Citrus Sinensis ID: 008461

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560----

MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRADKEDKLLDRQRRREKRIKQKMKRKRGGLGDDDDEEDEDNASDKDEESMERGRRKKAKIYFDSDSDNDNDERKQNKDDNGPNIDSISLAEQEALALKLLNSMHS

ccccccccccEEEEcccHHHHHHccccccccccccEEEEEcHHHcccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHccccEEEEEEccccccccccccccEEEEccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHccccEEEEcccccccccccccccEEEEccccccccccEEcccccccccccccEEEEEcHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcHHHHHHccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHccc

cHHHHHcccEEEEEccHHHHHHHHccccccHHHHHHEEHHHHHHHHHccHHHHHHHHHHHccHHccEEEEEccccccHHHHHHHHccccEEEEEccccccccHcHccccEEEEccHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHccccccHHHHHcHHHHHHHHHHHHHHHHcccEEEEHHHHHccccccccccEEEEEcccccHHHHEEEccccccccccccEEEEEccHHHHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHccccccccEEEEcccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccHHcccHHHHHHHccccccEEEEcccccccccHHHccHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccc

mekehvnelnilvctpgrllqhmdetpnfdcsqLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLArlslkdpqylsvheesvtatpnrlQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKklrpgiplmclygrmKQDRRMAIYAQFCEKRSVLFCTDVasrgldfnkaVDWVVQvdcpedvaSYIHRVGrtarynsggrsvlflTPTEMKMLEKLREAkipihftkantkrlqPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIqkdkevfdVTKLSIDEFsaslglpmtpkirflnqkkgkmvpvkpvldnaeKEDKLMISRekllpdnfteenvdrdiletkdiedEGKADLLEDVMRATRVKKNkklkinvhrplgtrlvfdeecntvpplamladtknanvsldqdqKTEYYKKIREELKRADKEDKLLDRQRRREKRIKQKMKrkrgglgddddeedednasdkdeeSMERGRRKKAKiyfdsdsdndnderkqnkddngpnidsISLAEQEALALKLLNSMHS

MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHeesvtatpnrlqQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEafkklrpgiplMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHrvgrtarynsggrsvLFLTPTEMKMLEKLREAKIPIhftkantkrlqpVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEfsaslglpmtpkirflnqkkgkmvpvkpvldnaekeDKLMisrekllpdnfteenvdrdiletkdiedegkadlleDVMRatrvkknkklkinvhrplgtrlvfdEECNTVPPLamladtknanvsldqdqkteyYKKIReelkradkedklldrqrrrekrikqkmkrkrgglgddddeedednasdkdeesmergrrkkakiyfdsdsdndnderkqnkddngpnidSISLAEQEALALKLLNSMHS

MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRADkedklldrqrrrekrikqkmkrkrGGLGddddeedednasdkdeeSMERGRRKKAKIYFDSDSDNDNDERKQNKDDNGPNIDSISlaeqealalkllNSMHS

*******ELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLK**QYLSV*********NRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQ***********************************************************VMRATRVKKNKKLKINVHRPLGTRLVFDEECNTVPPLAMLAD**********************************************************************************************************************************

*E****NELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKA******PVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPK********************************************************************************************************************************************************************************************************************************EALAL*LLN****

MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRADKEDKLLDRQRRREKR*************************************KKAKIYFDSD**************NGPNIDSISLAEQEALALKLLNSMHS

MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQ**********************************************************DVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRADKEDKLLDRQRRREKR********************************************************************ISLAEQEALALKLLNS***

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYxxxxxxxxxxxxxxxxxxxxxRRREKRIKQKMKRKRGGLGDDDDEEDEDNASDKDEESMERGRRKKAKIYFDSDSDNDNDERKQNKDDNGPNIDSISLAEQEALALKLLNSMHS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		564	2.2.26 [Sep-21-2011]
Q9FFT9		739	DEAD-box ATP-dependent RN	yes	no	0.968	0.738	0.587	0.0
Q0D622		773	DEAD-box ATP-dependent RN	yes	no	0.955	0.697	0.495	1e-151
Q9UTP9		735	ATP-dependent RNA helicas	yes	no	0.969	0.744	0.417	1e-113
Q7RZ35		823	ATP-dependent RNA helicas	N/A	no	0.847	0.580	0.425	1e-113
Q1EB31		806	ATP-dependent RNA helicas	N/A	no	0.936	0.655	0.414	1e-112
Q4WM60		787	ATP-dependent RNA helicas	yes	no	0.583	0.418	0.569	1e-112
A1CTZ2		823	ATP-dependent RNA helicas	N/A	no	0.583	0.399	0.566	1e-112
Q0CMM5		804	ATP-dependent RNA helicas	N/A	no	0.583	0.409	0.554	1e-111
Q2UHB7		796	ATP-dependent RNA helicas	yes	no	0.583	0.413	0.557	1e-111
A2QS00		802	ATP-dependent RNA helicas	yes	no	0.583	0.410	0.548	1e-111

>sp\|Q9FFT9\|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana GN=RH32 PE=2 SV=1	Back alignment and function desciption

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/567 (58%), Positives = 436/567 (76%), Gaps = 21/567 (3%)

Query: 1   MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
           +EKE V+E+NILVC PGRLLQHMDETPNF+C QLQILILDEADR+LD  FK  L+ I+SQ
Sbjct: 186 VEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQ 245

Query: 61  LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 120
           LPKHRQT LFSATQTK V+DLARLSL+DP+Y+SVH E+VTATP  L QT MIVP+E+KLD
Sbjct: 246 LPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLD 305

Query: 121 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 180
           MLWSFIK HLNS+ILVFL++ KQVK+V EAF KLRPGIPL  L+G+M Q++RM +Y+QF 
Sbjct: 306 MLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFI 365

Query: 181 EKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
           E++SVLFCTDV +RGLDF+KAVDWVVQVDCPEDVASYIHRVGRTAR+ + G+S+LFLTP+
Sbjct: 366 ERQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPS 425

Query: 241 EMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ 300
           E KM+EKL+EAK+PI   KAN ++LQ VS LLAALLVKYPD+Q  AQ+AFITYLRS+H +
Sbjct: 426 EEKMIEKLQEAKVPIKLIKANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLRSIHKR 485

Query: 301 KDKEVFDVTKLSIDEFSASLGLPMTPKIRFLN---QKKGKM-VPVKPVLDNAEKEDKLMI 356
           +DKE+FDV+KLSI+ FSASLGLPMTP+IRF N   +KKG     +   ++NA++ +  ++
Sbjct: 486 RDKEIFDVSKLSIENFSASLGLPMTPRIRFTNLKTKKKGVYESSIAMEIENAQEYEAPLV 545

Query: 357 SREKLLPDNFTEENVD-RDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGT 415
            ++ LL ++  EE+   +   E K +E   K +  E ++   RV KNKKLKIN+HRP G+
Sbjct: 546 VKKDLLGEDLEEEDFALKPRKEGKVVEKSTKEE--EVLIPGNRVLKNKKLKINLHRPFGS 603

Query: 416 RLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRADKEDKLLDRQRRRE 475
           R+V DEE N++ PLA +A      V+LD+++  +YYKK+  E+++AD EDK +D++RRRE
Sbjct: 604 RVVLDEEGNSLAPLASVAAEAGTEVALDEERMNDYYKKVGAEMRKADIEDKKVDKERRRE 663

Query: 476 KRIKQKMKRKRGGL--GDDDDEEDEDNASDKDEESMERGRRKKAKIYFDSDSDNDNDERK 533
           KR+KQK+KRKRG +   ++++EED D +   D+E+    +R K  +     SDN+ +  K
Sbjct: 664 KRMKQKIKRKRGAMEDEEEEEEEDHDGSGSSDDETGRNSKRAKKIV-----SDNEENGGK 718

Query: 534 QNKDDNGPNIDSISLAEQEALALKLLN 560
                   N DS+S+A+ E +ALK + 
Sbjct: 719 -------INTDSLSVADLEEMALKFIT 738

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp\|Q0D622\|RH32_ORYSJ DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa subsp. japonica GN=Os07g0517000 PE=2 SV=2	Back alignment and function description

>sp\|Q9UTP9\|DBP4_SCHPO ATP-dependent RNA helicase dbp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dbp4 PE=1 SV=1	Back alignment and function description

>sp\|Q7RZ35\|DBP4_NEUCR ATP-dependent RNA helicase dbp-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=dbp-4 PE=3 SV=1	Back alignment and function description

>sp\|Q1EB31\|DBP4_COCIM ATP-dependent RNA helicase DBP4 OS=Coccidioides immitis (strain RS) GN=DBP4 PE=3 SV=1	Back alignment and function description

>sp\|Q4WM60\|DBP4_ASPFU ATP-dependent RNA helicase dbp4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dbp4 PE=3 SV=1	Back alignment and function description

>sp\|A1CTZ2\|DBP4_ASPCL ATP-dependent RNA helicase dbp4 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dbp4 PE=3 SV=1	Back alignment and function description

>sp\|Q0CMM5\|DBP4_ASPTN ATP-dependent RNA helicase dbp4 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp4 PE=3 SV=2	Back alignment and function description

>sp\|Q2UHB7\|DBP4_ASPOR ATP-dependent RNA helicase dbp4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=dbp4 PE=3 SV=1	Back alignment and function description

>sp\|A2QS00\|DBP4_ASPNC ATP-dependent RNA helicase dbp4 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp4 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		564
224126463		766	predicted protein [Populus trichocarpa]	0.989	0.728	0.723	0.0
255563905		753	dead box ATP-dependent RNA helicase, put	0.985	0.738	0.718	0.0
356501519		746	PREDICTED: DEAD-box ATP-dependent RNA he	0.989	0.747	0.690	0.0
356553180		743	PREDICTED: DEAD-box ATP-dependent RNA he	0.984	0.746	0.680	0.0
449515263		734	PREDICTED: DEAD-box ATP-dependent RNA he	0.948	0.728	0.682	0.0
449470439		734	PREDICTED: DEAD-box ATP-dependent RNA he	0.948	0.728	0.681	0.0
225460999		750	PREDICTED: DEAD-box ATP-dependent RNA he	0.991	0.745	0.686	0.0
357494471		747	ATP-dependent RNA helicase DBP4 [Medicag	0.969	0.732	0.653	0.0
297796361		741	hypothetical protein ARALYDRAFT_495573 [	0.966	0.735	0.594	0.0
15240418		739	DEAD-box ATP-dependent RNA helicase 32 [	0.968	0.738	0.587	0.0

>gi\|224126463\|ref\|XP_002319844.1\| predicted protein [Populus trichocarpa] gi\|222858220\|gb\|EEE95767.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/590 (72%), Positives = 490/590 (83%), Gaps = 32/590 (5%)

Query: 1   MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
           MEKEHVN L+ILVCTPGRLLQHMDETPNFDCSQLQ+L+LDEADRILDVGFKK LNAIV+Q
Sbjct: 183 MEKEHVNALSILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIVAQ 242

Query: 61  LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 120
           LPKHRQT LFSATQTKS+QDLARLSLKDP+Y+SVHE++ TATP+RLQQTAMIVPLEQKLD
Sbjct: 243 LPKHRQTLLFSATQTKSIQDLARLSLKDPEYISVHEDAETATPSRLQQTAMIVPLEQKLD 302

Query: 121 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 180
           MLWSF+KAHLNSKILVFL+SCKQVK+VFEAFKKLRPGIPL CL+GRMKQ++RM IY+QFC
Sbjct: 303 MLWSFVKAHLNSKILVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGRMKQEKRMGIYSQFC 362

Query: 181 EKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
           E  SVLF TDVASRGLDFNKAVDWVVQVDCP+DVASYIHRVGRTARY +GGRSVLFL P+
Sbjct: 363 ESHSVLFSTDVASRGLDFNKAVDWVVQVDCPDDVASYIHRVGRTARYLAGGRSVLFLMPS 422

Query: 241 EMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ 300
           EMKMLEKL+ AKIP+ F KANTKRLQPVSGLL+ALLVKYPDMQ  AQ+AFITYLRS+HIQ
Sbjct: 423 EMKMLEKLQTAKIPVQFIKANTKRLQPVSGLLSALLVKYPDMQQLAQRAFITYLRSIHIQ 482

Query: 301 KDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQK-KGKMVPVKPVL---DNAEKEDKLMI 356
           KDKEVFDV KLSI+EFSASLGLPMTPK+RFLNQK KGK    K  L   +++EKED   I
Sbjct: 483 KDKEVFDVLKLSIEEFSASLGLPMTPKVRFLNQKIKGKKAFGKSALLESEDSEKEDAAEI 542

Query: 357 SREKLLPDNF-----------------TEENVDRDILETKDI--EDEGKADLLEDVMRAT 397
             EKL   NF                  EENV++  L+TK+     E K   +ED++ AT
Sbjct: 543 PGEKLDIGNFREESVGRLKENLKIGDSEEENVEKGFLQTKNALNGSEAKTGEIEDLVPAT 602

Query: 398 RVKKNKKLKINVHRPLGTRLVFDEECNTVPPLAMLADTKNANVS--LDQDQKTEYYKKIR 455
           RV K KKLKINVHRP+GTR+VFDEE NT+PPLA +AD KN + S  LDQD++ EYYK +R
Sbjct: 603 RVLKKKKLKINVHRPVGTRVVFDEEGNTLPPLARVADRKNVDNSSLLDQDKREEYYKNMR 662

Query: 456 EELKRADKEDKLLDRQRRREKRIKQKMKRKRGGLGDDDDEEDEDNASDKDEESMERGRR- 514
           E++K  DKEDK+LDRQRRREKRIK+KMKRK G +G ++D E ED+ S  + E    GR+ 
Sbjct: 663 EQMKHVDKEDKVLDRQRRREKRIKEKMKRKIGSMGLEEDGEGEDDLSGSEGE----GRKH 718

Query: 515 KKAKIYFDSDSDNDNDERKQNKDDNGPNIDSISLAEQEALALKLLNSMHS 564
           K++KIYFDSDS  DN E  ++KD+ G + DSISLA+QEALALKLL+SMHS
Sbjct: 719 KRSKIYFDSDS--DNAEMTESKDNAGISTDSISLADQEALALKLLSSMHS 766

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255563905\|ref\|XP_002522952.1\| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi\|223537764\|gb\|EEF39382.1\| dead box ATP-dependent RNA helicase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356501519\|ref\|XP_003519572.1\| PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like [Glycine max]	Back alignment and taxonomy information

>gi\|356553180\|ref\|XP_003544936.1\| PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like [Glycine max]	Back alignment and taxonomy information

>gi\|449515263\|ref\|XP_004164669.1\| PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449470439\|ref\|XP_004152924.1\| PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225460999\|ref\|XP_002278373.1\| PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357494471\|ref\|XP_003617524.1\| ATP-dependent RNA helicase DBP4 [Medicago truncatula] gi\|355518859\|gb\|AET00483.1\| ATP-dependent RNA helicase DBP4 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297796361\|ref\|XP_002866065.1\| hypothetical protein ARALYDRAFT_495573 [Arabidopsis lyrata subsp. lyrata] gi\|297311900\|gb\|EFH42324.1\| hypothetical protein ARALYDRAFT_495573 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15240418\|ref\|NP_200302.1\| DEAD-box ATP-dependent RNA helicase 32 [Arabidopsis thaliana] gi\|75333773\|sp\|Q9FFT9.1\|RH32_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 32 gi\|9758271\|dbj\|BAB08770.1\| RNA helicase-like protein [Arabidopsis thaliana] gi\|332009172\|gb\|AED96555.1\| DEAD-box ATP-dependent RNA helicase 32 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		564
TAIR\|locus:2160225		739	AT5G54910 [Arabidopsis thalian	0.815	0.622	0.631	4e-154
POMBASE\|SPAC1093.05		735	SPAC1093.05 "ATP-dependent RNA	0.581	0.446	0.557	1.7e-103
DICTYBASE\|DDB_G0284017		878	ddx10 "DEAD/DEAH box helicase"	0.723	0.464	0.467	2.1e-103
ASPGD\|ASPL0000061778		812	AN0589 [Emericella nidulans (t	0.583	0.405	0.539	8.4e-102
UNIPROTKB\|E9PIF2		835	DDX10 "Probable ATP-dependent	0.643	0.434	0.509	3.6e-101
UNIPROTKB\|Q13206		875	DDX10 "Probable ATP-dependent	0.643	0.414	0.509	3.6e-101
UNIPROTKB\|F1P0I3		875	DDX10 "Probable ATP-dependent	0.618	0.398	0.515	1.6e-100
UNIPROTKB\|Q5ZJF6		875	DDX10 "Probable ATP-dependent	0.618	0.398	0.515	1.6e-100
MGI\|MGI:1924841		875	Ddx10 "DEAD (Asp-Glu-Ala-Asp)	0.645	0.416	0.514	3.7e-99
RGD\|1308990		874	Ddx10 "DEAD (Asp-Glu-Ala-Asp)	0.615	0.397	0.536	2e-98

TAIR\|locus:2160225 AT5G54910 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1503 (534.1 bits), Expect = 4.0e-154, P = 4.0e-154
 Identities = 295/467 (63%), Positives = 375/467 (80%)

Query:     1 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQ 60
             +EKE V+E+NILVC PGRLLQHMDETPNF+C QLQILILDEADR+LD  FK  L+ I+SQ
Sbjct:   186 VEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQ 245

Query:    61 LPKHRQTFLFSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLD 120
             LPKHRQT LFSATQTK V+DLARLSL+DP+Y+SVH E+VTATP  L QT MIVP+E+KLD
Sbjct:   246 LPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLD 305

Query:   121 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC 180
             MLWSFIK HLNS+ILVFL++ KQVK+V EAF KLRPGIPL  L+G+M Q++RM +Y+QF 
Sbjct:   306 MLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFI 365

Query:   181 EKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 240
             E++SVLFCTDV +RGLDF+KAVDWVVQVDCPEDVASYIHRVGRTAR+ + G+S+LFLTP+
Sbjct:   366 ERQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPS 425

Query:   241 EMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ 300
             E KM+EKL+EAK+PI   KAN ++LQ VS LLAALLVKYPD+Q  AQ+AFITYLRS+H +
Sbjct:   426 EEKMIEKLQEAKVPIKLIKANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLRSIHKR 485

Query:   301 KDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQK-KGKMVPVKPV---LDNAEKEDKLMI 356
             +DKE+FDV+KLSI+ FSASLGLPMTP+IRF N K K K V    +   ++NA++ +  ++
Sbjct:   486 RDKEIFDVSKLSIENFSASLGLPMTPRIRFTNLKTKKKGVYESSIAMEIENAQEYEAPLV 545

Query:   357 SREKLLPDNFTEENVD-RDILETKDIEDEGKADLLEDVMRATRVKKNKKLKINVHRPLGT 415
              ++ LL ++  EE+   +   E K +E   K +  E ++   RV KNKKLKIN+HRP G+
Sbjct:   546 VKKDLLGEDLEEEDFALKPRKEGKVVEKSTKEE--EVLIPGNRVLKNKKLKINLHRPFGS 603

Query:   416 RLVFDEECNTVPPLAMLADTKNANVSLDQDQKTEYYKKIREELKRAD 462
             R+V DEE N++ PLA +A      V+LD+++  +YYKK+  E+++AD
Sbjct:   604 RVVLDEEGNSLAPLASVAAEAGTEVALDEERMNDYYKKVGAEMRKAD 650

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

POMBASE\|SPAC1093.05 SPAC1093.05 "ATP-dependent RNA helicase Hca4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0284017 ddx10 "DEAD/DEAH box helicase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000061778 AN0589 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PIF2 DDX10 "Probable ATP-dependent RNA helicase DDX10" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13206 DDX10 "Probable ATP-dependent RNA helicase DDX10" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P0I3 DDX10 "Probable ATP-dependent RNA helicase DDX10" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZJF6 DDX10 "Probable ATP-dependent RNA helicase DDX10" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1924841 Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1308990 Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFT9	RH32_ARATH	3, ., 6, ., 4, ., 1, 3	0.5873	0.9680	0.7388	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.13	0.914
3rd Layer	3.6.4	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00130918	hypothetical protein (766 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.4832.1	hypothetical protein (422 aa)	•		•	0.490
	eugene3.00160311	hypothetical protein (691 aa)	•	•		0.472
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)	•	•	•	0.469
	eugene3.00640202	hypothetical protein (1181 aa)	•		•	0.438
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)	•			0.438
	estExt_fgenesh4_pm.C_280108	hypothetical protein (960 aa)	•			0.412
	gw1.86.17.1	hypothetical protein (573 aa)	•			0.409
	eugene3.00090493	hypothetical protein (840 aa)	•			0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		564
COG0513		513	COG0513, SrmB, Superfamily II DNA and RNA helicase	8e-65
PRK11776		460	PRK11776, PRK11776, ATP-dependent RNA helicase Dbp	4e-44
PTZ00110		545	PTZ00110, PTZ00110, helicase; Provisional	4e-39
PRK11192		434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	7e-35
cd00268		203	cd00268, DEADc, DEAD-box helicases	1e-31
PRK01297		475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	2e-31
PRK11634		629	PRK11634, PRK11634, ATP-dependent RNA helicase Dea	5e-31
PRK04537		572	PRK04537, PRK04537, ATP-dependent RNA helicase Rhl	3e-28
PRK10590		456	PRK10590, PRK10590, ATP-dependent RNA helicase Rhl	3e-26
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	3e-24
PRK04837		423	PRK04837, PRK04837, ATP-dependent RNA helicase Rhl	1e-22
PTZ00424		401	PTZ00424, PTZ00424, helicase 45; Provisional	3e-22
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	1e-19
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	3e-19
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	7e-18
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	8e-18
PLN00206		518	PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel	3e-16
pfam13959		64	pfam13959, DUF4217, Domain of unknown function (DU	7e-16
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	2e-14
TIGR01389		591	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	6e-06
cd09639		353	cd09639, Cas3_I, CRISPR/Cas system-associated prot	9e-06
COG1111		542	COG1111, MPH1, ERCC4-like helicases [DNA replicati	9e-05
pfam09805		134	pfam09805, Nop25, Nucleolar protein 12 (25kDa)	0.003

>gnl\|CDD\|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

 Score =  220 bits (561), Expect = 8e-65
 Identities = 101/367 (27%), Positives = 161/367 (43%), Gaps = 18/367 (4%)

Query: 10  NILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFL 69
           +I+V TPGRLL  +      D S ++ L+LDEADR+LD+GF   +  I+  LP  RQT L
Sbjct: 152 DIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLL 210

Query: 70  FSATQTKSVQDLARLSLKDPQYLSVHEESVTATPNRLQQTAMIVP-LEQKLDMLWSFIKA 128
           FSAT    +++LAR  L DP  + V  E +  T  +++Q  + V   E+KL++L   +K 
Sbjct: 211 FSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKD 270

Query: 129 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKR-SVLF 187
               +++VF+ + + V+ + E+ +K   G  +  L+G + Q+ R     +F +    VL 
Sbjct: 271 EDEGRVIVFVRTKRLVEELAESLRKR--GFKVAALHGDLPQEERDRALEKFKDGELRVLV 328

Query: 188 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP-TEMKMLE 246
            TDVA+RGLD    V  V+  D P D   Y+HR+GRT R    G ++ F+T   E+K L+
Sbjct: 329 ATDVAARGLDI-PDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLK 387

Query: 247 KLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVF 306
           ++ +            ++L     L          ++            S  I+K K   
Sbjct: 388 RIEKRLE---------RKLPSAVLLPLDEPEDAKLLKTTRPGLEEESDISDEIKKLKSSK 438

Query: 307 DVTKLSIDEFSASLGLPMTPKIRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNF 366
                 +        L             G  V + P L+         I          
Sbjct: 439 KALLRGLGVRFTLSKLLANLGKE--IPGAGDAVTIDPELERRSPNSADDIEYILKGLSYR 496

Query: 367 TEENVDR 373
            EE   +
Sbjct: 497 AEERTAK 503

Length = 513

>gnl\|CDD\|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>gnl\|CDD\|240273 PTZ00110, PTZ00110, helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>gnl\|CDD\|238167 cd00268, DEADc, DEAD-box helicases	Back alignment and domain information

>gnl\|CDD\|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>gnl\|CDD\|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>gnl\|CDD\|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>gnl\|CDD\|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>gnl\|CDD\|185609 PTZ00424, PTZ00424, helicase 45; Provisional	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|222474 pfam13959, DUF4217, Domain of unknown function (DUF4217)	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ	Back alignment and domain information

>gnl\|CDD\|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	Back alignment and domain information

>gnl\|CDD\|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		564
KOG0343		758	consensus RNA Helicase [RNA processing and modific	100.0
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	100.0
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	100.0
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	100.0
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	100.0
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	100.0
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	100.0
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	100.0
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	100.0
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	100.0
PTZ00110		545	helicase; Provisional	100.0
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	100.0
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	100.0
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	100.0
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	100.0
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	100.0
KOG0346		569	consensus RNA helicase [RNA processing and modific	100.0
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	100.0
KOG0347		731	consensus RNA helicase [RNA processing and modific	100.0
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0327		397	consensus Translation initiation factor 4F, helica	100.0
PTZ00424		401	helicase 45; Provisional	100.0
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	100.0
KOG4284		980	consensus DEAD box protein [Transcription]	100.0
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0334		997	consensus RNA helicase [RNA processing and modific	100.0
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	100.0
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	100.0
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	100.0
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	100.0
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	100.0
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.98
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.97
PRK13767		876	ATP-dependent helicase; Provisional	99.96
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.96
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.96
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.96
PHA02653		675	RNA helicase NPH-II; Provisional	99.96
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.96
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.96
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.96
PRK10689		1147	transcription-repair coupling factor; Provisional	99.96
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	99.95
PRK02362		737	ski2-like helicase; Provisional	99.95
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.95
PRK00254		720	ski2-like helicase; Provisional	99.95
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	99.95
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.94
PRK01172		674	ski2-like helicase; Provisional	99.94
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	99.93
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.93
PRK09401		1176	reverse gyrase; Reviewed	99.93
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.92
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.91
PHA02558		501	uvsW UvsW helicase; Provisional	99.91
PRK14701		1638	reverse gyrase; Provisional	99.91
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.91
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.9
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.89
PRK04914		956	ATP-dependent helicase HepA; Validated	99.89
PRK13766		773	Hef nuclease; Provisional	99.89
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.89
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.89
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.88
COG1202		830	Superfamily II helicase, archaea-specific [General	99.88
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	99.87
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.87
COG1204		766	Superfamily II helicase [General function predicti	99.86
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.85
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.83
PRK05580		679	primosome assembly protein PriA; Validated	99.82
PRK09694		878	helicase Cas3; Provisional	99.81
KOG0354		746	consensus DEAD-box like helicase [General function	99.81
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.8
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.8
COG1205		851	Distinct helicase family with a unique C-terminal	99.79
PRK05298		652	excinuclease ABC subunit B; Provisional	99.78
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	99.78
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.76
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.76
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.75
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	99.74
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.74
KOG0353		695	consensus ATP-dependent DNA helicase [General func	99.73
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	99.71
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.71
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.71
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.69
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.68
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	99.68
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	99.67
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.67
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.66
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	99.66
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.66
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.66
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.64
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	99.6
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	99.57
PF13959		65	DUF4217: Domain of unknown function (DUF4217)	99.54
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.51
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.5
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	99.5
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	99.46
COG1198		730	PriA Primosomal protein N' (replication factor Y)	99.4
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.4
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	99.38
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	99.36
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	99.27
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	99.19
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	99.18
COG4096		875	HsdR Type I site-specific restriction-modification	99.18
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	99.14
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	99.13
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.11
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	99.07
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	99.03
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.0
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	98.98
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	98.94
PRK12326		764	preprotein translocase subunit SecA; Reviewed	98.93
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	98.89
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	98.86
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	98.84
KOG1123		776	consensus RNA polymerase II transcription initiati	98.81
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.8
KOG0387		923	consensus Transcription-coupled repair protein CSB	98.8
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	98.73
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	98.71
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	98.58
CHL00122		870	secA preprotein translocase subunit SecA; Validate	98.55
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	98.49
PRK14873		665	primosome assembly protein PriA; Provisional	98.48
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	98.38
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	98.35
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	98.31
KOG2340		698	consensus Uncharacterized conserved protein [Funct	98.28
smart00487		201	DEXDc DEAD-like helicases superfamily.	98.26
COG4889		1518	Predicted helicase [General function prediction on	98.15
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.08
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.06
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	97.99
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	97.96
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	97.88
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	97.83
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	97.81
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	97.79
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	97.79
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	97.71
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	97.7
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	97.67
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	97.63
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	97.57
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	97.41
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	97.4
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	97.1
KOG1002		791	consensus Nucleotide excision repair protein RAD16	96.76
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	96.42
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	96.19
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	95.94
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	95.83
COG0610		962	Type I site-specific restriction-modification syst	95.26
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	95.17
KOG4439		901	consensus RNA polymerase II transcription terminat	95.14
PF14617		252	CMS1: U3-containing 90S pre-ribosomal complex subu	94.78
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	94.42
PF13871		278	Helicase_C_4: Helicase_C-like	94.04
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	93.99
PRK05580		679	primosome assembly protein PriA; Validated	92.7
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	92.62
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	92.17
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	92.04
TIGR00595		505	priA primosomal protein N'. All proteins in this f	91.87
PRK14873		665	primosome assembly protein PriA; Provisional	91.26
KOG0701		1606	consensus dsRNA-specific nuclease Dicer and relate	91.08
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	90.94
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	90.92
PRK10689		1147	transcription-repair coupling factor; Provisional	90.58
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	89.51
PRK13107		908	preprotein translocase subunit SecA; Reviewed	89.45
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	88.88
KOG1133		821	consensus Helicase of the DEAD superfamily [Replic	88.05
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	87.65
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	87.46
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	87.26
PF10593		239	Z1: Z1 domain; InterPro: IPR018310 This entry repr	86.34
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	85.13
COG1198		730	PriA Primosomal protein N' (replication factor Y)	84.58
KOG3089		271	consensus Predicted DEAD-box-containing helicase [	82.91
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	82.65
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	82.62
KOG0343		758	consensus RNA Helicase [RNA processing and modific	82.46
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	82.4
PRK14701		1638	reverse gyrase; Provisional	81.81
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	81.48
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	81.48
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	80.85
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	80.65

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=2e-111  Score=883.09  Aligned_cols=538  Identities=50%  Similarity=0.784  Sum_probs=457.0

Q ss_pred             CcccccCCCcEEEEcHHHHHHHHhcCCCCCCCCcceEEEeccCccCcccHHHHHHHHHHhCCCCCcEEEEeccCChhHHH
Q 008461            1 MEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQILILDEADRILDVGFKKALNAIVSQLPKHRQTFLFSATQTKSVQD   80 (564)
Q Consensus         1 ~Ek~r~~~~~ILV~TPgrLl~~L~~~~~~~~~~L~~lVlDEAD~lld~gf~~~l~~Il~~lp~~~Q~llfSATl~~~v~~   80 (564)
                      +|+.|++++||||||||||||||++++.|++++|+||||||||||+||||..+|+.|++++|+.+||+|||||++.++.+
T Consensus       183 ~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkd  262 (758)
T KOG0343|consen  183 FELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKD  262 (758)
T ss_pred             HHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcccccccccccCCccceeEEEEcCcccHHHHHHHHHHHcCCCcEEEEeCChHHHHHHHHHHHhhCCCCCe
Q 008461           81 LARLSLKDPQYLSVHEESVTATPNRLQQTAMIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPL  160 (564)
Q Consensus        81 l~~~~l~~p~~i~v~~~~~~~~p~~l~q~~~~~~~~~Kl~~L~~~L~~~~~~k~IVF~~t~k~v~~l~e~L~~l~~gi~v  160 (564)
                      ++++++.+|.||+++......+|.+|+|+|++++...|+++||+||++|...++|||++||++|.|+|+.|++++||+++
T Consensus       263 LaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l  342 (758)
T KOG0343|consen  263 LARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPL  342 (758)
T ss_pred             HHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCce
Confidence            99999999999999988888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCCHHHHHHHHHHHhc-cCCeEEEecccccCCCcCCCCcEEEEcCCCCCHhhHHHHhcccccCCCCceEEEEeCc
Q 008461          161 MCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP  239 (564)
Q Consensus       161 ~~lHg~m~~~~R~~i~~~F~~-~~~VLVaTdv~arGLD~pp~V~~VI~~d~P~s~~~YiqRiGRtgR~g~~G~~il~l~~  239 (564)
                      ++|||+|+|..|..++.+|-. ...||||||+++||||| |+|+||||||||.++++||||+|||+|++..|.++++++|
T Consensus       343 ~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF-paVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~p  421 (758)
T KOG0343|consen  343 LALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF-PAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTP  421 (758)
T ss_pred             eeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC-cccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcc
Confidence            999999999999999999999 99999999999999999 8999999999999999999999999999999999999999


Q ss_pred             chHH-HHHHHHHcCCCccccccccccchhHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHH
Q 008461          240 TEMK-MLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSA  318 (564)
Q Consensus       240 ~e~~-~l~~L~~~~i~i~~~~~~~~~~~~i~~~l~~~~~~~~~l~~~a~~af~sy~rs~~~~~~k~if~~~~l~l~~~A~  318 (564)
                      ++.+ |+..|+.++||+..+.+++.++.++..+++++|+++|+|++.||+||+||+||+|.++++.+|++..+++.+||.
T Consensus       422 sEeE~~l~~Lq~k~I~i~~i~i~~~k~~~i~~~l~~ll~~~~eLk~~aqka~isY~rsi~~~rdK~~f~~~~l~~~afa~  501 (758)
T KOG0343|consen  422 SEEEAMLKKLQKKKIPIKEIKIDPEKLTSIRNKLEALLAKDPELKEYAQKAFISYLRSIYLMRDKRVFDVEKLDIEAFAD  501 (758)
T ss_pred             hhHHHHHHHHHHcCCCHHhhccCHHHhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhhccchhhcchhccHHHHHH
Confidence            9955 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCc-ccccccccCCCCCCCCcccchhhhhhhhccccccCCCCCCCCCCCCCcceecccccccc-----ccc-h-
Q 008461          319 SLGLPMTPK-IRFLNQKKGKMVPVKPVLDNAEKEDKLMISREKLLPDNFTEENVDRDILETKDIEDEGK-----ADL-L-  390 (564)
Q Consensus       319 s~GL~~~P~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~-  390 (564)
                      ||||+++|+ ++|+++..++++ ++++.+.             .-.+++++..+++|||+|||+|...+     +++ . 
T Consensus       502 s~Gl~~~p~~~~~l~~~~k~~~-~~~l~e~-------------~~~~eeee~~~~ed~f~vK~~dvlge~~~l~ee~~~e  567 (758)
T KOG0343|consen  502 SLGLPGTPRIVRFLNKKAKKQG-IEQLMEQ-------------SVDEEEEEATDDEDFFKVKKHDVLGEPEQLKEEDAAE  567 (758)
T ss_pred             hcCCCCCchhccchhhHHHhcC-hHhhhhh-------------hccchhhhccchhhhhheeccccccchhhhhhhhhhh
Confidence            999999999 999987666655 4444111             00000111113445555555333221     000 0 


Q ss_pred             ----hhh-------hhhhhhhhcccccccccCCCCceEEecCCCCCCCcchhhhhhh---ccCCCcchhHHHHHHHHHHH
Q 008461          391 ----EDV-------MRATRVKKNKKLKINVHRPLGTRLVFDEECNTVPPLAMLADTK---NANVSLDQDQKTEYYKKIRE  456 (564)
Q Consensus       391 ----~~~-------~~~~~~~~~k~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  456 (564)
                          ..+       .+..|.+..||+++ +..++|+|++|||||++++.|. +..+.   ..|+  +.+....|+.++++
T Consensus       568 k~d~~~~svkk~~k~~~tKva~aKKa~~-k~~kvnsK~~FddEGe~~~~~~-~~~e~~~~~~~~--d~~~~g~~l~k~~a  643 (758)
T KOG0343|consen  568 KEDNDFISVKKKDKKRVTKVALAKKALK-KNLKVNSKLTFDDEGELAPEYE-QMPETITSKAGD--DDDTGGINLEKAKA  643 (758)
T ss_pred             cccCCCceeccchhhhHHHHHHHHHHHH-HhhccCceeeecCccccchhhh-hchhhhhhhccC--chhhccchHHHHHH
Confidence                000       12345666666665 5556799999999999999994 44333   3355  66777788999999


Q ss_pred             HHHHhcHHhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-----ccccc----CCCCccchhhhccCCcccccccCCCCCC
Q 008461          457 ELKRADKEDKLLDRQRRREKRIKQKMKRKRGGLGDDDD-----EEDED----NASDKDEESMERGRRKKAKIYFDSDSDN  527 (564)
Q Consensus       457 ~~~~~d~~dk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~  527 (564)
                      +|+++|++||+++|+++++||+++++++|+.++++.++     +.+++    .||++  ++|++|+|+|+|++....+++
T Consensus       644 ~l~~~D~~DK~~~kek~~ek~r~k~~k~rr~aeea~~~e~e~~e~d~~~~~~~gs~d--D~d~s~lPd~dk~~kk~~~d~  721 (758)
T KOG0343|consen  644 ELKEEDKEDKKRFKEKRKEKRREKLEKERRRAEEANEEEAEAEEEDGDFVDWSGSED--DPDISWLPDPDKVRKKKESDS  721 (758)
T ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhccCchhcccCCcc--cCCcccCCChhhhhhccccCc
Confidence            99999999999999999999999999998876543111     11221    24444  499999999998887666555


Q ss_pred             chhhhhcC----CCCCCCCCCCCCHHHHHHHHHHhHh
Q 008461          528 DNDERKQN----KDDNGPNIDSISLAEQEALALKLLN  560 (564)
Q Consensus       528 ~~~~~~~~----~~~~~~~~~~~~~~~~e~~~~~ll~  560 (564)
                      ++.+.+..    ...+..+ .+.+++|+|++|+++..
T Consensus       722 de~e~k~~s~~~~~g~k~~-~~~~~eD~e~~~~k~~~  757 (758)
T KOG0343|consen  722 DENEGKIQSALAADGIKEV-SNSSVEDVEPLALKLKK  757 (758)
T ss_pred             hhhcccccccccccccccc-CCcchhhcchhhHHhhc
Confidence            55432221    1233334 78999999999999865

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF13959 DUF4217: Domain of unknown function (DUF4217)	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG2340 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		564
2pl3_A		236	Human Dead-Box Rna Helicase Ddx10, Dead Domain In C		1e-35
3sqw_A		579	Structure Of Mss116p (Nte Deletion) Bound To Ssrna		3e-28
3i5x_A		563	Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len		5e-28
3sqx_A		512	Structure Of Mss116p (Nte And C-Tail Double Deletio		7e-28
3ly5_A		262	Ddx18 Dead-Domain Length = 262		3e-24
2i4i_A		417	Crystal Structure Of Human Dead-Box Rna Helicase Dd		2e-22
1hv8_A		367	Crystal Structure Of A Dead Box Protein From The Hy		3e-22
1s2m_A		400	Crystal Structure Of The Dead Box Protein Dhh1p Len		3e-22
2db3_A		434	Structural Basis For Rna Unwinding By The Dead-Box		2e-20
1xtk_A		390	Structure Of Decd To Dead Mutation Of Human Uap56 L		4e-20
1xti_A		391	Structure Of Wildtype Human Uap56 Length = 391		2e-19
1xtj_A		386	Structure Of Human Uap56 In Complex With Adp Length		2e-19
2j0u_B		374	The Crystal Structure Of Eif4aiii-Barentsz Complex		4e-19
2hyi_C		413	Structure Of The Human Exon Junction Complex With A		7e-19
2j0q_A		410	The Crystal Structure Of The Exon Junction Complex		7e-19
2xb2_A		411	Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar		8e-19
2j0u_A		374	The Crystal Structure Of Eif4aiii-Barentsz Complex		9e-19
2hxy_A		391	Crystal Structure Of Human Apo-Eif4aiii Length = 39		9e-19
2z0m_A		337	Crystal Structure Of Hypothetical Atp-Dependent Rna		5e-17
4db4_A		256	Mss116p Dead-Box Helicase Domain 2 Bound To A Chima		6e-17
4db2_C		257	Mss116p Dead-Box Helicase Domain 2 Bound To An Rna		6e-17
4db2_A		257	Mss116p Dead-Box Helicase Domain 2 Bound To An Rna		6e-17
3ber_A		249	Human Dead-Box Rna-Helicase Ddx47, Conserved Domain		8e-17
3fmp_B		479	Crystal Structure Of The Nucleoporin Nup214 In Comp		9e-17
3g0h_A		424	Human Dead-box Rna Helicase Ddx19, In Complex With		1e-16
3fht_A		412	Crystal Structure Of Human Dbp5 In Complex With Amp		1e-16
3ews_A		445	Human Dead-Box Rna-Helicase Ddx19 In Complex With A		1e-16
3pew_A		395	S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3		3e-15
3pey_A		395	S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length		5e-15
3eiq_A		414	Crystal Structure Of Pdcd4-eif4a Length = 414		1e-14
2zu6_A		388	Crystal Structure Of The Eif4a-Pdcd4 Complex Length		3e-14
3fho_B		508	Structure Of S. Pombe Dbp5 Length = 508		3e-14
2vso_A		395	Crystal Structure Of A Translation Initiation Compl		2e-13
1fuu_A		394	Yeast Initiation Factor 4a Length = 394		3e-12
3mwj_A		207	Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap		1e-10
2gxq_A		207	Hera N-Terminal Domain In Complex With Amp, Crystal		1e-10
2hjv_A		163	Structure Of The Second Domain (Residues 207-368) O		5e-10
2p6n_A		191	Human Dead-box Rna Helicase Ddx41, Helicase Domain		6e-10
4a4d_A		253	Crystal Structure Of The N-Terminal Domain Of The H		9e-10
3fe2_A		242	Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D		1e-09
2wax_A		193	Structure Of The Human Ddx6 C-Terminal Domain In Co		3e-09
1t5i_A		172	Crystal Structure Of The C-Terminal Domain Of Uap56		2e-08
2jgn_A		185	Ddx3 Helicase Domain Length = 185		2e-08
1wrb_A		253	Crystal Structure Of The N-Terminal Reca-Like Domai		1e-07
3peu_A		188	S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To		1e-07
3gfp_A		189	Structure Of The C-Terminal Domain Of The Dead-Box		2e-07
2kbf_A		187	Solution Structure Of Carboxyl-Terminal Domain Of D		2e-07
3i32_A		300	Dimeric Structure Of A Hera Helicase Fragment Inclu		4e-07
3eaq_A		212	Novel Dimerization Motif In The Dead Box Rna Helica		4e-07
1qde_A		224	Crystal Structure Of The Atpase Domain Of Translati		4e-07
1vec_A		206	Crystal Structure Of The N-Terminal Domain Of RckP5		5e-07
2yjt_D		170	Crystal Structure Of E. Coli Dead-Box Protein Srmb		7e-07
1qva_A		223	Yeast Initiation Factor 4a N-Terminal Domain Length		2e-06
3iuy_A		228	Crystal Structure Of Ddx53 Dead-Box Domain Length =		2e-06
1q0u_A		219	Crystal Structure Of The Bstdead N-Terminal Domain		3e-06
2rb4_A		175	Crystal Structure Of The Helicase Domain Of Human D		6e-06
2oxc_A		230	Human Dead-Box Rna Helicase Ddx20, Dead Domain In C		2e-05
3bor_A		237	Crystal Structure Of The Deadc Domain Of Human Tran		2e-05
1t6n_A		220	Crystal Structure Of The N-Terminal Domain Of Human		7e-05
2g9n_A		221	Structure Of The Dead Domain Of Human Eukaryotic In		5e-04
3fmo_B		300	Crystal Structure Of The Nucleoporin Nup214 In Comp		5e-04
3fhc_B		235	Crystal Structure Of Human Dbp5 In Complex With Nup		6e-04

>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236