhhhhcccccceee
Confidence 45667788999999999998876643
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.42 E-value=0.16 Score=40.26 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=59.2
Q ss_pred CeEEEEcCCccccHHHHHHh--CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 77 KDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 77 ~~VLDiGcG~G~~~~~l~~~--~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
++|+=+|+| .++..+++. ..+..|+.+|.+++.++.++... .+.++.+|..+........-...|.+++.
T Consensus 1 M~IvI~G~G--~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~- 72 (132)
T d1lssa_ 1 MYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAV- 72 (132)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEEC-
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhccc-
Confidence 467777774 455544443 12789999999999988876543 35678899876654333344568888883
Q ss_pred cccCCChhHHHHHHHHHHhccCCCeEE
Q 008457 155 VLSAVSPEKMSLVLQNIKKVLKPTGYV 181 (564)
Q Consensus 155 vl~~~~~~~~~~~l~~~~r~LkpgG~l 181 (564)
.+.++...++..+.+.+.+.-.+
T Consensus 73 ----t~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 73 ----TGKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp ----CSCHHHHHHHHHHHHHTTCCCEE
T ss_pred ----CCcHHHHHHHHHHHHHcCCceEE
Confidence 22233444555666777777443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.30 E-value=0.021 Score=48.33 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=40.3
Q ss_pred ccCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc
Q 008457 71 FSGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD 120 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~ 120 (564)
...+++.+||=+|||. |.++..+++.....+|+++|.+++-++.|++...
T Consensus 25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 25 GKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence 3347899999999996 5666666776644789999999999999998754
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=94.29 E-value=0.086 Score=46.81 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=80.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCC---------------------------------------
Q 008457 359 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--------------------------------------- 399 (564)
Q Consensus 359 ~~~~~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~--------------------------------------- 399 (564)
.++-+|+..+.... -..+..++|--||+|.+.+.++....
T Consensus 34 Laa~il~~al~l~~-w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~ 112 (249)
T d1o9ga_ 34 LATEIFQRALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERR 112 (249)
T ss_dssp HHHHHHHHHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhc-CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhcccc
Confidence 45555555553322 22455799999999999887765210
Q ss_pred --CEEEEEcCChhHHHHH---HHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccEEEEeceeeCCC------
Q 008457 400 --DLVVATDGDSIALDLL---AQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE------ 468 (564)
Q Consensus 400 --~~v~~tD~~~~~l~~~---~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~------ 468 (564)
..+++.|+++.+++.+ +.|+...++. ..+.+...|+.+....... ..+...++||+ +..|...
T Consensus 113 ~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~---~~i~i~~~d~f~~~~~~~~--~~~~~~GlIVt-NPPYGERl~~~~~ 186 (249)
T d1o9ga_ 113 EQSERFGKPSYLEAAQAARRLRERLTAEGGA---LPCAIRTADVFDPRALSAV--LAGSAPDVVLT-DLPYGERTHWEGQ 186 (249)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHTTSS---CCEEEEECCTTCGGGHHHH--HTTCCCSEEEE-ECCGGGSSSSSSC
T ss_pred ccCCccccccCHHHHHHHHHHHHHHHHcCCC---ceeeeeecchhccCcchhc--cCCCCCCEEEe-CCCcccccccccc
Confidence 1367889999999888 4688887775 5688887776544332222 13456788875 5566533
Q ss_pred ----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 008457 469 ----AILPLFATAKELTASSNKSLREDQQPAFILCHIFR 503 (564)
Q Consensus 469 ----~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r 503 (564)
.+..+...+++.+ .. ...++++...|
T Consensus 187 ~~~~~~~~~~~~l~~~~-p~--------~s~~~it~~~~ 216 (249)
T d1o9ga_ 187 VPGQPVAGLLRSLASAL-PA--------HAVIAVTDRSR 216 (249)
T ss_dssp CCHHHHHHHHHHHHHHS-CT--------TCEEEEEESSS
T ss_pred chHHHHHHHHHHHHccC-CC--------CcEEEEeCchh
Confidence 2455556666666 43 33666665544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.27 E-value=0.25 Score=41.19 Aligned_cols=110 Identities=12% Similarity=0.075 Sum_probs=61.6
Q ss_pred HHHHHHHH-hcCCCCCCCCeEEEeCCcccHHHHHHHh--cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 361 AHLMAAVL-ARNPTIVAGKKVLELGCGCGGICSMVAA--GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 361 ~~~l~~~l-~~~~~~~~~~~vLelG~G~G~l~~~~~~--~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
+...+... .+.....++.+||=+|||..++.....+ .++.+|+++|.+++-++.+++. +. ..+....
T Consensus 11 a~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga------~~~i~~~ 80 (174)
T d1p0fa2 11 GFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GA------TECLNPK 80 (174)
T ss_dssp HHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TC------SEEECGG
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CC------cEEEcCC
Confidence 44434333 3445677999999999986544444333 3677999999999988888763 22 1222111
Q ss_pred cCCCccchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 438 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 438 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
-.+....+......++.+|+|+- .......+......+++++|
T Consensus 81 ~~d~~~~~~~~~~~~~G~d~vid------~~g~~~~~~~~~~~~~~~~G 123 (174)
T d1p0fa2 81 DYDKPIYEVICEKTNGGVDYAVE------CAGRIETMMNALQSTYCGSG 123 (174)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEE------CSCCHHHHHHHHHTBCTTTC
T ss_pred CchhHHHHHHHHhcCCCCcEEEE------cCCCchHHHHHHHHHHHhcC
Confidence 11111112222344567887762 23344555555555514445
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.24 E-value=0.024 Score=47.84 Aligned_cols=106 Identities=8% Similarity=-0.077 Sum_probs=62.6
Q ss_pred ccCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 71 FSGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
...+++.+||=+|||. |..+..+++.....+|+++|.+++-++.|++.-.... +.+...|...........++.+|+
T Consensus 23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~--i~~~~~d~~~~~~~~~~~~~G~d~ 100 (174)
T d1p0fa2 23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATEC--LNPKDYDKPIYEVICEKTNGGVDY 100 (174)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEE--ECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEE--EcCCCchhHHHHHHHHhcCCCCcE
Confidence 3458899999999996 5556666666534689999999999999987643110 100001100000000112356898
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccC-CCeEEEEEec
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLK-PTGYVLFRDY 186 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~Lk-pgG~lii~~~ 186 (564)
|+-...- ...+.+....++ ++|.+++.-.
T Consensus 101 vid~~g~--------~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 101 AVECAGR--------IETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp EEECSCC--------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEcCCC--------chHHHHHHHHHHHhcCceEEEEE
Confidence 8874331 234555665555 5688887543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.97 E-value=0.15 Score=43.57 Aligned_cols=108 Identities=16% Similarity=0.052 Sum_probs=64.5
Q ss_pred HHHhcCCCCCCCCeEEEeCCcccHHH-HHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCcc
Q 008457 366 AVLARNPTIVAGKKVLELGCGCGGIC-SMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH 443 (564)
Q Consensus 366 ~~l~~~~~~~~~~~vLelG~G~G~l~-~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~ 443 (564)
.+......+.+|.+||-+|||..++. ..++. .++.+|+++|.+++-++.+++. +. -.+ .+-.+.+.
T Consensus 15 ~~a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga------~~~--~~~~~~~~ 82 (195)
T d1kola2 15 YHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF------EIA--DLSLDTPL 82 (195)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC------EEE--ETTSSSCH
T ss_pred HHHHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc------cEE--EeCCCcCH
Confidence 33334456678999999999974333 33332 4677999999999888888764 21 111 11111122
Q ss_pred chhhhhh-cCCCccEEEEe---ce------eeCCCChHHHHHHHHHHhhccCC
Q 008457 444 IEAIKEE-NNEGFEVILGT---DV------SYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 444 ~~~~~~~-~~~~fD~Ii~~---d~------~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.+...++ ....+|+++-+ +. ..........++...+++ +++|
T Consensus 83 ~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~-r~gG 134 (195)
T d1kola2 83 HEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVT-RVAG 134 (195)
T ss_dssp HHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHE-EEEE
T ss_pred HHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHH-hcCC
Confidence 2223232 34578988832 11 112233567899999999 9877
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.33 Score=40.29 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=63.0
Q ss_pred HHHHHHHHh-cCCCCCCCCeEEEeCCc--ccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEee
Q 008457 361 AHLMAAVLA-RNPTIVAGKKVLELGCG--CGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 437 (564)
Q Consensus 361 ~~~l~~~l~-~~~~~~~~~~vLelG~G--~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~ 437 (564)
+...|.+.+ ....+.++.+||=.|++ .|.++..++...+.+|++++.+++-.+.+++. +.. . .++
T Consensus 12 ~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~------~--vi~ 79 (174)
T d1yb5a2 12 PYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GAH------E--VFN 79 (174)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS------E--EEE
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccccc----Ccc------c--ccc
Confidence 344455444 34456689999999973 33333444445567899999888777776642 321 1 133
Q ss_pred cCCCccchhhhh-hcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 438 WGNRDHIEAIKE-ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 438 w~~~~~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
-.+.+..+.+.. .....+|+|+- +. -.+.++...+++ +++|
T Consensus 80 ~~~~~~~~~i~~~t~~~g~d~v~d--~~-----g~~~~~~~~~~l-~~~G 121 (174)
T d1yb5a2 80 HREVNYIDKIKKYVGEKGIDIIIE--ML-----ANVNLSKDLSLL-SHGG 121 (174)
T ss_dssp TTSTTHHHHHHHHHCTTCEEEEEE--SC-----HHHHHHHHHHHE-EEEE
T ss_pred cccccHHHHhhhhhccCCceEEee--cc-----cHHHHHHHHhcc-CCCC
Confidence 333333333333 34557998873 22 245677778899 8877
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.69 E-value=0.081 Score=43.92 Aligned_cols=95 Identities=20% Similarity=0.164 Sum_probs=54.9
Q ss_pred CCCCCCCeEEEeCCcccHHH-HHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 372 PTIVAGKKVLELGCGCGGIC-SMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 372 ~~~~~~~~vLelG~G~G~l~-~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
....++.+||=+|||.-++. ..++...+.+|+++|.+++-++.+++. +.. . .++..+.+..+.+...
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga~------~--~i~~~~~~~~~~~~~~ 90 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GAS------L--TVNARQEDPVEAIQRD 90 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS------E--EEETTTSCHHHHHHHH
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Ccc------c--cccccchhHHHHHHHh
Confidence 34557889999999853333 333344557999999999888877653 221 1 1333333334444333
Q ss_pred cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 ~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
..+.+|+|+ .. .-...++..-++| +++|
T Consensus 91 ~~g~~~~i~------~~-~~~~~~~~~~~~l-~~~G 118 (166)
T d1llua2 91 IGGAHGVLV------TA-VSNSAFGQAIGMA-RRGG 118 (166)
T ss_dssp HSSEEEEEE------CC-SCHHHHHHHHTTE-EEEE
T ss_pred hcCCccccc------cc-ccchHHHHHHHHh-cCCc
Confidence 333333332 12 2245567777899 8877
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.60 E-value=0.2 Score=41.61 Aligned_cols=127 Identities=18% Similarity=0.134 Sum_probs=70.4
Q ss_pred CCCCCCeEEEeCCcccHHHHH-HHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCc-cchhhhh
Q 008457 373 TIVAGKKVLELGCGCGGICSM-VAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD-HIEAIKE 449 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~-~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~-~~~~~~~ 449 (564)
.+.++.+||=+|||..++... ++. .++.+|+++|.+++-++.+++. +.. .+...+-.+.. ..+.+..
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~------~~~~~~~~~~~~~~~~~~~ 92 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD------LVLQISKESPQEIARKVEG 92 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS------EEEECSSCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc------ccccccccccccccccccc
Confidence 445788999999986544433 333 3556999999999888887763 221 11111111100 1111222
Q ss_pred hcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCChhHHHHHHHHcCCeEEEEc
Q 008457 450 ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 525 (564)
Q Consensus 450 ~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 525 (564)
..+..+|+|+ +....+..++....++ +++| ++++.........-.+...+ ..++++.-.+
T Consensus 93 ~~g~g~Dvvi------d~~G~~~~~~~a~~~~-~~gG--------~iv~~G~~~~~~~~~~~~~~-~k~l~i~Gs~ 152 (171)
T d1pl8a2 93 QLGCKPEVTI------ECTGAEASIQAGIYAT-RSGG--------TLVLVGLGSEMTTVPLLHAA-IREVDIKGVF 152 (171)
T ss_dssp HHTSCCSEEE------ECSCCHHHHHHHHHHS-CTTC--------EEEECSCCCSCCCCCHHHHH-HTTCEEEECC
T ss_pred cCCCCceEEE------eccCCchhHHHHHHHh-cCCC--------EEEEEecCCCCCccCHHHHH-HCCcEEEEEe
Confidence 2345778765 3334567788888999 8877 55555444332221233332 3566666433
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.19 Score=46.90 Aligned_cols=129 Identities=18% Similarity=0.266 Sum_probs=73.4
Q ss_pred CCeEEEeCCcccHHHHHHHhcCC--CEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 377 GKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 377 ~~~vLelG~G~G~l~~~~~~~~~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
..+|+||.||+|++...+-..+. .-|.++|+++.+++..+.|.... .+..-|-.+. .. ..++...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~---------~~~~~di~~~-~~---~~~~~~~ 68 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHT---------QLLAKTIEGI-TL---EEFDRLS 68 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTS---------CEECSCGGGC-CH---HHHHHHC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCC---------CcccCchhhC-CH---hHcCCCC
Confidence 35899999999988765544453 34779999999999998884211 1111111100 11 1222347
Q ss_pred ccEEEEeceeeCC----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC----hhHHHHHHHHcCCe
Q 008457 455 FEVILGTDVSYIP----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD----EPSMLSAATQCGFR 520 (564)
Q Consensus 455 fD~Ii~~d~~y~~----------~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~~g~~ 520 (564)
+|+++++-..=.. .....|+-.+.+++ +.-. ..|.+++.-...... .+.+...+++.|+.
T Consensus 69 ~Dll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i-~~~~-----~kPk~~i~ENV~~l~~~~~~~~i~~~l~~~GY~ 142 (343)
T d1g55a_ 69 FDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDIL-PRLQ-----KLPKYILLENVKGFEVSSTRDLLIQTIENCGFQ 142 (343)
T ss_dssp CSEEEECCC------------------CHHHHHHHHG-GGCS-----SCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEE
T ss_pred ccEEEeecccccccccccccccccccccccchhhhhH-hhhc-----CCCceeeeeccCCcccchhhHHHHhhhhccccc
Confidence 8999977543221 12334666666666 3211 135666665555432 24567788889998
Q ss_pred EEEE
Q 008457 521 LVDK 524 (564)
Q Consensus 521 ~~~~ 524 (564)
+...
T Consensus 143 v~~~ 146 (343)
T d1g55a_ 143 YQEF 146 (343)
T ss_dssp EEEE
T ss_pred ccee
Confidence 8765
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.48 E-value=0.054 Score=45.44 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=64.8
Q ss_pred CCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc---cCCCCCCceeE
Q 008457 74 AGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL---SRQISPSSIDI 149 (564)
Q Consensus 74 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~~fD~ 149 (564)
.++.+||-+|+|. |..+..+++.....+|+++|.+++-++.+++.... .++ +...+.. ..-.....+|+
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~-----~~i--~~~~~~~~~~~~~~~~~g~d~ 103 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD-----HVV--DARRDPVKQVMELTRGRGVNV 103 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS-----EEE--ETTSCHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc-----eee--cCcccHHHHHHHhhCCCCceE
Confidence 6789999999986 56666777665456899999999999999875431 122 1111110 00012346998
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
|+.+.. -...++...+.|++||++++.-
T Consensus 104 vid~~g--------~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 104 AMDFVG--------SQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEESSC--------CHHHHHHGGGGEEEEEEEEECC
T ss_pred EEEecC--------cchHHHHHHHHHhCCCEEEEEe
Confidence 887443 1236788899999999999854
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.38 E-value=0.11 Score=43.11 Aligned_cols=94 Identities=19% Similarity=0.080 Sum_probs=57.7
Q ss_pred CCCCCCeEEEeCCcccHHH-HHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhc
Q 008457 373 TIVAGKKVLELGCGCGGIC-SMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN 451 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~-~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~ 451 (564)
...++.+||=.|||.-++. ..++...+.+|+++|.+++-++.+++. +.. ..++..+.+....+....
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga~--------~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GAD--------LVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCS--------EEECTTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Ccc--------eecccccchhhhhccccc
Confidence 4558889999999875444 333344566899999999888877663 321 123344433333344444
Q ss_pred CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 452 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 452 ~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.+.+|+|+ | . .-...+...-+++ +++|
T Consensus 92 ~~~~~~v~--~----~-~~~~~~~~a~~~l-~~~G 118 (168)
T d1rjwa2 92 GGVHAAVV--T----A-VSKPAFQSAYNSI-RRGG 118 (168)
T ss_dssp SSEEEEEE--S----S-CCHHHHHHHHHHE-EEEE
T ss_pred CCCceEEe--e----c-CCHHHHHHHHHHh-ccCC
Confidence 44444332 1 1 2456788888999 8877
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.33 E-value=0.02 Score=47.45 Aligned_cols=99 Identities=12% Similarity=0.168 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
-++.+|+-||+|. |..+...+... +.+|+.+|.+++.++..+..... ++.+...+- ..+... -...|+|+.
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~---~~~~~~~~~--~~l~~~--~~~aDivI~ 101 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS---RVELLYSNS--AEIETA--VAEADLLIG 101 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG---GSEEEECCH--HHHHHH--HHTCSEEEE
T ss_pred CCCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc---cceeehhhh--hhHHHh--hccCcEEEE
Confidence 3689999999997 66666666665 89999999999999888776542 333332221 111101 135799999
Q ss_pred cccccCCChhHHHHHHHHHHhccCCCeEEE
Q 008457 153 VFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 153 ~~vl~~~~~~~~~~~l~~~~r~LkpgG~li 182 (564)
...+.-- .-+..+-+++.+.+|||.+++
T Consensus 102 aalipG~--~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 102 AVLVPGR--RAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CCCCTTS--SCCCCBCHHHHTTSCTTCEEE
T ss_pred eeecCCc--ccCeeecHHHHhhcCCCcEEE
Confidence 7654322 233445677889999998765
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.99 E-value=0.2 Score=42.15 Aligned_cols=103 Identities=22% Similarity=0.217 Sum_probs=59.3
Q ss_pred HHHHh-cCCCCCCCCeEEEeCCcc-cHHHHHHHhc-CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 365 AAVLA-RNPTIVAGKKVLELGCGC-GGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 365 ~~~l~-~~~~~~~~~~vLelG~G~-G~l~~~~~~~-~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
+.... +.....+|.+||=+|||. |.+...++.. ++.+|+++|.+++-++.+++. +.. . .++-.+.
T Consensus 16 a~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~------~--vi~~~~~ 83 (182)
T d1vj0a2 16 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD------L--TLNRRET 83 (182)
T ss_dssp HHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS------E--EEETTTS
T ss_pred HHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce------E--EEecccc
Confidence 43443 334566899999999983 3333333333 456899999999988888653 211 1 1222222
Q ss_pred cc---chhhhhhc-CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 442 DH---IEAIKEEN-NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 442 ~~---~~~~~~~~-~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+. .+.+.++. ...+|+|+ |+.- .+..++...+++ +++|
T Consensus 84 ~~~~~~~~i~~~~~~~g~Dvvi--d~vG----~~~~~~~a~~~l-~~~G 125 (182)
T d1vj0a2 84 SVEERRKAIMDITHGRGADFIL--EATG----DSRALLEGSELL-RRGG 125 (182)
T ss_dssp CHHHHHHHHHHHTTTSCEEEEE--ECSS----CTTHHHHHHHHE-EEEE
T ss_pred chHHHHHHHHHhhCCCCceEEe--ecCC----chhHHHHHHHHh-cCCC
Confidence 21 11222322 34688876 3432 244567777889 8877
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=92.86 E-value=0.051 Score=50.59 Aligned_cols=123 Identities=13% Similarity=0.143 Sum_probs=71.6
Q ss_pred CeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCCccE
Q 008457 378 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV 457 (564)
Q Consensus 378 ~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~fD~ 457 (564)
.+||||-||.|++..-+-..+...|.++|+++.+.+..+.|.. + ....-|..+. ....-..+|+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~--------~--~~~~~Di~~~------~~~~~~~~dl 64 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS--------A--KLIKGDISKI------SSDEFPKCDG 64 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC--------S--EEEESCTTTS------CGGGSCCCSE
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC--------C--CCccCChhhC------CHhHcccccE
Confidence 3799999999988866655566677899999999998888842 1 1122232221 1112247899
Q ss_pred EEEeceeeC---------CCC-hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeeccCC-------hhHHHHHHHHcCCe
Q 008457 458 ILGTDVSYI---------PEA-ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-------EPSMLSAATQCGFR 520 (564)
Q Consensus 458 Ii~~d~~y~---------~~~-~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~~~r~~~-------~~~~~~~~~~~g~~ 520 (564)
|+++-..=. .++ -..|+-.+.+++ +. ..|.+++.-...... ...++..+.+.|+.
T Consensus 65 l~~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i-~~-------~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~ 136 (324)
T d1dcta_ 65 IIGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRIL-KQ-------KKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYD 136 (324)
T ss_dssp EEECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHH-HH-------HCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEE
T ss_pred EeecccccccccccccccccccccchHHHHHHHH-Hh-------hCCceeeccccccccccccchhhHHHHhHHhhCCCc
Confidence 997744321 112 224555555555 22 133555555543221 12345666667877
Q ss_pred EEEE
Q 008457 521 LVDK 524 (564)
Q Consensus 521 ~~~~ 524 (564)
+...
T Consensus 137 v~~~ 140 (324)
T d1dcta_ 137 VHII 140 (324)
T ss_dssp EEEE
T ss_pred ccee
Confidence 7665
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.74 E-value=0.082 Score=44.63 Aligned_cols=97 Identities=15% Similarity=0.084 Sum_probs=64.7
Q ss_pred ccCCCCCeEEEEcC--CccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC----CCCC
Q 008457 71 FSGAGRKDVLEVGC--GAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR----QISP 144 (564)
Q Consensus 71 l~~~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~----~~~~ 144 (564)
....++.+||=.|+ |.|..+..+++.. ++++++++.+++-.+.+++.... .. .+..+.++.. -...
T Consensus 21 ~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga~-----~v--i~~~~~~~~~~v~~~t~~ 92 (183)
T d1pqwa_ 21 GRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVE-----YV--GDSRSVDFADEILELTDG 92 (183)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCS-----EE--EETTCSTHHHHHHHHTTT
T ss_pred hCCCCCCEEEEECCCCCcccccchhhccc-cccceeeeccccccccccccccc-----cc--ccCCccCHHHHHHHHhCC
Confidence 34478899998773 3578888888775 78999999888888888865321 11 2222222111 1134
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
..+|+|+.... ...++.+.+.|+++|+++..
T Consensus 93 ~g~d~v~d~~g---------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 93 YGVDVVLNSLA---------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp CCEEEEEECCC---------THHHHHHHHTEEEEEEEEEC
T ss_pred CCEEEEEeccc---------chHHHHHHHHhcCCCEEEEE
Confidence 67999998443 12567788999999999874
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.67 E-value=0.44 Score=44.12 Aligned_cols=121 Identities=17% Similarity=0.270 Sum_probs=78.5
Q ss_pred HHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc----------------------cc
Q 008457 65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD----------------------FT 122 (564)
Q Consensus 65 ~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~----------------------~~ 122 (564)
..+.+++...+...|+-+|||.=.....+...+++.+++=+|. |+.++.=++... ..
T Consensus 86 ~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~ 164 (328)
T d1rjda_ 86 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLID 164 (328)
T ss_dssp HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred HHHHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCC
Confidence 3334444445667899999999888888877777777777777 444332211110 01
Q ss_pred CCCeeEEEecCCcccc-----cCCCCCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEecC
Q 008457 123 ETRVSTFVCDLISDDL-----SRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYA 187 (564)
Q Consensus 123 ~~~i~~~~~d~~~~~~-----~~~~~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~~ 187 (564)
..+...+.+|+.+... ...+....-=++++-.|+.+++++....+++.+.+... +|.+++.+..
T Consensus 165 s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i 233 (328)
T d1rjda_ 165 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPI 233 (328)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEEC
T ss_pred CCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccC
Confidence 2456677778765322 11223333457888889999999999999999988875 4666666654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.65 E-value=0.6 Score=38.71 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=62.5
Q ss_pred hHHHHHHHH-hcCCCCCCCCeEEEeCCcccHHH-HHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 360 SAHLMAAVL-ARNPTIVAGKKVLELGCGCGGIC-SMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 360 ~~~~l~~~l-~~~~~~~~~~~vLelG~G~G~l~-~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
++...+... .....+.++.+||=+|||.-++. ..++. .++..|+++|.+++-++.+++- +.. .+ +
T Consensus 11 Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~------~~--i 78 (174)
T d1e3ia2 11 CGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT------DC--L 78 (174)
T ss_dssp THHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS------EE--E
T ss_pred hHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC------cc--c
Confidence 344444433 34456678899999999863333 33333 3566999999999877777763 211 11 1
Q ss_pred ecCCCc-cch-hhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccC-C
Q 008457 437 EWGNRD-HIE-AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSN-K 486 (564)
Q Consensus 437 ~w~~~~-~~~-~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~-g 486 (564)
+....+ ... .......+.+|+|+ +..-.+..+....+.+ +++ |
T Consensus 79 ~~~~~~~~~~~~~~~~~~~G~d~vi------e~~G~~~~~~~a~~~~-~~g~G 124 (174)
T d1e3ia2 79 NPRELDKPVQDVITELTAGGVDYSL------DCAGTAQTLKAAVDCT-VLGWG 124 (174)
T ss_dssp CGGGCSSCHHHHHHHHHTSCBSEEE------ESSCCHHHHHHHHHTB-CTTTC
T ss_pred CCccchhhhhhhHhhhhcCCCcEEE------EecccchHHHHHHHHh-hcCCe
Confidence 221111 111 11223455677664 4455777788888888 774 5
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.64 E-value=0.63 Score=38.64 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=40.5
Q ss_pred hHHHHHHHH-hcCCCCCCCCeEEEeCCcccHHHHHHHh--cCCCEEEEEcCChhHHHHHHHH
Q 008457 360 SAHLMAAVL-ARNPTIVAGKKVLELGCGCGGICSMVAA--GSADLVVATDGDSIALDLLAQN 418 (564)
Q Consensus 360 ~~~~l~~~l-~~~~~~~~~~~vLelG~G~G~l~~~~~~--~~~~~v~~tD~~~~~l~~~~~n 418 (564)
++...+... .......++.+||=.|||..++.....+ .++++|+++|.+++-++.+++-
T Consensus 12 Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 12 CGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp THHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 344444433 3444566899999999985444433333 3567999999999999988875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.59 E-value=0.12 Score=43.48 Aligned_cols=97 Identities=9% Similarity=0.054 Sum_probs=65.6
Q ss_pred ccCCCCCeEEEEcCC--ccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCC----CC
Q 008457 71 FSGAGRKDVLEVGCG--AGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI----SP 144 (564)
Q Consensus 71 l~~~~~~~VLDiGcG--~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~----~~ 144 (564)
....++.+||=.|+| .|..+..+++.. +++|++++.|++-.+.+++.... . ..|..++++...+ ..
T Consensus 24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa~-----~--vi~~~~~d~~~~v~~~t~g 95 (179)
T d1qora2 24 YEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAW-----Q--VINYREEDLVERLKEITGG 95 (179)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCS-----E--EEETTTSCHHHHHHHHTTT
T ss_pred hCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCCe-----E--EEECCCCCHHHHHHHHhCC
Confidence 334788999998666 477778888775 78999999999999998865321 1 1233333221111 24
Q ss_pred CceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 145 SSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
..+|+|+....- ..+......|+|+|.+++.
T Consensus 96 ~g~d~v~d~~g~---------~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 96 KKVRVVYDSVGR---------DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp CCEEEEEECSCG---------GGHHHHHHTEEEEEEEEEC
T ss_pred CCeEEEEeCccH---------HHHHHHHHHHhcCCeeeec
Confidence 578988874431 1467788999999998774
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.57 E-value=0.089 Score=48.69 Aligned_cols=57 Identities=12% Similarity=-0.024 Sum_probs=47.4
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF 121 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~ 121 (564)
.+.+.+.+... .++..|||.=||+|..+....+. +.+.+|+|++++.++.|+++...
T Consensus 238 ~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHh
Confidence 44555555554 78999999999999998887777 89999999999999999998753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.33 E-value=0.092 Score=43.75 Aligned_cols=99 Identities=19% Similarity=0.155 Sum_probs=64.8
Q ss_pred cCCCCCeEEEEcC-C-ccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc----cCCCCCC
Q 008457 72 SGAGRKDVLEVGC-G-AGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQISPS 145 (564)
Q Consensus 72 ~~~~~~~VLDiGc-G-~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~ 145 (564)
...++.+||=+|| | .|..+..+++.....+|+++|.+++-++.+++.... .++ +....+. ......+
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-----~~i--~~~~~~~~~~~~~~~~~~ 96 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-----YVI--NASMQDPLAEIRRITESK 96 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-----EEE--ETTTSCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-----eee--ccCCcCHHHHHHHHhhcc
Confidence 4478999999997 4 466666666665456899999999999999875321 111 1111111 0011245
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
.||+|+.+.. -...++...+.++|||.+++.-
T Consensus 97 ~~d~vid~~g--------~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 97 GVDAVIDLNN--------SEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp CEEEEEESCC--------CHHHHTTGGGGEEEEEEEEECC
T ss_pred cchhhhcccc--------cchHHHhhhhhcccCCEEEEec
Confidence 6999988543 1235677889999999998764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.18 E-value=0.085 Score=43.93 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=33.9
Q ss_pred CCCCCCCeEEEeCCcc-cHHHHHHHhcCCCEEEEEcCChhHHHHHHHH
Q 008457 372 PTIVAGKKVLELGCGC-GGICSMVAAGSADLVVATDGDSIALDLLAQN 418 (564)
Q Consensus 372 ~~~~~~~~vLelG~G~-G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n 418 (564)
....++.+||-+|+|. |.++..++...+.+|+++|.+++-++.+++.
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l 70 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM 70 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence 4566899999999983 3333334434456899999999888887763
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.09 E-value=0.064 Score=44.97 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEe-cCCcc-----cccCCCC---
Q 008457 74 AGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVC-DLISD-----DLSRQIS--- 143 (564)
Q Consensus 74 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~-d~~~~-----~~~~~~~--- 143 (564)
-++.+||-||+|. |..+...+... |.+|+.+|.++..++..+......- .+..... +.... .+...+.
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i-~~~~~~~~~~~~~~gyA~~~s~~~~~~~ 104 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFI-TVDDEAMKTAETAGGYAKEMGEEFRKKQ 104 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEEC-CC-----------------------CCH
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceE-EEeccccccccccccchhhcCHHHHHHH
Confidence 4678999999997 66666666665 8999999999999999887654211 0000000 00000 0000000
Q ss_pred -------CCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEE
Q 008457 144 -------PSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVL 182 (564)
Q Consensus 144 -------~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~li 182 (564)
-...|+|+....+.-- .-+..+=+++.+.||||.+++
T Consensus 105 ~~~l~~~l~~aDlVI~talipG~--~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 105 AEAVLKELVKTDIAITTALIPGK--PAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHHHTTCSEEEECCCCTTS--CCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHHhhhhheeeeecCCc--ccceeehHHHHHhcCCCcEEE
Confidence 1257999987655432 123335677889999998876
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.82 E-value=1.1 Score=36.77 Aligned_cols=106 Identities=12% Similarity=0.047 Sum_probs=62.6
Q ss_pred hHHHHHHHHh-cCCCCCCCCeEEEeCCcccHHHHHHHh----cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEE
Q 008457 360 SAHLMAAVLA-RNPTIVAGKKVLELGCGCGGICSMVAA----GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK 434 (564)
Q Consensus 360 ~~~~l~~~l~-~~~~~~~~~~vLelG~G~G~l~~~~~~----~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~ 434 (564)
++...+.... +...+.++.+||=.||| | ++.+++. .+++.|+++|.+++-++.+++. +.. .+
T Consensus 11 ca~~Tay~al~~~~~~~~G~tVlI~GaG-G-vG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~------~~- 77 (176)
T d2fzwa2 11 CGISTGYGAAVNTAKLEPGSVCAVFGLG-G-VGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT------EC- 77 (176)
T ss_dssp THHHHHHHHHHTTTCCCTTCEEEEECCS-H-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS------EE-
T ss_pred cHHHHHHHHHHHhhCCCCCCEEEEecch-h-HHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc------EE-
Confidence 3444444443 44567789999999998 4 4433332 3678999999999888888764 211 11
Q ss_pred EeecCCC-c-cchhhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 435 RLEWGNR-D-HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 435 ~l~w~~~-~-~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
++..+. + ....+....++.+|+|+ +..-.+.+++....++ +++|
T Consensus 78 -i~~~~~~~~~~~~~~~~~~~g~D~vi------d~~G~~~~~~~~~~~~-~~g~ 123 (176)
T d2fzwa2 78 -INPQDFSKPIQEVLIEMTDGGVDYSF------ECIGNVKVMRAALEAC-HKGW 123 (176)
T ss_dssp -ECGGGCSSCHHHHHHHHTTSCBSEEE------ECSCCHHHHHHHHHTB-CTTT
T ss_pred -EeCCchhhHHHHHHHHHcCCCCcEee------ecCCCHHHHHHHHHhh-cCCc
Confidence 122111 1 11222334455778765 3334556778888888 7755
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.80 E-value=0.096 Score=46.76 Aligned_cols=56 Identities=21% Similarity=0.096 Sum_probs=45.8
Q ss_pred hhHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc
Q 008457 62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD 120 (564)
Q Consensus 62 ~~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~ 120 (564)
.+.+.+.+... .++..|||.=||+|..+....+. +.+.+|+|++++.++.|+++..
T Consensus 200 ~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence 34455555554 78999999999999998777766 8899999999999999998753
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=91.79 E-value=0.056 Score=50.15 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=45.0
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcccHHHHHHHhcCCCEEEEEcCChhHHHHHHHHHHhcC
Q 008457 363 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANL 423 (564)
Q Consensus 363 ~l~~~l~~~~~~~~~~~vLelG~G~G~l~~~~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~ 423 (564)
.|.+++.... ..+|..|||--||+| -++.+|...+.+.+++|++++.++.+++.+..+.
T Consensus 238 ~L~~rlI~~~-s~~gdiVlDpF~GSG-TT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~~ 296 (320)
T d1booa_ 238 KLPEFFIRML-TEPDDLVVDIFGGSN-TTGLVAERESRKWISFEMKPEYVAASAFRFLDNN 296 (320)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTC-HHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred HHHHHhhhhc-ccCCCEEEecCCCCc-HHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhcc
Confidence 4455554422 237889999999999 6666666677899999999999999988766543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.93 E-value=0.097 Score=43.42 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=61.5
Q ss_pred cCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC---CCCCCce
Q 008457 72 SGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR---QISPSSI 147 (564)
Q Consensus 72 ~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~~~f 147 (564)
...++.+||-.|+|. |..+..+++.. +.+|+++|.+++-++.+++... ... .+..+.+... ....+.+
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~Ga------~~~-~~~~~~~~~~~~~~~~~~~~ 95 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGA------DLV-VNPLKEDAAKFMKEKVGGVH 95 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTC------SEE-ECTTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhcCc------cee-cccccchhhhhcccccCCCc
Confidence 347899999999987 55556666654 7799999999999999987532 111 1221111100 0112334
Q ss_pred eEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 148 DIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 148 D~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
|+|++ . .. ...+....+.|+|+|.+++.-.
T Consensus 96 ~~v~~-~----~~----~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 96 AAVVT-A----VS----KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp EEEES-S----CC----HHHHHHHHHHEEEEEEEEECCC
T ss_pred eEEee-c----CC----HHHHHHHHHHhccCCceEeccc
Confidence 44433 2 22 2467889999999999988543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.88 E-value=0.24 Score=41.42 Aligned_cols=98 Identities=14% Similarity=0.099 Sum_probs=64.1
Q ss_pred CCCCeEEEEcC--CccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGC--GAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+||=-|+ |.|.++.+|++.. +++|+++--+++-.+.+++...... +.+. +...+ .......+.+|+|+
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~v--i~~~--~~~~~-~~~~~~~~gvD~vi 103 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEV--LARE--DVMAE-RIRPLDKQRWAAAV 103 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEE--EECC------------CCSCCEEEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhccccee--eecc--hhHHH-HHHHhhccCcCEEE
Confidence 56888998885 4578888888875 8999999999998888887543211 1111 11001 11122456899988
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEec
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
-...= ..+.+..+.|+|||.++..-.
T Consensus 104 d~vgg---------~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 104 DPVGG---------RTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp ECSTT---------TTHHHHHHTEEEEEEEEECSC
T ss_pred EcCCc---------hhHHHHHHHhCCCceEEEeec
Confidence 74321 147788999999999988543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.17 E-value=0.73 Score=38.10 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=62.2
Q ss_pred hHHHHHHHH-hcCCCCCCCCeEEEeCCcccHHHHH-HHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 360 SAHLMAAVL-ARNPTIVAGKKVLELGCGCGGICSM-VAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 360 ~~~~l~~~l-~~~~~~~~~~~vLelG~G~G~l~~~-~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
++...+... .....+.+|.+||=+|||-+++... +++ .++.+|+++|.+++-++.+++.- .. . .+
T Consensus 11 ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G----a~------~--~i 78 (176)
T d2jhfa2 11 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG----AT------E--CV 78 (176)
T ss_dssp THHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT----CS------E--EE
T ss_pred cHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC----Ce------e--EE
Confidence 344444433 3445677899999999984433322 222 35679999999998888887752 11 1 12
Q ss_pred ecCC-Cccch-hhhhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 437 EWGN-RDHIE-AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 437 ~w~~-~~~~~-~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
++.+ .+... ......++.+|+|+ +....+..++....++ +.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~G~D~vi------d~~G~~~~~~~a~~~~-~~~~ 123 (176)
T d2jhfa2 79 NPQDYKKPIQEVLTEMSNGGVDFSF------EVIGRLDTMVTALSCC-QEAY 123 (176)
T ss_dssp CGGGCSSCHHHHHHHHTTSCBSEEE------ECSCCHHHHHHHHHHB-CTTT
T ss_pred ecCCchhHHHHHHHHHhcCCCCEEE------ecCCchhHHHHHHHHH-hcCC
Confidence 2222 12222 22234456777655 4444566677777777 6543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=0.37 Score=42.95 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=60.1
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh--
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-- 449 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-- 449 (564)
++++.||=-|++.| ++..++.. .+.+|+++|.+++-++.+.+-+...+.. .++.+...|..+.+..+.+..
T Consensus 8 lk~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~---~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 8 WRDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYP---GTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp GTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCS---SEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC---ceEEEEEccCCCHHHHHHHHHHH
Confidence 68999999999987 88766653 4568999999998888877766665432 467777888877655433321
Q ss_pred -hcCCCccEEEEec
Q 008457 450 -ENNEGFEVILGTD 462 (564)
Q Consensus 450 -~~~~~fD~Ii~~d 462 (564)
-..++.|++|.+-
T Consensus 84 ~~~~g~iD~lVnnA 97 (257)
T d1xg5a_ 84 RSQHSGVDICINNA 97 (257)
T ss_dssp HHHHCCCSEEEECC
T ss_pred HHhcCCCCEEEecc
Confidence 1236899988654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=90.09 E-value=0.32 Score=38.15 Aligned_cols=92 Identities=7% Similarity=0.005 Sum_probs=63.2
Q ss_pred CCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcccccCCChhH
Q 008457 84 CGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFVLSAVSPEK 163 (564)
Q Consensus 84 cG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~vl~~~~~~~ 163 (564)
||.|..+..+++...+..++.+|.++...+.++.. .+.++.+|....+......-...+.+++.. +.+.
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~d~ 74 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS------GANFVHGDPTRVSDLEKANVRGARAVIVNL-----ESDS 74 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT------TCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SSHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc------CccccccccCCHHHHHHhhhhcCcEEEEec-----cchh
Confidence 56677888888887777899999999988877543 467888998766543233345677777722 2234
Q ss_pred HHHHHHHHHhccCCCeEEEEEec
Q 008457 164 MSLVLQNIKKVLKPTGYVLFRDY 186 (564)
Q Consensus 164 ~~~~l~~~~r~LkpgG~lii~~~ 186 (564)
....+....+.+.|...++....
T Consensus 75 ~n~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 75 ETIHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp HHHHHHHHHHHHCSSSCEEEECS
T ss_pred hhHHHHHHHHHHCCCceEEEEEc
Confidence 44455566677888887776543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=90.04 E-value=0.19 Score=39.75 Aligned_cols=94 Identities=10% Similarity=0.078 Sum_probs=53.7
Q ss_pred eEEEEcCCccccHHHHHHh--CCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEccc
Q 008457 78 DVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVFV 155 (564)
Q Consensus 78 ~VLDiGcG~G~~~~~l~~~--~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~v 155 (564)
+++=+|+| .++..+++. ..+.+|+.+|.+++.++.++... ...+.+|..+........-...|.|++.
T Consensus 2 ~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~------~~~~~gd~~~~~~l~~a~i~~a~~vi~~-- 71 (134)
T d2hmva1 2 QFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA------THAVIANATEENELLSLGIRNFEYVIVA-- 71 (134)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC------SEEEECCTTCTTHHHHHTGGGCSEEEEC--
T ss_pred EEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC------CcceeeecccchhhhccCCccccEEEEE--
Confidence 34455665 455444433 12788999999999998876542 3566788766543222222456777662
Q ss_pred ccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 156 LSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 156 l~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
++.++....+..+.+.+.|...++..
T Consensus 72 ---~~~~~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 72 ---IGANIQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp ---CCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ---cCchHHhHHHHHHHHHHcCCCcEEee
Confidence 22223334444455555566676654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=89.80 E-value=0.29 Score=41.06 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=66.7
Q ss_pred hhccCCCCCeEEEEcCCc--cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc----cCCC
Q 008457 69 RYFSGAGRKDVLEVGCGA--GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQI 142 (564)
Q Consensus 69 ~~l~~~~~~~VLDiGcG~--G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~----~~~~ 142 (564)
+....+++.+||-.|++. |..+..+++.. +++|++++.+++..+.+++.... ..+ +...++. ....
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga~-----~vi--~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFD-----AAF--NYKTVNSLEEALKKA 94 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCS-----EEE--ETTSCSCHHHHHHHH
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhhh-----hhc--ccccccHHHHHHHHh
Confidence 334447899999888754 67778888876 78999999999988888876431 111 1111111 0011
Q ss_pred CCCceeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 143 SPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
....+|+|+- .+. ...+++..+.|+|+|.++..
T Consensus 95 ~~~Gvd~v~D-----~vG----~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 95 SPDGYDCYFD-----NVG----GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp CTTCEEEEEE-----SSC----HHHHHHHGGGEEEEEEEEEC
T ss_pred hcCCCceeEE-----ecC----chhhhhhhhhccCCCeEEee
Confidence 3456999887 332 23678899999999999874
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.39 E-value=0.53 Score=38.75 Aligned_cols=103 Identities=13% Similarity=0.177 Sum_probs=61.6
Q ss_pred HHHHhcCCCCCCCCeEEEeCCc--ccHHHHHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q 008457 365 AAVLARNPTIVAGKKVLELGCG--CGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR 441 (564)
Q Consensus 365 ~~~l~~~~~~~~~~~vLelG~G--~G~l~~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~ 441 (564)
+..........++.+||=+||| .|.++..++. .+..+|+++|.+++-++.+++. +.. ..++..+.
T Consensus 16 a~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~--------~~i~~~~~ 83 (170)
T d1jvba2 16 TYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD--------YVINASMQ 83 (170)
T ss_dssp HHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS--------EEEETTTS
T ss_pred HHHHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc--------eeeccCCc
Confidence 4444444556688999999974 2322332333 4667999999999888888764 221 11233333
Q ss_pred ccchhhhhh-cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 442 DHIEAIKEE-NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 442 ~~~~~~~~~-~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+..+..... .++.||+|+- ...-+..++..-+++ +++|
T Consensus 84 ~~~~~~~~~~~~~~~d~vid------~~g~~~~~~~a~~~l-~~~G 122 (170)
T d1jvba2 84 DPLAEIRRITESKGVDAVID------LNNSEKTLSVYPKAL-AKQG 122 (170)
T ss_dssp CHHHHHHHHTTTSCEEEEEE------SCCCHHHHTTGGGGE-EEEE
T ss_pred CHHHHHHHHhhcccchhhhc------ccccchHHHhhhhhc-ccCC
Confidence 333333332 3456887662 344566677778889 8877
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.10 E-value=0.17 Score=42.24 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=62.3
Q ss_pred hccCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEE-ecCCcc--cccCCCCCC
Q 008457 70 YFSGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFV-CDLISD--DLSRQISPS 145 (564)
Q Consensus 70 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~-~d~~~~--~~~~~~~~~ 145 (564)
....+++.+||-+|+|. |..+..+++.....+|+++|.+++-.+.+++.... ..+. .+..+. ........+
T Consensus 23 ~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~-----~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2jhfa2 23 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT-----ECVNPQDYKKPIQEVLTEMSNG 97 (176)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-----EEECGGGCSSCHHHHHHHHTTS
T ss_pred hhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe-----eEEecCCchhHHHHHHHHHhcC
Confidence 34458999999999975 44555666666567999999999999999886431 1111 010000 000011345
Q ss_pred ceeEEEEcccccCCChhHHHHHHHHHHhccCCC-eEEEEE
Q 008457 146 SIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPT-GYVLFR 184 (564)
Q Consensus 146 ~fD~V~~~~vl~~~~~~~~~~~l~~~~r~Lkpg-G~lii~ 184 (564)
.+|+|+-..... ..+......++++ |.+++.
T Consensus 98 G~D~vid~~G~~--------~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 98 GVDFSFEVIGRL--------DTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp CBSEEEECSCCH--------HHHHHHHHHBCTTTCEEEEC
T ss_pred CCCEEEecCCch--------hHHHHHHHHHhcCCcceEEe
Confidence 789988854322 3456667777776 565554
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.07 E-value=0.91 Score=37.37 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=62.0
Q ss_pred hHHHHHHHHh-cCCCCCCCCeEEEeCCcccHHHHHHHh--cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEe
Q 008457 360 SAHLMAAVLA-RNPTIVAGKKVLELGCGCGGICSMVAA--GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 436 (564)
Q Consensus 360 ~~~~l~~~l~-~~~~~~~~~~vLelG~G~G~l~~~~~~--~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l 436 (564)
++...+.... ....+.++.+||=+|||.+++.....+ .++..|+++|.+++-++.+++- +.. . .+
T Consensus 11 ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~----GAd------~--~i 78 (175)
T d1cdoa2 11 CGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GAT------D--FV 78 (175)
T ss_dssp THHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCC------E--EE
T ss_pred cHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc----CCc------E--EE
Confidence 3444444343 455677899999999998655443332 4577999999999888776652 221 1 22
Q ss_pred ecCCCc-cchhh-hhhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 437 EWGNRD-HIEAI-KEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 437 ~w~~~~-~~~~~-~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
+..+.+ ..... .......+|+|+ +..-....+.....++ +++|
T Consensus 79 n~~~~~~~~~~~~~~~~~~G~d~vi------d~~G~~~~~~~a~~~~-~~g~ 123 (175)
T d1cdoa2 79 NPNDHSEPISQVLSKMTNGGVDFSL------ECVGNVGVMRNALESC-LKGW 123 (175)
T ss_dssp CGGGCSSCHHHHHHHHHTSCBSEEE------ECSCCHHHHHHHHHTB-CTTT
T ss_pred cCCCcchhHHHHHHhhccCCcceee------eecCCHHHHHHHHHHh-hCCC
Confidence 332222 11121 223345677664 4444566677777777 5543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.90 E-value=0.23 Score=44.71 Aligned_cols=55 Identities=18% Similarity=0.077 Sum_probs=46.0
Q ss_pred hHHHHhhhccCCCCCeEEEEcCCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhccc
Q 008457 63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD 120 (564)
Q Consensus 63 ~~~~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~ 120 (564)
+.+.+.+... .++..|||-=||+|..+....+. +.+.+|+|+++...+.|+++..
T Consensus 196 L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 196 VIERLVRALS-HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLT 250 (279)
T ss_dssp HHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHH
T ss_pred HHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHH
Confidence 4445555443 78999999999999998887777 8899999999999999998865
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.77 E-value=0.12 Score=43.27 Aligned_cols=101 Identities=8% Similarity=-0.070 Sum_probs=63.4
Q ss_pred ccCCCCCeEEEEcCCc-cccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccc---cCCCCCCc
Q 008457 71 FSGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL---SRQISPSS 146 (564)
Q Consensus 71 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~~ 146 (564)
...+++.+||=.|||. |.++..+++......|+++|.+++-++.+++.-.. .++...-..... ......+.
T Consensus 24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~-----~~i~~~~~~~~~~~~~~~~~~~g 98 (176)
T d2fzwa2 24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-----ECINPQDFSKPIQEVLIEMTDGG 98 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-----EEECGGGCSSCHHHHHHHHTTSC
T ss_pred hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc-----EEEeCCchhhHHHHHHHHHcCCC
Confidence 3458899999999884 55666667665446899999999999999875421 111110000000 00012356
Q ss_pred eeEEEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 147 IDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 147 fD~V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
+|+|+-+.. -...++....++++||.+++.
T Consensus 99 ~D~vid~~G--------~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 99 VDYSFECIG--------NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp BSEEEECSC--------CHHHHHHHHHTBCTTTCEEEE
T ss_pred CcEeeecCC--------CHHHHHHHHHhhcCCceeEEE
Confidence 899988533 124677888999998776654
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.47 E-value=0.79 Score=41.68 Aligned_cols=90 Identities=18% Similarity=0.277 Sum_probs=61.7
Q ss_pred CCCCCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh
Q 008457 372 PTIVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK 448 (564)
Q Consensus 372 ~~~~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~ 448 (564)
|..++|+.+|=-|++.| ++..++.. .+.+|+++|.+++-++.+.+.+..+.......++.+...|..+.+....+.
T Consensus 7 ~g~L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~ 85 (297)
T d1yxma1 7 PGLLQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV 85 (297)
T ss_dssp TTTTTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence 45679999999999987 77665542 456899999998888777766665443323356777778877665544332
Q ss_pred h---hcCCCccEEEEec
Q 008457 449 E---ENNEGFEVILGTD 462 (564)
Q Consensus 449 ~---~~~~~fD~Ii~~d 462 (564)
. -..++.|++|.+-
T Consensus 86 ~~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 86 KSTLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHHhCCeEEEEeec
Confidence 2 1235899988653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=88.11 E-value=0.55 Score=38.78 Aligned_cols=94 Identities=16% Similarity=0.075 Sum_probs=56.6
Q ss_pred CCCCCCeEEEeCCcccHHHHHHH--hcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhh
Q 008457 373 TIVAGKKVLELGCGCGGICSMVA--AGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE 450 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~~~--~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 450 (564)
...++.+||=+|||..++..... +.++..|+++|.+++-++.+++. +.. . .++..++ ..+.....
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga~------~--~i~~~~~-~~~~~~~~ 95 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD------H--VVDARRD-PVKQVMEL 95 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS------E--EEETTSC-HHHHHHHH
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----ccc------e--eecCccc-HHHHHHHh
Confidence 34578899999998654443322 24678999999998877777753 211 1 1233222 22222222
Q ss_pred -cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 451 -NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 451 -~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
....+|+|+ +...-...++...+++ +++|
T Consensus 96 ~~~~g~d~vi------d~~g~~~~~~~a~~~l-~~~G 125 (172)
T d1h2ba2 96 TRGRGVNVAM------DFVGSQATVDYTPYLL-GRMG 125 (172)
T ss_dssp TTTCCEEEEE------ESSCCHHHHHHGGGGE-EEEE
T ss_pred hCCCCceEEE------EecCcchHHHHHHHHH-hCCC
Confidence 334566554 4444556678888888 8877
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.09 E-value=0.84 Score=40.38 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=63.0
Q ss_pred CCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh---
Q 008457 376 AGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE--- 449 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~--- 449 (564)
.|+.+|=-|++.| ++..++.. .+.+|+++|.+++.++.+...+..... ..++.+...|..+.+..+.+..
T Consensus 2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (254)
T d2gdza1 2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE---PQKTLFIQCDVADQQQLRDTFRKVV 77 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC---GGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC---CCcEEEEEeecCCHHHHHHHHHHHH
Confidence 6889999999987 77665543 456899999999888776665543221 1457777788876654433321
Q ss_pred hcCCCccEEEEeceeeCCCChHHHH
Q 008457 450 ENNEGFEVILGTDVSYIPEAILPLF 474 (564)
Q Consensus 450 ~~~~~fD~Ii~~d~~y~~~~~~~l~ 474 (564)
-..++.|++|.+--+.....++..+
T Consensus 78 ~~~G~iDilVnnAg~~~~~~~~~~~ 102 (254)
T d2gdza1 78 DHFGRLDILVNNAGVNNEKNWEKTL 102 (254)
T ss_dssp HHHSCCCEEEECCCCCCSSSHHHHH
T ss_pred HHcCCcCeecccccccccccchhee
Confidence 1235899999776666665544433
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=88.07 E-value=7.9 Score=34.59 Aligned_cols=68 Identities=10% Similarity=0.059 Sum_probs=49.9
Q ss_pred CeEEEEcCCccccHHHHHHhCCCcEE-EEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 77 KDVLEVGCGAGNTIFPLIAAYPDVFV-YACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 77 ~~VLDiGcG~G~~~~~l~~~~~~~~v-~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
++|||+=||.|.+...|.+. |.++ .++|+++.+.+..+.+.. -....+|+...... .+ ...|+++...
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~~-----~~~~~~Di~~~~~~-~~--~~~dll~~g~ 69 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS-----AKLIKGDISKISSD-EF--PKCDGIIGGP 69 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHCC-----SEEEESCTTTSCGG-GS--CCCSEEEECC
T ss_pred CeEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC-----CCCccCChhhCCHh-Hc--ccccEEeecc
Confidence 47999999999999888877 5554 499999999988777653 24567888654322 22 3589998743
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=87.90 E-value=0.17 Score=42.14 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=61.6
Q ss_pred cCCCCCeEEEEcC-C-ccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeE
Q 008457 72 SGAGRKDVLEVGC-G-AGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI 149 (564)
Q Consensus 72 ~~~~~~~VLDiGc-G-~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~ 149 (564)
...++.+||-.|+ | .|..+..+++.. +++|++++.+++.++.+++.... .. .|..+...... ....+|+
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~lGa~-----~~--i~~~~~~~~~~-~~~g~D~ 94 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAE-----EA--ATYAEVPERAK-AWGGLDL 94 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCS-----EE--EEGGGHHHHHH-HTTSEEE
T ss_pred CCCCCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccccccc-----ee--eehhhhhhhhh-ccccccc
Confidence 3478999999884 4 377888888875 78999999999888888765321 11 12211110000 2356999
Q ss_pred EEEcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 150 VTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 150 V~~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
|+-... + .+.+..+.|+|+|+++..
T Consensus 95 v~d~~G------~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 95 VLEVRG------K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEECSC------T----THHHHHTTEEEEEEEEEC
T ss_pred cccccc------h----hHHHHHHHHhcCCcEEEE
Confidence 887321 1 256678899999999874
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=87.83 E-value=5.7 Score=35.86 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=50.1
Q ss_pred CCCCeEEEEcCCccccHHHHHHhCCCcE-EEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEE
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAYPDVF-VYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~-v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~ 152 (564)
..+.+|||+=||.|.+...|.+. |.+ +.++|+++.+++..+.+.... .+.|+.+.... . -..+|+++.
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~~~------~~~Di~~~~~~-~--~~~~Dll~g 77 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK------PEGDITQVNEK-T--IPDHDILCA 77 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC------CBSCGGGSCGG-G--SCCCSEEEE
T ss_pred CCCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCCCC------CcCchhcCchh-h--cceeeeeec
Confidence 46799999999999999988777 555 456999999999888776421 13566543321 1 235799888
Q ss_pred cc
Q 008457 153 VF 154 (564)
Q Consensus 153 ~~ 154 (564)
..
T Consensus 78 gp 79 (327)
T d2c7pa1 78 GF 79 (327)
T ss_dssp EC
T ss_pred cc
Confidence 43
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.45 E-value=0.78 Score=40.35 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=60.2
Q ss_pred CCCCeEEEEcCCcc---ccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCC------CC
Q 008457 74 AGRKDVLEVGCGAG---NTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI------SP 144 (564)
Q Consensus 74 ~~~~~VLDiGcG~G---~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~ 144 (564)
-.|+.+|--|++.| ..+..|++. |.+|+.+|.+++.++...+.....+.++.++.+|+.+.+--..+ ..
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 35788888898887 344555666 89999999999988877776665667888999999765421100 23
Q ss_pred CceeEEEEcccccCC
Q 008457 145 SSIDIVTMVFVLSAV 159 (564)
Q Consensus 145 ~~fD~V~~~~vl~~~ 159 (564)
+..|+++.+..+.+.
T Consensus 83 g~idilinnag~~~~ 97 (244)
T d1yb1a_ 83 GDVSILVNNAGVVYT 97 (244)
T ss_dssp CCCSEEEECCCCCCC
T ss_pred CCCceeEeecccccc
Confidence 578999987766544
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=87.19 E-value=0.64 Score=44.10 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=40.9
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc--C-CCEEEEEcCChhHHHHHHHHHHhcCCC
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG--S-ADLVVATDGDSIALDLLAQNVTANLKP 425 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~--~-~~~v~~tD~~~~~l~~~~~n~~~n~~~ 425 (564)
+.++..++|+||-.|..+..++.. . ..+|++.|.+|...+.+++|+..|...
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~ 264 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT 264 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence 346779999999999555444432 2 358999999999999999999988654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=87.02 E-value=0.77 Score=40.82 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=57.1
Q ss_pred CCCCeEEEeCCcccHHHHHHHh---cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh--
Q 008457 375 VAGKKVLELGCGCGGICSMVAA---GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-- 449 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~---~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-- 449 (564)
++|+++|=-|++.| ++..++. ..+.+|+++|.+++.++.+.+.+...+ .++.....|..+.+..+.+..
T Consensus 3 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~~ 76 (260)
T d1zema1 3 FNGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKG-----VEARSYVCDVTSEEAVIGTVDSV 76 (260)
T ss_dssp TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-----SCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHHH
Confidence 58999999999987 7765554 345689999999999888887776543 356777788876654433321
Q ss_pred -hcCCCccEEEEe
Q 008457 450 -ENNEGFEVILGT 461 (564)
Q Consensus 450 -~~~~~fD~Ii~~ 461 (564)
-..++.|++|.+
T Consensus 77 ~~~~g~iDilVnn 89 (260)
T d1zema1 77 VRDFGKIDFLFNN 89 (260)
T ss_dssp HHHHSCCCEEEEC
T ss_pred HHHhCCCCeehhh
Confidence 123589998854
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=86.90 E-value=0.82 Score=40.57 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=57.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh--
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-- 449 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-- 449 (564)
++|+++|=-|++.| ++..++.. .+.+|+++|.+++.++.+...+...... .++.....|..+.+..+.+..
T Consensus 2 l~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~---~~~~~~~~Dvt~~~~v~~~~~~~ 77 (258)
T d1iy8a_ 2 FTDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPD---AEVLTTVADVSDEAQVEAYVTAT 77 (258)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTT---CCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCC---CeEEEEeccCCCHHHHHHHHHHH
Confidence 47899999999987 77555542 4568999999998888777666554432 456777788876655443321
Q ss_pred -hcCCCccEEEEec
Q 008457 450 -ENNEGFEVILGTD 462 (564)
Q Consensus 450 -~~~~~fD~Ii~~d 462 (564)
-..++.|++|.+-
T Consensus 78 ~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 78 TERFGRIDGFFNNA 91 (258)
T ss_dssp HHHHSCCSEEEECC
T ss_pred HHHhCCCCEEEECC
Confidence 1235899988653
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.61 E-value=0.67 Score=41.63 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=60.0
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh--
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-- 449 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-- 449 (564)
++|+++|=-|++.| ++...+.. .+.+|+++|.+++-++.+.+.+...+.. ..++.+...|..+.+..+.+..
T Consensus 2 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (274)
T d1xhla_ 2 FSGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVP--AEKINAVVADVTEASGQDDIINTT 78 (274)
T ss_dssp CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcceEEEEeeCCCHHHHHHHHHHH
Confidence 47899999999987 77665543 4568999999999888888888776542 2467788888877655443321
Q ss_pred -hcCCCccEEEEe
Q 008457 450 -ENNEGFEVILGT 461 (564)
Q Consensus 450 -~~~~~fD~Ii~~ 461 (564)
-..++.|++|.+
T Consensus 79 ~~~~G~iDilVnn 91 (274)
T d1xhla_ 79 LAKFGKIDILVNN 91 (274)
T ss_dssp HHHHSCCCEEEEC
T ss_pred HHHcCCceEEEee
Confidence 123589998865
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=86.16 E-value=0.62 Score=38.91 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=44.4
Q ss_pred CCCCCeEEEeCCcccHHHHH----HHhcCCCEEEEEcCChhHHHHHHH---HHHhcCCCCCCCceEEEEeecCCCccchh
Q 008457 374 IVAGKKVLELGCGCGGICSM----VAAGSADLVVATDGDSIALDLLAQ---NVTANLKPPFLAKLITKRLEWGNRDHIEA 446 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~----~~~~~~~~v~~tD~~~~~l~~~~~---n~~~n~~~~~~~~i~~~~l~w~~~~~~~~ 446 (564)
..++++||=|||| | .+.. ++..+.++++..+.+++.++.++. .+..+. ...+...+|.+......
T Consensus 15 ~l~~k~vlIlGaG-G-aarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~ 86 (182)
T d1vi2a1 15 DIKGKTMVLLGAG-G-ASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT------DCVVTVTDLADQQAFAE 86 (182)
T ss_dssp CCTTCEEEEECCS-H-HHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS------SCEEEEEETTCHHHHHH
T ss_pred CcCCCEEEEECCc-H-HHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhc------CcceEeeecccccchhh
Confidence 4588999999999 5 3322 223467799999987765554432 222222 12345566765432211
Q ss_pred hhhhcCCCccEEEEec
Q 008457 447 IKEENNEGFEVILGTD 462 (564)
Q Consensus 447 ~~~~~~~~fD~Ii~~d 462 (564)
. ...+|+||-+-
T Consensus 87 ~----~~~~diiIN~T 98 (182)
T d1vi2a1 87 A----LASADILTNGT 98 (182)
T ss_dssp H----HHTCSEEEECS
T ss_pred h----hcccceecccc
Confidence 1 13679998653
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.01 E-value=1.5 Score=36.20 Aligned_cols=106 Identities=16% Similarity=0.100 Sum_probs=61.6
Q ss_pred hHHHHHHHHh-cCCCCCCCCeEEEeCCcccHHHHHH---HhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEE
Q 008457 360 SAHLMAAVLA-RNPTIVAGKKVLELGCGCGGICSMV---AAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 435 (564)
Q Consensus 360 ~~~~l~~~l~-~~~~~~~~~~vLelG~G~G~l~~~~---~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~ 435 (564)
.+...|.+.+ ....+.++.+||=.|+..| ++.++ +...+.+|++++.+++-.+.+++. +.. . .
T Consensus 8 ~~~~TA~~al~~~~~~~~g~~VlI~ga~g~-vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----Ga~------~--v 74 (183)
T d1pqwa_ 8 VAYLTAWHSLCEVGRLSPGERVLIHSATGG-VGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GVE------Y--V 74 (183)
T ss_dssp HHHHHHHHHHHTTSCCCTTCEEEETTTTSH-HHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CCS------E--E
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCC-cccccchhhccccccceeeecccccccccccc----ccc------c--c
Confidence 3444454444 4445668899999885322 44443 334466899888877766766642 321 1 2
Q ss_pred eecCCCccchhhhhh-cCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 436 LEWGNRDHIEAIKEE-NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 436 l~w~~~~~~~~~~~~-~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
++..+.+..+.+... .+..||+|+ |++- .+.++.+.++| +++|
T Consensus 75 i~~~~~~~~~~v~~~t~~~g~d~v~--d~~g-----~~~~~~~~~~l-~~~G 118 (183)
T d1pqwa_ 75 GDSRSVDFADEILELTDGYGVDVVL--NSLA-----GEAIQRGVQIL-APGG 118 (183)
T ss_dssp EETTCSTHHHHHHHHTTTCCEEEEE--ECCC-----THHHHHHHHTE-EEEE
T ss_pred ccCCccCHHHHHHHHhCCCCEEEEE--eccc-----chHHHHHHHHh-cCCC
Confidence 344444334444443 345799887 4443 23566677889 8877
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.34 E-value=1.7 Score=39.87 Aligned_cols=75 Identities=19% Similarity=0.113 Sum_probs=50.3
Q ss_pred CCeEEEEcCCccccHHHHHHhCCCcE-EEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEEEcc
Q 008457 76 RKDVLEVGCGAGNTIFPLIAAYPDVF-VYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMVF 154 (564)
Q Consensus 76 ~~~VLDiGcG~G~~~~~l~~~~~~~~-v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 154 (564)
+.+|+|+-||.|.+...|.+.+-..+ +.++|+++.+++..+.+.. ...+.+.|+.+.... .++...+|+++...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~----~~~~~~~di~~~~~~-~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGITLE-EFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCCHH-HHHHHCCSEEEECC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC----CCCcccCchhhCCHh-HcCCCCccEEEeec
Confidence 57899999999999888877632234 5689999999988877653 234555666533211 12223678888744
Q ss_pred c
Q 008457 155 V 155 (564)
Q Consensus 155 v 155 (564)
-
T Consensus 77 P 77 (343)
T d1g55a_ 77 P 77 (343)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.32 E-value=1.8 Score=37.88 Aligned_cols=85 Identities=22% Similarity=0.203 Sum_probs=60.4
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh-
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE- 449 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~- 449 (564)
...|+.+|=-|++.| ++..++.. .+.+|+++|.+++-++.+.+.+...+ .++.....|..+.+..+.+..
T Consensus 4 ~l~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~ 77 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG-----AKVHTFVVDCSNREDIYSSAKK 77 (244)
T ss_dssp CCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEeeCCCHHHHHHHHHH
Confidence 358899999999998 87666543 45689999999999988888876543 456777788776654433321
Q ss_pred --hcCCCccEEEEecee
Q 008457 450 --ENNEGFEVILGTDVS 464 (564)
Q Consensus 450 --~~~~~fD~Ii~~d~~ 464 (564)
-..+..|+++.+--+
T Consensus 78 i~~~~g~idilinnag~ 94 (244)
T d1yb1a_ 78 VKAEIGDVSILVNNAGV 94 (244)
T ss_dssp HHHHTCCCSEEEECCCC
T ss_pred HHHHcCCCceeEeeccc
Confidence 135679998866433
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.31 E-value=0.82 Score=40.91 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=59.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh--
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-- 449 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-- 449 (564)
++|+++|=-|++.| ++..++.. .+.+|+++|.+++-++.+.+.+...+.. ..++.....|..+.+..+.+..
T Consensus 3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 3 FSNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVS--EKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC--GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--CCceEEEEccCCCHHHHHHHHHHH
Confidence 58999999999987 77665543 4568999999999888888877765432 2457778888876655443321
Q ss_pred -hcCCCccEEEEe
Q 008457 450 -ENNEGFEVILGT 461 (564)
Q Consensus 450 -~~~~~fD~Ii~~ 461 (564)
...++.|++|.+
T Consensus 80 ~~~~g~iDilvnn 92 (272)
T d1xkqa_ 80 LKQFGKIDVLVNN 92 (272)
T ss_dssp HHHHSCCCEEEEC
T ss_pred HHHhCCceEEEeC
Confidence 123589998865
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=85.30 E-value=1.6 Score=38.41 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=59.3
Q ss_pred CCCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh-
Q 008457 374 IVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE- 449 (564)
Q Consensus 374 ~~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~- 449 (564)
.++++.+|=-|++.| ++..++.. .+.+|+++|.+++.++.+.+.+...+ .++.....|..+.+..+.+..
T Consensus 7 ~lenKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-----~~~~~~~~Dvt~~~~v~~~~~~ 80 (251)
T d2c07a1 7 CGENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-----YESSGYAGDVSKKEEISEVINK 80 (251)
T ss_dssp CCSSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 357899999999887 77666543 45699999999988888877776543 356677778776654433321
Q ss_pred --hcCCCccEEEEecee
Q 008457 450 --ENNEGFEVILGTDVS 464 (564)
Q Consensus 450 --~~~~~fD~Ii~~d~~ 464 (564)
-..++.|++|.+--+
T Consensus 81 ~~~~~g~iDilvnnag~ 97 (251)
T d2c07a1 81 ILTEHKNVDILVNNAGI 97 (251)
T ss_dssp HHHHCSCCCEEEECCCC
T ss_pred HHHhcCCceeeeecccc
Confidence 134689998866433
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=85.13 E-value=3.4 Score=36.23 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=44.7
Q ss_pred CCCCeEEEEcCCcc---ccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCc
Q 008457 74 AGRKDVLEVGCGAG---NTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS 135 (564)
Q Consensus 74 ~~~~~VLDiGcG~G---~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~ 135 (564)
.+++++|=.|+..| ..+..|++. |.+|+.++.+++.++.+.+.....+..+.++.+|+..
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~ 66 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS 66 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC
Confidence 36889999998876 334555666 8899999999988887777665555667777777753
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=85.02 E-value=1.7 Score=35.77 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=59.5
Q ss_pred CCCCCCCCeEEEeCCcccHHHHH---HHhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh
Q 008457 371 NPTIVAGKKVLELGCGCGGICSM---VAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI 447 (564)
Q Consensus 371 ~~~~~~~~~vLelG~G~G~l~~~---~~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~ 447 (564)
...+.++.+||=.|+|.| ++.+ ++...+.+|+++|.+++-.+.+++. +.. ..++..+.+..+.+
T Consensus 23 ~~~l~~g~~Vlv~ga~g~-vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~--------~vi~~~~~d~~~~v 89 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGG-VGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW--------QVINYREEDLVERL 89 (179)
T ss_dssp TSCCCTTCEEEESSTTBH-HHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS--------EEEETTTSCHHHHH
T ss_pred HhCCCCCCEEEEEccccc-cchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe--------EEEECCCCCHHHHH
Confidence 446678999999987754 4433 3344567999999999888887753 221 22455554444445
Q ss_pred hhhc-CCCccEEEEeceeeCCCChHHHHHHHHHHhhccCC
Q 008457 448 KEEN-NEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 486 (564)
Q Consensus 448 ~~~~-~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g 486 (564)
.++. +..+|+|+ |+.-. +.+.....++ +++|
T Consensus 90 ~~~t~g~g~d~v~--d~~g~-----~~~~~~~~~l-~~~G 121 (179)
T d1qora2 90 KEITGGKKVRVVY--DSVGR-----DTWERSLDCL-QRRG 121 (179)
T ss_dssp HHHTTTCCEEEEE--ECSCG-----GGHHHHHHTE-EEEE
T ss_pred HHHhCCCCeEEEE--eCccH-----HHHHHHHHHH-hcCC
Confidence 4443 45688766 34422 2356677788 8876
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=84.61 E-value=0.99 Score=37.00 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=29.9
Q ss_pred CCCCCCeEEEeCCcccHHHHH--HHhcCCCEEEEEcCChhHHHHHHHH
Q 008457 373 TIVAGKKVLELGCGCGGICSM--VAAGSADLVVATDGDSIALDLLAQN 418 (564)
Q Consensus 373 ~~~~~~~vLelG~G~G~l~~~--~~~~~~~~v~~tD~~~~~l~~~~~n 418 (564)
...++++||=||||--+-+.. +...+.++|+.+.-+++-.+.+...
T Consensus 13 ~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~ 60 (167)
T d1npya1 13 HLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAAL 60 (167)
T ss_dssp TCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHh
Confidence 334788999999994322222 2234567899999988765555443
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.37 E-value=1.3 Score=39.08 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=57.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh--
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-- 449 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-- 449 (564)
++|+++|=-|++.| ++..++.. .+.+|+++|.+++.++.+.+.+...+ .++.....|..+.+..+.+..
T Consensus 9 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-----~~~~~~~~Dvs~~~~~~~~~~~~ 82 (255)
T d1fmca_ 9 LDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-----GQAFACRCDITSEQELSALADFA 82 (255)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-----CcEEEEEccCCCHHHHHHHHHHH
Confidence 48999999999987 87665543 45689999999988888777766543 356667777776554433321
Q ss_pred -hcCCCccEEEEec
Q 008457 450 -ENNEGFEVILGTD 462 (564)
Q Consensus 450 -~~~~~fD~Ii~~d 462 (564)
-..++.|+++.+-
T Consensus 83 ~~~~g~iDilvnnA 96 (255)
T d1fmca_ 83 ISKLGKVDILVNNA 96 (255)
T ss_dssp HHHHSSCCEEEECC
T ss_pred HHHcCCCCEeeeCC
Confidence 1225899988653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.94 E-value=0.85 Score=40.44 Aligned_cols=110 Identities=16% Similarity=0.079 Sum_probs=71.1
Q ss_pred CCCCCeEEEEcCCcc---ccHHHHHHhCCCcEEEEE-eCChHHHHHHHhcccccCCCeeEEEecCCcccccCC------C
Q 008457 73 GAGRKDVLEVGCGAG---NTIFPLIAAYPDVFVYAC-DFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQ------I 142 (564)
Q Consensus 73 ~~~~~~VLDiGcG~G---~~~~~l~~~~~~~~v~~i-D~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~------~ 142 (564)
+..++++|=.|++.| ..+..|++. |++|+.+ +-++..++.+.+.....+.++.++.+|+.+.+--.. -
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~--G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHH
Confidence 356888998886666 445566666 7888764 566777777777666566788899999875331000 0
Q ss_pred CCCceeEEEEcccccCCC------hhH-----------HHHHHHHHHhccCCCeEEEEE
Q 008457 143 SPSSIDIVTMVFVLSAVS------PEK-----------MSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 143 ~~~~fD~V~~~~vl~~~~------~~~-----------~~~~l~~~~r~LkpgG~lii~ 184 (564)
.-+..|+++.+....+.. .++ ...+.+.+...|+.+|.+++.
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 125799999987665542 122 234566666777777776654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=83.81 E-value=0.58 Score=38.56 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=63.7
Q ss_pred CCCCeEEEEcC--CccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGC--GAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+||--|+ |.|.++.+|++.. +++|+++.-+++-.+.+++.... .+ +...+...... .....+.+|+|+
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lGad---~v-i~~~~~~~~~~-~~~~~~gvd~vi 95 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGAS---EV-ISREDVYDGTL-KALSKQQWQGAV 95 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTCS---EE-EEHHHHCSSCC-CSSCCCCEEEEE
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhccc---ce-Eeccchhchhh-hcccCCCceEEE
Confidence 45667887774 4578888888875 78999999999888888775431 11 11112111111 122456799987
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEEe
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRD 185 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~~ 185 (564)
-. +. ...+.+..+.|+|+|.++..-
T Consensus 96 d~-----vg----g~~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 96 DP-----VG----GKQLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp ES-----CC----THHHHHHHTTEEEEEEEEECC
T ss_pred ec-----Cc----HHHHHHHHHHhccCceEEEee
Confidence 73 32 136788999999999998753
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=83.71 E-value=1.1 Score=39.83 Aligned_cols=84 Identities=14% Similarity=0.080 Sum_probs=59.8
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh--
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-- 449 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-- 449 (564)
++++.+|=-|++.| ++..++.. .+.+|+++|.+++.++.+.+.+...+.. ..++.....|..+.+..+.+..
T Consensus 3 l~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~ 79 (264)
T d1spxa_ 3 FAEKVAIITGSSNG-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVS--EQNVNSVVADVTTDAGQDEILSTT 79 (264)
T ss_dssp TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--cCceEEEEccCCCHHHHHHHHHHH
Confidence 48899999999987 77665543 4568999999999998888877765542 2457778888876655443322
Q ss_pred -hcCCCccEEEEe
Q 008457 450 -ENNEGFEVILGT 461 (564)
Q Consensus 450 -~~~~~fD~Ii~~ 461 (564)
-..++.|++|.+
T Consensus 80 ~~~~g~iDilvnn 92 (264)
T d1spxa_ 80 LGKFGKLDILVNN 92 (264)
T ss_dssp HHHHSCCCEEEEC
T ss_pred HHHhCCCCEeecc
Confidence 123589988854
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=83.52 E-value=1.6 Score=35.84 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=58.0
Q ss_pred CeEEEEcCCcc--ccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccc--cCCCeeEEEecCC-cccccCCCCCCceeEEE
Q 008457 77 KDVLEVGCGAG--NTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLI-SDDLSRQISPSSIDIVT 151 (564)
Q Consensus 77 ~~VLDiGcG~G--~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~--~~~~i~~~~~d~~-~~~~~~~~~~~~fD~V~ 151 (564)
++|--||+|.- .++..|++. |.+|+.+|.+++-++..++.... ............. ..+.... -...|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA--VKDADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH--HTTCSEEE
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH--hcCCCEEE
Confidence 57888999973 333455555 78999999999888877654211 0111111111000 0000000 13579888
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEE
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLF 183 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii 183 (564)
+. ++......+++++...|+++-.+++
T Consensus 78 i~-----v~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 78 IV-----VPAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp EC-----SCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EE-----EchhHHHHHHHHhhhccCCCCEEEE
Confidence 83 3334677899999999999876654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=83.42 E-value=1.8 Score=38.20 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=57.5
Q ss_pred CCCCeEEEeCCcccHHHHHHHh---cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhh----
Q 008457 375 VAGKKVLELGCGCGGICSMVAA---GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI---- 447 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~---~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~---- 447 (564)
.+|++||=.|++.| ++..++. ..+.+|+.+|.+++-++.+.+.+...+ ..+.+...|..+.+..+.+
T Consensus 4 L~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~-----~~~~~~~~D~s~~~~~~~~~~~~ 77 (258)
T d1ae1a_ 4 LKGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG-----LNVEGSVCDLLSRTERDKLMQTV 77 (258)
T ss_dssp CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEeecCCHHHHHHHHHHH
Confidence 48999999999987 7766553 345699999999988887777666544 3456667887766554333
Q ss_pred hhhcCCCccEEEEec
Q 008457 448 KEENNEGFEVILGTD 462 (564)
Q Consensus 448 ~~~~~~~fD~Ii~~d 462 (564)
.....+..|+++.+-
T Consensus 78 ~~~~~g~idilinna 92 (258)
T d1ae1a_ 78 AHVFDGKLNILVNNA 92 (258)
T ss_dssp HHHTTSCCCEEEECC
T ss_pred HHHhCCCcEEEeccc
Confidence 233346789888553
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=82.97 E-value=1.4 Score=35.86 Aligned_cols=94 Identities=20% Similarity=0.141 Sum_probs=57.0
Q ss_pred CCCeEEEeCCcccHHHHHHHh-cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhhhcCCC
Q 008457 376 AGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG 454 (564)
Q Consensus 376 ~~~~vLelG~G~G~l~~~~~~-~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~~~~~~ 454 (564)
+..+|+=||+|.-++..+..+ ..++.|++.|.+++.++.++.-...+ +... ..+...+. + .-..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~--------~~~~---~~~~~~l~---~-~~~~ 95 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR--------VELL---YSNSAEIE---T-AVAE 95 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG--------SEEE---ECCHHHHH---H-HHHT
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc--------ceee---hhhhhhHH---H-hhcc
Confidence 567999999998666655444 46789999999999998887654432 1221 11111111 1 1136
Q ss_pred ccEEEEeceeeCCCChHHHHHHHHHHhhccC
Q 008457 455 FEVILGTDVSYIPEAILPLFATAKELTASSN 485 (564)
Q Consensus 455 fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~ 485 (564)
.|+||++-.+-.......+-+.+-+.. ||+
T Consensus 96 aDivI~aalipG~~aP~lIt~~mv~~M-k~G 125 (168)
T d1pjca1 96 ADLLIGAVLVPGRRAPILVPASLVEQM-RTG 125 (168)
T ss_dssp CSEEEECCCCTTSSCCCCBCHHHHTTS-CTT
T ss_pred CcEEEEeeecCCcccCeeecHHHHhhc-CCC
Confidence 899998766655443333335555555 553
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=82.80 E-value=3.3 Score=36.16 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=54.5
Q ss_pred CCCCeEEEeCCcccHHHHHHHh---cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh--
Q 008457 375 VAGKKVLELGCGCGGICSMVAA---GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-- 449 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~---~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-- 449 (564)
++++++|=-|++.| ++...+. ..+.+|+++|.+++.++.+.+.+....- .++.....|..+.+..+.+..
T Consensus 3 l~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g----~~~~~~~~Dv~~~~~v~~~~~~~ 77 (251)
T d1vl8a_ 3 LRGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG----VETMAFRCDVSNYEEVKKLLEAV 77 (251)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC----CcEEEEEccCCCHHHHHHHHHHH
Confidence 47899999999987 7765554 2456899999998877666555433221 346666778776554433321
Q ss_pred -hcCCCccEEEEec
Q 008457 450 -ENNEGFEVILGTD 462 (564)
Q Consensus 450 -~~~~~fD~Ii~~d 462 (564)
-..++.|++|.+-
T Consensus 78 ~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 78 KEKFGKLDTVVNAA 91 (251)
T ss_dssp HHHHSCCCEEEECC
T ss_pred HHHcCCCCEEEECC
Confidence 1235899998653
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=82.45 E-value=1.2 Score=36.80 Aligned_cols=94 Identities=15% Similarity=0.082 Sum_probs=62.5
Q ss_pred CCCCeEEEEcC--CccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCceeEEE
Q 008457 74 AGRKDVLEVGC--GAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT 151 (564)
Q Consensus 74 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~fD~V~ 151 (564)
.++.+||-.|+ |.|..+.+|++.. |++|+++.-+++..+.+++.... .++ |.........+....+|.|+
T Consensus 30 ~~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lGad-----~vi--~~~~~~~~~~l~~~~~~~vv 101 (177)
T d1o89a2 30 PQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGAS-----RVL--PRDEFAESRPLEKQVWAGAI 101 (177)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTEE-----EEE--EGGGSSSCCSSCCCCEEEEE
T ss_pred CCCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhccc-----ccc--ccccHHHHHHHHhhcCCeeE
Confidence 34457776653 3577888888886 89999999999988888765321 122 22222222244566788875
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
- .+. ...+....+.|+++|.++..
T Consensus 102 D-----~Vg----g~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 102 D-----TVG----DKVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp E-----SSC----HHHHHHHHHTEEEEEEEEEC
T ss_pred E-----Ecc----hHHHHHHHHHhccccceEee
Confidence 3 332 23688899999999999885
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.35 E-value=1.8 Score=36.06 Aligned_cols=93 Identities=6% Similarity=0.074 Sum_probs=57.8
Q ss_pred CeEEEEc--CCccccHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccC---CCCCCceeEEE
Q 008457 77 KDVLEVG--CGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR---QISPSSIDIVT 151 (564)
Q Consensus 77 ~~VLDiG--cG~G~~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~~~fD~V~ 151 (564)
.+||-.| .|.|..+.++++......|+++..+++........... . ...|...+++.. ...+..+|+|+
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga-----d-~vi~~~~~~~~~~~~~~~~~GvDvv~ 105 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF-----D-AAVNYKTGNVAEQLREACPGGVDVYF 105 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC-----S-EEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc-----e-EEeeccchhHHHHHHHHhccCceEEE
Confidence 7799877 45799999999986334677777777665544433221 0 112332222111 11235699998
Q ss_pred EcccccCCChhHHHHHHHHHHhccCCCeEEEEE
Q 008457 152 MVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFR 184 (564)
Q Consensus 152 ~~~vl~~~~~~~~~~~l~~~~r~LkpgG~lii~ 184 (564)
-.- . ...+....+.|+|+|+++..
T Consensus 106 D~v-----G----g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 106 DNV-----G----GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp ESS-----C----HHHHHHHHTTEEEEEEEEEC
T ss_pred ecC-----C----chhHHHHhhhccccccEEEe
Confidence 633 2 23678899999999999863
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=82.35 E-value=3 Score=34.34 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=65.6
Q ss_pred HHHHHHhc-CCCCCCCCeEEEeCCcccHHHHHH---HhcCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeec
Q 008457 363 LMAAVLAR-NPTIVAGKKVLELGCGCGGICSMV---AAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 438 (564)
Q Consensus 363 ~l~~~l~~-~~~~~~~~~vLelG~G~G~l~~~~---~~~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w 438 (564)
..|.+.+. ...+.+|.+||=.|+|.| ++.++ +...+.+|++++.+++-.+.+++. +.. .+ ++-
T Consensus 15 lTA~~al~~~~~v~~G~~VlV~ga~gg-vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~------~v--i~~ 81 (182)
T d1v3va2 15 LTAYFGLLEVCGVKGGETVLVSAAAGA-VGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD------AA--FNY 81 (182)
T ss_dssp HHHHHHHHTTTCCCSSCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS------EE--EET
T ss_pred HHHHHHHHHHhCCCCCCEEEEEeCCCc-hhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh------hh--ccc
Confidence 34444443 456678999999898764 55443 344677999999988877777764 221 11 222
Q ss_pred CCCccchhhh-hhcCCCccEEEEeceeeCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 008457 439 GNRDHIEAIK-EENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH 500 (564)
Q Consensus 439 ~~~~~~~~~~-~~~~~~fD~Ii~~d~~y~~~~~~~l~~~~~~ll~~~~g~~~~~~~~~~~~~~ 500 (564)
.+.+..+... ......+|+|+ |++ - .+.++....+| +++| +++++.
T Consensus 82 ~~~~~~~~~~~~~~~~Gvd~v~--D~v----G-~~~~~~~~~~l-~~~G--------~~v~~G 128 (182)
T d1v3va2 82 KTVNSLEEALKKASPDGYDCYF--DNV----G-GEFLNTVLSQM-KDFG--------KIAICG 128 (182)
T ss_dssp TSCSCHHHHHHHHCTTCEEEEE--ESS----C-HHHHHHHGGGE-EEEE--------EEEECC
T ss_pred ccccHHHHHHHHhhcCCCceeE--Eec----C-chhhhhhhhhc-cCCC--------eEEeec
Confidence 2222233322 23455677765 333 2 45678888899 8877 666654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.26 E-value=2 Score=37.89 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=57.3
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh---
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK--- 448 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~--- 448 (564)
.+|+++|=-|++.| ++..++.. .+.+|+++|.+++-++.+.+.+...+ .++.....|..+.+..+.+.
T Consensus 6 LkgK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG-----FQVTGSVCDASLRPEREKLMQTV 79 (259)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CceEEEeccCCCHHHHHHHHHHH
Confidence 48999999999987 77665542 45689999999988887777666543 34667777776554433332
Q ss_pred -hhcCCCccEEEEece
Q 008457 449 -EENNEGFEVILGTDV 463 (564)
Q Consensus 449 -~~~~~~fD~Ii~~d~ 463 (564)
....++.|+++.+--
T Consensus 80 ~~~~~g~idilvnnAG 95 (259)
T d1xq1a_ 80 SSMFGGKLDILINNLG 95 (259)
T ss_dssp HHHHTTCCSEEEEECC
T ss_pred HHHhCCCccccccccc
Confidence 122468999986643
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=81.74 E-value=2.3 Score=37.45 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=56.4
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh---
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK--- 448 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~--- 448 (564)
++|+++|=-|++.| ++..++.. .+.+|+++|.+++-++.+.+.+...+ .++.+...|..+.+..+.+.
T Consensus 6 L~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d2ae2a_ 6 LEGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-----FKVEASVCDLSSRSERQELMNTV 79 (259)
T ss_dssp CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEeeCCCHHHHHHHHHHH
Confidence 47999999999987 77665543 35689999999988887777666543 35566677776655443332
Q ss_pred -hhcCCCccEEEEec
Q 008457 449 -EENNEGFEVILGTD 462 (564)
Q Consensus 449 -~~~~~~fD~Ii~~d 462 (564)
....++.|++|.+-
T Consensus 80 ~~~~~~~idilvnnA 94 (259)
T d2ae2a_ 80 ANHFHGKLNILVNNA 94 (259)
T ss_dssp HHHTTTCCCEEEECC
T ss_pred HHHhCCCceEEEECC
Confidence 12234799998653
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=81.51 E-value=2.4 Score=39.50 Aligned_cols=78 Identities=12% Similarity=0.099 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCCccccHHHHHHhC-------CCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCCCCCc
Q 008457 74 AGRKDVLEVGCGAGNTIFPLIAAY-------PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS 146 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~~~~~l~~~~-------~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 146 (564)
++...|+|+|+|+|.++.-+++.. ...+++.+|.|+.+.+.-++.... ..++... .++. . .+. .
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~-~~~i~w~-~~~~--~----~~~-~ 148 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG-IRNIHWH-DSFE--D----VPE-G 148 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT-CSSEEEE-SSGG--G----SCC-S
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc-cccceec-cChh--h----ccc-C
Confidence 456789999999999998776542 245789999999987776665542 2233322 2221 1 122 2
Q ss_pred eeEEEEcccccCCC
Q 008457 147 IDIVTMVFVLSAVS 160 (564)
Q Consensus 147 fD~V~~~~vl~~~~ 160 (564)
.-+|+++.++..+|
T Consensus 149 ~g~iiaNE~fDAlP 162 (365)
T d1zkda1 149 PAVILANEYFDVLP 162 (365)
T ss_dssp SEEEEEESSGGGSC
T ss_pred CeEEEecccCcccc
Confidence 37899999999887
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=80.37 E-value=1.6 Score=38.57 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=56.9
Q ss_pred CCCCeEEEEcCCccc---cHHHHHHhCCCcEEEEEeCChHHHHHHHhcccccCCCeeEEEecCCcccccCCC------CC
Q 008457 74 AGRKDVLEVGCGAGN---TIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI------SP 144 (564)
Q Consensus 74 ~~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~~iD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~ 144 (564)
.+++.+|--|++.|. .+..|++. |.+|+.+|.+++.++.+.+.....+.++.++.+|+.+.+-...+ .-
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467889988887763 34556666 88999999999999888777666667888899998764310000 12
Q ss_pred CceeEEEEccc
Q 008457 145 SSIDIVTMVFV 155 (564)
Q Consensus 145 ~~fD~V~~~~v 155 (564)
+..|+++.+..
T Consensus 81 g~iDilVnnaG 91 (260)
T d1zema1 81 GKIDFLFNNAG 91 (260)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCeehhhhc
Confidence 57898887654
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=80.25 E-value=3.1 Score=34.59 Aligned_cols=80 Identities=20% Similarity=0.141 Sum_probs=52.2
Q ss_pred CCCCCCCeEEEeCCcccHHHHHHHh---cCCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhh
Q 008457 372 PTIVAGKKVLELGCGCGGICSMVAA---GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK 448 (564)
Q Consensus 372 ~~~~~~~~vLelG~G~G~l~~~~~~---~~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~ 448 (564)
....++++||=.|++.| ++..++. ..+.+|+.++.+++-++.+.+.+..+.. +.+...|-.+....+
T Consensus 18 ~~~l~gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~d~~~~~~~~--- 87 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK------VNVTAAETADDASRA--- 87 (191)
T ss_dssp TSCCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHT------CCCEEEECCSHHHHH---
T ss_pred CCCCCCCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccc------hhhhhhhcccHHHHH---
Confidence 45669999999998876 7655553 3457899999999888888777765432 233444444332222
Q ss_pred hhcCCCccEEEEec
Q 008457 449 EENNEGFEVILGTD 462 (564)
Q Consensus 449 ~~~~~~fD~Ii~~d 462 (564)
.. -+..|+||.+-
T Consensus 88 ~~-~~~iDilin~A 100 (191)
T d1luaa1 88 EA-VKGAHFVFTAG 100 (191)
T ss_dssp HH-TTTCSEEEECC
T ss_pred HH-hcCcCeeeecC
Confidence 22 24789888553
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=80.24 E-value=1.7 Score=38.56 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=55.6
Q ss_pred CCCCeEEEeCCcccHHHHHHHhc---CCCEEEEEcCChhHHHHHHHHHHhcCCCCCCCceEEEEeecCCCccchhhhh--
Q 008457 375 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-- 449 (564)
Q Consensus 375 ~~~~~vLelG~G~G~l~~~~~~~---~~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~i~~~~l~w~~~~~~~~~~~-- 449 (564)
++|+.+|=-|++.| ++..++.. .+.+|+++|.+++.++.+.+.+... +.+.+...|..+.+..+.+..
T Consensus 4 L~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~------~~~~~~~~Dv~~~~~v~~~~~~~ 76 (268)
T d2bgka1 4 LQDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP------DVISFVHCDVTKDEDVRNLVDTT 76 (268)
T ss_dssp TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC------CceEEEEccCCCHHHHHHHHHHH
Confidence 58999999999987 77665542 4568999999988887766665321 456667778776654443321
Q ss_pred -hcCCCccEEEEec
Q 008457 450 -ENNEGFEVILGTD 462 (564)
Q Consensus 450 -~~~~~fD~Ii~~d 462 (564)
-..++.|++|.+-
T Consensus 77 ~~~~g~iD~lVnnA 90 (268)
T d2bgka1 77 IAKHGKLDIMFGNV 90 (268)
T ss_dssp HHHHSCCCEEEECC
T ss_pred HHHcCCcceecccc
Confidence 1235899988553
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=80.20 E-value=1 Score=42.23 Aligned_cols=57 Identities=12% Similarity=0.059 Sum_probs=35.7
Q ss_pred HHHHHHHhcC---CCCCCCCeEEEeCCcccHHHHHHHhc--------CCCEEEEEcCChhHHHHHHHH
Q 008457 362 HLMAAVLARN---PTIVAGKKVLELGCGCGGICSMVAAG--------SADLVVATDGDSIALDLLAQN 418 (564)
Q Consensus 362 ~~l~~~l~~~---~~~~~~~~vLelG~G~G~l~~~~~~~--------~~~~v~~tD~~~~~l~~~~~n 418 (564)
..+|.|+... .......+|||+|+|.|.++.-++.. ...+++.+|.|+.+.+.-+++
T Consensus 62 ~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~ 129 (365)
T d1zkda1 62 ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTL 129 (365)
T ss_dssp HHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHH
Confidence 3456666542 22224568999999999877544332 123689999998655544444
|