Citrus Sinensis ID: 008466
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 564 | 2.2.26 [Sep-21-2011] | |||||||
| Q93ZR1 | 565 | Elongator complex protein | yes | no | 0.998 | 0.996 | 0.920 | 0.0 | |
| Q7X7L3 | 573 | Elongator complex protein | yes | no | 0.985 | 0.970 | 0.919 | 0.0 | |
| Q5ZHS1 | 546 | Elongator complex protein | yes | no | 0.966 | 0.998 | 0.741 | 0.0 | |
| Q5RIC0 | 548 | Elongator complex protein | yes | no | 0.953 | 0.981 | 0.741 | 0.0 | |
| Q5HZM6 | 549 | Elongator complex protein | N/A | no | 0.971 | 0.998 | 0.721 | 0.0 | |
| Q9VQZ6 | 552 | Probable elongator comple | yes | no | 0.957 | 0.978 | 0.735 | 0.0 | |
| Q6NVL5 | 549 | Elongator complex protein | yes | no | 0.953 | 0.979 | 0.737 | 0.0 | |
| Q1ZXC6 | 559 | Probable elongator comple | yes | no | 0.939 | 0.948 | 0.735 | 0.0 | |
| Q9H9T3 | 547 | Elongator complex protein | yes | no | 0.955 | 0.985 | 0.730 | 0.0 | |
| Q2KJ61 | 547 | Elongator complex protein | yes | no | 0.955 | 0.985 | 0.729 | 0.0 |
| >sp|Q93ZR1|ELP3_ARATH Elongator complex protein 3 OS=Arabidopsis thaliana GN=HAG3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1084 bits (2803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/564 (92%), Positives = 544/564 (96%), Gaps = 1/564 (0%)
Query: 1 MATAVLPQ-DAKKLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIK 59
MATAV+ + KK PRPG+GG+Q GLTEEEARVRAI+EIV++M+E S +NE VDLNAIK
Sbjct: 1 MATAVVMNGELKKQPRPGKGGYQGRGLTEEEARVRAISEIVSTMIERSHRNENVDLNAIK 60
Query: 60 SAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHI 119
+AACRKYGLARAPKLVEMIAALP+++RE LLPKLRAKPVRTASGIAVVAVMSKPHRCPHI
Sbjct: 61 TAACRKYGLARAPKLVEMIAALPDSERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHI 120
Query: 120 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV 179
ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV
Sbjct: 121 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV 180
Query: 180 DKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239
DKVEFILMGGTFMSLPA+YRD+FIRNLHDALSGHTSANVEEAV YSEH ATKCIGMTIET
Sbjct: 181 DKVEFILMGGTFMSLPAEYRDFFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIET 240
Query: 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV 299
RPDYCLGPHLRQML YGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV
Sbjct: 241 RPDYCLGPHLRQMLIYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV 300
Query: 300 AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPP 359
AHMMPDLPNVGVERD+ESF+EFFESP FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPP
Sbjct: 301 AHMMPDLPNVGVERDMESFKEFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPP 360
Query: 360 EQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419
EQLVDIVARIL+MVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR
Sbjct: 361 EQLVDIVARILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 420
Query: 420 TREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTC 479
TREAGIQDIHH+IKPE+VELVRRDY ANEGWETFLSYEDTRQDILVGLLRLRKCG+NVTC
Sbjct: 421 TREAGIQDIHHKIKPEQVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGKNVTC 480
Query: 480 PELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS 539
PELMGKCS+VRELHVYGTAVPVHGR+ADKLQHQGYGTLLMEEAERIA EHRS K+ VIS
Sbjct: 481 PELMGKCSVVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARREHRSNKIGVIS 540
Query: 540 GVGTRHYYRKLGYELEGPYMVKYL 563
GVGTRHYYRKLGYELEGPYMVK+L
Sbjct: 541 GVGTRHYYRKLGYELEGPYMVKHL 564
|
Histone acetyltransferase component of the large multiprotein complex Elongator that is involved in the regulation of transcription initiation and elongation. May also have a methyltransferase activity. Promotes organs development by modulating cell division rate. Required for auxin distribution or signaling. Involved in tRNA wobble uridine modification. Mediates the establishment of leaf polarity independently of AS2 and the ta-siRNA-related pathway. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 8 |
| >sp|Q7X7L3|ELP3_ORYSJ Elongator complex protein 3 OS=Oryza sativa subsp. japonica GN=ELP3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/557 (91%), Positives = 535/557 (96%), Gaps = 1/557 (0%)
Query: 8 QDAKKLPRPGRGGF-QAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKSAACRKY 66
Q ++ P PGRGG GL+EEEARVRAIAEIV++M ELSR+ E VDLNA+KSAACR+Y
Sbjct: 16 QPRRRKPAPGRGGVVLPAGLSEEEARVRAIAEIVSAMGELSRRGEDVDLNALKSAACRRY 75
Query: 67 GLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNIC 126
GLARAPKLVEMIAA+PE DR ALLP+LRAKPVRTASGIAVVAVMSKPHRCPHIATTGNIC
Sbjct: 76 GLARAPKLVEMIAAVPEADRAALLPRLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNIC 135
Query: 127 VYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFIL 186
VYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFIL
Sbjct: 136 VYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFIL 195
Query: 187 MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLG 246
MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV YSEHGA KCIGMTIETRPDYCLG
Sbjct: 196 MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVCYSEHGAVKCIGMTIETRPDYCLG 255
Query: 247 PHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDL 306
PHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDL
Sbjct: 256 PHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDL 315
Query: 307 PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366
PNVGVERDLESFREFFE+P FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE LVDIV
Sbjct: 316 PNVGVERDLESFREFFENPAFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPELLVDIV 375
Query: 367 ARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQ 426
ARIL+MVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARM+DLGLKCRDVRTREAGIQ
Sbjct: 376 ARILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQ 435
Query: 427 DIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKC 486
DIHH+I+P+EVELVRRDY ANEGWETFLSYEDT+QDIL+GLLRLRKCGRNVTCPEL+G+C
Sbjct: 436 DIHHKIRPDEVELVRRDYAANEGWETFLSYEDTQQDILIGLLRLRKCGRNVTCPELVGRC 495
Query: 487 SIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHY 546
SIVRELHVYGTAVPVHGR+ADKLQHQGYGTLLMEEAERIA EHRS+K+AVISGVGTRHY
Sbjct: 496 SIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARKEHRSKKIAVISGVGTRHY 555
Query: 547 YRKLGYELEGPYMVKYL 563
YRKLGYELEGPYMVK L
Sbjct: 556 YRKLGYELEGPYMVKCL 572
|
Histone acetyltransferase. Part of the large multiprotein complex Elongator that is involved in the regulation of transcription initiation and elongation. May also have a methyltransferase activity. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|Q5ZHS1|ELP3_CHICK Elongator complex protein 3 OS=Gallus gallus GN=ELP3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/545 (74%), Positives = 461/545 (84%)
Query: 20 GFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIA 79
G + L+ E + IA+I+ ++E + + V+LN +K+ KYGL+ P+LV++IA
Sbjct: 2 GQKRKDLSHAELMMMTIADIIKQLIEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIA 61
Query: 80 ALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEY 139
A+P R+AL+PKL+AKP+RTASGIAVVAVM KPHRCPHI TGNICVYCPGGPDSDFEY
Sbjct: 62 AVPPQHRKALVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEY 121
Query: 140 STQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYR 199
STQSYTGYEPTSMRAIRARY+PY+Q R R++QLK+LGHSVDKVEFI+MGGTFM+LP DYR
Sbjct: 122 STQSYTGYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDKVEFIVMGGTFMALPEDYR 181
Query: 200 DYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTR 259
DYFIRNLHDALSGHTS NV EAV YSE TKC+G+TIETRPDYCL HL MLSYGCTR
Sbjct: 182 DYFIRNLHDALSGHTSNNVAEAVKYSERSLTKCVGITIETRPDYCLKRHLSDMLSYGCTR 241
Query: 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFR 319
LEIGVQS YEDVARDTNRGHTV AV + F LAKDAGFKVVAHMMPDLPN+G+ERD + F
Sbjct: 242 LEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNMGLERDTDQFV 301
Query: 320 EFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRV 379
EFFE+P FR DG+K+YPTLVIRGTGLYELWKTGRY++YPP LVD+VARILA+VPPWTRV
Sbjct: 302 EFFENPAFRPDGMKLYPTLVIRGTGLYELWKTGRYKSYPPSTLVDLVARILALVPPWTRV 361
Query: 380 YRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVEL 439
YRVQRDIPMPLV+SGVE GNLRELALARM DLG +CRDVRTRE GIQ+IHH+++P ++EL
Sbjct: 362 YRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTQCRDVRTREVGIQEIHHKVRPYQIEL 421
Query: 440 VRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAV 499
+RRDYVAN GWETFLSYED QDILVGLLRLRKC PEL G SIVRELHVYG+ V
Sbjct: 422 IRRDYVANGGWETFLSYEDPEQDILVGLLRLRKCSEESFRPELKGGVSIVRELHVYGSVV 481
Query: 500 PVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYM 559
PV R+ K QHQG+G LLMEEAERIA EH S K+AVISGVGTR+YYRK+GYELEGPYM
Sbjct: 482 PVSSRDPSKFQHQGFGMLLMEEAERIAKEEHGSWKIAVISGVGTRNYYRKIGYELEGPYM 541
Query: 560 VKYLE 564
VK L+
Sbjct: 542 VKRLQ 546
|
Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|Q5RIC0|ELP3_DANRE Elongator complex protein 3 OS=Danio rerio GN=elp3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/538 (74%), Positives = 457/538 (84%)
Query: 26 LTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETD 85
L+ E + IA+++ +VE + + ++LN +K+ KYGL+ P+LV++IAA+P
Sbjct: 10 LSRAELMMMTIADVIKQLVEAHEEGKDINLNKVKTKTSAKYGLSAQPRLVDIIAAVPPHY 69
Query: 86 REALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYT 145
R AL+PKL+AKP+RTASGIAVVAVM KPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 70 RRALVPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYT 129
Query: 146 GYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRN 205
GYEPTSMRAIRARY+PY+Q R R++QLK+LGHSVDKVEFI+MGGTFM+LP +YRDYFIRN
Sbjct: 130 GYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRN 189
Query: 206 LHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQ 265
LHDALSGHTS NV EAV YSE TKC+G+TIETRPDYCL HL ML YGCTRLEIGVQ
Sbjct: 190 LHDALSGHTSNNVTEAVRYSERSNTKCVGITIETRPDYCLKRHLSDMLGYGCTRLEIGVQ 249
Query: 266 STYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325
S YEDVARDTNRGHTV AV + F LAKDAGFKVVAHMMPDLPNVG+ERD+E F EFFE+P
Sbjct: 250 SVYEDVARDTNRGHTVRAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDVEQFIEFFENP 309
Query: 326 LFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRD 385
FR DGLK+YPTLVIRGTGLYELWKTGRY++Y P LVD+VARILA+VPPWTRVYRVQRD
Sbjct: 310 AFRPDGLKLYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALVPPWTRVYRVQRD 369
Query: 386 IPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYV 445
IPMPLV+SGVE GNLRELALARM D+G +CRDVRTRE GIQ+IHH+++P +VEL+RRDYV
Sbjct: 370 IPMPLVSSGVEHGNLRELALARMKDMGTECRDVRTREVGIQEIHHKVRPYQVELIRRDYV 429
Query: 446 ANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGRE 505
AN GWETFLSYED QDIL+GLLRLR+C PEL G SIVRELHVYG+ VPV R+
Sbjct: 430 ANGGWETFLSYEDPEQDILIGLLRLRRCSPQSFRPELKGGVSIVRELHVYGSVVPVSSRD 489
Query: 506 ADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 563
K QHQG+G +LMEEAERIA EH S K+AVISGVGTR+YYRK+GYELEGPYMVK L
Sbjct: 490 PSKFQHQGFGMMLMEEAERIARDEHGSSKLAVISGVGTRNYYRKMGYELEGPYMVKNL 547
|
Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|Q5HZM6|ELP3_XENLA Elongator complex protein 3 OS=Xenopus laevis GN=elp3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/550 (72%), Positives = 462/550 (84%), Gaps = 2/550 (0%)
Query: 15 RPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKL 74
+P RG +++ E + +A+++ +VE + + V+LN +K+ KYGL+ P+L
Sbjct: 2 KPDRG--MRGNMSQAELMMMTVADVIKQLVEAHEQGKDVNLNKLKTKTSAKYGLSAQPRL 59
Query: 75 VEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPD 134
V++IAA+P R+ L+PKL+AKP+RTASGIAVVAVM KPHRCPHI TGNICVYCPGGPD
Sbjct: 60 VDIIAAVPPQYRKILVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPD 119
Query: 135 SDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSL 194
SDFEYSTQSYTGYEPTSMRAIRARY+PY+Q R R++QLK+LGH+VDKVEFI+MGGTFM+L
Sbjct: 120 SDFEYSTQSYTGYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHNVDKVEFIVMGGTFMAL 179
Query: 195 PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLS 254
P DYRD+FIRNLHDALSGHTS +V EAV YSE TKC+G+TIETRPDYCL HL ML
Sbjct: 180 PEDYRDFFIRNLHDALSGHTSNSVSEAVRYSERSNTKCVGITIETRPDYCLKRHLSDMLC 239
Query: 255 YGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERD 314
YGCTRLEIGVQS YEDVARDTNRGHTV AV + F L+KDAGFKVV+HMMPDLPN+G+ERD
Sbjct: 240 YGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLSKDAGFKVVSHMMPDLPNMGLERD 299
Query: 315 LESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374
+E F EFFE+P FR DG+K+YPTLVIRGTGLYELWKTGRYR+Y P LVD+VARILA+VP
Sbjct: 300 IEQFIEFFENPAFRPDGMKLYPTLVIRGTGLYELWKTGRYRSYSPSTLVDLVARILALVP 359
Query: 375 PWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKP 434
PWTRVYRVQRDIPMPLV+SGVE GNLRELALARM DLG +CRDVRTRE GIQ+IHH+++P
Sbjct: 360 PWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTECRDVRTREVGIQEIHHKVRP 419
Query: 435 EEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHV 494
+VEL+RRDYVAN GWETFLSYED QDIL+GLLRLRKC PEL G SIVRELHV
Sbjct: 420 YQVELIRRDYVANGGWETFLSYEDPEQDILIGLLRLRKCSEESFRPELKGGVSIVRELHV 479
Query: 495 YGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYEL 554
YG+ VP+ R+ K QHQG+G LLMEEAERIA EH S K+AVISGVGTR+YYRK+GYEL
Sbjct: 480 YGSVVPISSRDPSKFQHQGFGMLLMEEAERIARDEHGSWKIAVISGVGTRNYYRKIGYEL 539
Query: 555 EGPYMVKYLE 564
EGPYMVK L+
Sbjct: 540 EGPYMVKRLD 549
|
Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|Q9VQZ6|ELP3_DROME Probable elongator complex protein 3 OS=Drosophila melanogaster GN=Elp3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/540 (73%), Positives = 460/540 (85%)
Query: 25 GLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPET 84
GL+ +E +V I EI+ +++ + V+LN +KS KYGL +P+LV++IAA+P+
Sbjct: 10 GLSRQERQVLVIGEIIQELLKAHEAKKDVNLNRMKSLVASKYGLDSSPRLVDIIAAVPQD 69
Query: 85 DREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSY 144
++ LLPKLRAKP+RTASGIAVVAVM KPHRCPHI TGNICVYCPGGPDSDFEYSTQSY
Sbjct: 70 AKKILLPKLRAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSY 129
Query: 145 TGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIR 204
TGYEPTSMRAIR+RY+P++Q R R++QLK+LGHSVDKVEFI+MGGTFM LP +YRDYFIR
Sbjct: 130 TGYEPTSMRAIRSRYDPFLQTRHRVEQLKQLGHSVDKVEFIVMGGTFMCLPEEYRDYFIR 189
Query: 205 NLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGV 264
NLHDALSGH+SANV EAV YSE TKCIG+TIETRPDYCL H+ MLSYGCTRLEIGV
Sbjct: 190 NLHDALSGHSSANVAEAVRYSEKSRTKCIGITIETRPDYCLKRHISDMLSYGCTRLEIGV 249
Query: 265 QSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFES 324
QS YEDVARDTNRGHTV AV + F L KDAG+K+V HMMPDLPNV ERD+E F E+FE+
Sbjct: 250 QSVYEDVARDTNRGHTVRAVCESFQLGKDAGYKIVTHMMPDLPNVDFERDIEQFIEYFEN 309
Query: 325 PLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQR 384
P FR+DGLKIYPTLVIRGTGLYELWKTGRY++YPP LVD+VA+ILA+VPPWTRVYRVQR
Sbjct: 310 PAFRSDGLKIYPTLVIRGTGLYELWKTGRYKSYPPSMLVDLVAKILALVPPWTRVYRVQR 369
Query: 385 DIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDY 444
DIPMPLV+SGVE GNLRELALARM DLG CRDVRTRE GIQ+IH++++P E+EL+RRDY
Sbjct: 370 DIPMPLVSSGVEHGNLRELALARMKDLGTTCRDVRTREVGIQEIHNKVRPYEIELIRRDY 429
Query: 445 VANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGR 504
VAN GWETFLSYED QDILVGLLRLRKC + PEL G+CSIVRELHVYG+ VPV+ R
Sbjct: 430 VANGGWETFLSYEDPEQDILVGLLRLRKCSPDTFRPELKGECSIVRELHVYGSVVPVNAR 489
Query: 505 EADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
+ K QHQG+G LLMEEAERIA EH S K+AVISGVGTR+YYRK+GY+L+GPYM K +E
Sbjct: 490 DPTKFQHQGFGMLLMEEAERIAREEHGSTKLAVISGVGTRNYYRKMGYQLDGPYMSKSIE 549
|
Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|Q6NVL5|ELP3_XENTR Elongator complex protein 3 OS=Xenopus tropicalis GN=elp3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/538 (73%), Positives = 456/538 (84%)
Query: 27 TEEEARVRAIAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDR 86
++ E + +A+++ +VE + + V+LN +K+ KYGL+ P+LV++IAA+P R
Sbjct: 12 SQAELMMMTVADVIKQLVEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAAVPPQYR 71
Query: 87 EALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTG 146
+ L+PKL+AKP+RTASGIAVVAVM KPHRCPHI TGNICVYCPGGPDSDFEYSTQSYTG
Sbjct: 72 KILVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTG 131
Query: 147 YEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNL 206
YEPTSMRAIRARY+PY+Q R R++QLK+LGHSVDKVEFI+MGGTFM+L DYRD+FIRNL
Sbjct: 132 YEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDKVEFIVMGGTFMALSEDYRDFFIRNL 191
Query: 207 HDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQS 266
HDALSGHTS +V EAV YSE TKC+G+TIETRPDYCL HL MLSYGCTRLEIGVQS
Sbjct: 192 HDALSGHTSNSVSEAVRYSERSNTKCVGITIETRPDYCLKRHLSDMLSYGCTRLEIGVQS 251
Query: 267 TYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPL 326
YEDVARDTNRGHTV AV + F +AKDAGFKVV+HMMPDLPNVG+ERD E F EFFE+P
Sbjct: 252 VYEDVARDTNRGHTVKAVCESFHMAKDAGFKVVSHMMPDLPNVGLERDTEQFIEFFENPA 311
Query: 327 FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDI 386
FR DG+K+YPTLVIRGTGLYELWKTGRYR+Y P LVD+VARILA+VPPWTRVYRVQRDI
Sbjct: 312 FRPDGMKLYPTLVIRGTGLYELWKTGRYRSYSPSTLVDLVARILALVPPWTRVYRVQRDI 371
Query: 387 PMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVA 446
PMPLV+SGVE GNLRELALARM DLG +CRDVRTRE GIQ+IHH+++P +VEL+RRDYVA
Sbjct: 372 PMPLVSSGVEHGNLRELALARMKDLGTECRDVRTREVGIQEIHHKVRPYQVELIRRDYVA 431
Query: 447 NEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREA 506
N GWETFLSYED QDIL+GLLRLRKC PEL G SIVRELHVYG+ VP+ R+
Sbjct: 432 NGGWETFLSYEDPEQDILIGLLRLRKCSEQSFRPELKGGVSIVRELHVYGSVVPISSRDP 491
Query: 507 DKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
K QHQG+G LLMEEAERIA EH S K+AVISGVGTR+YYRKLGYELEGPYMVK L+
Sbjct: 492 SKFQHQGFGMLLMEEAERIAREEHGSCKIAVISGVGTRNYYRKLGYELEGPYMVKKLD 549
|
Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|Q1ZXC6|ELP3_DICDI Probable elongator complex protein 3 OS=Dictyostelium discoideum GN=elp3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/530 (73%), Positives = 452/530 (85%)
Query: 34 RAIAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKL 93
+ + EIVN+++ ++ + V+L IK+ K L+ PK V++I+A+PE+ + LLP L
Sbjct: 29 KTVGEIVNALINAYKEGKKVNLLKIKTELAAKNSLSDQPKSVDIISAIPESYKNTLLPLL 88
Query: 94 RAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMR 153
+AKPVRTASGIAVVAVM KPHRCPH+A TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMR
Sbjct: 89 KAKPVRTASGIAVVAVMCKPHRCPHLAMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMR 148
Query: 154 AIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGH 213
AIRARYNP++Q R RIDQLKRLGH+V+KVEFI+MGGTFMSLP+DYRDYFIRNLHDALSGH
Sbjct: 149 AIRARYNPFLQTRHRIDQLKRLGHNVEKVEFIIMGGTFMSLPSDYRDYFIRNLHDALSGH 208
Query: 214 TSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273
TS NV EAV YSE KC+G+TIETRPD+CL HL ML+YGCTRLEIGVQS +ED+AR
Sbjct: 209 TSNNVAEAVKYSEQSNVKCVGITIETRPDHCLKLHLSNMLTYGCTRLEIGVQSVFEDIAR 268
Query: 274 DTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLK 333
DTNRGHTV AV + F LAKD+GFKVVAHMMPDLPN+G+ERD+ F EFFE+P FRADGLK
Sbjct: 269 DTNRGHTVRAVLESFQLAKDSGFKVVAHMMPDLPNMGMERDIYGFMEFFENPAFRADGLK 328
Query: 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTS 393
IYPTLVIRGTGLYELWKTG Y+NY P+ LVD++A++LA+VPPWTR+YR+QRDIPMPLVTS
Sbjct: 329 IYPTLVIRGTGLYELWKTGTYKNYSPDSLVDLIAKVLALVPPWTRIYRIQRDIPMPLVTS 388
Query: 394 GVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETF 453
GVE GNLREL LARM D G KCRDVRTRE GIQ++HH+IKP++VEL+RRDYVAN GWETF
Sbjct: 389 GVEYGNLRELCLARMKDFGTKCRDVRTREVGIQEVHHKIKPDQVELIRRDYVANGGWETF 448
Query: 454 LSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQG 513
LS+ED +QDIL+GLLRLRKC PEL CSIVRELHVYG+ V +H R+ K QHQG
Sbjct: 449 LSFEDPKQDILIGLLRLRKCSETSFRPELKENCSIVRELHVYGSVVGIHNRDPTKFQHQG 508
Query: 514 YGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 563
YGTLLMEEAERIA EH S K+AVI+GVGTRHYYRKLGYEL+G Y+ KYL
Sbjct: 509 YGTLLMEEAERIAREEHGSIKLAVIAGVGTRHYYRKLGYELDGVYVSKYL 558
|
Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|Q9H9T3|ELP3_HUMAN Elongator complex protein 3 OS=Homo sapiens GN=ELP3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/539 (73%), Positives = 457/539 (84%)
Query: 26 LTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETD 85
L+ E + I +++ ++E + + +DLN +K+ KYGL+ P+LV++IAA+P
Sbjct: 9 LSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDIIAAVPPQY 68
Query: 86 REALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYT 145
R+ L+PKL+AKP+RTASGIAVVAVM KPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 69 RKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYT 128
Query: 146 GYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRN 205
GYEPTSMRAIRARY+P++Q R RI+QLK+LGHSVDKVEFI+MGGTFM+LP +YRDYFIRN
Sbjct: 129 GYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRN 188
Query: 206 LHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQ 265
LHDALSGHTS N+ EAV YSE TKCIG+TIETRPDYC+ HL ML+YGCTRLEIGVQ
Sbjct: 189 LHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQ 248
Query: 266 STYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325
S YEDVARDTNRGHTV AV + F LAKD+GFKVVAHMMPDLPNVG+ERD+E F EFFE+P
Sbjct: 249 SVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQFTEFFENP 308
Query: 326 LFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRD 385
FR DGLK+YPTLVIRGTGLYELWK+GRY++Y P LV++VARILA+VPPWTRVYRVQRD
Sbjct: 309 AFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWTRVYRVQRD 368
Query: 386 IPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYV 445
IPMPLV+SGVE GNLRELALARM DLG++CRDVRTRE GIQ+IHH+++P +VELVRRDYV
Sbjct: 369 IPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYV 428
Query: 446 ANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGRE 505
AN GWETFLSYED QDIL+GLLRLRKC EL G SIVRELHVYG+ VPV R+
Sbjct: 429 ANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRD 488
Query: 506 ADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
K QHQG+G LLMEEAERIA EH S K+AVISGVGTR+YYRK+GY L+GPYMVK L+
Sbjct: 489 PTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGPYMVKMLK 547
|
Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. May also have a methyltransferase activity. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|Q2KJ61|ELP3_BOVIN Elongator complex protein 3 OS=Bos taurus GN=ELP3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/539 (72%), Positives = 457/539 (84%)
Query: 26 LTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETD 85
L+ + + I +++ ++E + + +DLN +K+ KYGL+ P+LV++IAA+P
Sbjct: 9 LSPAQLMMLTIGDVIKQLIEAHEQGKDIDLNKVKTRTAAKYGLSAQPRLVDIIAAVPPQY 68
Query: 86 REALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYT 145
R+ L+PKL+AKP+RTASGIAVVAVM KPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 69 RKVLVPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYT 128
Query: 146 GYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRN 205
GYEPTSMRAIRARY+PY+Q R RI+QLK+LGHSVDKVEFI+MGGTFM+LP +YRDYFIRN
Sbjct: 129 GYEPTSMRAIRARYDPYLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRN 188
Query: 206 LHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQ 265
LHDALSGHTS N+ EAV YSE TKCIG+TIETRPDYC+ HL ML+YGCTRLEIGVQ
Sbjct: 189 LHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQ 248
Query: 266 STYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325
S YEDVARDTNRGHTV AV + F LAKD+GFKVVAHMMPDLPNVG+ERD+E F EFFE+P
Sbjct: 249 SVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQFTEFFENP 308
Query: 326 LFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRD 385
FR DGLK+YPTLVIRGTGLYELWK+GRY++Y P L+++VARILA+VPPWTRVYRVQRD
Sbjct: 309 AFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLIELVARILALVPPWTRVYRVQRD 368
Query: 386 IPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYV 445
IPMPLV+SGVE GNLRELA ARM DLG++CRDVRTRE GIQ+IHH+++P +VELVRRDYV
Sbjct: 369 IPMPLVSSGVEHGNLRELAFARMKDLGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYV 428
Query: 446 ANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGRE 505
AN GWETFLSYED QDIL+GLLRLRKC EL+G SIVRELHVYG+ VPV R+
Sbjct: 429 ANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELVGGVSIVRELHVYGSVVPVSSRD 488
Query: 506 ADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
K QHQG+G LLMEEAERIA EH S K+AVISGVGTR+YYRK+GY L+GPYMVK LE
Sbjct: 489 PTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGPYMVKTLE 547
|
Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. May also have a methyltransferase activity. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 564 | ||||||
| 255540377 | 563 | Elongator complex protein, putative [Ric | 0.996 | 0.998 | 0.959 | 0.0 | |
| 224136043 | 563 | histone acetyltransferase [Populus trich | 0.996 | 0.998 | 0.952 | 0.0 | |
| 224119572 | 563 | histone acetyltransferase [Populus trich | 0.996 | 0.998 | 0.953 | 0.0 | |
| 449440592 | 564 | PREDICTED: elongator complex protein 3-l | 1.0 | 1.0 | 0.932 | 0.0 | |
| 356508774 | 564 | PREDICTED: elongator complex protein 3-l | 0.996 | 0.996 | 0.936 | 0.0 | |
| 356516591 | 564 | PREDICTED: elongator complex protein 3-l | 0.992 | 0.992 | 0.932 | 0.0 | |
| 225457433 | 563 | PREDICTED: elongator complex protein 3 [ | 0.996 | 0.998 | 0.928 | 0.0 | |
| 297795799 | 565 | hypothetical protein ARALYDRAFT_495092 [ | 0.998 | 0.996 | 0.921 | 0.0 | |
| 18423134 | 565 | Elongator complex protein 3 [Arabidopsis | 0.998 | 0.996 | 0.920 | 0.0 | |
| 9758914 | 559 | histone acetyltransferase [Arabidopsis t | 0.984 | 0.992 | 0.926 | 0.0 |
| >gi|255540377|ref|XP_002511253.1| Elongator complex protein, putative [Ricinus communis] gi|223550368|gb|EEF51855.1| Elongator complex protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1116 bits (2886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/563 (95%), Positives = 551/563 (97%), Gaps = 1/563 (0%)
Query: 1 MATAVLPQDAKKLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKS 60
MATAV+ D+KKLPRPGRGG+QAHGLTEEEARVRAIAEIVNSMVELSRKN+TVDLNAIKS
Sbjct: 1 MATAVM-SDSKKLPRPGRGGYQAHGLTEEEARVRAIAEIVNSMVELSRKNQTVDLNAIKS 59
Query: 61 AACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
AACRKYGLARAPKLVEMIAALPE+DRE+LLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 60 AACRKYGLARAPKLVEMIAALPESDRESLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 119
Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD 180
TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYN YVQARSRIDQLKRLGHSVD
Sbjct: 120 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNSYVQARSRIDQLKRLGHSVD 179
Query: 181 KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETR 240
KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV YSEHGA KCIGMTIETR
Sbjct: 180 KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGAVKCIGMTIETR 239
Query: 241 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300
PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA
Sbjct: 240 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 299
Query: 301 HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE 360
HMMPDLPNVGVERD+ESFREFFESP FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE
Sbjct: 300 HMMPDLPNVGVERDMESFREFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE 359
Query: 361 QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 420
QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT
Sbjct: 360 QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 419
Query: 421 REAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCP 480
REAGIQDIHH+I+PEEVELVRRDY ANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCP
Sbjct: 420 REAGIQDIHHKIRPEEVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCP 479
Query: 481 ELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540
ELMGKCSIVRELHVYGTAVPVHGR+ADKLQHQGYGTLLMEEAERIA EHRS K+AVISG
Sbjct: 480 ELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARCEHRSTKIAVISG 539
Query: 541 VGTRHYYRKLGYELEGPYMVKYL 563
VGTRHYYRKLGY LEGPYMVK L
Sbjct: 540 VGTRHYYRKLGYGLEGPYMVKCL 562
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136043|ref|XP_002322225.1| histone acetyltransferase [Populus trichocarpa] gi|222869221|gb|EEF06352.1| histone acetyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1111 bits (2874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/563 (95%), Positives = 551/563 (97%), Gaps = 1/563 (0%)
Query: 1 MATAVLPQDAKKLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKS 60
MATAV+ + KKLPRPGRGG+Q HGLTEEEARVRAIAEIVNSMV+LSRKN+TVDLNA+KS
Sbjct: 1 MATAVI-TETKKLPRPGRGGYQPHGLTEEEARVRAIAEIVNSMVDLSRKNQTVDLNALKS 59
Query: 61 AACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
AACRKYGLARAPKLVEMIAALP++DRE+LLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 60 AACRKYGLARAPKLVEMIAALPDSDRESLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 119
Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD 180
TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD
Sbjct: 120 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD 179
Query: 181 KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETR 240
KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV YSEHGATKCIGMTIETR
Sbjct: 180 KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETR 239
Query: 241 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300
PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA
Sbjct: 240 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 299
Query: 301 HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE 360
HMMPDLPNVGVERDLESFREFFESP FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE
Sbjct: 300 HMMPDLPNVGVERDLESFREFFESPCFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE 359
Query: 361 QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 420
QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT
Sbjct: 360 QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 419
Query: 421 REAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCP 480
REAGIQDIHH+IKPEEV+LVRRDY ANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCP
Sbjct: 420 REAGIQDIHHKIKPEEVQLVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCP 479
Query: 481 ELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540
EL GKCSIVRELHVYGTAVPVHGR+A+KLQHQGYGTLLMEEAE+IA EHRS K+AVISG
Sbjct: 480 ELTGKCSIVRELHVYGTAVPVHGRDAEKLQHQGYGTLLMEEAEQIARKEHRSTKIAVISG 539
Query: 541 VGTRHYYRKLGYELEGPYMVKYL 563
VGTRHYYRKLGYELEGPYMVK L
Sbjct: 540 VGTRHYYRKLGYELEGPYMVKSL 562
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119572|ref|XP_002318107.1| histone acetyltransferase [Populus trichocarpa] gi|222858780|gb|EEE96327.1| histone acetyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1111 bits (2873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/563 (95%), Positives = 550/563 (97%), Gaps = 1/563 (0%)
Query: 1 MATAVLPQDAKKLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKS 60
MATAV+ + KKLPRPGRGG+Q H LTEEEARVRAIAEIVNSMVELSRKN+TVDLNA+KS
Sbjct: 1 MATAVI-TETKKLPRPGRGGYQPHVLTEEEARVRAIAEIVNSMVELSRKNQTVDLNALKS 59
Query: 61 AACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
AACRKYGLARAPKLVEMIAALPE+DRE+LLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 60 AACRKYGLARAPKLVEMIAALPESDRESLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 119
Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD 180
TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD
Sbjct: 120 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD 179
Query: 181 KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETR 240
KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV YSEHGATKCIGMTIETR
Sbjct: 180 KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETR 239
Query: 241 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300
PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA
Sbjct: 240 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 299
Query: 301 HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE 360
HMMPDLPNVGVERDLESFREFFESP FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE
Sbjct: 300 HMMPDLPNVGVERDLESFREFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE 359
Query: 361 QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 420
QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT
Sbjct: 360 QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 419
Query: 421 REAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCP 480
REAGIQDIHH+IKPEEV+LVRRDY ANEGWETFLSYEDTRQDILVGLLRLRKCG NVTCP
Sbjct: 420 REAGIQDIHHKIKPEEVQLVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGCNVTCP 479
Query: 481 ELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540
ELMGKCSIVRELHVYGTAVPVHGR+A+KLQHQGYGTLLMEEAE IA EHRS K+AVISG
Sbjct: 480 ELMGKCSIVRELHVYGTAVPVHGRDAEKLQHQGYGTLLMEEAEHIARKEHRSTKIAVISG 539
Query: 541 VGTRHYYRKLGYELEGPYMVKYL 563
VGTRHYYRKLGYELEGPYMVK+L
Sbjct: 540 VGTRHYYRKLGYELEGPYMVKFL 562
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440592|ref|XP_004138068.1| PREDICTED: elongator complex protein 3-like [Cucumis sativus] gi|449501374|ref|XP_004161350.1| PREDICTED: elongator complex protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1100 bits (2846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/564 (93%), Positives = 547/564 (96%)
Query: 1 MATAVLPQDAKKLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKS 60
MATA++ + +KLPRPGRGGF+ HG +EEEARVRAIAEIVNSMV+LSRK + VDLNA+KS
Sbjct: 1 MATAMVAEPNRKLPRPGRGGFEGHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60
Query: 61 AACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
AACRKYGLARAPKLVEMIAALPE+DRE LLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 61 AACRKYGLARAPKLVEMIAALPESDRETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD 180
TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD
Sbjct: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD 180
Query: 181 KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETR 240
KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV YSEHGA KCIGMTIETR
Sbjct: 181 KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGAVKCIGMTIETR 240
Query: 241 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300
PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA
Sbjct: 241 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300
Query: 301 HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE 360
HMMPDLPNVGVERD+ESFREFFE+P FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE
Sbjct: 301 HMMPDLPNVGVERDMESFREFFENPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE 360
Query: 361 QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 420
QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT
Sbjct: 361 QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 420
Query: 421 REAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCP 480
REAGIQDIHH+IKP+EVELVRRDY+ANEGWETFLSYED RQDILVGLLRLR+CGRN TCP
Sbjct: 421 REAGIQDIHHKIKPDEVELVRRDYMANEGWETFLSYEDVRQDILVGLLRLRRCGRNTTCP 480
Query: 481 ELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540
EL+GKCSIVRELHVYGTAVPVHGR+ +KLQHQGYGTLLMEEAERIA EHRS+K+AVISG
Sbjct: 481 ELLGKCSIVRELHVYGTAVPVHGRDTEKLQHQGYGTLLMEEAERIARHEHRSKKIAVISG 540
Query: 541 VGTRHYYRKLGYELEGPYMVKYLE 564
VGTRHYYRKLGYELEGPYMVK LE
Sbjct: 541 VGTRHYYRKLGYELEGPYMVKNLE 564
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508774|ref|XP_003523129.1| PREDICTED: elongator complex protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1100 bits (2845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/563 (93%), Positives = 547/563 (97%), Gaps = 1/563 (0%)
Query: 1 MATAVLPQDAKKLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKS 60
MA A + + +K PRPG+GG++AHGL+EEEARVRAIAEIV+SMV+LS K + VDLNA+KS
Sbjct: 1 MAAAAVAE-VRKAPRPGKGGYEAHGLSEEEARVRAIAEIVSSMVDLSHKGQNVDLNALKS 59
Query: 61 AACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
AACRKYGL+RAPKLVEMIAALP+ +RE LLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 60 AACRKYGLSRAPKLVEMIAALPDAERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 119
Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD 180
TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD
Sbjct: 120 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD 179
Query: 181 KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETR 240
KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV YSEHGATKCIGMTIETR
Sbjct: 180 KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETR 239
Query: 241 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300
PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA
Sbjct: 240 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 299
Query: 301 HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE 360
HMMPDLPNVGVERD+ESFREFFESP+FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE
Sbjct: 300 HMMPDLPNVGVERDMESFREFFESPMFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE 359
Query: 361 QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 420
QLVDI+ARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT
Sbjct: 360 QLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 419
Query: 421 REAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCP 480
REAGIQDIHHQIKPEEVELVRRDY+ANEGWETFLSYEDTRQDILVGLLRLRKCGRN TCP
Sbjct: 420 REAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCP 479
Query: 481 ELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540
ELMGKCSIVRELHVYGTAVPVHGR+ADKLQHQGYGTLLMEEAERIA EHRS K+AVISG
Sbjct: 480 ELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISG 539
Query: 541 VGTRHYYRKLGYELEGPYMVKYL 563
VGTRHYYRKLGYELEGPYMVKYL
Sbjct: 540 VGTRHYYRKLGYELEGPYMVKYL 562
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516591|ref|XP_003526977.1| PREDICTED: elongator complex protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1090 bits (2820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/560 (93%), Positives = 542/560 (96%)
Query: 4 AVLPQDAKKLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKSAAC 63
AV + K PRPG+GG++AHGL+EEEARVRAIAEIV+SMV+LS K + VDLNA+KSAAC
Sbjct: 3 AVAVAEVGKAPRPGQGGYEAHGLSEEEARVRAIAEIVSSMVDLSHKGQNVDLNALKSAAC 62
Query: 64 RKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTG 123
RKY L+RAPKLVEMIAALP+ +RE LLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTG
Sbjct: 63 RKYRLSRAPKLVEMIAALPDAERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTG 122
Query: 124 NICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVE 183
NICVYCPGGPDSDFEYSTQSYTGYEPTSMRA+RARYNPYVQAR RIDQLKRLGHSVDKVE
Sbjct: 123 NICVYCPGGPDSDFEYSTQSYTGYEPTSMRAVRARYNPYVQARCRIDQLKRLGHSVDKVE 182
Query: 184 FILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDY 243
FILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV YSEHGATKCIGMTIETRPDY
Sbjct: 183 FILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDY 242
Query: 244 CLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMM 303
CLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMM
Sbjct: 243 CLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMM 302
Query: 304 PDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLV 363
PDLPNVGVERD+ESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLV
Sbjct: 303 PDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLV 362
Query: 364 DIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREA 423
DI+ARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARM+DLGLKCRDVRTREA
Sbjct: 363 DIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREA 422
Query: 424 GIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELM 483
GIQDIHHQIKPEEVELVRRDY+AN+GWETFLSYEDTRQDILVGLLRLRKCGRN TCPELM
Sbjct: 423 GIQDIHHQIKPEEVELVRRDYMANQGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELM 482
Query: 484 GKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGT 543
GKCSIVRELHVYGTAVPVHGR+ADKLQHQGYGTLLMEEAERIA EHRS K+AVISGVGT
Sbjct: 483 GKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGT 542
Query: 544 RHYYRKLGYELEGPYMVKYL 563
RHYYRKLGYELEGPYMVKYL
Sbjct: 543 RHYYRKLGYELEGPYMVKYL 562
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457433|ref|XP_002262701.1| PREDICTED: elongator complex protein 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/563 (92%), Positives = 545/563 (96%), Gaps = 1/563 (0%)
Query: 1 MATAVLPQDAKKLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKS 60
MATAV+ + ++KLPRPGRGG +HGL+EEEARVRAIAEIVN+MVELS + E VDLNA+KS
Sbjct: 1 MATAVVAE-SRKLPRPGRGGVVSHGLSEEEARVRAIAEIVNNMVELSHRGENVDLNALKS 59
Query: 61 AACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
AACRKYGL+RAPKLVEMIAALPE++R++LLP+LRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 60 AACRKYGLSRAPKLVEMIAALPESERDSLLPRLRAKPVRTASGIAVVAVMSKPHRCPHIA 119
Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD 180
TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD
Sbjct: 120 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVD 179
Query: 181 KVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETR 240
KVEFILMGGTFMSLPA+YRDYF RNLHDALSGHTSANVEEAV YSEH A KCIGMTIETR
Sbjct: 180 KVEFILMGGTFMSLPAEYRDYFTRNLHDALSGHTSANVEEAVAYSEHSAIKCIGMTIETR 239
Query: 241 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300
PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA
Sbjct: 240 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 299
Query: 301 HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE 360
HMMPDLPNVGVERDLESFREFFESP+FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE
Sbjct: 300 HMMPDLPNVGVERDLESFREFFESPMFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPE 359
Query: 361 QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 420
QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT
Sbjct: 360 QLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 419
Query: 421 REAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCP 480
REAGIQDIHH+IKPEEVELVRRDY ANEGWETFLSYED RQDILVGLLRLRKCGRN TCP
Sbjct: 420 REAGIQDIHHKIKPEEVELVRRDYTANEGWETFLSYEDIRQDILVGLLRLRKCGRNTTCP 479
Query: 481 ELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540
EL+G+CSIVRELHVYGTAVPVHGR+ADKLQHQGYGTLLME AERIA EHRS K+AVISG
Sbjct: 480 ELIGRCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEAAERIAGREHRSTKIAVISG 539
Query: 541 VGTRHYYRKLGYELEGPYMVKYL 563
VGTRHYYRKLGYELEGPYMVKYL
Sbjct: 540 VGTRHYYRKLGYELEGPYMVKYL 562
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297795799|ref|XP_002865784.1| hypothetical protein ARALYDRAFT_495092 [Arabidopsis lyrata subsp. lyrata] gi|297311619|gb|EFH42043.1| hypothetical protein ARALYDRAFT_495092 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1087 bits (2812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/564 (92%), Positives = 545/564 (96%), Gaps = 1/564 (0%)
Query: 1 MATAVLPQ-DAKKLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIK 59
MATAV+ + KK PRPG+GG+Q GLTEEEARVRAI+EIV++M+E S +NE VDLNAIK
Sbjct: 1 MATAVVMNGELKKQPRPGKGGYQGRGLTEEEARVRAISEIVSTMIERSHRNENVDLNAIK 60
Query: 60 SAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHI 119
+AACRKYGLARAPKLVEMIAALP+++RE LLPKLRAKPVRTASGIAVVAVMSKPHRCPHI
Sbjct: 61 TAACRKYGLARAPKLVEMIAALPDSERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHI 120
Query: 120 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV 179
ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV
Sbjct: 121 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV 180
Query: 180 DKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239
DKVEFILMGGTFMSLPA+YRD+FIRNLHDALSGHTSANVEEAV YSEH ATKCIGMTIET
Sbjct: 181 DKVEFILMGGTFMSLPAEYRDFFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIET 240
Query: 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV 299
RPDYCLGPHLRQML+YGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV
Sbjct: 241 RPDYCLGPHLRQMLTYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV 300
Query: 300 AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPP 359
AHMMPDLPNVGVERD+ESF+EFFESP FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPP
Sbjct: 301 AHMMPDLPNVGVERDMESFKEFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPP 360
Query: 360 EQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419
EQLVDIVARIL+MVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR
Sbjct: 361 EQLVDIVARILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 420
Query: 420 TREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTC 479
TREAGIQDIHH+IKPE+VELVRRDY ANEGWETFLSYEDTRQDILVGLLRLRKCG+NVTC
Sbjct: 421 TREAGIQDIHHKIKPEQVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGKNVTC 480
Query: 480 PELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS 539
PELMGKCS+VRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIA EHRS K+ VIS
Sbjct: 481 PELMGKCSVVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIARREHRSNKIGVIS 540
Query: 540 GVGTRHYYRKLGYELEGPYMVKYL 563
GVGTRHYYRKLGYELEGPYMVK+L
Sbjct: 541 GVGTRHYYRKLGYELEGPYMVKHL 564
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18423134|ref|NP_568725.1| Elongator complex protein 3 [Arabidopsis thaliana] gi|75305923|sp|Q93ZR1.1|ELP3_ARATH RecName: Full=Elongator complex protein 3; Short=AtELP3; AltName: Full=Elongator component 3; AltName: Full=Protein ELONGATA 3; AltName: Full=Protein ENHANCER-OF-ASYMMETRIC-LEAVES-TWO1 gi|15810569|gb|AAL07172.1| putative histone acetyltransferase [Arabidopsis thaliana] gi|66841024|emb|CAI79647.1| elongator component [Arabidopsis thaliana] gi|332008542|gb|AED95925.1| Elongator complex protein 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1084 bits (2803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/564 (92%), Positives = 544/564 (96%), Gaps = 1/564 (0%)
Query: 1 MATAVLPQ-DAKKLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIK 59
MATAV+ + KK PRPG+GG+Q GLTEEEARVRAI+EIV++M+E S +NE VDLNAIK
Sbjct: 1 MATAVVMNGELKKQPRPGKGGYQGRGLTEEEARVRAISEIVSTMIERSHRNENVDLNAIK 60
Query: 60 SAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHI 119
+AACRKYGLARAPKLVEMIAALP+++RE LLPKLRAKPVRTASGIAVVAVMSKPHRCPHI
Sbjct: 61 TAACRKYGLARAPKLVEMIAALPDSERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHI 120
Query: 120 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV 179
ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV
Sbjct: 121 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV 180
Query: 180 DKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239
DKVEFILMGGTFMSLPA+YRD+FIRNLHDALSGHTSANVEEAV YSEH ATKCIGMTIET
Sbjct: 181 DKVEFILMGGTFMSLPAEYRDFFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIET 240
Query: 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV 299
RPDYCLGPHLRQML YGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV
Sbjct: 241 RPDYCLGPHLRQMLIYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV 300
Query: 300 AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPP 359
AHMMPDLPNVGVERD+ESF+EFFESP FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPP
Sbjct: 301 AHMMPDLPNVGVERDMESFKEFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPP 360
Query: 360 EQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419
EQLVDIVARIL+MVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR
Sbjct: 361 EQLVDIVARILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 420
Query: 420 TREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTC 479
TREAGIQDIHH+IKPE+VELVRRDY ANEGWETFLSYEDTRQDILVGLLRLRKCG+NVTC
Sbjct: 421 TREAGIQDIHHKIKPEQVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGKNVTC 480
Query: 480 PELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS 539
PELMGKCS+VRELHVYGTAVPVHGR+ADKLQHQGYGTLLMEEAERIA EHRS K+ VIS
Sbjct: 481 PELMGKCSVVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARREHRSNKIGVIS 540
Query: 540 GVGTRHYYRKLGYELEGPYMVKYL 563
GVGTRHYYRKLGYELEGPYMVK+L
Sbjct: 541 GVGTRHYYRKLGYELEGPYMVKHL 564
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9758914|dbj|BAB09451.1| histone acetyltransferase [Arabidopsis thaliana] gi|15810049|gb|AAL06951.1| AT5g50320/MXI22_3 [Arabidopsis thaliana] gi|22137026|gb|AAM91358.1| At5g50320/MXI22_3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1080 bits (2793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/555 (92%), Positives = 538/555 (96%)
Query: 9 DAKKLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKSAACRKYGL 68
+ KK PRPG+GG+Q GLTEEEARVRAI+EIV++M+E S +NE VDLNAIK+AACRKYGL
Sbjct: 4 ELKKQPRPGKGGYQGRGLTEEEARVRAISEIVSTMIERSHRNENVDLNAIKTAACRKYGL 63
Query: 69 ARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVY 128
ARAPKLVEMIAALP+++RE LLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVY
Sbjct: 64 ARAPKLVEMIAALPDSERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVY 123
Query: 129 CPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMG 188
CPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMG
Sbjct: 124 CPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMG 183
Query: 189 GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPH 248
GTFMSLPA+YRD+FIRNLHDALSGHTSANVEEAV YSEH ATKCIGMTIETRPDYCLGPH
Sbjct: 184 GTFMSLPAEYRDFFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIETRPDYCLGPH 243
Query: 249 LRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN 308
LRQML YGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN
Sbjct: 244 LRQMLIYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN 303
Query: 309 VGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVAR 368
VGVERD+ESF+EFFESP FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVAR
Sbjct: 304 VGVERDMESFKEFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVAR 363
Query: 369 ILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDI 428
IL+MVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDI
Sbjct: 364 ILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDI 423
Query: 429 HHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSI 488
HH+IKPE+VELVRRDY ANEGWETFLSYEDTRQDILVGLLRLRKCG+NVTCPELMGKCS+
Sbjct: 424 HHKIKPEQVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGKNVTCPELMGKCSV 483
Query: 489 VRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYR 548
VRELHVYGTAVPVHGR+ADKLQHQGYGTLLMEEAERIA EHRS K+ VISGVGTRHYYR
Sbjct: 484 VRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARREHRSNKIGVISGVGTRHYYR 543
Query: 549 KLGYELEGPYMVKYL 563
KLGYELEGPYMVK+L
Sbjct: 544 KLGYELEGPYMVKHL 558
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 564 | ||||||
| TAIR|locus:2177477 | 565 | ELO3 "ELONGATA 3" [Arabidopsis | 0.998 | 0.996 | 0.898 | 6.5e-280 | |
| UNIPROTKB|Q5ZHS1 | 546 | ELP3 "Elongator complex protei | 0.925 | 0.956 | 0.762 | 2.6e-221 | |
| FB|FBgn0031604 | 552 | Elp3 "Elongator complex protei | 0.921 | 0.942 | 0.751 | 2.9e-220 | |
| UNIPROTKB|E1C2M5 | 548 | ELP3 "Elongator complex protei | 0.925 | 0.952 | 0.759 | 3.8e-220 | |
| ZFIN|ZDB-GENE-050327-35 | 548 | elp3 "elongation protein 3 hom | 0.923 | 0.950 | 0.758 | 7.9e-220 | |
| UNIPROTKB|Q2KJ61 | 547 | ELP3 "Elongator complex protei | 0.925 | 0.954 | 0.749 | 1.5e-218 | |
| UNIPROTKB|Q6NVL5 | 549 | elp3 "Elongator complex protei | 0.925 | 0.950 | 0.756 | 1.5e-218 | |
| UNIPROTKB|Q5HZM6 | 549 | elp3 "Elongator complex protei | 0.925 | 0.950 | 0.750 | 2.4e-218 | |
| RGD|2324506 | 566 | Elp3 "elongator acetyltransfer | 0.925 | 0.922 | 0.750 | 3.9e-218 | |
| UNIPROTKB|Q9H9T3 | 547 | ELP3 "Elongator complex protei | 0.925 | 0.954 | 0.749 | 5e-218 |
| TAIR|locus:2177477 ELO3 "ELONGATA 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2690 (952.0 bits), Expect = 6.5e-280, P = 6.5e-280
Identities = 507/564 (89%), Positives = 531/564 (94%)
Query: 1 MATAVLPQ-DAKKLPRPGRGGFQAHGLTXXXXXXXXXXXXXNSMVELSRKNETVDLNAIK 59
MATAV+ + KK PRPG+GG+Q GLT ++M+E S +NE VDLNAIK
Sbjct: 1 MATAVVMNGELKKQPRPGKGGYQGRGLTEEEARVRAISEIVSTMIERSHRNENVDLNAIK 60
Query: 60 SAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHI 119
+AACRKYGLARAPKLVEMIAALP+++RE LLPKLRAKPVRTASGIAVVAVMSKPHRCPHI
Sbjct: 61 TAACRKYGLARAPKLVEMIAALPDSERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHI 120
Query: 120 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV 179
ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV
Sbjct: 121 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV 180
Query: 180 DKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239
DKVEFILMGGTFMSLPA+YRD+FIRNLHDALSGHTSANVEEAV YSEH ATKCIGMTIET
Sbjct: 181 DKVEFILMGGTFMSLPAEYRDFFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIET 240
Query: 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV 299
RPDYCLGPHLRQML YGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV
Sbjct: 241 RPDYCLGPHLRQMLIYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV 300
Query: 300 AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPP 359
AHMMPDLPNVGVERD+ESF+EFFESP FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPP
Sbjct: 301 AHMMPDLPNVGVERDMESFKEFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPP 360
Query: 360 EQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419
EQLVDIVARIL+MVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR
Sbjct: 361 EQLVDIVARILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 420
Query: 420 TREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTC 479
TREAGIQDIHH+IKPE+VELVRRDY ANEGWETFLSYEDTRQDILVGLLRLRKCG+NVTC
Sbjct: 421 TREAGIQDIHHKIKPEQVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGKNVTC 480
Query: 480 PELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS 539
PELMGKCS+VRELHVYGTAVPVHGR+ADKLQHQGYGTLLMEEAERIA EHRS K+ VIS
Sbjct: 481 PELMGKCSVVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARREHRSNKIGVIS 540
Query: 540 GVGTRHYYRKLGYELEGPYMVKYL 563
GVGTRHYYRKLGYELEGPYMVK+L
Sbjct: 541 GVGTRHYYRKLGYELEGPYMVKHL 564
|
|
| UNIPROTKB|Q5ZHS1 ELP3 "Elongator complex protein 3" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2137 (757.3 bits), Expect = 2.6e-221, P = 2.6e-221
Identities = 398/522 (76%), Positives = 450/522 (86%)
Query: 43 MVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTAS 102
++E + + V+LN +K+ KYGL+ P+LV++IAA+P R+AL+PKL+AKP+RTAS
Sbjct: 25 LIEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAAVPPQHRKALVPKLKAKPIRTAS 84
Query: 103 GIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPY 162
GIAVVAVM KPHRCPHI TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARY+PY
Sbjct: 85 GIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPY 144
Query: 163 VQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV 222
+Q R R++QLK+LGHSVDKVEFI+MGGTFM+LP DYRDYFIRNLHDALSGHTS NV EAV
Sbjct: 145 LQTRHRVEQLKQLGHSVDKVEFIVMGGTFMALPEDYRDYFIRNLHDALSGHTSNNVAEAV 204
Query: 223 TYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVA 282
YSE TKC+G+TIETRPDYCL HL MLSYGCTRLEIGVQS YEDVARDTNRGHTV
Sbjct: 205 KYSERSLTKCVGITIETRPDYCLKRHLSDMLSYGCTRLEIGVQSVYEDVARDTNRGHTVK 264
Query: 283 AVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRG 342
AV + F LAKDAGFKVVAHMMPDLPN+G+ERD + F EFFE+P FR DG+K+YPTLVIRG
Sbjct: 265 AVCESFHLAKDAGFKVVAHMMPDLPNMGLERDTDQFVEFFENPAFRPDGMKLYPTLVIRG 324
Query: 343 TGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRE 402
TGLYELWKTGRY++YPP LVD+VARILA+VPPWTRVYRVQRDIPMPLV+SGVE GNLRE
Sbjct: 325 TGLYELWKTGRYKSYPPSTLVDLVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRE 384
Query: 403 LALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQD 462
LALARM DLG +CRDVRTRE GIQ+IHH+++P ++EL+RRDYVAN GWETFLSYED QD
Sbjct: 385 LALARMKDLGTQCRDVRTREVGIQEIHHKVRPYQIELIRRDYVANGGWETFLSYEDPEQD 444
Query: 463 ILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEA 522
ILVGLLRLRKC PEL G SIVRELHVYG+ VPV R+ K QHQG+G LLMEEA
Sbjct: 445 ILVGLLRLRKCSEESFRPELKGGVSIVRELHVYGSVVPVSSRDPSKFQHQGFGMLLMEEA 504
Query: 523 ERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
ERIA EH S K+AVISGVGTR+YYRK+GYELEGPYMVK L+
Sbjct: 505 ERIAKEEHGSWKIAVISGVGTRNYYRKIGYELEGPYMVKRLQ 546
|
|
| FB|FBgn0031604 Elp3 "Elongator complex protein 3" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2109 (747.5 bits), Expect = 2.9e-220, Sum P(2) = 2.9e-220
Identities = 393/523 (75%), Positives = 450/523 (86%)
Query: 45 ELSRKNET---VDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTA 101
EL + +E V+LN +KS KYGL +P+LV++IAA+P+ ++ LLPKLRAKP+RTA
Sbjct: 27 ELLKAHEAKKDVNLNRMKSLVASKYGLDSSPRLVDIIAAVPQDAKKILLPKLRAKPIRTA 86
Query: 102 SGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNP 161
SGIAVVAVM KPHRCPHI TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIR+RY+P
Sbjct: 87 SGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRSRYDP 146
Query: 162 YVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEA 221
++Q R R++QLK+LGHSVDKVEFI+MGGTFM LP +YRDYFIRNLHDALSGH+SANV EA
Sbjct: 147 FLQTRHRVEQLKQLGHSVDKVEFIVMGGTFMCLPEEYRDYFIRNLHDALSGHSSANVAEA 206
Query: 222 VTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTV 281
V YSE TKCIG+TIETRPDYCL H+ MLSYGCTRLEIGVQS YEDVARDTNRGHTV
Sbjct: 207 VRYSEKSRTKCIGITIETRPDYCLKRHISDMLSYGCTRLEIGVQSVYEDVARDTNRGHTV 266
Query: 282 AAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIR 341
AV + F L KDAG+K+V HMMPDLPNV ERD+E F E+FE+P FR+DGLKIYPTLVIR
Sbjct: 267 RAVCESFQLGKDAGYKIVTHMMPDLPNVDFERDIEQFIEYFENPAFRSDGLKIYPTLVIR 326
Query: 342 GTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLR 401
GTGLYELWKTGRY++YPP LVD+VA+ILA+VPPWTRVYRVQRDIPMPLV+SGVE GNLR
Sbjct: 327 GTGLYELWKTGRYKSYPPSMLVDLVAKILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLR 386
Query: 402 ELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQ 461
ELALARM DLG CRDVRTRE GIQ+IH++++P E+EL+RRDYVAN GWETFLSYED Q
Sbjct: 387 ELALARMKDLGTTCRDVRTREVGIQEIHNKVRPYEIELIRRDYVANGGWETFLSYEDPEQ 446
Query: 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEE 521
DILVGLLRLRKC + PEL G+CSIVRELHVYG+ VPV+ R+ K QHQG+G LLMEE
Sbjct: 447 DILVGLLRLRKCSPDTFRPELKGECSIVRELHVYGSVVPVNARDPTKFQHQGFGMLLMEE 506
Query: 522 AERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
AERIA EH S K+AVISGVGTR+YYRK+GY+L+GPYM K +E
Sbjct: 507 AERIAREEHGSTKLAVISGVGTRNYYRKMGYQLDGPYMSKSIE 549
|
|
| UNIPROTKB|E1C2M5 ELP3 "Elongator complex protein 3" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2126 (753.4 bits), Expect = 3.8e-220, P = 3.8e-220
Identities = 398/524 (75%), Positives = 450/524 (85%)
Query: 43 MVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTAS 102
++E + + V+LN +K+ KYGL+ P+LV++IAA+P R+AL+PKL+AKP+RTAS
Sbjct: 25 LIEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAAVPPQHRKALVPKLKAKPIRTAS 84
Query: 103 GIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPY 162
GIAVVAVM KPHRCPHI TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARY+PY
Sbjct: 85 GIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPY 144
Query: 163 VQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV 222
+Q R R++QLK+LGHSVDKVEFI+MGGTFM+LP DYRDYFIRNLHDALSGHTS NV EAV
Sbjct: 145 LQTRHRVEQLKQLGHSVDKVEFIVMGGTFMALPEDYRDYFIRNLHDALSGHTSNNVAEAV 204
Query: 223 TYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVA 282
YSE TKC+G+TIETRPDYCL HL MLSYGCTRLEIGVQS YEDVARDTNRGHTV
Sbjct: 205 KYSERSLTKCVGITIETRPDYCLKRHLSDMLSYGCTRLEIGVQSVYEDVARDTNRGHTVK 264
Query: 283 AVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRG 342
AV + F LAKDAGFKVVAHMMPDLPN+G+ERD + F EFFE+P FR DG+K+YPTLVIRG
Sbjct: 265 AVCESFHLAKDAGFKVVAHMMPDLPNMGLERDTDQFVEFFENPAFRPDGMKLYPTLVIRG 324
Query: 343 TGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQR--DIPMPLVTSGVEKGNL 400
TGLYELWKTGRY++YPP LVD+VARILA+VPPWTRVYRVQR DIPMPLV+SGVE GNL
Sbjct: 325 TGLYELWKTGRYKSYPPSTLVDLVARILALVPPWTRVYRVQRHRDIPMPLVSSGVEHGNL 384
Query: 401 RELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTR 460
RELALARM DLG +CRDVRTRE GIQ+IHH+++P ++EL+RRDYVAN GWETFLSYED
Sbjct: 385 RELALARMKDLGTQCRDVRTREVGIQEIHHKVRPYQIELIRRDYVANGGWETFLSYEDPE 444
Query: 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLME 520
QDILVGLLRLRKC PEL G SIVRELHVYG+ VPV R+ K QHQG+G LLME
Sbjct: 445 QDILVGLLRLRKCSEESFRPELKGGVSIVRELHVYGSVVPVSSRDPSKFQHQGFGMLLME 504
Query: 521 EAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
EAERIA EH S K+AVISGVGTR+YYRK+GYELEGPYMVK L+
Sbjct: 505 EAERIAKEEHGSWKIAVISGVGTRNYYRKIGYELEGPYMVKRLQ 548
|
|
| ZFIN|ZDB-GENE-050327-35 elp3 "elongation protein 3 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 2123 (752.4 bits), Expect = 7.9e-220, P = 7.9e-220
Identities = 395/521 (75%), Positives = 448/521 (85%)
Query: 43 MVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTAS 102
+VE + + ++LN +K+ KYGL+ P+LV++IAA+P R AL+PKL+AKP+RTAS
Sbjct: 27 LVEAHEEGKDINLNKVKTKTSAKYGLSAQPRLVDIIAAVPPHYRRALVPKLKAKPIRTAS 86
Query: 103 GIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPY 162
GIAVVAVM KPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARY+PY
Sbjct: 87 GIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPY 146
Query: 163 VQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV 222
+Q R R++QLK+LGHSVDKVEFI+MGGTFM+LP +YRDYFIRNLHDALSGHTS NV EAV
Sbjct: 147 LQTRHRVEQLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNVTEAV 206
Query: 223 TYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVA 282
YSE TKC+G+TIETRPDYCL HL ML YGCTRLEIGVQS YEDVARDTNRGHTV
Sbjct: 207 RYSERSNTKCVGITIETRPDYCLKRHLSDMLGYGCTRLEIGVQSVYEDVARDTNRGHTVR 266
Query: 283 AVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRG 342
AV + F LAKDAGFKVVAHMMPDLPNVG+ERD+E F EFFE+P FR DGLK+YPTLVIRG
Sbjct: 267 AVCESFHLAKDAGFKVVAHMMPDLPNVGMERDVEQFIEFFENPAFRPDGLKLYPTLVIRG 326
Query: 343 TGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRE 402
TGLYELWKTGRY++Y P LVD+VARILA+VPPWTRVYRVQRDIPMPLV+SGVE GNLRE
Sbjct: 327 TGLYELWKTGRYKSYSPSALVDLVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRE 386
Query: 403 LALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQD 462
LALARM D+G +CRDVRTRE GIQ+IHH+++P +VEL+RRDYVAN GWETFLSYED QD
Sbjct: 387 LALARMKDMGTECRDVRTREVGIQEIHHKVRPYQVELIRRDYVANGGWETFLSYEDPEQD 446
Query: 463 ILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEA 522
IL+GLLRLR+C PEL G SIVRELHVYG+ VPV R+ K QHQG+G +LMEEA
Sbjct: 447 ILIGLLRLRRCSPQSFRPELKGGVSIVRELHVYGSVVPVSSRDPSKFQHQGFGMMLMEEA 506
Query: 523 ERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 563
ERIA EH S K+AVISGVGTR+YYRK+GYELEGPYMVK L
Sbjct: 507 ERIARDEHGSSKLAVISGVGTRNYYRKMGYELEGPYMVKNL 547
|
|
| UNIPROTKB|Q2KJ61 ELP3 "Elongator complex protein 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2111 (748.2 bits), Expect = 1.5e-218, P = 1.5e-218
Identities = 391/522 (74%), Positives = 449/522 (86%)
Query: 43 MVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTAS 102
++E + + +DLN +K+ KYGL+ P+LV++IAA+P R+ L+PKL+AKP+RTAS
Sbjct: 26 LIEAHEQGKDIDLNKVKTRTAAKYGLSAQPRLVDIIAAVPPQYRKVLVPKLKAKPIRTAS 85
Query: 103 GIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPY 162
GIAVVAVM KPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARY+PY
Sbjct: 86 GIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPY 145
Query: 163 VQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV 222
+Q R RI+QLK+LGHSVDKVEFI+MGGTFM+LP +YRDYFIRNLHDALSGHTS N+ EAV
Sbjct: 146 LQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAV 205
Query: 223 TYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVA 282
YSE TKCIG+TIETRPDYC+ HL ML+YGCTRLEIGVQS YEDVARDTNRGHTV
Sbjct: 206 KYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVK 265
Query: 283 AVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRG 342
AV + F LAKD+GFKVVAHMMPDLPNVG+ERD+E F EFFE+P FR DGLK+YPTLVIRG
Sbjct: 266 AVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRG 325
Query: 343 TGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRE 402
TGLYELWK+GRY++Y P L+++VARILA+VPPWTRVYRVQRDIPMPLV+SGVE GNLRE
Sbjct: 326 TGLYELWKSGRYKSYSPSDLIELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRE 385
Query: 403 LALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQD 462
LA ARM DLG++CRDVRTRE GIQ+IHH+++P +VELVRRDYVAN GWETFLSYED QD
Sbjct: 386 LAFARMKDLGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQD 445
Query: 463 ILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEA 522
IL+GLLRLRKC EL+G SIVRELHVYG+ VPV R+ K QHQG+G LLMEEA
Sbjct: 446 ILIGLLRLRKCSEETFRFELVGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEA 505
Query: 523 ERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
ERIA EH S K+AVISGVGTR+YYRK+GY L+GPYMVK LE
Sbjct: 506 ERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGPYMVKTLE 547
|
|
| UNIPROTKB|Q6NVL5 elp3 "Elongator complex protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 2111 (748.2 bits), Expect = 1.5e-218, P = 1.5e-218
Identities = 395/522 (75%), Positives = 447/522 (85%)
Query: 43 MVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTAS 102
+VE + + V+LN +K+ KYGL+ P+LV++IAA+P R+ L+PKL+AKP+RTAS
Sbjct: 28 LVEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAAVPPQYRKILVPKLKAKPIRTAS 87
Query: 103 GIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPY 162
GIAVVAVM KPHRCPHI TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARY+PY
Sbjct: 88 GIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPY 147
Query: 163 VQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV 222
+Q R R++QLK+LGHSVDKVEFI+MGGTFM+L DYRD+FIRNLHDALSGHTS +V EAV
Sbjct: 148 LQTRHRVEQLKQLGHSVDKVEFIVMGGTFMALSEDYRDFFIRNLHDALSGHTSNSVSEAV 207
Query: 223 TYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVA 282
YSE TKC+G+TIETRPDYCL HL MLSYGCTRLEIGVQS YEDVARDTNRGHTV
Sbjct: 208 RYSERSNTKCVGITIETRPDYCLKRHLSDMLSYGCTRLEIGVQSVYEDVARDTNRGHTVK 267
Query: 283 AVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRG 342
AV + F +AKDAGFKVV+HMMPDLPNVG+ERD E F EFFE+P FR DG+K+YPTLVIRG
Sbjct: 268 AVCESFHMAKDAGFKVVSHMMPDLPNVGLERDTEQFIEFFENPAFRPDGMKLYPTLVIRG 327
Query: 343 TGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRE 402
TGLYELWKTGRYR+Y P LVD+VARILA+VPPWTRVYRVQRDIPMPLV+SGVE GNLRE
Sbjct: 328 TGLYELWKTGRYRSYSPSTLVDLVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRE 387
Query: 403 LALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQD 462
LALARM DLG +CRDVRTRE GIQ+IHH+++P +VEL+RRDYVAN GWETFLSYED QD
Sbjct: 388 LALARMKDLGTECRDVRTREVGIQEIHHKVRPYQVELIRRDYVANGGWETFLSYEDPEQD 447
Query: 463 ILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEA 522
IL+GLLRLRKC PEL G SIVRELHVYG+ VP+ R+ K QHQG+G LLMEEA
Sbjct: 448 ILIGLLRLRKCSEQSFRPELKGGVSIVRELHVYGSVVPISSRDPSKFQHQGFGMLLMEEA 507
Query: 523 ERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
ERIA EH S K+AVISGVGTR+YYRKLGYELEGPYMVK L+
Sbjct: 508 ERIAREEHGSCKIAVISGVGTRNYYRKLGYELEGPYMVKKLD 549
|
|
| UNIPROTKB|Q5HZM6 elp3 "Elongator complex protein 3" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 2109 (747.5 bits), Expect = 2.4e-218, P = 2.4e-218
Identities = 392/522 (75%), Positives = 448/522 (85%)
Query: 43 MVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTAS 102
+VE + + V+LN +K+ KYGL+ P+LV++IAA+P R+ L+PKL+AKP+RTAS
Sbjct: 28 LVEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAAVPPQYRKILVPKLKAKPIRTAS 87
Query: 103 GIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPY 162
GIAVVAVM KPHRCPHI TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARY+PY
Sbjct: 88 GIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPY 147
Query: 163 VQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV 222
+Q R R++QLK+LGH+VDKVEFI+MGGTFM+LP DYRD+FIRNLHDALSGHTS +V EAV
Sbjct: 148 LQTRHRVEQLKQLGHNVDKVEFIVMGGTFMALPEDYRDFFIRNLHDALSGHTSNSVSEAV 207
Query: 223 TYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVA 282
YSE TKC+G+TIETRPDYCL HL ML YGCTRLEIGVQS YEDVARDTNRGHTV
Sbjct: 208 RYSERSNTKCVGITIETRPDYCLKRHLSDMLCYGCTRLEIGVQSVYEDVARDTNRGHTVK 267
Query: 283 AVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRG 342
AV + F L+KDAGFKVV+HMMPDLPN+G+ERD+E F EFFE+P FR DG+K+YPTLVIRG
Sbjct: 268 AVCESFHLSKDAGFKVVSHMMPDLPNMGLERDIEQFIEFFENPAFRPDGMKLYPTLVIRG 327
Query: 343 TGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRE 402
TGLYELWKTGRYR+Y P LVD+VARILA+VPPWTRVYRVQRDIPMPLV+SGVE GNLRE
Sbjct: 328 TGLYELWKTGRYRSYSPSTLVDLVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRE 387
Query: 403 LALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQD 462
LALARM DLG +CRDVRTRE GIQ+IHH+++P +VEL+RRDYVAN GWETFLSYED QD
Sbjct: 388 LALARMKDLGTECRDVRTREVGIQEIHHKVRPYQVELIRRDYVANGGWETFLSYEDPEQD 447
Query: 463 ILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEA 522
IL+GLLRLRKC PEL G SIVRELHVYG+ VP+ R+ K QHQG+G LLMEEA
Sbjct: 448 ILIGLLRLRKCSEESFRPELKGGVSIVRELHVYGSVVPISSRDPSKFQHQGFGMLLMEEA 507
Query: 523 ERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
ERIA EH S K+AVISGVGTR+YYRK+GYELEGPYMVK L+
Sbjct: 508 ERIARDEHGSWKIAVISGVGTRNYYRKIGYELEGPYMVKRLD 549
|
|
| RGD|2324506 Elp3 "elongator acetyltransferase complex subunit 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2107 (746.8 bits), Expect = 3.9e-218, P = 3.9e-218
Identities = 392/522 (75%), Positives = 449/522 (86%)
Query: 43 MVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTAS 102
+VE + + VDLN +K+ KYGL+ P+LV++IAA+P R+ L+PKL+AKP+RTAS
Sbjct: 45 LVEAHEQGKDVDLNKLKTKTASKYGLSSQPRLVDIIAAVPPHYRKILIPKLKAKPIRTAS 104
Query: 103 GIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPY 162
GIAVVAVM KPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARY+PY
Sbjct: 105 GIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPY 164
Query: 163 VQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV 222
+Q R RI+QLK+LGHSVDKVEFI+MGGTFM+LP +YRDYFIRNLHDALSGHTS N+ EA+
Sbjct: 165 LQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAI 224
Query: 223 TYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVA 282
YSE TKCIG+TIETRPDYC+ HL ML+YGCTRLEIGVQS YEDVARDTNRGHTV
Sbjct: 225 KYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVK 284
Query: 283 AVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRG 342
AV + F LAKD+GFKVVAHMMPDLPNVG+ERD+E F EFFE+P FR DGLK+YPTLVIRG
Sbjct: 285 AVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQFIEFFENPAFRPDGLKLYPTLVIRG 344
Query: 343 TGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRE 402
TGLYELWK+GRYR+Y P L+++VARILA+VPPWTRVYRVQRDIPMPLV+SGV+ GNLRE
Sbjct: 345 TGLYELWKSGRYRSYSPSDLIELVARILALVPPWTRVYRVQRDIPMPLVSSGVDHGNLRE 404
Query: 403 LALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQD 462
LA ARM DLG++CRDVRTRE GIQ+IHH+++P +VELVRRDYVAN GWETFLSYED QD
Sbjct: 405 LAFARMKDLGIQCRDVRTREVGIQEIHHRVRPYQVELVRRDYVANGGWETFLSYEDPDQD 464
Query: 463 ILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEA 522
IL+GLLRLRKC EL G SIVRELHVYG+ VPV R+ K QHQG+G LLMEEA
Sbjct: 465 ILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEA 524
Query: 523 ERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
ERIAL EH S K+AVISGVGTR+YYRK+GY L+GPYMVK L+
Sbjct: 525 ERIALEEHGSGKIAVISGVGTRNYYRKMGYRLQGPYMVKMLK 566
|
|
| UNIPROTKB|Q9H9T3 ELP3 "Elongator complex protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2106 (746.4 bits), Expect = 5.0e-218, P = 5.0e-218
Identities = 391/522 (74%), Positives = 449/522 (86%)
Query: 43 MVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTAS 102
++E + + +DLN +K+ KYGL+ P+LV++IAA+P R+ L+PKL+AKP+RTAS
Sbjct: 26 LIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDIIAAVPPQYRKVLMPKLKAKPIRTAS 85
Query: 103 GIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPY 162
GIAVVAVM KPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARY+P+
Sbjct: 86 GIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPF 145
Query: 163 VQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAV 222
+Q R RI+QLK+LGHSVDKVEFI+MGGTFM+LP +YRDYFIRNLHDALSGHTS N+ EAV
Sbjct: 146 LQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAV 205
Query: 223 TYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVA 282
YSE TKCIG+TIETRPDYC+ HL ML+YGCTRLEIGVQS YEDVARDTNRGHTV
Sbjct: 206 KYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVK 265
Query: 283 AVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRG 342
AV + F LAKD+GFKVVAHMMPDLPNVG+ERD+E F EFFE+P FR DGLK+YPTLVIRG
Sbjct: 266 AVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRG 325
Query: 343 TGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRE 402
TGLYELWK+GRY++Y P LV++VARILA+VPPWTRVYRVQRDIPMPLV+SGVE GNLRE
Sbjct: 326 TGLYELWKSGRYKSYSPSDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRE 385
Query: 403 LALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQD 462
LALARM DLG++CRDVRTRE GIQ+IHH+++P +VELVRRDYVAN GWETFLSYED QD
Sbjct: 386 LALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQD 445
Query: 463 ILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEA 522
IL+GLLRLRKC EL G SIVRELHVYG+ VPV R+ K QHQG+G LLMEEA
Sbjct: 446 ILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEA 505
Query: 523 ERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
ERIA EH S K+AVISGVGTR+YYRK+GY L+GPYMVK L+
Sbjct: 506 ERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGPYMVKMLK 547
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q23651 | ELP3_CAEEL | 2, ., 3, ., 1, ., 4, 8 | 0.7363 | 0.9414 | 0.9707 | yes | no |
| Q5HZM6 | ELP3_XENLA | 2, ., 3, ., 1, ., 4, 8 | 0.7218 | 0.9716 | 0.9981 | N/A | no |
| Q1ZXC6 | ELP3_DICDI | 2, ., 3, ., 1, ., 4, 8 | 0.7358 | 0.9397 | 0.9481 | yes | no |
| Q02908 | ELP3_YEAST | 2, ., 3, ., 1, ., 4, 8 | 0.6802 | 0.9468 | 0.9587 | yes | no |
| Q6NVL5 | ELP3_XENTR | 2, ., 3, ., 1, ., 4, 8 | 0.7379 | 0.9539 | 0.9799 | yes | no |
| Q9CZX0 | ELP3_MOUSE | 2, ., 3, ., 1, ., 4, 8 | 0.7272 | 0.9556 | 0.9853 | yes | no |
| Q7X7L3 | ELP3_ORYSJ | 2, ., 3, ., 1, ., 4, 8 | 0.9192 | 0.9858 | 0.9703 | yes | no |
| Q9VQZ6 | ELP3_DROME | 2, ., 3, ., 1, ., 4, 8 | 0.7351 | 0.9574 | 0.9782 | yes | no |
| Q5ZHS1 | ELP3_CHICK | 2, ., 3, ., 1, ., 4, 8 | 0.7412 | 0.9663 | 0.9981 | yes | no |
| Q58536 | Y1136_METJA | No assigned EC number | 0.4258 | 0.9219 | 0.9611 | yes | no |
| Q2KJ61 | ELP3_BOVIN | 2, ., 3, ., 1, ., 4, 8 | 0.7291 | 0.9556 | 0.9853 | yes | no |
| Q93ZR1 | ELP3_ARATH | 2, ., 3, ., 1, ., 4, 8 | 0.9202 | 0.9982 | 0.9964 | yes | no |
| Q9H9T3 | ELP3_HUMAN | 2, ., 3, ., 1, ., 4, 8 | 0.7309 | 0.9556 | 0.9853 | yes | no |
| Q60LW7 | ELP3_CAEBR | 2, ., 3, ., 1, ., 4, 8 | 0.7325 | 0.9414 | 0.9689 | N/A | no |
| Q5RIC0 | ELP3_DANRE | 2, ., 3, ., 1, ., 4, 8 | 0.7416 | 0.9539 | 0.9817 | yes | no |
| O14023 | ELP3_SCHPO | 2, ., 3, ., 1, ., 4, 8 | 0.6971 | 0.9432 | 0.9779 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| HAG905 | histone acetyltransferase (563 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| grail3.0001095301 | hypothetical protein (414 aa) | • | • | 0.503 | |||||||
| gw1.V.3068.1 | hypothetical protein (353 aa) | • | • | • | 0.471 | ||||||
| grail3.0001051301 | hypothetical protein (85 aa) | • | • | 0.461 | |||||||
| estExt_Genewise1_v1.C_LG_VII2715 | hypothetical protein (380 aa) | • | 0.458 | ||||||||
| estExt_Genewise1_v1.C_LG_XIII0788 | hypothetical protein (118 aa) | • | • | 0.449 | |||||||
| estExt_fgenesh4_pm.C_1070023 | hypothetical protein (554 aa) | • | 0.440 | ||||||||
| gw1.I.4832.1 | hypothetical protein (422 aa) | • | 0.435 | ||||||||
| gw1.86.17.1 | hypothetical protein (573 aa) | • | 0.433 | ||||||||
| fgenesh4_pm.C_LG_V000540 | hypothetical protein (491 aa) | • | • | 0.415 | |||||||
| estExt_Genewise1_v1.C_LG_IV0024 | SubName- Full=Putative uncharacterized protein; (604 aa) | • | 0.408 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 564 | |||
| COG1243 | 515 | COG1243, ELP3, Histone acetyltransferase [Transcri | 0.0 | |
| TIGR01211 | 522 | TIGR01211, ELP3, histone acetyltransferase, ELP3 f | 0.0 | |
| smart00729 | 216 | smart00729, Elp3, Elongator protein 3, MiaB family | 1e-23 | |
| COG1242 | 312 | COG1242, COG1242, Predicted Fe-S oxidoreductase [G | 5e-20 | |
| TIGR01212 | 302 | TIGR01212, TIGR01212, radical SAM protein, TIGR012 | 1e-19 | |
| pfam04055 | 165 | pfam04055, Radical_SAM, Radical SAM superfamily | 9e-11 | |
| TIGR03994 | 401 | TIGR03994, rSAM_HemZ, coproporphyrinogen dehydroge | 2e-05 | |
| COG0635 | 416 | COG0635, HemN, Coproporphyrinogen III oxidase and | 3e-05 | |
| cd01335 | 204 | cd01335, Radical_SAM, Radical SAM superfamily | 3e-05 | |
| PRK05799 | 374 | PRK05799, PRK05799, coproporphyrinogen III oxidase | 4e-05 | |
| PRK08207 | 488 | PRK08207, PRK08207, coproporphyrinogen III oxidase | 1e-04 | |
| PRK08208 | 430 | PRK08208, PRK08208, coproporphyrinogen III oxidase | 2e-04 | |
| COG1244 | 358 | COG1244, COG1244, Predicted Fe-S oxidoreductase [G | 3e-04 | |
| TIGR00539 | 360 | TIGR00539, hemN_rel, putative oxygen-independent c | 3e-04 | |
| PRK08599 | 377 | PRK08599, PRK08599, coproporphyrinogen III oxidase | 4e-04 | |
| TIGR01210 | 313 | TIGR01210, TIGR01210, TIGR01210 family protein | 9e-04 | |
| PRK08446 | 350 | PRK08446, PRK08446, coproporphyrinogen III oxidase | 0.001 |
| >gnl|CDD|224164 COG1243, ELP3, Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Score = 722 bits (1865), Expect = 0.0
Identities = 273/530 (51%), Positives = 354/530 (66%), Gaps = 17/530 (3%)
Query: 36 IAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRA 95
EIV + LS + + +L +K RKYGL++ P+ +++ A P +R L LR
Sbjct: 1 CEEIVEEL--LSGEIKKKELEDLKLEVSRKYGLSKVPRNSDILNAAPPEER--LREILRR 56
Query: 96 KPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAI 155
KPVRT SG+AVVAVM+ PH CPH CV+CPGGPD + S QSYTG EP ++RAI
Sbjct: 57 KPVRTISGVAVVAVMTSPHGCPH-----GRCVFCPGGPD---KDSPQSYTGEEPAALRAI 108
Query: 156 RARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTS 215
+ RY+PY Q R+R+ QL+ +GH+ DKVE I+MGGTF +L +Y+++F++ A++
Sbjct: 109 KNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTALSLEYQEWFLKVALKAMNDF-G 167
Query: 216 ANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDT 275
++EEA +E +C+G+TIETRPDY HL QML YG TR+E+GVQS Y+DV T
Sbjct: 168 YDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLERT 227
Query: 276 NRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335
RGHTV V + L KDAGFKV H+MP LP ERDLESFRE FE P FR D LKIY
Sbjct: 228 KRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIY 287
Query: 336 PTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGV 395
PTLVI GT LYE+WK G Y+ Y E+ V+++ I + P W RV R+QRDIP L+ GV
Sbjct: 288 PTLVIEGTELYEMWKRGLYKPYTTEEAVELIVEIYRLEPKWVRVIRIQRDIPAELIVDGV 347
Query: 396 EKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKP--EEVELVRRDYVANEGWETF 453
+K NLREL RM + G+KCR +R RE GI + + + P E++ L R +Y A+ G E F
Sbjct: 348 KKSNLRELVENRMREEGIKCRCIRCREVGIVVVKNVVIPPVEQILLKREEYEASGGTEIF 407
Query: 454 LSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQG 513
LSYED + DIL+G LRLR+ E+ K +IVRELHVYG+ VP+ RE D+ QH+G
Sbjct: 408 LSYEDPKNDILIGFLRLREPSEGAHREEIDDKTAIVRELHVYGSEVPIGKRE-DEWQHRG 466
Query: 514 YGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 563
YG L+EEAERIA E ++K+ VISG+G R YYRKLGYEL+GPYM K L
Sbjct: 467 YGRELLEEAERIAREEG-AKKILVISGIGVREYYRKLGYELDGPYMSKRL 515
|
Length = 515 |
| >gnl|CDD|233314 TIGR01211, ELP3, histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Score = 711 bits (1838), Expect = 0.0
Identities = 266/516 (51%), Positives = 344/516 (66%), Gaps = 15/516 (2%)
Query: 54 DLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKP 113
DL +K RKYGL++ P E++ + P+ +++ L P LR KPVRT SG+AVVAVM+ P
Sbjct: 16 DLEDLKLEVSRKYGLSKVPSNSEILNSAPDEEKKKLEPILRKKPVRTISGVAVVAVMTSP 75
Query: 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLK 173
HRCPH C+YCPGGPDS E S QSYTGYEP +MR + Y+PY Q +R++QL+
Sbjct: 76 HRCPHGK-----CLYCPGGPDS--ENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLE 128
Query: 174 RLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSA-----NVEEAVTYSEHG 228
++GH VDKVE I+MGGTF + DY+++FI+ +A++G +EEA+ +E
Sbjct: 129 QIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETS 188
Query: 229 ATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCF 288
+C+G+TIETRPDYC H+ +ML G TR+E+GVQ+ Y D+ T RGHTV V +
Sbjct: 189 KHRCVGLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEAT 248
Query: 289 CLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYEL 348
L +DAG KVV H+MP LP ERDLE FRE FE P F+ D LKIYPTLV RGT LYEL
Sbjct: 249 RLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYEL 308
Query: 349 WKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARM 408
WK G Y+ Y E+ V+++ I M+P W R+ R+QRDIP PL+ +GV+K NLREL RM
Sbjct: 309 WKRGEYKPYTTEEAVELIVEIKRMMPKWVRIQRIQRDIPAPLIVAGVKKSNLRELVYRRM 368
Query: 409 DDLGLKCRDVRTREAGIQDIHHQIKPEE-VELVRRDYVANEGWETFLSYEDTRQDILVGL 467
+ G+ CR +R RE G Q + EE VEL+ +Y A+ G E FLSYED + DIL+G
Sbjct: 369 KEHGITCRCIRCREVGHQMVKPVQPEEENVELIVEEYAASGGTEFFLSYEDPKNDILIGF 428
Query: 468 LRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527
LRLR E+ ++VRELHVYG+ VP+ R D+ QH+GYG L+EEAERIA
Sbjct: 429 LRLRFPSEPAHRKEVDAT-ALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAA 487
Query: 528 GEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 563
E S K+ VISG+G R YYRKLGYEL+GPYM K L
Sbjct: 488 -EEGSEKILVISGIGVREYYRKLGYELDGPYMSKRL 522
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases [Transcription, DNA-dependent RNA polymerase]. Length = 522 |
| >gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 1e-23
Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 51/264 (19%)
Query: 106 VVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYV-- 163
+A+ CP C +C P+ +R+RY +
Sbjct: 1 PLALYIITRGCPRR------CTFC-----------------SFPSLRGKLRSRYLEALVR 37
Query: 164 QARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVT 223
+ ++ ++ G V V GGT L + + + + + L
Sbjct: 38 EIELLAEKGEKEGL-VGTVFIG--GGTPTLLSPEQLEELLEAIREIL------------- 81
Query: 224 YSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAA 283
G K + +TIETRPD L + G R+ +GVQS ++V + NRGHTV
Sbjct: 82 ----GLAKDVEITIETRPDTLTEELLEALKEAGVNRVSLGVQSGDDEVLKAINRGHTVED 137
Query: 284 VADCFCLAKDAGF-KVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRG 342
V + L ++AG KV ++ LP E E+ + E D + I+P G
Sbjct: 138 VLEAVELLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKE---LGPDRVSIFPLSPRPG 194
Query: 343 TGLYELWKTGRYRNYPPEQLVDIV 366
T L +++K R + E+ +++
Sbjct: 195 TPLAKMYK--RLKPPTKEERAELL 216
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 |
| >gnl|CDD|224163 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 5e-20
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 233 IGMTIETRPDYCLGPHLRQMLSYGCTR----LEIGVQSTYEDVARDTNRGHTVAAVADCF 288
+G++I TRPD CL + +L+ R +E+G+Q+ ++ + NRGH A D
Sbjct: 116 VGLSIGTRPD-CLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAV 174
Query: 289 CLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYEL 348
+ G KV H++ LP + LE+ + E + DG+K++P V++GT + ++
Sbjct: 175 KRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGV---DGIKLHPLHVVKGTPMEKM 231
Query: 349 WKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPL 390
++ GR + E+ V++V L +PP ++R+ D P
Sbjct: 232 YEKGRLKFLSLEEYVELVCDQLEHLPPEVVIHRITGDAPRDT 273
|
Length = 312 |
| >gnl|CDD|130279 TIGR01212, TIGR01212, radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 45/181 (24%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 219 EEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTR-----LEIGVQSTYEDVAR 273
E+A++Y + +G+++ TRPD C+ + +L+ R +E+G+Q+ ++ +
Sbjct: 101 EQALSYDD-----VVGLSVGTRPD-CVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLK 154
Query: 274 DTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLK 333
NRGH A D A+ G KV +H++ LP E +E+ + + DG+K
Sbjct: 155 KINRGHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLDV---DGIK 211
Query: 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTS 393
I+P V++GT + ++++ G + E+ + + L +PP ++R+ D P + +
Sbjct: 212 IHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHRISGDAPRETLIA 271
Query: 394 G 394
Sbjct: 272 P 272
|
This family has a cluster of conserved Cys residues suggestive of Fe-S cluster binding. Members belong to the radical-SAM family of putative This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain [Unknown function, Enzymes of unknown specificity]. Length = 302 |
| >gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 9e-11
Identities = 41/170 (24%), Positives = 60/170 (35%), Gaps = 21/170 (12%)
Query: 153 RAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSG 212
+IRAR + I + + + IL GG + LP G
Sbjct: 17 PSIRARGKGRELSPEEILEEAKELARLGVEVVILTGGEPLLLPDLVELLERLLKLREGEG 76
Query: 213 HTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272
I +T+ET L ++ G R+ I +QS ++V
Sbjct: 77 --------------------IRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVL 116
Query: 273 RDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFF 322
+ NRGHT V + L ++AG VV + LP E DLE E
Sbjct: 117 KIINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDE-DLEETLELL 165
|
Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 |
| >gnl|CDD|234435 TIGR03994, rSAM_HemZ, coproporphyrinogen dehydrogenase HemZ | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 45/186 (24%)
Query: 116 CPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRL 175
CP T C+YC S+T Y + + R + Y+ A + +L+ +
Sbjct: 94 CP---TR---CLYC-------------SFTSY---PIGKWKKRVDEYLDALCK--ELEAV 129
Query: 176 GHSVD--KVEFILMGG-TFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKC 232
+ K++ + +GG T +L A+ + + + + +++ E
Sbjct: 130 AKILKGLKLDTVYIGGGTPTTLSAEQLERLLGKIEENFDL---SHLRE------------ 174
Query: 233 IGMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLA 291
T+E RPD L + +G TR+ I Q+ + R HTV + + F LA
Sbjct: 175 --FTVEAGRPDSITAEKLEVLKRHGVTRISINPQTMNDKTLDLIGRRHTVEDIKEAFALA 232
Query: 292 KDAGFK 297
++AGF
Sbjct: 233 REAGFD 238
|
Members of this radical SAM protein family are HemZ, a protein involved in coproporphyrinogen III decarboxylation. Alternative names for this enzyme (EC 1.3.99.22) include coproporphyrinogen dehydrogenase and oxygen-independent coproporphyrinogen III oxidase. The family is related to, but distinct from HemN, and in Bacillus subtilis was shown to be connected to peroxide stress and catalase formation [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 401 |
| >gnl|CDD|223708 COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 7/133 (5%)
Query: 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA 294
+TIE P + + G R+ +GVQS ++V + R H + LA+ A
Sbjct: 126 ITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKA 185
Query: 295 GFK-VVAHMMPDLPNVGVERDLESFREFFESPL-FRADGLKIYPTLVIRGTGLYELWKTG 352
GF + ++ LP + LES +E E L D L +Y + GT + G
Sbjct: 186 GFTSINIDLIYGLPG----QTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKG 241
Query: 353 RYRNYPPEQLVDI 365
+ ++ D+
Sbjct: 242 KALP-DEDEKADM 253
|
Length = 416 |
| >gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-05
Identities = 35/249 (14%), Positives = 60/249 (24%), Gaps = 52/249 (20%)
Query: 113 PHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQL 172
C C +C + I +
Sbjct: 4 TRGCNLN------CGFCSNPASKGRGPESPPE---------------------IEEILDI 36
Query: 173 KRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKC 232
IL GG + P +R L L G
Sbjct: 37 VLEAKERGVEVVILTGGEPLLYP--ELAELLRRLKKELPGFEI----------------- 77
Query: 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTN-RGHTVAAVADCFCLA 291
+IET L+++ G + + + S E+VA G + +
Sbjct: 78 ---SIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKEL 134
Query: 292 KDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351
++AG + ++ L + E DLE + D + ++ L GT L
Sbjct: 135 REAGLGLSTTLLVGLGDEDEEDDLEELE--LLAEFRSPDRVSLFRLLPEEGTPLELAAPV 192
Query: 352 GRYRNYPPE 360
Sbjct: 193 VPAEKLLRL 201
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin. Length = 204 |
| >gnl|CDD|180263 PRK05799, PRK05799, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 45/246 (18%)
Query: 118 HIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGH 177
HI C+YC DF SY+G E M Y++A S+ +
Sbjct: 9 HIPFCKQKCLYC------DF----PSYSGKEDLMM--------EYIKALSKEIRNSTKNK 50
Query: 178 SVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSG-HTSANVEEAVTYSEHGATKCIGMT 236
+ + FI GGT L + + L + + + ++E T
Sbjct: 51 KIKSI-FI-GGGTPTYLSLEA----LEILKETIKKLNKKEDLE---------------FT 89
Query: 237 IETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGF 296
+E P L+ + S G RL IG+Q+ + + R HT + + LA+ GF
Sbjct: 90 VEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGF 149
Query: 297 K-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYR 355
+ +M LPN +E E+ + E + + Y ++ GT Y L++ G+
Sbjct: 150 NNINVDLMFGLPNQTLEDWKETLEKVVE---LNPEHISCYSLIIEEGTPFYNLYENGKL- 205
Query: 356 NYPPEQ 361
P E+
Sbjct: 206 KLPDEE 211
|
Length = 374 |
| >gnl|CDD|236187 PRK08207, PRK08207, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 53/207 (25%)
Query: 116 CPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSR-IDQ--- 171
CP T C+YC S+ Y ++ + PY++A I++
Sbjct: 173 CP---TR---CLYC-------------SFPSYP---IKGYKGLVEPYLEALHYEIEEIGK 210
Query: 172 -LKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGAT 230
LK G + + F GGT SL A+ + + +++ NV+E
Sbjct: 211 YLKEKGLKITTIYF--GGGTPTSLTAEELERLLEEIYENFPDVK--NVKE---------- 256
Query: 231 KCIGMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFC 289
T+E RPD L + YG R+ I Q+ ++ + R HTV + + F
Sbjct: 257 ----FTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFH 312
Query: 290 LAKDAGFKVVAHMMPD----LPNVGVE 312
LA++ GF + +M D LP G+E
Sbjct: 313 LAREMGFDNI-NM--DLIIGLPGEGLE 336
|
Length = 488 |
| >gnl|CDD|181292 PRK08208, PRK08208, coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 37/186 (19%)
Query: 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAK 292
I ++ET P L + + G RL IGVQS ++ +R A V +
Sbjct: 128 IPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIR 187
Query: 293 DAGFKVVAHMMPDLPNV----GVER-DLESFREFFESPL-FRADGLKIYPTLVIRGTGLY 346
AGF P L N+ G+ S+ E + L +R + L +YP V TGL
Sbjct: 188 AAGF-------PIL-NIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLG 239
Query: 347 ELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALA 406
R R + ++L +YR+ RD+ L+ +G + ++R
Sbjct: 240 R-----RARAWDDQRL---------------SLYRLARDL---LLEAGYTQTSMRMFRRN 276
Query: 407 RMDDLG 412
D G
Sbjct: 277 DAPDKG 282
|
Length = 430 |
| >gnl|CDD|224165 COG1244, COG1244, Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 29/182 (15%)
Query: 185 ILMGGTF---MSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRP 241
I G+F +P + R Y + + + + NV+E V +E+RP
Sbjct: 106 IFTSGSFLDPEEVPREARRYILERISE------NDNVKEVV--------------VESRP 145
Query: 242 DYCLGPHLRQMLSYGC---TRLEIGVQSTYEDVARDT-NRGHTVAAVADCFCLAKDAGFK 297
++ L ++ + IG+++ + + D+ N+G T + ++ G K
Sbjct: 146 EFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAK 205
Query: 298 VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNY 357
V +++ P + + +E + D + I PT V +GT + +LW+ G YR
Sbjct: 206 VKTYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEKLWRRGLYR-- 263
Query: 358 PP 359
PP
Sbjct: 264 PP 265
|
Length = 358 |
| >gnl|CDD|129630 TIGR00539, hemN_rel, putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 51/252 (20%), Positives = 81/252 (32%), Gaps = 48/252 (19%)
Query: 118 HIATTGNICVYCPGGPDSDF-EYSTQSYTGYEPTSMRAIRARYNPYVQA--RSRIDQLKR 174
HI N C YC DF Y +S E Y QA + L +
Sbjct: 6 HIPFCENKCGYC------DFNSYENKSGPKEE-------------YTQALCQDLKHALSQ 46
Query: 175 LGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIG 234
+ FI GGT +L + + +++ S S + E
Sbjct: 47 TDQEPLESIFI-GGGTPNTLSVEAFERLFESIYQHAS--LSDDCE--------------- 88
Query: 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA 294
+T E P+ + + G RL +GVQS +D R H+ +A A +
Sbjct: 89 ITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKS 148
Query: 295 GFKVVA-HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGR 353
G + ++ +M LP + E + E P + L Y V T + K
Sbjct: 149 GIENISLDLMYGLPLQTLNSLKEELKLAKELP---INHLSAYALSVEPNTNFEKNAK--- 202
Query: 354 YRNYPPEQLVDI 365
+ +
Sbjct: 203 -KLPDDDSCAHF 213
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 360 |
| >gnl|CDD|236309 PRK08599, PRK08599, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 26/178 (14%)
Query: 188 GGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGP 247
GGT +L A+ + + +H L + +EE T E P
Sbjct: 59 GGTPTALSAEQLERLLTAIHRNL---PLSGLEE--------------FTFEANPGDLTKE 101
Query: 248 HLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA-HMMPDL 306
L+ + G R+ +GVQ+ +++ + R H V + AK AGF ++ ++ L
Sbjct: 102 KLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYAL 161
Query: 307 PNVGVERDLESFREFFESPL--FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQL 362
P +E ES + + + A L + P T Y L + G+ R P E L
Sbjct: 162 PGQTIEDFKESLAKALALDIPHYSAYSLILEPK-----TVFYNLMRKGKLR-LPGEDL 213
|
Length = 377 |
| >gnl|CDD|233313 TIGR01210, TIGR01210, TIGR01210 family protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 9e-04
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 237 IETRPDYCLGPHLRQMLSYGC-TRLEIGVQSTYEDVARDT-NRGHTVAAVADCFCLAKDA 294
+E+RP++ L ++ G + +G+++ + + + N+G T LA+
Sbjct: 108 VESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKY 167
Query: 295 GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRY 354
G V A+++ P + + + + D + I PT V +GT + LW G Y
Sbjct: 168 GAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVTDTVSINPTNVQKGTLVEFLWNRGLY 227
Query: 355 RNYPP 359
R PP
Sbjct: 228 R--PP 230
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes [Hypothetical proteins, Conserved]. Length = 313 |
| >gnl|CDD|181428 PRK08446, PRK08446, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 46/185 (24%)
Query: 118 HIATTGNICVYCPGGPDSDFEYSTQSYT---GYEPTSMRAIRARYNPYVQARSRIDQLKR 174
HI + C YC + SY + M+A+ + + ++Q
Sbjct: 6 HIPFCESKCGYC----------AFNSYENKHDLKKEYMQAL------CLDLKFELEQFT- 48
Query: 175 LGHSVDKVEFILMGG-TFMSLPAD-YRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKC 232
+K+E + +GG T ++ A Y F +S + S + E
Sbjct: 49 ----DEKIESVFIGGGTPSTVSAKFYEPIFEI-----ISPYLSKDCE------------- 86
Query: 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAK 292
+T E P+ L+ M + G R+ GVQS ED + R H+ + AK
Sbjct: 87 --ITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAK 144
Query: 293 DAGFK 297
AGF+
Sbjct: 145 KAGFE 149
|
Length = 350 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 564 | |||
| KOG2535 | 554 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Ch | 100.0 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 100.0 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 100.0 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 100.0 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 100.0 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 100.0 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 100.0 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 100.0 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 100.0 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 100.0 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| PRK08629 | 433 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
| TIGR01210 | 313 | conserved hypothetical protein TIGR01210. This fam | 99.95 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 99.91 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 99.91 | |
| TIGR01579 | 414 | MiaB-like-C MiaB-like tRNA modifying enzyme. This | 99.9 | |
| PRK14329 | 467 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.9 | |
| PRK14334 | 440 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK14340 | 445 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK07094 | 323 | biotin synthase; Provisional | 99.89 | |
| PRK14327 | 509 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK14331 | 437 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| PRK14332 | 449 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| PRK14333 | 448 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| PRK14330 | 434 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| PRK14326 | 502 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| PRK14325 | 444 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| PRK14335 | 455 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| PRK14336 | 418 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| TIGR00089 | 429 | RNA modification enzyme, MiaB family. This subfami | 99.87 | |
| PRK14339 | 420 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| PRK14338 | 459 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| PRK14328 | 439 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| TIGR01574 | 438 | miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 | 99.87 | |
| TIGR01125 | 430 | MiaB-like tRNA modifying enzyme YliG, TIGR01125. T | 99.85 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 99.85 | |
| PRK14337 | 446 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.85 | |
| TIGR01578 | 420 | MiaB-like-B MiaB-like tRNA modifying enzyme, archa | 99.83 | |
| PRK06256 | 336 | biotin synthase; Validated | 99.83 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 99.82 | |
| COG0621 | 437 | MiaB 2-methylthioadenine synthetase [Translation, | 99.79 | |
| PRK14862 | 440 | rimO ribosomal protein S12 methylthiotransferase; | 99.79 | |
| COG1244 | 358 | Predicted Fe-S oxidoreductase [General function pr | 99.76 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 99.75 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 99.75 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 99.74 | |
| PRK08508 | 279 | biotin synthase; Provisional | 99.71 | |
| PLN02389 | 379 | biotin synthase | 99.7 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 99.7 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 99.7 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 99.69 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 99.69 | |
| PRK15108 | 345 | biotin synthase; Provisional | 99.68 | |
| COG1032 | 490 | Fe-S oxidoreductase [Energy production and convers | 99.66 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 99.66 | |
| PRK09613 | 469 | thiH thiamine biosynthesis protein ThiH; Reviewed | 99.65 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 99.64 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 99.64 | |
| PRK06267 | 350 | hypothetical protein; Provisional | 99.64 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 99.62 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 99.6 | |
| TIGR00510 | 302 | lipA lipoate synthase. The family shows strong seq | 99.56 | |
| PRK12928 | 290 | lipoyl synthase; Provisional | 99.56 | |
| PRK00955 | 620 | hypothetical protein; Provisional | 99.51 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 99.51 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 99.49 | |
| PRK05481 | 289 | lipoyl synthase; Provisional | 99.49 | |
| PLN02428 | 349 | lipoic acid synthase | 99.44 | |
| PRK01254 | 707 | hypothetical protein; Provisional | 99.42 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 99.4 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 99.39 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 99.37 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy produc | 99.35 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 99.33 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 99.29 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 99.28 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 99.22 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 99.21 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 99.19 | |
| PTZ00413 | 398 | lipoate synthase; Provisional | 99.16 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 99.15 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 99.09 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 99.08 | |
| PRK10314 | 153 | putative acyltransferase; Provisional | 99.07 | |
| KOG2492 | 552 | consensus CDK5 activator-binding protein [Signal t | 99.05 | |
| PRK10146 | 144 | aminoalkylphosphonic acid N-acetyltransferase; Pro | 99.01 | |
| KOG4355 | 547 | consensus Predicted Fe-S oxidoreductase [General f | 99.0 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 98.99 | |
| PTZ00330 | 147 | acetyltransferase; Provisional | 98.99 | |
| TIGR02493 | 235 | PFLA pyruvate formate-lyase 1-activating enzyme. A | 98.98 | |
| TIGR00238 | 331 | KamA family protein. Note that the E. coli homolog | 98.97 | |
| TIGR01290 | 442 | nifB nitrogenase cofactor biosynthesis protein Nif | 98.95 | |
| PHA00673 | 154 | acetyltransferase domain containing protein | 98.95 | |
| TIGR03820 | 417 | lys_2_3_AblA lysine-2,3-aminomutase. This model de | 98.93 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 98.92 | |
| PLN02706 | 150 | glucosamine 6-phosphate N-acetyltransferase | 98.92 | |
| PF00583 | 83 | Acetyltransf_1: Acetyltransferase (GNAT) family; I | 98.88 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 98.86 | |
| KOG2900 | 380 | consensus Biotin synthase [Coenzyme transport and | 98.83 | |
| PF13673 | 117 | Acetyltransf_10: Acetyltransferase (GNAT) domain; | 98.82 | |
| PRK14456 | 368 | ribosomal RNA large subunit methyltransferase N; P | 98.79 | |
| PRK14460 | 354 | ribosomal RNA large subunit methyltransferase N; P | 98.76 | |
| TIGR03821 | 321 | AblA_like_1 lysine-2,3-aminomutase-related protein | 98.74 | |
| PRK11145 | 246 | pflA pyruvate formate lyase-activating enzyme 1; P | 98.72 | |
| PF13508 | 79 | Acetyltransf_7: Acetyltransferase (GNAT) domain; P | 98.69 | |
| PRK13762 | 322 | tRNA-modifying enzyme; Provisional | 98.68 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 98.67 | |
| PRK03624 | 140 | putative acetyltransferase; Provisional | 98.65 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 98.63 | |
| PRK13745 | 412 | anaerobic sulfatase-maturase; Provisional | 98.63 | |
| PRK14469 | 343 | ribosomal RNA large subunit methyltransferase N; P | 98.63 | |
| TIGR02382 | 191 | wecD_rffC TDP-D-fucosamine acetyltransferase. This | 98.62 | |
| TIGR01575 | 131 | rimI ribosomal-protein-alanine acetyltransferase. | 98.59 | |
| PRK10140 | 162 | putative acetyltransferase YhhY; Provisional | 98.58 | |
| KOG3139 | 165 | consensus N-acetyltransferase [General function pr | 98.56 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 98.56 | |
| PF13420 | 155 | Acetyltransf_4: Acetyltransferase (GNAT) domain; P | 98.55 | |
| TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker prot | 98.55 | |
| cd02169 | 297 | Citrate_lyase_ligase Citrate lyase ligase. Citrate | 98.55 | |
| PRK10975 | 194 | TDP-fucosamine acetyltransferase; Provisional | 98.54 | |
| PRK07922 | 169 | N-acetylglutamate synthase; Validated | 98.53 | |
| COG0641 | 378 | AslB Arylsulfatase regulator (Fe-S oxidoreductase) | 98.52 | |
| PRK14455 | 356 | ribosomal RNA large subunit methyltransferase N; P | 98.52 | |
| PRK14470 | 336 | ribosomal RNA large subunit methyltransferase N; P | 98.52 | |
| PRK14457 | 345 | ribosomal RNA large subunit methyltransferase N; P | 98.5 | |
| TIGR00048 | 355 | radical SAM enzyme, Cfr family. A Staphylococcus s | 98.49 | |
| KOG3397 | 225 | consensus Acetyltransferases [General function pre | 98.49 | |
| COG0320 | 306 | LipA Lipoate synthase [Coenzyme metabolism] | 98.48 | |
| PRK14463 | 349 | ribosomal RNA large subunit methyltransferase N; P | 98.48 | |
| TIGR03827 | 266 | GNAT_ablB putative beta-lysine N-acetyltransferase | 98.48 | |
| PRK14468 | 343 | ribosomal RNA large subunit methyltransferase N; P | 98.48 | |
| PRK14459 | 373 | ribosomal RNA large subunit methyltransferase N; P | 98.47 | |
| PRK09831 | 147 | putative acyltransferase; Provisional | 98.43 | |
| PHA01807 | 153 | hypothetical protein | 98.43 | |
| PF13527 | 127 | Acetyltransf_9: Acetyltransferase (GNAT) domain; P | 98.41 | |
| PRK07757 | 152 | acetyltransferase; Provisional | 98.41 | |
| TIGR03103 | 547 | trio_acet_GNAT GNAT-family acetyltransferase TIGR0 | 98.41 | |
| TIGR02406 | 157 | ectoine_EctA L-2,4-diaminobutyric acid acetyltrans | 98.41 | |
| PRK13688 | 156 | hypothetical protein; Provisional | 98.4 | |
| PLN02825 | 515 | amino-acid N-acetyltransferase | 98.38 | |
| PRK14466 | 345 | ribosomal RNA large subunit methyltransferase N; P | 98.37 | |
| PRK15130 | 186 | spermidine N1-acetyltransferase; Provisional | 98.34 | |
| PRK12308 | 614 | bifunctional argininosuccinate lyase/N-acetylgluta | 98.33 | |
| PRK09491 | 146 | rimI ribosomal-protein-alanine N-acetyltransferase | 98.32 | |
| PRK13758 | 370 | anaerobic sulfatase-maturase; Provisional | 98.32 | |
| PRK05279 | 441 | N-acetylglutamate synthase; Validated | 98.32 | |
| TIGR03448 | 292 | mycothiol_MshD mycothiol biosynthesis acetyltransf | 98.32 | |
| COG0456 | 177 | RimI Acetyltransferases [General function predicti | 98.31 | |
| COG2153 | 155 | ElaA Predicted acyltransferase [General function p | 98.28 | |
| TIGR01890 | 429 | N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi | 98.25 | |
| COG3153 | 171 | Predicted acetyltransferase [General function pred | 98.24 | |
| COG1509 | 369 | KamA Lysine 2,3-aminomutase [Amino acid transport | 98.23 | |
| KOG3396 | 150 | consensus Glucosamine-phosphate N-acetyltransferas | 98.23 | |
| COG2516 | 339 | Biotin synthase-related enzyme [General function p | 98.23 | |
| TIGR03585 | 156 | PseH pseudaminic acid biosynthesis N-acetyl transf | 98.22 | |
| COG1533 | 297 | SplB DNA repair photolyase [DNA replication, recom | 98.21 | |
| PRK10809 | 194 | ribosomal-protein-S5-alanine N-acetyltransferase; | 98.21 | |
| PRK14462 | 356 | ribosomal RNA large subunit methyltransferase N; P | 98.19 | |
| PRK10514 | 145 | putative acetyltransferase; Provisional | 98.18 | |
| COG0535 | 347 | Predicted Fe-S oxidoreductases [General function p | 98.18 | |
| COG2108 | 353 | Uncharacterized conserved protein related to pyruv | 98.15 | |
| PF13523 | 152 | Acetyltransf_8: Acetyltransferase (GNAT) domain; P | 98.14 | |
| TIGR03448 | 292 | mycothiol_MshD mycothiol biosynthesis acetyltransf | 98.13 | |
| PRK14467 | 348 | ribosomal RNA large subunit methyltransferase N; P | 98.13 | |
| PRK14465 | 342 | ribosomal RNA large subunit methyltransferase N; P | 98.12 | |
| KOG2488 | 202 | consensus Acetyltransferase (GNAT) domain-containi | 98.1 | |
| PRK14453 | 347 | chloramphenicol/florfenicol resistance protein; Pr | 98.1 | |
| TIGR01686 | 320 | FkbH FkbH-like domain. The C-terminal portion of t | 98.09 | |
| KOG3216 | 163 | consensus Diamine acetyltransferase [Amino acid tr | 98.07 | |
| TIGR00124 | 332 | cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP | 98.04 | |
| PRK10151 | 179 | ribosomal-protein-L7/L12-serine acetyltransferase; | 98.0 | |
| PRK10562 | 145 | putative acetyltransferase; Provisional | 97.97 | |
| PRK01346 | 411 | hypothetical protein; Provisional | 97.91 | |
| PF13302 | 142 | Acetyltransf_3: Acetyltransferase (GNAT) domain; P | 97.9 | |
| PRK14464 | 344 | ribosomal RNA large subunit methyltransferase N; P | 97.89 | |
| TIGR03279 | 433 | cyano_FeS_chp putative FeS-containing Cyanobacteri | 97.81 | |
| COG0731 | 296 | Fe-S oxidoreductases [Energy production and conver | 97.8 | |
| TIGR02494 | 295 | PFLE_PFLC glycyl-radical enzyme activating protein | 97.77 | |
| PRK14454 | 342 | ribosomal RNA large subunit methyltransferase N; P | 97.77 | |
| PRK11194 | 372 | ribosomal RNA large subunit methyltransferase N; P | 97.76 | |
| COG1247 | 169 | Sortase and related acyltransferases [Cell envelop | 97.71 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairp | 97.66 | |
| COG1246 | 153 | ArgA N-acetylglutamate synthase and related acetyl | 97.63 | |
| PF08445 | 86 | FR47: FR47-like protein; InterPro: IPR013653 Prote | 97.49 | |
| COG1180 | 260 | PflA Pyruvate-formate lyase-activating enzyme [Pos | 97.48 | |
| KOG3138 | 187 | consensus Predicted N-acetyltransferase [General f | 97.46 | |
| KOG3235 | 193 | consensus Subunit of the major N alpha-acetyltrans | 97.27 | |
| cd04301 | 65 | NAT_SF N-Acyltransferase superfamily: Various enzy | 97.17 | |
| KOG3234 | 173 | consensus Acetyltransferase, (GNAT) family [Genera | 97.17 | |
| PRK14461 | 371 | ribosomal RNA large subunit methyltransferase N; P | 97.08 | |
| COG1670 | 187 | RimL Acetyltransferases, including N-acetylases of | 97.06 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 97.02 | |
| KOG2672 | 360 | consensus Lipoate synthase [Coenzyme transport and | 96.95 | |
| COG1625 | 414 | Fe-S oxidoreductase, related to NifB/MoaA family [ | 96.91 | |
| TIGR03365 | 238 | Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn | 96.79 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 96.76 | |
| COG3981 | 174 | Predicted acetyltransferase [General function pred | 96.71 | |
| COG0820 | 349 | Predicted Fe-S-cluster redox enzyme [General funct | 96.44 | |
| PF14542 | 78 | Acetyltransf_CG: GCN5-related N-acetyl-transferase | 96.43 | |
| PF13394 | 119 | Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B | 96.41 | |
| COG0454 | 156 | WecD Histone acetyltransferase HPA2 and related ac | 96.25 | |
| COG3393 | 268 | Predicted acetyltransferase [General function pred | 96.25 | |
| KOG4144 | 190 | consensus Arylalkylamine N-acetyltransferase [Gene | 96.15 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 95.55 | |
| COG5014 | 228 | Predicted Fe-S oxidoreductase [General function pr | 95.01 | |
| COG2388 | 99 | Predicted acetyltransferase [General function pred | 94.94 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 94.88 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 94.73 | |
| PF13718 | 196 | GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2Z | 93.71 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 93.67 | |
| PF13353 | 139 | Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A | 93.15 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 92.65 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 92.56 | |
| COG1313 | 335 | PflX Uncharacterized Fe-S protein PflX, homolog of | 92.56 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 92.22 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 91.83 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 91.82 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 91.35 | |
| TIGR02826 | 147 | RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph | 91.22 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 90.86 | |
| COG5628 | 143 | Predicted acetyltransferase [General function pred | 90.76 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 90.48 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 90.35 | |
| PF12746 | 265 | GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S | 90.27 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 89.98 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 89.89 | |
| COG1809 | 258 | (2R)-phospho-3-sulfolactate synthase (PSL synthase | 89.79 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 89.59 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 89.53 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 89.4 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 89.36 | |
| KOG4135 | 185 | consensus Predicted phosphoglucosamine acetyltrans | 89.31 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 89.26 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 89.18 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 89.09 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 89.04 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 88.94 | |
| TIGR02491 | 154 | NrdG anaerobic ribonucleoside-triphosphate reducta | 88.84 | |
| KOG2876 | 323 | consensus Molybdenum cofactor biosynthesis pathway | 88.74 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 88.52 | |
| PF12568 | 128 | DUF3749: Acetyltransferase (GNAT) domain; InterPro | 88.38 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 88.33 | |
| PRK08005 | 210 | epimerase; Validated | 87.73 | |
| PRK15452 | 443 | putative protease; Provisional | 87.06 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 87.05 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 86.56 | |
| COG4552 | 389 | Eis Predicted acetyltransferase involved in intrac | 86.22 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 85.79 | |
| PRK11121 | 154 | nrdG anaerobic ribonucleotide reductase-activating | 84.77 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 83.79 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 83.64 | |
| TIGR03827 | 266 | GNAT_ablB putative beta-lysine N-acetyltransferase | 83.61 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 83.56 | |
| COG1964 | 475 | Predicted Fe-S oxidoreductases [General function p | 82.8 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 82.2 | |
| COG0602 | 212 | NrdG Organic radical activating enzymes [Posttrans | 82.13 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 82.1 | |
| PF13480 | 142 | Acetyltransf_6: Acetyltransferase (GNAT) domain | 81.9 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 81.76 |
| >KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-149 Score=1107.72 Aligned_cols=553 Identities=77% Similarity=1.257 Sum_probs=545.0
Q ss_pred cCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhCCCCCCCHHHHHHhCChhhHHHhhh
Q 008466 12 KLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLP 91 (564)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~i~~~~~~~~~~~l~~ 91 (564)
+.+++|.++.+..+.+..+.+.++|++|+.+|++.+..+++.+|+.+|..+++||.++..|+..||++++|+.+++.|++
T Consensus 2 ~~~~kg~~~~~~~~~~~~e~~~~~~~ei~~elie~~~~~k~i~ln~~k~~~~~Ky~L~~~PrlvdiIa~vP~~~k~~Llp 81 (554)
T KOG2535|consen 2 KQKRKGPKELIRPSLSPRELFVLAIGEIVKELIEAHEQNKDIDLNALKTKVARKYGLSAQPRLVDIIAAVPPQYKKSLLP 81 (554)
T ss_pred CCCCCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhCCccCchHHHHHhhCChHHHHhhhH
Confidence 45678888888888899889999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccCCceeEEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHH
Q 008466 92 KLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQ 171 (564)
Q Consensus 92 ~l~~kp~rt~sgv~vvavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~ 171 (564)
.|++||+||+|||+||||||+||.||||.|.++.|.||||||||||.+|+|||||+||+||||++.+|+||+|+..|+.|
T Consensus 82 kLrAKPvRTASGiAVVAVMcKPHRCPHIa~TGNiCVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRaRYdP~~QaR~Rv~Q 161 (554)
T KOG2535|consen 82 KLRAKPVRTASGIAVVAVMCKPHRCPHIAFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPYLQARGRVEQ 161 (554)
T ss_pred HhccCccccccceEEEEEecCCCCCCceeccCCEEEECCCCCCccceeecccccCcCcchHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHH
Q 008466 172 LKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQ 251 (564)
Q Consensus 172 l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~ 251 (564)
|+++||++|||+.|+|||||++||.+|.+.|++.+++++.++.+.+++||++++|.|..+|++||||||||+|...+|+.
T Consensus 162 Lk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIETRPDyC~~~Hl~~ 241 (554)
T KOG2535|consen 162 LKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIETRPDYCLKRHLSD 241 (554)
T ss_pred HHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEeecCcccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCe
Q 008466 252 MLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADG 331 (564)
Q Consensus 252 L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~ 331 (564)
|..+||+|++|||||.++++.+..|||||+..+.+++.+++++||+|+.|||+.||+-..|.+++.|.+.|++++|++|+
T Consensus 242 ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF~E~FenP~FR~DG 321 (554)
T KOG2535|consen 242 MLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQFKEYFENPAFRPDG 321 (554)
T ss_pred HHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCceeehhhCCCCCCCchhhhHHHHHHHhcCcCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhcccc
Q 008466 332 LKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDL 411 (564)
Q Consensus 332 i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~ 411 (564)
+++||+++++||.||++|+.|+|+.++++.++++++.+++++|||+|++|+|||||++|+.+|++|+|+|++|+.+|++.
T Consensus 322 LKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILalVPPWtRvYRvQRDIPMpLVsSGVe~GNlRElAlarMkdl 401 (554)
T KOG2535|consen 322 LKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDL 401 (554)
T ss_pred ceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhhCCchhheeeeccCCCccccccccccCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeeEEeccccccccCCCcceEEEEEEEeeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeee
Q 008466 412 GLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRE 491 (564)
Q Consensus 412 g~~c~~ir~re~~~~~~~~~~~~~~~e~~~~~y~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~re 491 (564)
|.+||++|+||+|++++|+++.|+++|+.++||.||||||+|||||||++|+|||.||||.++...+++|+.+..++|||
T Consensus 402 g~~CRDvRtREvGiqeiH~kv~PeqvELvRRDY~ANgGWETFlSYEDpkqDILiGLLRLRkcs~~~~~~el~g~~SivRE 481 (554)
T KOG2535|consen 402 GTKCRDVRTREVGIQEIHHKVRPEQVELVRRDYVANGGWETFLSYEDPKQDILIGLLRLRKCSKKTTRPELFGSQSIVRE 481 (554)
T ss_pred CccchhhhhhhccHHHHhhccCHHHhhhhhhhhcccCChheeecccCcchhHHHHHHHHhhcccccccchhcCccchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred eeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCceEeeecC
Q 008466 492 LHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564 (564)
Q Consensus 492 lhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~l~ 564 (564)
|||||++|||+.+|+..|||||+|+.||++||++|+++||..+|.++|++++++||+|+||+.+||||+|.|.
T Consensus 482 LHVYGs~vpv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~klGY~LdGPYM~K~l~ 554 (554)
T KOG2535|consen 482 LHVYGSVVPVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKLGYELDGPYMVKMLK 554 (554)
T ss_pred eeecceeeecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHhhCeeecChhHhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999874
|
|
| >COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-134 Score=1041.22 Aligned_cols=513 Identities=53% Similarity=0.907 Sum_probs=495.1
Q ss_pred HHHHHHHHHhhccCCCccCHHHHHHHHHHHhCCCCCCCHHHHHHhCChhhHHHhhhHHhcCCCCccCCceeEEeecCCCC
Q 008466 36 IAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHR 115 (564)
Q Consensus 36 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~i~~~~~~~~~~~l~~~l~~kp~rt~sgv~vvavmt~p~~ 115 (564)
|++|+.+|++++ ..++. |+++|..+|++|.++..|+++||+.+++++++ |.+.|++||+||+|||+||||||+|++
T Consensus 1 ~~ei~~~~~~g~-~~~~~-l~~~k~~~~r~y~l~~~p~~~dil~~~~~~~~--l~~~lr~KPvRt~sgvaVVaVmt~p~~ 76 (515)
T COG1243 1 CEEIVEELLSGE-IKKKE-LEDLKLEVSRKYGLSKVPRNSDILNAAPPEER--LREILRRKPVRTISGVAVVAVMTSPHG 76 (515)
T ss_pred ChhHHHHHHccc-hhhHH-HHHHHHHHHHHhCcccCCchhHHHHhCChHHH--HHHHHhhcCccccccceEEEEecCCCC
Confidence 689999999988 34444 99999999999999999999999999998877 899999999999999999999999999
Q ss_pred CccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCC
Q 008466 116 CPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLP 195 (564)
Q Consensus 116 cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~ 195 (564)
||| ++|.||||||+ + .+||||+|.+|+++|++++.||||.|+..|+.||..+||+.+||+.||||||||++|
T Consensus 77 CPH-----g~CvfCpgg~~--~-~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~~ 148 (515)
T COG1243 77 CPH-----GRCVFCPGGPD--K-DSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTALS 148 (515)
T ss_pred CCC-----CeEEeCCCCCC--C-CCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccCCC
Confidence 999 99999999997 3 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhc
Q 008466 196 ADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDT 275 (564)
Q Consensus 196 ~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i 275 (564)
.+|++||++.++++++++ +..+|||++.||+|..+|+++|||||||+|++++|+.|+++|+|+|++||||++|++|+.+
T Consensus 149 ~~yqe~Fi~~~~~amn~f-~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~ 227 (515)
T COG1243 149 LEYQEWFLKVALKAMNDF-GYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLERT 227 (515)
T ss_pred HHHHHHHHHHHHHhhhcc-chhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHHh
Confidence 999999999999999987 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCC
Q 008466 276 NRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYR 355 (564)
Q Consensus 276 ~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~ 355 (564)
|||||++++.+|.+++|++||+++.|+|+||||.+.+.++++|+.+|+++.|+||.++|||++|++||+||++|++|.|+
T Consensus 228 ~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Yk 307 (515)
T COG1243 228 KRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYK 307 (515)
T ss_pred cCCccHHHHHHHHHHHHhcCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCcccceeeEEeccccccccCCC-
Q 008466 356 NYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKP- 434 (564)
Q Consensus 356 ~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir~re~~~~~~~~~~~~- 434 (564)
|++.||++++++.++.++|+|+|++|||||||++++.+|+.++|+||++.++|++.|++|+||||||+||+..++++-+
T Consensus 308 py~~EEaVeli~~i~~~~p~wvRV~RIqrdIP~~li~~GV~~snlReLv~~rm~~~g~kc~~iR~REvg~~~~~~~~~~~ 387 (515)
T COG1243 308 PYTTEEAVELIVEIYRLEPKWVRVIRIQRDIPAELIVDGVKKSNLRELVENRMREEGIKCRCIRCREVGIVVVKNVVIPP 387 (515)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEeccCCchHHhhhcccccCHHHHHHHHHHHhCCccceeeeeeccccccccCcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887765443
Q ss_pred -cceEEEEEEEeeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcC
Q 008466 435 -EEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQG 513 (564)
Q Consensus 435 -~~~e~~~~~y~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~G 513 (564)
+++.+.+++|.|+||+|+|+||+|+++|.++||+|||+|++.+||+|+.+.+|+||||||||++|||++. +..|||+|
T Consensus 388 ~~~~~l~~e~y~a~gg~e~Fls~ed~~~d~lig~lrlR~p~e~~~r~e~~~~~aivrelhvyg~~vpig~~-~~~~QH~G 466 (515)
T COG1243 388 VEQILLKREEYEASGGTEIFLSYEDPKNDILIGFLRLREPSEGAHREEIDDKTAIVRELHVYGSEVPIGKR-EDEWQHRG 466 (515)
T ss_pred ccceeeeeeeeeccCCEEEEeecccchhhhhhheeeecccccchhhhhcccchhhhhhhhccccccccccC-cchhhccc
Confidence 4555699999999999999999999999999999999999899999999779999999999999999996 67899999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCceEeeec
Q 008466 514 YGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 514 iG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
+|++||++||++|+++ |..+|.|+|++||+.||+|+||+.+||||+|.|
T Consensus 467 ~G~~L~~~AE~ia~ee-~~~ki~viSgiG~ReYy~k~GY~~~gpYm~K~l 515 (515)
T COG1243 467 YGRELLEEAERIAREE-GAKKILVISGIGVREYYRKLGYELDGPYMSKRL 515 (515)
T ss_pred HHHHHHHHHHHHHHhh-ccccEEEEecccHHHHHHHhCccccCCcccccC
Confidence 9999999999999997 799999999999999999999999999999987
|
|
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-116 Score=956.86 Aligned_cols=516 Identities=52% Similarity=0.926 Sum_probs=493.2
Q ss_pred HHHHHHHhhccCCCccCHHHHHHHHHHHhCCCCCCCHHHHHHhCChhhHHHhhhHHhcCCCCccCCceeEEeecCCCCCc
Q 008466 38 EIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCP 117 (564)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~i~~~~~~~~~~~l~~~l~~kp~rt~sgv~vvavmt~p~~cp 117 (564)
+|++.|+++. ..++.+++++|..++++|+++..|+++||++++++++++.|+++|++||+||+|||+||||||+|+.||
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kp~rt~sgv~~v~vm~~p~~cp 79 (522)
T TIGR01211 1 EIVDSLLSGK-TRDKEDLEDLKLEVSRKYGLSKVPSNSEILNSAPDEEKKKLEPILRKKPVRTISGVAVVAVMTSPHRCP 79 (522)
T ss_pred CHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCccCCchHHHHhhCCHHHHHHHHHHHhcCCcccccCeEEEEEecCCccCC
Confidence 3788888876 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHH
Q 008466 118 HIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPAD 197 (564)
Q Consensus 118 hIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~ 197 (564)
| ++|.||||||+| |. +||||+|+||++|||.+++++||+|+..++.++..+||.++|||+||+|||||++|.+
T Consensus 80 h-----~~c~~cp~~~~~-~~-~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~ 152 (522)
T TIGR01211 80 H-----GKCLYCPGGPDS-EN-SPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLD 152 (522)
T ss_pred C-----CceEeCCCCCCc-CC-CCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHH
Confidence 9 999999999998 75 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCch-----hhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 198 YRDYFIRNLHDALSGHTSA-----NVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 198 ~l~~ll~~l~~~~~~~~~~-----~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
|+++|++.+.+++++|.+. .+++++.+||.+..+++++|||||||++++++|+.|+++|++||+|||||+++++|
T Consensus 153 y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL 232 (522)
T TIGR01211 153 YQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDIL 232 (522)
T ss_pred HHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHH
Confidence 9999999999999875432 48999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
+.+|||||++++.+|+++++++||++++|||+||||+|.+++.++++.+++++.++||+|++|||.|.+||+|+++|++|
T Consensus 233 ~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G 312 (522)
T TIGR01211 233 ERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRG 312 (522)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999998666699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCcccceeeEEeccccccc-c
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHH-Q 431 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir~re~~~~~~~~-~ 431 (564)
.|++++.++++++++.++..+|+|++++|+|+|||+..+.+|.+|.++++++.++|++.|+.|+||||||+|++..|. .
T Consensus 313 ~y~p~t~ee~v~l~~~~~~~lp~~i~v~R~qrdip~~~l~ag~~k~~l~~li~~~l~~~G~~~~~ir~reig~~~~~~~~ 392 (522)
T TIGR01211 313 EYKPYTTEEAVELIVEIKRMMPKWVRIQRIQRDIPAPLIVAGVKKSNLRELVYRRMKEHGITCRCIRCREVGHQMVKPVQ 392 (522)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCcceEEEeeccCCChhhccCccchHHHHHHHHHHHHHCCCeeccccchhcCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876654 2
Q ss_pred CCCcceEEEEEEEeeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhh
Q 008466 432 IKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQH 511 (564)
Q Consensus 432 ~~~~~~e~~~~~y~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~ 511 (564)
.+.+.+++.+++|.+++|++.|++|+|+.++.|||||+|+++++..+|+++.+ +++||||||||++|+|+...+.+|||
T Consensus 393 ~~~~~~~l~~~~y~a~~G~e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~-~a~IrelhV~G~~~~~~~~~~~~~rg 471 (522)
T TIGR01211 393 PEEENVELIVEEYAASGGTEFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDA-TALVRELHVYGSEVPIGERGDDEWQH 471 (522)
T ss_pred CCchheeeehhhhHHhCCCeEEEEEEcCCCCeEEEEEEEecCcccccccccCC-CceEEEEEEeeeeccccccCChhHhC
Confidence 33467889999999999999999999999999999999999988899999984 99999999999999999877788999
Q ss_pred cCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCceEeeec
Q 008466 512 QGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 512 ~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
+|||++||++||++|+++ |+.+|.|.+|.+|++||+|+||+..|+||+|.|
T Consensus 472 ~GiG~~Ll~~ae~~Ar~~-G~~~i~v~s~~~A~~FY~klGf~~~g~ym~K~l 522 (522)
T TIGR01211 472 RGYGRRLLEEAERIAAEE-GSEKILVISGIGVREYYRKLGYELDGPYMSKRL 522 (522)
T ss_pred cCHHHHHHHHHHHHHHHC-CCCEEEEeeCchHHHHHHHCCCEEEcceeEEeC
Confidence 999999999999999995 999999999999999999999999999999987
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=402.20 Aligned_cols=304 Identities=19% Similarity=0.273 Sum_probs=254.0
Q ss_pred HHHHHHHHhhccCCCccCHHHHHHHHHHHhCCCCCCCHHHHHHhCChhhHHHhhhHHhcCCCCccCCceeEEeecCCCCC
Q 008466 37 AEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRC 116 (564)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~i~~~~~~~~~~~l~~~l~~kp~rt~sgv~vvavmt~p~~c 116 (564)
.+|++++|+.+. +.+++.+.+.+.|.++ ++|++|+..++..|++.|.+ .+-++.| +|
T Consensus 111 ~k~~~~~~~~g~-----~~~~~~~~~~~~y~~~--~~k~~l~~~~~~~~~~~~~~----~~~~~~s------------LY 167 (488)
T PRK08207 111 TKILHKLLDEGL-----SKEEIHKELKEEYLIS--EEKAKLLLEIAKRELSFLLY----RDKNEVS------------IY 167 (488)
T ss_pred HHHHHHHHHcCC-----CHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHhhcc----CCCCceE------------EE
Confidence 688999998773 7788899999999999 99999999999999875421 2223332 69
Q ss_pred ccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCC--CCCcEEEE-EEcCCCCC
Q 008466 117 PHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGH--SVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 117 phIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~--~~~kve~I-~~GGTpt~ 193 (564)
+|||||+.+|.|| +|... ...+. ....++|++.+.++++...... ...++.+| |+|||||.
T Consensus 168 ihIPFC~~~C~YC------sf~s~--~~~~~--------~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~ 231 (488)
T PRK08207 168 IGIPFCPTRCLYC------SFPSY--PIKGY--------KGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTS 231 (488)
T ss_pred EecCCCCCcCCCC------CCccc--cCCCC--------cchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccC
Confidence 9999999999999 77521 11221 2346789999988877543211 12368888 68999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
++++.+.++++.+.+.++. ...+.++|+|+ |||+++++.|+.|+++|++||+||+||+++++|
T Consensus 232 L~~~~L~~Ll~~i~~~f~~----------------~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vL 295 (488)
T PRK08207 232 LTAEELERLLEEIYENFPD----------------VKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETL 295 (488)
T ss_pred CCHHHHHHHHHHHHHhccc----------------cCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHH
Confidence 9999999999999887732 12456999997 999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCC-cEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGF-KVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~-~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
+.+||+||.+++.++++.++++|| .+++|||+||||||.+++.++++.+. +++|+++++|+|.+.|||+|++++
T Consensus 296 k~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~---~L~pd~isv~~L~i~~gT~l~~~~-- 370 (488)
T PRK08207 296 KAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIE---KLNPESLTVHTLAIKRASRLTENK-- 370 (488)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH---hcCcCEEEEEeceEcCCChHHHhc--
Confidence 999999999999999999999999 58899999999999999999999997 688999999999999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcc------------hHHHHHHhhccccCCccccee
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKG------------NLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~------------~~~~~a~~~~~~~g~~c~~ir 419 (564)
+.+..+++++..+|+..+.+. +...|+.+| +.++||+ .|.+|+||.
T Consensus 371 ~~~~~~~~~~~~~m~~~a~~~-----------------l~~~Gy~~Yylyrqk~~~~n~E~~~ya~-----~g~~~~~N~ 428 (488)
T PRK08207 371 EKYKVADREEIEKMMEEAEEW-----------------AKELGYVPYYLYRQKNMLGNLENVGYAK-----PGKESIYNI 428 (488)
T ss_pred CcCCCcCHHHHHHHHHHHHHH-----------------HHHcCCHhhhhhhccccccccceecccC-----CCcchhhHH
Confidence 567788999999998877776 467888888 6677774 588999996
Q ss_pred -eEE
Q 008466 420 -TRE 422 (564)
Q Consensus 420 -~re 422 (564)
.+|
T Consensus 429 ~~w~ 432 (488)
T PRK08207 429 QIME 432 (488)
T ss_pred HHHc
Confidence 454
|
|
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=396.16 Aligned_cols=246 Identities=17% Similarity=0.192 Sum_probs=217.2
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFM 192 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt 192 (564)
++|+|||||..+|.|| ||. ++...+ ...+.|++++.+++++........++++| |||||||
T Consensus 13 ~lYiHiPFC~~~C~yC------~f~----~~~~~~--------~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs 74 (390)
T PRK06582 13 SIYIHWPFCLSKCPYC------DFN----SHVAST--------IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPS 74 (390)
T ss_pred EEEEEeCCCcCcCCCC------CCe----eccCCC--------CCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccc
Confidence 4699999999999999 886 332221 13477999999988764432223468898 5799999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++.++++++.+++.+. .+.+.++|+|+||++++++.|+.|+++|++||||||||+++++|
T Consensus 75 ~l~~~~l~~ll~~i~~~~~-----------------~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L 137 (390)
T PRK06582 75 LMNPVIVEGIINKISNLAI-----------------IDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDL 137 (390)
T ss_pred cCCHHHHHHHHHHHHHhCC-----------------CCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHH
Confidence 9999999999999988764 13567999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
+.+||+|+.+++.++++.+++++..+++|+|+||||||.+++.++++.+. +++|+||++|+|++.|||+|++++++|
T Consensus 138 ~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt~e~~~~~l~~~~---~l~p~his~y~L~i~~gT~l~~~~~~g 214 (390)
T PRK06582 138 KKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQTLKDWQEELKQAM---QLATSHISLYQLTIEKGTPFYKLFKEG 214 (390)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCCHHHHHHHHHHHH---hcCCCEEEEecCEEccCChHHHHHhcC
Confidence 99999999999999999999996679999999999999999999999998 688999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
.+.++++++..+|+..+.+. |..+|+.+|++++||+ .|.+|+|++
T Consensus 215 ~~~~p~~~~~~~~~~~~~~~-----------------L~~~Gy~~yeis~fa~-----~g~~~~hn~ 259 (390)
T PRK06582 215 NLILPHSDAAAEMYEWTNHY-----------------LESKKYFRYEISNYAK-----IGQECLHNL 259 (390)
T ss_pred CCCCCChHHHHHHHHHHHHH-----------------HHHcCCceeeceeeeC-----CChhhhhHH
Confidence 99999999999999888776 4789999999999996 478899986
|
|
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=389.40 Aligned_cols=246 Identities=20% Similarity=0.211 Sum_probs=217.2
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+|+|||||.++|.|| ||+ +....+ ...++|++++.+++++........++++| |||||||.
T Consensus 7 lYiHIPFC~~kC~yC------~f~----~~~~~~--------~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~ 68 (380)
T PRK09057 7 LYVHWPFCLAKCPYC------DFN----SHVRHA--------IDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSL 68 (380)
T ss_pred EEEEeCCcCCcCCCC------CCc----ccCcCc--------CCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCcccc
Confidence 699999999999999 886 222111 12467999999998865433233568888 57999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~ 273 (564)
+|+++++++++.|++.++. ...+++|+|++|++++.+.|+.|+++|++||||||||++|++|+
T Consensus 69 l~~~~L~~ll~~i~~~f~~-----------------~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~ 131 (380)
T PRK09057 69 MQPETVAALLDAIARLWPV-----------------ADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLR 131 (380)
T ss_pred CCHHHHHHHHHHHHHhCCC-----------------CCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 9999999999999998761 34579999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCC
Q 008466 274 DTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGR 353 (564)
Q Consensus 274 ~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~ 353 (564)
.+||+|+.+++.+++++++++++.+++|||+||||||.+++.++++.++ +++|++|++|++++.|||+|++++++|.
T Consensus 132 ~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt~~~~~~~l~~~~---~l~p~~is~y~L~~~~gT~l~~~~~~g~ 208 (380)
T PRK09057 132 FLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQTLAAWRAELKEAL---SLAADHLSLYQLTIEEGTAFYGLHAAGK 208 (380)
T ss_pred HcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCCHHHHHHHHHHHH---hcCCCeEEeecceecCCChHHHHHhcCC
Confidence 9999999999999999999997789999999999999999999999998 5789999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCcccceee
Q 008466 354 YRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 420 (564)
Q Consensus 354 ~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir~ 420 (564)
+..+++++..+++..+... +..+|+.+|++++|++ .|..|+|+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~-----------------L~~~G~~~ye~s~~a~-----~g~~~~hn~~ 253 (380)
T PRK09057 209 LILPDEDLAADLYELTQEI-----------------TAAAGLPAYEISNHAR-----PGAESRHNLT 253 (380)
T ss_pred CCCCChHHHHHHHHHHHHH-----------------HHHcCCchhhhHHHcC-----CCchhhhHHH
Confidence 9999999999999888776 4678999999999995 5888999863
|
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=387.14 Aligned_cols=251 Identities=20% Similarity=0.271 Sum_probs=217.1
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFM 192 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt 192 (564)
++|+|||||+.+|.|| +|+.+. .+.... .+ .....++|++.+.++++.... ....+++| |+|||||
T Consensus 12 ~lYiHiPFC~~~C~YC------~f~~~~---~~~~~~-~~-~~~~~~~Y~~~L~~Ei~~~~~--~~~~i~~iy~GGGTps 78 (400)
T PRK07379 12 SAYIHIPFCRRRCFYC------DFPISV---VGDRTR-GG-TSGLIEEYVEVLCQEIAITPS--FGQPLQTVFFGGGTPS 78 (400)
T ss_pred EEEEEeccccCcCCCC------CCcccc---cccccc-cc-ccchHHHHHHHHHHHHHHhhc--cCCceeEEEECCCccc
Confidence 4799999999999999 886221 111000 00 012457799999999876432 22458888 5789999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++++.++++.|.+.++. ....++|+|++|++++++.|+.|+++|++||||||||+++++|
T Consensus 79 ~l~~~~l~~ll~~i~~~~~~-----------------~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L 141 (400)
T PRK07379 79 LLSVEQLERILTTLDQRFGI-----------------APDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELL 141 (400)
T ss_pred cCCHHHHHHHHHHHHHhCCC-----------------CCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHH
Confidence 99999999999999987752 2447999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
+.+||+||.+++.++++.++++||+ +++|||+||||||.+++.++++.+. +++|++|++|++.+.|||+|++++++
T Consensus 142 ~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~---~l~p~~is~y~L~~~pgT~l~~~~~~ 218 (400)
T PRK07379 142 ALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAI---ALNPTHLSCYDLVLEPGTAFGKQYQP 218 (400)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH---cCCCCEEEEecceecCCchhHHHhhc
Confidence 9999999999999999999999998 7789999999999999999999998 68899999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
|.+.++++++..+|+..+.+. |..+|+.+|+++|||+ .|.+|+|+.
T Consensus 219 g~~~~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~yeisnfa~-----~g~~~~hn~ 264 (400)
T PRK07379 219 GKAPLPSDETTAAMYRLAQEI-----------------LTQAGYEHYEISNYAK-----PGYQCRHNR 264 (400)
T ss_pred CCCCCCCHHHHHHHHHHHHHH-----------------HHHcCCceeeeeheEC-----CChHHHHHH
Confidence 999999999999999888776 4789999999999996 478899986
|
|
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=380.29 Aligned_cols=252 Identities=21% Similarity=0.292 Sum_probs=222.7
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCC-CcEEEE-EEcCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV-DKVEFI-LMGGTF 191 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~-~kve~I-~~GGTp 191 (564)
++|+|||||..+|.|| ||+ ++.... ....+.|.+++.+++.....-... ..|.+| ||||||
T Consensus 36 slYiHiPFC~~~C~YC------~fn----~~~~~~-------~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTP 98 (416)
T COG0635 36 SLYIHIPFCVSKCPYC------DFN----SHVTKR-------GQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTP 98 (416)
T ss_pred EEEEEcccccccCCCC------CCe----eeccCC-------CChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCcc
Confidence 3699999999999999 886 322221 025788999999999866543322 469999 589999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHH
Q 008466 192 MSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDV 271 (564)
Q Consensus 192 t~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~v 271 (564)
|.|+++.++++++.|.+.++ . ...++|||+|++|++++.+.++.|+++|+||||+||||+++++
T Consensus 99 slL~~~~l~~ll~~l~~~~~-~---------------~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~ 162 (416)
T COG0635 99 SLLSPEQLERLLKALRELFN-D---------------LDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEV 162 (416)
T ss_pred ccCCHHHHHHHHHHHHHhcc-c---------------CCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 99999999999999999885 1 2456899999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHH
Q 008466 272 ARDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWK 350 (564)
Q Consensus 272 L~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~ 350 (564)
|+.+||.|+.+++.+++..+++.||. +++|||+|||+||.+++.++++.++ +++||||++|.|++.|+|++++...
T Consensus 163 lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~---~l~pdhis~y~L~~~p~t~~~~~~~ 239 (416)
T COG0635 163 LKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQAL---ELGPDHLSLYSLAIEPGTKFAQRKI 239 (416)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEEeeeecCCCchhhhhcc
Confidence 99999999999999999999999998 7789999999999999999999998 6889999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee-eEEec
Q 008466 351 TGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR-TREAG 424 (564)
Q Consensus 351 ~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir-~re~~ 424 (564)
+|. ..++.++.++++..+.+. +..+|+.+|+++|||+ .|.+|+||. .++.+
T Consensus 240 ~~~-~lP~~d~~~~~~~~~~e~-----------------L~~~Gy~~yeisnfa~-----~~~e~~hNl~yw~~~ 291 (416)
T COG0635 240 KGK-ALPDEDEKADMYELVEEL-----------------LEKAGYRQYEISNFAK-----PGGECRHNLQYWETK 291 (416)
T ss_pred cCC-CCcChHHHHHHHHHHHHH-----------------HHHCCCcEEeechhcC-----cchHHHhhhccccCC
Confidence 999 788999999999888876 5889999999999997 789999997 44444
|
|
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=371.30 Aligned_cols=242 Identities=17% Similarity=0.217 Sum_probs=208.2
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHH-HHHHHcCCCCCcEEEE-EEcCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRI-DQLKRLGHSVDKVEFI-LMGGTF 191 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~-~~l~~~g~~~~kve~I-~~GGTp 191 (564)
++|+|||||..+|.|| +|.. +...+ ...+.|.+.+.++ +...........+++| ||||||
T Consensus 8 ~lYiHIPFC~~~C~yC------~f~~----~~~~~--------~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTP 69 (370)
T PRK06294 8 ALYIHIPFCTKKCHYC------SFYT----IPYKE--------ESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTP 69 (370)
T ss_pred EEEEEeCCccCcCCCC------cCcc----cCCCc--------cCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCcc
Confidence 3699999999999999 8862 21111 2356799998887 4433211123458888 579999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHH
Q 008466 192 MSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDV 271 (564)
Q Consensus 192 t~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~v 271 (564)
|.+|++.+.++++.|.+. .+.++|+|++|++++++.++.|+++|++||||||||+++++
T Consensus 70 s~l~~~~l~~ll~~i~~~---------------------~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~ 128 (370)
T PRK06294 70 SLVPPALIQDILKTLEAP---------------------HATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPL 128 (370)
T ss_pred ccCCHHHHHHHHHHHHhC---------------------CCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHH
Confidence 999999999999988642 23689999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHH
Q 008466 272 ARDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWK 350 (564)
Q Consensus 272 L~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~ 350 (564)
|+.+||+|+.+++.++++.++++||. +++|||+|+||||.+++.++++.++ +++|++|++|++++.|||++++..+
T Consensus 129 L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~---~l~~~~is~y~l~~~~gT~l~~~~~ 205 (370)
T PRK06294 129 LKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAI---TLPITHISLYNLTIDPHTSFYKHRK 205 (370)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH---ccCCCeEEEeeeEecCCChHHHHHh
Confidence 99999999999999999999999997 7899999999999999999999998 6889999999999999999999988
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 351 TGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 351 ~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
++...++++++..+|+..+.+. +..+|+.+|++++||+ .|.+|+|+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~yeis~fa~-----~~~~~~hN~ 252 (370)
T PRK06294 206 RLLPSIADEEILAEMSLAAEEL-----------------LTSQGFTRYELASYAK-----PQAQSKHNT 252 (370)
T ss_pred cCCCCCcCHHHHHHHHHHHHHH-----------------HHHcCCCeeeeeeeeC-----CCchhhhhh
Confidence 8887778889989998877775 4789999999999996 467788875
|
|
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=368.69 Aligned_cols=250 Identities=22% Similarity=0.235 Sum_probs=215.7
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCC--CCCcEEEE-EEcCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGH--SVDKVEFI-LMGGT 190 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~--~~~kve~I-~~GGT 190 (564)
++|+|||||+.+|.|| +|+ +++..+. + .....++|++.+.+++++....+ ....+++| |||||
T Consensus 4 ~lYiHiPFC~~~C~yC------~f~----~~~~~~~---~-~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGT 69 (375)
T PRK05628 4 GVYVHVPFCATRCGYC------DFN----TYTAAEL---G-GGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGT 69 (375)
T ss_pred EEEEEeCCcCCcCCCC------CCC----ccccccc---c-cccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCc
Confidence 3699999999999999 885 2322210 0 00235789999999887544222 23458888 57999
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHH
Q 008466 191 FMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYED 270 (564)
Q Consensus 191 pt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~ 270 (564)
||.++++.+.++++.+.+.++ ....+++|+|++|++++++.++.|+++||+||+|||||++++
T Consensus 70 Ps~l~~~~l~~ll~~i~~~~~-----------------~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~ 132 (375)
T PRK05628 70 PSLLGAEGLARVLDAVRDTFG-----------------LAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPH 132 (375)
T ss_pred cccCCHHHHHHHHHHHHHhCC-----------------CCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHH
Confidence 999999999999999988765 124568999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHH
Q 008466 271 VARDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELW 349 (564)
Q Consensus 271 vL~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~ 349 (564)
+|+.+||+|+.+++.++++.++++||+ +++|||+|+||||.+++.++++.+. +++|+++++|++.+.|||++++.+
T Consensus 133 ~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~---~l~~~~i~~y~l~~~~gT~l~~~~ 209 (375)
T PRK05628 133 VLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAAL---EAGVDHVSAYALIVEDGTALARRV 209 (375)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHH---hcCCCEEEeeeeecCCCChHHHHh
Confidence 999999999999999999999999999 8899999999999999999999997 688999999999999999999999
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 350 KTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 350 ~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
++|.+..+++++..+++..+.+. +..+|+.+|++++||+ .|.+|+|+.
T Consensus 210 ~~g~~~~~~~~~~~~~~~~~~~~-----------------l~~~G~~~ye~s~fa~-----~~~~~~hn~ 257 (375)
T PRK05628 210 RRGELPAPDDDVLADRYELADAR-----------------LSAAGFDWYEVSNWAR-----PGGECRHNL 257 (375)
T ss_pred hcCCCCCCChHHHHHHHHHHHHH-----------------HHHcCCCeeeeccccC-----CCcccccch
Confidence 99999988888888888776665 4788999999999996 577899986
|
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=377.87 Aligned_cols=246 Identities=20% Similarity=0.166 Sum_probs=214.3
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHc--CCCCCcEEEE-EEcCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRL--GHSVDKVEFI-LMGGTF 191 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~--g~~~~kve~I-~~GGTp 191 (564)
+|+|||||+.+|.|| +|+. .... ....+.|.+.+.++++.... .....++++| ||||||
T Consensus 64 lYiHIPFC~~~C~yC------~f~~----~~~~--------~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTP 125 (449)
T PRK09058 64 LYIHIPFCRTHCTFC------GFFQ----NAWN--------PEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTP 125 (449)
T ss_pred EEEEeCCcCCcCCCC------CCcC----cCCc--------hhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCcc
Confidence 699999999999999 8851 1111 12357799999999886542 1123468988 589999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHH
Q 008466 192 MSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDV 271 (564)
Q Consensus 192 t~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~v 271 (564)
|.|+++++.++++.|++.++. ..+++||+|+||++++++.++.|+++|||||||||||+++++
T Consensus 126 s~L~~~~l~~ll~~i~~~~~l-----------------~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~v 188 (449)
T PRK09058 126 TALSAEDLARLITALREYLPL-----------------APDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQV 188 (449)
T ss_pred ccCCHHHHHHHHHHHHHhCCC-----------------CCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHH
Confidence 999999999999999988761 345799999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCC-cEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHH
Q 008466 272 ARDTNRGHTVAAVADCFCLAKDAGF-KVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWK 350 (564)
Q Consensus 272 L~~i~Rght~~~~~~ai~~lr~~G~-~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~ 350 (564)
|+.+||+|+.+++.++++.++++|| .+++|||+||||||.+++.++++.+. +++|++|++|+|.+.|||+|+++++
T Consensus 189 Lk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~---~l~~~~is~y~L~~~pgT~l~~~~~ 265 (449)
T PRK09058 189 RRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVR---DLGLDGVDLYALNLLPGTPLAKAVE 265 (449)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHH---hcCCCEEEEeccccCCCCHHHHHHH
Confidence 9999999999999999999999996 58899999999999999999999998 6889999999999999999999999
Q ss_pred cCCCCCC-CHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 351 TGRYRNY-PPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 351 ~G~~~~~-~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
+|.+.++ ++++.++|+..+.+. |..+|+.+|++++||++.- ..|+|+.
T Consensus 266 ~g~l~~~~~~~~~~~my~~~~~~-----------------L~~~Gy~~yeis~far~~~----~~~~~n~ 314 (449)
T PRK09058 266 KGKLPPPATPAERADMYAYGVEF-----------------LAKAGWRQLSNSHWARTTR----ERNLYNL 314 (449)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHH-----------------HHHCCCeEEeeeeeecCCc----cccHHHH
Confidence 9999877 899999999888876 4789999999999997521 2477775
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=360.76 Aligned_cols=236 Identities=22% Similarity=0.275 Sum_probs=198.1
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFM 192 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt 192 (564)
++|+|||||+.+|.|| +|. ++... ....+.|.+.+.++++.........++++| |+||||+
T Consensus 2 ~lYiHiPFC~~~C~yC------~f~----~~~~~--------~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs 63 (350)
T PRK08446 2 LLYIHIPFCESKCGYC------AFN----SYENK--------HDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPS 63 (350)
T ss_pred eEEEEeCCccCcCCCC------CCc----CcCCC--------cccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccc
Confidence 3699999999999999 885 22111 123467999998887743211123458888 5789999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++++.++++.|.+.+. ...++|+|++|++++++.++.|+++|++||||||||+++++|
T Consensus 64 ~l~~~~l~~ll~~i~~~~~-------------------~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L 124 (350)
T PRK08446 64 TVSAKFYEPIFEIISPYLS-------------------KDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKL 124 (350)
T ss_pred cCCHHHHHHHHHHHHHhcC-------------------CCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 9999999999999987632 346999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
+.+||+|+.+++.++++.++++||. +++|||+|+||||.+++.++++.+. +++|++|++|++++.|||++++...+
T Consensus 125 ~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~---~l~~~~is~y~L~~~~gT~l~~~~~~ 201 (350)
T PRK08446 125 KFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAK---ELPINHLSAYSLTIEENTPFFEKNHK 201 (350)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHH---hcCCCEEEeccceecCCChhHHhhhc
Confidence 9999999999999999999999997 6789999999999999999999998 68899999999999999999998776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
+ +++++ ++..+.+. +..+|+.+|++++||+ |.+|+|+.
T Consensus 202 ~----~~~~~---~~~~~~~~-----------------l~~~Gy~~yeis~fa~------~~~~~hn~ 239 (350)
T PRK08446 202 K----KDDEN---LAKFFIEQ-----------------LEELGFKQYEISNFGK------NYQCKHNL 239 (350)
T ss_pred C----CCHHH---HHHHHHHH-----------------HHHCCCcEEEeehhhC------cchhhhHH
Confidence 5 34443 44433443 4678999999999995 78899986
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=357.57 Aligned_cols=239 Identities=16% Similarity=0.241 Sum_probs=201.0
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+|+|||||+.+|.|| +|. ++.+..+ .....+.|++.+.+++... + ..++++| ||||||+.
T Consensus 9 lYiHiPFC~~kC~yC------~f~----~~~~~~~-----~~~~~~~~~~~l~~ei~~~--~--~~~~~tiy~GGGTPs~ 69 (353)
T PRK05904 9 LYIHIPFCQYICTFC------DFK----RILKTPQ-----TKKIFKDFLKNIKMHIKNF--K--IKQFKTIYLGGGTPNC 69 (353)
T ss_pred EEEEeCCccCcCCCC------CCe----eccCCcc-----cHHHHHHHHHHHHHHHHHh--c--CCCeEEEEECCCcccc
Confidence 699999999999999 886 2222111 0123455666666554322 1 2458888 58999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~ 273 (564)
|+++.++++++.+++.+. .+.+||+|++|+.++++.++.|+++|++||+|||||+++++|+
T Consensus 70 L~~~~l~~ll~~i~~~~~-------------------~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~ 130 (353)
T PRK05904 70 LNDQLLDILLSTIKPYVD-------------------NNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILK 130 (353)
T ss_pred CCHHHHHHHHHHHHHhcC-------------------CCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 999999999999987653 3468999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 274 DTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 274 ~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
.|||+|+.+++.++++.++++||. +++|||+|+||||.+++.++++.+. +++|+++++|++.+.|||+++++.
T Consensus 131 ~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~---~l~p~~is~y~L~~~~gT~l~~~~--- 204 (353)
T PRK05904 131 QLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFIL---KHKINHISFYSLEIKEGSILKKYH--- 204 (353)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHH---hcCCCEEEEEeeEecCCChHhhcC---
Confidence 999999999999999999999997 8899999999999999999999987 688999999999999999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCcccceee
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 420 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir~ 420 (564)
..+++++..+++..+... +...|+.+|+++|||+. .|.+|+|++.
T Consensus 205 --~~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~yeisnfa~~----~~~~~~hn~~ 249 (353)
T PRK05904 205 --YTIDEDKEAEQLNYIKAK-----------------FNKLNYKRYEVSNWTNN----FKYISKHNLA 249 (353)
T ss_pred --CCCChHHHHHHHHHHHHH-----------------HHHcCCcEEechhhcCC----CCccccchHh
Confidence 136778888888777665 47899999999999962 5889999973
|
|
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=357.78 Aligned_cols=242 Identities=24% Similarity=0.390 Sum_probs=209.2
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFM 192 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt 192 (564)
++|+|||||+.+|.|| +|. ++.+.. ...++|.+.+.++++... ....+++| |+||||+
T Consensus 5 ~lYiHiPfC~~~C~yC------~~~----~~~~~~--------~~~~~y~~~l~~Ei~~~~---~~~~~~~i~~gGGtps 63 (374)
T PRK05799 5 SLYIHIPFCKQKCLYC------DFP----SYSGKE--------DLMMEYIKALSKEIRNST---KNKKIKSIFIGGGTPT 63 (374)
T ss_pred EEEEEeCCccCCCCCC------CCC----cccCCc--------chHHHHHHHHHHHHHhhc---CCCceeEEEECCCccc
Confidence 4699999999999999 775 222221 234668888888875321 12348888 5799999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++.++.+++.+.. +. ....+++|+|++|++++++.++.|+++|++||+|||||+++++|
T Consensus 64 ~l~~~~l~~L~~~i~~-~~-----------------~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L 125 (374)
T PRK05799 64 YLSLEALEILKETIKK-LN-----------------KKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLL 125 (374)
T ss_pred CCCHHHHHHHHHHHHh-CC-----------------CCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHH
Confidence 9999999988888754 43 12457999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
+.+||+|+.+++.++++.++++||+ +++|+|+|+||||.+++.++++.+. +++|++|++|++.+.|||++++++++
T Consensus 126 ~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~---~l~~~~is~y~l~~~pgT~l~~~~~~ 202 (374)
T PRK05799 126 KYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVV---ELNPEHISCYSLIIEEGTPFYNLYEN 202 (374)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHH---hcCCCEEEEeccEecCCCHHHHHHhc
Confidence 9999999999999999999999997 7899999999999999999999997 58899999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
|.+.+++.++..+++..+.+. +..+|+.+|++++||+ .|.+|+|+.
T Consensus 203 g~~~~~~~~~~~~~~~~~~~~-----------------l~~~Gy~~ye~~~fa~-----~~~~~~hn~ 248 (374)
T PRK05799 203 GKLKLPDEEEEREMYHYTIEF-----------------LKEKGYHQYEISNFAK-----PGKECRHNL 248 (374)
T ss_pred CCCCCCChHHHHHHHHHHHHH-----------------HHHcCCcEEeeeeeEC-----CCcchhhHH
Confidence 999999999999998877765 4788999999999996 477888886
|
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=354.87 Aligned_cols=241 Identities=21% Similarity=0.217 Sum_probs=205.4
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+|+|||||+.+|.|| +|. ++.... ...+.|.+.+.+++..........++++| |+||||+.
T Consensus 3 lYiHiPFC~~~C~yC------~f~----~~~~~~--------~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~ 64 (360)
T TIGR00539 3 LYIHIPFCENKCGYC------DFN----SYENKS--------GPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNT 64 (360)
T ss_pred EEEEeCCCcCcCCCC------CCc----ccCcCc--------cCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhc
Confidence 599999999999999 785 221110 23567999999887643221223458888 57999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~ 273 (564)
++++.+.++++.|.+.++. ...+++|+|++|+.++++.++.|+++||+||+|||||+++++|+
T Consensus 65 l~~~~l~~ll~~i~~~~~~-----------------~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~ 127 (360)
T TIGR00539 65 LSVEAFERLFESIYQHASL-----------------SDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLL 127 (360)
T ss_pred CCHHHHHHHHHHHHHhCCC-----------------CCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHH
Confidence 9999999999999887651 24579999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 274 DTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 274 ~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
.+||+|+.+++.++++.++++||. +++|+|+|+||||.+++.++++.+. +++|+++++|+++|.|||+++++.++
T Consensus 128 ~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~---~l~~~~is~y~l~~~~gT~~~~~~~~- 203 (360)
T TIGR00539 128 FLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAK---ELPINHLSAYALSVEPNTNFEKNAKK- 203 (360)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHH---ccCCCEEEeecceEcCCChhhhhhhc-
Confidence 999999999999999999999996 7899999999999999999999998 68899999999999999999987654
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
.+++++..+++..+... +..+|+.+|++++||++ |.+|+|+.
T Consensus 204 ---~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~yei~~fa~~-----~~~~~hn~ 245 (360)
T TIGR00539 204 ---LPDDDSCAHFDEVVREI-----------------LEGFGFKQYEVSNYAKA-----GYQVKHNL 245 (360)
T ss_pred ---CcCHHHHHHHHHHHHHH-----------------HHHcCCceeehhhhcCC-----CHHHHHHH
Confidence 46788888888776665 46689999999999964 67788886
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=357.39 Aligned_cols=243 Identities=21% Similarity=0.220 Sum_probs=205.8
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFM 192 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt 192 (564)
++|+|||||+.+|.|| +|...+ ..+. ...++|.+.+.++++.........++++| ||||||+
T Consensus 8 ~lYiHiPFC~~~C~yC------~f~~~~--~~~~---------~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs 70 (378)
T PRK05660 8 SLYIHIPWCVQKCPYC------DFNSHA--LKGE---------VPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPS 70 (378)
T ss_pred EEEEEeCCccCcCCCC------CCeecC--CCCc---------CCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccc
Confidence 4699999999999999 885211 1111 12366999988887643222223468888 5899999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++.+.++++.+.+.++. ....++|+|++|++++.+.++.|+++|++||+|||||+++++|
T Consensus 71 ~l~~~~l~~ll~~l~~~~~~-----------------~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L 133 (378)
T PRK05660 71 LFSAEAIQRLLDGVRARLPF-----------------APDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKL 133 (378)
T ss_pred cCCHHHHHHHHHHHHHhCCC-----------------CCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHH
Confidence 99999999999999988762 2457999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
+.++|+|+.+++.++++.++++||+ +++|+|+|+||||.+++.++++.+. +++|++|++|++.+.|||++++. .
T Consensus 134 ~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~---~l~p~~is~y~l~~~~gT~l~~~--~ 208 (378)
T PRK05660 134 KRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAI---ALNPPHLSWYQLTIEPNTLFGSR--P 208 (378)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH---hcCCCeEEeeccEeccCCccccc--C
Confidence 9999999999999999999999998 5799999999999999999999998 68899999999999999999873 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
...+++++..+++..+... +..+|+.+|++++||+ .|.+|+|+.
T Consensus 209 --~~~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~yei~~fa~-----~~~~~~hn~ 252 (378)
T PRK05660 209 --PVLPDDDALWDIFEQGHQL-----------------LTAAGYQQYETSAYAK-----PGYQCQHNL 252 (378)
T ss_pred --CCCcCHHHHHHHHHHHHHH-----------------HHHcCCcEeecccccC-----CChhHHHHH
Confidence 2346778888888877765 4789999999999996 467898886
|
|
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=356.49 Aligned_cols=245 Identities=20% Similarity=0.178 Sum_probs=206.4
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFM 192 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt 192 (564)
++|+|||||..+|.|| +|.... +....+ ...++|++.+.++++.....+...++++| ||||||+
T Consensus 21 ~lYiHIPFC~~~C~yC------~f~~~~--~~~~~~-------~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs 85 (394)
T PRK08898 21 SLYVHFPWCVRKCPYC------DFNSHE--WKDGGA-------IPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPS 85 (394)
T ss_pred EEEEEeCCccCcCCCC------CCcccc--cCCCCc-------cCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcC
Confidence 4699999999999999 886221 111100 12477999999988755322223469999 4799999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++++.++++.|++.++. ....++|+|++|++++.+.|+.|+++|++||||||||+++++|
T Consensus 86 ~L~~~~L~~ll~~i~~~~~~-----------------~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L 148 (394)
T PRK08898 86 LLSAAGLDRLLSDVRALLPL-----------------DPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL 148 (394)
T ss_pred CCCHHHHHHHHHHHHHhCCC-----------------CCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH
Confidence 99999999999999998862 2447999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
+.+||+|+.+++.++++.+++.+..+++|||+||||||.+++.++++.+. +++|++|++|++.+.|||++++..
T Consensus 149 ~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~~~~~~~l~~~~---~l~p~~is~y~l~~~~gT~l~~~~--- 222 (394)
T PRK08898 149 KALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPGQTLDEALADVETAL---AFGPPHLSLYHLTLEPNTLFAKFP--- 222 (394)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEeeeEECCCChhhhcc---
Confidence 99999999999999999999987679999999999999999999999997 688999999999999999998742
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
...++.++..+|...+... |..+|+.+|++++||+ .|.+|+|++
T Consensus 223 -~~~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~ye~~~fa~-----~~~~~~hn~ 266 (394)
T PRK08898 223 -PALPDDDASADMQDWIEAR-----------------LAAAGYAHYEVSAYAK-----PGRQCRHNL 266 (394)
T ss_pred -CCCCChHHHHHHHHHHHHH-----------------HHHcCCchhccccccC-----CCccchhHH
Confidence 1346777778887766554 5789999999999996 477788887
|
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=350.64 Aligned_cols=244 Identities=21% Similarity=0.341 Sum_probs=211.6
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+|+|||||+.+|.|| +|.. ..... ...++|.+.+.++++..... ....+++| |+|||||.
T Consensus 4 lYihiPfC~~~C~yC------~~~~---~~~~~---------~~~~~y~~~l~~Ei~~~~~~-~~~~i~~i~~gGGtpt~ 64 (377)
T PRK08599 4 AYIHIPFCEHICYYC------DFNK---VFIKN---------QPVDEYLDALIKEMNTYAIR-PFDKLKTIYIGGGTPTA 64 (377)
T ss_pred EEEEeCCcCCCCCCC------CCee---eccCc---------cCHHHHHHHHHHHHHHhhhc-CCCceeEEEeCCCCccc
Confidence 599999999999999 7751 11111 13467999998888654322 23468888 57999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~ 273 (564)
++++++.++++.+++.++. ..+++||+|++|++++++.++.|+++|++||+|||||+++++|+
T Consensus 65 l~~~~l~~ll~~i~~~~~~-----------------~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~ 127 (377)
T PRK08599 65 LSAEQLERLLTAIHRNLPL-----------------SGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLK 127 (377)
T ss_pred CCHHHHHHHHHHHHHhCCC-----------------CCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 9999999999999987751 23468999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 274 DTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 274 ~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
.++|+|+.+++.++++.++++||. +++|+|+|+||||.+++.++++.+. +++|+++++|++.+.|||++++++.+|
T Consensus 128 ~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~---~l~~~~i~~y~l~~~pgT~~~~~~~~g 204 (377)
T PRK08599 128 KIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKAL---ALDIPHYSAYSLILEPKTVFYNLMRKG 204 (377)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHH---ccCCCEEeeeceeecCCChhHHHHhcC
Confidence 999999999999999999999998 6789999999999999999999997 688999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
.+..++++...+++..+.+. +..+|+.+|++++|++ .|.+|+|+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~-----------------l~~~Gy~~~~~~~fa~-----~~~~~~~n~ 249 (377)
T PRK08599 205 KLRLPGEDLEAEMYEYLMDE-----------------MEAHGFHQYEISNFAK-----PGFESRHNL 249 (377)
T ss_pred CCCCCCHHHHHHHHHHHHHH-----------------HHHcCCcEeeeeeeeC-----CChHHHHHH
Confidence 99888899988888877765 4788999999999996 467788875
|
|
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=344.30 Aligned_cols=241 Identities=20% Similarity=0.247 Sum_probs=201.5
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+|+|||||+.+|.|| +|. +..+.. ....+.|++.+.++++.........++.+| |||||||.
T Consensus 42 lYvHIPFC~~~C~yC------~~~----~~~~~~-------~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~ 104 (430)
T PRK08208 42 LYIHIPFCEMRCGFC------NLF----TRTGAD-------AEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTL 104 (430)
T ss_pred EEEEeCCccCcCCCC------CCc----cccCCc-------cchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCcccc
Confidence 599999999999999 775 222211 123467999998888754321233457777 68999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~ 273 (564)
++++++.+|++.|.+.++.. ..++++|+|++|++++++.|+.|+++|++||+|||||+++++|+
T Consensus 105 l~~~~l~~Ll~~i~~~~~~~----------------~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~ 168 (430)
T PRK08208 105 LNAAELEKLFDSVERVLGVD----------------LGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELH 168 (430)
T ss_pred CCHHHHHHHHHHHHHhCCCC----------------CCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 99999999999998877510 12468999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 274 DTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 274 ~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
.++|+|+.+++.++++.++++||. +++|||+|+||||.+++.++++.+. +++|++|++|++.+.|||+|++...
T Consensus 169 ~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~---~l~~~~is~y~L~~~~~T~l~~~~~-- 243 (430)
T PRK08208 169 ALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQAL---VYRPEELFLYPLYVRPLTGLGRRAR-- 243 (430)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEEccccccCCCccchhcC--
Confidence 999999999999999999999998 4689999999999999999999998 6889999999999999999987542
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
.+.++..+|+..+.+. +..+|+.+|++++||++ |.+|+++.
T Consensus 244 ----~~~~~~~~m~~~~~~~-----------------L~~~Gy~~yei~~far~-----~~~~~~~~ 284 (430)
T PRK08208 244 ----AWDDQRLSLYRLARDL-----------------LLEAGYTQTSMRMFRRN-----DAPDKGAP 284 (430)
T ss_pred ----CCHHHHHHHHHHHHHH-----------------HHHcCCeEEeecceecC-----CcccCCCC
Confidence 3568888888877765 57899999999999975 44455554
|
|
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=336.31 Aligned_cols=286 Identities=21% Similarity=0.233 Sum_probs=223.7
Q ss_pred HHHHhCCC-----CCCCHHHHHHhCChhhHHHhhhHHhcC-CCCccCCceeEEeecCCCCCccccCCCCCCcCCCCCCCC
Q 008466 62 ACRKYGLA-----RAPKLVEMIAALPETDREALLPKLRAK-PVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDS 135 (564)
Q Consensus 62 ~~~~y~~~-----~~p~~~~i~~~~~~~~~~~l~~~l~~k-p~rt~sgv~vvavmt~p~~cphIPfC~~~C~YC~~~~~~ 135 (564)
+.++|..+ +||....+-..+.+.... ..+... |-+.. ++|+|||||+.+|.||
T Consensus 9 ~~~~~~~~~p~~~~yp~~~~~~~~~~~~~~~---~~~~~~~~~~~~------------~LYvHIPfC~~~C~yC------ 67 (453)
T PRK13347 9 LLRYFDAAVPRYTSYPTAPEFSPAFGEDTYR---EWLRQIGPEEPV------------SLYLHVPFCRSLCWFC------ 67 (453)
T ss_pred HHHHcCCCCCCCCCCCCccccCCCCCHHHHH---HHHHhccCCCce------------EEEEEeCCccccCCCC------
Confidence 66677543 678777665555444322 223222 22222 3699999999999999
Q ss_pred CCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCC-CCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCC
Q 008466 136 DFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGH-SVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGH 213 (564)
Q Consensus 136 ~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~-~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~ 213 (564)
+|... .... ....+.|++.+.+++++....+ ...+|..| |+||||+.++++++.++++.|.+.++.
T Consensus 68 ~~~~~---~~~~--------~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~- 135 (453)
T PRK13347 68 GCNTI---ITQR--------DAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLMAALRDAFDF- 135 (453)
T ss_pred CCcCc---Cccc--------cchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHHHHHHHhCCC-
Confidence 77511 1111 1235679999999888544322 23468888 689999999999999999999987751
Q ss_pred CchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q 008466 214 TSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKD 293 (564)
Q Consensus 214 ~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~ 293 (564)
....++++|++|++++++.++.|+++|++||+|||||+++++|+.+||+|+.+++.++++.+++
T Consensus 136 ----------------~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~ 199 (453)
T PRK13347 136 ----------------APEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRA 199 (453)
T ss_pred ----------------CCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 2447999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc--CCCCCCCHHHHHHHHHHHH
Q 008466 294 AGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT--GRYRNYPPEQLVDIVARIL 370 (564)
Q Consensus 294 ~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~--G~~~~~~~ee~~~~~~~~~ 370 (564)
+||+ +++|||+||||||.+++.++++.+. +++|++|++|.+...|+ ....++ +....+++++..+++..+.
T Consensus 200 ~G~~~v~~dli~GlPgqt~e~~~~tl~~~~---~l~p~~i~~y~l~~~p~---~~~~~~~~~~~~lp~~~~~~~~~~~~~ 273 (453)
T PRK13347 200 AGFESINFDLIYGLPHQTVESFRETLDKVI---ALSPDRIAVFGYAHVPS---RRKNQRLIDEAALPDAEERLRQARAVA 273 (453)
T ss_pred cCCCcEEEeEEEeCCCCCHHHHHHHHHHHH---hcCCCEEEEeccccccc---hhhHHhcCCccCCcCHHHHHHHHHHHH
Confidence 9997 7899999999999999999999998 68899999999985554 333332 5667788999999988877
Q ss_pred HhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhcc-----ccCCccccee
Q 008466 371 AMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMD-----DLGLKCRDVR 419 (564)
Q Consensus 371 ~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~-----~~g~~c~~ir 419 (564)
+. |..+|+.+|++++||++.-. ..|.-|+|+.
T Consensus 274 ~~-----------------L~~~Gy~~~~~~~far~~~~~~~a~~~g~l~r~~~ 310 (453)
T PRK13347 274 DR-----------------LLAAGYVPIGLDHFALPDDELAIAQREGRLHRNFQ 310 (453)
T ss_pred HH-----------------HHHCCCEEEeccceeCCCchhhHHHhcCccccccc
Confidence 76 47899999999999975432 2344477775
|
|
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=313.88 Aligned_cols=206 Identities=22% Similarity=0.379 Sum_probs=188.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHH---cCC-Ce
Q 008466 184 FILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLS---YGC-TR 259 (564)
Q Consensus 184 ~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~---~G~-~r 259 (564)
.+|+|||||.+|.+.+.++++.+.+ + +.+++|++++|||+++++.++.|++ +|+ ++
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~-~-------------------~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~ 140 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALS-Y-------------------DDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVW 140 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhC-C-------------------CCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEE
Confidence 3368999999999999999988865 2 2568999999999999988877775 599 78
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
|++|+||+++++|+.|||+|+.+++.++++.++++|+++++|+|+||||||.+++.++++.+. +++|+++++|++.|
T Consensus 141 i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~---~l~~d~i~i~~l~~ 217 (302)
T TIGR01212 141 VELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVS---LLDVDGIKIHPLHV 217 (302)
T ss_pred EEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHH---hcCCCEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999997 68899999999999
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCC---CcchHHHHHHhhccccC
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGV---EKGNLRELALARMDDLG 412 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~---~~~~~~~~a~~~~~~~g 412 (564)
.|||+|++++++|.|.+++.+++++.+..+++.+|+++.++|+..|+|..+..+|. .+..+.+...+.|+.+|
T Consensus 218 ~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~Rl~~~~~~~~~l~~~~~~~k~~~l~~i~~~l~~~~ 293 (302)
T TIGR01212 218 VKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHRISGDAPRETLIAPEWCKNKWEIMNKISEELERRG 293 (302)
T ss_pred cCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEEEecCCCCccceEcccccccHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999998777765 55667777788888776
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=294.35 Aligned_cols=266 Identities=21% Similarity=0.317 Sum_probs=211.7
Q ss_pred ceeEEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHH-HHHcCCCCCcE
Q 008466 104 IAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQ-LKRLGHSVDKV 182 (564)
Q Consensus 104 v~vvavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~-l~~~g~~~~kv 182 (564)
|++-+.+++|++--- +-.+.|+||+.....||..++ ..+..+-+..... ..+. ....|.
T Consensus 26 v~ld~GF~CPNRDGt--i~rGGCtFC~~~g~~d~~~~~-----------------~~~i~~Q~~~q~~~~~kK-~~~~ky 85 (312)
T COG1242 26 VTLDGGFSCPNRDGT--IGRGGCTFCSVAGSGDFAGQP-----------------KISIAEQFKEQAERMHKK-WKRGKY 85 (312)
T ss_pred EeccCCCCCCCCCCc--ccCCceeeecCCCCCccccCc-----------------ccCHHHHHHHHHHHHHHh-hcCCcE
Confidence 555666665543221 112789999765544554211 1122222222222 2222 233442
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcC---CCe
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYG---CTR 259 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G---~~r 259 (564)
-..|--.|.|.-|.+.+++..+... + .+++++++|.||||++.++.|+.|.++. -.|
T Consensus 86 iaYFQ~~TNTyApvevLre~ye~aL---~-----------------~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vW 145 (312)
T COG1242 86 IAYFQAYTNTYAPVEVLREMYEQAL---S-----------------EAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVW 145 (312)
T ss_pred EEEEeccccccCcHHHHHHHHHHHh---C-----------------cCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEE
Confidence 2235689999999988766554332 2 3578999999999999999999999886 479
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
|++|+||.++++++.|||||+.+.+.+|++++|+.||+|++|+|.||||||.+++++|++.+. .+++++|++|+|.+
T Consensus 146 vELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~---~~~v~GIKlH~Lhv 222 (312)
T COG1242 146 VELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVA---ELGVDGIKLHPLHV 222 (312)
T ss_pred EEeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHH---hcCCceEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999886 68899999999999
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHH---hCCCcchHHHHHHhhccccC
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVT---SGVEKGNLRELALARMDDLG 412 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~---~G~~~~~~~~~a~~~~~~~g 412 (564)
.+||+|.++|.+|+++.++.+++++++.++++.+||.+.++|+..|.|.+... |...+.++-|-+.+.|+.+|
T Consensus 223 vkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le~lpp~vviHRitgd~pr~~li~P~W~~~kw~vln~I~~eL~rrg 298 (312)
T COG1242 223 VKGTPMEKMYEKGRLKFLSLEEYVELVCDQLEHLPPEVVIHRITGDAPRDTLIAPLWSLNKWEVLNAIDKELERRG 298 (312)
T ss_pred ecCChHHHHHHcCCceeccHHHHHHHHHHHHHhCCcceEEEEecCCCCccceecchhhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999998665 44556667788888888887
|
|
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=324.47 Aligned_cols=237 Identities=18% Similarity=0.242 Sum_probs=198.0
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCC-CCCcEEEE-EEcCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGH-SVDKVEFI-LMGGTFM 192 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~-~~~kve~I-~~GGTpt 192 (564)
+|+|||||+.+|.|| +|. +..+.. ....+.|.+.+.++++...... ...+|++| |+||||+
T Consensus 52 lYiHiPFC~~~C~yC------~~~----~~~~~~-------~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~ 114 (455)
T TIGR00538 52 LYVHIPFCHKACYFC------GCN----VIITRQ-------KHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPT 114 (455)
T ss_pred EEEEeCCccCcCCCC------CCC----ccCCCC-------cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcC
Confidence 699999999999999 775 222111 1124568888888877543222 12468888 6899999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++++.++++.+.+.++ + ...+++++|++|+.++++.++.|+++|++||+||+||+++++|
T Consensus 115 ~l~~~~l~~ll~~i~~~~~--~---------------~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l 177 (455)
T TIGR00538 115 YLSPEQISRLMKLIRENFP--F---------------NADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQ 177 (455)
T ss_pred CCCHHHHHHHHHHHHHhCC--C---------------CCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHH
Confidence 9999999999999998775 1 2346899999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCC-hhHHHHH
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGT-GLYELWK 350 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT-~L~~~~~ 350 (564)
+.+||+|+.+++.++++.++++||+ +.+|+|+|+||||.+++.++++.+. +++|++|++|++.+.|++ +..+.
T Consensus 178 ~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~---~l~~~~is~y~L~~~p~~~~~~~~-- 252 (455)
T TIGR00538 178 QAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVA---ELNPDRLAVFNYAHVPWVKPAQRK-- 252 (455)
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHH---hcCCCEEEEecCccccchhHHHhc--
Confidence 9999999999999999999999997 7799999999999999999999998 688999999999998875 33322
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhh
Q 008466 351 TGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALAR 407 (564)
Q Consensus 351 ~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~ 407 (564)
.+....+++++..+++..+.+. +..+|+.+|++++||++.
T Consensus 253 ~~~~~~~~~e~~~~~~~~~~~~-----------------L~~~Gy~~~~~~~fa~~~ 292 (455)
T TIGR00538 253 IPEAALPSAEEKLDILQETIAF-----------------LTEAGYQFIGMDHFAKPD 292 (455)
T ss_pred ccccCCCCHHHHHHHHHHHHHH-----------------HHHCCCEEEeccceeCCC
Confidence 3455567899999998877765 478899999999999753
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=321.76 Aligned_cols=248 Identities=18% Similarity=0.201 Sum_probs=200.6
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCC-CCcEEEE-EEcCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHS-VDKVEFI-LMGGTFM 192 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~-~~kve~I-~~GGTpt 192 (564)
+|+|||||+.+|.|| +|.. ..+.. ....+.|.+.+.+++........ ..++++| |+||||+
T Consensus 52 LYvHIPFC~~~C~yC------~~~~----~~~~~-------~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs 114 (453)
T PRK09249 52 LYVHIPFCRSLCYYC------GCNK----IITRD-------HEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPT 114 (453)
T ss_pred EEEEeCCccccCCCC------CCcc----cCCCC-------cchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccc
Confidence 699999999999999 7751 11111 12346799999888875443222 3458888 6899999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++++.++++.+.+.++. ...+++|+|++|+.++++.++.|+++||+||+||+||+++++|
T Consensus 115 ~l~~~~l~~ll~~l~~~~~~-----------------~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L 177 (453)
T PRK09249 115 FLSPEQLRRLMALLREHFNF-----------------APDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQ 177 (453)
T ss_pred cCCHHHHHHHHHHHHHhCCC-----------------CCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 99999999999999887751 2457999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCC-cEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGF-KVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~-~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
+.++|+|+.+++.++++.++++|| .+++|+|+|+||||.+++.++++.+. +++|++|++|++.+.|++.... ...
T Consensus 178 ~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~---~l~~~~i~~y~l~~~p~~~~~~-~~~ 253 (453)
T PRK09249 178 KAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVL---ELRPDRLAVFNYAHVPWLFKAQ-RKI 253 (453)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHH---hcCCCEEEEccCccchhhhhHh-cCC
Confidence 999999999999999999999999 58899999999999999999999998 6889999999998665543221 111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
+....++.++..+++..+.+. +..+|+.+|++++|++++.. ...|+|+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~ye~s~far~~~~--~~~~~~n~ 302 (453)
T PRK09249 254 DEADLPSPEEKLAILQQTIET-----------------LTEAGYQYIGMDHFALPDDE--LAIAQREG 302 (453)
T ss_pred CcccCCCHHHHHHHHHHHHHH-----------------HHHCCCEEEeccceeCCCch--HHHHHHhC
Confidence 334567888888888877775 47889999999999974321 12377764
|
|
| >PRK08629 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=315.50 Aligned_cols=224 Identities=17% Similarity=0.181 Sum_probs=179.8
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+|+|||||.++|.|| +|+ ++...+ ...+.|.+.+.++++..... ..++++| |||||||.
T Consensus 55 LYvHIPFC~~~C~yC------~f~----~~~~~~--------~~~~~Y~~~L~~Ei~~~~~~--~~~~~siy~GGGTPs~ 114 (433)
T PRK08629 55 LYAHVPFCHTLCPYC------SFH----RFYFKE--------DKARAYFISLRKEMEMVKEL--GYDFESMYVGGGTTTI 114 (433)
T ss_pred EEEEeCCccCcCCCC------CCc----CcCCCc--------chHHHHHHHHHHHHHHHHhc--CCceEEEEECCCcccc
Confidence 699999999999999 886 222211 23567999999988754321 2458988 58999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~ 273 (564)
+ ++.+.++++.+++.++ ..+||+|++|++++++.|+.|+++ |+||||||||+++++|+
T Consensus 115 l-~~~L~~ll~~i~~~f~--------------------i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk 172 (433)
T PRK08629 115 L-EDELAKTLELAKKLFS--------------------IKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILK 172 (433)
T ss_pred C-HHHHHHHHHHHHHhCC--------------------CceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHH
Confidence 7 6889999999887664 248999999999999999999999 99999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHc--CCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHH
Q 008466 274 DTNRGHTVAAVADCFCLAKDA--GFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWK 350 (564)
Q Consensus 274 ~i~Rght~~~~~~ai~~lr~~--G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~ 350 (564)
.|||+|+..+..++++.++.+ .|. +++|||+||||||.+++.++++.+. +++|++|++|++.+.|+|.+. .
T Consensus 173 ~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~GlPgqT~e~~~~~l~~~~---~l~p~~is~y~L~~~~~t~~~---~ 246 (433)
T PRK08629 173 MVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIFNFPGQTDEVLQHDLDIAK---RLDPRQITTYPLMKSHQTRKS---V 246 (433)
T ss_pred HcCCCCChhHHHHHHHHHHHHhccCCeEEEEEEccCCCCCHHHHHHHHHHHH---hCCCCEEEEccceeccCchhh---h
Confidence 999999875555555444443 244 7789999999999999999999998 688999999999999999743 4
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHH
Q 008466 351 TGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELAL 405 (564)
Q Consensus 351 ~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~ 405 (564)
++....+++++..++...+...+ . |+.+++..+|++
T Consensus 247 ~~~~~~p~~d~~~~~~~~~~~~l------------------~-Gy~~~s~~~f~~ 282 (433)
T PRK08629 247 KGSLGASQKDNERQYYQIINELF------------------G-QYNQLSAWAFSK 282 (433)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHH------------------C-CCeEecccccCC
Confidence 66677778877777766555442 3 898877777764
|
|
| >TIGR01210 conserved hypothetical protein TIGR01210 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=241.12 Aligned_cols=166 Identities=20% Similarity=0.339 Sum_probs=145.4
Q ss_pred EEEEcC---CCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCC-e
Q 008466 184 FILMGG---TFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCT-R 259 (564)
Q Consensus 184 ~I~~GG---Tpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~-r 259 (564)
.+|.+| .|+.+|++.+.++++.+.+. + ...+|++|+|||+++++.|+.|+++|++ +
T Consensus 72 kif~sgsf~D~~~~~~~~~~~i~~~l~~~-~-------------------~~~~i~~esrpd~i~~e~L~~l~~aG~~~~ 131 (313)
T TIGR01210 72 KIFTSGSFLDDREVPKETRNYIFEKIAQR-D-------------------NLKEVVVESRPEFIDEEKLEELRKIGVNVE 131 (313)
T ss_pred EEecCCCcCCcCcCCHHHHHHHHHHHHhc-C-------------------CcceEEEEeCCCcCCHHHHHHHHHcCCCEE
Confidence 346666 55678999988888887652 1 2358999999999999999999999998 8
Q ss_pred EEEccCCCCHHHHH-hcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC----CCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 260 LEIGVQSTYEDVAR-DTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN----VGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 260 vsiGvQS~~d~vL~-~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPg----et~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
|+||+||+++++|+ .+|||||.+++.+|++.++++||.+.++||+|+|+ |+.+++.++++.+. .++ +++++
T Consensus 132 v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~---~l~-~~vs~ 207 (313)
T TIGR01210 132 VAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLLFKPPFLSEKEAIADMISSIRKCI---PVT-DTVSI 207 (313)
T ss_pred EEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCChhhhHHHHHHHHHHHH---hcC-CcEEE
Confidence 99999999999995 89999999999999999999999999999999996 45566777888876 466 99999
Q ss_pred eeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 335 YPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 335 y~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
|+++|.|||+|+++|++|.|+|+..+..++.+.++...-
T Consensus 208 ~~l~v~~gT~l~~~~~~G~~~pp~lws~~e~l~e~~~~~ 246 (313)
T TIGR01210 208 NPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVLKEAKKIG 246 (313)
T ss_pred ECCEEeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999998889999888887543
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes. |
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=228.80 Aligned_cols=192 Identities=17% Similarity=0.183 Sum_probs=153.7
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHH-cCCCCCcEEEE-
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKR-LGHSVDKVEFI- 185 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~-~g~~~~kve~I- 185 (564)
+++.++++||| +|+||.. +..+.+ .+..+-.++..++..+.+ .| +..+
T Consensus 195 ~~i~tSRGCp~------~C~FC~~---------~~~~~~----------~R~rs~e~Vv~Ei~~l~~~~g-----v~~~~ 244 (497)
T TIGR02026 195 AVPNFARGCPF------TCNFCSQ---------WKFWRR----------YRHRDPKKFVDEIEWLVRTHG-----VGFFI 244 (497)
T ss_pred eeeeccCCCCC------CCCCCCC---------CCCCce----------eecCCHHHHHHHHHHHHHHcC-----CCEEE
Confidence 34455678996 9999932 111111 233444555555555543 34 5556
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC--CHHHHHHHHHcCCCeEEEc
Q 008466 186 LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC--LGPHLRQMLSYGCTRLEIG 263 (564)
Q Consensus 186 ~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i--~~e~L~~L~~~G~~rvsiG 263 (564)
|.+++|+ ++.++..+|++.|.+.-+ -.+.|.+++|++.+ +++.++.|+++||++|++|
T Consensus 245 ~~Dd~f~-~~~~~~~~l~~~l~~~~~-------------------l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iG 304 (497)
T TIGR02026 245 LADEEPT-INRKKFQEFCEEIIARNP-------------------ISVTWGINTRVTDIVRDADILHLYRRAGLVHISLG 304 (497)
T ss_pred EEecccc-cCHHHHHHHHHHHHhcCC-------------------CCeEEEEecccccccCCHHHHHHHHHhCCcEEEEc
Confidence 5678876 477778888888765321 12578899999988 8999999999999999999
Q ss_pred cCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCC
Q 008466 264 VQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGT 343 (564)
Q Consensus 264 vQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT 343 (564)
+||+++++|+.++|+++.+++.++++.++++||.+.+++|+|+||||.+++.++++++. +++|+++.++.++|.|||
T Consensus 305 iES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~---~l~~~~~~~~~~tP~PGT 381 (497)
T TIGR02026 305 TEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLL---DWDPDQANWLMYTPWPFT 381 (497)
T ss_pred cccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHH---HcCCCceEEEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998 578999999999999999
Q ss_pred hhHHHHHcC
Q 008466 344 GLYELWKTG 352 (564)
Q Consensus 344 ~L~~~~~~G 352 (564)
+|++..++.
T Consensus 382 ~l~~~~~~~ 390 (497)
T TIGR02026 382 SLFGELSDR 390 (497)
T ss_pred HHHHHHHhh
Confidence 999976543
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-23 Score=224.14 Aligned_cols=193 Identities=17% Similarity=0.195 Sum_probs=149.6
Q ss_pred eEEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE
Q 008466 106 VVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI 185 (564)
Q Consensus 106 vvavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I 185 (564)
.+.++| +++||| +|.|| ++ ++.+.+.. .+..+-.+++.++..+.+... .++.|
T Consensus 197 ~~~i~t-sRGCp~------~C~FC------~~---~~~~~g~~--------~r~rs~e~V~~Ei~~~~~~~~---~~~~i 249 (472)
T TIGR03471 197 YISLYT-GRGCPS------KCTFC------LW---PQTVGGHR--------YRTRSAESVIEEVKYALENFP---EVREF 249 (472)
T ss_pred eEEEEe-cCCCCC------CCCCC------CC---CccCCCCc--------eEeCCHHHHHHHHHHHHHhcC---CCcEE
Confidence 344555 567995 99999 32 22232221 133344445554444544321 25666
Q ss_pred -EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEcc
Q 008466 186 -LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGV 264 (564)
Q Consensus 186 -~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGv 264 (564)
|.+++|+ .+.+++.+|++.+.+. .+.|.++++.+ ++++.++.|+++||++|++|+
T Consensus 250 ~f~Dd~f~-~~~~~~~~l~~~l~~~----------------------~i~~~~~~~~~-~~~e~l~~l~~aG~~~v~iGi 305 (472)
T TIGR03471 250 FFDDDTFT-DDKPRAEEIARKLGPL----------------------GVTWSCNARAN-VDYETLKVMKENGLRLLLVGY 305 (472)
T ss_pred EEeCCCCC-CCHHHHHHHHHHHhhc----------------------CceEEEEecCC-CCHHHHHHHHHcCCCEEEEcC
Confidence 5677775 5667777888777541 13577777765 899999999999999999999
Q ss_pred CCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCCh
Q 008466 265 QSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 265 QS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~ 344 (564)
||+++++|+.++|+++.+++.++++.++++|+.+..++|+|+||||.+++.++++.+. +++++.+.++.++|.|||+
T Consensus 306 ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~---~l~~~~~~~~~l~P~PGT~ 382 (472)
T TIGR03471 306 ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAK---ELNPHTIQVSLAAPYPGTE 382 (472)
T ss_pred CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHH---hcCCCceeeeecccCCCcH
Confidence 9999999999999999999999999999999999999999999999999999999987 5789999999999999999
Q ss_pred hHHHHHcC
Q 008466 345 LYELWKTG 352 (564)
Q Consensus 345 L~~~~~~G 352 (564)
|++..++.
T Consensus 383 l~~~~~~~ 390 (472)
T TIGR03471 383 LYDQAKQN 390 (472)
T ss_pred HHHHHHHC
Confidence 99876543
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=218.12 Aligned_cols=207 Identities=17% Similarity=0.214 Sum_probs=158.9
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-E
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-L 186 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~ 186 (564)
+.+...++||| +|+||. .+. ..|. .+..+..+++.++..+.+.| ++.| |
T Consensus 140 ~~i~isrGCp~------~CsfC~---------~~~-~~g~---------~r~r~~e~I~~Ei~~l~~~g-----~~ei~l 189 (414)
T TIGR01579 140 AFIKVQDGCNF------FCSYCI---------IPF-ARGR---------SRSVPMEAILKQVKILVAKG-----YKEIVL 189 (414)
T ss_pred EEEEeccCcCC------CCCCCc---------eee-ecCC---------CccCCHHHHHHHHHHHHHCC-----CceEEE
Confidence 44455678996 999992 222 2221 24566777777777777766 4444 5
Q ss_pred EcCCCCCCCH-----HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHcC--CC
Q 008466 187 MGGTFMSLPA-----DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSYG--CT 258 (564)
Q Consensus 187 ~GGTpt~l~~-----~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~G--~~ 258 (564)
.|.+++.... .++.+|++.+.+. + ....+.+. ++|+.++++.++.|+++| |.
T Consensus 190 ~~~~~~~y~~d~~~~~~l~~Ll~~l~~~-~-------------------~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~ 249 (414)
T TIGR01579 190 TGVNLGSYGDDLKNGTSLAKLLEQILQI-P-------------------GIKRIRLSSIDPEDIDEELLEAIASEKRLCP 249 (414)
T ss_pred eeEccchhccCCCCCCcHHHHHHHHhcC-C-------------------CCcEEEEeCCChhhCCHHHHHHHHhcCccCC
Confidence 6766665542 3466666666531 1 11234444 599999999999999987 89
Q ss_pred eEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHH--cCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 259 RLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKD--AGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~--~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
.+++|+||+++++|+.|||+|+.+++.++++.+++ .|+.+..|||+|+||||.+++.++++++. +++++++.+++
T Consensus 250 ~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i~---~~~~~~~~~~~ 326 (414)
T TIGR01579 250 HLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMVK---EIEFSHLHIFP 326 (414)
T ss_pred CeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHHH---hCCCCEEEeee
Confidence 99999999999999999999999999999999999 89999999999999999999999999997 57899999999
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
++|.|||+++++. ...+.++.-+.+..+.++
T Consensus 327 ~sp~pGT~~~~~~-----~~v~~~~~~~r~~~l~~~ 357 (414)
T TIGR01579 327 YSARPGTPASTMK-----DKVPETIKKERVKRLKEL 357 (414)
T ss_pred cCCCCCCchhhCC-----CCCCHHHHHHHHHHHHHH
Confidence 9999999998753 235666666666555443
|
This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. |
| >PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=219.22 Aligned_cols=208 Identities=17% Similarity=0.182 Sum_probs=155.1
Q ss_pred EEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-
Q 008466 107 VAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI- 185 (564)
Q Consensus 107 vavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I- 185 (564)
.|.+....+||| +|+|| .. + ...|+ .+..+..+++.++..+...| ++-|
T Consensus 169 ~a~i~isrGCp~------~CsFC------~i---p-~~~G~---------~rsrs~e~Vv~Ei~~l~~~g-----~~eI~ 218 (467)
T PRK14329 169 SAFVSIMRGCDN------MCTFC------VV---P-FTRGR---------ERSRDPESILNEVRDLFAKG-----YKEVT 218 (467)
T ss_pred EEEEEeccCccc------CCCCC------cc---c-cccCC---------cccCCHHHHHHHHHHHHHCC-----CeEEE
Confidence 445555577885 99999 32 2 22332 24456677777777777766 3333
Q ss_pred EEcCCCCCCC----------HHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHH
Q 008466 186 LMGGTFMSLP----------ADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLS 254 (564)
Q Consensus 186 ~~GGTpt~l~----------~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~ 254 (564)
|.|.+.+.+. ...+.++++.+.+... ...+.+. .+|+.++++.++.|++
T Consensus 219 l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~--------------------~~~ir~~~~~p~~l~~ell~~m~~ 278 (467)
T PRK14329 219 LLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVP--------------------DMRIRFSTSHPKDMTDDVLEVMAK 278 (467)
T ss_pred EEeecccccccccCCccccccccHHHHHHHHHhcCC--------------------CcEEEEecCCcccCCHHHHHHHHh
Confidence 4454433221 2345666666554321 2356666 4899999999999999
Q ss_pred c--CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCC
Q 008466 255 Y--GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRAD 330 (564)
Q Consensus 255 ~--G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd 330 (564)
+ ||.+|+||+||+++++|+.|||++|.+++.++++.+++. ++.+..|||+|+||||.+++.++++++. +++++
T Consensus 279 ~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~~i~~d~IvGfPgET~edf~~tl~~i~---~l~~~ 355 (467)
T PRK14329 279 YDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDCGISTDMIAGFPTETEEDHQDTLSLME---EVGYD 355 (467)
T ss_pred CCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEeEEEeCCCCCHHHHHHHHHHHH---hhCCC
Confidence 7 899999999999999999999999999999999999997 5668889999999999999999999997 57899
Q ss_pred eEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 331 GLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 331 ~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
++.++++++.|||++++.+++. .+.+...+....+.+
T Consensus 356 ~~~v~~~sp~pGT~~~~~~~~~----v~~~~~~~R~~~l~~ 392 (467)
T PRK14329 356 FAFMFKYSERPGTYAARKLEDD----VPEEVKKRRLNEIIA 392 (467)
T ss_pred eEeeeEecCCCCChhhhhCCCC----CCHHHHHHHHHHHHH
Confidence 9999999999999999755432 556666555554444
|
|
| >PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=216.83 Aligned_cols=203 Identities=16% Similarity=0.143 Sum_probs=149.6
Q ss_pred CCCccc-cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEc---
Q 008466 114 HRCPHI-ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMG--- 188 (564)
Q Consensus 114 ~~cphI-PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~G--- 188 (564)
+.+.|| ++|+.+|+|| .++ . ..|. .+..+..+++.++..+...|. +.| +.|
T Consensus 139 ~~~l~isrGC~~~CsfC------~~p---~-~~g~---------~~sr~~e~Iv~Ei~~l~~~G~-----keI~l~g~~~ 194 (440)
T PRK14334 139 SAHLTIMRGCNHHCTYC------IVP---T-TRGP---------EVSRHPDLILRELELLKAAGV-----QEVTLLGQNV 194 (440)
T ss_pred EEEEEeccCCCCCCcCC------Ccc---h-hcCC---------CccCCHHHHHHHHHHHHHCCC-----eEEEEEeccc
Confidence 358898 9999999999 332 1 2222 122334444444455666663 333 333
Q ss_pred -----CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHc--CCCeE
Q 008466 189 -----GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSY--GCTRL 260 (564)
Q Consensus 189 -----GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~--G~~rv 260 (564)
|++... .+..|++.+.+ .. ...+.+.+ +|+.++++.++.|+++ ||+++
T Consensus 195 ~~yG~d~~~~~---~~~~Ll~~l~~-~~--------------------i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l 250 (440)
T PRK14334 195 NSYGVDQPGFP---SFAELLRLVGA-SG--------------------IPRVKFTTSHPMNFTDDVIAAMAETPAVCEYI 250 (440)
T ss_pred cccccCCCCcC---CHHHHHHHHHh-cC--------------------CcEEEEccCCcccCCHHHHHHHHhcCcCCCeE
Confidence 333222 34455655532 11 11345543 8999999999999995 59999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc--EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK--VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~--v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
+||+||+++++|+.|||+|+.+++.++++.++++|+. +..|||+|+||||.+++.++++++. +++++++.++++.
T Consensus 251 ~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~---~l~~~~i~~f~ys 327 (440)
T PRK14334 251 HLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSLYD---EVGYDSAYMFIYS 327 (440)
T ss_pred EeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHHHH---hcCCCEeeeeEee
Confidence 9999999999999999999999999999999999866 5689999999999999999999987 5789999999999
Q ss_pred ecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 339 VIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 339 v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
+.|||+++++. ...++++..+.+..+.+.
T Consensus 328 p~pGT~~~~~~-----~~v~~~~~~~r~~~l~~~ 356 (440)
T PRK14334 328 PRPGTPSYKHF-----QDLPREVKTERLQRLIEK 356 (440)
T ss_pred CCCCChhHhcc-----CCCCHHHHHHHHHHHHHH
Confidence 99999998753 236677776666655554
|
|
| >PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-22 Score=215.93 Aligned_cols=208 Identities=18% Similarity=0.269 Sum_probs=159.5
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-E
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-L 186 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~ 186 (564)
+.+....+||| +|+|| ..+ .+.|. .+..+..+++.+...+...| ++-| +
T Consensus 151 a~l~isrGC~~------~CsFC---------~ip-~~rG~---------~rsr~~e~Vv~Ei~~l~~~G-----~~ei~l 200 (445)
T PRK14340 151 AFVPVMRGCNN------MCAFC---------VVP-FTRGR---------ERSHPFASVLDEVRALAEAG-----YREITL 200 (445)
T ss_pred EEEEeccCCCC------CCCCC---------Ccc-cccCC---------CcCCCHHHHHHHHHHHHHCC-----CeEEEE
Confidence 44555678985 99999 222 22332 24566777887777787766 4444 6
Q ss_pred EcCCCCCCCHH----HHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHc--CCCe
Q 008466 187 MGGTFMSLPAD----YRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSY--GCTR 259 (564)
Q Consensus 187 ~GGTpt~l~~~----~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~--G~~r 259 (564)
.|.+++++..+ .+.++++.|.+.. ....+.+. .+|+.++++.++.|+++ ||.+
T Consensus 201 ~~~~~~~y~d~~~~~~l~~Ll~~l~~~~--------------------~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~ 260 (445)
T PRK14340 201 LGQNVNSYSDPEAGADFAGLLDAVSRAA--------------------PEMRIRFTTSHPKDISESLVRTIAARPNICNH 260 (445)
T ss_pred eecccchhhccCCCchHHHHHHHHhhcC--------------------CCcEEEEccCChhhcCHHHHHHHHhCCCCCCe
Confidence 67777655322 3455555554311 22356666 49999999999999997 7999
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
+.||+||++|++|+.|||++|.+++.++++.++++ |+.+..|||+|+||||.+++.++++++. +++++++.++++
T Consensus 261 l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~tl~~~~---~~~~~~~~~f~~ 337 (445)
T PRK14340 261 IHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRATLSLME---EVRFDSAFMFYY 337 (445)
T ss_pred EEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHHHHHHHH---hcCCCEEeeEEe
Confidence 99999999999999999999999999999999999 9999999999999999999999999987 578999999999
Q ss_pred eecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 338 LVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 338 ~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
.+.|||++++.+. + ..+++...+....+.+.
T Consensus 338 sp~pGT~~~~~~~-~---~v~~~~~~~R~~~l~~l 368 (445)
T PRK14340 338 SVRPGTLAARTLP-D---DVPEEVKKRRLQEIIDL 368 (445)
T ss_pred cCCCCChhhhhCC-C---CCCHHHHHHHHHHHHHH
Confidence 9999999986332 1 25666666666555443
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=204.48 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=147.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
+..+++.....+.+.| ++.| |.||+...++.+++.++++.|++..+ +.++ .
T Consensus 71 s~eei~~~~~~~~~~g-----~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~---------------------l~i~--~ 122 (323)
T PRK07094 71 SPEEILECAKKAYELG-----YRTIVLQSGEDPYYTDEKIADIIKEIKKELD---------------------VAIT--L 122 (323)
T ss_pred CHHHHHHHHHHHHHCC-----CCEEEEecCCCCCCCHHHHHHHHHHHHccCC---------------------ceEE--E
Confidence 3445555444555555 4445 56776556788888888888765421 2233 3
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFR 319 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~ 319 (564)
++...+++.++.|+++|++++.+|+||+++++++.++++++.++++++++.++++|+.+..++|+|+||||.+++.++++
T Consensus 123 ~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 123 SLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred ecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 320 EFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 320 ~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
.+. +++++.+.++++.|.|||||++. .+.+.++...+++.+...+|.
T Consensus 203 ~l~---~l~~~~v~~~~~~P~pgTpl~~~------~~~~~~~~~~~~a~~R~~lp~ 249 (323)
T PRK07094 203 FLK---ELDLDMIGIGPFIPHPDTPLKDE------KGGSLELTLKVLALLRLLLPD 249 (323)
T ss_pred HHH---hCCCCeeeeeccccCCCCCcccC------CCCCHHHHHHHHHHHHHhCcC
Confidence 887 68899999999999999999863 357899999999999998874
|
|
| >PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=213.40 Aligned_cols=182 Identities=16% Similarity=0.127 Sum_probs=142.0
Q ss_pred hcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCH------HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcc
Q 008466 158 RYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPA------DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATK 231 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~------~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~ 231 (564)
+..+..+++.++..+...|. -+..+.|.++++... ..+..|++.|.+. .
T Consensus 239 Rsr~~e~Ii~Ei~~l~~~G~----keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~-~-------------------- 293 (509)
T PRK14327 239 RSRRPEDIIQEVRHLARQGY----KEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKI-D-------------------- 293 (509)
T ss_pred eeCCHHHHHHHHHHHHHCCC----cEEEEEeeccccCcccccccchHHHHHHHHHHhC-C--------------------
Confidence 45666777777777877763 133456776665432 2355666665431 1
Q ss_pred cEEEEEE-eeCCCCCHHHHHHHHHcC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCC
Q 008466 232 CIGMTIE-TRPDYCLGPHLRQMLSYG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDL 306 (564)
Q Consensus 232 ~~eitiE-trPd~i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GL 306 (564)
...+.+. .+|+.++++.++.|+++| |++++||+||+++++|+.|||+||.+++.++++.++++ |+.+.+|+|+|+
T Consensus 294 i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGf 373 (509)
T PRK14327 294 IPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTTDIIVGF 373 (509)
T ss_pred CceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEeeeEEEeC
Confidence 1134444 489999999999999999 68999999999999999999999999999999999998 566778999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 307 PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
||||.+++.+|++.+. +++++.+.++++.+.|||+++++. ...+.+..-+.+..+.+.
T Consensus 374 PgET~edf~~Tl~~v~---~l~~d~~~~f~ysprpGT~a~~~~-----~~vp~~vk~~R~~~l~~l 431 (509)
T PRK14327 374 PNETDEQFEETLSLYR---EVGFDHAYTFIYSPREGTPAAKMK-----DNVPMEVKKERLQRLNAL 431 (509)
T ss_pred CCCCHHHHHHHHHHHH---HcCCCeEEEeeeeCCCCCchHhCc-----CCCCHHHHHHHHHHHHHH
Confidence 9999999999999987 578999999999999999998753 235667666666555544
|
|
| >PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-22 Score=213.48 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=141.3
Q ss_pred hcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHH----HHHHHHHHHHHHhcCCCchhhHHHhhhcccCCccc
Q 008466 158 RYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPAD----YRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKC 232 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~----~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~ 232 (564)
+..+..+++.+...+...| ++.| +.|++++..+.+ .+.++++.+.+.. ..
T Consensus 173 rsr~~e~V~~Ei~~l~~~g-----~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~--------------------g~ 227 (437)
T PRK14331 173 RSRRLGSILDEVQWLVDDG-----VKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEID--------------------GV 227 (437)
T ss_pred ccCCHHHHHHHHHHHHHCC-----CeEEEEeeeccccccCCCCCCCHHHHHHHHhcCC--------------------Cc
Confidence 4456667777767777665 4445 678888775432 3445555544311 11
Q ss_pred EEEEEE-eeCCCCCHHHHHHHHHc--CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCC
Q 008466 233 IGMTIE-TRPDYCLGPHLRQMLSY--GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLP 307 (564)
Q Consensus 233 ~eitiE-trPd~i~~e~L~~L~~~--G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLP 307 (564)
..+.+. .+|..++++.++.|+++ ||.+|+||+||+++++|+.|||++|.+++.++++.++++ |+.+.+|||+|+|
T Consensus 228 ~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~P 307 (437)
T PRK14331 228 ERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFP 307 (437)
T ss_pred cEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECC
Confidence 234444 38999999999999998 599999999999999999999999999999999999998 9999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
|||.+++.+|++++. +++++.+.++++++.|||+++++.. ..++++..+....+.+
T Consensus 308 gET~ed~~~tl~~l~---~l~~~~i~~f~~sp~pGT~~~~~~~-----~~~~~~~~~r~~~l~~ 363 (437)
T PRK14331 308 TETEEDFEETLDVLK---KVEFEQVFSFKYSPRPGTPAAYMEG-----QEPDEVKTKRMNRLLE 363 (437)
T ss_pred CCCHHHHHHHHHHHH---hcCcceeeeeEecCCCCcchhhCCC-----CCCHHHHHHHHHHHHH
Confidence 999999999999987 5789999999999999999987631 2456666555554444
|
|
| >PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=211.34 Aligned_cols=208 Identities=16% Similarity=0.205 Sum_probs=157.8
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-E
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-L 186 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~ 186 (564)
|.+.-..+||| +|+|| ..|. ..|+ .+..+..+++.+...+...| ++-| +
T Consensus 156 a~l~isrGC~~------~CsFC---------~ip~-~rG~---------~rsr~~e~Iv~Ei~~l~~~G-----~kei~l 205 (449)
T PRK14332 156 AFVTIMRGCNN------FCTFC---------VVPY-TRGR---------ERSRDPKSIVREIQDLQEKG-----IRQVTL 205 (449)
T ss_pred EEEEecCCcCC------CCCCC---------Cccc-ccCC---------cccCCHHHHHHHHHHHHHCC-----CeEEEE
Confidence 33444578985 99999 2332 2332 24566677777777777766 4444 6
Q ss_pred EcCCCCCCCHH--HHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcC--CCeEE
Q 008466 187 MGGTFMSLPAD--YRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYG--CTRLE 261 (564)
Q Consensus 187 ~GGTpt~l~~~--~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G--~~rvs 261 (564)
.|.+++....+ .+.++++.+.+. .....+.+.+ +|+.++++.++.|+++| |.+++
T Consensus 206 ~~~~~~~y~~~~~~l~~Ll~~l~~~--------------------~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~ 265 (449)
T PRK14332 206 LGQNVNSYKEQSTDFAGLIQMLLDE--------------------TTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIH 265 (449)
T ss_pred ecccCCcccCCcccHHHHHHHHhcC--------------------CCcceEEEECCCcccCCHHHHHHHHhCCCccceEE
Confidence 78888877543 233444433221 1122455554 99999999999999998 99999
Q ss_pred EccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 262 IGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 262 iGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
||+||+++++|+.|||+||.+++.++++.++++ |+.+..|||+|+||||.+++.++++++. +++++.+.+|++.+
T Consensus 266 lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~v~---~l~~~~~~~f~ys~ 342 (449)
T PRK14332 266 LPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAVVR---EVQFDMAFMFKYSE 342 (449)
T ss_pred ECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHHHH---hCCCCEEEEEEecC
Confidence 999999999999999999999999999999998 5677789999999999999999999987 68899999999999
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
.|||+.++.+.+ .+++++..+.+..+.++
T Consensus 343 ~~GT~a~~~~~~----~v~~~~~~~R~~~l~~~ 371 (449)
T PRK14332 343 REGTMAKRKLPD----NVPEEVKSARLTKLVDL 371 (449)
T ss_pred CCCChhHHhCcC----CCCHHHHHHHHHHHHHH
Confidence 999999854332 26677777776666554
|
|
| >PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-22 Score=216.10 Aligned_cols=205 Identities=16% Similarity=0.167 Sum_probs=151.3
Q ss_pred CccccC-CCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 116 CPHIAT-TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 116 cphIPf-C~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+++|++ |+++|+|| .++ ...|. .+..+..+++.++..+...|. ..| +.|.++..
T Consensus 151 ~i~i~~GC~~~CsFC------~ip----~~rG~---------~rsr~~e~V~~Ei~~l~~~g~-----kei~l~~~~~~~ 206 (448)
T PRK14333 151 WVNVIYGCNERCTYC------VVP----SVRGK---------EQSRTPEAIRAEIEELAAQGY-----KEITLLGQNIDA 206 (448)
T ss_pred EEEhhcCCCCCCCCC------cee----cccCC---------CcccCHHHHHHHHHHHHHCCC-----cEEEEEecccch
Confidence 555666 66799999 332 22332 123445566666666666553 333 44433322
Q ss_pred ------------CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHc--CCC
Q 008466 194 ------------LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSY--GCT 258 (564)
Q Consensus 194 ------------l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~--G~~ 258 (564)
.....+..+++.+.+. . ....+++. .+|+.++++.++.|+++ ||.
T Consensus 207 yg~d~~~~~p~~~~~~~l~~Ll~~i~~~-~-------------------~~~rir~~~~~p~~~~~eli~~~~~~~~~~~ 266 (448)
T PRK14333 207 YGRDLPGTTPEGRHQHTLTDLLYYIHDV-E-------------------GIERIRFATSHPRYFTERLIKACAELPKVCE 266 (448)
T ss_pred hcCCCCCccccccccccHHHHHHHHHhc-C-------------------CCeEEEECCCChhhhhHHHHHHHhcCCcccc
Confidence 2223566666666541 1 22346664 58999999999999996 599
Q ss_pred eEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 259 RLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
+++||+||+++++|+.|||+||.+++.++++.++++ |+.+..|+|+|+||||.+++.++++++. +++++.+.+++
T Consensus 267 ~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i~i~~d~IvGfPgET~edf~~tl~~l~---~~~~~~~~~~~ 343 (448)
T PRK14333 267 HFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDASISADAIVGFPGETEAQFENTLKLVE---EIGFDQLNTAA 343 (448)
T ss_pred cccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEEeeEEEECCCCCHHHHHHHHHHHH---HcCCCEEeeee
Confidence 999999999999999999999999999999999999 6778899999999999999999999997 57899999999
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
++|.|||+++++. ...+.+..-+....+.++
T Consensus 344 ~sp~pGT~~~~~~-----~~v~~~~~~~R~~~l~~~ 374 (448)
T PRK14333 344 YSPRPGTPAALWD-----NQLSEEVKSDRLQRLNHL 374 (448)
T ss_pred eecCCCCchhhCC-----CCCCHHHHHHHHHHHHHH
Confidence 9999999998752 125666666666555543
|
|
| >PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=210.16 Aligned_cols=184 Identities=13% Similarity=0.126 Sum_probs=141.4
Q ss_pred hcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCC-----CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCccc
Q 008466 158 RYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSL-----PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKC 232 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l-----~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~ 232 (564)
+..+..+++.++..+.+.|. -+.+|.|.++... ....+..+++.+.+. . ..
T Consensus 167 rsr~~e~Iv~Ei~~l~~~g~----kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~-~-------------------~~ 222 (434)
T PRK14330 167 KSRPMEDILEEVEKLAKQGY----REVTFLGQNVDAYGKDLKDGSSLAKLLEEASKI-E-------------------GI 222 (434)
T ss_pred ccCCHHHHHHHHHHHHHCCC----cEEEEEEecccccccCCCCCccHHHHHHHHHhc-C-------------------Cc
Confidence 45677788877777777663 1333556555432 223455555544321 1 11
Q ss_pred -EEEEEEeeCCCCCHHHHHHHHHcC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCC
Q 008466 233 -IGMTIETRPDYCLGPHLRQMLSYG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLP 307 (564)
Q Consensus 233 -~eitiEtrPd~i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLP 307 (564)
.-+....+|+.++++.++.|+++| |.+++||+||+++++|+.|||+|+.+++.++++.+++. |+.+..|+|+|+|
T Consensus 223 ~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvGfP 302 (434)
T PRK14330 223 ERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSDIIVGFP 302 (434)
T ss_pred eEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECC
Confidence 123345799999999999999998 79999999999999999999999999999999999997 7788899999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
|||.+++.++++++. +++++++.++++++.|||+++++++++ .+.++..+.+..+.+.
T Consensus 303 gET~edf~~tl~fi~---~~~~~~~~~~~~sp~pGT~~~~~~~~~----v~~~~~~~r~~~l~~~ 360 (434)
T PRK14330 303 TETEEDFMETVDLVE---KAQFERLNLAIYSPREGTVAWKYYKDD----VPYEEKVRRMQYLLNL 360 (434)
T ss_pred CCCHHHHHHHHHHHH---hcCCCEEeeeeccCCCCChhhhhCccC----CCHHHHHHHHHHHHHH
Confidence 999999999999987 578999999999999999999865443 4566665555544443
|
|
| >PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=211.29 Aligned_cols=207 Identities=15% Similarity=0.186 Sum_probs=153.4
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEE
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILM 187 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~ 187 (564)
+.+....+||| +|+|| ..+.. .|. .+..+..+++.++..+...|. -+.+|.
T Consensus 159 a~v~isrGCp~------~CsFC---------~ip~~-rG~---------~rsr~~e~Vv~Ei~~l~~~g~----~ei~l~ 209 (502)
T PRK14326 159 AWVSISVGCNN------TCTFC---------IVPSL-RGK---------EKDRRPGDILAEVQALVDEGV----LEVTLL 209 (502)
T ss_pred EEEEEccCCCC------CCccC---------ceecc-CCC---------cccCCHHHHHHHHHHHHHCCC----ceEEEE
Confidence 44445678995 99999 23332 232 234555777777777777662 233456
Q ss_pred cCCCCCC-----CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcC--CCeE
Q 008466 188 GGTFMSL-----PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYG--CTRL 260 (564)
Q Consensus 188 GGTpt~l-----~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G--~~rv 260 (564)
|.++++. +...+.++++.+... .+ ...+.|+. .+|+.++++.|+.|+++| |.++
T Consensus 210 d~n~~~yG~d~~~~~~l~~Ll~~l~~i-~~-----------------l~~ir~~~-~~p~~~~~ell~~m~~~g~~~~~l 270 (502)
T PRK14326 210 GQNVNAYGVSFGDRGAFSKLLRACGEI-DG-----------------LERVRFTS-PHPAEFTDDVIEAMAETPNVCPQL 270 (502)
T ss_pred eecccccccCCCCHHHHHHHHHHHHhc-CC-----------------ccEEEEec-cChhhCCHHHHHHHHhcCCcCCcE
Confidence 7776653 334555555554321 10 01134432 599999999999999998 9999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
+||+||+++++|+.|||+|+.+++.++++.++++ |+.+..|||+|+||||.+++.++++++. +++++.+.++++.
T Consensus 271 ~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~~IvGfPgET~edf~~Tl~~i~---~~~~~~~~~f~~s 347 (502)
T PRK14326 271 HMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTDIIVGFPGETEEDFQATLDVVR---EARFSSAFTFQYS 347 (502)
T ss_pred EeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEEEEEECCCCCHHHHHHHHHHHH---HcCCCEEEEEeec
Confidence 9999999999999999999999999999999996 7788999999999999999999999987 5778999999999
Q ss_pred ecCCChhHHHHHcCCCCCCCHHHHHHHHHHHH
Q 008466 339 VIRGTGLYELWKTGRYRNYPPEQLVDIVARIL 370 (564)
Q Consensus 339 v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~ 370 (564)
+.|||+++++.. ..+.+...+.+..+.
T Consensus 348 p~pGT~~~~~~~-----~v~~~v~~~R~~~l~ 374 (502)
T PRK14326 348 KRPGTPAAEMEG-----QLPKAVVQERYERLV 374 (502)
T ss_pred CCCCChHHhCcC-----CCCHHHHHHHHHHHH
Confidence 999999997632 245555555554443
|
|
| >PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=210.13 Aligned_cols=206 Identities=17% Similarity=0.177 Sum_probs=155.5
Q ss_pred ecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcC
Q 008466 110 MSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGG 189 (564)
Q Consensus 110 mt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GG 189 (564)
+....+||| +|+|| ..+. ..|. .+..+..+++.+...+.+.|.. +.+|.|.
T Consensus 151 i~isrGCp~------~CsFC---------~~p~-~~G~---------~~sr~~e~Iv~Ei~~l~~~g~~----ei~l~d~ 201 (444)
T PRK14325 151 VSIMEGCDK------YCTFC---------VVPY-TRGE---------EVSRPVDDVLAEVAQLAEQGVR----EITLLGQ 201 (444)
T ss_pred EEhhhCCCC------CCCcc---------ccCc-ccCC---------cccCCHHHHHHHHHHHHHCCCc----EEEEEee
Confidence 333478996 99999 2222 2232 1245667777777777776631 2335666
Q ss_pred CCCCCC-------HHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcC--CCe
Q 008466 190 TFMSLP-------ADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYG--CTR 259 (564)
Q Consensus 190 Tpt~l~-------~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G--~~r 259 (564)
+++... ...+.++++.|.+. + ....+.+.+ +|+.++++.++.|+++| |.+
T Consensus 202 ~~~~y~~~~~~~~~~~l~~Ll~~l~~~-~-------------------~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~ 261 (444)
T PRK14325 202 NVNAYRGEGPDGEIADFAELLRLVAAI-D-------------------GIERIRYTTSHPRDFTDDLIEAYADLPKLVPF 261 (444)
T ss_pred ccccccCCCCCCCcchHHHHHHHHHhc-C-------------------CccEEEEccCCcccCCHHHHHHHHcCCcccCc
Confidence 665542 23566666665431 1 112355554 89999999999999986 999
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
++||+||+++++|+.|||+++.+++.++++.++++ |+.+..|||+|+||||.+++.++++++. +++++.+.++++
T Consensus 262 l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed~~~tl~~i~---~~~~~~~~~~~~ 338 (444)
T PRK14325 262 LHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSDFIVGFPGETDEDFEATMKLIE---DVGFDQSFSFIY 338 (444)
T ss_pred eeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHH---hcCCCeeeeeec
Confidence 99999999999999999999999999999999998 7788899999999999999999999987 578999999999
Q ss_pred eecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 338 LVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 338 ~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
.+.|||+++++. ...+.+...+....+.+.
T Consensus 339 sp~pGT~~~~~~-----~~v~~~~~~~r~~~l~~~ 368 (444)
T PRK14325 339 SPRPGTPAADLP-----DDVPEEVKKERLQRLQAL 368 (444)
T ss_pred cCCCCCchhhCC-----CCCCHHHHHHHHHHHHHH
Confidence 999999999762 235667766666655543
|
|
| >PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-21 Score=208.44 Aligned_cols=186 Identities=16% Similarity=0.138 Sum_probs=143.3
Q ss_pred cchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCH-------HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcc
Q 008466 159 YNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPA-------DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATK 231 (564)
Q Consensus 159 ~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~-------~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~ 231 (564)
..+..+++.++..+.+.|. -+.+|.|.++++... ..+.++++.|.+.... ...
T Consensus 180 sr~~e~Vv~Ei~~l~~~G~----~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~----------------~~~ 239 (455)
T PRK14335 180 SRDLDAILQEIDVLSEKGV----REITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEV----------------TDQ 239 (455)
T ss_pred cCCHHHHHHHHHHHHHCCC----eEEEEEeecccccccccccCCccCHHHHHHHHHHhhcc----------------cCC
Confidence 4456666666666777663 134467877776531 1355566665432210 011
Q ss_pred cEEEEE-EeeCCCCCHHHHHHHHHc--CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCC
Q 008466 232 CIGMTI-ETRPDYCLGPHLRQMLSY--GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDL 306 (564)
Q Consensus 232 ~~eiti-EtrPd~i~~e~L~~L~~~--G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GL 306 (564)
...+.+ .++|+.++++.++.|+++ ||++++||+||+++++|+.|||+++.+++.++++.++++ |+.+..|+|+|+
T Consensus 240 i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGf 319 (455)
T PRK14335 240 IRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTDILIGF 319 (455)
T ss_pred ceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC
Confidence 234554 469999999999999984 899999999999999999999999999999999999998 999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 307 PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
||||.+++.+|++++. +++++.+.+++++|.|||+++++- ...+.+...+....+.++
T Consensus 320 PgET~edf~~Tl~~i~---~l~~~~~~~~~~sp~pGT~~~~~~-----~~v~~~~k~~R~~~l~~~ 377 (455)
T PRK14335 320 PGETEEDFEQTLDLMR---EVEFDSAFMYHYNPREGTPAYDFP-----DRIPDEVKIARLQRVIAL 377 (455)
T ss_pred CCCCHHHHHHHHHHHH---hcCCCeEEEEEecCCCCCchhhCC-----CCCCHHHHHHHHHHHHHH
Confidence 9999999999999986 578999999999999999998742 136677776666655554
|
|
| >PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=207.29 Aligned_cols=209 Identities=16% Similarity=0.204 Sum_probs=157.8
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEE
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILM 187 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~ 187 (564)
|.+.-..+||| +|+|| ..+. ..|+ .+..+..+++.+...+.+.|. -+.++.
T Consensus 126 a~i~i~rGC~~------~CsFC---------~ip~-~rG~---------~rsrs~e~Iv~Ei~~l~~~G~----~ei~l~ 176 (418)
T PRK14336 126 ANVTIMQGCDN------FCTYC---------VVPY-RRGR---------EKSRSIAEIGCEVAELVRRGS----REVVLL 176 (418)
T ss_pred EEEEeccCCCC------CCccC---------Cccc-cCCC---------CccCCHHHHHHHHHHHHHCCC----eEEEEE
Confidence 33444578985 99999 2222 1232 245667777777777777662 234467
Q ss_pred cCCCCCCCH-----HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHc--CCCe
Q 008466 188 GGTFMSLPA-----DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSY--GCTR 259 (564)
Q Consensus 188 GGTpt~l~~-----~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~--G~~r 259 (564)
|++++.... ..+..+++.+.+ .. ....+.+. .+|+.++++.++.|+++ +|.+
T Consensus 177 ~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~-------------------~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~ 236 (418)
T PRK14336 177 GQNVDSYGHDLPEKPCLADLLSALHD-IP-------------------GLLRIRFLTSHPKDISQKLIDAMAHLPKVCRS 236 (418)
T ss_pred ecCccccccCCCCcccHHHHHHHHHh-cC-------------------CccEEEEeccChhhcCHHHHHHHHhcCccCCc
Confidence 888776432 235556665543 11 12346665 49999999999999996 4999
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
+++|+||+++++|+.|||+|+.+++.++++.++++ |+.+..|||+|+||||.+++.++++++. +++++.+.++++
T Consensus 237 l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~fi~---~~~~~~~~v~~y 313 (418)
T PRK14336 237 LSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLMA---DIGYDAIHVAAY 313 (418)
T ss_pred eecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHHHH---hcCCCEEEeeec
Confidence 99999999999999999999999999999999998 9999999999999999999999999986 578999999999
Q ss_pred eecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 338 LVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 338 ~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
.+.|||++++.+. + ..+.+...+....+.+.
T Consensus 314 sp~pGT~a~~~~~-~---~v~~~~k~~R~~~l~~~ 344 (418)
T PRK14336 314 SPRPQTVAARDMA-D---DVPVIEKKRRLKLIEDL 344 (418)
T ss_pred CCCCCChhHhhCc-c---CCCHHHHHHHHHHHHHH
Confidence 9999999996442 1 25666666665544443
|
|
| >TIGR00089 RNA modification enzyme, MiaB family | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=210.21 Aligned_cols=207 Identities=18% Similarity=0.239 Sum_probs=155.8
Q ss_pred EEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-
Q 008466 107 VAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI- 185 (564)
Q Consensus 107 vavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I- 185 (564)
.+.+...++||| +|+||. .+.. .|. .+..+..+++.++..+.+.| ++.|
T Consensus 140 ~~~i~~srGC~~------~CsfC~---------~~~~-~g~---------~r~r~~e~Vv~Ei~~l~~~g-----~~ei~ 189 (429)
T TIGR00089 140 RAFLKIQEGCDK------FCTYCI---------VPYA-RGR---------ERSRPPEDILEEVKELVSKG-----VKEIV 189 (429)
T ss_pred EEEEEHHhCcCC------CCCcCc---------eecc-cCC---------CCCCCHHHHHHHHHHHHHCC-----CceEE
Confidence 455556688996 999992 2222 221 24556667777777777766 3334
Q ss_pred EEcCCCCCCCH-----HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHcC--C
Q 008466 186 LMGGTFMSLPA-----DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSYG--C 257 (564)
Q Consensus 186 ~~GGTpt~l~~-----~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~G--~ 257 (564)
|.|.+++.... ..+.++++.+.+ .+ ....+.+. .+|+.++++.++.|+++| |
T Consensus 190 l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~-------------------g~~~i~~~~~~p~~i~~ell~~m~~~~~~~ 249 (429)
T TIGR00089 190 LLGQNVGAYGKDLKGETNLADLLRELSK-ID-------------------GIERIRFGSSHPDDVTDDLIELIAENPKVC 249 (429)
T ss_pred EEeeccccccCCCCCCcCHHHHHHHHhc-CC-------------------CCCEEEECCCChhhcCHHHHHHHHhCCCcc
Confidence 56766655421 245566665543 11 12245565 499999999999999995 9
Q ss_pred CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcC--CcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEe
Q 008466 258 TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAG--FKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G--~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
.++++|+||+++++|+.|||+|+.+++.++++.++++| +.+..|||+|+||||.+++.++++++. +++++++.++
T Consensus 250 ~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~---~~~~~~~~~~ 326 (429)
T TIGR00089 250 KHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLDLVE---EVKFDKLHSF 326 (429)
T ss_pred CceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHH---hcCCCEeecc
Confidence 99999999999999999999999999999999999998 778899999999999999999999997 5789999999
Q ss_pred eeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 336 PTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 336 ~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
++++.|||+++++.. ..+.+...+.+..+.+
T Consensus 327 ~~sp~pgT~~~~~~~-----~v~~~~~~~r~~~l~~ 357 (429)
T TIGR00089 327 IYSPRPGTPAADMKD-----QVPEEVKKERLERLIA 357 (429)
T ss_pred ccCCCCCCchhhCCC-----CCCHHHHHHHHHHHHH
Confidence 999999999987531 2456665555554443
|
This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. |
| >PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-21 Score=207.48 Aligned_cols=209 Identities=11% Similarity=0.114 Sum_probs=156.7
Q ss_pred EEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEE
Q 008466 107 VAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFIL 186 (564)
Q Consensus 107 vavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~ 186 (564)
.|.+....+||| +|+|| ..+. ..|+ .+..+..+++.++..+...|. -+.++
T Consensus 128 ~a~i~isrGC~~------~CsFC---------~ip~-~rG~---------~~sr~~e~I~~Ei~~l~~~G~----keI~l 178 (420)
T PRK14339 128 KSLVNISIGCDK------KCTYC---------IVPH-TRGK---------EISIPMDLILKEAEKAVNNGA----KEIFL 178 (420)
T ss_pred EEEEEecCCCCC------CCCcC---------Cccc-ccCC---------CCCCCHHHHHHHHHHHHHCCC----cEEEE
Confidence 466666788996 99999 2332 2332 123466777777777777663 13335
Q ss_pred EcCCCCCCCH--------HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHc--
Q 008466 187 MGGTFMSLPA--------DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSY-- 255 (564)
Q Consensus 187 ~GGTpt~l~~--------~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~-- 255 (564)
.|.+++.... ..+.++++.+.+ +. ....+.+. ++|+.++++.|+.|+++
T Consensus 179 ~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~-~~-------------------g~~~ir~~s~~p~~~~~ell~~~~~~~~ 238 (420)
T PRK14339 179 LGQNVNNYGKRFSSEHEKVDFSDLLDKLSE-IE-------------------GLERIRFTSPHPLHMDDKFLEEFAKNPK 238 (420)
T ss_pred eeeccccccCCCcCCcccccHHHHHHHHhc-CC-------------------CccEEEECCCChhhcCHHHHHHHHcCCC
Confidence 6666654322 235556555542 11 11234554 69999999999999998
Q ss_pred CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEE
Q 008466 256 GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLK 333 (564)
Q Consensus 256 G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~ 333 (564)
||..++||+||+++++|+.|||+++.+++.++++.++++ |+.+..|+|+|+||||.+++.++++++. +++++++.
T Consensus 239 ~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~---~l~~~~~~ 315 (420)
T PRK14339 239 ICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSISTDIIVGFPGESDKDFEDTMDVLE---KVRFEQIF 315 (420)
T ss_pred ccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHH---hcCCCEEe
Confidence 599999999999999999999999999999999999998 7788899999999999999999999986 57889999
Q ss_pred EeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 334 iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
++++++.||||++++- + ..+.+...+....+.+.
T Consensus 316 ~f~~sp~pGT~a~~~~--~---~v~~~~k~~R~~~l~~~ 349 (420)
T PRK14339 316 SFKYSPRPLTEAAAWK--N---QVDEEVASERLERLQNR 349 (420)
T ss_pred eEecCCCCCCchhhCC--C---CCCHHHHHHHHHHHHHH
Confidence 9999999999998752 1 35677776666655554
|
|
| >PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-21 Score=207.99 Aligned_cols=180 Identities=17% Similarity=0.215 Sum_probs=141.5
Q ss_pred hcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCC-----HHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcc
Q 008466 158 RYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLP-----ADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATK 231 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~-----~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~ 231 (564)
+..+..+++.++..+.+.| +..| |.|.+++... ...+..|++.+.+. . .
T Consensus 182 rsr~~e~Il~ei~~l~~~G-----~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~-~-------------------g 236 (459)
T PRK14338 182 RSRPLAEIVEEVRRIAARG-----AKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI-P-------------------G 236 (459)
T ss_pred ccCCHHHHHHHHHHHHHCC-----CeEEEEeeecCCCcccccCChHHHHHHHHHHHhc-C-------------------C
Confidence 3456677777777777766 4444 6676655532 33466666666542 1 1
Q ss_pred cEEEEEE-eeCCCCCHHHHHHHHHc--CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCC
Q 008466 232 CIGMTIE-TRPDYCLGPHLRQMLSY--GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDL 306 (564)
Q Consensus 232 ~~eitiE-trPd~i~~e~L~~L~~~--G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GL 306 (564)
...+.+. ++|+.++++.++.|+++ ||.+++||+||+++++|+.|+|+|+.+++.++++.+++. |+.+..|+|+|+
T Consensus 237 i~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~ 316 (459)
T PRK14338 237 LERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGH 316 (459)
T ss_pred cceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEEC
Confidence 1234444 59999999999999996 599999999999999999999999999999999999998 788889999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHH
Q 008466 307 PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~ 366 (564)
||||.+++.++++.+. +++++.+.++++.+.|||+++++..++.| .+++++..+..
T Consensus 317 PgET~ed~~~ti~~l~---~l~~~~v~i~~ysp~pGT~~~~~~~~~~~-~v~~~~~~~R~ 372 (459)
T PRK14338 317 PGETEEQFQRTYDLLE---EIRFDKVHIAAYSPRPGTLAAEMEDDPAL-AVPPEEKQRRR 372 (459)
T ss_pred CCCCHHHHHHHHHHHH---HcCCCEeEEEecCCCCCChhhhCcCCccC-CCCHHHHHHHH
Confidence 9999999999999987 57899999999999999999988666666 35555554443
|
|
| >PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-21 Score=206.88 Aligned_cols=206 Identities=16% Similarity=0.186 Sum_probs=153.0
Q ss_pred ecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcC
Q 008466 110 MSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGG 189 (564)
Q Consensus 110 mt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GG 189 (564)
+....+||| +|.|| . .+. ..|. .+..+..+++.+...+.+.|. -+.+|.|+
T Consensus 151 i~i~rGC~~------~CsfC------~---~p~-~~g~---------~Rsr~~e~Iv~Ei~~l~~~G~----~ei~l~~~ 201 (439)
T PRK14328 151 VTIMYGCNN------FCTYC------I---VPY-VRGR---------ERSRKPEDIIAEIKELVSEGY----KEVTLLGQ 201 (439)
T ss_pred EEHHhCcCC------CCCCC------C---ccc-ccCC---------cccCCHHHHHHHHHHHHHCCC----cEEEEecc
Confidence 344467885 99999 2 222 2232 244566667766666777663 23446677
Q ss_pred CCCCCCH-----HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHcC--CCeEE
Q 008466 190 TFMSLPA-----DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSYG--CTRLE 261 (564)
Q Consensus 190 Tpt~l~~-----~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~G--~~rvs 261 (564)
+++.... ..+..+++.+.+ +. ....+.+. .+|+.++++.++.|+++| |.+++
T Consensus 202 ~~~~yg~d~~~~~~l~~Ll~~l~~-~~-------------------~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~ 261 (439)
T PRK14328 202 NVNSYGKDLEEKIDFADLLRRVNE-ID-------------------GLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIH 261 (439)
T ss_pred ccCcCCcCCCCCcCHHHHHHHHHh-cC-------------------CCcEEEEecCChhhcCHHHHHHHHhCCCcCceee
Confidence 7665421 235556665543 11 11234444 599999999999999996 99999
Q ss_pred EccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 262 IGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 262 iGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
+|+||+++++|+.|||+|+.+++.++++.++++ ++.+..|+|+|+||||.+++.++++++. +++++.+.++++.+
T Consensus 262 iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvG~PgET~ed~~~tl~~i~---~l~~~~~~~~~~sp 338 (439)
T PRK14328 262 LPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTDIIVGFPGETEEDFEETLDLVK---EVRYDSAFTFIYSK 338 (439)
T ss_pred eCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHH---hcCCCcccceEecC
Confidence 999999999999999999999999999999998 6667889999999999999999999986 57899999999999
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
.|||+++++. ...+.+...+....+.+.
T Consensus 339 ~pGT~~~~~~-----~~v~~~~~~~r~~~l~~~ 366 (439)
T PRK14328 339 RKGTPAAKME-----DQVPEDVKHERFNRLVEL 366 (439)
T ss_pred CCCChhhhCC-----CCCCHHHHHHHHHHHHHH
Confidence 9999998752 235666666666555543
|
|
| >TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=204.56 Aligned_cols=182 Identities=15% Similarity=0.126 Sum_probs=140.1
Q ss_pred hcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCC-CH------HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCc
Q 008466 158 RYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSL-PA------DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGAT 230 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l-~~------~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~ 230 (564)
+..+..+++.+...+.+.|. -+.++.|.+++.. .. ..+..+++.|.+. .
T Consensus 172 rsr~~e~I~~Ei~~l~~~g~----~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~~-~------------------- 227 (438)
T TIGR01574 172 ISRPFDDILQEVQKLAEKGV----REITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTI-D------------------- 227 (438)
T ss_pred cccCHHHHHHHHHHHHHcCC----eEEEEEecccCCccCCCCCCCcccHHHHHHHHHhc-C-------------------
Confidence 34566677777777777663 2334567666655 11 2355566655431 1
Q ss_pred ccEEEEEE-eeCCCCCHHHHHHHHHcC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecC
Q 008466 231 KCIGMTIE-TRPDYCLGPHLRQMLSYG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPD 305 (564)
Q Consensus 231 ~~~eitiE-trPd~i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~G 305 (564)
....+.+. .+|+.++++.++.|+++| |.++++|+||+++++|+.|||+|+.+++.++++.++++ |+.+..|+|+|
T Consensus 228 ~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i~~d~IvG 307 (438)
T TIGR01574 228 GIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSISTDIIVG 307 (438)
T ss_pred CceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEeeCEEEe
Confidence 12234554 599999999999999999 99999999999999999999999999999999999998 67788899999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 306 LPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 306 LPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
+||||.+++.++++++. +++++++.++++.+.|||+++++. + ..+.++..+.+..+.+
T Consensus 308 ~PgEt~ed~~~tl~~i~---~~~~~~~~~~~~sp~pGT~~~~~~--~---~v~~~~~~~r~~~l~~ 365 (438)
T TIGR01574 308 FPGETEEDFEETLDLLR---EVEFDSAFSFIYSPRPGTPAADMP--D---QIPEEIKKRRLQRLQA 365 (438)
T ss_pred CCCCCHHHHHHHHHHHH---hcCCCeeeeEEecCCCCCchhhCC--C---CCCHHHHHHHHHHHHH
Confidence 99999999999999987 577999999999999999998752 1 2456666555554444
|
Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme. |
| >TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=200.91 Aligned_cols=207 Identities=15% Similarity=0.146 Sum_probs=153.1
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEE
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILM 187 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~ 187 (564)
+.+....+||| +|+||. .+.. .|+ .+..+..+++.++.++.+.|. -+.+|.
T Consensus 137 ~~i~~srGC~~------~CsfC~---------~~~~-~G~---------~r~r~~e~Vv~Ei~~l~~~g~----k~i~~~ 187 (430)
T TIGR01125 137 AYLKVAEGCNR------RCAFCI---------IPSI-RGK---------LRSRPIEEILKEAERLVDQGV----KEIILI 187 (430)
T ss_pred EEEEEccCCCC------CCCcCC---------eecc-cCC---------ceecCHHHHHHHHHHHHHCCC----cEEEEE
Confidence 44556678996 999992 2222 232 244556677777777777663 133344
Q ss_pred cCCCCCC-----CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEE-EeeCCCCCHHHHHHHHHcC--CCe
Q 008466 188 GGTFMSL-----PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTI-ETRPDYCLGPHLRQMLSYG--CTR 259 (564)
Q Consensus 188 GGTpt~l-----~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eiti-EtrPd~i~~e~L~~L~~~G--~~r 259 (564)
|.+.+.. +..++.+|++.|.+. + ....+++ .++|+.++++.++.|+++| |..
T Consensus 188 ~~d~~~~g~d~~~~~~l~~Ll~~i~~~-~-------------------~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~ 247 (430)
T TIGR01125 188 AQDTTAYGKDLYRESKLVDLLEELGKV-G-------------------GIYWIRMHYLYPDELTDDVIDLMAEGPKVLPY 247 (430)
T ss_pred eECCCccccCCCCcccHHHHHHHHHhc-C-------------------CccEEEEccCCcccCCHHHHHHHhhCCcccCc
Confidence 4333322 245677777776542 1 0112344 3699999999999999996 899
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
+.||+||+++++|+.|||+++.+++.++++.++++ |+.+..++|+|+||||.+++.++++++. +++++.+.++++
T Consensus 248 l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~---~~~~~~~~~~~~ 324 (430)
T TIGR01125 248 LDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFVE---EGQFDRLGAFTY 324 (430)
T ss_pred eEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHHHH---hcCCCEEeeeec
Confidence 99999999999999999999999999999999998 4557789999999999999999999986 578999999999
Q ss_pred eecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 338 LVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 338 ~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
+|.|||+++.+- + ..+.++..+.+..+..
T Consensus 325 sp~pGT~~~~~~--~---~i~~~~~~~r~~~l~~ 353 (430)
T TIGR01125 325 SPEEGTDAFALP--D---QVPEEVKEERLERLMQ 353 (430)
T ss_pred cCCCCCccccCC--C---CCCHHHHHHHHHHHHH
Confidence 999999998641 1 2456666555554443
|
This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. |
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=174.08 Aligned_cols=162 Identities=27% Similarity=0.379 Sum_probs=142.8
Q ss_pred cEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCe
Q 008466 181 KVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTR 259 (564)
Q Consensus 181 kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~r 259 (564)
.++.+ ++||+|+..+.+.+.++++.+++.... .....+++.|++..++++.++.|+++|+++
T Consensus 51 ~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~ 113 (216)
T smart00729 51 LVGTVFIGGGTPTLLSPEQLEELLEAIREILGL-----------------ADDVEITIETRPGTLTEELLEALKEAGVNR 113 (216)
T ss_pred ceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCC-----------------CCCeEEEEEeCcccCCHHHHHHHHHcCCCe
Confidence 35666 679999999988888999988875431 124679999999999999999999999999
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcC-CcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAG-FKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G-~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
+.++++|+++++++.++++++.+++.++++.++++| +.+..++|+|+|+++.+++.+.++.+. +++++.+.++++.
T Consensus 114 i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~ 190 (216)
T smart00729 114 VSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLK---ELGPDRVSIFPLS 190 (216)
T ss_pred EEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHH---HcCCCeEEeeeee
Confidence 999999999999999999999999999999999999 889999999999999999999998876 5789999999999
Q ss_pred ecCCChhHHHHHcCCCCCCCHHHHHH
Q 008466 339 VIRGTGLYELWKTGRYRNYPPEQLVD 364 (564)
Q Consensus 339 v~~GT~L~~~~~~G~~~~~~~ee~~~ 364 (564)
+.|||++++++.+ +.+++.++.++
T Consensus 191 p~~~t~~~~~~~~--~~~~~~~~~~~ 214 (216)
T smart00729 191 PRPGTPLAKLYKR--LKPPDKEERLE 214 (216)
T ss_pred eCCCChHHHhccc--CCCCChhhhhh
Confidence 9999999998866 66777776654
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-20 Score=200.50 Aligned_cols=182 Identities=14% Similarity=0.099 Sum_probs=139.7
Q ss_pred hcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCH------HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCc
Q 008466 158 RYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPA------DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGAT 230 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~------~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~ 230 (564)
+..+..+++.+...+...| ++-| |.|.+++.+.. ..+..+++.|.+. .
T Consensus 175 rsr~~e~Iv~Ei~~l~~~G-----~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~-~------------------- 229 (446)
T PRK14337 175 KSRSSAAVLDECRALVDRG-----AREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAAL-P------------------- 229 (446)
T ss_pred eeCCHHHHHHHHHHHHHCC-----CeEEEEEecCccccccCCCCCCccHHHHHHHHHhc-C-------------------
Confidence 4566677777777777766 4444 66766655421 2345555555431 1
Q ss_pred ccEEEEEE-eeCCCCCHHHHHHHHHc--CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecC
Q 008466 231 KCIGMTIE-TRPDYCLGPHLRQMLSY--GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPD 305 (564)
Q Consensus 231 ~~~eitiE-trPd~i~~e~L~~L~~~--G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~G 305 (564)
....+.+. .+|+.++++.++.|+++ ||.+++||+||+++++|+.|||+|+.+++.++++.++++ |+.+..|||+|
T Consensus 230 g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~d~IvG 309 (446)
T PRK14337 230 GLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTTDLIVG 309 (446)
T ss_pred CCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE
Confidence 11123443 69999999999999995 599999999999999999999999999999999999998 57788999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 306 LPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 306 LPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
+||||.+++.++++++. +++++.+.++++.+.|||+.+.+- ...+++...+....+.+.
T Consensus 310 ~PgET~ed~~~tl~~l~---~~~~~~~~~f~ysp~pgT~a~~~~-----~~v~~~vk~~R~~~l~~~ 368 (446)
T PRK14337 310 FPGETEEDFEQTLEAMR---TVGFASSFSFCYSDRPGTRAEMLP-----GKVPEEVKSARLARLQEL 368 (446)
T ss_pred CCCCCHHHHHHHHHHHH---hcCCCeeEEEecCCCCCCccccCC-----CCCCHHHHHHHHHHHHHH
Confidence 99999999999999987 577899999999999999988641 125666766666555544
|
|
| >TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=194.94 Aligned_cols=206 Identities=15% Similarity=0.187 Sum_probs=150.5
Q ss_pred EEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-
Q 008466 107 VAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI- 185 (564)
Q Consensus 107 vavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I- 185 (564)
.+.+....+||| +|+||. .+. ..|. .+..+..+++.+...+.+.| ++.|
T Consensus 134 ~~~i~isrGC~~------~CsfC~---------ip~-~~G~---------~rsr~~e~Vl~Ei~~l~~~G-----~~ei~ 183 (420)
T TIGR01578 134 IEIIPINQGCLG------NCSYCI---------TKH-ARGK---------LASYPPEKIVEKARQLVAEG-----CKEIW 183 (420)
T ss_pred EEEEEEccCCCC------CCCCCc---------ccc-CCCC---------cccCCHHHHHHHHHHHHHCC-----CeEEE
Confidence 456666788996 999992 222 2222 24456677777777777776 4444
Q ss_pred EEcCCCCCCCH---HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCC---CCCHHHHHHHHHcC-C
Q 008466 186 LMGGTFMSLPA---DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPD---YCLGPHLRQMLSYG-C 257 (564)
Q Consensus 186 ~~GGTpt~l~~---~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd---~i~~e~L~~L~~~G-~ 257 (564)
+.|.+.+.+.. ..+.++++.+.+ +. ....+.+. .+|. .++++.++.|+..+ |
T Consensus 184 l~g~d~~~yg~d~~~~l~~Ll~~l~~-i~-------------------~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~ 243 (420)
T TIGR01578 184 ITSQDTGAYGRDIGSRLPELLRLITE-IP-------------------GEFRLRVGMMNPKNVLEILDELANVYQHEKVY 243 (420)
T ss_pred EEeeccccccCCCCcCHHHHHHHHHh-CC-------------------CCcEEEEcCCCCCcccccCHHHHHHHhccccc
Confidence 55554443321 235566655543 11 11234555 3775 45788888888655 7
Q ss_pred CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEe
Q 008466 258 TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
..+++|+||+++++|+.|||+++.+++.++++.++++ |+.+..|+|+|+||||.+++.++++++. +++++.+.++
T Consensus 244 ~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~---~~~~~~i~~~ 320 (420)
T TIGR01578 244 KFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTDIIVGFPTETDDDFEETMELLR---KYRPEKINIT 320 (420)
T ss_pred CceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEeeEEEeCCCCCHHHHHHHHHHHH---HhCCCEEEEE
Confidence 9999999999999999999999999999999999998 8889999999999999999999999987 5789999999
Q ss_pred eeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 336 PTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 336 ~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
++.|.|||+++++ +..+.+...+....+.+
T Consensus 321 ~~~p~pGT~~~~~------~~v~~~~~~~R~~~l~~ 350 (420)
T TIGR01578 321 KFSPRPGTPAAKM------KRIPTNIVKKRSKRLTK 350 (420)
T ss_pred EeeCCCCCcccCC------CCCCHHHHHHHHHHHHH
Confidence 9999999999864 12455555555544443
|
This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model. |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=187.84 Aligned_cols=180 Identities=13% Similarity=0.079 Sum_probs=142.2
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
.+..+++.....+.+.|. ..+-.+.+|+.|...+.+++.++++.+++.. .+.+.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~--~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~-----------------------~i~~~~ 145 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGA--GTFCIVASGRGPSGKEVDQVVEAVKAIKEET-----------------------DLEICA 145 (336)
T ss_pred CCHHHHHHHHHHHHHCCC--CEEEEEecCCCCCchHHHHHHHHHHHHHhcC-----------------------CCcEEe
Confidence 345666666666776663 1122222355554433346666666665432 133344
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFR 319 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~ 319 (564)
+...++++.++.|+++|++++.+|+|| ++++++.++++|+.++.+++++.++++|+++++++|+|+ |||.+++.+++.
T Consensus 146 ~~g~l~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~ 223 (336)
T PRK06256 146 CLGLLTEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAF 223 (336)
T ss_pred cCCcCCHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHH
Confidence 566699999999999999999999999 999999999999999999999999999999999999999 999999999998
Q ss_pred HHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 320 EFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 320 ~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
.+. +++++.+.++++.|.|||||+. ..+++.++.+.+++.+.-.+|.
T Consensus 224 ~l~---~l~~~~v~i~~l~P~pGT~l~~------~~~~~~~e~l~~ia~~Rl~~p~ 270 (336)
T PRK06256 224 FLK---ELDADSIPINFLNPIPGTPLEN------HPELTPLECLKTIAIFRLINPD 270 (336)
T ss_pred HHH---hCCCCEEeecccccCCCCCCCC------CCCCCHHHHHHHHHHHHHHCCC
Confidence 886 6889999999999999999864 2568999999999988777764
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=177.40 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=119.7
Q ss_pred EEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHH
Q 008466 236 TIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDL 315 (564)
Q Consensus 236 tiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~ 315 (564)
.+..++..+++|.++.|+++|+++|.+|+| .++++++.++++|+.+++.++++.++++|++++.++|+|+ ++|.+++.
T Consensus 113 ~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~ 190 (296)
T TIGR00433 113 KTCATLGLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRI 190 (296)
T ss_pred eEEecCCCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHH
Confidence 334566778999999999999999999999 8999999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 316 ESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 316 ~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
++++.+. .++++.+.++++.|.|||+|+. +.+++.+++++.++.+...+|+.
T Consensus 191 ~~~~~l~---~l~~~~i~l~~l~p~~gT~l~~------~~~~s~~~~~~~ia~~r~~lp~~ 242 (296)
T TIGR00433 191 GLALALA---NLPPESVPINFLVKIKGTPLAD------NKELSADDALKTIALARIIMPKA 242 (296)
T ss_pred HHHHHHH---hCCCCEEEeeeeEEcCCCccCC------CCCCCHHHHHHHHHHHHHHCCcc
Confidence 9998886 5789999999999999999875 67889999999999999999864
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=184.00 Aligned_cols=198 Identities=17% Similarity=0.228 Sum_probs=151.6
Q ss_pred CCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCC------HH
Q 008466 124 NICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLP------AD 197 (564)
Q Consensus 124 ~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~------~~ 197 (564)
+.|+|| ..| ...|. .+-.+..+++.+..+|.+.|.. |.++.|=+-+++- ..
T Consensus 156 ~~CtfC---------iiP-~~RG~---------~rSr~~e~Il~ev~~Lv~~G~k----EI~L~gqdv~aYG~D~~~~~~ 212 (437)
T COG0621 156 KFCTFC---------IIP-YARGK---------ERSRPPEDILKEVKRLVAQGVK----EIVLTGQDVNAYGKDLGGGKP 212 (437)
T ss_pred CCCCee---------eee-ccCCC---------ccCCCHHHHHHHHHHHHHCCCe----EEEEEEEehhhccccCCCCcc
Confidence 599999 333 33454 3557788889999999998852 2223232222211 24
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcC--CCeEEEccCCCCHHHHHh
Q 008466 198 YRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYG--CTRLEIGVQSTYEDVARD 274 (564)
Q Consensus 198 ~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~ 274 (564)
.+..||+.|.+ .+ ....+.+.+ +|..++++.++++++.. +..+.|-|||++|++|+.
T Consensus 213 ~l~~Ll~~l~~-I~-------------------G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~ 272 (437)
T COG0621 213 NLADLLRELSK-IP-------------------GIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKR 272 (437)
T ss_pred CHHHHHHHHhc-CC-------------------CceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHH
Confidence 46667776655 32 345788886 99999999999999964 799999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 275 TNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 275 i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
|+|+||.+++.+.++.+|++ ++.+.+|+|+|+||||.++|.+|++.+- +.++|++.++++.+.||||-+.+.
T Consensus 273 M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~---e~~fd~~~~F~YSpRpGTpAa~~~--- 346 (437)
T COG0621 273 MKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETLDLVE---EVRFDRLHVFKYSPRPGTPAALMP--- 346 (437)
T ss_pred hCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHHHHHH---HhCCCEEeeeecCCCCCCccccCC---
Confidence 99999999999999999986 3446789999999999999999998886 688999999999999999987432
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q 008466 353 RYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~ 372 (564)
...+.+..-+.+..+.++
T Consensus 347 --~qvp~~vkkeR~~~L~~l 364 (437)
T COG0621 347 --DQVPEEVKKERLRRLQEL 364 (437)
T ss_pred --CCCCHHHHHHHHHHHHHH
Confidence 245666666666555544
|
|
| >PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-18 Score=183.76 Aligned_cols=206 Identities=14% Similarity=0.175 Sum_probs=151.7
Q ss_pred EEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEE
Q 008466 107 VAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFIL 186 (564)
Q Consensus 107 vavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~ 186 (564)
.|.+....+||| +|+|| ..+.. .|+ .+..+..+++.++..+.+.|.. +.++
T Consensus 140 ~a~v~isrGCp~------~CsFC---------~ip~~-~G~---------~rsr~~e~Vv~Ei~~l~~~g~k----ei~l 190 (440)
T PRK14862 140 YAYLKISEGCNH------RCTFC---------IIPSM-RGD---------LVSRPIGDVLREAERLVKAGVK----ELLV 190 (440)
T ss_pred EEEEEeccCCCC------CCccC---------Ccccc-cCC---------ccccCHHHHHHHHHHHHHCCCc----eEEE
Confidence 355566778996 99999 23322 232 2456777888877778776631 2334
Q ss_pred EcCCCCCC------------C---HHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHH
Q 008466 187 MGGTFMSL------------P---ADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLR 250 (564)
Q Consensus 187 ~GGTpt~l------------~---~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~ 250 (564)
.|.+.+.. . ..++..|++.|.+. . ..+.+. +.|..++++.++
T Consensus 191 ~~~d~~~yg~d~~~~~~~~~~~~~~~~~~~Ll~~l~~~-~---------------------~~~r~~~~~p~~~~dell~ 248 (440)
T PRK14862 191 ISQDTSAYGVDVKYRTGFWNGRPVKTRMTDLCEALGEL-G---------------------AWVRLHYVYPYPHVDEVIP 248 (440)
T ss_pred EecChhhhccccccccccccccchhhHHHHHHHHHHhc-C---------------------CEEEEecCCCCcCCHHHHH
Confidence 43332111 0 34566666666542 1 134444 467778899999
Q ss_pred HHHHcCCC--eEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCC
Q 008466 251 QMLSYGCT--RLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPL 326 (564)
Q Consensus 251 ~L~~~G~~--rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~ 326 (564)
.|++ |+. .+.||+||+++++|+.|||+++.+++.++++.+++. |+.+..++|+|+||||.+++.++++++. +
T Consensus 249 ~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~---e 324 (440)
T PRK14862 249 LMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREICPDLTIRSTFIVGFPGETEEDFQMLLDFLK---E 324 (440)
T ss_pred HHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCCCceecccEEEECCCCCHHHHHHHHHHHH---H
Confidence 9999 764 899999999999999999999999999999999996 6778889999999999999999999987 5
Q ss_pred CCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 327 FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 327 l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
++++.+.+++++|.|||+.+++ . ...++++..+.+..+.+.
T Consensus 325 ~~~d~~~~f~ysP~pGT~a~~~--~---~~v~~~~~~~r~~~l~~~ 365 (440)
T PRK14862 325 AQLDRVGCFKYSPVEGATANDL--P---DQVPEEVKEERWARFMEV 365 (440)
T ss_pred cCCCeeeeEeecCCCCCchhhC--C---CCCCHHHHHHHHHHHHHH
Confidence 7899999999999999997543 1 236777777777665553
|
|
| >COG1244 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=159.60 Aligned_cols=174 Identities=21% Similarity=0.376 Sum_probs=150.5
Q ss_pred EEEEEEcCCCC---CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHc--C
Q 008466 182 VEFILMGGTFM---SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSY--G 256 (564)
Q Consensus 182 ve~I~~GGTpt---~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~--G 256 (564)
+--||..|.|. -.|++....+++.|.+. +.+.++.+|+||+++++|.|+.+.+. |
T Consensus 103 ~vkIFTSGSFLD~~EVP~e~R~~Il~~is~~--------------------~~v~~vvvESRpE~I~eE~l~e~~~il~g 162 (358)
T COG1244 103 VVKIFTSGSFLDPEEVPREARRYILERISEN--------------------DNVKEVVVESRPEFIREERLEEITEILEG 162 (358)
T ss_pred eEEEEcccccCChhhCCHHHHHHHHHHHhhc--------------------cceeEEEeecCchhcCHHHHHHHHHhhCC
Confidence 33467777664 46777777777777642 24578999999999999999999998 7
Q ss_pred C-CeEEEccCCCCHHHH-HhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 257 C-TRLEIGVQSTYEDVA-RDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 257 ~-~rvsiGvQS~~d~vL-~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
. ..|.||+||.||++. ..||||.|.+++.+|++.++.+|+++-+++++-+|.-+..+..+++...+.......|.|++
T Consensus 163 k~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~vktYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSi 242 (358)
T COG1244 163 KIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKVKTYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISI 242 (358)
T ss_pred ceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCceeEEEEecccccChHHHHHHHHHHHHHhccCCCeEEe
Confidence 5 899999999999999 59999999999999999999999999999999999998877666655555444567899999
Q ss_pred eeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 335 YPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 335 y~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
.|+.|.+||-+..+|++|.|+||-....++.+..++...|.
T Consensus 243 nptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~~ 283 (358)
T COG1244 243 NPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGPM 283 (358)
T ss_pred cccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999998864
|
|
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-17 Score=174.44 Aligned_cols=218 Identities=16% Similarity=0.178 Sum_probs=160.0
Q ss_pred cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE--EEcCCCCCCCHH
Q 008466 120 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI--LMGGTFMSLPAD 197 (564)
Q Consensus 120 PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I--~~GGTpt~l~~~ 197 (564)
.+|+.+|.|| .|.. .+. .+ ...-...+++.....+.+.| ++.| ++|++|...+.+
T Consensus 82 n~C~~~C~YC------~f~~---~~~-~~--------~~~ls~eEI~~~a~~~~~~G-----v~~i~lvgGe~p~~~~~e 138 (371)
T PRK09240 82 NYCANDCTYC------GFSM---SNK-IK--------RKTLDEEEIEREMAAIKKLG-----FEHILLLTGEHEAKVGVD 138 (371)
T ss_pred ccccCcCCcC------CCCC---CCC-Cc--------cccCCHHHHHHHHHHHHhCC-----CCEEEEeeCCCCCCCCHH
Confidence 5667899999 5531 111 10 12334455555555566666 4444 356678778999
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcC-
Q 008466 198 YRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTN- 276 (564)
Q Consensus 198 ~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~- 276 (564)
++.++++.|++.++ ++++++.| ++.+.++.|+++|++++++++||.+++.++.+.
T Consensus 139 ~l~~~i~~Ik~~~p----------------------~i~i~~g~--lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~ 194 (371)
T PRK09240 139 YIRRALPIAREYFS----------------------SVSIEVQP--LSEEEYAELVELGLDGVTVYQETYNPATYAKHHL 194 (371)
T ss_pred HHHHHHHHHHHhCC----------------------CceeccCC--CCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCc
Confidence 99999999887653 35666665 799999999999999999999999999999985
Q ss_pred --CCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCC-CC--CCCeEEEeeeeecCCChhHHHHH
Q 008466 277 --RGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESP-LF--RADGLKIYPTLVIRGTGLYELWK 350 (564)
Q Consensus 277 --Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~-~l--~pd~i~iy~l~v~~GT~L~~~~~ 350 (564)
+.|+.++.+++++.++++||+ +++++|+|+ |++.++..+++..+.++. .+ .+..|.+..+.|.+| ++..
T Consensus 195 ~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl-ge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~--- 269 (371)
T PRK09240 195 RGPKRDFEYRLETPERAGRAGIRKIGLGALLGL-SDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEP--- 269 (371)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeeceEEEecC-CccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCC---
Confidence 689999999999999999996 999999999 568887777776554321 11 124678888999999 8632
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHH
Q 008466 351 TGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELA 404 (564)
Q Consensus 351 ~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a 404 (564)
..+++++++++.++.+.-.+|. +.| ..+|-+..++|+..
T Consensus 270 ---~~~~~~~e~l~~ia~~Rl~lP~-~~i-----------~~s~g~~~~lrd~~ 308 (371)
T PRK09240 270 ---ASIVSDKQLVQLICAFRLFLPD-VEI-----------SLSTRESPEFRDNL 308 (371)
T ss_pred ---CCCCCHHHHHHHHHHHHHHCcc-ccc-----------EEecCCCHHHHHHH
Confidence 3568999999999998888863 222 23455556666543
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-17 Score=171.22 Aligned_cols=185 Identities=11% Similarity=0.092 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE- 238 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE- 238 (564)
+..+++....++...| +..| +.||+.+.++.+++.++++.|++.++. +.|.+.
T Consensus 71 s~eeI~e~~~~~~~~G-----~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~--------------------i~~~~~t 125 (343)
T TIGR03551 71 SLEEIAERAAEAWKAG-----ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG--------------------MHIHAFS 125 (343)
T ss_pred CHHHHHHHHHHHHHCC-----CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC--------------------ceEEecC
Confidence 5566666666666666 4445 567877778899999999999886541 234432
Q ss_pred --------eeCCCCCHHHHHHHHHcCCCeEE-EccCCCCHHHHHhcCCCC-CHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 008466 239 --------TRPDYCLGPHLRQMLSYGCTRLE-IGVQSTYEDVARDTNRGH-TVAAVADCFCLAKDAGFKVVAHMMPDLPN 308 (564)
Q Consensus 239 --------trPd~i~~e~L~~L~~~G~~rvs-iGvQS~~d~vL~~i~Rgh-t~~~~~~ai~~lr~~G~~v~~~lI~GLPg 308 (564)
++.+.++++.++.|+++|++++. .|.+++++++++.+.+++ +.++.+++++.++++|+++++.+|+|+|
T Consensus 126 ~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~- 204 (343)
T TIGR03551 126 PMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHV- 204 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecC-
Confidence 25667789999999999999997 578999999999999975 9999999999999999999999999986
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC----CChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 309 VGVERDLESFREFFESPLFRADGLKIYPTLVIR----GTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 309 et~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~----GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
||.++..+++..+. +++++...+.++.|.+ ||||++.. ....+++.++.+.+++-+.-.+|..
T Consensus 205 Et~ed~~~~l~~lr---~l~~~~~~~~~~iP~~f~~~gT~l~~~~--~~~~~~~~~~~lr~iAv~Rl~lp~~ 271 (343)
T TIGR03551 205 ETPEHWVDHLLILR---EIQEETGGFTEFVPLPFVHYNAPLYLKG--MARPGPTGREDLKVHAIARILLHGL 271 (343)
T ss_pred CCHHHHHHHHHHHH---HhhHHhCCeeEEEeccccCCCCcccccc--CCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999887 5777777777777766 99998631 1224579999999999999899874
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.1e-17 Score=170.78 Aligned_cols=195 Identities=13% Similarity=0.101 Sum_probs=146.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE--EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI--LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I--~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
+..++......+...| ++.| ++|++|...+.+++.++++.+++.++ +++++
T Consensus 104 s~eEI~~~a~~~~~~G-----v~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p----------------------~i~Ie 156 (366)
T TIGR02351 104 NEEEIEREIEAIKKSG-----FKEILLVTGESEKAAGVEYIAEAIKLAREYFS----------------------SLAIE 156 (366)
T ss_pred CHHHHHHHHHHHHhCC-----CCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCC----------------------ccccc
Confidence 3445555455566666 3333 36778888999999999999987664 24455
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcC---CCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTN---RGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERD 314 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~---Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~ 314 (564)
..| ++.+.++.|+++|++|+++|+||.++++++.++ +.|+.++.+++++.++++||. +++++|+|+|+ +.++.
T Consensus 157 i~~--lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e-~~~d~ 233 (366)
T TIGR02351 157 VQP--LNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDD-WRTDA 233 (366)
T ss_pred ccc--CCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCch-hHHHH
Confidence 555 899999999999999999999999999999986 789999999999999999998 88999999975 66666
Q ss_pred HHHHHHHhcCCCC---CCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHH
Q 008466 315 LESFREFFESPLF---RADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLV 391 (564)
Q Consensus 315 ~~t~~~~~~~~~l---~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~ 391 (564)
.+++..+..+... .+..|++--+.|.+| ++.. ..++++.+.++.++.+.-.+|.. .+.
T Consensus 234 ~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~------~~~l~~~~~~~~i~~~R~~~P~~------------~i~ 294 (366)
T TIGR02351 234 FFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKP------KVIVTDRELVQIICAYRLFDPFV------------EIS 294 (366)
T ss_pred HHHHHHHHHHHHHcCCCCccccccccccCCC-CCCC------CCcCCHHHHHHHHHHHHHhCccc------------ccE
Confidence 6655554432111 126788888899998 7632 25789999999999988888741 123
Q ss_pred HhCCCcchHHHHH
Q 008466 392 TSGVEKGNLRELA 404 (564)
Q Consensus 392 ~~G~~~~~~~~~a 404 (564)
.+|-+..++|+..
T Consensus 295 ~s~g~~~~lrd~~ 307 (366)
T TIGR02351 295 LSTRESKKFRDNV 307 (366)
T ss_pred EecCCCHHHHHHH
Confidence 4455666666443
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.8e-16 Score=157.12 Aligned_cols=177 Identities=13% Similarity=0.118 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEE--EcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFIL--MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I~--~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
+-.+++....+..+.|. .+..+ .|-++.....+++.++++.|++.+. .+.+.
T Consensus 41 s~eeI~~~a~~a~~~g~----~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p----------------------~l~i~ 94 (279)
T PRK08508 41 DIEQIVQEAKMAKANGA----LGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVP----------------------GLHLI 94 (279)
T ss_pred CHHHHHHHHHHHHHCCC----CEEEEEeccCCCCcccHHHHHHHHHHHHhhCC----------------------CcEEE
Confidence 44566655555555552 12323 2333444455677777777765442 23344
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESF 318 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~ 318 (564)
+....+++|.++.|+++|++++.++++|. ++.+..+..+|+.++++++++.++++|+++...+|+|+ |||+++..+.+
T Consensus 95 ~s~G~~~~e~l~~Lk~aGld~~~~~lEt~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl-GEt~ed~~~~l 172 (279)
T PRK08508 95 ACNGTASVEQLKELKKAGIFSYNHNLETS-KEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL-GESWEDRISFL 172 (279)
T ss_pred ecCCCCCHHHHHHHHHcCCCEEcccccch-HHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec-CCCHHHHHHHH
Confidence 44566789999999999999999999995 78899999999999999999999999999999999998 99999999999
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
..+. +++++.+.++.+.+.+|||+.. .+.+.++.+.+++-+.-.+|.
T Consensus 173 ~~lr---~L~~~svpl~~~~p~~~t~~~~-------~~~~~~~~lr~iAv~Rl~lp~ 219 (279)
T PRK08508 173 KSLA---SLSPHSTPINFFIPNPALPLKA-------PTLSADEALEIVRLAKEALPN 219 (279)
T ss_pred HHHH---cCCCCEEeeCCcCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHCCC
Confidence 8886 6889999999999999999841 357999999999988888874
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=161.30 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=116.6
Q ss_pred EeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHH
Q 008466 238 ETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLES 317 (564)
Q Consensus 238 EtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t 317 (564)
-+....++++.++.|+++|++++.++++| +++..+.+..+|+.++.+++++.++++|+++++++|+|+ |||.++..++
T Consensus 170 ~~s~G~l~~E~l~~LkeAGld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gEt~edrv~~ 247 (379)
T PLN02389 170 CCTLGMLEKEQAAQLKEAGLTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL-GEAEEDRVGL 247 (379)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC-CCCHHHHHHH
Confidence 35667789999999999999999999999 588999998899999999999999999999999999999 9999999999
Q ss_pred HHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 318 FREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 318 ~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
+..+.++ ...|+.+.+.++.|.|||||++ .++++.++.+.+++.+.-++|..
T Consensus 248 l~~Lr~L-~~~~~~v~l~~l~P~~GTpL~~------~~~~s~~e~lr~iAi~Rl~lP~~ 299 (379)
T PLN02389 248 LHTLATL-PEHPESVPINALVAVKGTPLED------QKPVEIWEMVRMIATARIVMPKA 299 (379)
T ss_pred HHHHHhc-ccCCcEEecccceecCCCcCCC------CCCCCHHHHHHHHHHHHHHCCCc
Confidence 9877643 2379999999999999999965 25689999999999998889864
|
|
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-16 Score=147.43 Aligned_cols=140 Identities=24% Similarity=0.367 Sum_probs=122.9
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..+ ++||+|+..+ .+..+++.+++... ...+++.|++..++++.++.|+++|+.+|
T Consensus 45 ~~~i~~~ggep~~~~--~~~~~i~~~~~~~~--------------------~~~~~i~T~~~~~~~~~~~~l~~~g~~~i 102 (204)
T cd01335 45 VEVVILTGGEPLLYP--ELAELLRRLKKELP--------------------GFEISIETNGTLLTEELLKELKELGLDGV 102 (204)
T ss_pred ceEEEEeCCcCCccH--hHHHHHHHHHhhCC--------------------CceEEEEcCcccCCHHHHHHHHhCCCceE
Confidence 4555 6899998776 56666776665432 35799999999889999999999999999
Q ss_pred EEccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCC-CCeEEEeeee
Q 008466 261 EIGVQSTYEDVARDTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFR-ADGLKIYPTL 338 (564)
Q Consensus 261 siGvQS~~d~vL~~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~-pd~i~iy~l~ 338 (564)
.+|++|.++++++.++ ++.+.++++++++.+++.|+.+.+.+|+|+|+++.+++.++++.+.+ +. ++.+.++++.
T Consensus 103 ~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~ 179 (204)
T cd01335 103 GVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAE---FRSPDRVSLFRLL 179 (204)
T ss_pred EEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCChhHHHHHHHHHHHh---hcCcchhhhhhhc
Confidence 9999999999999998 88999999999999999999999999999999998888999988873 44 8999999999
Q ss_pred ecCCChhH
Q 008466 339 VIRGTGLY 346 (564)
Q Consensus 339 v~~GT~L~ 346 (564)
+.+||+|+
T Consensus 180 p~~~t~~~ 187 (204)
T cd01335 180 PEEGTPLE 187 (204)
T ss_pred ccCCCeee
Confidence 99999998
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.7e-16 Score=158.12 Aligned_cols=202 Identities=15% Similarity=0.182 Sum_probs=156.1
Q ss_pred CCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEE-EcCCCCCCCHHHHH
Q 008466 122 TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFIL-MGGTFMSLPADYRD 200 (564)
Q Consensus 122 C~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~-~GGTpt~l~~~~l~ 200 (564)
|+..|.||++. .+.-++.. ........+++......++.|- .+..+ .+|--.-...+++.
T Consensus 61 c~edC~yC~qS--------~~~~~~~~-------~~~l~~~eeIle~Ak~ak~~Ga----~r~c~~aagr~~~~~~~~i~ 121 (335)
T COG0502 61 CPEDCAYCSQS--------ARYKTGVK-------ARKLMEVEEILEAAKKAKAAGA----TRFCMGAAGRGPGRDMEEVV 121 (335)
T ss_pred CCCCCCCcccc--------ccCcCCCc-------hhhcCCHHHHHHHHHHHHHcCC----ceEEEEEeccCCCccHHHHH
Confidence 45899999532 22112221 2334566777777777888773 23332 22211335556666
Q ss_pred HHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCC
Q 008466 201 YFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHT 280 (564)
Q Consensus 201 ~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght 280 (564)
+.++.+++.++ +-+-+....++++.++.|+++|++++..+++| +++..+.+--+||
T Consensus 122 ~~v~~Vk~~~~-----------------------le~c~slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I~tt~t 177 (335)
T COG0502 122 EAIKAVKEELG-----------------------LEVCASLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENIITTRT 177 (335)
T ss_pred HHHHHHHHhcC-----------------------cHHhhccCCCCHHHHHHHHHcChhheeccccc-CHHHHcccCCCCC
Confidence 66666665443 33334556789999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCC-CCeEEEeeeeecCCChhHHHHHcCCCCCCCH
Q 008466 281 VAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFR-ADGLKIYPTLVIRGTGLYELWKTGRYRNYPP 359 (564)
Q Consensus 281 ~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~-pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ 359 (564)
.+|.+++++.+|++|+++++..|+|| |||.++..+.+..+.+ +. ||.|.|+.|.|.|||||++ .++.+.
T Consensus 178 ~edR~~tl~~vk~~Gi~vcsGgI~Gl-GEs~eDri~~l~~L~~---l~~pdsVPIn~l~P~~GTPle~------~~~~~~ 247 (335)
T COG0502 178 YEDRLNTLENVREAGIEVCSGGIVGL-GETVEDRAELLLELAN---LPTPDSVPINFLNPIPGTPLEN------AKPLDP 247 (335)
T ss_pred HHHHHHHHHHHHHcCCccccceEecC-CCCHHHHHHHHHHHHh---CCCCCeeeeeeecCCCCCcccc------CCCCCH
Confidence 99999999999999999999999999 8999998888888874 55 9999999999999999976 467899
Q ss_pred HHHHHHHHHHHHhCCCc
Q 008466 360 EQLVDIVARILAMVPPW 376 (564)
Q Consensus 360 ee~~~~~~~~~~~lp~~ 376 (564)
.+.+..++.+.-.+|..
T Consensus 248 ~e~lk~IA~~Ri~~P~~ 264 (335)
T COG0502 248 FEFLKTIAVARIIMPKS 264 (335)
T ss_pred HHHHHHHHHHHHHCCcc
Confidence 99999999999999853
|
|
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-16 Score=159.65 Aligned_cols=182 Identities=11% Similarity=0.111 Sum_probs=138.3
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
.+..+++.........| ++.| +.||+...++.+++.++++.|++.... +.+..-
T Consensus 36 ls~eeI~~~~~~~~~~G-----~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~--------------------i~~~~~ 90 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKG-----ATEVCIQGGLNPQLDIEYYEELFRAIKQEFPD--------------------VHIHAF 90 (309)
T ss_pred CCHHHHHHHHHHHHHCC-----CCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--------------------ceEEec
Confidence 44556666555566666 3444 557766668889999999999886531 223322
Q ss_pred ee---------CCCCCHHHHHHHHHcCCCeEE-EccCCCCHHHHHhc-CCCCCHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 008466 239 TR---------PDYCLGPHLRQMLSYGCTRLE-IGVQSTYEDVARDT-NRGHTVAAVADCFCLAKDAGFKVVAHMMPDLP 307 (564)
Q Consensus 239 tr---------Pd~i~~e~L~~L~~~G~~rvs-iGvQS~~d~vL~~i-~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLP 307 (564)
++ ....+++.++.|+++|++++. .|+|++++++++.+ +++.+.++..++++.++++|+++++.+|+|+|
T Consensus 91 s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~ 170 (309)
T TIGR00423 91 SPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHV 170 (309)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCC
Confidence 22 222358999999999999995 79999999999988 56779999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec----CCCh-hHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYPTLVI----RGTG-LYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~----~GT~-L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
||.++..+++..+. +++++...+.++.|. +||| |... ..++++.++...+++.+.-++|
T Consensus 171 -Et~ed~~~~l~~lr---~l~~~~~~f~~fiP~~f~~~~t~~l~~~----~~~~~~~~e~lr~iA~~Rl~lp 234 (309)
T TIGR00423 171 -ENPEHRVEHLLRIR---KIQEKTGGFTEFIPLPFQPENNPYLEGE----VRKGASGIDDLKVIAISRILLN 234 (309)
T ss_pred -CCHHHHHHHHHHHH---hhchhhCCeeeEEeeeecCCCChhhccC----CCCCCCHHHHHHHHHHHHHhcC
Confidence 89999999998886 466666555555553 5888 5321 2467899999999999888887
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-16 Score=163.42 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCC-CchhhHHHhhhcccCCcccEEEEEE
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGH-TSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~-~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
+-.+++.....+.+.| +..| +.||.+..++.+++.++++.|++..... +.. . ...++...
T Consensus 73 s~eei~~~~~~~~~~G-----~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~------------~-s~~ei~~~ 134 (340)
T TIGR03699 73 SVEEILQKIEELVAYG-----GTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS------------F-SPVEIVYI 134 (340)
T ss_pred CHHHHHHHHHHHHHcC-----CcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC------------C-CHHHHHHH
Confidence 3355555555566655 4444 5677666789999999999998765311 100 0 00111111
Q ss_pred eeC-CCCCHHHHHHHHHcCCCeEE-EccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHH
Q 008466 239 TRP-DYCLGPHLRQMLSYGCTRLE-IGVQSTYEDVARDTNR-GHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDL 315 (564)
Q Consensus 239 trP-d~i~~e~L~~L~~~G~~rvs-iGvQS~~d~vL~~i~R-ght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~ 315 (564)
.+. ...+++.++.|+++|++++. .|+||+++++++.+.+ ++|.++.+++++.++++|+++++++|+|+ |||+++..
T Consensus 135 ~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~ 213 (340)
T TIGR03699 135 AKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRI 213 (340)
T ss_pred hccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHH
Confidence 111 22348999999999999998 5899999999999865 57999999999999999999999999997 99999999
Q ss_pred HHHHHHhcCCCCCCCeEEEeeeeec----CCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 316 ESFREFFESPLFRADGLKIYPTLVI----RGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 316 ~t~~~~~~~~~l~pd~i~iy~l~v~----~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+++..+. +++++.+.+.++.|. +||||++ .++++.++.+.+++.+.-.+|.
T Consensus 214 ~~l~~l~---~l~~~~~~~~~fIP~~f~p~~tpl~~------~~~~~~~e~l~~iA~~Rl~lp~ 268 (340)
T TIGR03699 214 EHLERIR---ELQDKTGGFTAFIPWTFQPGNTELGK------KRPATSTEYLKVLAISRIFLDN 268 (340)
T ss_pred HHHHHHH---HhchhhCCeeEEEeecccCCCCcccC------CCCCCHHHHHHHHHHHHHcCCC
Confidence 9988886 466766555555543 6999864 3468899999999999998875
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-15 Score=156.99 Aligned_cols=180 Identities=12% Similarity=0.099 Sum_probs=140.5
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEEEEcC-CCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFILMGG-TFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I~~GG-Tpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
-+..+++.......+.|. .++ ++.+|| .|+..+.+++..+++.+++. . +.+.
T Consensus 76 ls~eEI~~~a~~~~~~G~--~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~-~---------------------i~v~-- 128 (345)
T PRK15108 76 MEVEQVLESARKAKAAGS--TRF-CMGAAWKNPHERDMPYLEQMVQGVKAM-G---------------------LETC-- 128 (345)
T ss_pred CCHHHHHHHHHHHHHcCC--CEE-EEEecCCCCCcchHHHHHHHHHHHHhC-C---------------------CEEE--
Confidence 344566655555666663 223 222344 45556667777777777641 1 1232
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESF 318 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~ 318 (564)
+....++.+.++.|+++|++++.++++| +++....+..+|+.++.++.++.++++|+++++++|+|+ |||+++..+.+
T Consensus 129 ~s~G~ls~e~l~~LkeAGld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl-gEt~ed~v~~~ 206 (345)
T PRK15108 129 MTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL-GETVKDRAGLL 206 (345)
T ss_pred EeCCcCCHHHHHHHHHcCCCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeC-CCCHHHHHHHH
Confidence 2344689999999999999999999999 899999998899999999999999999999999999999 99999999999
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
..+.++ .-.++.|.+..+.|.+||||+. .++.++.+.+..++.+.-.+|.
T Consensus 207 ~~l~~l-~~~~~~ip~~~~~P~~gTpl~~------~~~~~~~e~lr~iAi~Rl~lp~ 256 (345)
T PRK15108 207 LQLANL-PTPPESVPINMLVKVKGTPLAD------NDDVDAFDFIRTIAVARIMMPT 256 (345)
T ss_pred HHHHhc-cCCCCEEEeCCccCCCCCCCCC------CCCCCHHHHHHHHHHHHHHCCC
Confidence 888642 1157899999999999999864 2457999999999999888886
|
|
| >COG1032 Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=166.02 Aligned_cols=114 Identities=23% Similarity=0.305 Sum_probs=102.7
Q ss_pred cEEEEEE-eeCCCCC-HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHH-HHHHHHHcCCcEEEEEecCCCC
Q 008466 232 CIGMTIE-TRPDYCL-GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVAD-CFCLAKDAGFKVVAHMMPDLPN 308 (564)
Q Consensus 232 ~~eitiE-trPd~i~-~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~-ai~~lr~~G~~v~~~lI~GLPg 308 (564)
...+++. .|+|.++ ++.+..++.+|+.++.+|+||+++++|+.++|+++.+++.+ +++.++++|+++..++|+|+||
T Consensus 284 ~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~~~~~~i~G~pg 363 (490)
T COG1032 284 RVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLRVKLYFIVGLPG 363 (490)
T ss_pred eeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCceeeEEEEEcCCC
Confidence 3567777 8999998 99999999999999999999999999999999999999995 9999999999999999999999
Q ss_pred CCHHHHHHHH---HHHhcCCCCCCC-eEEEeeeeecCCChhHHH
Q 008466 309 VGVERDLESF---REFFESPLFRAD-GLKIYPTLVIRGTGLYEL 348 (564)
Q Consensus 309 et~e~~~~t~---~~~~~~~~l~pd-~i~iy~l~v~~GT~L~~~ 348 (564)
||.+++.+++ +.+. ..++. .+.++++.+.|||++++.
T Consensus 364 et~ed~~~t~~~~~~~~---~~~~~~~~~~~~~~p~p~t~~~~~ 404 (490)
T COG1032 364 ETEEDVKETIELAKFIK---KLGPKLYVSPSPFVPLPGTPLQEM 404 (490)
T ss_pred CCHHHHHHHHHHHHHHH---HhCccceEEEeeeeCCCCCchhhc
Confidence 9999999983 4443 45664 899999999999999875
|
|
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=157.24 Aligned_cols=185 Identities=12% Similarity=0.169 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET- 239 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt- 239 (564)
+..++.....+....|.. +.++.||.+..++.+++.++++.|++.++. +.+...+
T Consensus 74 ~~eeI~~~~~~a~~~g~~----~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~--------------------i~~~a~s~ 129 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGT----QILFQGGVHPKLKIEWYENLVSHIAQKYPT--------------------ITIHGFSA 129 (348)
T ss_pred CHHHHHHHHHHHHHcCCC----EEEEecCCCCCCCHHHHHHHHHHHHHHCCC--------------------cEEEEccH
Confidence 445666666667777631 334678888889999999999999998762 1222111
Q ss_pred -------eCCCCC-HHHHHHHHHcCCCeEE-EccCCCCHHHHHhc-CCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCC
Q 008466 240 -------RPDYCL-GPHLRQMLSYGCTRLE-IGVQSTYEDVARDT-NRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNV 309 (564)
Q Consensus 240 -------rPd~i~-~e~L~~L~~~G~~rvs-iGvQS~~d~vL~~i-~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPge 309 (564)
+-..++ +|.|+.|+++|++++. +|+||+++++++.+ +++.|.++.+++++.++++|+++++.+|+|+ +|
T Consensus 130 ~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~-~E 208 (348)
T PRK08445 130 VEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGT-VE 208 (348)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecC-CC
Confidence 111233 8999999999999995 89999999999999 7799999999999999999999999999997 59
Q ss_pred CHHHHHHHHHHHhcCCCCCCCeE--EEee--eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 310 GVERDLESFREFFESPLFRADGL--KIYP--TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 310 t~e~~~~t~~~~~~~~~l~pd~i--~iy~--l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
|+++..+.+..+.+ ++++.. ...+ +.+.+||||+.. ....++++.++.+..++.+.-.+|.
T Consensus 209 t~edr~~~l~~lre---Lq~~~~g~~~fi~~~~~p~~tpl~~~--~~~~~~~~~~e~Lr~iAv~Rl~l~~ 273 (348)
T PRK08445 209 NDEEIIEHWERIRD---LQDETGGFRAFILWSFQPDNTPLKEE--IPEIKKQSSNRYLRLLAVSRLFLDN 273 (348)
T ss_pred CHHHHHHHHHHHHH---HHHHhCCeeEEeccccCCCCCccccc--CCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 99999999888864 444432 2222 334589999752 1134568999999999988888875
|
|
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.6e-14 Score=152.17 Aligned_cols=217 Identities=14% Similarity=0.103 Sum_probs=159.8
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSL 194 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l 194 (564)
+|+- ++|+++|.|| .|....... ....-.-.+++.+...+.+.|+. --.+++|.+|...
T Consensus 88 LyiS-N~C~n~C~YC------gfs~~n~~i-----------~r~~Ls~EEI~~ea~~~~~~G~~---~i~LvsGe~p~~~ 146 (469)
T PRK09613 88 LYIS-NYCVNNCVYC------GFRRSNKEI-----------KRKKLTQEEIREEVKALEDMGHK---RLALVAGEDPPNC 146 (469)
T ss_pred cccc-CCCCCCCccC------CCccCCCCC-----------CceECCHHHHHHHHHHHHHCCCC---EEEEEeCCCCCCC
Confidence 4553 7888999999 664111100 01122445556666667777853 2233578888889
Q ss_pred CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHh
Q 008466 195 PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARD 274 (564)
Q Consensus 195 ~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~ 274 (564)
+.+|+.++++.|++..... .....++++.-| ++.+.++.|+++|++++.+..||.+.++++.
T Consensus 147 ~~eyi~e~i~~I~~~~~~~----------------g~i~~v~inig~--lt~eey~~LkeaGv~~~~l~qETY~~ety~~ 208 (469)
T PRK09613 147 DIEYILESIKTIYSTKHGN----------------GEIRRVNVNIAP--TTVENYKKLKEAGIGTYQLFQETYHKPTYEK 208 (469)
T ss_pred CHHHHHHHHHHHHHhcccc----------------CcceeeEEEeec--CCHHHHHHHHHcCCCEEEeccccCCHHHHHh
Confidence 9999999999998754210 112357777766 8999999999999999999999999999999
Q ss_pred cC---CCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcC---CCCCCCeEEEeeeeecCCChhHH
Q 008466 275 TN---RGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFES---PLFRADGLKIYPTLVIRGTGLYE 347 (564)
Q Consensus 275 i~---Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~---~~l~pd~i~iy~l~v~~GT~L~~ 347 (564)
++ ..|+.++-++++++++++||. |++..|+|||+... +.+.++..+..+ -..+|+.|++-.+.|.+||||.+
T Consensus 209 ~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge~~~-E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~ 287 (469)
T PRK09613 209 MHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYKF-EVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLEN 287 (469)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCCCHH-HHHHHHHHHHHHHHhhCCCCccccccceecCCCCCccc
Confidence 85 468999999999999999998 99999999976444 445544444321 12368889999999999999842
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 348 LWKTGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 348 ~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
.-.++++++.+.+++.+.-.+|..
T Consensus 288 -----~~~~vsd~e~lriiA~~RL~~P~~ 311 (469)
T PRK09613 288 -----FPYLVSDEDFKKIVAILRLAVPYT 311 (469)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHCCCC
Confidence 113579999999999888888753
|
|
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-15 Score=156.77 Aligned_cols=182 Identities=13% Similarity=0.108 Sum_probs=139.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE- 238 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE- 238 (564)
+..+++....+....| ++.+ +.||....++.+++.++++.|++.++. +.+..-
T Consensus 80 ~~eeI~~~a~~~~~~G-----~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~--------------------i~i~~~~ 134 (351)
T TIGR03700 80 SLEEIVARVKEAYAPG-----ATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD--------------------LHVKAFT 134 (351)
T ss_pred CHHHHHHHHHHHHHCC-----CcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--------------------ceEEeCC
Confidence 3455555555556566 4444 456655568889999999999987652 111110
Q ss_pred --------eeCCCCCHHHHHHHHHcCCCeEE-EccCCCCHHHHHhcCCCC-CHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 008466 239 --------TRPDYCLGPHLRQMLSYGCTRLE-IGVQSTYEDVARDTNRGH-TVAAVADCFCLAKDAGFKVVAHMMPDLPN 308 (564)
Q Consensus 239 --------trPd~i~~e~L~~L~~~G~~rvs-iGvQS~~d~vL~~i~Rgh-t~~~~~~ai~~lr~~G~~v~~~lI~GLPg 308 (564)
......+++.++.|+++|++++. .|+||+++++++.+.++| +.++.+++++.++++|+++++.+|+|+ |
T Consensus 135 ~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl-g 213 (351)
T TIGR03700 135 AVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGH-I 213 (351)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeC-C
Confidence 11233467889999999999997 699999999999999976 668889999999999999999999998 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec----CCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 309 VGVERDLESFREFFESPLFRADGLKIYPTLVI----RGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 309 et~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~----~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
||+++..+++..+. +++++..-+..+.|. +||||... .+.+++.++...+++.+.-.+|.
T Consensus 214 Et~edrv~~l~~Lr---~l~~~~~~f~~fiP~~f~~~~tpl~~~----~~~~~~~~e~lr~iA~~Rl~l~~ 277 (351)
T TIGR03700 214 ETPAHRVDHMLRLR---ELQDETGGFQAFIPLAFQPDNNRLNRL----LAKGPTGLDDLKTLAVSRLYLDN 277 (351)
T ss_pred CCHHHHHHHHHHHH---HhhHhhCCceEEEeecccCCCCcccCC----CCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999998887 456666566666666 59998431 23568999999999998888874
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-15 Score=153.80 Aligned_cols=192 Identities=12% Similarity=0.089 Sum_probs=140.4
Q ss_pred cchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHH---------HHHHHHHHHHhcCCCchhhHHHhhhcccCC
Q 008466 159 YNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYR---------DYFIRNLHDALSGHTSANVEEAVTYSEHGA 229 (564)
Q Consensus 159 ~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l---------~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~ 229 (564)
..+..+++.+..++.+.|. -+.+|.||.+..+..++. ..+++.+++... .+.
T Consensus 40 ~ls~eei~~~~~~~~~~G~----~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~--------~~~------- 100 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGC----TEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCE--------LAL------- 100 (336)
T ss_pred cCCHHHHHHHHHHHHHCCC----CEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHH--------HHh-------
Confidence 4456777777777777774 244577776655542221 222333322111 000
Q ss_pred cccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCC---CCCHHHHHHHHHHHHHcCCcEEEEEecCC
Q 008466 230 TKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNR---GHTVAAVADCFCLAKDAGFKVVAHMMPDL 306 (564)
Q Consensus 230 ~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~R---ght~~~~~~ai~~lr~~G~~v~~~lI~GL 306 (564)
..++...++|..++++.++.|+++|+. +.+.+||+++.+++.++| +++.++.+++++.+++.|+++..++|+|+
T Consensus 101 --~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~Gi~~~~~~i~G~ 177 (336)
T PRK06245 101 --EEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKLKIPFTTGILIGI 177 (336)
T ss_pred --hcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHcCCceeeeeeeEC
Confidence 012334588999999999999999864 577789999999987754 66789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcC-CCC-CCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEE
Q 008466 307 PNVGVERDLESFREFFES-PLF-RADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRV 379 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~-~~l-~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri 379 (564)
|||.+++.+++..+.+. ... +++.+.++++.|.+||++.. ..+++.++..++++.+...+|+.+.+
T Consensus 178 -gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~------~~~~s~~e~l~~ia~~Rl~l~~~i~i 245 (336)
T PRK06245 178 -GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMEN------HPEPSLEEMLRVVALARLILPPDISI 245 (336)
T ss_pred -CCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCccc------CCCcCHHHHHHHHHHHHHHCCCCceE
Confidence 99999999988887654 122 36889999999999999852 34688999999999999999876543
|
|
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=153.47 Aligned_cols=173 Identities=12% Similarity=0.071 Sum_probs=136.4
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEE-EEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEF-ILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~-I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
.+..+++.+...+.+.| ++. ++.||.+ ++.+.++.+++.+..... ..+.
T Consensus 63 ~s~eeI~eea~~~~~~G-----v~~~~lsgG~~--~~~~el~~i~e~I~~~~~-----------------------~~~~ 112 (350)
T PRK06267 63 RRVESILAEAILMKRIG-----WKLEFISGGYG--YTTEEINDIAEMIAYIQG-----------------------CKQY 112 (350)
T ss_pred CCHHHHHHHHHHHHHcC-----CCEEEEecCCC--CCHHHHHHHHHHHHHhhC-----------------------CceE
Confidence 35566666666666666 333 3567766 667788888887765321 1122
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESF 318 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~ 318 (564)
.+...++.+.+..+...|+ ..|+||.+++++..++++++.++..++++.++++|+++++++|+|+ |++.+++.+++
T Consensus 113 ~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi~v~~g~IiGl-gEt~ed~~~~l 188 (350)
T PRK06267 113 LNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDKIKEMLLKAKDLGLKTGITIILGL-GETEDDIEKLL 188 (350)
T ss_pred eecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEeC-CCCHHHHHHHH
Confidence 3344456666666666665 5699999999999999999999999999999999999999999997 99999999998
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+.+. +++++.+.++++.|.||||++. .+++++++++.+++.+.-.+|.
T Consensus 189 ~~l~---~l~~d~v~~~~L~P~pGTp~~~------~~~~s~~e~lr~ia~~Rl~lP~ 236 (350)
T PRK06267 189 NLIE---ELDLDRITFYSLNPQKGTIFEN------KPSVTTLEYMNWVSSVRLNFPK 236 (350)
T ss_pred HHHH---HcCCCEEEEEeeeECCCCcCCC------CCCCCHHHHHHHHHHHHHHCCC
Confidence 8886 5789999999999999999864 4678999999999999888874
|
|
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=151.21 Aligned_cols=136 Identities=13% Similarity=0.082 Sum_probs=113.1
Q ss_pred EEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC----CHHHHHHHHHHHHHcCCcEEEEEecCCCCCC
Q 008466 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH----TVAAVADCFCLAKDAGFKVVAHMMPDLPNVG 310 (564)
Q Consensus 235 itiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh----t~~~~~~ai~~lr~~G~~v~~~lI~GLPget 310 (564)
+...++|..++++.+..|+++|+. +.+.+||.++.+++.+++.| +.++.+++++.+++.|+++++++|+|+ |||
T Consensus 99 ~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~~~s~~i~G~-gEt 176 (322)
T TIGR03550 99 LLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGI-GET 176 (322)
T ss_pred CccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCCCccceeeEeC-CCC
Confidence 344578889999999999999986 48999999999877666555 568899999999999999999999997 999
Q ss_pred HHHHHHHHHHHhcC--CCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceE
Q 008466 311 VERDLESFREFFES--PLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTR 378 (564)
Q Consensus 311 ~e~~~~t~~~~~~~--~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ir 378 (564)
.++..+++..+.++ ...+++.+.+.++.|.|||||+. .++++..+.+.+++.+.-.+|+...
T Consensus 177 ~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~------~~~~s~~e~lr~iAv~Rl~l~~~~~ 240 (322)
T TIGR03550 177 REERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMEN------HPEPSLEEMLRTVAVARLILPPDIS 240 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccC------CCCCCHHHHHHHHHHHHHHcCCCCe
Confidence 99999998887643 11226677888999999999863 3568999999999999888976543
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-14 Score=131.99 Aligned_cols=135 Identities=24% Similarity=0.272 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHH-HHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 161 PYVQARSRIDQL-KRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 161 ~y~~~l~r~~~l-~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
+-.+++.....+ ...| +..+ ++||+|+..+... .++..+.+.. .....+++.
T Consensus 29 ~~e~i~~~~~~~~~~~~-----~~~i~~~~gep~~~~~~~--~~~~~~~~~~-------------------~~~~~i~~~ 82 (166)
T PF04055_consen 29 SPEEILEEIKELKQDKG-----VKEIFFGGGEPTLHPDFI--ELLELLRKIK-------------------KRGIRISIN 82 (166)
T ss_dssp HHHHHHHHHHHHHHHTT-----HEEEEEESSTGGGSCHHH--HHHHHHHHCT-------------------CTTEEEEEE
T ss_pred CHHHHHHHHHHHhHhcC-----CcEEEEeecCCCcchhHH--HHHHHHHHhh-------------------ccccceeee
Confidence 344444444555 3433 5555 6899998887642 2333333321 134789999
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHH-HHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYED-VARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLES 317 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~-vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t 317 (564)
|++...+++.++.|+++|+++|.+|+||.+++ +++.++++++.+++.++++.++++|++....+|+|+||+|.+++.++
T Consensus 83 t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~ 162 (166)
T PF04055_consen 83 TNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEET 162 (166)
T ss_dssp EESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHH
T ss_pred ccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHH
Confidence 99998889999999999999999999999999 99999999999999999999999999888899999999999998888
Q ss_pred HHHH
Q 008466 318 FREF 321 (564)
Q Consensus 318 ~~~~ 321 (564)
++++
T Consensus 163 ~~~i 166 (166)
T PF04055_consen 163 IRFI 166 (166)
T ss_dssp HHHH
T ss_pred hCcC
Confidence 8764
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >TIGR00510 lipA lipoate synthase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=140.74 Aligned_cols=168 Identities=15% Similarity=0.092 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCC---CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 163 VQARSRIDQLKRLGHSVDKVEFILMGGTFMSL---PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 163 ~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l---~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
.+.+.....+...|. -+.++.|++-..+ ..+.+.++++.|++..+ ++.++.
T Consensus 94 eei~~~a~~~~~~Gl----kevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p----------------------~i~Iev 147 (302)
T TIGR00510 94 EEPAKLAETIKDMGL----KYVVITSVDRDDLEDGGASHLAECIEAIREKLP----------------------NIKIET 147 (302)
T ss_pred HHHHHHHHHHHHCCC----CEEEEEeecCCCcccccHHHHHHHHHHHHhcCC----------------------CCEEEE
Confidence 334444445566663 1334544432222 34566777777765433 123443
Q ss_pred -eCCCC-CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHH
Q 008466 240 -RPDYC-LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDL 315 (564)
Q Consensus 240 -rPd~i-~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~ 315 (564)
.||.. +.+.++.|+++|++.+..++||. +++++.|+|+++.++.++.++.+++. |+.+.+++|+|| |||.+++.
T Consensus 148 l~~d~~g~~e~l~~l~~aG~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl-GETeee~~ 225 (302)
T TIGR00510 148 LVPDFRGNIAALDILLDAPPDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGL-GETNEEIK 225 (302)
T ss_pred eCCcccCCHHHHHHHHHcCchhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEEC-CCCHHHHH
Confidence 44422 68899999999999999999998 88999999999999999999999998 899999999999 99999999
Q ss_pred HHHHHHhcCCCCCCCeEEEeeee-e-cCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 316 ESFREFFESPLFRADGLKIYPTL-V-IRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 316 ~t~~~~~~~~~l~pd~i~iy~l~-v-~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
++++.+. +++++.+.+.+++ | .+++|+.+ |..++.-+..+.++
T Consensus 226 etl~~Lr---elg~d~v~igqYl~p~~~~~~v~~------~~~p~~f~~~~~~a 270 (302)
T TIGR00510 226 QTLKDLR---DHGVTMVTLGQYLRPSRRHLPVKR------YVSPEEFDYYRSVA 270 (302)
T ss_pred HHHHHHH---hcCCCEEEeecccCCCCCCCcccc------CCCHHHHHHHHHHH
Confidence 9999997 6789999999865 5 56777765 43444444444444
|
The family shows strong sequence conservation. |
| >PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=140.88 Aligned_cols=156 Identities=16% Similarity=0.138 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCC---CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEE
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFILMGGTFMS---LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTI 237 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~---l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eiti 237 (564)
+..+.+.....+...|. -+.++.||+-.. .+.+++.++++.|++..+ .+.+
T Consensus 88 ~~eei~~~a~~~~~~G~----keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p----------------------~~~I 141 (290)
T PRK12928 88 DPDEPERVAEAVAALGL----RYVVLTSVARDDLPDGGAAHFVATIAAIRARNP----------------------GTGI 141 (290)
T ss_pred CHHHHHHHHHHHHHCCC----CEEEEEEEeCCcccccCHHHHHHHHHHHHhcCC----------------------CCEE
Confidence 34455544445666662 133344443222 345678888888876443 2344
Q ss_pred Ee-eCCCC--CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcC--CcEEEEEecCCCCCCHH
Q 008466 238 ET-RPDYC--LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAG--FKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 238 Et-rPd~i--~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G--~~v~~~lI~GLPget~e 312 (564)
+. .|+.+ ..+.|..|+++|+..+..++||. +++++.|+|++|.++..+.++.+++.| +.+.++||+|+ |||.+
T Consensus 142 ~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~-~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~e 219 (290)
T PRK12928 142 EVLTPDFWGGQRERLATVLAAKPDVFNHNLETV-PRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETED 219 (290)
T ss_pred EEeccccccCCHHHHHHHHHcCchhhcccCcCc-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHH
Confidence 53 66665 57899999999999999999985 999999999999999999999999999 99999999999 99999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeee--cCCChhHH
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLV--IRGTGLYE 347 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v--~~GT~L~~ 347 (564)
++.++++.+. ++++|.+.+.+++. ....|+.+
T Consensus 220 d~~etl~~Lr---el~~d~v~i~~Yl~p~~~~~~v~~ 253 (290)
T PRK12928 220 EVIETLRDLR---AVGCDRLTIGQYLRPSLAHLPVQR 253 (290)
T ss_pred HHHHHHHHHH---hcCCCEEEEEcCCCCCccCCceee
Confidence 9999999997 68899999998875 45666654
|
|
| >PRK00955 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-13 Score=147.81 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=91.7
Q ss_pred EEEEeeCCCC----CHHHHHHHHHcCC-CeEEEccCCCCHHHHHhcCCCCCHHHHHHH----HHHHHHcCCc--EEEEEe
Q 008466 235 MTIETRPDYC----LGPHLRQMLSYGC-TRLEIGVQSTYEDVARDTNRGHTVAAVADC----FCLAKDAGFK--VVAHMM 303 (564)
Q Consensus 235 itiEtrPd~i----~~e~L~~L~~~G~-~rvsiGvQS~~d~vL~~i~Rght~~~~~~a----i~~lr~~G~~--v~~~lI 303 (564)
|+...|+|.+ +++.++.|.+..+ ..+.||+||+++++|+.|||+ +.+++.+. .+.+++.|++ +..+||
T Consensus 407 isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfI 485 (620)
T PRK00955 407 IRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLM 485 (620)
T ss_pred eecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEE
Confidence 3444577774 3457888887643 479999999999999999998 54444333 3556678887 778999
Q ss_pred cCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCC
Q 008466 304 PDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGR 353 (564)
Q Consensus 304 ~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~ 353 (564)
+|+||||.+++.++++++. +++++.+.+.+++|.|||+-+.++-.|.
T Consensus 486 vGfPGETeEDf~et~eflk---el~~~~~qV~~fTP~PGT~At~Myytg~ 532 (620)
T PRK00955 486 SSHPGSTLEDAIELAEYTK---DLGYQPEQVQDFYPTPGTLSTTMYYTGL 532 (620)
T ss_pred EECCCCCHHHHHHHHHHHH---HcCCCcceeeeeecCCCcchhhccccCC
Confidence 9999999999999999986 5778888999999999999999876664
|
|
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=7e-13 Score=141.37 Aligned_cols=184 Identities=11% Similarity=0.077 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcC-CCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGG-TFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GG-Tpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
+..+++....+..+.| +..+ +.|| .|..-..+++.++++.+++.++. +.+..-
T Consensus 92 s~eeI~~~a~~a~~~G-----~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~--------------------i~i~a~ 146 (371)
T PRK07360 92 TIAEILEKAAEAVKRG-----ATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD--------------------IHLHAF 146 (371)
T ss_pred CHHHHHHHHHHHHhCC-----CCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC--------------------cceeeC
Confidence 4456666666667777 3444 4466 45433478888899999876542 111110
Q ss_pred ---------eeCCCCCHHHHHHHHHcCCCeEE-EccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 008466 239 ---------TRPDYCLGPHLRQMLSYGCTRLE-IGVQSTYEDVARDTNRG-HTVAAVADCFCLAKDAGFKVVAHMMPDLP 307 (564)
Q Consensus 239 ---------trPd~i~~e~L~~L~~~G~~rvs-iGvQS~~d~vL~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~lI~GLP 307 (564)
......+.+.++.|+++|++++. -|.+++++++.+.+..+ .|.++.+++++.++++|+++++.+|+|+
T Consensus 147 s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~- 225 (371)
T PRK07360 147 SPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGH- 225 (371)
T ss_pred CHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeC-
Confidence 03445678899999999999984 56788889999888775 5999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC----CChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYPTLVIR----GTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~----GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
|||+++..+.+..+. +++++...+.++.|.+ ||||+.... ...+.+..+.+.+++.+.-.+|.
T Consensus 226 gEt~edrv~~l~~lr---~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~--~~~~~~~~~~lr~iAi~Rl~lp~ 292 (371)
T PRK07360 226 VETPEHRIDHLLILR---EIQQETGGITEFVPLPFVHENAPLYERGR--VKGGAPGLEDLLLYAVSRIFLGN 292 (371)
T ss_pred CCCHHHHHHHHHHHH---HhchhhCCeeEEEeccccCCCCccccccc--cCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999998887 5778887777777744 999975321 11235667779999988888886
|
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=138.36 Aligned_cols=204 Identities=11% Similarity=0.123 Sum_probs=152.8
Q ss_pred cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEE-EcCCCCCCCHHH
Q 008466 120 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFIL-MGGTFMSLPADY 198 (564)
Q Consensus 120 PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~-~GGTpt~l~~~~ 198 (564)
..|...|.|| .|.... + .+ + ...-+..+++.+..+..+.|.. +..+ +|+.|. .+.++
T Consensus 57 N~C~~~C~FC------af~~~~----~-~~---~---~y~ls~eeI~~~a~~a~~~G~~----ei~iv~G~~p~-~~~e~ 114 (353)
T PRK08444 57 NICADVCKFC------AFSAHR----K-NP---N---PYTMSHEEILEIVKNSVKRGIK----EVHIVSAHNPN-YGYEW 114 (353)
T ss_pred cccccCCccC------CCccCC----C-CC---c---cccCCHHHHHHHHHHHHHCCCC----EEEEeccCCCC-CCHHH
Confidence 4577999999 664111 1 11 0 0122446666666667777731 3334 555554 48889
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE--------e-eCCCCCHHHHHHHHHcCCCeEEE-ccCCCC
Q 008466 199 RDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE--------T-RPDYCLGPHLRQMLSYGCTRLEI-GVQSTY 268 (564)
Q Consensus 199 l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE--------t-rPd~i~~e~L~~L~~~G~~rvsi-GvQS~~ 268 (564)
..++++.|++.++. +.+..- + .-....+|.+..|+++|++++.- |.|.++
T Consensus 115 y~e~ir~Ik~~~p~--------------------i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~ 174 (353)
T PRK08444 115 YLEIFKKIKEAYPN--------------------LHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFD 174 (353)
T ss_pred HHHHHHHHHHHCCC--------------------ceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcC
Confidence 99999999987652 111110 1 22234679999999999999988 699999
Q ss_pred HHHHHhcCCCCCH-HHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec----CCC
Q 008466 269 EDVARDTNRGHTV-AAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVI----RGT 343 (564)
Q Consensus 269 d~vL~~i~Rght~-~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~----~GT 343 (564)
+++.+.+..+|+. ++..+..+.++++|+++++.+|+|++ ||+++..+.+..+. +++.+..-+..+.|. +||
T Consensus 175 ~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~g-Et~edrv~hl~~Lr---~Lq~~t~gf~~fIp~~f~~~~t 250 (353)
T PRK08444 175 EEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHI-ENREHRIDHMLRLR---DLQDKTGGFNAFIPLVYQRENN 250 (353)
T ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecC-CCHHHHHHHHHHHH---HhccccCCceEEEecccCCCCC
Confidence 9999999997755 78888889999999999999999995 99999999998886 577888888888988 899
Q ss_pred hhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 344 GLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 344 ~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
||.. .++++.++.+..++-+.-.+|.
T Consensus 251 ~l~~------~~~~~~~e~Lr~iAi~Rl~L~~ 276 (353)
T PRK08444 251 YLKV------EKFPSSQEILKTIAISRILLDN 276 (353)
T ss_pred cCCC------CCCCCHHHHHHHHHHHHHhcCC
Confidence 9852 4568999999999988888864
|
|
| >PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=133.84 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=116.0
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCC---CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEE
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFILMGGTFM---SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMT 236 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt---~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eit 236 (564)
.+..+++.....+...|. -+.++.||+-. ..+.+++.++++.|.+.++. +.+.
T Consensus 80 ~~~eeI~~ea~~l~~~G~----kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~--------------------irI~ 135 (289)
T PRK05481 80 LDPDEPERVAEAVARMGL----KYVVITSVDRDDLPDGGAQHFAETIRAIRELNPG--------------------TTIE 135 (289)
T ss_pred CCHHHHHHHHHHHHHCCC----CEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCC--------------------cEEE
Confidence 445666666667777773 23445555422 23456777888877764431 1233
Q ss_pred EEeeCCCC-CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHH
Q 008466 237 IETRPDYC-LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVER 313 (564)
Q Consensus 237 iEtrPd~i-~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~ 313 (564)
+- .|+.. ..+.|..|+++|+..+..+.+|. +++++.|+|++|.++..++++.+++. |+.+.+++|+|+ |||.++
T Consensus 136 ~l-~~~~~~~~e~L~~l~~ag~~i~~~~~ets-~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGf-GET~ed 212 (289)
T PRK05481 136 VL-IPDFRGRMDALLTVLDARPDVFNHNLETV-PRLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGL-GETDEE 212 (289)
T ss_pred EE-ccCCCCCHHHHHHHHhcCcceeeccccCh-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEEC-CCCHHH
Confidence 32 33333 35788889999999999999995 89999999999999999999999999 999999999999 999999
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 314 DLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 314 ~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
+.++++.+. ++++|.+.++++.+
T Consensus 213 ~~~tl~~lr---el~~d~v~if~Ys~ 235 (289)
T PRK05481 213 VLEVMDDLR---AAGVDILTIGQYLQ 235 (289)
T ss_pred HHHHHHHHH---hcCCCEEEEEccCC
Confidence 999999987 58899999999887
|
|
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-12 Score=131.10 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=106.2
Q ss_pred EEEEcCCC---CCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCC-CHHHHHHHHHcCCC
Q 008466 184 FILMGGTF---MSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYC-LGPHLRQMLSYGCT 258 (564)
Q Consensus 184 ~I~~GGTp---t~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i-~~e~L~~L~~~G~~ 258 (564)
.++.+|+- .....+++.++++.|++..+ .+.++. .||.+ +++.|+.|+++|++
T Consensus 150 vvltSg~rddl~D~ga~~~~elir~Ir~~~P----------------------~i~Ie~L~pdf~~d~elL~~L~eAG~d 207 (349)
T PLN02428 150 VVLTSVDRDDLPDGGSGHFAETVRRLKQLKP----------------------EILVEALVPDFRGDLGAVETVATSGLD 207 (349)
T ss_pred EEEEEcCCCCCCcccHHHHHHHHHHHHHhCC----------------------CcEEEEeCccccCCHHHHHHHHHcCCC
Confidence 34555543 23456677777777775433 356665 68766 89999999999999
Q ss_pred eEEEccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEe
Q 008466 259 RLEIGVQSTYEDVARDTN-RGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~-Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
.+..++|| .+++++.|+ ++++.++.+++++.+++. |+.+.++||+|| |||.+++.++++.+. ++++|.+.+-
T Consensus 208 ~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lr---elgvd~vtig 282 (349)
T PLN02428 208 VFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLR---AAGVDVVTFG 282 (349)
T ss_pred EEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHH---HcCCCEEeec
Confidence 99999998 789999999 799999999999999999 999999999999 999999999999987 6789999987
Q ss_pred eee
Q 008466 336 PTL 338 (564)
Q Consensus 336 ~l~ 338 (564)
+++
T Consensus 283 qyL 285 (349)
T PLN02428 283 QYL 285 (349)
T ss_pred ccc
Confidence 654
|
|
| >PRK01254 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.5e-12 Score=138.85 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=89.6
Q ss_pred EEEEEe-eCCCC---CHHHHHHHHHcCC-CeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHc-CCc--EEEEEe
Q 008466 234 GMTIET-RPDYC---LGPHLRQMLSYGC-TRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDA-GFK--VVAHMM 303 (564)
Q Consensus 234 eitiEt-rPd~i---~~e~L~~L~~~G~-~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~-G~~--v~~~lI 303 (564)
.+.|-. .|..+ +++.|+.|.+..| ..+.|++||+++++|+.|||+ ++.+++.+.++.+++. |.+ +..+||
T Consensus 485 kVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfI 564 (707)
T PRK01254 485 KILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFI 564 (707)
T ss_pred EEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEE
Confidence 344443 34445 4889999999887 499999999999999999997 7889999999999774 654 456999
Q ss_pred cCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC---CChhHHH
Q 008466 304 PDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIR---GTGLYEL 348 (564)
Q Consensus 304 ~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~---GT~L~~~ 348 (564)
+|+||+|.+++.++++++.+. .+.+..+. .++|.| ||.||.-
T Consensus 565 vGhPGeTeeDf~eLaefLkel-~f~~eQVQ--~FTPtP~t~~T~MYyt 609 (707)
T PRK01254 565 SAHPGTTDEDMVNLALWLKKN-RFRLDQVQ--NFYPSPMANATTMYYT 609 (707)
T ss_pred EECCCCCHHHHHHHHHHHHHh-CCCcceee--eeecCCCcCchHHHhc
Confidence 999999999999999888653 45666655 567999 7777753
|
|
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=130.83 Aligned_cols=206 Identities=11% Similarity=0.099 Sum_probs=145.4
Q ss_pred cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHH
Q 008466 120 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADY 198 (564)
Q Consensus 120 PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~ 198 (564)
..|...|.|| .|...+ +.. .....+..+++.+..+. ..| +..| +.||....++.++
T Consensus 76 n~C~~dC~FC------af~~~~----~~~-------~~~~ls~eeI~~~a~~a-~~G-----~~ei~iv~G~~p~~~~e~ 132 (370)
T PRK05926 76 NFCQFNCTFC------SFYAKP----GDP-------KGWFYTPDQLVQSIKEN-PSP-----ITETHIVAGCFPSCNLAY 132 (370)
T ss_pred CCCCCCCCcc------ccccCC----CCc-------ccccCCHHHHHHHHHHH-hcC-----CCEEEEEeCcCCCCCHHH
Confidence 3466899999 664221 111 11223344555554444 445 3334 4455555689999
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe---------eCCCCCHHHHHHHHHcCCCeEEE-ccCCCC
Q 008466 199 RDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET---------RPDYCLGPHLRQMLSYGCTRLEI-GVQSTY 268 (564)
Q Consensus 199 l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt---------rPd~i~~e~L~~L~~~G~~rvsi-GvQS~~ 268 (564)
..++++.|++.++. +.+..-+ .....+++.++.|+++|++++.. |.|+++
T Consensus 133 ~~e~i~~Ik~~~p~--------------------i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~ 192 (370)
T PRK05926 133 YEELFSKIKQNFPD--------------------LHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILV 192 (370)
T ss_pred HHHHHHHHHHhCCC--------------------eeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcC
Confidence 99999999987752 1111111 11223578899999999999997 599999
Q ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee----cCCC
Q 008466 269 EDVARDTNR-GHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV----IRGT 343 (564)
Q Consensus 269 d~vL~~i~R-ght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v----~~GT 343 (564)
+++++.+.. +.|.++.+++++.++++|+++++.+|+|. |||+++..+.+..+. +++++.+-|.++.| .++|
T Consensus 193 e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~-gEt~edrv~~l~~Lr---~Lq~~t~gf~~fIp~~f~~~~t 268 (370)
T PRK05926 193 DEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYH-RETPEDIVTHMSKLR---ALQDKTSGFKNFILLKFASENN 268 (370)
T ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeC-CCCHHHHHHHHHHHH---hcCCccCCeeeeEecccCCCCC
Confidence 999998874 67889999999999999999998888886 999999999998886 68889988888887 6789
Q ss_pred hhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 344 GLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 344 ~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
+|+... . .....+.++...+++-+.-+|+
T Consensus 269 ~l~~~~-~-~~~~~~~~~~lr~~AvaRl~l~ 297 (370)
T PRK05926 269 ALGKRL-R-KMGSRHSIPPASIIAVARLFLD 297 (370)
T ss_pred cccccc-c-ccCCCChHHHHHHHHHHHHhcC
Confidence 885311 0 1223566777888887777776
|
|
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-11 Score=126.01 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=129.6
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-----eCCCCCHHHHHHHHHcCC
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-----RPDYCLGPHLRQMLSYGC 257 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-----rPd~i~~e~L~~L~~~G~ 257 (564)
+.++.||+|+.++.+.+.++++.+.+ .. ....+++.| +|..++++.++.|+++|+
T Consensus 139 ~VilSGGDPl~~~~~~L~~ll~~l~~-i~-------------------~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~ 198 (321)
T TIGR03822 139 EVILTGGDPLVLSPRRLGDIMARLAA-ID-------------------HVKIVRFHTRVPVADPARVTPALIAALKTSGK 198 (321)
T ss_pred EEEEeCCCcccCCHHHHHHHHHHHHh-CC-------------------CccEEEEeCCCcccChhhcCHHHHHHHHHcCC
Confidence 45588999999999999999998875 22 112355555 688899999999999995
Q ss_pred CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE-EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 258 TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA-HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~-~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
.+.|++++.+++.+ .+++.+|++.++++|+.+.+ ..+..-.+++.+.+.+.++.++ +++++...+|.
T Consensus 199 -~v~i~l~~~h~~el--------~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~---~~gv~pyyl~~ 266 (321)
T TIGR03822 199 -TVYVALHANHAREL--------TAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFV---ECRIKPYYLHH 266 (321)
T ss_pred -cEEEEecCCChhhc--------CHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHH---hcCCeeEEEEe
Confidence 58999999876543 27899999999999999765 4454446999999988888887 57888899999
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCCh
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPM 388 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~ 388 (564)
+.+.+||..++ .+.++..+++..+...++-... .|..+|+|.
T Consensus 267 ~~p~~g~~~f~---------~~~~~~~~i~~~l~~~~~g~~~-p~~v~~~~~ 308 (321)
T TIGR03822 267 LDLAPGTAHFR---------VTIEEGQALVRALRGRISGLAQ-PTYVLDIPG 308 (321)
T ss_pred cCCCCCccccc---------CcHHHHHHHHHHHHHhCCCCcc-eeEEEeCCC
Confidence 99999985432 7889999999999998875544 566667665
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=130.76 Aligned_cols=215 Identities=16% Similarity=0.169 Sum_probs=148.9
Q ss_pred cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHH
Q 008466 120 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYR 199 (564)
Q Consensus 120 PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l 199 (564)
..|..+|.|| .|...++ . + ....-...+++....+....|. -+..+.||.....+.+++
T Consensus 53 n~C~~~C~fC------af~~~~~----~-~------~~y~ls~eei~~~a~~~~~~G~----~~i~i~gG~~p~~~~e~~ 111 (350)
T PRK05927 53 NICKIDCTFC------AFYRKPH----S-S------DAYLLSFDEFRSLMQRYVSAGV----KTVLLQGGVHPQLGIDYL 111 (350)
T ss_pred hhhhcCCccC------CccCCCC----C-c------cccccCHHHHHHHHHHHHHCCC----CEEEEeCCCCCCCCHHHH
Confidence 3577999999 6641111 1 0 0112344556665666666663 133356776666899999
Q ss_pred HHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEE-EEeeCCCCCHHHHHHHHHcCCCeEEE-ccCCCCHHHHHhcCC
Q 008466 200 DYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMT-IETRPDYCLGPHLRQMLSYGCTRLEI-GVQSTYEDVARDTNR 277 (564)
Q Consensus 200 ~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eit-iEtrPd~i~~e~L~~L~~~G~~rvsi-GvQS~~d~vL~~i~R 277 (564)
.++++.|++.++......+ ..+++. +.......++|.++.|+++|+.++-= |.|++++.+.+.+..
T Consensus 112 ~~~i~~ik~~~p~l~~~~~------------s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p 179 (350)
T PRK05927 112 EELVRITVKEFPSLHPHFF------------SAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISP 179 (350)
T ss_pred HHHHHHHHHHCCCCcccCC------------CHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCC
Confidence 9999999988753210000 001121 11334667899999999999988876 899999999998887
Q ss_pred CC-CHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec----CCChhHHHHHcC
Q 008466 278 GH-TVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVI----RGTGLYELWKTG 352 (564)
Q Consensus 278 gh-t~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~----~GT~L~~~~~~G 352 (564)
+. +.++-++.++.+++.|+++++.+|+|+ |||+++..+.+..+.++ +-+.--|.++.+. +||||...
T Consensus 180 ~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~-gEt~e~ri~~l~~Lr~l---qd~~~gf~~fIp~~~~~~~tpl~~~---- 251 (350)
T PRK05927 180 KKMGPDGWIQFHKLAHRLGFRSTATMMFGH-VESPEDILLHLQTLRDA---QDENPGFYSFIPWSYKPGNTALGRR---- 251 (350)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcCceeEEee-CCCHHHHHHHHHHHHHh---hHhhCCeeeeeecCcCCCCCccccC----
Confidence 44 579999999999999999999999999 99999999999888754 3222223333333 47998541
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC
Q 008466 353 RYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
...+++.++.+..++.+.-.+|.
T Consensus 252 ~~~~~s~~e~Lr~iAv~Rl~lp~ 274 (350)
T PRK05927 252 VPHQASPELYYRILAVARIFLDN 274 (350)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC
Confidence 11258999999999988888874
|
|
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-11 Score=125.64 Aligned_cols=202 Identities=17% Similarity=0.281 Sum_probs=146.1
Q ss_pred eEEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCC----CCc
Q 008466 106 VVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHS----VDK 181 (564)
Q Consensus 106 vvavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~----~~k 181 (564)
+++=|.+.++||. +-.+.|+||. ...+ |. -.+++-.+++.++..|.+.|.. .+.
T Consensus 183 vi~EiETyRGC~r--~~~ggCSFCt----------Ep~~-g~---------~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ 240 (560)
T COG1031 183 VICEIETYRGCPR--RVSGGCSFCT----------EPVR-GR---------PEFRPPEDVVEEVKALYRAGVRHFRLGRQ 240 (560)
T ss_pred EEEEEeeccCCcc--cccCCCcccc----------CcCc-CC---------cccCCHHHHHHHHHHHHHhccceeeeccc
Confidence 6677777788996 2234699992 1122 32 2456667778878888887632 122
Q ss_pred EEEE-EE----cCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCC------CHHHH
Q 008466 182 VEFI-LM----GGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYC------LGPHL 249 (564)
Q Consensus 182 ve~I-~~----GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i------~~e~L 249 (564)
...+ |+ ||+..--+++.+++|.+.+.+..+.. .-+.+- +||.++ +.+.+
T Consensus 241 ~difsy~~~~~g~e~P~PnPealekL~~Gir~~AP~l-------------------~tLHiDNaNP~tIa~yp~eSr~i~ 301 (560)
T COG1031 241 ADIFSYGADDNGGEVPRPNPEALEKLFRGIRNVAPNL-------------------KTLHIDNANPATIARYPEESREIA 301 (560)
T ss_pred cceeeecccccCCCCCCCCHHHHHHHHHHHHhhCCCC-------------------eeeeecCCCchhhhcChHHHHHHH
Confidence 2333 33 34444456899999999999876532 223333 355544 67888
Q ss_pred HHHHHcCC--CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcC-------Cc---EEEEEecCCCCCCHHHHHHH
Q 008466 250 RQMLSYGC--TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAG-------FK---VVAHMMPDLPNVGVERDLES 317 (564)
Q Consensus 250 ~~L~~~G~--~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G-------~~---v~~~lI~GLPget~e~~~~t 317 (564)
+.+.++|. |-..+|+||+|+++.+..|-..|.|++.+|++.+.+.| +. -...|++||||||.|.+.-+
T Consensus 302 K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln 381 (560)
T COG1031 302 KVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELN 381 (560)
T ss_pred HHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHHHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhh
Confidence 89999985 99999999999999999999999999999999999875 33 34699999999999987665
Q ss_pred HHHHhcC--CCCCCCeEEEeeeeecCCChhHHH
Q 008466 318 FREFFES--PLFRADGLKIYPTLVIRGTGLYEL 348 (564)
Q Consensus 318 ~~~~~~~--~~l~pd~i~iy~l~v~~GT~L~~~ 348 (564)
.+++.+. ..+-+..|.|-...++|||+++..
T Consensus 382 ~efL~~ild~gllvRRINIRqV~~fpgT~~~~~ 414 (560)
T COG1031 382 YEFLKEILDEGLLVRRINIRQVVVFPGTPMWER 414 (560)
T ss_pred HHHHHHHHhcCceEEEeeeeeEeecCCCchhhh
Confidence 5554432 356788899999999999999753
|
|
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.1e-11 Score=124.09 Aligned_cols=156 Identities=16% Similarity=0.165 Sum_probs=113.6
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
++.| |.||.|+..+ .+.++++.+.+.. ....+++.|+.-.++ +.++.|+++|+++|
T Consensus 62 v~~I~~tGGEPllr~--dl~~li~~i~~~~--------------------~l~~i~itTNG~ll~-~~~~~L~~aGl~~v 118 (329)
T PRK13361 62 VRKIRLTGGEPLVRR--GCDQLVARLGKLP--------------------GLEELSLTTNGSRLA-RFAAELADAGLKRL 118 (329)
T ss_pred CCEEEEECcCCCccc--cHHHHHHHHHhCC--------------------CCceEEEEeChhHHH-HHHHHHHHcCCCeE
Confidence 5556 7899997653 3556776665421 112578889876554 68999999999999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCC-cEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGF-KVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~-~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
.|+++|.++++.+.+.|+.+.+++.++++.++++|+ .+.+..++ +||++.+++.+.++++. +++++ +.+..++|
T Consensus 119 ~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~-~~g~N~~ei~~~~~~~~---~~gi~-~~~ie~mP 193 (329)
T PRK13361 119 NISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVI-LRGQNDDEVLDLVEFCR---ERGLD-IAFIEEMP 193 (329)
T ss_pred EEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEE-ECCCCHHHHHHHHHHHH---hcCCe-EEEEeccc
Confidence 999999999999999999999999999999999999 56655443 57888888888888886 45564 45666666
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHHHHH
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVARIL 370 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~ 370 (564)
..+.. + |..+. .++.++..+.+....
T Consensus 194 ~g~~~--~-~~~~~--~~~~~e~~~~l~~~~ 219 (329)
T PRK13361 194 LGEID--E-RRRAR--HCSSDEVRAIIETRY 219 (329)
T ss_pred CCCcc--c-hhhcc--CcCHHHHHHHHHHhC
Confidence 64322 1 22222 367788777765543
|
|
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-10 Score=110.27 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC--CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 163 VQARSRIDQLKRLGHSVDKVEFI-LMGGTFM--SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 163 ~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt--~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
...+.+..++.+.| .+.+ +.||.-+ ..|-+.....++.+++. .++++.+
T Consensus 42 ~~l~k~~~el~kkG-----y~g~llSGGm~srg~VPl~kf~d~lK~lke~-----------------------~~l~ina 93 (275)
T COG1856 42 KSLLKRCMELEKKG-----YEGCLLSGGMDSRGKVPLWKFKDELKALKER-----------------------TGLLINA 93 (275)
T ss_pred HHHHHHHHHHHhcC-----ceeEEEeCCcCCCCCccHHHHHHHHHHHHHh-----------------------hCeEEEE
Confidence 34455566778777 4555 5677544 45666666666666653 3588888
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFR 319 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~ 319 (564)
+...++++.++.+++.+++-+++-+=+-|+-+-+-.+-..|++|+.+.+..++++|+++..|+++||-+-..+-..+.++
T Consensus 94 HvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaId 173 (275)
T COG1856 94 HVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAID 173 (275)
T ss_pred EeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHH
Confidence 88889999999999999999999998776666666666789999999999999999999999999999888776677776
Q ss_pred HHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEE
Q 008466 320 EFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRV 379 (564)
Q Consensus 320 ~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri 379 (564)
-+. ...||.+-+-.++|.|||.+. ..+|++.+|.+..+..+...+|..+.+
T Consensus 174 iL~---~~~~DalVl~vliPtpGtkm~------~~~pp~~eE~i~v~~~AR~~f~~pv~i 224 (275)
T COG1856 174 ILV---NYEPDALVLVVLIPTPGTKMG------NSPPPPVEEAIKVVKYARKKFPNPVSI 224 (275)
T ss_pred HHh---cCCCCeEEEEEEecCCchhcc------CCCCcCHHHHHHHHHHHHHhCCCCeeE
Confidence 665 578999999999999999875 467899999999999999999875554
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.7e-11 Score=135.62 Aligned_cols=208 Identities=12% Similarity=0.088 Sum_probs=150.5
Q ss_pred CCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEE-cCCCCCC-----
Q 008466 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILM-GGTFMSL----- 194 (564)
Q Consensus 121 fC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~-GGTpt~l----- 194 (564)
.|..+|.|| .|...+.. . ...+-...+++....+..+.|. -+.+|. |-.|..-
T Consensus 80 ~C~~~C~YC------aF~~~~~~----~-------~~~~ls~eEIl~~a~~~~~~G~----~e~l~t~G~~P~~~~~~~~ 138 (843)
T PRK09234 80 LCRDRCHYC------TFATVPGK----L-------EAAYLSPDEVLDIARAGAAAGC----KEALFTLGDRPEDRWPEAR 138 (843)
T ss_pred CCCCCCCcC------CCccCCCC----C-------ccccCCHHHHHHHHHHHHHCCC----CEEEEecCCCCcccccccc
Confidence 377999999 67421111 0 1233455677777777777774 245564 4455431
Q ss_pred ----------CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEcc
Q 008466 195 ----------PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGV 264 (564)
Q Consensus 195 ----------~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGv 264 (564)
..+|+.++++.+++..+ +-..+++..++.+.+..|+++|++ ..+.+
T Consensus 139 ~~l~~~gy~~~~ey~~~~~~~ik~~~g-----------------------l~p~i~~G~ls~~E~~~Lk~~g~s-~gl~l 194 (843)
T PRK09234 139 EWLDERGYDSTLDYVRAMAIRVLEETG-----------------------LLPHLNPGVMSWSELARLKPVAPS-MGMML 194 (843)
T ss_pred ccccccccccHHHHHHHHHHHHHHhcC-----------------------CCceeeeCCCCHHHHHHHHHhcCc-CCCCH
Confidence 13666666666654332 333556677999999999999996 56778
Q ss_pred CCCCHHHHHhcC------CCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcC-CCC-CCCeEEEee
Q 008466 265 QSTYEDVARDTN------RGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFES-PLF-RADGLKIYP 336 (564)
Q Consensus 265 QS~~d~vL~~i~------Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~-~~l-~pd~i~iy~ 336 (564)
+|.+++.....+ .+.+.++-+++++.+++.|+++++.+|+|+ |||+++..+.+..+.++ .++ ++..+-+.+
T Consensus 195 Et~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~Gi-GEt~edRve~L~~LR~Lq~~~g~~~evi~~~ 273 (843)
T PRK09234 195 ETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGI-GETLAERAESLFAIRKLHREYGHIQEVIVQN 273 (843)
T ss_pred HHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEEC-CCCHHHHHHHHHHHHHhhHhhCCCcEEeecc
Confidence 887777754433 334577889999999999999999999999 99999999998888643 111 577788999
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEe
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVY 380 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~ 380 (564)
+.+.+||+|.. .++++.++.+..++.+.-.+|+.+.|+
T Consensus 274 F~p~~gT~l~~------~~~~s~~e~Lr~iAvaRliL~~~~~Iq 311 (843)
T PRK09234 274 FRAKPDTAMAG------VPDAGLEELLATIAVARLVLGPKMRIQ 311 (843)
T ss_pred cccCCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCCceee
Confidence 99999999853 467999999999999999998876553
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-10 Score=129.93 Aligned_cols=186 Identities=12% Similarity=0.066 Sum_probs=135.8
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE- 238 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE- 238 (564)
-+..+++.+..+..+.|. -+..+.||.-..++.++..++++.|++.++. +.|-..
T Consensus 557 Ls~eeI~~~a~ea~~~G~----tev~i~gG~~p~~~~~~y~~lir~IK~~~p~--------------------i~i~afs 612 (843)
T PRK09234 557 LSLDEVADRAWEAWVAGA----TEVCMQGGIHPELPGTGYADLVRAVKARVPS--------------------MHVHAFS 612 (843)
T ss_pred CCHHHHHHHHHHHHHCCC----CEEEEecCCCCCcCHHHHHHHHHHHHHhCCC--------------------eeEEecC
Confidence 355666666666777773 1223446654468888888999999987752 111111
Q ss_pred --------eeCCCCCHHHHHHHHHcCCCeEEE-ccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 008466 239 --------TRPDYCLGPHLRQMLSYGCTRLEI-GVQSTYEDVARDTNR-GHTVAAVADCFCLAKDAGFKVVAHMMPDLPN 308 (564)
Q Consensus 239 --------trPd~i~~e~L~~L~~~G~~rvsi-GvQS~~d~vL~~i~R-ght~~~~~~ai~~lr~~G~~v~~~lI~GLPg 308 (564)
..-...++|.|..|+++|++++-- +-+-+++++.+.+.. ..+.++.+++++.+++.|+++++.+|+|+ +
T Consensus 613 p~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stmm~G~-~ 691 (843)
T PRK09234 613 PMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGH-V 691 (843)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccceEEcC-C
Confidence 112334689999999999999966 556677777777775 46888999999999999999999999998 7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCeEEEeeeee----cCCChhHHHHHcC-CCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 309 VGVERDLESFREFFESPLFRADGLKIYPTLV----IRGTGLYELWKTG-RYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 309 et~e~~~~t~~~~~~~~~l~pd~i~iy~l~v----~~GT~L~~~~~~G-~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
||++++.+.+..+. +++.+..-|.++.| .++||++. .| ..+.++.++.+.+++.+.-+||+.
T Consensus 692 Et~edrv~hl~~Lr---eLq~~tgGf~~fIPl~F~~~~tpl~l---~~~~~~~~t~~e~Lr~iAvaRl~Lp~~ 758 (843)
T PRK09234 692 DTPRHWVAHLRVLR---DIQDRTGGFTEFVPLPFVHQNAPLYL---AGAARPGPTHRENRAVHALARIMLHGR 758 (843)
T ss_pred CCHHHHHHHHHHHH---hcCcccCCeeeeeeccccCCCCCccc---ccCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999998887 46665544445554 56888852 22 245689999999999998888864
|
|
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.5e-10 Score=115.54 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=108.8
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
++.| |.||.|+..+ .+.++++.+.+.. ....+++.|+...+ .+.++.|+++|+++|
T Consensus 66 i~~I~~tGGEPll~~--~l~~li~~i~~~~--------------------~~~~i~itTNG~ll-~~~~~~L~~agl~~i 122 (331)
T PRK00164 66 VRKVRLTGGEPLLRK--DLEDIIAALAALP--------------------GIRDLALTTNGYLL-ARRAAALKDAGLDRV 122 (331)
T ss_pred CCEEEEECCCCcCcc--CHHHHHHHHHhcC--------------------CCceEEEEcCchhH-HHHHHHHHHcCCCEE
Confidence 4455 7899998763 3566777665421 12468888887543 568999999999999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCC-cEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGF-KVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~-~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
.|+++|++++..+.++++.+.+++.++++.++++|+ .+.+.+. -+||.+.+++.+.++.+. .+++ .+.+..+++
T Consensus 123 ~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~v-v~~g~n~~ei~~l~~~~~---~~gv-~v~~ie~~p 197 (331)
T PRK00164 123 NVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAV-LMKGVNDDEIPDLLEWAK---DRGI-QLRFIELMP 197 (331)
T ss_pred EEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEE-EECCCCHHHHHHHHHHHH---hCCC-eEEEEEeeE
Confidence 999999999999999999999999999999999999 6665543 367777777777776665 3444 466777777
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
..+..- |.... ..+.++..+.+.
T Consensus 198 ~~~~~~---~~~~~--~~~~~~~~~~l~ 220 (331)
T PRK00164 198 TGEGNE---WFRKH--HLSGAEIRARLA 220 (331)
T ss_pred CCCCcc---hhhhc--CCCHHHHHHHHH
Confidence 665421 21111 245666655544
|
|
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-09 Score=114.52 Aligned_cols=154 Identities=14% Similarity=0.142 Sum_probs=109.5
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
++.| +.||.|+..+ .+.++++.+.+.. ....+++.|+.- +..+.++.|+++|+++|
T Consensus 60 v~~V~ltGGEPll~~--~l~~li~~i~~~~--------------------gi~~v~itTNG~-ll~~~~~~L~~~gl~~v 116 (334)
T TIGR02666 60 VRKVRLTGGEPLLRK--DLVELVARLAALP--------------------GIEDIALTTNGL-LLARHAKDLKEAGLKRV 116 (334)
T ss_pred CCEEEEECccccccC--CHHHHHHHHHhcC--------------------CCCeEEEEeCch-hHHHHHHHHHHcCCCeE
Confidence 4445 7899998764 3556666654311 112688888875 44678999999999999
Q ss_pred EEccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 261 EIGVQSTYEDVARDTNR-GHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 261 siGvQS~~d~vL~~i~R-ght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
.|+++|.+++..+.+.| +++.+++.++++.++++|+. +.+.++ -++|.+.+++.+.++.+. ++++ .+.+..++
T Consensus 117 ~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~v-v~~g~n~~ei~~l~~~~~---~~gv-~~~~ie~m 191 (334)
T TIGR02666 117 NVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTV-VMRGVNDDEIVDLAEFAK---ERGV-TLRFIELM 191 (334)
T ss_pred EEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEE-EeCCCCHHHHHHHHHHHH---hcCC-eEEEEecc
Confidence 99999999999999985 67999999999999999997 666543 346778887777777765 3444 36666777
Q ss_pred ecCCChhHHHHHcCCCCCCCHHHHHHHHHH
Q 008466 339 VIRGTGLYELWKTGRYRNYPPEQLVDIVAR 368 (564)
Q Consensus 339 v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~ 368 (564)
+..++.. |.... ..+.++..+.+..
T Consensus 192 p~~~~~~---~~~~~--~~~~~ei~~~l~~ 216 (334)
T TIGR02666 192 PLGEGNG---WREKK--FVSADEILERLEQ 216 (334)
T ss_pred CCCCCcc---chhhc--ccCHHHHHHHHHh
Confidence 7766632 21211 2456666665544
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >PTZ00413 lipoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-09 Score=112.12 Aligned_cols=100 Identities=9% Similarity=0.065 Sum_probs=89.4
Q ss_pred EEEEEee-CCCC-CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHc---CCcEEEEEecCCC
Q 008466 234 GMTIETR-PDYC-LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNR-GHTVAAVADCFCLAKDA---GFKVVAHMMPDLP 307 (564)
Q Consensus 234 eitiEtr-Pd~i-~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~R-ght~~~~~~ai~~lr~~---G~~v~~~lI~GLP 307 (564)
++.+|+- ||.. +.+.++.|+++|++++..++|| .++.+..++. +|+.++.++.++.+++. |+.+.+++|+||
T Consensus 228 ~~~IevligDf~g~~e~l~~L~eAG~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGL- 305 (398)
T PTZ00413 228 ELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGL- 305 (398)
T ss_pred CCeEEEcCCccccCHHHHHHHHhcCCCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecC-
Confidence 5788875 6632 8999999999999999999999 7999999995 79999999999999987 899999999995
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
|||.+++++++..+. ++++|.+.|-+++
T Consensus 306 GET~eEvie~m~dLr---elGVDivtIGQYL 333 (398)
T PTZ00413 306 GETEEEVRQTLRDLR---TAGVSAVTLGQYL 333 (398)
T ss_pred CCCHHHHHHHHHHHH---HcCCcEEeecccc
Confidence 999999999999997 6889999996654
|
|
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-09 Score=113.68 Aligned_cols=168 Identities=13% Similarity=0.060 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
++.++......+...| ++.| |.||.|+..+ .+.++++.+.+. . ....+++.|
T Consensus 91 s~eei~~~i~~~~~~G-----v~~I~~tGGEPllr~--dl~eli~~l~~~-~-------------------gi~~i~itT 143 (373)
T PLN02951 91 SQDEIVRLAGLFVAAG-----VDKIRLTGGEPTLRK--DIEDICLQLSSL-K-------------------GLKTLAMTT 143 (373)
T ss_pred CHHHHHHHHHHHHHCC-----CCEEEEECCCCcchh--hHHHHHHHHHhc-C-------------------CCceEEEee
Confidence 3444444334455555 4445 7899997654 256677666542 1 112477777
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESF 318 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~ 318 (564)
+--.+ .+.+..|+++|+++|.|.++|.+++..+.+.|+...++++++++.++++|+. +.+.+ +-++|.+.+++.+.+
T Consensus 144 NG~lL-~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~-vv~~g~N~~Ei~~li 221 (373)
T PLN02951 144 NGITL-SRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNC-VVMRGFNDDEICDFV 221 (373)
T ss_pred CcchH-HHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEE-EecCCCCHHHHHHHH
Confidence 77544 4678999999999999999999999999999988899999999999999985 44433 345577777777777
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
+.+.+ .+ -.+.+..++|..|++.. ... .++.++..+.+.
T Consensus 222 ~~a~~---~g-i~vr~ie~mP~~~~~~~----~~~--~~~~~ei~~~l~ 260 (373)
T PLN02951 222 ELTRD---KP-INVRFIEFMPFDGNVWN----VKK--LVPYAEMMDRIE 260 (373)
T ss_pred HHHHh---CC-CeEEEEEcccCCCCccc----ccc--CCCHHHHHHHHH
Confidence 66653 33 46788888888888532 222 245666665554
|
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.3e-09 Score=108.46 Aligned_cols=131 Identities=16% Similarity=0.130 Sum_probs=98.7
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
++.| |.||.|+..+. +.++++.+.+. . ...+++.|+.- +..+.+..|+++|+++|
T Consensus 57 i~~I~~tGGEPll~~~--l~~iv~~l~~~-g--------------------~~~v~i~TNG~-ll~~~~~~l~~~g~~~v 112 (302)
T TIGR02668 57 VRKVKITGGEPLLRKD--LIEIIRRIKDY-G--------------------IKDVSMTTNGI-LLEKLAKKLKEAGLDRV 112 (302)
T ss_pred CCEEEEECcccccccC--HHHHHHHHHhC-C--------------------CceEEEEcCch-HHHHHHHHHHHCCCCEE
Confidence 4445 78999987543 44566665532 1 12578888875 44688999999999999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
.|++.|.++++.+.++++.+.+++.++++.++++|+. +.+.+++ +||.+.+++.+.++.+.+ ++.+ +.+..+++
T Consensus 113 ~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~-~~g~n~~ei~~~~~~~~~---~g~~-~~~ie~~p 187 (302)
T TIGR02668 113 NVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVV-LKGINDNEIPDMVEFAAE---GGAI-LQLIELMP 187 (302)
T ss_pred EEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEE-eCCCCHHHHHHHHHHHHh---cCCE-EEEEEEeE
Confidence 9999999999999999999999999999999999986 6555433 688898888887777753 4443 56555555
Q ss_pred cC
Q 008466 340 IR 341 (564)
Q Consensus 340 ~~ 341 (564)
..
T Consensus 188 ~~ 189 (302)
T TIGR02668 188 PG 189 (302)
T ss_pred CC
Confidence 43
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-09 Score=111.71 Aligned_cols=129 Identities=11% Similarity=0.089 Sum_probs=101.9
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..| |.||.|+..+. +.++++.+++. .+.+++.|+...++++.++.|+++|++.|
T Consensus 63 ~~~v~~~GGEPll~~~--~~~il~~~~~~----------------------g~~~~i~TNG~ll~~~~~~~L~~~g~~~v 118 (378)
T PRK05301 63 ALQLHFSGGEPLLRKD--LEELVAHAREL----------------------GLYTNLITSGVGLTEARLAALKDAGLDHI 118 (378)
T ss_pred CcEEEEECCccCCchh--HHHHHHHHHHc----------------------CCcEEEECCCccCCHHHHHHHHHcCCCEE
Confidence 3444 78999987543 55666666531 13467889998899999999999999999
Q ss_pred EEccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 261 EIGVQSTYEDVARDTNRG-HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
+|++++.++++.+.+.++ .+.+.++++++.+++.|+++.+.+. ++.++.+++.+.++.+. +++++.+.+.++.+
T Consensus 119 ~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~v--v~~~N~~~i~~~~~~~~---~lgv~~i~~~~~~~ 193 (378)
T PRK05301 119 QLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAV--IHRHNIDQIPRIIELAV---ELGADRLELANTQY 193 (378)
T ss_pred EEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEE--eecCCHHHHHHHHHHHH---HcCCCEEEEecccc
Confidence 999999999999988665 4899999999999999999776544 46788888888887775 57889988776543
|
|
| >PRK10314 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-10 Score=106.72 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=67.0
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
+.|++.+++ +.+||++|+....+... . -++. -+.|+++ |||+|+|++||+++++++++.
T Consensus 48 ~~h~~~~~~---~~~vg~~r~~~~~~~~~-------~---~~i~----rv~V~~~----~rG~GiG~~Lm~~~~~~~~~~ 106 (153)
T PRK10314 48 NRHILGWKN---DELVAYARILKSDDDLE-------P---VVIG----RVIVSEA----LRGEKVGQQLMSKTLESCTRH 106 (153)
T ss_pred cEEEEEEEC---CEEEEEEEEecCCCCCC-------C---EEEE----EEEECHH----HhCCCHHHHHHHHHHHHHHHH
Confidence 678888876 78999999985321100 0 1122 1337776 999999999999999999874
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.+...|.+.++..|.+||+|+||+..|.
T Consensus 107 ~~~~~i~L~a~~~a~~fY~k~GF~~~g~ 134 (153)
T PRK10314 107 WPDKPVYLGAQAHLQNFYQSFGFIPVTE 134 (153)
T ss_pred CCCCcEEEehHHHHHHHHHHCCCEECCC
Confidence 4778899999988999999999999884
|
|
| >KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-09 Score=109.10 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=104.9
Q ss_pred ccEEEEEEe-eCCCCCHHHHHHHHHcC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecC
Q 008466 231 KCIGMTIET-RPDYCLGPHLRQMLSYG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPD 305 (564)
Q Consensus 231 ~~~eitiEt-rPd~i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~G 305 (564)
+.+.|.+.. +|.+..+|.|+++++.- |.-+.+-+||.|.++|+.|.||++.+.+.+-+..++.. |....+|||.|
T Consensus 324 PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysreayl~lv~~Irs~iPgVglssdfitg 403 (552)
T KOG2492|consen 324 PEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYLELVAHIRSMIPGVGLSSDFITG 403 (552)
T ss_pred cceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCChHhhhhHHHHHHhhCCCCcceeeeEec
Confidence 456777775 99999999999999976 79999999999999999999999999999999999996 55567899999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 306 LPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 306 LPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
+-|+|.++..+|+..+. +.+-|.+..++.....+|..|..+...
T Consensus 404 fCgeTeedhq~t~sLlr---qVgYdv~~lFaysmR~kT~ay~r~~dd 447 (552)
T KOG2492|consen 404 FCGETEEDHQYTVSLLR---QVGYDVVFLFAYSMREKTRAYHRLKDD 447 (552)
T ss_pred ccCCChHHHHHHHHHHH---HhccCeeeeEEeeecccchhhhhhccc
Confidence 99999999999987765 567788899999999999999877654
|
|
| >PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=99.97 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=69.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
..+|+..++ +.+||++.+....+. +.. . -.-++| +| |+++ |||+|||+.||++++++|++
T Consensus 47 ~~~~v~~~~---~~ivG~~~~~~~~~~-~~~-----~-~~~~i~~l~-----v~p~----~rg~GiG~~Ll~~~~~~a~~ 107 (144)
T PRK10146 47 MRYHLALLD---GEVVGMIGLHLQFHL-HHV-----N-WIGEIQELV-----VMPQ----ARGLNVGSKLLAWAEEEARQ 107 (144)
T ss_pred ceEEEEEEC---CEEEEEEEEEecccc-ccc-----c-hhheeheeE-----ECHH----HcCCCHHHHHHHHHHHHHHH
Confidence 355666554 789999999864211 000 0 001232 44 6766 99999999999999999999
Q ss_pred cCCCcEEEEec---CCCcHHHHhhCCCeeeCceEeeec
Q 008466 529 EHRSRKMAVIS---GVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 529 ~~g~~~i~~~s---~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
.|+..+.+.+ +..|.+||+|+||+..+.-|.|.|
T Consensus 108 -~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~~~~~~~ 144 (144)
T PRK10146 108 -AGAEMTELSTNVKRHDAHRFYLREGYEQSHFRFTKAL 144 (144)
T ss_pred -cCCcEEEEecCCCchHHHHHHHHcCCchhhhhheeCC
Confidence 5999998764 558999999999999988777764
|
|
| >KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.3e-09 Score=107.72 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=90.8
Q ss_pred EEEE-eeCCCCCHHHHHHHHH---cC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCC
Q 008466 235 MTIE-TRPDYCLGPHLRQMLS---YG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDL 306 (564)
Q Consensus 235 itiE-trPd~i~~e~L~~L~~---~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GL 306 (564)
+.+. |+|-++ -|+++.++. .- ..-+.+-|||++|.+|-.|+|-+...++...+..+++. |+.+..|+|.|+
T Consensus 271 lr~gmTnpP~i-lehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgF 349 (547)
T KOG4355|consen 271 LRAGMTNPPYI-LEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGF 349 (547)
T ss_pred hhhcCCCCchH-HHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecC
Confidence 4444 566644 334444433 22 26778899999999999999999999999999999985 788889999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHH
Q 008466 307 PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYEL 348 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~ 348 (564)
|+||.+++.++++.+. .++.+.+.|..+.|.||||-+++
T Consensus 350 PtETdeDFeeTmeLv~---kYKFPslfInQfyPRpGTPAAkm 388 (547)
T KOG4355|consen 350 PTETDEDFEETMELVR---KYKFPSLFINQFYPRPGTPAAKM 388 (547)
T ss_pred CCCchHHHHHHHHHHH---HccCchhhhhhcCCCCCChHHhh
Confidence 9999999999998775 67889999999999999998876
|
|
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-08 Score=106.12 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=99.5
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..| |.||.|+..+ + +.++++.+++. ...+++.|+--.++++.++.|+++|+++|
T Consensus 54 ~~~v~~~GGEPll~~-~-~~~ii~~~~~~----------------------g~~~~l~TNG~ll~~e~~~~L~~~g~~~v 109 (358)
T TIGR02109 54 VLQLHFSGGEPLARP-D-LVELVAHARRL----------------------GLYTNLITSGVGLTEARLDALADAGLDHV 109 (358)
T ss_pred CcEEEEeCccccccc-c-HHHHHHHHHHc----------------------CCeEEEEeCCccCCHHHHHHHHhCCCCEE
Confidence 3445 7899998654 3 45666665431 13467888888899999999999999999
Q ss_pred EEccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 261 EIGVQSTYEDVARDTNRG-HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
.|++++.++++.+.+.+. .+.+.+.++++.++++|+++.+.+. ++.++.+++.+.++.+. +++++.+.+.++.
T Consensus 110 ~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~v--v~~~N~~~l~~~~~~~~---~lg~~~i~~~~~~ 183 (358)
T TIGR02109 110 QLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFV--IHRHNIDQIPEIIELAI---ELGADRVELATTQ 183 (358)
T ss_pred EEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEE--eccCCHHHHHHHHHHHH---HcCCCEEEEEeee
Confidence 999999999999988653 3679999999999999998765443 46778888877777775 5788988886644
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >PTZ00330 acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-09 Score=97.27 Aligned_cols=88 Identities=23% Similarity=0.207 Sum_probs=68.1
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~ 540 (564)
++.+||++.+...... .+. +....+++ .+.|+++ |||+|||++||+.++++|++ .|+.++.+.++
T Consensus 60 ~~~~vG~~~~~~~~~~-~~~-----~~~~~~i~----~~~V~~~----~rg~Gig~~l~~~~~~~a~~-~~~~~l~l~~n 124 (147)
T PTZ00330 60 TQRIVGTASLFVEPKF-TRG-----GKCVGHIE----DVVVDPS----YRGQGLGRALISDLCEIARS-SGCYKVILDCT 124 (147)
T ss_pred CCEEEEEEEEEecccc-ccC-----CCceEEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-CCCCEEEEecC
Confidence 4789999998744211 111 11122333 1237776 99999999999999999999 59999999999
Q ss_pred CCcHHHHhhCCCeeeCceEeeec
Q 008466 541 VGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 541 ~~a~~fY~klGy~~~g~~m~K~l 563 (564)
..|++||+|+||+.....|.+.|
T Consensus 125 ~~a~~~y~k~GF~~~~~~~~~~~ 147 (147)
T PTZ00330 125 EDMVAFYKKLGFRACERQMRLDL 147 (147)
T ss_pred hHHHHHHHHCCCEEeceEEEEeC
Confidence 99999999999999999999876
|
|
| >TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.6e-08 Score=96.48 Aligned_cols=151 Identities=9% Similarity=0.052 Sum_probs=98.6
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC-CHHHHHHHHHcCCCeEEEcc
Q 008466 186 LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC-LGPHLRQMLSYGCTRLEIGV 264 (564)
Q Consensus 186 ~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i-~~e~L~~L~~~G~~rvsiGv 264 (564)
|.||.|+. .++.+..+++.+++. . +.+++.|+-... ..+.+..+.+ .++.|.+++
T Consensus 71 ~~GGEPll-~~~~~~~li~~~~~~-g---------------------~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl 126 (235)
T TIGR02493 71 FSGGEPLL-QPEFLSELFKACKEL-G---------------------IHTCLDTSGFLGGCTEAADELLE-YTDLVLLDI 126 (235)
T ss_pred EeCccccc-CHHHHHHHHHHHHHC-C---------------------CCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeC
Confidence 78999975 456666777766541 1 246777877322 1456666665 467899999
Q ss_pred CCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC--CCHHHHHHHHHHHhcCCCCC-CCeEEEeeeeecC
Q 008466 265 QSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN--VGVERDLESFREFFESPLFR-ADGLKIYPTLVIR 341 (564)
Q Consensus 265 QS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPg--et~e~~~~t~~~~~~~~~l~-pd~i~iy~l~v~~ 341 (564)
+|.+++..+.+.+. +.+.+.++++.+++.|+.+.+-+++ .|+ ++.+++.+.++.+. .++ +..+.+-|+.+.
T Consensus 127 ~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~~~v~~vv-~~~~~~n~~ei~~l~~~~~---~l~~~~~~~~~p~~~~- 200 (235)
T TIGR02493 127 KHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKPIWIRYVL-VPGYTDSEEDIEALAEFVK---TLPNVERVEVLPYHQL- 200 (235)
T ss_pred CCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCcEEEEEee-eCCcCCCHHHHHHHHHHHH---hCCCCceEEecCCCcc-
Confidence 99999999887654 8899999999999999987654443 354 46677777776665 344 355655555543
Q ss_pred CChhHHHHHcC----CCCCCCHHHHHHHH
Q 008466 342 GTGLYELWKTG----RYRNYPPEQLVDIV 366 (564)
Q Consensus 342 GT~L~~~~~~G----~~~~~~~ee~~~~~ 366 (564)
|+..++..... .+++++.++..+..
T Consensus 201 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (235)
T TIGR02493 201 GVYKWEALGIEYPLEGVKPPNKEQLERAA 229 (235)
T ss_pred cHHHHHHcCCcCccCCCCCCCHHHHHHHH
Confidence 55544432222 24556666554443
|
An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. |
| >TIGR00238 KamA family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.8e-08 Score=102.74 Aligned_cols=162 Identities=10% Similarity=0.147 Sum_probs=120.1
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-----eCCCCCHHHHHHHHHcCC
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-----RPDYCLGPHLRQMLSYGC 257 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-----rPd~i~~e~L~~L~~~G~ 257 (564)
+.+|.||.|..++.+.+.++++.+.+. . ....+.+.+ .|..++++.++.|+++|+
T Consensus 162 eV~lsGGDPLl~~d~~L~~ll~~L~~i-~-------------------~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~ 221 (331)
T TIGR00238 162 EILISGGDPLMAKDHELEWLLKRLEEI-P-------------------HLVRLRIGTRLPVVIPQRITDELCELLASFEL 221 (331)
T ss_pred EEEEECCccccCCHHHHHHHHHHHHhc-C-------------------CccEEEeecCCCccCchhcCHHHHHHHHhcCC
Confidence 455889999999988888888887642 1 223455554 467789999999999999
Q ss_pred CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEe
Q 008466 258 TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
..+.++.-...+++ .+++.+|++.++++|+.+.+ -++-|. +++.+.+.+.++.+. .+++....+|
T Consensus 222 ~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~qtvLl~gv-nD~~~~l~~L~~~l~---~~gV~pyyl~ 288 (331)
T TIGR00238 222 QLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLNQSVLLRGV-NDRAQILAKLSIALF---KVGIIPYYLH 288 (331)
T ss_pred cEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEeecceECCc-CCCHHHHHHHHHHHh---hcCeecCeec
Confidence 88877755544332 27889999999999998664 677777 777777777777776 4566667777
Q ss_pred eeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCC
Q 008466 336 PTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIP 387 (564)
Q Consensus 336 ~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip 387 (564)
.+.+..|+. .| ..+.++..+++..+...+|- .-+.++.+|+|
T Consensus 289 ~~~~~~g~~--------~f-~~~~~~~~~i~~~l~~~~sG-~~~P~~v~~~~ 330 (331)
T TIGR00238 289 YLDKVQGAK--------HF-LVPDAEAAQIVKELARLTSG-YLVPKFAVEIM 330 (331)
T ss_pred CcCCCCCcc--------cc-cCCHHHHHHHHHHHHhcCCC-CcceeEEecCC
Confidence 888888872 23 37899999999999999865 44556666666
|
Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein. |
| >TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.5e-08 Score=105.44 Aligned_cols=179 Identities=15% Similarity=0.173 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 162 YVQARSRIDQLKRLGHSVDKVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 162 y~~~l~r~~~l~~~g~~~~kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
..+++....++..... .+..| |.| |.|+.-+... .+++..+++.++ .+.++++|
T Consensus 62 pee~~~~i~~v~~~~~---~~~~V~iaG~GEPLl~~e~~-~~~l~~~~~~~~--------------------~i~i~lsT 117 (442)
T TIGR01290 62 PEQALRKARQVAAEIP---QLSVVGIAGPGDPLANIGKT-FQTLELVARQLP--------------------DVKLCLST 117 (442)
T ss_pred HHHHHHHHHHHHHhcC---CCCEEEEecCCCcccCcccc-HHHHHHHHHhcC--------------------CCeEEEEC
Confidence 3455555444443211 13334 677 9998765433 334555655432 24689999
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhc-------CC---CCC-----HHHHHHHHHHHHHcCCcEE--EEE
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDT-------NR---GHT-----VAAVADCFCLAKDAGFKVV--AHM 302 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i-------~R---ght-----~~~~~~ai~~lr~~G~~v~--~~l 302 (564)
+-- +.++.++.|.++|++.|.+.+-++++++.+.+ +| |.. .+.++++++.+.+.|+.+. +-+
T Consensus 118 NG~-~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vl 196 (442)
T TIGR01290 118 NGL-MLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVL 196 (442)
T ss_pred CCC-CCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEe
Confidence 884 55899999999999999999999999999876 22 222 3456799999999998754 345
Q ss_pred ecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC--CChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 303 MPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIR--GTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 303 I~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~--GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
|+|+ +.+++.+.++.+. .++++.+.+.|+.+.| |+++. -...++++.+++.++...+...+|.
T Consensus 197 IpGi---ND~~i~~l~~~~~---~lg~~~~nl~p~~~~p~~G~~~~----~~~~~~ps~e~l~~~~~~~~~~~~~ 261 (442)
T TIGR01290 197 IPGI---NDEHLVEVSKQVK---ELGAFLHNVMPLISAPEHGTVYG----LNGQREPDPDELAALRDRLEMGTPQ 261 (442)
T ss_pred eCCc---CHHHHHHHHHHHH---hCCCcEEEeecCCCccccCCccC----cCCCCCcCHHHHHHHHHHHHhhhhh
Confidence 6555 5566666666554 4667778888888877 87642 2235678888877766655555553
|
This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. |
| >PHA00673 acetyltransferase domain containing protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=99.42 Aligned_cols=95 Identities=15% Similarity=0.075 Sum_probs=71.3
Q ss_pred eeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHH
Q 008466 445 VANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAER 524 (564)
Q Consensus 445 ~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~ 524 (564)
.+.++..+|+++.+ +.+|||+.+.+.... ++... ..+.+..++ |++. +||+|||++||++|++
T Consensus 50 ~~dp~~~llVa~~~---g~vVG~~~l~~~p~l-~~~~~--~~~~Ie~l~-------V~~~----~RGqGIG~~Ll~~A~~ 112 (154)
T PHA00673 50 EAAGVAHFLGVFRG---EELVGFACLLVTPVP-HFKGQ--LIGTTESIF-------VAAA----HRPGGAGMALLRATEA 112 (154)
T ss_pred HhCCCcEEEEEEEC---CEEEEEEEEEEecCC-ccCCc--cEEEEEEEE-------EChh----ccCCCHHHHHHHHHHH
Confidence 34567888888875 789999999877522 22111 122333332 5666 9999999999999999
Q ss_pred HHHhcCCCcEEEEec--CCCcHHHHhhCCCeeeCc
Q 008466 525 IALGEHRSRKMAVIS--GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 525 ~A~~~~g~~~i~~~s--~~~a~~fY~klGy~~~g~ 557 (564)
+|++ +|+..|.|++ ..+...||.++||..+..
T Consensus 113 ~Ar~-~Gc~~lyis~~p~~~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 113 LARD-LGATGLYVSGPTEGRLVQLLPAAGYRETNR 146 (154)
T ss_pred HHHH-CCCCEEEEecCCCccchHHHHhCCchhhch
Confidence 9999 5999999986 557899999999987653
|
|
| >TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-07 Score=101.65 Aligned_cols=162 Identities=16% Similarity=0.223 Sum_probs=123.8
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEee-----CCCCCHHHHHHHHHcCC
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETR-----PDYCLGPHLRQMLSYGC 257 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtr-----Pd~i~~e~L~~L~~~G~ 257 (564)
+.++.||.|..++.+.++++++.|.+ ++ .+.-+.+.|| |..+|++.++.|++++.
T Consensus 158 ~VlLSGGDPLll~d~~L~~iL~~L~~-Ip-------------------hV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~ 217 (417)
T TIGR03820 158 DVLLSGGDPLLLSDDYLDWILTELRA-IP-------------------HVEVIRIGTRVPVVLPQRITDELVAILKKHHP 217 (417)
T ss_pred EEEEeCCccccCChHHHHHHHHHHhh-cC-------------------CCceEEEeeccccccccccCHHHHHHHHhcCC
Confidence 45578999999999999988888875 22 2335888999 99999999999999987
Q ss_pred CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEe
Q 008466 258 TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
.+|.+-+.+. +. ..+++.+|+++++++|+.+. +-++-|. +++.+.+.+.++.+++ .++.=--+|
T Consensus 218 ~~v~~h~nhp--~E--------it~~a~~Al~~L~~aGI~l~nQsVLLkGV-ND~~~~l~~L~~~L~~---~gV~PYYl~ 283 (417)
T TIGR03820 218 VWLNTHFNHP--RE--------ITASSKKALAKLADAGIPLGNQSVLLAGV-NDCPRIMKKLVHKLVA---NRVRPYYLY 283 (417)
T ss_pred eEEEEeCCCh--Hh--------ChHHHHHHHHHHHHcCCEEEeeceEECCc-CCCHHHHHHHHHHHHH---CCCeeceee
Confidence 6665555443 22 25899999999999999865 4788996 8888888888888874 344333567
Q ss_pred eeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCCh
Q 008466 336 PTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPM 388 (564)
Q Consensus 336 ~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~ 388 (564)
.+-+.+|+.-++ .+.++.++++..+...++-.. +.+...|+|.
T Consensus 284 ~~d~v~G~~hFr---------v~~~~g~~I~~~lr~~~sG~~-vP~~v~d~pg 326 (417)
T TIGR03820 284 QCDLSEGLSHFR---------TPVGKGIEIIESLIGHTSGFA-VPTYVVDAPG 326 (417)
T ss_pred eccCCCCccccc---------CcHHHHHHHHHHHHHhCCCCC-ceEEEEecCC
Confidence 778888875432 678999999999999987654 5556667665
|
This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region. |
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-08 Score=105.61 Aligned_cols=219 Identities=12% Similarity=0.099 Sum_probs=151.7
Q ss_pred CCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHH
Q 008466 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRD 200 (564)
Q Consensus 121 fC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~ 200 (564)
+|.++|.|| .|+..+ +. + ....-...++..+...+.+.|. -+..+.||....++.+|.+
T Consensus 68 ~C~~~C~fC------aF~~~~----~~-~------~~y~Ls~eeI~~~~~~~~~~G~----~Evli~gG~~p~~~~~y~~ 126 (370)
T COG1060 68 ICVNDCTFC------AFYRKP----GD-P------KAYTLSPEEILEEVREAVKRGI----TEVLIVGGEHPELSLEYYE 126 (370)
T ss_pred hhcCCCCcc------ccccCC----CC-c------cccccCHHHHHHHHHHHHHcCC----eEEEEecCcCCCcchHHHH
Confidence 488999999 886332 11 1 1234556777777777888774 3555778877788888999
Q ss_pred HHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHH-HHHHHHcCCCeEEEccCCCCHHH-HHhc-CC
Q 008466 201 YFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPH-LRQMLSYGCTRLEIGVQSTYEDV-ARDT-NR 277 (564)
Q Consensus 201 ~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~-L~~L~~~G~~rvsiGvQS~~d~v-L~~i-~R 277 (564)
+.++.+++.++..--.. -...+|..-+++..++-+. ++.|+++|.+.+-.|-....++. .+.+ ..
T Consensus 127 ~~~~~ik~~~p~~~i~a------------~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~ 194 (370)
T COG1060 127 ELFRTIKEEFPDLHIHA------------LSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPP 194 (370)
T ss_pred HHHHHHHHhCcchhhcc------------cCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCC
Confidence 99999998766310000 0112344446666676555 99999999987776666655554 4433 34
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcC-CCC-CCCeEEEeeeeecCCChhHHHHHcCCCC
Q 008466 278 GHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFES-PLF-RADGLKIYPTLVIRGTGLYELWKTGRYR 355 (564)
Q Consensus 278 ght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~-~~l-~pd~i~iy~l~v~~GT~L~~~~~~G~~~ 355 (564)
+.+.+.-+++.+.+.+.|++.++-+|+|- +||.++..+.+..+..+ .+. ++-.+.+-++.+..++ -......
T Consensus 195 K~~~~~wle~~~~Ah~lGI~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~-----~~~~~~~ 268 (370)
T COG1060 195 KKSPEEWLEIHERAHRLGIPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGP-----LPAEVVP 268 (370)
T ss_pred CCCHHHHHHHHHHHHHcCCCccceeEEEe-cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCC-----ccccCCC
Confidence 56889999999999999999999999998 89999998888877654 112 2334444455555555 1123345
Q ss_pred CCCHHHHHHHHHHHHHhCCCceE
Q 008466 356 NYPPEQLVDIVARILAMVPPWTR 378 (564)
Q Consensus 356 ~~~~ee~~~~~~~~~~~lp~~ir 378 (564)
..+..+.+..++-+.-.++.++.
T Consensus 269 ~~~~~~~l~~iAiaRi~l~~~i~ 291 (370)
T COG1060 269 EASLEQDLKAIALARIFLDNNIS 291 (370)
T ss_pred CCCHHHHHHHHHHHHHHccCccc
Confidence 67889999999988888886655
|
|
| >PLN02706 glucosamine 6-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=95.37 Aligned_cols=97 Identities=20% Similarity=0.258 Sum_probs=67.8
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+. ++.+++.+||+..+.+......+ .+ ..-|+. .+.|+++ |||+|||++||+.++++|++ +
T Consensus 54 ~~~~~-~~~~~~~ivG~~~~~~~~~~~~~------~~--~~~~i~--~i~V~~~----~rg~GiG~~ll~~~~~~a~~-~ 117 (150)
T PLN02706 54 LICVI-EDAASGRIIATGSVFVERKFIRN------CG--KVGHIE--DVVVDSA----ARGKGLGKKIIEALTEHARS-A 117 (150)
T ss_pred EEEEE-EeCCCCcEEEEEEEEEEeecccC------CC--cEEEEE--EEEECHH----HcCCCHHHHHHHHHHHHHHH-c
Confidence 33444 33335789999988643211110 00 111221 1347776 99999999999999999998 5
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCceEeeec
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
|+++|.+........||+|+||+.+|.-|.|.+
T Consensus 118 g~~~i~l~~~~~N~~~y~k~GF~~~g~~~~~~~ 150 (150)
T PLN02706 118 GCYKVILDCSEENKAFYEKCGYVRKEIQMVKYF 150 (150)
T ss_pred CCCEEEEEeccccHHHHHHCcCEEehhheEecC
Confidence 999998776555578999999999999998864
|
|
| >PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.8e-09 Score=85.84 Aligned_cols=77 Identities=26% Similarity=0.392 Sum_probs=59.9
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||++.++...... .. .-+.|...+.|.++ |||+|+|+.||++++++|++ .|+..|.+.
T Consensus 4 ~~~ivg~~~~~~~~~~~-~~----------~~~~~i~~~~v~~~----~r~~Gig~~L~~~~~~~~~~-~g~~~i~~~~~ 67 (83)
T PF00583_consen 4 DGQIVGFASLRPPPEPF-DH----------GNHAYIHRLAVDPE----YRGQGIGSKLLQAAEEWARK-RGIKRIYLDVS 67 (83)
T ss_dssp TTEEEEEEEEEEEETTT-TT----------TTEEEEEEEEECGG----GTTSSHHHHHHHHHHHHHHH-TTESEEEEEEE
T ss_pred CCEEEEEEEEEECCCcc-cc----------CCEEEEEEEEEcHH----HhhCCCchhhhhhhhhhHHh-cCccEEEEEEe
Confidence 48999999999876322 00 12344445557877 99999999999999999999 599999765
Q ss_pred -cCCCcHHHHhhCCCe
Q 008466 539 -SGVGTRHYYRKLGYE 553 (564)
Q Consensus 539 -s~~~a~~fY~klGy~ 553 (564)
++..+.+||+|+||+
T Consensus 68 ~~n~~~~~~~~k~Gf~ 83 (83)
T PF00583_consen 68 PDNPAARRFYEKLGFE 83 (83)
T ss_dssp TTGHHHHHHHHHTTEE
T ss_pred CCCHHHHHHHHHcCCC
Confidence 355678999999996
|
3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A .... |
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-07 Score=96.37 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=108.6
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
|+-| +.||.|+.. ..+..+++.+.+. ...++++.||-- +.+.....|+++|.+||
T Consensus 60 v~kvRlTGGEPllR--~dl~eIi~~l~~~---------------------~~~~islTTNG~-~L~~~a~~Lk~AGl~rV 115 (322)
T COG2896 60 VEKVRLTGGEPLLR--KDLDEIIARLARL---------------------GIRDLSLTTNGV-LLARRAADLKEAGLDRV 115 (322)
T ss_pred cceEEEeCCCchhh--cCHHHHHHHHhhc---------------------ccceEEEecchh-hHHHHHHHHHHcCCcEE
Confidence 6667 889999764 3455566655442 124677777764 77889999999999999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc---EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK---VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~---v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
.+.+.|.+++..++|.+.-.++++++.++.+.++|+. +++.+|-|+ +..++.+.++++.+ .++ .+.+--+
T Consensus 116 NVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgv---Nd~ei~~l~e~~~~---~~~-~lrfIE~ 188 (322)
T COG2896 116 NVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGV---NDDEIEDLLEFAKE---RGA-QLRFIEL 188 (322)
T ss_pred EeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCC---CHHHHHHHHHHHhh---cCC-ceEEEEE
Confidence 9999999999999999877799999999999999995 556777764 55666666666653 333 5666666
Q ss_pred eecCCChhHHHHHcCCCCCCCHHHHHHHHHH
Q 008466 338 LVIRGTGLYELWKTGRYRNYPPEQLVDIVAR 368 (564)
Q Consensus 338 ~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~ 368 (564)
++... ...|..+ ..++.++..+.+..
T Consensus 189 m~~g~---~~~~~~~--~~~~~~~i~~~l~~ 214 (322)
T COG2896 189 MPLGE---GNSWRLD--KYLSLDEILRKLEE 214 (322)
T ss_pred eecCc---ccchhhh--ccccHHHHHHHHHh
Confidence 65543 1223333 24677777777665
|
|
| >KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=99.47 Aligned_cols=269 Identities=13% Similarity=0.191 Sum_probs=167.5
Q ss_pred HHHHHHHHHHhhccCCCccCHHHHHHHHHHHhCCCCCCCHHHHHHhCChhhHHHhhhHHhcCCCCccCCceeEEeec-CC
Q 008466 35 AIAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMS-KP 113 (564)
Q Consensus 35 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~i~~~~~~~~~~~l~~~l~~kp~rt~sgv~vvavmt-~p 113 (564)
+.+.+..++...+ ...++.-++|| +-|.- ...||+-+.+..+|++- ..+. |...++|. +.
T Consensus 31 ~~~a~~~~~~~~~-prn~Wtr~eik----~iYdt----PLldL~f~aa~~HRk~H----dp~k------VQqCTLlsIKt 91 (380)
T KOG2900|consen 31 TLGALQYALSLDE-PRNSWTRSEIK----EIYDT----PLLDLTFAAALQHRKWH----DPTK------VQQCTLLSIKT 91 (380)
T ss_pred hhhhhHHHhhccC-CcccccHHHHH----HHhcc----hHHHHHHHHHHHHhhhC----Cccc------eeeeEEEEeec
Confidence 3445566666555 45666665544 45653 35677766666666531 1111 22333332 33
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMS 193 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~ 193 (564)
.+|. ..|.||++. +.--||.+- .+.-...+++.+....+..|- .-+-||..+..
T Consensus 92 GGCs------EDCkYCaQS--------SRy~TGvKA-------~klmk~DeVi~~Ak~AK~~GS-----TRFCmGaAWRD 145 (380)
T KOG2900|consen 92 GGCS------EDCKYCAQS--------SRYDTGVKA-------EKLMKVDEVIKEAKEAKRNGS-----TRFCMGAAWRD 145 (380)
T ss_pred CCcc------cccchhhhh--------cccccchhH-------HHHhhHHHHHHHHHHHHhcCC-----ceeecchhhhh
Confidence 5677 699999642 222244321 122233344444445555552 22346655533
Q ss_pred C--CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHH
Q 008466 194 L--PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDV 271 (564)
Q Consensus 194 l--~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~v 271 (564)
+ ....+.++++.|.+.-. .++.+-..-..++.+....|+++|.+-..-++.|.-+--
T Consensus 146 ~~GRk~~fk~IlE~ikevr~---------------------MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyY 204 (380)
T KOG2900|consen 146 MKGRKSAFKRILEMIKEVRD---------------------MGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYY 204 (380)
T ss_pred hccchhHHHHHHHHHHHHHc---------------------CCceeeeeeccccHHHHHHHHhccceecccCccchhhhh
Confidence 2 22344555555554221 233333344567899999999999999999998864443
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 272 ARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 272 L~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
-+ +=-..|.+|-++.+..++++|++++..=|.|| ||..++-+--+-.+.. ..-.|+.+.|..|..++|||+.+..
T Consensus 205 sk-vItTRtYDdRL~Ti~nvr~aGikvCsGGIlGL-GE~e~DriGlihtLat-mp~HPESvPiN~LvaikGTP~~d~~-- 279 (380)
T KOG2900|consen 205 SK-VITTRTYDDRLQTIKNVREAGIKVCSGGILGL-GESEDDRIGLIHTLAT-MPPHPESVPINRLVAIKGTPMADEK-- 279 (380)
T ss_pred cc-cceecchHHHHHHHHHHHHhcceecccccccc-cccccceeeeeeeecc-CCCCCcccccceEEecCCcccchhh--
Confidence 33 33445789999999999999999999999999 8887764443333322 2456899999999999999998853
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
-+++.-++.+.+++.+.-.+|+.
T Consensus 280 --~k~l~i~e~lR~IaTARIvMPKa 302 (380)
T KOG2900|consen 280 --SKKLQIDEILRTIATARIVMPKA 302 (380)
T ss_pred --cccccHHHHHHHHhhhheechHH
Confidence 24678899999998877777653
|
|
| >PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.8e-09 Score=90.03 Aligned_cols=79 Identities=28% Similarity=0.466 Sum_probs=61.4
Q ss_pred eeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHH
Q 008466 445 VANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAER 524 (564)
Q Consensus 445 ~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~ 524 (564)
...+...+|++.++ +.+|||+.+. +. .. --+.| |+++ |||+|+|++||+.+++
T Consensus 39 ~~~~~~~~~v~~~~---~~ivG~~~~~-~~-----------~~---i~~l~-----v~p~----~r~~Gig~~Ll~~~~~ 91 (117)
T PF13673_consen 39 LEEGSHTIFVAEEG---GEIVGFAWLE-PD-----------GE---ISHLY-----VLPE----YRGRGIGRALLDAAEK 91 (117)
T ss_dssp HCTCCCEEEEEEET---TEEEEEEEEE-TC-----------EE---EEEEE-----E-GG----GTTSSHHHHHHHHHHH
T ss_pred HHhcCCEEEEEEEC---CEEEEEEEEc-CC-----------Ce---EEEEE-----EChh----hcCCcHHHHHHHHHHH
Confidence 34444678888887 8999999997 22 11 11233 7777 9999999999999999
Q ss_pred HHHhcCCCcEEEEecCCCcHHHHhhCCC
Q 008466 525 IALGEHRSRKMAVISGVGTRHYYRKLGY 552 (564)
Q Consensus 525 ~A~~~~g~~~i~~~s~~~a~~fY~klGy 552 (564)
+|++ |+..|.+.++..|.+||+++||
T Consensus 92 ~~~~--~~~~l~~~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 92 EAKD--GIRRLTVEANERARRFYRKLGF 117 (117)
T ss_dssp HHTT--TCEEEEEEC-HHHHHHHHHTT-
T ss_pred HHHc--CCcEEEEEeCHHHHHHHHhCCC
Confidence 9954 8999999999999999999998
|
|
| >PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-06 Score=92.99 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=108.0
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCC-
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCT- 258 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~- 258 (564)
+..| |+| |.|.. ..+.+.++++.+.+.-.. +. .....+|+.|+- +.+ .++.|.+.|..
T Consensus 174 v~nIvfmGmGEPLl-n~d~v~~~i~~l~~~~~~-~~--------------is~r~ItisT~G--l~~-~i~~L~~~gl~~ 234 (368)
T PRK14456 174 ITNIVFMGMGEPLL-NTDNVFEAVLTLSTRKYR-FS--------------ISQRKITISTVG--ITP-EIDRLATSGLKT 234 (368)
T ss_pred ccEEEEeCcCcccc-CHHHHHHHHHHHhccccc-cC--------------cCcCeeEEECCC--ChH-HHHHHHHcCCCc
Confidence 5555 899 99965 445566777777653110 10 012468888874 444 58999999985
Q ss_pred eEEEccCCCCHHHHHhc----CCCCCHHHHHHHHH-HHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCe
Q 008466 259 RLEIGVQSTYEDVARDT----NRGHTVAAVADCFC-LAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADG 331 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i----~Rght~~~~~~ai~-~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~ 331 (564)
+|.|.+.|.+++..+.+ +|+++.+++.++++ .+++.|..+. .=+|.|+ +++.++..+.++.+. .+ +-+
T Consensus 235 ~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~Gv-NDs~eda~~L~~~l~---~~-~~~ 309 (368)
T PRK14456 235 KLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGI-NDSPEDARKLIRFAS---RF-FCK 309 (368)
T ss_pred eEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCC-CCCHHHHHHHHHHHh---cC-CCe
Confidence 99999999999999988 35889999999998 5777887754 4678787 688887777776664 23 356
Q ss_pred EEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 332 LKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 332 i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
|.+-|+.+..+.+ |++++.+.... +...+.
T Consensus 310 VnlIpyn~~~~~~---------~~~ps~e~i~~-F~~~L~ 339 (368)
T PRK14456 310 INLIDYNSIVNIK---------FEPVCSSTRER-FRDRLL 339 (368)
T ss_pred eEEeeeccCCCCC---------CCCCCHHHHHH-HHHHHH
Confidence 7777777776665 34566665444 444443
|
|
| >PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-06 Score=90.52 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=104.6
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCe
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTR 259 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~r 259 (564)
+..| |+| |.|+. ..+.+.++++.+.+...-.+ ....+|++|+-- .+.++.|.+.|..+
T Consensus 156 i~nIvfmGmGEPLl-n~~~v~~~l~~l~~~~Gl~~----------------~~r~itvsT~G~---~~~i~~L~~~~l~~ 215 (354)
T PRK14460 156 LRNLVFMGMGEPLL-NLDEVMRSLRTLNNEKGLNF----------------SPRRITVSTCGI---EKGLRELGESGLAF 215 (354)
T ss_pred eeEEEEecCCcccC-CHHHHHHHHHHHhhhhccCC----------------CCCeEEEECCCC---hHHHHHHHhCCCcE
Confidence 6666 777 88876 45555556665554211001 123588888653 67889999999999
Q ss_pred EEEccCCCCHHHHHhcCCC---CCHHHHHHHHHHH-HHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEE
Q 008466 260 LEIGVQSTYEDVARDTNRG---HTVAAVADCFCLA-KDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLK 333 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rg---ht~~~~~~ai~~l-r~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~ 333 (564)
+.|.+.|.+++..+.+.++ ++.+++.++++.. ...|-++. +-+|.|+ +++.++..+.++.+. .++ .+|.
T Consensus 216 L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~Gv-NDs~ed~~~l~~~l~---~~~-~~Vn 290 (354)
T PRK14460 216 LAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGV-NDSLEHARELVRLLS---RTK-CKLN 290 (354)
T ss_pred EEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCC-CCCHHHHHHHHHHHh---cCC-CcEE
Confidence 9999999999999988664 5889999988754 44455544 4566665 889888777776664 333 4688
Q ss_pred EeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 334 iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
+-|+.+..|.+ |++++.+++.+...
T Consensus 291 LIpyn~~~g~~---------y~~p~~e~v~~f~~ 315 (354)
T PRK14460 291 LIVYNPAEGLP---------YSAPTEERILAFEK 315 (354)
T ss_pred EEcCCCCCCCC---------CCCCCHHHHHHHHH
Confidence 88888877765 35677766555443
|
|
| >TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.5e-07 Score=95.88 Aligned_cols=164 Identities=18% Similarity=0.259 Sum_probs=116.6
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEE---EeeCCCCCHHHHHHHHHcCCCe
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTI---ETRPDYCLGPHLRQMLSYGCTR 259 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eiti---EtrPd~i~~e~L~~L~~~G~~r 259 (564)
+.+|+||.|..++...+.+++..+.. .. + ...+++.. -..|..++++.++.|+++|...
T Consensus 145 ~VvltGGEPL~~~d~~L~~ll~~l~~-i~-~----------------~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~ 206 (321)
T TIGR03821 145 EVILSGGDPLMAKDHRLDWLLNLLEQ-IP-H----------------LKRLRIHTRLPVVIPDRITSGLCDLLANSRLQT 206 (321)
T ss_pred EEEEeCcccccCCchHHHHHHHHHHh-CC-C----------------CcEEEEecCcceeeHHHhhHHHHHHHHhcCCcE
Confidence 34589999999988888888877754 11 1 12233332 2455678999999999999766
Q ss_pred E-EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 260 L-EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 260 v-siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
+ .+.+.+.. ++- +++.+|++.++++|+.+.. -++-|+ +++.+++.+.++.+. .+++.-..+|.
T Consensus 207 ~~~~h~dh~~-Ei~---------d~~~~ai~~L~~~Gi~v~~qtvllkgi-NDn~~~l~~L~~~l~---~~gv~pyyl~~ 272 (321)
T TIGR03821 207 VLVVHINHAN-EID---------AEVADALAKLRNAGITLLNQSVLLRGV-NDNADTLAALSERLF---DAGVLPYYLHL 272 (321)
T ss_pred EEEeeCCChH-hCc---------HHHHHHHHHHHHcCCEEEecceeeCCC-CCCHHHHHHHHHHHH---HcCCeeCcccc
Confidence 5 34555542 221 5588899999999998654 566666 678888888888776 46777777888
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCCh
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPM 388 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~ 388 (564)
+.+..|+.- + ..+.++..+++..+...++-+ .+.+...|+|.
T Consensus 273 ~~p~gg~~~--------f-~v~~~~~~~i~~~l~~~~sG~-~~P~~v~d~pg 314 (321)
T TIGR03821 273 LDKVQGAAH--------F-DVDDERARALMAELLARLPGY-LVPRLVREIPG 314 (321)
T ss_pred cCCCCCccc--------c-cCCHHHHHHHHHHHHHhCCCC-ccceeEEEcCC
Confidence 888887652 2 378999999999999988644 34556667764
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc. |
| >PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.9e-07 Score=89.11 Aligned_cols=153 Identities=9% Similarity=0.084 Sum_probs=102.8
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC-CHHHHHHHHHcCCCeEEEcc
Q 008466 186 LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC-LGPHLRQMLSYGCTRLEIGV 264 (564)
Q Consensus 186 ~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i-~~e~L~~L~~~G~~rvsiGv 264 (564)
|.||.|+ +.++.+.++++.+++. . +.++++|+--.. ..+.++.+.+ .++.|.+++
T Consensus 76 ~sGGEPl-l~~~~~~~l~~~~k~~-g---------------------~~i~l~TNG~~~~~~~~~~~ll~-~~d~v~isl 131 (246)
T PRK11145 76 ASGGEAI-LQAEFVRDWFRACKKE-G---------------------IHTCLDTNGFVRRYDPVIDELLD-VTDLVMLDL 131 (246)
T ss_pred EeCccHh-cCHHHHHHHHHHHHHc-C---------------------CCEEEECCCCCCcchHHHHHHHH-hCCEEEECC
Confidence 7899997 4666666777777652 1 246777766432 3577777776 478999999
Q ss_pred CCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCC-CCeEEEeeeeecC
Q 008466 265 QSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFR-ADGLKIYPTLVIR 341 (564)
Q Consensus 265 QS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~-pd~i~iy~l~v~~ 341 (564)
.+++++..+.+.. .+.+.+++.++.+++.|+++.+ -+|.|+ .++.+++.+.++++. .++ +..+.+.|+.+.+
T Consensus 132 k~~~~e~~~~~~g-~~~~~~l~~i~~l~~~g~~v~i~~~li~g~-nd~~~ei~~l~~~l~---~l~~~~~~~l~~~~~~~ 206 (246)
T PRK11145 132 KQMNDEIHQNLVG-VSNHRTLEFARYLAKRNQKTWIRYVVVPGW-TDDDDSAHRLGEFIK---DMGNIEKIELLPYHELG 206 (246)
T ss_pred CcCChhhcccccC-CChHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHH---hcCCcceEEEecCCccc
Confidence 9999999888854 4568889999999999998664 456665 555666666666654 232 5677777777766
Q ss_pred CChhHH---HHHcCCCCCCCHHHHHHHHH
Q 008466 342 GTGLYE---LWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 342 GT~L~~---~~~~G~~~~~~~ee~~~~~~ 367 (564)
+.+... .++--.+++++.+++.+...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ 235 (246)
T PRK11145 207 KHKWEAMGEEYKLDGVKPPSKETMERVKG 235 (246)
T ss_pred hhHHHHcCCcccccCCCCCCHHHHHHHHH
Confidence 654222 12222356777777655443
|
|
| >PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.1e-08 Score=79.43 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=56.6
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+++ +.+||++.+.... .. .+-..+.|+++ +||+|||++||+++.+.+..
T Consensus 3 ~~~~~~~~~---~~ivG~~~~~~~~----------~~-------~~i~~~~v~~~----~rg~Gig~~ll~~~~~~~~~- 57 (79)
T PF13508_consen 3 ERFFVAEDD---GEIVGFIRLWPNE----------DF-------AYIGYLAVDPE----YRGKGIGSKLLNYLLEKAKS- 57 (79)
T ss_dssp EEEEEEEET---TEEEEEEEEEETT----------TE-------EEEEEEEE-GG----GTTSSHHHHHHHHHHHHHTC-
T ss_pred cEEEEEEEC---CEEEEEEEEEEcC----------CE-------EEEEEEEECHH----HcCCCHHHHHHHHHHHHcCC-
Confidence 345555554 8899999996443 11 12223447877 99999999999999888754
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCee
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYEL 554 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~ 554 (564)
..+.+.++..+.+||+|+||++
T Consensus 58 ---~~i~l~~~~~~~~fY~~~GF~~ 79 (79)
T PF13508_consen 58 ---KKIFLFTNPAAIKFYEKLGFEE 79 (79)
T ss_dssp ---SEEEEEEEHHHHHHHHHTTEEE
T ss_pred ---CcEEEEEcHHHHHHHHHCcCCC
Confidence 3677777888999999999974
|
... |
| >PRK13762 tRNA-modifying enzyme; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-06 Score=92.08 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=105.6
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCC
Q 008466 187 MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQS 266 (564)
Q Consensus 187 ~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS 266 (564)
++|.|+..| .+.++++.+++. .+.+.+.|+-. + ++.++.| ..+.+.|.+.+.+
T Consensus 137 l~GEPlL~p--~l~eli~~~k~~----------------------Gi~~~L~TNG~-~-~e~l~~L-~~~~d~i~VSLda 189 (322)
T PRK13762 137 LSGEPTLYP--YLPELIEEFHKR----------------------GFTTFLVTNGT-R-PDVLEKL-EEEPTQLYVSLDA 189 (322)
T ss_pred CCccccchh--hHHHHHHHHHHc----------------------CCCEEEECCCC-C-HHHHHHH-HhcCCEEEEEccC
Confidence 579999764 577777777642 13467788774 3 6788888 7789999999999
Q ss_pred CCHHHHHhcCCC---CCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC
Q 008466 267 TYEDVARDTNRG---HTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIR 341 (564)
Q Consensus 267 ~~d~vL~~i~Rg---ht~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~ 341 (564)
.++++.+.+.|+ .+.+.+.++++.+++.|..+.+ -++.|+.....+ +.++.+ + .++++.|.+-++.+..
T Consensus 190 ~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~~~~~~~ir~tlv~g~Nd~e~~---~~a~l~-~--~~~~~~Iel~~y~~~G 263 (322)
T PRK13762 190 PDEETYKKINRPVIPDAWERILETLELLPSKKTRTVIRITLVKGYNMHDPE---GFAKLI-E--RANPDFVEVKAYMHVG 263 (322)
T ss_pred CCHHHHHHHhCCCCCCcHHHHHHHHHHHHhCCCCEEEEEEEECCcCccHHH---HHHHHH-H--HcCCCEEEEECCeECC
Confidence 999999999874 5889999999999999887553 566666443333 333333 2 4579999988877765
Q ss_pred CChhHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 342 GTGLYELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 342 GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
... ++ ...-..++.+++.++...+.+..
T Consensus 264 ~~k-~~---l~~~~~p~~eev~~~~~~l~~~~ 291 (322)
T PRK13762 264 YSR-NR---LTRDNMPSHEEVREFAKELAEYT 291 (322)
T ss_pred Ccc-cc---ccccCCcCHHHHHHHHHHHHHhc
Confidence 543 11 11123478888887776666553
|
|
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.7e-07 Score=90.56 Aligned_cols=172 Identities=14% Similarity=0.161 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEE-EcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEee
Q 008466 162 YVQARSRIDQLKRLGHSVDKVEFIL-MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETR 240 (564)
Q Consensus 162 y~~~l~r~~~l~~~g~~~~kve~I~-~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtr 240 (564)
.+..+.+..+++..| +|.-+ +=|.|+..|. +..|++.+++. ..+--++++||
T Consensus 146 Ll~w~~kVa~~Kgkg-----lEaHlDGqGEP~lYP~--l~~lVqalk~~--------------------~~v~vVSmQTn 198 (414)
T COG2100 146 LLEWFEKVARFKGKG-----LEAHLDGQGEPLLYPH--LVDLVQALKEH--------------------KGVEVVSMQTN 198 (414)
T ss_pred HHHHHHHHHhhhCCC-----eEEEecCCCCCccchh--HHHHHHHHhcC--------------------CCceEEEEeeC
Confidence 334444455555333 78776 6689988876 44455544431 23456899999
Q ss_pred CCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhc-CC-CCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHH
Q 008466 241 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDT-NR-GHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLE 316 (564)
Q Consensus 241 Pd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i-~R-ght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~ 316 (564)
--.++++.++.|.++|.+|+.+.+.|.|++..+.+ ++ -++++.+.+..+.+.++|+.+.. -+++|+ +.+++..
T Consensus 199 g~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG~---ND~E~~~ 275 (414)
T COG2100 199 GVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPGV---NDDEMPK 275 (414)
T ss_pred ceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCCc---ChHHHHH
Confidence 99999999999999999999999999999999954 44 58999999999999999999653 555555 4455555
Q ss_pred HHHHHhcC---CCCCCCeEEEeeeeecC-CChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 317 SFREFFES---PLFRADGLKIYPTLVIR-GTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 317 t~~~~~~~---~~l~pd~i~iy~l~v~~-GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
-+.++.+. ....|-.+.-| .+.+ |-.- -.-++.+..+....+.+.-.
T Consensus 276 iIe~A~~iGaGkk~p~lgiQky--ipyk~GRkp------~~~k~~~fkeFYrwLrelEk 326 (414)
T COG2100 276 IIEWAREIGAGKKWPPLGIQKY--IPYKFGRKP------VIAKVWPFKEFYRWLRELEK 326 (414)
T ss_pred HHHHHHHhCCCCCCCCcceEEe--eeecccCCc------cccccCcHHHHHHHHHHHHH
Confidence 55555543 22334444333 2222 1110 01245666676666655443
|
|
| >PRK03624 putative acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8e-08 Score=86.21 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=65.0
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+.+ +.+||++.+.... .... ++ .+.|+++ |||+|+|++||+.++++|++
T Consensus 45 ~~~~v~~~~---~~~vG~~~~~~~~----------~~~~---i~----~i~v~p~----~rg~Gig~~ll~~~~~~~~~- 99 (140)
T PRK03624 45 SLFLVAEVG---GEVVGTVMGGYDG----------HRGW---AY----YLAVHPD----FRGRGIGRALVARLEKKLIA- 99 (140)
T ss_pred ceEEEEEcC---CcEEEEEEeeccC----------CCce---EE----EEEECHH----HhCCCHHHHHHHHHHHHHHH-
Confidence 345666654 7899999876432 1111 11 1336666 99999999999999999999
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc-eEeeec
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP-YMVKYL 563 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~-~m~K~l 563 (564)
.|++++.+. .|..+..||+|+||+..+. .|.+.|
T Consensus 100 ~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~~~~~~~ 137 (140)
T PRK03624 100 RGCPKINLQVREDNDAVLGFYEALGYEEQDRISLGKRL 137 (140)
T ss_pred CCCCEEEEEEecCcHHHHHHHHHcCCccccEEehhhcc
Confidence 599998654 4567899999999998874 555544
|
|
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-06 Score=90.28 Aligned_cols=153 Identities=15% Similarity=0.140 Sum_probs=107.2
Q ss_pred EEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEE
Q 008466 183 EFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLE 261 (564)
Q Consensus 183 e~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvs 261 (564)
..| |.||.|+..|. +.++++.+.+. ...+.+.||--.+ .+.++.++.+|...|+
T Consensus 74 ~~V~i~GGEPLL~pd--l~eiv~~~~~~----------------------g~~v~l~TNG~ll-~~~~~~l~~~~~~~i~ 128 (318)
T TIGR03470 74 PVVSIPGGEPLLHPE--IDEIVRGLVAR----------------------KKFVYLCTNALLL-EKKLDKFEPSPYLTFS 128 (318)
T ss_pred CEEEEeCcccccccc--HHHHHHHHHHc----------------------CCeEEEecCceeh-HHHHHHHHhCCCcEEE
Confidence 345 67999987653 56677766532 1247788887655 4568889999999999
Q ss_pred EccCCCCHHHHHh-cCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec
Q 008466 262 IGVQSTYEDVARD-TNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVI 340 (564)
Q Consensus 262 iGvQS~~d~vL~~-i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~ 340 (564)
|.+.+.. ++.+. .++..+.+.++++++.++++|+.+.+.+.+ +++++.+++.+.++.+. +++++.+.+.|..+.
T Consensus 129 VSLDG~~-e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv-~~~~n~~ei~~~~~~~~---~lGv~~i~i~p~~~~ 203 (318)
T TIGR03470 129 VHLDGLR-EHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTL-FNDTDPEEVAEFFDYLT---DLGVDGMTISPGYAY 203 (318)
T ss_pred EEEecCc-hhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEE-eCCCCHHHHHHHHHHHH---HcCCCEEEEecCccc
Confidence 9999875 44444 356678999999999999999987664432 25688888888888775 578898888766554
Q ss_pred CCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 341 RGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 341 ~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
..++- .. ..++.++..+++..++..
T Consensus 204 ~~a~~-----~~--~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 204 EKAPD-----QD--HFLGRRQTKKLFREVLSN 228 (318)
T ss_pred ccccc-----cc--cccCHHHHHHHHHHHHhh
Confidence 33321 11 135677777777666553
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >PRK13745 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-06 Score=91.80 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=110.5
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEE
Q 008466 182 VEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLE 261 (564)
Q Consensus 182 ve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvs 261 (564)
+...|.||.|+..+.....++++.+.+... ...+.+++.||--.++++.++.|++.|+ .|.
T Consensus 69 v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~------------------~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ 129 (412)
T PRK13745 69 VLFTWHGGETLMRPLSFYKKALELQKKYAR------------------GRQIDNCIQTNGTLLTDEWCEFFRENNF-LVG 129 (412)
T ss_pred EEEEEEccccCCCcHHHHHHHHHHHHHHcC------------------CCceEEEEeecCEeCCHHHHHHHHHcCe-EEE
Confidence 445578999999988777777765543322 2346789999999999999999999997 999
Q ss_pred EccCCCCHHHHHhcCC---C-CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 262 IGVQSTYEDVARDTNR---G-HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 262 iGvQS~~d~vL~~i~R---g-ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
|.+.+. +++-+...+ | .+.+.++++++.++++|+.+.+-..+.- .+.+...+.++++. +++++.+.+.|+
T Consensus 130 ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i~~vv~~--~n~~~~~e~~~~~~---~lg~~~~~~~p~ 203 (412)
T PRK13745 130 VSIDGP-QEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNAMAVVND--FNADYPLDFYHFFK---ELDCHYIQFAPI 203 (412)
T ss_pred EEecCC-HHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEEEEEEEcC--CccccHHHHHHHHH---HcCCCeEEEEec
Confidence 999986 445444332 2 4889999999999999998765444432 33344445555554 577889988887
Q ss_pred eec-----CCChhHHHHH--cCCC--CCCCHHHHHHHHHHHHH
Q 008466 338 LVI-----RGTGLYELWK--TGRY--RNYPPEQLVDIVARILA 371 (564)
Q Consensus 338 ~v~-----~GT~L~~~~~--~G~~--~~~~~ee~~~~~~~~~~ 371 (564)
.+. .|..+...-. .+.. ..++.+++.+.+..+..
T Consensus 204 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~fl~~lf~ 246 (412)
T PRK13745 204 VERIVSHQDGRHLASLAQQEGGELAPFSVTPEQWGNFLCTIFD 246 (412)
T ss_pred cCccccccccccccCcccccccccCCCccCHHHHHHHHHHHHH
Confidence 663 2332221100 0111 13567788777766555
|
|
| >PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.1e-06 Score=86.44 Aligned_cols=211 Identities=15% Similarity=0.135 Sum_probs=127.0
Q ss_pred cCCceeEEeecC----CCCCccc-cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHc
Q 008466 101 ASGIAVVAVMSK----PHRCPHI-ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRL 175 (564)
Q Consensus 101 ~sgv~vvavmt~----p~~cphI-PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~ 175 (564)
..|-.|-+|+-. -..|+.. .-|+.+|.||..+. ..| . .+ -...+.+.+.......
T Consensus 85 ~dg~~ie~v~~~~~~~~t~cissq~GC~l~C~fC~tg~-~g~-------~--r~----------lt~~EI~~qv~~~~~~ 144 (343)
T PRK14469 85 EDGNTIESVMLFHPDRITACISTQVGCPVKCIFCATGQ-SGF-------V--RN----------LTTGEIVSQILAMEKE 144 (343)
T ss_pred CCCCEEEEEEEecCCCeEEEEEecCCCCCcCcCCCCCC-CCc-------c--cc----------CCHHHHHHHHHHHHHh
Confidence 445555555532 1257766 66889999994221 111 0 01 1122333333322221
Q ss_pred CCCCCcEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHH
Q 008466 176 GHSVDKVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQML 253 (564)
Q Consensus 176 g~~~~kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~ 253 (564)
. ..++..| |+| |.|+. ..+.+.++++.+.+.-... .....+|+.|+-. .+.++.|.
T Consensus 145 ~--~~~v~~Vvf~GmGEPLl-n~d~v~~~i~~l~~~~~~~----------------~g~~~itisTnG~---~~~i~~L~ 202 (343)
T PRK14469 145 E--KKKVGNVVYMGMGEPLL-NYENVIKSIKILNHKKMKN----------------IGIRRITISTVGI---PEKIIQLA 202 (343)
T ss_pred c--cCCcCeEEEEccChhhh-hHHHHHHHHHHHhchhccc----------------CCCCeEEEECCCC---hHHHHHHH
Confidence 1 1235555 788 99965 4555556666654321100 0123688888763 57889999
Q ss_pred HcCCC-eEEEccCCCCHHHHHh---cCCCCCHHHHHHHHHHHHHc-CCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCC
Q 008466 254 SYGCT-RLEIGVQSTYEDVARD---TNRGHTVAAVADCFCLAKDA-GFKVV--AHMMPDLPNVGVERDLESFREFFESPL 326 (564)
Q Consensus 254 ~~G~~-rvsiGvQS~~d~vL~~---i~Rght~~~~~~ai~~lr~~-G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~ 326 (564)
+.|.+ ++.+.+.+.+++..+. ++|+++.+++.++++.+.+. +.++. .=+|.|+ +++.++..+.++.+- .
T Consensus 203 ~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~-NDs~ed~~~La~llk---~ 278 (343)
T PRK14469 203 EEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGF-NDEIEDAKKLAELLK---G 278 (343)
T ss_pred hhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHh---c
Confidence 99987 7999999999999876 47889999999999866554 66655 3477775 677777666665553 2
Q ss_pred CCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHH
Q 008466 327 FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVAR 368 (564)
Q Consensus 327 l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~ 368 (564)
+ ..+|.+.|+.+..+ .+++++.+++.+....
T Consensus 279 ~-~~~VnLIpynp~~~----------~~~~ps~e~l~~f~~~ 309 (343)
T PRK14469 279 L-KVFVNLIPVNPTVP----------GLEKPSRERIERFKEI 309 (343)
T ss_pred c-CcEEEEEecCCCCc----------cCCCCCHHHHHHHHHH
Confidence 3 24567766665433 3667776665554433
|
|
| >TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=91.27 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=58.9
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||++.+....+ .. -+++. +.|+++ |||+|||++||++++++|++ .|+.+|.+.
T Consensus 107 ~g~iiG~i~l~~~~~---------~~---~~i~~----l~V~p~----~rGkG~G~~ll~~~~~~a~~-~g~~~I~l~v~ 165 (191)
T TIGR02382 107 SGDPRGYVTLRELND---------TD---ARIGL----LAVFPG----AQSRGIGAELMQTALNWCYA-RGLTRLRVATQ 165 (191)
T ss_pred CCeEEEEEEEEecCC---------Cc---eEEEE----EEECHH----HcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeC
Confidence 368899999975421 11 12331 226665 99999999999999999998 599999776
Q ss_pred -cCCCcHHHHhhCCCeeeCc
Q 008466 539 -SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g~ 557 (564)
.|..|..||+|+||+.++.
T Consensus 166 ~~N~~A~~~Y~klGF~~~~~ 185 (191)
T TIGR02382 166 MGNTAALRLYIRSGANIEST 185 (191)
T ss_pred CCCHHHHHHHHHcCCccccc
Confidence 5668999999999999885
|
This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583). |
| >TIGR01575 rimI ribosomal-protein-alanine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-07 Score=82.22 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=60.8
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+++.+++ +.+||++.+..+. ... .++ .+.|+++ |||+|+|++||+++++++.+.
T Consensus 32 ~~~~~~~~---~~~vg~~~~~~~~----------~~~---~i~----~~~v~~~----~rg~G~g~~ll~~~~~~~~~~- 86 (131)
T TIGR01575 32 CYLLARIG---GKVVGYAGVQIVL----------DEA---HIL----NIAVKPE----YQGQGIGRALLRELIDEAKGR- 86 (131)
T ss_pred eEEEEecC---CeEEEEEEEEecC----------CCe---EEE----EEEECHH----HcCCCHHHHHHHHHHHHHHHc-
Confidence 34444444 7899999987543 111 111 1236665 999999999999999999994
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
|.+++.+. .+..+..||+|+||+.++.
T Consensus 87 ~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 116 (131)
T TIGR01575 87 GVNEIFLEVRVSNIAAQALYKKLGFNEIAI 116 (131)
T ss_pred CCCeEEEEEecccHHHHHHHHHcCCCcccc
Confidence 99888663 4667899999999998874
|
Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. |
| >PRK10140 putative acetyltransferase YhhY; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.2e-07 Score=85.04 Aligned_cols=87 Identities=23% Similarity=0.365 Sum_probs=61.8
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+..++ +.+||++.+.... .+.. .-+-++.+ -|.+. |||+|||+.||+.+.++|++..
T Consensus 52 ~~~v~~~~---~~~vG~~~~~~~~----~~~~----~~~~~~~~-----~v~p~----~rg~Gig~~ll~~l~~~~~~~~ 111 (162)
T PRK10140 52 KQLVACID---GDVVGHLTIDVQQ----RPRR----SHVADFGI-----CVDSR----WKNRGVASALMREMIEMCDNWL 111 (162)
T ss_pred EEEEEEEC---CEEEEEEEEeccc----cccc----ceEEEEEE-----EECHH----HcCCCHHHHHHHHHHHHHHhhC
Confidence 34555444 7899999997432 1110 01112223 36665 9999999999999999998845
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
|+.++.+. +|..|++||+|+||+..|.
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~ 141 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKKYGFEIEGT 141 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHHCCCEEEee
Confidence 88887543 4778999999999999885
|
|
| >KOG3139 consensus N-acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.2e-07 Score=84.93 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=69.6
Q ss_pred EEEeeCCCeEE-EEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHH
Q 008466 442 RDYVANEGWET-FLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLME 520 (564)
Q Consensus 442 ~~y~a~gg~e~-fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~ 520 (564)
.+|--..+.++ |++.++ +.+ .||.+--..+. ||.- +-.|..++.|.++ |||||||++|++
T Consensus 47 yrYf~~~wp~~~~~a~d~-~~~-~VGai~ck~~~---~r~~----------~rgyi~mLaV~~e----~Rg~GIg~aLvr 107 (165)
T KOG3139|consen 47 YRYFVPNWPCFCFLALDE-KGD-TVGAIVCKLDT---HRNT----------LRGYIAMLAVDSE----YRGQGIGKALVR 107 (165)
T ss_pred HHhcccCCceEEEEEEcC-CCc-eEEEEEEeccc---cCCc----------ceEEEEEEEechh----hccccHHHHHHH
Confidence 34433344444 555443 344 69998877553 2221 2245555667777 999999999999
Q ss_pred HHHHHHHhcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 521 EAERIALGEHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 521 ~aE~~A~~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.|.+.+++ +|+..|++. +|..|.++|++|||...+.
T Consensus 108 ~aId~m~~-~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r 146 (165)
T KOG3139|consen 108 KAIDAMRS-RGYSEVVLETEVTNLSALRLYESLGFKRDKR 146 (165)
T ss_pred HHHHHHHH-CCCcEEEEeccccchHHHHHHHhcCceEecc
Confidence 99999999 599999886 4778999999999999773
|
|
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.9e-06 Score=79.74 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=79.3
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcC-CCe
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYG-CTR 259 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G-~~r 259 (564)
++.| |.||.|+..+. +..+++.+++. . ..+.+.|+- .+++.++.|+++| ++.
T Consensus 63 ~~~i~~sGGEPll~~~--l~~li~~~~~~-g---------------------~~v~i~TNg--~~~~~l~~l~~~g~~~~ 116 (191)
T TIGR02495 63 IDGVVITGGEPTLQAG--LPDFLRKVREL-G---------------------FEVKLDTNG--SNPRVLEELLEEGLVDY 116 (191)
T ss_pred CCeEEEECCcccCcHh--HHHHHHHHHHC-C---------------------CeEEEEeCC--CCHHHHHHHHhcCCCcE
Confidence 3444 78999977554 67777777651 1 246677766 3678999999999 599
Q ss_pred EEEccCCCCHHHHHhcCCCCCHH-HHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHHH
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVA-AVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFREF 321 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~-~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~~ 321 (564)
|.+.+++..+...+..++..+.+ ++.++++.+++.|+.+.+ -++.|... .+++.+.++.+
T Consensus 117 v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~--~~ei~~~~~~l 179 (191)
T TIGR02495 117 VAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLD--EEDLAEIATRI 179 (191)
T ss_pred EEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCC--HHHHHHHHHHh
Confidence 99999997665666667766665 999999999999997554 56667644 44455555544
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-07 Score=84.89 Aligned_cols=86 Identities=28% Similarity=0.425 Sum_probs=63.6
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHH-Hh
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIA-LG 528 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A-~~ 528 (564)
.-.|+.++ +++.+||++.++...+ ..-.-++.+| |.++ +|++|+|+.|++.++++| ++
T Consensus 50 ~~~~~v~~--~~g~iiG~~~~~~~~~----------~~~~~~~~~~-----v~~~----~~~~gig~~l~~~l~~~af~~ 108 (155)
T PF13420_consen 50 QRLFLVAE--EDGKIIGYVSLRDIDP----------YNHTAELSIY-----VSPD----YRGKGIGRKLLDELIEYAFKE 108 (155)
T ss_dssp TEEEEEEE--CTTEEEEEEEEEESSS----------GTTEEEEEEE-----EEGG----GTTSSHHHHHHHHHHHHH-HH
T ss_pred CcEEEEEE--cCCcEEEEEEEEeeec----------cCCEEEEeeE-----EChh----HCCCcHHHHHHHHHHHHhhhc
Confidence 55566665 3489999999985541 1112333333 5655 999999999999999999 77
Q ss_pred cCCCcEEEE---ecCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAV---ISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~---~s~~~a~~fY~klGy~~~g~ 557 (564)
+|+++|.+ ..|..+..||+|+||+.+|.
T Consensus 109 -~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~ 139 (155)
T PF13420_consen 109 -LGIHKIYLEVFSSNEKAINFYKKLGFEEEGE 139 (155)
T ss_dssp -TT-CEEEEEEETT-HHHHHHHHHTTEEEEEE
T ss_pred -cCeEEEEEEEecCCHHHHHHHHhCCCEEEEE
Confidence 69999853 35788999999999999984
|
... |
| >TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-05 Score=87.02 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=116.2
Q ss_pred cchHHHHHHHHHHHHHcC-CCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEE
Q 008466 159 YNPYVQARSRIDQLKRLG-HSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTI 237 (564)
Q Consensus 159 ~~~y~~~l~r~~~l~~~g-~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eiti 237 (564)
+.+-.+++....+..... .+...| ++.|||.|+. .+ .+.++++.+++. . +.+.+
T Consensus 53 ~~t~~evl~ev~~d~~~~~~~~ggV-tisGGGepl~-~~-~l~eLl~~lk~~-g---------------------i~taI 107 (404)
T TIGR03278 53 FIPPQVVLGEVQTSLGFRTGRDTKV-TISGGGDVSC-YP-ELEELTKGLSDL-G---------------------LPIHL 107 (404)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCEE-EEECCccccc-CH-HHHHHHHHHHhC-C---------------------CCEEE
Confidence 344455555554433221 122222 4456666654 33 556777777652 1 23566
Q ss_pred E-eeCC-CCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHH
Q 008466 238 E-TRPD-YCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVER 313 (564)
Q Consensus 238 E-trPd-~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~ 313 (564)
+ |+-. ..+++.++.++++|++.|.+.+.|+++++.+.+-..-..+.+++.++.+.+ ++.+. .-+++|+ +++.+
T Consensus 108 ~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGi-ND~ee- 184 (404)
T TIGR03278 108 GYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGV-NDGDV- 184 (404)
T ss_pred eCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCc-cCcHH-
Confidence 6 6654 458999999999999999999999999999985444455899999999998 56644 4677777 44444
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeeeeecCCChh--HHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 314 DLESFREFFESPLFRADGLKIYPTLVIRGTGL--YELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 314 ~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L--~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
..++++.+. ++++..+-+.++.......+ ...+....+++.+.++..+++.......
T Consensus 185 l~~ti~~L~---~lg~~~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~ 243 (404)
T TIGR03278 185 LWKTCADLE---SWGAKALILMRFANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEF 243 (404)
T ss_pred HHHHHHHHH---HCCCCEEEEEecccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 347777775 46788777766654322211 1111222356778888887766655443
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
| >cd02169 Citrate_lyase_ligase Citrate lyase ligase | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-07 Score=95.00 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=61.6
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|..|++ ++.+||+.++.. . +++ .+.|+++ |||+|+|++||++++++|+++ |
T Consensus 7 ~~~v~~~--~~~iVG~~~l~~-------------~----~I~----~vaV~p~----~Rg~GiG~~Ll~~l~~~a~~~-g 58 (297)
T cd02169 7 TVGIFDD--AGELIATGSIAG-------------N----VLK----CVAVCPK----YQGEGLALKIVSELINKAYEE-G 58 (297)
T ss_pred EEEEEEE--CCEEEEEEEecc-------------C----EEE----EEEECHH----HcCCCHHHHHHHHHHHHHHHC-C
Confidence 3455543 378999998851 0 111 1347776 999999999999999999995 9
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeC
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
+.++.+.++..+.+||+|+||+..+
T Consensus 59 ~~~i~L~t~~~~~~fYek~GF~~~~ 83 (297)
T cd02169 59 IFHLFLFTKPKNAKFFRGLGFKELA 83 (297)
T ss_pred CCEEEEEEcccHHHHHHHCCCEEec
Confidence 9999999988899999999999888
|
Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction. |
| >PRK10975 TDP-fucosamine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-07 Score=88.98 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=60.0
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||++.+....+ .. -+++ .+.|.+. |||||+|++||+.++++|++ +|+++|.+.
T Consensus 110 ~g~~vG~~~l~~~~~---------~~---~~i~----~~~V~p~----~rg~Gig~~Ll~~~~~~a~~-~g~~~i~l~v~ 168 (194)
T PRK10975 110 SGQIQGFVTLRELND---------TD---ARIG----LLAVFPG----AQGRGIGARLMQAALNWCQA-RGLTRLRVATQ 168 (194)
T ss_pred CCCEEEEEEEEecCC---------Cc---eEEE----EEEEChh----hcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeC
Confidence 367899999874320 11 1222 1236766 99999999999999999998 599999664
Q ss_pred -cCCCcHHHHhhCCCeeeCceE
Q 008466 539 -SGVGTRHYYRKLGYELEGPYM 559 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g~~m 559 (564)
.|..+..||+|+||+.+|..|
T Consensus 169 ~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 169 MGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred CCcHHHHHHHHHCCCeEeEEEe
Confidence 466789999999999999766
|
|
| >PRK07922 N-acetylglutamate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-07 Score=87.56 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=55.9
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCC
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGV 541 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~ 541 (564)
+.+||++.+....+ +.+ +++ .+.|+++ |||+|+|++||++++++|++ +|+.++.+.+.
T Consensus 55 ~~iiG~~~~~~~~~---------~~~---~i~----~l~V~p~----~rgkGiG~~Ll~~~~~~a~~-~g~~~l~~~~~- 112 (169)
T PRK07922 55 GEVVGCGALHVMWE---------DLA---EIR----TVAVDPA----ARGRGVGHAIVERLLDVARE-LGLSRVFVLTF- 112 (169)
T ss_pred CcEEEEEEEeecCC---------Cce---EEE----EEEECHH----HhCCCHHHHHHHHHHHHHHH-cCCCEEEEEec-
Confidence 78999998864320 111 222 2347776 99999999999999999999 59999976543
Q ss_pred CcHHHHhhCCCeeeCc
Q 008466 542 GTRHYYRKLGYELEGP 557 (564)
Q Consensus 542 ~a~~fY~klGy~~~g~ 557 (564)
+..||+|+||+..+.
T Consensus 113 -~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 113 -EVEFFARHGFVEIDG 127 (169)
T ss_pred -cHHHHHHCCCEECcc
Confidence 578999999998764
|
|
| >COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7e-06 Score=87.72 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCC
Q 008466 164 QARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDY 243 (564)
Q Consensus 164 ~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~ 243 (564)
+++.+.++.........+|...+.||.|+....+..+.+..... .... ...+..++.||--.
T Consensus 40 etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~~f~~~~~~l~~-k~~~-----------------~~~i~~siqTNg~L 101 (378)
T COG0641 40 ETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGLDFYRKAVALQQ-KYAN-----------------GKTISNALQTNGTL 101 (378)
T ss_pred HHHHHHHHHHHhhCCCCeeEEEEECCccccchHHHHHHHHHHHH-HHhc-----------------CCeeEEEEEEcccc
Confidence 34444443333333345577889999999988876666555332 2221 23456779999999
Q ss_pred CCHHHHHHHHHcCCCeEEEcc---CCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHH
Q 008466 244 CLGPHLRQMLSYGCTRLEIGV---QSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFRE 320 (564)
Q Consensus 244 i~~e~L~~L~~~G~~rvsiGv---QS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~ 320 (564)
++++..+.+++.|+ .|.|.+ +..+|......+=.-|.+.+.++++.|++.++++++... +.-++.+...+.+++
T Consensus 102 L~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~v--v~~~n~~~~~ei~~~ 178 (378)
T COG0641 102 LNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTV--VNRQNVLHPEEIYHF 178 (378)
T ss_pred cCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEE--EchhHhhCHHHHHHH
Confidence 99999999999999 777755 444444443333334799999999999999888776555 678888888888888
Q ss_pred HhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 321 FFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 321 ~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
+.+ ++...+.+.|++...++.. .+ .. ...+.+++.+.+..+...
T Consensus 179 l~~---~g~~~i~fip~~~~~~~~~-~~---~~-~~~~~~~~~~fl~~~~~~ 222 (378)
T COG0641 179 LKS---EGSKFIQFIPLVESDNRGD-SL---LE-FSVTAEEYGQFLIAIFDE 222 (378)
T ss_pred HHH---cccceEEEEecccCCCCCc-cc---cc-cccCHHHHHHHHHHHHHH
Confidence 863 4588899988765555431 11 11 135677777777666654
|
|
| >PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-05 Score=83.66 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=102.7
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC-C
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC-T 258 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~-~ 258 (564)
|..| |+| |.|+ +..+.+.++++.+.+... +. .....+|++|+-- . ..+..+.+.+. .
T Consensus 160 v~~Vv~~GmGEPL-ln~~~v~~~l~~l~~~~g--~~--------------~s~r~itvsT~G~--~-~~i~~l~d~~l~~ 219 (356)
T PRK14455 160 VSHIVVMGIGEPF-DNYDNVMDFLRIINDDKG--LA--------------IGARHITVSTSGI--A-PKIYDFADEGLQI 219 (356)
T ss_pred cceEEEecccccc-CCHHHHHHHHHHHhcccC--cc--------------cCCCceEEEecCc--h-HhHHHHHhcccCe
Confidence 6555 676 8885 456677777777764311 00 0123578887553 2 35556666653 4
Q ss_pred eEEEccCCCCHHHHHh---cCCCCCHHHHHHHHHHHHH-cCCcEEE-EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEE
Q 008466 259 RLEIGVQSTYEDVARD---TNRGHTVAAVADCFCLAKD-AGFKVVA-HMMPDLPNVGVERDLESFREFFESPLFRADGLK 333 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~---i~Rght~~~~~~ai~~lr~-~G~~v~~-~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~ 333 (564)
.+.+.+-+++++..+. ++|+++.+++.++++.+.+ .|.++.+ .+|++-.+++.++..+.++.+. .++ .+|.
T Consensus 220 ~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~---~l~-~~Vn 295 (356)
T PRK14455 220 NLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLK---GIK-CHVN 295 (356)
T ss_pred eEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHh---cCC-CcEE
Confidence 5779999999999985 7889999999999998766 4556654 5555555899888777776664 333 5777
Q ss_pred EeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHH
Q 008466 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARI 369 (564)
Q Consensus 334 iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~ 369 (564)
+-|+.+.++.+ |++++.+...+....+
T Consensus 296 LIPynp~~~~k---------y~~ps~e~l~~f~~~L 322 (356)
T PRK14455 296 LIPVNPVPERD---------YVRTPKEDIFAFEDTL 322 (356)
T ss_pred EEecCcCCCCC---------CcCCCHHHHHHHHHHH
Confidence 77887776653 5567777666554433
|
|
| >PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-05 Score=84.91 Aligned_cols=154 Identities=18% Similarity=0.136 Sum_probs=101.2
Q ss_pred cEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC-
Q 008466 181 KVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC- 257 (564)
Q Consensus 181 kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~- 257 (564)
++..| ||| |.|+. +.+.+..+++.+.+.-. +. .....+||+|+-- . ..+..+.+.|.
T Consensus 144 ~i~nIvfmGmGEPll-N~d~v~~~i~~l~~~~~--~~--------------~~~~~ItVsTnG~--~-p~i~~l~~~~~~ 203 (336)
T PRK14470 144 PITGVVFMGQGEPFL-NYDEVLRAAYALCDPAG--AR--------------IDGRRISISTAGV--V-PMIRRYTAEGHK 203 (336)
T ss_pred CCCEEEEEecCcccc-CHHHHHHHHHHHhCccc--cc--------------cCCCceEEEecCC--h-HHHHHHHhcCCC
Confidence 46666 889 99965 44556666666653210 00 1235788998753 2 35556666564
Q ss_pred CeEEEccCCCCHHHHHhcC---CCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeE
Q 008466 258 TRLEIGVQSTYEDVARDTN---RGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGL 332 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~---Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i 332 (564)
..|.+.+.+.+++..+.+. ++++.+++.++++...+.+-++. .-+|.|+ +++.++..+..+.+- .+ +-++
T Consensus 204 ~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~Gv-NDseeda~~La~llk---~l-~~~v 278 (336)
T PRK14470 204 FRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGV-NVGEEDAAALGRLLA---GI-PVRL 278 (336)
T ss_pred ceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecc-cCCHHHHHHHHHHHh---cC-CCeE
Confidence 7899999999999999884 46789999999999988776654 4678888 567776555554442 23 2366
Q ss_pred EEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHH
Q 008466 333 KIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARI 369 (564)
Q Consensus 333 ~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~ 369 (564)
.+.|+.+.++ .|++++.++.......+
T Consensus 279 nlI~~N~~~~----------~~~~p~~~~i~~f~~~l 305 (336)
T PRK14470 279 NPIAVNDATG----------RYRPPDEDEWNAFRDAL 305 (336)
T ss_pred EEeccCCCCC----------CccCCCHHHHHHHHHHH
Confidence 6666665332 57778877665554433
|
|
| >PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-05 Score=83.34 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=101.3
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC--
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC-- 257 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~-- 257 (564)
+..| |+| |.|+. ..+.+.++++.+.+.++ + ....+|++|.- ..+.++.|.+.++
T Consensus 149 ~~~IvfmGmGEPll-n~~~v~~~i~~l~~~~~--i----------------~~r~itvST~G---~~~~i~~L~~~~~~~ 206 (345)
T PRK14457 149 VSHVVFMGMGEPLL-NIDEVLAAIRCLNQDLG--I----------------GQRRITVSTVG---VPKTIPQLAELAFQR 206 (345)
T ss_pred CCEEEEEecCcccc-CHHHHHHHHHHHhcccC--C----------------ccCceEEECCC---chhhHHHHHhhhhhh
Confidence 5555 888 99976 45555556665544322 1 12357888733 2345777777662
Q ss_pred -----CeEEEccCCCCHHHHHhc---CCCCCHHHHHHHHHH-HHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCC
Q 008466 258 -----TRLEIGVQSTYEDVARDT---NRGHTVAAVADCFCL-AKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPL 326 (564)
Q Consensus 258 -----~rvsiGvQS~~d~vL~~i---~Rght~~~~~~ai~~-lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~ 326 (564)
..+.+.+-+.+++..+.+ +++++.+++.+++.. +.+.|-++. .=+|.|+ +++.++..+..+.+- .
T Consensus 207 ~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGv-NDs~e~a~~La~~l~---~ 282 (345)
T PRK14457 207 LGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGV-NDLPEHAEELANLLR---G 282 (345)
T ss_pred cccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCc-CCCHHHHHHHHHHHh---c
Confidence 368899999999999988 456788999887755 667786655 5788998 888888777776664 3
Q ss_pred CCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 327 FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 327 l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
++ -+|.+-|+.+.++. .|++++.++..+...
T Consensus 283 l~-~~VnLIPynp~~~~---------~~~~ps~e~i~~f~~ 313 (345)
T PRK14457 283 FQ-SHVNLIPYNPIDEV---------EFQRPSPKRIQAFQR 313 (345)
T ss_pred CC-CeEEEecCCCCCCC---------CCCCCCHHHHHHHHH
Confidence 43 36777777776654 456787777555443
|
|
| >TIGR00048 radical SAM enzyme, Cfr family | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.8e-05 Score=82.59 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=101.8
Q ss_pred cEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCC
Q 008466 181 KVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCT 258 (564)
Q Consensus 181 kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~ 258 (564)
++..| |+| |.|+. ..+.+.++++.+.+... +. .....+|++|+-- .+.+..|.+.+..
T Consensus 155 ~v~nVvfmGmGEPLl-n~d~v~~~l~~l~~~~g--~~--------------i~~~~itisT~G~---~~~i~~l~~~~l~ 214 (355)
T TIGR00048 155 RVSNVVFMGMGEPLL-NLNEVVKAMEIMNDDFG--LG--------------ISKRRITISTSGV---VPKIDILADKMLQ 214 (355)
T ss_pred CeeEEEEecCCchhh-CHHHHHHHHHHhhcccc--cC--------------cCCCeEEEECCCc---hHHHHHHHHhCCC
Confidence 36655 777 88865 55555666666653211 00 0113688888663 2578888887764
Q ss_pred -eEEEccCCCCHHHHHhc---CCCCCHHHHHHHHHH-HHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCe
Q 008466 259 -RLEIGVQSTYEDVARDT---NRGHTVAAVADCFCL-AKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADG 331 (564)
Q Consensus 259 -rvsiGvQS~~d~vL~~i---~Rght~~~~~~ai~~-lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~ 331 (564)
++.+.+-+.+++..+.+ +|.++.+++.++++. +++.|.++. .-+|.|+ +++.++..+..+.+. .++ -+
T Consensus 215 ~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~Gv-NDs~e~a~~La~llk---~l~-~~ 289 (355)
T TIGR00048 215 VALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGV-NDQVEHAEELAELLK---GTK-CK 289 (355)
T ss_pred cEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCC-CCCHHHHHHHHHHHh---cCC-Cc
Confidence 78899999999999876 677889999998875 566787755 5788888 778787666665553 343 46
Q ss_pred EEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHH
Q 008466 332 LKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 332 i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~ 366 (564)
|.+-|+.+.++. .|++++.+++.+..
T Consensus 290 VnLIPynp~~~~---------~~~~ps~e~i~~f~ 315 (355)
T TIGR00048 290 VNLIPWNPFPEA---------DYERPSNEQIDRFA 315 (355)
T ss_pred eEEEecccCCCC---------CCCCCCHHHHHHHH
Confidence 777777766554 35667766655443
|
A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains. |
| >KOG3397 consensus Acetyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-07 Score=87.48 Aligned_cols=77 Identities=23% Similarity=0.371 Sum_probs=58.0
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~ 540 (564)
++.+||.+||.--.+. +-|+.-| .|-|.++ .||+|+|+.||+.+|+|+|.. |++++.+.+.
T Consensus 65 ~~~VigH~rLS~i~n~--------~~al~VE------sVVV~k~----~RG~GFGk~lMk~~E~~~R~~-gf~~~yLsT~ 125 (225)
T KOG3397|consen 65 NDEVLGHSRLSHLPNR--------DHALWVE------SVVVKKD----QRGLGFGKFLMKSTEKWMREK-GFNEAYLSTD 125 (225)
T ss_pred ccceeeeeccccCCCC--------CceeEEE------EEEEehh----hccccHHHHHHHHHHHHHHHh-hhhheeeecc
Confidence 4788999999633222 1222222 2336776 999999999999999999995 9999988665
Q ss_pred CCcHHHHhhCCCeeeCc
Q 008466 541 VGTRHYYRKLGYELEGP 557 (564)
Q Consensus 541 ~~a~~fY~klGy~~~g~ 557 (564)
+-.+||+++||+...+
T Consensus 126 -DQ~~FYe~lGYe~c~P 141 (225)
T KOG3397|consen 126 -DQCRFYESLGYEKCDP 141 (225)
T ss_pred -cchhhhhhhcccccCc
Confidence 4467999999998775
|
|
| >COG0320 LipA Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-06 Score=84.72 Aligned_cols=100 Identities=21% Similarity=0.178 Sum_probs=88.7
Q ss_pred EEEEEe-eCCCC-CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcC--CcEEEEEecCCCCC
Q 008466 234 GMTIET-RPDYC-LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAG--FKVVAHMMPDLPNV 309 (564)
Q Consensus 234 eitiEt-rPd~i-~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G--~~v~~~lI~GLPge 309 (564)
..+||+ -||.. .++.|+.+.++|.+-+.-++||. ++....+.++-+.+..++.++.+|+.+ +..-+.+|+|| ||
T Consensus 148 ~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGL-GE 225 (306)
T COG0320 148 QTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETV-PRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGL-GE 225 (306)
T ss_pred CceEEEeCccccCCHHHHHHHHhcCcchhhcccccc-hhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeec-CC
Confidence 478886 88866 68899999999999999999998 777788999999999999999999998 55568999999 99
Q ss_pred CHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 310 GVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 310 t~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
|.+++.++++.+. +.++|.++|-+++
T Consensus 226 t~~Ev~e~m~DLr---~~gvdilTiGQYl 251 (306)
T COG0320 226 TDEEVIEVMDDLR---SAGVDILTIGQYL 251 (306)
T ss_pred cHHHHHHHHHHHH---HcCCCEEEecccc
Confidence 9999999999997 5789999998754
|
|
| >PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-05 Score=82.21 Aligned_cols=155 Identities=16% Similarity=0.105 Sum_probs=97.4
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCe
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTR 259 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~r 259 (564)
++.| |+| |.|+. ..+.+.++++.+.+... +. -....++++|+- +.+ .+..+....-..
T Consensus 149 i~~IvfmG~GEPl~-n~~~vi~~l~~l~~~~g--l~--------------~s~r~itVsTnG--l~~-~i~~l~~~~~~~ 208 (349)
T PRK14463 149 VRNIVFMGMGEPLA-NLDNVIPALQILTDPDG--LQ--------------FSTRKVTVSTSG--LVP-EMEELGREVTVN 208 (349)
T ss_pred ccEEEEecCCcchh-cHHHHHHHHHHhhcccc--cC--------------cCCceEEEECCC--chH-HHHHHhhccCeE
Confidence 4444 777 99874 44444444554432111 00 112367888765 233 344444443345
Q ss_pred EEEccCCCCHHHHHhc---CCCCCHHHHHHHHHHHHHc-CCcEEE-EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 260 LEIGVQSTYEDVARDT---NRGHTVAAVADCFCLAKDA-GFKVVA-HMMPDLPNVGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i---~Rght~~~~~~ai~~lr~~-G~~v~~-~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
+.+.+.|.++++.+.+ ||.++.+++.+++...... +-++.+ +++++-.+++.++..+..+.+. .++ -++.+
T Consensus 209 LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~---~l~-~~vnl 284 (349)
T PRK14463 209 LAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLS---DIP-SKVNL 284 (349)
T ss_pred EEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHh---ccC-ceEEE
Confidence 6689999999999997 8899999999998776654 345554 5555556999888777776664 333 36777
Q ss_pred eeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHH
Q 008466 335 YPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARI 369 (564)
Q Consensus 335 y~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~ 369 (564)
-|+.+..| ..|++++.++..+....+
T Consensus 285 IPyn~~~~---------~~~~~ps~e~i~~f~~~L 310 (349)
T PRK14463 285 IPFNEHEG---------CDFRSPTQEAIDRFHKYL 310 (349)
T ss_pred EecCCCCC---------CCCCCCCHHHHHHHHHHH
Confidence 77776655 247778877666554433
|
|
| >TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.3e-07 Score=91.99 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=63.2
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+.+ +.+||++.+.+.. . .+. -+++ .+.|+++ |||+|+|++||+.++++|++
T Consensus 158 ~~~~v~~~~---g~iVG~~~~~~~~-~-------~~~---~eI~----~i~V~P~----yRG~GiG~~Ll~~l~~~a~~- 214 (266)
T TIGR03827 158 VVYFGVEDG---GKIIALASAEMDP-E-------NGN---AEMT----DFATLPE----YRGKGLAKILLAAMEKEMKE- 214 (266)
T ss_pred cEEEEEEEC---CEEEEEEEEecCC-C-------CCc---EEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-
Confidence 445666665 7899999875432 0 011 1232 1337776 99999999999999999999
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.|+..+.+. .+.++..+|+|+||+.+|.
T Consensus 215 ~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~ 245 (266)
T TIGR03827 215 KGIRTAYTIARASSYGMNITFARLGYAYGGT 245 (266)
T ss_pred CCCcEEEeehhhcchhHHHHHHHcCCccccE
Confidence 599998554 4668899999999999884
|
Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution. |
| >PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-05 Score=81.73 Aligned_cols=153 Identities=13% Similarity=0.113 Sum_probs=99.1
Q ss_pred CcEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC
Q 008466 180 DKVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC 257 (564)
Q Consensus 180 ~kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~ 257 (564)
.++..| |+| |.|+. ..+.+.++++.+.+... +. . ....+|+.|.-. ...++.|.+.+.
T Consensus 142 ~~i~~Vvf~GmGEPll-n~~~v~~~i~~l~~~~g--~~-------------l-~~r~itvST~G~---~~~i~~L~~~~l 201 (343)
T PRK14468 142 REIRNVVLMGMGEPLL-NYENVLKAARIMLHPQA--LA-------------M-SPRRVTLSTVGI---PKGIRRLAEEDL 201 (343)
T ss_pred CCccEEEEeccCcccc-CHHHHHHHHHHhccccc--cc-------------c-cCceEEEECCCC---hHHHHHHHHhCc
Confidence 356666 787 99976 44444444444421100 00 0 112588888662 457788888776
Q ss_pred C-eEEEccCCCCHHHHHhcC---CCCCHHHHHHHHHHH-HHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCC
Q 008466 258 T-RLEIGVQSTYEDVARDTN---RGHTVAAVADCFCLA-KDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRAD 330 (564)
Q Consensus 258 ~-rvsiGvQS~~d~vL~~i~---Rght~~~~~~ai~~l-r~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd 330 (564)
. .|.+.+-+.+++..+++. ++++.+++.++++.. ++.+-++. .-+|.|+ +++.++..+..+.+. .+ ..
T Consensus 202 ~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~Gv-NDs~e~~~~L~~ll~---~~-~~ 276 (343)
T PRK14468 202 GVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGV-NDHLWQAELLADLLR---GL-VS 276 (343)
T ss_pred CcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCC-cCCHHHHHHHHHHHh---cC-Cc
Confidence 4 799999999999999884 678999999999744 44555554 5677787 788877666666554 23 34
Q ss_pred eEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHH
Q 008466 331 GLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 331 ~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~ 366 (564)
+|.+-|+.+.++ ..|++++.++..+..
T Consensus 277 ~VnLIPynp~~~---------~~~~~ps~e~i~~f~ 303 (343)
T PRK14468 277 HVNLIPFNPWEG---------SPFQSSPRAQILAFA 303 (343)
T ss_pred EEEEEcCCCCCC---------CCCCCCCHHHHHHHH
Confidence 666666665443 346778877655543
|
|
| >PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.2e-05 Score=82.32 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=105.4
Q ss_pred CcEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC
Q 008466 180 DKVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC 257 (564)
Q Consensus 180 ~kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~ 257 (564)
.+|..| ||| |.|. ++.+.+.++++.+.+..+..+. .....+|++|.-- ...++.|.+.+.
T Consensus 175 ~~i~nVvfmGmGEPL-lN~d~V~~~i~~l~~~~~~g~g--------------is~r~ITvST~Gl---~~~i~~la~~~l 236 (373)
T PRK14459 175 GRLSNVVFMGMGEPL-ANYKRVVAAVRRITAPAPEGLG--------------ISARNVTVSTVGL---VPAIRKLADEGL 236 (373)
T ss_pred CceeEEEEecCCcch-hhHHHHHHHHHHHhCcccccCC--------------ccCCEEEEECcCc---hhHHHHHHHhcC
Confidence 346666 899 9995 3556666677766542100000 1224688887531 236778888776
Q ss_pred C-eEEEccCCCCHHHHHhcC---CCCCHHHHHHHHHHHH-HcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCC--
Q 008466 258 T-RLEIGVQSTYEDVARDTN---RGHTVAAVADCFCLAK-DAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFR-- 328 (564)
Q Consensus 258 ~-rvsiGvQS~~d~vL~~i~---Rght~~~~~~ai~~lr-~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~-- 328 (564)
. +|.+.+-|.+++..+.+- |.++.+++.++++... +.|.++. .-+|.|+ +++.++..+..+.+. .++
T Consensus 237 ~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~Gv-NDs~e~a~~L~~llk---~~~~~ 312 (373)
T PRK14459 237 PVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDI-NDQPWRADLLGKKLH---GRGGG 312 (373)
T ss_pred CeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHh---hccCC
Confidence 4 799999999999998654 4689999999966554 6788755 4688887 788887666665553 232
Q ss_pred CCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHH
Q 008466 329 ADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARI 369 (564)
Q Consensus 329 pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~ 369 (564)
+-+|.+-|+.+.+|.+ |+.++.+...+....+
T Consensus 313 ~~~VNLIpyNp~~~~~---------y~~~~~~~~~~F~~~L 344 (373)
T PRK14459 313 WVHVNLIPLNPTPGSK---------WTASPPEVEREFVRRL 344 (373)
T ss_pred CeEEEEEccCCCCCCC---------CcCCCHHHHHHHHHHH
Confidence 5678888888877763 4556666555544433
|
|
| >PRK09831 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.1e-07 Score=83.33 Aligned_cols=72 Identities=10% Similarity=0.212 Sum_probs=55.0
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+++.+++ +.+|||+.+.. . .++ .+-|.++ +||+|||++||+.+++.+++
T Consensus 55 ~~v~~~~---~~iiG~~~~~~-------------~----~i~----~~~v~p~----~~g~GiG~~Ll~~~~~~~~~--- 103 (147)
T PRK09831 55 VRVAVIN---AQPVGFITCIE-------------H----YID----MLFVDPE----YTRRGVASALLKPLIKSESE--- 103 (147)
T ss_pred eEEEEEC---CEEEEEEEehh-------------c----eee----eEEECHH----HcCCCHHHHHHHHHHHHhhh---
Confidence 5666555 88999998741 0 011 1226766 99999999999999998764
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+.+.++..|.+||+|+||+.+|.
T Consensus 104 ---l~v~~~~~a~~~Y~k~Gf~~~g~ 126 (147)
T PRK09831 104 ---LTVDASITAKPFFERYGFQTVKQ 126 (147)
T ss_pred ---eEeecchhhHHHHHHCCCEEeec
Confidence 46667788999999999999885
|
|
| >PHA01807 hypothetical protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.8e-07 Score=83.01 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=58.5
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
...|+++++ +.+|||+.+.... ..|..++ -+++ +| |.++ |||+|||++||+.++++|++
T Consensus 53 ~~~lva~~d---g~lvG~~~l~~~~-~~~~~~i-------~~l~~lY-----V~pe----~RG~GiG~~Ll~~~~~~Ar~ 112 (153)
T PHA01807 53 RTELLVFRD---GKLAGIAVLVFED-DPHVGPC-------LGVQWQY-----VLPE----YRNAGVAREFLRELIRLAGE 112 (153)
T ss_pred ceEEEEEEC---CEEEEEEEEEcCC-Ccceeee-------ccceeEE-----ECHH----HcCCCHHHHHHHHHHHHHHH
Confidence 445777765 8899999997553 2222111 1222 34 7776 99999999999999999999
Q ss_pred cCCCcEEEEec---CCCcHHHHhhC
Q 008466 529 EHRSRKMAVIS---GVGTRHYYRKL 550 (564)
Q Consensus 529 ~~g~~~i~~~s---~~~a~~fY~kl 550 (564)
+|+..|.+.. +..|..||++.
T Consensus 113 -~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 113 -GNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred -CCCCEEEEEecCCcHHHHHHHHhc
Confidence 5999997664 55679999974
|
|
| >PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=78.12 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=58.5
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
.+++.+++ +.|||.+.+-... -.+.+ +.+. .+-..|.|+++ |||+|+|++||+++++.++++
T Consensus 42 ~~~~~~~~---~~ivg~~~~~~~~-----~~~~g-----~~~~~~~i~~v~v~p~----~R~~Gl~~~L~~~~~~~~~~~ 104 (127)
T PF13527_consen 42 RCVVAEDD---GKIVGHVGLIPRR-----LSVGG-----KKFKAAYIGDVAVDPE----YRGRGLGRQLMRALLERARER 104 (127)
T ss_dssp EEEEEEET---TEEEEEEEEEEEE-----EEETT-----EEEEEEEEEEEEE-GG----GTTSSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEC---CEEEEEEEEEEEE-----EEECC-----EEEEEEEEEEEEECHH----HcCCCHHHHHHHHHHHHHHhC
Confidence 56777775 8899999875221 01111 1222 33345556766 999999999999999999995
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCee
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYEL 554 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~ 554 (564)
|+.-+.+.+ ....||+|+||+.
T Consensus 105 -g~~~~~l~~--~~~~~Y~~~G~~~ 126 (127)
T PF13527_consen 105 -GVPFIFLFP--SSPPFYRRFGFEY 126 (127)
T ss_dssp -T-SEEEEE---SSHHHHHHTTEEE
T ss_pred -CCCEEEEec--CChhhhhcCCCEE
Confidence 999887766 4589999999985
|
... |
| >PRK07757 acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=79.97 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=58.9
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+...+ +.+||++.+..... .. -+++ -+.|+++ |||+|+|++||+.++++|++ .|
T Consensus 43 ~~i~~~~---~~lvG~~~l~~~~~---------~~---~~i~----~v~V~p~----~rg~Glg~~Ll~~l~~~a~~-~g 98 (152)
T PRK07757 43 FYVAEEE---GEIVGCCALHILWE---------DL---AEIR----SLAVSED----YRGQGIGRMLVEACLEEARE-LG 98 (152)
T ss_pred EEEEEEC---CEEEEEEEEEeccC---------Cc---eEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHh-CC
Confidence 4555554 78999999975420 11 1232 1336766 99999999999999999998 49
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+.++.+.. .+.+||+|+||+..+.
T Consensus 99 ~~~i~~~~--~~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 99 VKRVFALT--YQPEFFEKLGFREVDK 122 (152)
T ss_pred CCeEEEEe--CcHHHHHHCCCEEccc
Confidence 99885543 4579999999999764
|
|
| >TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=98.26 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=67.5
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
+..+|++.++ +++.+|||+.+.... ..+.....- .++. .+.|+++ |||+|||++||+++++++++
T Consensus 122 ~~~~~vA~~~-~~g~IVG~~~~~~~~-----~~~~d~~~~-~~i~----~l~V~P~----~Rg~GIG~~Ll~~l~e~a~~ 186 (547)
T TIGR03103 122 AITYLVAEDE-ASGAIIGTVMGVDHR-----KAFNDPEHG-SSLW----CLAVDPQ----AAHPGVGEALVRALAEHFQS 186 (547)
T ss_pred CceEEEEEEC-CCCeEEEEEEEEecc-----ccccCCCCC-eEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH
Confidence 3456666543 457899999764211 111110100 1122 1337776 99999999999999999999
Q ss_pred cCCCcEEEEe---cCCCcHHHHhhCCCeeeCceEeee
Q 008466 529 EHRSRKMAVI---SGVGTRHYYRKLGYELEGPYMVKY 562 (564)
Q Consensus 529 ~~g~~~i~~~---s~~~a~~fY~klGy~~~g~~m~K~ 562 (564)
.|+.+|.+. +|..|.+||+|+||+..+.|..+.
T Consensus 187 -~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~~d 222 (547)
T TIGR03103 187 -RGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFALKR 222 (547)
T ss_pred -CCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEEec
Confidence 599998653 567899999999999988877653
|
Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein. |
| >TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=81.94 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=59.9
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.++... +++.+|||+.+...... . . +.+...+.|.++ |||+|||++||+.++++|+. .+
T Consensus 41 ~~v~~~--~~~~ivG~~~~~~~~~~------~------~--~~~i~~l~V~p~----~rg~GiG~~L~~~l~~~a~~-~~ 99 (157)
T TIGR02406 41 SIVAES--EGGEIVGFVSGYLRPDR------P------D--VLFVWQVAVDPR----ARGKGLARRLLEALLERVAC-ER 99 (157)
T ss_pred EEEEEc--CCCeEEEEEEEEecCCC------C------C--eEEEEEEEEChH----hccCcHHHHHHHHHHHHHHh-CC
Confidence 455443 23689999876432200 0 0 122223447777 99999999999999999998 48
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
..+|.+. +|..|+.||+|+||+..+.
T Consensus 100 ~~~i~~~v~~~N~~a~~ly~k~G~~~~~~ 128 (157)
T TIGR02406 100 VRHLETTITPDNQASRALFKALARRRGVH 128 (157)
T ss_pred CCEEEEEEcCCCHHHHHHHHHhCcccCCC
Confidence 8888654 5778899999999987654
|
This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase. |
| >PRK13688 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-06 Score=81.18 Aligned_cols=91 Identities=24% Similarity=0.289 Sum_probs=57.4
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.+..+|+.+++ +.+||++.+.... .....-+.... -.-++| .+.|+++ |||||||++||+.+ +
T Consensus 43 ~~~~~~~~~~~---~~~VG~~~l~~~d-g~~~~~~~~~~-~~~~L~----~l~V~p~----~rgkGiG~~Ll~~a----~ 105 (156)
T PRK13688 43 SESPFYGIYYG---DSLVARMSLYKKG-GVEEPYFEDTQ-DYLELW----KLEVLPK----YQNRGYGEMLVDFA----K 105 (156)
T ss_pred CCCCEEEEEEC---CEEEEEEEEEecC-CcccccccCCC-CeEEEE----EEEECHH----HcCCCHHHHHHHHH----H
Confidence 45667777776 7889999886432 11111111000 011233 1236766 99999999999865 4
Q ss_pred hcCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+. ++. +.+.++..|.+||+|+||+..+.
T Consensus 106 ~~-~~~-~~~~~~~~a~~FY~k~GF~~~~~ 133 (156)
T PRK13688 106 SF-QLP-IKTIARNKSKDFWLKLGFTPVEY 133 (156)
T ss_pred Hh-CCe-EEEEeccchHHHHHhCCCEEeEE
Confidence 42 443 55666778999999999988764
|
|
| >PLN02825 amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-06 Score=95.25 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=61.1
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
+++..+| +.+||++.+..-. . .. .-|++ +| |+++ |||+|+|++||+++|++|++ +
T Consensus 409 f~V~e~D---g~IVG~aal~~~~-~-------~~---~aEI~~la-----V~P~----yRGkGiG~~LL~~le~~Ar~-~ 464 (515)
T PLN02825 409 FVVVERE---GSIIACAALFPFF-E-------EK---CGEVAAIA-----VSPE----CRGQGQGDKLLDYIEKKAAS-L 464 (515)
T ss_pred EEEEEEC---CEEEEEEEEEeec-C-------CC---cEEEEEEE-----ECHH----HcCCCHHHHHHHHHHHHHHH-C
Confidence 4555555 7899999875211 1 01 12444 44 8877 99999999999999999999 5
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeC
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
|+++|.+.+ ..+.+||+|+||+..+
T Consensus 465 G~~~L~Llt-t~a~~fY~k~GF~~~~ 489 (515)
T PLN02825 465 GLEKLFLLT-TRTADWFVRRGFSECS 489 (515)
T ss_pred CCCEEEEEe-CcHHHHHHHCCCEEeC
Confidence 999997765 5689999999999977
|
|
| >PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00012 Score=77.16 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=99.8
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCe
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTR 259 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~r 259 (564)
+..| ||| |.|+ ++.+.+.+.++.+.+... +. -....+||+|+- +.+. +..+.+..-..
T Consensus 149 i~nIvfmGmGEPL-~N~d~vi~al~~l~~~~g--~~--------------~s~r~ItVsT~G--~~~~-i~~l~~~~~~~ 208 (345)
T PRK14466 149 LTNLVFMGMGEPL-DNLDEVLKALEILTAPYG--YG--------------WSPKRITVSTVG--LKKG-LKRFLEESECH 208 (345)
T ss_pred CCeEEEeeeCcCc-ccHHHHHHHHHHHhhccc--cC--------------cCCceEEEEcCC--CchH-HHHHhhccCcE
Confidence 5555 899 9998 455554444554433211 00 122478999865 2222 33333323357
Q ss_pred EEEccCCCCHHHHHhcCC---CCCHHHHHHHHHHHHH-cCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEE
Q 008466 260 LEIGVQSTYEDVARDTNR---GHTVAAVADCFCLAKD-AGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLK 333 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~R---ght~~~~~~ai~~lr~-~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~ 333 (564)
+.+.+-|.+++..+.+.+ .++.+++.++++...+ .|=++. .-||-|+ +++.++..+-.+.+. .+ +.+|.
T Consensus 209 LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gv-ND~~e~a~~L~~ll~---~~-~~~VN 283 (345)
T PRK14466 209 LAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGL-NDSLKHAKELVKLLR---GI-DCRVN 283 (345)
T ss_pred EEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHc---CC-CceEE
Confidence 889999999999998775 4788999999988544 333444 5677777 888887766665553 33 47899
Q ss_pred EeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 334 iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
+.|+.+.+|.+ |++++.+...+....+..
T Consensus 284 LIp~Np~~~~~---------~~~~s~~~~~~F~~~L~~ 312 (345)
T PRK14466 284 LIRFHAIPGVD---------LEGSDMARMEAFRDYLTS 312 (345)
T ss_pred EEecCCCCCCC---------CcCCCHHHHHHHHHHHHH
Confidence 99999888853 566777665555443333
|
|
| >PRK15130 spermidine N1-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-06 Score=82.18 Aligned_cols=84 Identities=25% Similarity=0.345 Sum_probs=62.3
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.|+...+ +.+||++.+..... .. .. -+++.+ |.+. |||+|+|+++++.+.+++.++.|
T Consensus 59 ~~~i~~~---g~~iG~~~~~~~~~------~~-~~---~~~~~~-----v~~~----~~g~G~g~~l~~~l~~~~~~~~~ 116 (186)
T PRK15130 59 RFVVECD---GEKAGLVELVEINH------VH-RR---AEFQII-----ISPE----YQGKGLATRAAKLAMDYGFTVLN 116 (186)
T ss_pred EEEEEEC---CEEEEEEEEEeecC------CC-Ce---EEEEEE-----ECHH----HcCCCHHHHHHHHHHHHHhhcCC
Confidence 4555543 78999998864320 11 11 134443 6655 99999999999999999987579
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
..+|.+. +|..+++||+|+||+.+|.
T Consensus 117 ~~rv~~~v~~~N~~s~~~yek~GF~~~~~ 145 (186)
T PRK15130 117 LYKLYLIVDKENEKAIHIYRKLGFEVEGE 145 (186)
T ss_pred ceEEEEEEccCCHHHHHHHHHCCCEEEEE
Confidence 9998654 5778999999999999874
|
|
| >PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=97.91 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=62.6
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+..++ +.+|||+.+.... .+. -++| .+.|+++ |||||||++||++++++|++ .
T Consensus 504 ~~~Va~~~---g~IVG~~~l~~~~---------~~~---~~I~----~i~V~P~----~rGkGIGk~Ll~~l~~~ak~-~ 559 (614)
T PRK12308 504 SFAVAEHH---GEVTGCASLYIYD---------SGL---AEIR----SLGVEAG----WQVQGQGSALVQYLVEKARQ-M 559 (614)
T ss_pred cEEEEEEC---CEEEEEEEEEEcC---------CCe---EEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-C
Confidence 45666555 7899999987542 011 1233 1237777 99999999999999999999 5
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCceE
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGPYM 559 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~~m 559 (564)
|+++|.+.+ .+..||+|+||+..+..+
T Consensus 560 g~~~i~l~~--~a~~FYek~GF~~~~~~~ 586 (614)
T PRK12308 560 AIKKVFVLT--RVPEFFMKQGFSPTSKSL 586 (614)
T ss_pred CCCEEEEee--CcHHHHHHCCCEECCccc
Confidence 999987754 468999999999988544
|
|
| >PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-06 Score=79.52 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=55.8
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe---
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI--- 538 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~--- 538 (564)
+.+||++.+.... +.. ...++ .|+++ |||+|+|+.||+.+++++++ .|+.++.+.
T Consensus 49 ~~~vG~~~~~~~~----------~~~--~~~~i-----~v~~~----~rg~G~g~~ll~~~~~~~~~-~~~~~~~~~~~~ 106 (146)
T PRK09491 49 GQMAAFAITQVVL----------DEA--TLFNI-----AVDPD----YQRQGLGRALLEHLIDELEK-RGVATLWLEVRA 106 (146)
T ss_pred CeEEEEEEEEeec----------Cce--EEEEE-----EECHH----HccCCHHHHHHHHHHHHHHH-CCCcEEEEEEcc
Confidence 7889999886432 111 11122 26665 99999999999999999988 599987653
Q ss_pred cCCCcHHHHhhCCCeeeC
Q 008466 539 SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 539 s~~~a~~fY~klGy~~~g 556 (564)
.|..+..||+|+||+..+
T Consensus 107 ~N~~a~~~y~k~Gf~~~~ 124 (146)
T PRK09491 107 SNAAAIALYESLGFNEVT 124 (146)
T ss_pred CCHHHHHHHHHcCCEEee
Confidence 467889999999999877
|
|
| >PRK13758 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.5e-05 Score=80.73 Aligned_cols=131 Identities=8% Similarity=-0.009 Sum_probs=92.1
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEE
Q 008466 182 VEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLE 261 (564)
Q Consensus 182 ve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvs 261 (564)
+...|.||.|+..|.+.+.++++.+++.-.. ...+.+++.|+-..++++.++.|.+.|+ .|+
T Consensus 59 ~~i~~~GGEPll~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~ 120 (370)
T PRK13758 59 CSFAFQGGEPTLAGLEFFEELMELQRKHNYK-----------------NLKIYNSLQTNGTLIDESWAKFLSENKF-LVG 120 (370)
T ss_pred eEEEEECCccccCChHHHHHHHHHHHHhccC-----------------CCeEEEEEEecCEecCHHHHHHHHHcCc-eEE
Confidence 3444889999999877777777776653210 1124578999999899999999999997 899
Q ss_pred EccCCCCHHHHHhcCC----CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 262 IGVQSTYEDVARDTNR----GHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 262 iGvQS~~d~vL~~i~R----ght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
|.+.+. +++.+.+.+ ..+.+.+.++++.+++.|+++.+-+.+.- .+.+++.+.++.+. .++++.+.+.+
T Consensus 121 iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~~v~~--~n~~~l~~i~~~~~---~~g~~~~~~~~ 193 (370)
T PRK13758 121 LSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTS--NTARHVNKIYKYFK---EKDFKFLQFIN 193 (370)
T ss_pred EeecCC-HHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEEEecc--ccccCHHHHHHHHH---HcCCCeEeeee
Confidence 999997 556555542 45789999999999999988766555542 24444444555544 35667665544
|
|
| >PRK05279 N-acetylglutamate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=93.51 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=60.7
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+.++| +.+||++.+..... . .. -+++ .+.|+++ |||+|+|++||++++++|++ +|
T Consensus 336 ~~va~~d---g~iVG~~~~~~~~~-~-------~~---~~I~----~l~V~p~----~Rg~GiG~~Ll~~l~~~a~~-~g 392 (441)
T PRK05279 336 FTVIERD---GLIIGCAALYPFPE-E-------KM---GEMA----CLAVHPD----YRGSGRGERLLKRIEQRARQ-LG 392 (441)
T ss_pred EEEEEEC---CEEEEEEEEEEcCC-C-------Ce---EEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-cC
Confidence 4555544 78999998764321 0 01 1222 1337776 99999999999999999999 59
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+..+.+.+ ..|.+||+|+||+..|.
T Consensus 393 ~~~l~l~~-~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 393 LKRLFVLT-TRTAHWFLERGFVPVDV 417 (441)
T ss_pred CCEEEEec-chHHHHHHHCcCEECCh
Confidence 99987654 56899999999999874
|
|
| >TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=89.44 Aligned_cols=86 Identities=21% Similarity=0.260 Sum_probs=61.4
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+++++ .++.+|||+.+...... + ...++|. +.|+++ |||||||+.||..+.+++++ .|
T Consensus 200 ~~~a~~~-~~~~~vG~~~~~~~~~~---~---------~~~~i~~--~~V~p~----~rg~GiG~~ll~~~~~~~~~-~g 259 (292)
T TIGR03448 200 LFLAFDD-APGELLGFHWTKVHPDE---P---------ALGEVYV--VGVDPA----AQGRGLGDALTLIGLHHLAA-RG 259 (292)
T ss_pred eEEEEEC-CCCcEEEEEEEEecCCC---C---------ceeEEEE--EEECHH----HcCCCHHHHHHHHHHHHHHH-CC
Confidence 4666653 34778999765533200 0 0123332 356776 99999999999999999999 49
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+.++.+. .|..|..||+|+||+..+.
T Consensus 260 ~~~v~l~v~~~N~~a~~~y~k~GF~~~~~ 288 (292)
T TIGR03448 260 LPAVMLYVEADNEAAVRTYEKLGFTVAEV 288 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHcCCEEccc
Confidence 9987654 3667899999999998764
|
Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species. |
| >COG0456 RimI Acetyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-06 Score=80.44 Aligned_cols=78 Identities=26% Similarity=0.340 Sum_probs=57.0
Q ss_pred eEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCC-cEEEEe---
Q 008466 463 ILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRS-RKMAVI--- 538 (564)
Q Consensus 463 ~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~-~~i~~~--- 538 (564)
.++||+........++. ..+.|+ ..+.|+++ |||+|||++||+++++.+++. |. ..+.+.
T Consensus 72 ~~~G~~~~~~~~~~~~~---------~~~~~i--~~iaV~p~----~r~~Gig~~Ll~~~~~~~~~~-~~~~~~~L~V~~ 135 (177)
T COG0456 72 KVVGFLLVRVVDGRPSA---------DHEGHI--YNLAVDPE----YRGRGIGRALLDEALERLRER-GLADKIVLEVRE 135 (177)
T ss_pred ceeEEEEEEEecCCccc---------cCccEE--EEEEEChH----hhcCCHHHHHHHHHHHHHHhc-CCCceEEEEEec
Confidence 47999998743211111 123343 35566776 999999999999999999984 76 666443
Q ss_pred cCCCcHHHHhhCCCeeeC
Q 008466 539 SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 539 s~~~a~~fY~klGy~~~g 556 (564)
+|..|..||+|+||+..+
T Consensus 136 ~N~~Ai~lY~~~GF~~~~ 153 (177)
T COG0456 136 SNEAAIGLYRKLGFEVVK 153 (177)
T ss_pred CChHHHHHHHHcCCEEEe
Confidence 688899999999999865
|
|
| >COG2153 ElaA Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-06 Score=78.30 Aligned_cols=90 Identities=22% Similarity=0.270 Sum_probs=68.3
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
+.+-|++-+.. ++.|++++||-.+...... -+-|.++ |+.+ +||+|+|++||+.|-+.+.
T Consensus 47 ~~~~Hl~~~~~--~g~LvAyaRLl~~~~~~~~-------------~~iGRV~-v~~~----~RG~glG~~Lm~~AL~~~~ 106 (155)
T COG2153 47 GDTRHLLGWTP--DGELVAYARLLPPGAEYEE-------------VSIGRVI-VSPA----ARGQGLGQQLMEKALETAG 106 (155)
T ss_pred cccceEEEEcC--CCeEEEEEecCCCCCCcCc-------------eeeeeEE-ECHh----hhccchhHHHHHHHHHHHH
Confidence 34567777772 3899999999755411100 1234444 6665 9999999999999999999
Q ss_pred hcCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+.+--+.+.+.+|...+.||.+.||...+.
T Consensus 107 ~~~p~~~v~l~AQahLq~fYa~~GFv~~~e 136 (155)
T COG2153 107 REWPDKPVYLGAQAHLQDFYASFGFVRVGE 136 (155)
T ss_pred hhCCCCCeEEehHHHHHHHHHHhCcEEcCc
Confidence 864456689999999999999999999884
|
|
| >TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.3e-06 Score=91.19 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=60.7
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
+++.+++ +.++|++.+.... .. .. -+++ +| |+++ |||+|+|++||++++++|++ +
T Consensus 324 ~~V~~~d---g~iVG~~~~~~~~-~~-------~~---~~I~~l~-----V~p~----~Rg~GiG~~Ll~~l~~~A~~-~ 379 (429)
T TIGR01890 324 FSIIEHD---GNIIGCAALYPYA-EE-------DC---GEMACLA-----VSPE----YQDGGRGERLLAHIEDRARQ-M 379 (429)
T ss_pred EEEEEEC---CEEEEEEEEEecC-CC-------Ce---EEEEEEE-----ECHH----HcCCCHHHHHHHHHHHHHHH-c
Confidence 3555444 7899999987532 10 01 2333 33 7777 99999999999999999999 5
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
|+.++.+.+ ..+.+||+|+||+..|.
T Consensus 380 G~~~l~v~~-~~a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 380 GISRLFVLT-TRTGHWFRERGFQTASV 405 (429)
T ss_pred CCCEEEEee-cchHHHHHHCCCEECCh
Confidence 999986654 35789999999999874
|
This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate. |
| >COG3153 Predicted acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.5e-06 Score=79.27 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=61.3
Q ss_pred EEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCC
Q 008466 453 FLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRS 532 (564)
Q Consensus 453 fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~ 532 (564)
-+|++-.+++.+||.+++.--. +.+ --...+..|... |... |||||||++||..+++.|+.. |+
T Consensus 46 ~LslVA~d~g~vvG~Il~s~v~-------~~g---~~~~~~~LaPLa-V~p~----~qg~GIG~~Lvr~~le~a~~~-G~ 109 (171)
T COG3153 46 TLSLVAEDDGEVVGHILFSPVT-------VGG---EELGWLGLAPLA-VDPE----YQGQGIGSALVREGLEALRLA-GA 109 (171)
T ss_pred ceeEEEeeCCEEEEEEEEeEEE-------ecC---cccceEEEEeEE-Echh----hcCCcHHHHHHHHHHHHHHHC-CC
Confidence 3444444448899999986322 111 012234433332 5555 999999999999999999994 99
Q ss_pred cEEEEecCCCcHHHHhhCCCeeeC
Q 008466 533 RKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 533 ~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
..+.+ .+...||.|+||+...
T Consensus 110 ~~v~v---lGdp~YY~rfGF~~~~ 130 (171)
T COG3153 110 SAVVV---LGDPTYYSRFGFEPAA 130 (171)
T ss_pred CEEEE---ecCcccccccCcEEcc
Confidence 99988 7889999999999865
|
|
| >COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.2e-05 Score=79.63 Aligned_cols=163 Identities=17% Similarity=0.206 Sum_probs=115.3
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-----eCCCCCHHHHHHHHHcC-
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-----RPDYCLGPHLRQMLSYG- 256 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-----rPd~i~~e~L~~L~~~G- 256 (564)
+.|+.||.|.+++...++++++.|.+ + +.+..+.|.| .|..+|++.++.|.+.+
T Consensus 161 eVllSGGDPL~ls~~~L~~ll~~L~~-I-------------------pHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~ 220 (369)
T COG1509 161 EVLLSGGDPLSLSDKKLEWLLKRLRA-I-------------------PHVKIIRIGTRLPVVLPQRITDELCEILGKSRK 220 (369)
T ss_pred eEEecCCCccccCHHHHHHHHHHHhc-C-------------------CceeEEEeecccceechhhccHHHHHHHhccCc
Confidence 56689999999999999999999874 2 3445667765 57788988888888854
Q ss_pred CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 257 CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 257 ~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
-.++..=+.+.++= -.++.+|+++++++|+.+. +-|+-|. +++++.+.+-++.++. .++-=--+
T Consensus 221 ~v~~~tH~NHp~Ei----------t~e~~~A~~~L~~aGv~l~NQsVLLrGV-ND~~evl~~L~~~L~~---~gV~PYYl 286 (369)
T COG1509 221 PVWLVTHFNHPNEI----------TPEAREACAKLRDAGVPLLNQSVLLRGV-NDDPEVLKELSRALFD---AGVKPYYL 286 (369)
T ss_pred eEEEEcccCChhhc----------CHHHHHHHHHHHHcCceeecchheeccc-CCCHHHHHHHHHHHHH---cCCcceEE
Confidence 23443333222211 1578899999999999865 4688888 8899887777777774 33333345
Q ss_pred eeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChh
Q 008466 335 YPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMP 389 (564)
Q Consensus 335 y~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~ 389 (564)
|.+-+.+|+.=+ . .+.++..+++......++-+..- ....|+|..
T Consensus 287 ~~~D~~~G~~hf--------r-~~i~~~~~i~~~lr~~~SG~~~P-~~v~d~pgg 331 (369)
T COG1509 287 HQLDLVQGAAHF--------R-VPIAEGLQIVEELRGRTSGYAVP-TLVVDIPGG 331 (369)
T ss_pred eccCccCCccce--------e-ccHHHHHHHHHHHHHhCCCcccc-eeEEecCCC
Confidence 677778887532 2 67888999999888888654332 256676653
|
|
| >KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-06 Score=78.65 Aligned_cols=101 Identities=21% Similarity=0.269 Sum_probs=77.6
Q ss_pred eeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecc--cccccCCCchhhhhcCHHHHHHHHH
Q 008466 445 VANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGT--AVPVHGREADKLQHQGYGTLLMEEA 522 (564)
Q Consensus 445 ~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~--~~~v~~~~~~~~q~~GiG~~Lm~~a 522 (564)
..++.|-+.+--||.+.+.+||.-.|-+-- - ++|+.-.-|- .|-|+.+ +||+++|+.|++.+
T Consensus 47 k~~~~~Y~i~Vied~~s~~vigtatL~IE~--K----------fIh~~g~rGhiEDVVV~~~----~rgk~LGkllv~~L 110 (150)
T KOG3396|consen 47 KKSGDWYYIVVIEDKESEKVIGTATLFIER--K----------FIHGCGSRGHIEDVVVDSE----YRGKQLGKLLVETL 110 (150)
T ss_pred HhcCCcEEEEEEEeCCcCeEEEEEEEEEeh--h----------hhhcccccCceeEEEeChh----hhhhHHhHHHHHHH
Confidence 445666667778998889999998887542 1 1122111121 2335655 99999999999999
Q ss_pred HHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCceEeee
Q 008466 523 ERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKY 562 (564)
Q Consensus 523 E~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~ 562 (564)
-.+|+. .|+=++.+.-...-.+||+|+||...+.+|.+.
T Consensus 111 v~l~k~-lgcYKi~LdC~~~nv~FYeKcG~s~~~~~M~~r 149 (150)
T KOG3396|consen 111 VDLAKS-LGCYKIILDCDPKNVKFYEKCGYSNAGNEMTKR 149 (150)
T ss_pred HHHHHh-cCcEEEEEecchhhhhHHHHcCccccchhheec
Confidence 999999 699999998888889999999999999999875
|
|
| >COG2516 Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.4e-05 Score=81.71 Aligned_cols=121 Identities=16% Similarity=0.200 Sum_probs=96.2
Q ss_pred EEEEEE--eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCC----CCCHHHHHHHHHHHHHc-C-CcEEEEEec
Q 008466 233 IGMTIE--TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNR----GHTVAAVADCFCLAKDA-G-FKVVAHMMP 304 (564)
Q Consensus 233 ~eitiE--trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~R----ght~~~~~~ai~~lr~~-G-~~v~~~lI~ 304 (564)
.++|+. .++-+. .+++..++++|...+++++..++.++++.+.| .|+.+...+.+..+-++ | -.+.+|+|+
T Consensus 117 ~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~ihliV 195 (339)
T COG2516 117 DPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGIHLIV 195 (339)
T ss_pred Cceehhhhhhcccc-hHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCcceeEEe
Confidence 456666 566555 89999999999999999999999999998844 38899999999998886 3 347899999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHH
Q 008466 305 DLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDI 365 (564)
Q Consensus 305 GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~ 365 (564)
|+ |++..++.+++..+-. .--.++++.+.|.+||.+.+ ..+++.+.+-++
T Consensus 196 gl-GesD~~~ve~~~~v~~----~g~~v~Lfaf~P~~gt~me~------r~~~pve~Yrk~ 245 (339)
T COG2516 196 GL-GESDKDIVETIKRVRK----RGGIVSLFAFTPLKGTQMEN------RKPPPVERYRKI 245 (339)
T ss_pred cc-CCchHHHHHHHHHHHh----cCceEEEEEecccccccccC------CCCCcHHHHHHH
Confidence 97 8888889999888753 23567888899999998864 345666666544
|
|
| >TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.2e-06 Score=76.05 Aligned_cols=83 Identities=18% Similarity=0.262 Sum_probs=59.4
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+..++ +.+||++.+...... . -..++-+| +.. .+| +|||+.+|+.++++|.+++|
T Consensus 53 ~~~~~~~---g~~vG~~~~~~~~~~------~----~~~~~g~~-----~~~----~~~-~G~g~~~~~~~~~~a~~~~~ 109 (156)
T TIGR03585 53 YWIVCQE---SRPIGVISFTDINLV------H----KSAFWGIY-----ANP----FCK-PGVGSVLEEAALEYAFEHLG 109 (156)
T ss_pred EEEEEEC---CEEEEEEEEEecChh------h----CeEEEEEE-----eCh----hhh-cCchHHHHHHHHHHHHhhCC
Confidence 4555443 889999999744210 0 01122222 333 388 99999999999999987569
Q ss_pred CcEEEE---ecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAV---ISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~---~s~~~a~~fY~klGy~~~g~ 557 (564)
+++|.+ ..|..+++||+|+||+.+|.
T Consensus 110 ~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~ 138 (156)
T TIGR03585 110 LHKLSLEVLEFNNKALKLYEKFGFEREGV 138 (156)
T ss_pred eeEEEEEEeccCHHHHHHHHHcCCeEeee
Confidence 999864 35778999999999999884
|
Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar. |
| >COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.1e-05 Score=77.57 Aligned_cols=141 Identities=15% Similarity=0.075 Sum_probs=105.3
Q ss_pred cEEEEEE-cCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC--CHHHHHHHHHcCC
Q 008466 181 KVEFILM-GGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC--LGPHLRQMLSYGC 257 (564)
Q Consensus 181 kve~I~~-GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i--~~e~L~~L~~~G~ 257 (564)
+...|.+ .-|-...|.+...++.+.+.+.+.. ....++|.|.-+-+ +-+.|..|+.-+-
T Consensus 82 k~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~------------------~~~~v~I~TKS~lv~RDld~l~~~~~~~~ 143 (297)
T COG1533 82 KRTVIAISSVTDPYQPIEKEYRLTRKILEILLK------------------YGFPVSIVTKSALVLRDLDLLLELAERGK 143 (297)
T ss_pred CceEEEEecCCCCCCcchHHHHHHHHHHHHHHH------------------cCCcEEEEECCcchhhhHHHHHhhhhccc
Confidence 3556654 4566677777777888888776642 23468888866522 4456666667777
Q ss_pred CeEEEccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 258 TRLEIGVQSTYEDVARDTNRG-HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
.+|.+-+-|.++++.+.+--+ -+.++-++|++.+.++|+++.+.+-+=+|+.+.+++.+.+....+ .++.++....
T Consensus 144 v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v~v~PIiP~~~d~e~e~~l~~~~~---ag~~~v~~~~ 220 (297)
T COG1533 144 VRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGLFVAPIIPGLNDEELERILEAAAE---AGARVVVYGT 220 (297)
T ss_pred eEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEEEEecccCCCChHHHHHHHHHHHH---cCCCeeEeee
Confidence 899999999988898988865 478999999999999999999999999999998888888877763 4567765555
Q ss_pred eeecCC
Q 008466 337 TLVIRG 342 (564)
Q Consensus 337 l~v~~G 342 (564)
+.+..+
T Consensus 221 l~~~~~ 226 (297)
T COG1533 221 LRLRLD 226 (297)
T ss_pred eeccHH
Confidence 544443
|
|
| >PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.9e-06 Score=79.68 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=62.1
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+....++.+++.+||.+.+...... ..-.-|+.. .|.+. |||||+|+.+++.+.++|.+.+
T Consensus 75 ~~~~~i~~~~~~~~iG~i~l~~~~~~---------~~~~~eig~-----~i~~~----~~G~G~~~ea~~~ll~~~~~~l 136 (194)
T PRK10809 75 AFYFALLDPDEKEIIGVANFSNVVRG---------SFHACYLGY-----SLGQK----WQGQGLMFEALQAAIRYMQRQQ 136 (194)
T ss_pred EEEEEEEECCCCeEEEEEEEEeecCC---------CeeeEEEEE-----EECHH----HcCCCHHHHHHHHHHHHHHhcC
Confidence 33334444445789999998743200 000112222 25554 9999999999999999998756
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
|+++|.+. .|..++++|+|+||+.+|.
T Consensus 137 ~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~ 166 (194)
T PRK10809 137 HMHRIMANYMPHNKRSGDLLARLGFEKEGY 166 (194)
T ss_pred CceEEEEEeeCCCHHHHHHHHHCCCcEEee
Confidence 99998543 4778999999999998873
|
|
| >PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00024 Score=75.43 Aligned_cols=149 Identities=11% Similarity=0.113 Sum_probs=102.0
Q ss_pred EEEE-cCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC-CeEE
Q 008466 184 FILM-GGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC-TRLE 261 (564)
Q Consensus 184 ~I~~-GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~-~rvs 261 (564)
.+|| ||.| .+..+.+.++++.+.+.-.-++ .-..+||+|.-- . +.++.|.+.+. ..+.
T Consensus 164 vVfmGmGEP-L~N~d~v~~~l~~l~~~~Gl~~----------------~~r~itVsTsG~--~-~~i~~L~~~dl~v~La 223 (356)
T PRK14462 164 IVYMGMGEP-LDNLDNVSKAIKIFSENDGLAI----------------SPRRQTISTSGL--A-SKIKKLGEMNLGVQLA 223 (356)
T ss_pred eEEeCCccc-ccCHHHHHHHHHHhcCccCCCc----------------CCCceEEECCCC--h-HHHHHHHhcCCCeEEE
Confidence 3477 6666 5567777777777765311001 112578888542 1 46777777765 6788
Q ss_pred EccCCCCHHHHHhc---CCCCCHHHHHHHHH-HHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEe
Q 008466 262 IGVQSTYEDVARDT---NRGHTVAAVADCFC-LAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 262 iGvQS~~d~vL~~i---~Rght~~~~~~ai~-~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
+.+-+.+++..+.+ ++.++.++++++++ .+++.|-++. .=+|.|+ +++.++..+.++.+- .+ +.+|.+.
T Consensus 224 iSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~Gv-NDs~e~a~~La~llk---~l-~~~VnLI 298 (356)
T PRK14462 224 ISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDV-NDDLKSAKKLVKLLN---GI-KAKVNLI 298 (356)
T ss_pred EECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHh---hc-CcEEEEE
Confidence 88999999999966 56788899999887 4556777765 4688888 888887777666654 34 3588888
Q ss_pred eeeecCCChhHHHHHcCCCCCCCHHHHHHHH
Q 008466 336 PTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 336 ~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~ 366 (564)
|+.+.++.+ |++++.+.+.+..
T Consensus 299 Pyn~~~~~~---------~~~ps~e~i~~f~ 320 (356)
T PRK14462 299 LFNPHEGSK---------FERPSLEDMIKFQ 320 (356)
T ss_pred eCCCCCCCC---------CCCCCHHHHHHHH
Confidence 888777664 4667777655543
|
|
| >PRK10514 putative acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.8e-06 Score=76.02 Aligned_cols=76 Identities=18% Similarity=0.360 Sum_probs=52.7
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+..+ +++.+||++.+.-. + +. ++| |+++ |||+|||++||+++++.+..
T Consensus 51 ~~~~~~--~~~~~iG~~~~~~~-------~-------~~--~~~-----v~p~----~rgkGig~~Ll~~~~~~~~~--- 100 (145)
T PRK10514 51 LWVAVD--ERDQPVGFMLLSGG-------H-------ME--ALF-----VDPD----VRGCGVGRMLVEHALSLHPE--- 100 (145)
T ss_pred eEEEEe--cCCcEEEEEEEecC-------c-------Ee--EEE-----ECHH----hccCCHHHHHHHHHHHhccc---
Confidence 455543 23788999987510 0 11 233 6666 99999999999999987533
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+.-....+|..+.+||+|+||+..|.
T Consensus 101 i~~~v~~~N~~a~~~yek~Gf~~~~~ 126 (145)
T PRK10514 101 LTTDVNEQNEQAVGFYKKMGFKVTGR 126 (145)
T ss_pred cEEEeecCCHHHHHHHHHCCCEEecc
Confidence 22223345778999999999999874
|
|
| >COG0535 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0001 Score=77.14 Aligned_cols=130 Identities=13% Similarity=0.111 Sum_probs=93.1
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEE
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEI 262 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsi 262 (564)
-.++.||.|+.. ..+..+++.+.+. ....+++.|+...++++.++.++++|+..|.+
T Consensus 68 ~v~~~gGEPll~--~d~~ei~~~~~~~---------------------~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~i 124 (347)
T COG0535 68 VVIFTGGEPLLR--PDLLEIVEYARKK---------------------GGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSI 124 (347)
T ss_pred EEEEeCCCcccc--ccHHHHHHHHhhc---------------------CCeEEEEeCCCccCCHHHHHHHHhcCCcEEEE
Confidence 345789999887 3344444444322 12567888887667899999999999999999
Q ss_pred ccCCCCHHH-HHhcCCCCCHHHHHHHHHHHHHcCCcEEE-EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec
Q 008466 263 GVQSTYEDV-ARDTNRGHTVAAVADCFCLAKDAGFKVVA-HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVI 340 (564)
Q Consensus 263 GvQS~~d~v-L~~i~Rght~~~~~~ai~~lr~~G~~v~~-~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~ 340 (564)
.+++.++++ ...-++....+.++++++.+++.|+.+.+ -.|. ..+.+++.+.++.+. .++.+.+.++++.+.
T Consensus 125 Sid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v~---~~n~~~l~~~~~~~~---~~g~~~~~~~~~~~~ 198 (347)
T COG0535 125 SLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTVT---KINYDELPEIADLAA---ELGVDELNVFPLIPV 198 (347)
T ss_pred EecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEEe---cCcHHHHHHHHHHHH---HcCCCEEEEEEEeec
Confidence 999999999 44555567889999999999999997443 3444 344444445555554 356688888888765
Q ss_pred C
Q 008466 341 R 341 (564)
Q Consensus 341 ~ 341 (564)
.
T Consensus 199 g 199 (347)
T COG0535 199 G 199 (347)
T ss_pred c
Confidence 3
|
|
| >COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.6e-05 Score=76.94 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=92.2
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccC
Q 008466 186 LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQ 265 (564)
Q Consensus 186 ~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQ 265 (564)
+.||.|. +-.+..-.+++.+++.|. ...-+-+.|.+...+++.++.|.++|.+-|-+-+-
T Consensus 84 iTGGdPl-~~ieR~~~~ir~LK~efG-------------------~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~ 143 (353)
T COG2108 84 ITGGDPL-LEIERTVEYIRLLKDEFG-------------------EDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP 143 (353)
T ss_pred ccCCChH-HHHHHHHHHHHHHHHhhc-------------------cceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC
Confidence 6788884 344555567777877774 23457788889999999999999999998888773
Q ss_pred CCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChh
Q 008466 266 STYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGL 345 (564)
Q Consensus 266 S~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L 345 (564)
..++ ...+.+++++..+++.|+.+.+- |+.+||+... +.+-++.+- ..+.+.+.+..|.+-.+. +
T Consensus 144 ~~~~---------~~~e~~i~~l~~A~~~g~dvG~E-iPaipg~e~~-i~e~~~~~~---~~~~~FlNiNELE~sE~N-~ 208 (353)
T COG2108 144 RPGS---------KSSEKYIENLKIAKKYGMDVGVE-IPAIPGEEEA-ILEFAKALD---ENGLDFLNINELEFSENN-Y 208 (353)
T ss_pred Cccc---------cccHHHHHHHHHHHHhCccceee-cCCCcchHHH-HHHHHHHHH---hcccceeeeeeeeeccch-H
Confidence 1111 12367889999999998876654 6888886533 444444443 466788999888876543 5
Q ss_pred HHHHHcC
Q 008466 346 YELWKTG 352 (564)
Q Consensus 346 ~~~~~~G 352 (564)
.++..+|
T Consensus 209 ~~l~~~g 215 (353)
T COG2108 209 ENLLERG 215 (353)
T ss_pred HHHHhcC
Confidence 5555554
|
|
| >PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.2e-06 Score=75.03 Aligned_cols=96 Identities=15% Similarity=0.263 Sum_probs=66.0
Q ss_pred eCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHH
Q 008466 446 ANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERI 525 (564)
Q Consensus 446 a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~ 525 (564)
+..+...|+.+.| +.++||+.+--+... .+..+ -.+.+|.+ .+.++ +||+|+|+.+|..+.+.
T Consensus 44 ~~~~~~~~v~~~d---g~~~g~~~~~~~~~~---~~~~~---~~~~~~~~----~~~~~----~rg~G~g~~~~~~~~~~ 106 (152)
T PF13523_consen 44 ADPGHHPYVAEDD---GEPIGYFEIYWPDED---YDADD---GDRGIHRL----IVDPE----YRGQGLGKAMLRALIEF 106 (152)
T ss_dssp HTTTEEEEEEEET---TEEEEEEEEEEGGGS---S---T---TEEEEEEE----ESTGG----GTTSSHHHHHHHHHHHH
T ss_pred ccCCceEEEEEEC---CEEEEEEEEeccccc---ccCCC---CEEEEeee----eechh----hcCCCHHHHHHHHHHHH
Confidence 4566788999888 899999988544311 11121 12445533 13344 99999999999999999
Q ss_pred HHhcCCCcEEEEe---cCCCcHHHHhhCCCeeeCce
Q 008466 526 ALGEHRSRKMAVI---SGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 526 A~~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~~ 558 (564)
+.+..++.+|.+. .|..+.++|+|+||+.+|.+
T Consensus 107 ~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~ 142 (152)
T PF13523_consen 107 LFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEF 142 (152)
T ss_dssp HHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEE
T ss_pred HHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEE
Confidence 9984488888765 36688999999999999864
|
|
| >TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.6e-06 Score=83.27 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=58.0
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+++.+++ +.+|||+.+....+ ....+.+ +.|+++ |||+|||++||+++++.+..
T Consensus 47 ~~~~~~~~---~~~vG~~~~~~~~~---------~~~~~~~-------l~V~p~----~rg~GiG~~Ll~~~~~~~~~-- 101 (292)
T TIGR03448 47 RHLVAVDS---DPIVGYANLVPARG---------TDPAMAE-------LVVHPA----HRRRGIGRALIRALLAKGGG-- 101 (292)
T ss_pred eEEEEEEC---CEEEEEEEEEcCCC---------CcceEEE-------EEECHh----hcCCCHHHHHHHHHHHhccC--
Confidence 45666654 78999999875421 0111122 237777 99999999999999988753
Q ss_pred CCcEEEEe-cCCCcHHHHhhCCCeeeCceEe
Q 008466 531 RSRKMAVI-SGVGTRHYYRKLGYELEGPYMV 560 (564)
Q Consensus 531 g~~~i~~~-s~~~a~~fY~klGy~~~g~~m~ 560 (564)
...+.+. .+..|+.||+++||+..+.++.
T Consensus 102 -~~~~~~~~~n~~a~~fy~~~Gf~~~~~~~~ 131 (292)
T TIGR03448 102 -RLRVWAHGDLPAARALASRLGLVPTRELLQ 131 (292)
T ss_pred -ceEEEEcCCCHHHHHHHHHCCCEEccEEEE
Confidence 2334444 3557899999999998876443
|
Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species. |
| >PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00046 Score=73.12 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=94.3
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcC---
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYG--- 256 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G--- 256 (564)
+..| ||| |.|+ +..+.+.++++.+.+...-.+ ....+|++|.-- - ..+..+....
T Consensus 148 v~~VvfmGmGEPL-~N~d~v~~~l~~l~~~~gl~~----------------~~r~itvsT~G~--~-~~i~~l~~~~~l~ 207 (348)
T PRK14467 148 IRNVVFMGMGEPL-ANYENVRKAVQIMTSPWGLDL----------------SKRRITISTSGI--I-HQIKRMAEDPVMP 207 (348)
T ss_pred CCeEEEEccChhh-cCHHHHHHHHHHHcChhccCc----------------CCCcEEEECCCC--h-hHHHHHHhhcccc
Confidence 4444 888 9985 456666666776643211001 112588887642 1 2344444322
Q ss_pred CCeEEEccCCCCHHHHHhcCC---CCCHHHHHHHHHHHH-HcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCC-CC
Q 008466 257 CTRLEIGVQSTYEDVARDTNR---GHTVAAVADCFCLAK-DAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLF-RA 329 (564)
Q Consensus 257 ~~rvsiGvQS~~d~vL~~i~R---ght~~~~~~ai~~lr-~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l-~p 329 (564)
-..+.+.+-+.+++..+.+-+ .++.+++.++++... +.|-++. .=+|.|+ +++.++..+..+.+- .+ ..
T Consensus 208 ~v~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGv-NDs~e~a~~La~~l~---~l~~~ 283 (348)
T PRK14467 208 EVNLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGV-NDSPEDALRLAQLIG---KNKKK 283 (348)
T ss_pred CeeEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCc-cCCHHHHHHHHHHHh---cCCCc
Confidence 246779999999999997655 467888888876543 5677765 4677777 788888777776664 23 24
Q ss_pred CeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHH
Q 008466 330 DGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDI 365 (564)
Q Consensus 330 d~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~ 365 (564)
-+|.+-|+.+.++.+ |++++.++..+.
T Consensus 284 ~~VnLIPynp~~~~~---------~~~ps~e~i~~f 310 (348)
T PRK14467 284 FKVNLIPFNPDPELP---------YERPELERVYKF 310 (348)
T ss_pred eEEEEecCCCCCCCC---------CCCCCHHHHHHH
Confidence 567777777666553 567777765443
|
|
| >PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00043 Score=73.12 Aligned_cols=151 Identities=13% Similarity=0.101 Sum_probs=96.9
Q ss_pred EEEEEEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHH-HcCCCe
Q 008466 182 VEFILMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQML-SYGCTR 259 (564)
Q Consensus 182 ve~I~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~-~~G~~r 259 (564)
.+.+||| |.|. ++-+.+.+.++.+.+.-. +. -....+||.|.-- .+ .+..|. +..-..
T Consensus 154 ~niVFmGmGEPL-~N~d~V~~~~~~l~~~~~--~~--------------~~~r~itvST~G~--~~-~i~~l~~~~~~~~ 213 (342)
T PRK14465 154 TNVVFMGMGEPM-HNYFNVIRAASILHDPDA--FN--------------LGAKRITISTSGV--VN-GIRRFIENKEPYN 213 (342)
T ss_pred eEEEEEcCCcch-hhHHHHHHHHHHHhChhh--hc--------------CCCCeEEEeCCCc--hH-HHHHHHhhccCce
Confidence 3455899 9995 454555556665543211 00 1224788988663 23 344444 344468
Q ss_pred EEEccCCCCHHHHHhc---CCCCCHHHHHHHHHHH-HHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEE
Q 008466 260 LEIGVQSTYEDVARDT---NRGHTVAAVADCFCLA-KDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLK 333 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i---~Rght~~~~~~ai~~l-r~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~ 333 (564)
+.|.+-+.+++....+ ++.++.+++.++++.. ++.|-++. .-+|.|+ +++.++..+..+.+. .++ .++.
T Consensus 214 LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~Gv-NDs~eda~~L~~ll~---~l~-~kVn 288 (342)
T PRK14465 214 FAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGV-NMGRENANKLVKIAR---SLD-CKIN 288 (342)
T ss_pred EEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCc-cCCHHHHHHHHHHHh---hCC-CcEE
Confidence 9999999999999987 7889999999999955 46677765 4567787 677776655555443 332 4566
Q ss_pred EeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 334 iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
+-|+.+. + ..|++++.++..+...
T Consensus 289 LIPyN~~-~---------~~~~~ps~e~i~~F~~ 312 (342)
T PRK14465 289 VIPLNTE-F---------FGWRRPTDDEVAEFIM 312 (342)
T ss_pred EEccCCC-C---------CCCCCCCHHHHHHHHH
Confidence 6666551 1 3578888877666444
|
|
| >KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1e-05 Score=76.91 Aligned_cols=89 Identities=18% Similarity=0.348 Sum_probs=63.5
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.+..+.++++.. ..+|||...|+.-+. +..++=..|| -|... |||+|||+.||+.+|..|.
T Consensus 90 ~~~~Yi~a~~~~--~~~vgf~~Frf~vd~--------g~~vlYcyEv-----qv~~~----yR~kGiGk~LL~~l~~~a~ 150 (202)
T KOG2488|consen 90 RKLRYICAWNNK--SKLVGFTMFRFTVDT--------GDPVLYCYEV-----QVASA----YRGKGIGKFLLDTLEKLAD 150 (202)
T ss_pred ccceEEEEEcCC--CceeeEEEEEEEccc--------CCeEEEEEEE-----eehhh----hhccChHHHHHHHHHHHHH
Confidence 345667778762 278999999987411 2222222332 24444 9999999999999999998
Q ss_pred hcCCCcEEEE---ecCCCcHHHHhhCCCeeeC
Q 008466 528 GEHRSRKMAV---ISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 528 ~~~g~~~i~~---~s~~~a~~fY~klGy~~~g 556 (564)
.. ..++|.+ ..|.+|.+||+++||....
T Consensus 151 ~~-~~~kVmLTVf~~N~~al~Fy~~~gf~~~~ 181 (202)
T KOG2488|consen 151 SR-HMRKVMLTVFSENIRALGFYHRLGFVVDE 181 (202)
T ss_pred HH-HhhhheeeeecccchhHHHHHHcCcccCC
Confidence 84 6666643 3688999999999998754
|
|
| >PRK14453 chloramphenicol/florfenicol resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00047 Score=73.10 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=98.5
Q ss_pred cEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHH-cCC
Q 008466 181 KVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLS-YGC 257 (564)
Q Consensus 181 kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~-~G~ 257 (564)
++..| ||| |.|+.- .+ +..+++.+.+.-. +. .....+|++|.-- +. .++.+.+ ..-
T Consensus 146 ~i~~IvfmGmGEPLln-~~-v~~~i~~l~~~~~--~~--------------~~~r~itVsT~G~-~~--~i~~l~~~~~~ 204 (347)
T PRK14453 146 RLDSISFMGMGEALAN-PE-LFDALKILTDPNL--FG--------------LSQRRITISTIGI-IP--GIQRLTQEFPQ 204 (347)
T ss_pred CcceEEEeecCCccCC-HH-HHHHHHHHhcccc--cC--------------CCCCcEEEECCCC-ch--hHHHHHhhccC
Confidence 36655 899 999876 43 4555655544110 00 1224589998652 21 2333333 234
Q ss_pred CeEEEccCCCCHHHHHhc---CCCCCHHHHHHHHHHHHH-cCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCC-CCCC
Q 008466 258 TRLEIGVQSTYEDVARDT---NRGHTVAAVADCFCLAKD-AGFKVV--AHMMPDLPNVGVERDLESFREFFESPL-FRAD 330 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i---~Rght~~~~~~ai~~lr~-~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~-l~pd 330 (564)
..+.+-+-+.+++..+.+ ++.+..++++++++.... .|.++. .=+|.|+ +++.++..+.++.+..... -.+.
T Consensus 205 v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~Gv-NDs~e~a~~L~~~lk~l~~~~~~~ 283 (347)
T PRK14453 205 VNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGV-NDSKEHAEAVVGLLRNRGSWEHLY 283 (347)
T ss_pred cCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCC-CCCHHHHHHHHHHHhhccccCCcc
Confidence 677778999999887744 456788888887765444 676654 5789998 7888887777776642110 1156
Q ss_pred eEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHH
Q 008466 331 GLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARI 369 (564)
Q Consensus 331 ~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~ 369 (564)
+|.+-|+.+..+.+ ..|++++.++.......+
T Consensus 284 ~VnLIPyn~~~~~~-------~~~~~ps~e~v~~f~~~L 315 (347)
T PRK14453 284 HVNLIPYNSTDKTP-------FKFQSSSAGQIKQFCSTL 315 (347)
T ss_pred eEEEecCCCCCCCC-------ccCCCCCHHHHHHHHHHH
Confidence 78888888876632 136777777665554433
|
|
| >TIGR01686 FkbH FkbH-like domain | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.7e-06 Score=85.76 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=56.6
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||++.++... +.. +++ .+.|+.+ +||+|+|++||++++++|++ .|+.+|.+.
T Consensus 242 d~givG~~~~~~~~----------~~~---~I~----~l~vs~r----~~grGig~~Ll~~l~~~a~~-~G~~~i~l~v~ 299 (320)
T TIGR01686 242 DSGIIGIFVFEKKE----------GNL---FID----DLCMSCR----ALGRGVETRMLRWLFEQALD-LGNHNARLYYR 299 (320)
T ss_pred CCceEEEEEEEecC----------CcE---EEE----EEEEcHh----HhcCcHHHHHHHHHHHHHHH-cCCCeEEEEEe
Confidence 45679999887442 111 122 2237887 99999999999999999999 599988653
Q ss_pred ---cCCCcHHHHhhCCCeeeC
Q 008466 539 ---SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 539 ---s~~~a~~fY~klGy~~~g 556 (564)
.|..|+.||+|+||+.++
T Consensus 300 ~~~~N~~A~~fY~~~GF~~~~ 320 (320)
T TIGR01686 300 RTERNMPFLSFYEQIGFEDED 320 (320)
T ss_pred eCCCchHHHHHHHHcCCccCC
Confidence 478899999999998653
|
The C-terminal portion of this domain is unique to this family (by BLAST). |
| >KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=73.25 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=66.6
Q ss_pred EEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCC
Q 008466 453 FLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRS 532 (564)
Q Consensus 453 fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~ 532 (564)
++.+.+++++.++||.-.=... . +-+-+--+|-.-+-|.+. ||++|+|++|++.+-+.|.+ .|+
T Consensus 55 ~v~~ie~~~~~~aGf~~yf~~y-s----------tW~~k~~iYleDlyV~e~----yR~kG~Gs~Ll~~va~~A~~-~G~ 118 (163)
T KOG3216|consen 55 LVAAIETSGEVVAGFALYFNNY-S----------TWLGKQGIYLEDLYVREQ----YRGKGIGSKLLKFVAEEADK-LGT 118 (163)
T ss_pred EEEEEecCCCceeEEeeeeccc-c----------cccccceEEEEeeEecch----hcccChHHHHHHHHHHHHHH-cCC
Confidence 4555655678899999876554 1 111111234333447777 99999999999999999999 599
Q ss_pred cEE---EEecCCCcHHHHhhCCCeeeCc
Q 008466 533 RKM---AVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 533 ~~i---~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.++ +++.|..|..||+|.||+..+.
T Consensus 119 ~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 119 PRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred CcEEEEEeccchhHHHHHHHhCccccce
Confidence 997 4668999999999999988664
|
|
| >TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.8e-05 Score=83.24 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=61.4
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+++.+++ +.|||+.++. +. . ++ .+.|.++ |||+|+|++||.+++++|++.
T Consensus 32 ~~vv~~~~---~~lVg~g~l~-------------g~-~---ik----~vaV~~~----~rG~Glg~~L~~~L~~~a~~~- 82 (332)
T TIGR00124 32 IFIAVYED---EEIIGCGGIA-------------GN-V---IK----CVAIDES----LRGEGLALQLMTELENLAYEL- 82 (332)
T ss_pred EEEEEEEC---CEEEEEEEEe-------------cC-E---EE----EEEEcHH----HcCCCHHHHHHHHHHHHHHHc-
Confidence 34455554 7899999884 11 1 22 2447776 999999999999999999995
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeC
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
|+..+.+.+......||+++||...+
T Consensus 83 G~~~l~l~Tk~~~~~fy~klGF~~i~ 108 (332)
T TIGR00124 83 GRFHLFIFTKPEYAALFEYCGFKTLA 108 (332)
T ss_pred CCCEEEEEECchHHHHHHHcCCEEee
Confidence 99999999888888999999998876
|
ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate. |
| >PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.4e-05 Score=74.38 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=57.3
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe---
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI--- 538 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~--- 538 (564)
+.+||++.+....+... . -++ |- -|+++ |||+|||++++..+.++|.+..|+++|.+.
T Consensus 76 ~~~iG~~~l~~~~~~~~-------~---~~i---g~--~i~~~----~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~ 136 (179)
T PRK10151 76 DELIGVLSFNRIEPLNK-------T---AYI---GY--WLDES----HQGQGIISQALQALIHHYAQSGELRRFVIKCRV 136 (179)
T ss_pred CEEEEEEEEEeeccCCC-------c---eEE---EE--EEChh----hcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcC
Confidence 68899999874321111 1 111 11 25665 999999999999999999875689998654
Q ss_pred cCCCcHHHHhhCCCeeeCc
Q 008466 539 SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 s~~~a~~fY~klGy~~~g~ 557 (564)
.|..+..+|+|+||+.+|.
T Consensus 137 ~N~~S~~v~ek~Gf~~~g~ 155 (179)
T PRK10151 137 DNPASNQVALRNGFTLEGC 155 (179)
T ss_pred CCHHHHHHHHHCCCEEEeE
Confidence 5778899999999999884
|
|
| >PRK10562 putative acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.6e-05 Score=71.60 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=52.0
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.|+...+ +.+||++.+... ..++ .+.|+++ |||+|||++||+.+++.+..
T Consensus 50 ~~v~~~~---~~~iG~~~~~~~----------------~~i~----~~~v~~~----~rg~G~g~~ll~~~~~~~~~--- 99 (145)
T PRK10562 50 TWVWEED---GKLLGFVSVLEG----------------RFVG----ALFVAPK----AVRRGIGKALMQHVQQRYPH--- 99 (145)
T ss_pred EEEEEEC---CEEEEEEEEeec----------------cEEE----EEEECHH----HcCCCHHHHHHHHHHhhCCe---
Confidence 4554444 788999988521 1222 1237776 99999999999999774322
Q ss_pred CcEEEE-ecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAV-ISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~-~s~~~a~~fY~klGy~~~g~ 557 (564)
-.+.+ .+|..+..||+|+||+..|.
T Consensus 100 -~~~~v~~~N~~s~~~y~k~Gf~~~~~ 125 (145)
T PRK10562 100 -LSLEVYQKNQRAVNFYHAQGFRIVDS 125 (145)
T ss_pred -EEEEEEcCChHHHHHHHHCCCEEccc
Confidence 12333 35778999999999999884
|
|
| >PRK01346 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.5e-05 Score=81.83 Aligned_cols=89 Identities=21% Similarity=0.176 Sum_probs=61.3
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.++.+++ +.|||++.+.... . .+.+ ...+. ..|-..|.|+.+ |||+|+|++||+++++.+++ +|
T Consensus 49 ~~va~~~---~~lvg~~~~~~~~-~----~~~~-~~~~~--~~~i~~v~V~P~----~RgrGig~~Ll~~~l~~a~~-~g 112 (411)
T PRK01346 49 TLGAFDG---DEVVGTAGAFDLR-L----TVPG-GAVLP--AAGVTAVTVAPT----HRRRGLLTALMREQLRRIRE-RG 112 (411)
T ss_pred eEEEEEC---CEEEEEEEEeccc-c----ccCC-CCccc--eeEEEEEEEChh----hcCCCHHHHHHHHHHHHHHH-CC
Confidence 4667765 7899999875221 0 0100 10001 123334557877 99999999999999999999 59
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCce
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~~ 558 (564)
...+.+.... ..||+|+||+....+
T Consensus 113 ~~~~~L~~~~--~~~Y~r~Gf~~~~~~ 137 (411)
T PRK01346 113 EPVAALTASE--GGIYGRFGYGPATYS 137 (411)
T ss_pred CcEEEEECCc--hhhHhhCCCeeccce
Confidence 9877776543 579999999987753
|
|
| >PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.9e-05 Score=67.59 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=57.8
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
.-+|+.+.. +++.+||++.+....+. .-.-|+- ..|.++ |||+|+|+.++..+.+++.++
T Consensus 56 ~~~~~i~~~-~~~~~iG~i~~~~~~~~----------~~~~eig-----~~i~~~----~~g~G~~~~~~~~~~~~~~~~ 115 (142)
T PF13302_consen 56 YYYFAIEDK-DDGEIIGFIGLYNIDKN----------NNWAEIG-----YWIGPD----YRGKGYGTEALKLLLDWAFEE 115 (142)
T ss_dssp EEEEEEEET-TTTEEEEEEEEEEEETT----------TTEEEEE-----EEEEGG----GTTSSHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEec-cCCceEEEeeeeecccC----------CCccccc-----cchhHH----HHhhhHHHHHHHHHHHHHHhc
Confidence 445555554 44678999999533211 1111222 236665 999999999999999999655
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCe
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYE 553 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~ 553 (564)
+|+.+|... .|..++++++|+||+
T Consensus 116 ~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 116 LGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp STSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 799998543 477889999999996
|
... |
| >PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00073 Score=71.34 Aligned_cols=155 Identities=13% Similarity=0.067 Sum_probs=95.8
Q ss_pred cEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC-
Q 008466 181 KVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC- 257 (564)
Q Consensus 181 kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~- 257 (564)
+++.| ||| |.|+... +..-..++.+.+..+ + +...+|+.|-- ..+.+..|.+.++
T Consensus 141 ~i~nIVfmGmGEPl~N~-d~vl~ai~~l~~~~~--i----------------~~r~itiST~G---~~~~i~rL~~~~v~ 198 (344)
T PRK14464 141 AVKKVVFMGMGEPAHNL-DNVLEAIDLLGTEGG--I----------------GHKNLVFSTVG---DPRVFERLPQQRVK 198 (344)
T ss_pred CCCEEEEeccCcccCCH-HHHHHHHHHhhchhc--C----------------CCceEEEeccc---CchHHHHHHHhcCC
Confidence 36655 899 9998443 444444444433221 1 22457776521 1234566665443
Q ss_pred CeEEEccCCCCHHHHHhcCC---CCCHHHHHHHHHHHH-HcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCe
Q 008466 258 TRLEIGVQSTYEDVARDTNR---GHTVAAVADCFCLAK-DAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADG 331 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~R---ght~~~~~~ai~~lr-~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~ 331 (564)
..+.+.+.+.++++.+.+.+ .++.+++.++++... ..|-++. .-||-|+ +++.++..+-.+.+.. + +-+
T Consensus 199 ~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~EyvLl~GV-NDs~e~a~~L~~~l~~---~-~~~ 273 (344)
T PRK14464 199 PALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQWTLLEGV-NDSDEEMDGIVRLLKG---K-YAV 273 (344)
T ss_pred hHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhc---c-ccc
Confidence 46667889999999887665 568899988887654 3576655 4566677 8898877666655531 2 456
Q ss_pred EEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 332 LKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 332 i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
|.+-|+.+.+|+. |..++.++..+....+..
T Consensus 274 vNLIPyN~v~g~~---------~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 274 MNLIPYNSVDGDA---------YRRPSGERIVAMARYLHR 304 (344)
T ss_pred cceecCCccCCCC---------ccCCCHHHHHHHHHHHHH
Confidence 7777887777764 455776666555544433
|
|
| >TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0003 Score=75.79 Aligned_cols=118 Identities=11% Similarity=0.142 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHH
Q 008466 243 YCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFRE 320 (564)
Q Consensus 243 ~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~ 320 (564)
.++++.++...+++...+.|.|+|.+++..+.|=+.-...++.+.++++.++||.+++ -+++|+- + .+++.+|+..
T Consensus 125 Nl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiN-D-g~~L~~Ti~d 202 (433)
T TIGR03279 125 NLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGIN-D-GKHLERTLRD 202 (433)
T ss_pred CCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcC-C-HHHHHHHHHH
Confidence 4788999999999999999999999999999887777999999999999999999775 5677762 2 3457778877
Q ss_pred HhcCCCCC-CCeEEEeeeeecC--CChhHHHHHcCCC--CCCCHHHHHHHHHHH
Q 008466 321 FFESPLFR-ADGLKIYPTLVIR--GTGLYELWKTGRY--RNYPPEQLVDIVARI 369 (564)
Q Consensus 321 ~~~~~~l~-pd~i~iy~l~v~~--GT~L~~~~~~G~~--~~~~~ee~~~~~~~~ 369 (564)
+.+ ++ -++-.+..+.+.| =|. +++|.+ ++++.+++.+.+..+
T Consensus 203 L~~---~~~~~~P~v~S~avVPVGlTk----~R~~l~~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 203 LAQ---FHDGDWPTVLSVAVVPVGLTR----FRPEEDELTPVTPECARRVIAQV 249 (433)
T ss_pred HHh---hcccCCCceeEEEEEcccccc----CCCCCCCCccCCHHHHHHHHHHH
Confidence 763 31 0111222233333 354 345544 788998887776654
|
Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis. |
| >COG0731 Fe-S oxidoreductases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0008 Score=69.22 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=82.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEc
Q 008466 184 FILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIG 263 (564)
Q Consensus 184 ~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiG 263 (564)
+|.+.|.||..|. +.++++.+++... ...-+-||-. + ++.++.|. -.+-|.+-
T Consensus 84 tis~~GEPTLy~~--L~elI~~~k~~g~---------------------~~tflvTNgs-l-pdv~~~L~--~~dql~~s 136 (296)
T COG0731 84 TISLSGEPTLYPN--LGELIEEIKKRGK---------------------KTTFLVTNGS-L-PDVLEELK--LPDQLYVS 136 (296)
T ss_pred EEeCCCCcccccC--HHHHHHHHHhcCC---------------------ceEEEEeCCC-h-HHHHHHhc--cCCEEEEE
Confidence 3457899998765 6677777765321 1233334443 2 66777776 57999999
Q ss_pred cCCCCHHHHHhcCCCC---CHHHHHHHHHHHHHc--CCcEE-EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 264 VQSTYEDVARDTNRGH---TVAAVADCFCLAKDA--GFKVV-AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 264 vQS~~d~vL~~i~Rgh---t~~~~~~ai~~lr~~--G~~v~-~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
+.+.++++++.+||.| ..+.+.+.++.+++. |-.+. .-++=|++..+ +.+.+-++.+ + ..+||.|-+-..
T Consensus 137 LdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg~N~~~-e~~~~~a~ll-~--~~~Pd~velk~~ 212 (296)
T COG0731 137 LDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKGINDDE-EELEEYAELL-E--RINPDFVELKTY 212 (296)
T ss_pred eccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEeccccCCh-HHHHHHHHHH-H--hcCCCeEEEecC
Confidence 9999999999999986 469999999999996 33333 46666775444 3333333333 2 467998877643
|
|
| >TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0014 Score=67.66 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=102.3
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccC
Q 008466 186 LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQ 265 (564)
Q Consensus 186 ~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQ 265 (564)
|.||.|+. .++.+.++++.+++. ...++++|+-- +..+.++.+.. .++.+.+.+.
T Consensus 131 ~sGGEPll-~~~~l~~l~~~~k~~----------------------g~~~~i~TnG~-~~~~~~~~ll~-~~d~~~isl~ 185 (295)
T TIGR02494 131 LSGGEPLL-QPEFALALLQACHER----------------------GIHTAVETSGF-TPWETIEKVLP-YVDLFLFDIK 185 (295)
T ss_pred eeCcchhc-hHHHHHHHHHHHHHc----------------------CCcEeeeCCCC-CCHHHHHHHHh-hCCEEEEeec
Confidence 78999985 555666677766542 12477888864 55567777765 3678899999
Q ss_pred CCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEE--EecCCCCCCHHHHHHHHHHHhcCCCCC--CCeEEEeeeeecC
Q 008466 266 STYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAH--MMPDLPNVGVERDLESFREFFESPLFR--ADGLKIYPTLVIR 341 (564)
Q Consensus 266 S~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~--lI~GLPget~e~~~~t~~~~~~~~~l~--pd~i~iy~l~v~~ 341 (564)
+.+++..+.+. |.+.+.+++.++.+.+.|+++.+. +|.|+ .++.+++.+.++.+. .++ ++.+.+.++.+..
T Consensus 186 ~~~~~~~~~~~-g~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~-n~~~~ei~~l~~~~~---~~~~~v~~v~l~~~~~~g 260 (295)
T TIGR02494 186 HLDDERHKEVT-GVDNEPILENLEALAAAGKNVVIRIPVIPGF-NDSEENIEAIAAFLR---KLEPGVDEIDLLPYHRLG 260 (295)
T ss_pred cCChHHHHHHh-CCChHHHHHHHHHHHhCCCcEEEEeceeCCc-CCCHHHHHHHHHHHH---HhccCCceEEecCCCchh
Confidence 99999988874 457899999999999999886653 56665 456666666665554 344 5677777777766
Q ss_pred CChhHHH---HHcCCCCCCCHHHHHHHH
Q 008466 342 GTGLYEL---WKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 342 GT~L~~~---~~~G~~~~~~~ee~~~~~ 366 (564)
.++...+ +.-..++.++.+++.++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 288 (295)
T TIGR02494 261 ENKYRQLGREYPDSEIPDPAEEQLLELK 288 (295)
T ss_pred HHHHHHhCCCCccCCCCCCCHHHHHHHH
Confidence 6554432 222234457777666543
|
This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 |
| >PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0041 Score=65.88 Aligned_cols=149 Identities=8% Similarity=0.095 Sum_probs=96.0
Q ss_pred EE-EcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC-CeEEE
Q 008466 185 IL-MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC-TRLEI 262 (564)
Q Consensus 185 I~-~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~-~rvsi 262 (564)
++ +||.|+ +..+.+.++++.+.+...-.+ .-..+||+|.-- .+ .+..+.+.+. ..+.+
T Consensus 153 V~mggGEPL-ln~d~v~~~l~~l~~~~gi~~----------------~~r~itvsTsG~--~p-~i~~l~~~~~~~~lai 212 (342)
T PRK14454 153 VLMGSGEPL-DNYENVMKFLKIVNSPYGLNI----------------GQRHITLSTCGI--VP-KIYELADENLQITLAI 212 (342)
T ss_pred EEECCchhh-cCHHHHHHHHHHHhcccccCc----------------CCCceEEECcCC--hh-HHHHHHhhcccceEEE
Confidence 45 567775 566777777777764211001 112578887442 22 3556666542 34899
Q ss_pred ccCCCCHHHHHhcC---CCCCHHHHHHHHHH-HHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 263 GVQSTYEDVARDTN---RGHTVAAVADCFCL-AKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 263 GvQS~~d~vL~~i~---Rght~~~~~~ai~~-lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
.+-+.+++..+.+- +.+..+++.++++. +.+.|.++. .=+|.|+ +++.++..+..+.+. .+ +-+|.+-|
T Consensus 213 sLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gv-NDs~eda~~La~llk---~l-~~~VnLiP 287 (342)
T PRK14454 213 SLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYALVKGV-NDSKEDAKELGKLLK---GM-LCHVNLIP 287 (342)
T ss_pred ecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCC-CCCHHHHHHHHHHHh---cC-CceEEEEe
Confidence 99999999988665 45677888887765 667788765 4688887 788887776666553 23 35777777
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
+.+..+. .|++++.+++.+...
T Consensus 288 yn~~~~~---------~~~~ps~e~l~~f~~ 309 (342)
T PRK14454 288 VNEVKEN---------GFKKSSKEKIKKFKN 309 (342)
T ss_pred cCCCCCC---------CCCCCCHHHHHHHHH
Confidence 7776554 467788776655443
|
|
| >PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.007 Score=64.78 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=95.8
Q ss_pred cEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCC
Q 008466 181 KVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCT 258 (564)
Q Consensus 181 kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~ 258 (564)
++..| ||| |.|. +..+...++++.+.+...-.+ .-..+||+|.-. . ..+..|.+..-.
T Consensus 157 ~~~nvV~mGmGEPL-~N~d~v~~al~~l~~~~g~~i----------------~~r~itVsTsG~--~-~~i~~l~~~~d~ 216 (372)
T PRK11194 157 PITNVVMMGMGEPL-LNLNNVVPAMEIMLDDFGFGL----------------SKRRVTLSTSGV--V-PALDKLGDMIDV 216 (372)
T ss_pred ccceEEEecCCccc-cCHHHHHHHHHHHhhhhccCc----------------CCCeEEEECCCC--c-hHHHHHHhccCe
Confidence 35554 665 7774 566666666776664321001 112689998552 2 345666665545
Q ss_pred eEEEccCCCCHHHHHhcC---CCCCHHHHHHHHHH-HHHcC---CcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCC
Q 008466 259 RLEIGVQSTYEDVARDTN---RGHTVAAVADCFCL-AKDAG---FKVV--AHMMPDLPNVGVERDLESFREFFESPLFRA 329 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~---Rght~~~~~~ai~~-lr~~G---~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~p 329 (564)
.+.+.+-+.+++..+.+- +.+..+++.+++.. +.+.| -++. .=+|.|+ +++.++..+.++.+- .++
T Consensus 217 ~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGv-NDs~e~a~~La~ll~---~l~- 291 (372)
T PRK11194 217 ALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHV-NDGTEHAHQLAELLK---DTP- 291 (372)
T ss_pred EEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCC-CCCHHHHHHHHHHHh---cCC-
Confidence 677788999999988554 45778888877554 34443 3444 5789998 788888777766654 343
Q ss_pred CeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHH
Q 008466 330 DGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 330 d~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~ 366 (564)
-+|.+-|+.+.+|. .|++++.+++.+..
T Consensus 292 ~~VnLIPYN~~~~~---------~~~~ps~e~v~~f~ 319 (372)
T PRK11194 292 CKINLIPWNPFPGA---------PYGRSSNSRIDRFS 319 (372)
T ss_pred ceEEEecCCCCCCC---------CCCCCCHHHHHHHH
Confidence 47888888877654 34667776655443
|
|
| >COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00034 Score=66.43 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=64.2
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
|-.++++.++ ++.++|+..+. +||+.-. ---+-|+=+| |++. +||+|+|++||+++-+.|+.
T Consensus 51 g~p~~V~~~~--~g~v~G~a~~~-----~fr~r~a--y~~tve~SiY-----v~~~----~~g~GiG~~Ll~~Li~~~~~ 112 (169)
T COG1247 51 GYPVVVAEEE--DGKVLGYASAG-----PFRERPA--YRHTVELSIY-----LDPA----ARGKGLGKKLLQALITEARA 112 (169)
T ss_pred CceEEEEEcC--CCeEEEEEEee-----eccCccc--cceEEEEEEE-----ECcc----cccccHHHHHHHHHHHHHHh
Confidence 3455666553 47899999885 2333221 1122334455 8877 99999999999999999999
Q ss_pred cCCCcEEE--Ee-cCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMA--VI-SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~--~~-s~~~a~~fY~klGy~~~g~ 557 (564)
. |++.+. +. +|.....|-+++||+..|.
T Consensus 113 ~-g~~~lva~I~~~n~aSi~lh~~~GF~~~G~ 143 (169)
T COG1247 113 L-GVRELVAGIESDNLASIALHEKLGFEEVGT 143 (169)
T ss_pred C-CeEEEEEEEcCCCcHhHHHHHHCCCEEecc
Confidence 4 998872 33 3555699999999999884
|
|
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0011 Score=67.37 Aligned_cols=107 Identities=9% Similarity=0.090 Sum_probs=82.7
Q ss_pred EEEEeeCCCCCHHHHHHHHHcC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHH---------------cCCc
Q 008466 235 MTIETRPDYCLGPHLRQMLSYG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKD---------------AGFK 297 (564)
Q Consensus 235 itiEtrPd~i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~---------------~G~~ 297 (564)
|.+-.-|. .+++. .+++| ++||||++|...++-|+.+--..+..++..+...++. --|.
T Consensus 139 IHlK~IPg-as~~l---i~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fa 214 (404)
T COG4277 139 IHLKIIPG-ASPDL---IKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEFA 214 (404)
T ss_pred EEEEecCC-CCHHH---HHHHhhhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCcccc
Confidence 34444554 34444 44555 7999999999999999999888888889888888775 1222
Q ss_pred ---EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHH
Q 008466 298 ---VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYE 347 (564)
Q Consensus 298 ---v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~ 347 (564)
-...||+|--|+|.++++.....+-. .++...|-+..+.|.++|++.-
T Consensus 215 paGQSTQmivGA~~~tD~~Ilsrs~~ly~--~y~lkRVyySaf~Pv~~s~~lp 265 (404)
T COG4277 215 PAGQSTQMIVGADGETDEDILSRSENLYG--RYSLKRVYYSAFSPVPSSPLLP 265 (404)
T ss_pred CCCCceEEEEecCCCchHHHHHHHHHHhh--ccceeEEEeecccccCCCCCCc
Confidence 23689999999999998888777764 6888889888999999998754
|
|
| >COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=68.04 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=56.9
Q ss_pred CeEEEEEEEE-ecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC
Q 008466 462 DILVGLLRLR-KCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540 (564)
Q Consensus 462 ~~lvG~lrlr-~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~ 540 (564)
+.+||.+.|. ++. .+. -|++. +.|+.. |||+|+|..|++.++..|++ .|++++-+.+.
T Consensus 49 g~viGC~aL~~~~~---------~~~---gE~~~----laV~pd----~r~~G~G~~Ll~~~~~~Ar~-~gi~~lf~LTt 107 (153)
T COG1246 49 GKVIGCAALHPVLE---------EDL---GELRS----LAVHPD----YRGSGRGERLLERLLADARE-LGIKELFVLTT 107 (153)
T ss_pred CcEEEEEeecccCc---------cCe---eeEEE----EEECHH----hcCCCcHHHHHHHHHHHHHH-cCCceeeeeec
Confidence 7889999997 232 122 23331 346766 99999999999999999999 69999976654
Q ss_pred CCcHHHHhhCCCeeeC
Q 008466 541 VGTRHYYRKLGYELEG 556 (564)
Q Consensus 541 ~~a~~fY~klGy~~~g 556 (564)
.+.+|++++||+...
T Consensus 108 -~~~~~F~~~GF~~vd 122 (153)
T COG1246 108 -RSPEFFAERGFTRVD 122 (153)
T ss_pred -ccHHHHHHcCCeECc
Confidence 889999999998754
|
|
| >PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00015 Score=61.15 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=39.3
Q ss_pred ccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEE-E-ecCCCcHHHHhhCCCeeeC
Q 008466 501 VHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMA-V-ISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 501 v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~-~-~s~~~a~~fY~klGy~~~g 556 (564)
+.++ |||+|+|+.|+..+-+.+.++ |..-.. + .+|..++.||+|+||+...
T Consensus 29 t~p~----~RrrGlg~~lv~~l~~~~~~~-g~~~~l~v~~~N~~s~~ly~klGf~~~~ 81 (86)
T PF08445_consen 29 TLPE----HRRRGLGSALVAALARELLER-GKTPFLYVDADNEASIRLYEKLGFREIE 81 (86)
T ss_dssp E-GG----GTTSSHHHHHHHHHHHHHHHT-TSEEEEEEETT-HHHHHHHHHCT-EEEE
T ss_pred ECHH----HcCCCHHHHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHcCCEEEE
Confidence 4555 999999999999998888885 777643 3 2577889999999998864
|
This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B. |
| >COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0055 Score=62.48 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=84.8
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..| |.||.|+. -.+++..+++.+++. .+..+++|+-- ++++.++.|.++ ++.+
T Consensus 84 ~~gvt~SGGEP~~-q~e~~~~~~~~ake~----------------------Gl~~~l~TnG~-~~~~~~~~l~~~-~D~v 138 (260)
T COG1180 84 GGGVTFSGGEPTL-QAEFALDLLRAAKER----------------------GLHVALDTNGF-LPPEALEELLPL-LDAV 138 (260)
T ss_pred CCEEEEECCcchh-hHHHHHHHHHHHHHC----------------------CCcEEEEcCCC-CCHHHHHHHHhh-cCeE
Confidence 5666 78999975 445555666665543 23577777764 778888888888 8999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHh
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFF 322 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~ 322 (564)
.+-+=.++++..+.+- +-+.+.+.+.++.+.+.|..+. .=+++|+ +++.+++.+.++++.
T Consensus 139 ~~DlK~~~~~~y~~~t-g~~~~~vl~~~~~l~~~g~~ve~r~lviPg~-~d~~e~i~~i~~~i~ 200 (260)
T COG1180 139 LLDLKAFDDELYRKLT-GADNEPVLENLELLADLGVHVEIRTLVIPGY-NDDEEEIRELAEFIA 200 (260)
T ss_pred EEeeccCChHHHHHHh-CCCcHHHHHHHHHHHcCCCeEEEEEEEECCC-CCCHHHHHHHHHHHH
Confidence 9999999999766665 4444999999999999999865 3577777 667777777776664
|
|
| >KOG3138 consensus Predicted N-acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00011 Score=70.73 Aligned_cols=92 Identities=23% Similarity=0.336 Sum_probs=65.7
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeee---eeecccccccCCCchhhhhcCHHHHHHHHHHHH
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVREL---HVYGTAVPVHGREADKLQHQGYGTLLMEEAERI 525 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~rel---hvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~ 525 (564)
|.-.=+++.+ +..||.++.+.... .....|.. -.|...++|..+ ||++|||++|++.+.+.
T Consensus 54 ~~~~~~A~~~---~~~v~a~~~k~~~~---------~~~~~r~~~~~~~yi~~Lgvl~~----yR~~gIGs~Ll~~~~~~ 117 (187)
T KOG3138|consen 54 GDLTQLAYYN---EIAVGAVACKLIKF---------VQNAKRLFGNRVIYILSLGVLPR----YRNKGIGSKLLEFVKKY 117 (187)
T ss_pred CCHHHhhhhc---cccccceeeeehhh---------hhhhhhhhccceeEEEeecccHH----HHhcchHHHHHHHHHHH
Confidence 3333444444 56788888775431 11111211 267778889988 99999999999999999
Q ss_pred HHhcCCCcEEEE---ecCCCcHHHHhhCCCeeeC
Q 008466 526 ALGEHRSRKMAV---ISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 526 A~~~~g~~~i~~---~s~~~a~~fY~klGy~~~g 556 (564)
+.+.+-++++.+ .+|..|..||++.||+..+
T Consensus 118 ~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~ 151 (187)
T KOG3138|consen 118 CSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVE 151 (187)
T ss_pred HhcccccceEEEEEEeCCCcHHHHHHhcCceEee
Confidence 998633677754 4688999999999999987
|
|
| >KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00094 Score=61.88 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=58.9
Q ss_pred CCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe-
Q 008466 460 RQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI- 538 (564)
Q Consensus 460 ~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~- 538 (564)
.++.+||++-..... +|. .+. .-=|++ .+.|... ||+.|+|++||..+-+.-.+.++.+.+.++
T Consensus 49 ~~gkiVGYvlAkmee-~p~-~~~-------~hGhIt--SlaV~rs----~RrlGla~kLm~qa~rAm~E~~~A~yvsLHV 113 (193)
T KOG3235|consen 49 ENGKIVGYVLAKMEE-DPD-DEP-------PHGHIT--SLAVKRS----YRRLGLAQKLMNQASRAMVEVYEAKYVSLHV 113 (193)
T ss_pred CCCcEEEEeeeehhh-ccc-CCC-------CCCeeE--Eeeehhh----HHHhhHHHHHHHHHHHHHHHhhcceEEEEee
Confidence 568899999776443 110 000 111443 4555655 999999999999988877776677777765
Q ss_pred --cCCCcHHHHh-hCCCeeeC
Q 008466 539 --SGVGTRHYYR-KLGYELEG 556 (564)
Q Consensus 539 --s~~~a~~fY~-klGy~~~g 556 (564)
||-.|.++|+ .+||++.+
T Consensus 114 R~SNraAl~LY~~tl~F~v~e 134 (193)
T KOG3235|consen 114 RKSNRAALHLYKNTLGFVVCE 134 (193)
T ss_pred ecccHHHHHhhhhccceEEee
Confidence 7888999999 99999876
|
|
| >cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0021 Score=48.14 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=41.8
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEE
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAV 537 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~ 537 (564)
+.++|++.+..... . .-.-+++ .+.++++ |||+|+|+++|..+.+++++ .|++++.+
T Consensus 8 ~~~ig~~~~~~~~~-------~---~~~~~l~----~~~v~~~----~~~~g~~~~~~~~~~~~~~~-~~~~~v~~ 64 (65)
T cd04301 8 GEIVGFASLSPDGS-------G---GDTAYIG----DLAVLPE----YRGKGIGSALLEAAEEEARE-RGAKRLRL 64 (65)
T ss_pred CEEEEEEEEEecCC-------C---CccEEEE----EEEECHH----HcCcCHHHHHHHHHHHHHHH-cCCcEEEe
Confidence 78899999986531 0 0112222 2336666 99999999999999999999 59998865
|
NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera |
| >KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0009 Score=61.99 Aligned_cols=88 Identities=23% Similarity=0.243 Sum_probs=65.5
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
.|.|+.-++|. +.|-|++.-+.-. ---+.|..-+++.|..+ ||..|+|+.||+-+|+.....
T Consensus 40 pe~~~~a~~p~-~~imgyimgk~Eg-------------~~~~wh~HvTAltVap~----~Rrl~la~~lm~~led~~d~~ 101 (173)
T KOG3234|consen 40 PEDFIVAEAPT-GEIMGYIMGKVEG-------------KDTEWHGHVTALTVAPD----YRRLGLAAKLMDTLEDVSDVD 101 (173)
T ss_pred hHHhEeccCCC-CceEEEEeeeccc-------------cCcceeeEEEEEEechh----HHHHHHHHHHHHHHHHHHHhh
Confidence 45566666655 5568998765322 12466777778888877 999999999999999999774
Q ss_pred CCCcEE---EEecCCCcHHHHhhCCCeeeC
Q 008466 530 HRSRKM---AVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 530 ~g~~~i---~~~s~~~a~~fY~klGy~~~g 556 (564)
+.-.+ +..+|.-|..||+||||....
T Consensus 102 -~a~fvDLfVr~sN~iAI~mYkkLGY~~YR 130 (173)
T KOG3234|consen 102 -NAYFVDLFVRVSNQIAIDMYKKLGYSVYR 130 (173)
T ss_pred -hhheeeeeeeccchhHHHHHHhcCceEEE
Confidence 44444 334788999999999998865
|
|
| >PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.12 Score=55.00 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=97.7
Q ss_pred CcEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcC-
Q 008466 180 DKVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYG- 256 (564)
Q Consensus 180 ~kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G- 256 (564)
.+|..| ||| |.|. ++-+...+.++.|.+.-. +. -.-..|||.|-- + ...+..|.+-+
T Consensus 167 ~~i~NIVfMGMGEPL-~NydnV~~ai~il~d~~g--~~--------------is~R~ITVST~G--i-vp~I~~la~~~~ 226 (371)
T PRK14461 167 GRVTNLVFMGMGEPF-ANYDRWWQAVERLHDPQG--FN--------------LGARSMTVSTVG--L-VKGIRRLANERL 226 (371)
T ss_pred CceeeEEEEccCCch-hhHHHHHHHHHHhcCccc--cC--------------cCCCceEEEeec--c-hhHHHHHHhccc
Confidence 357666 787 7774 344444444554432210 10 012357888743 2 23566666655
Q ss_pred CCeEEEccCCCCHHHHHh---cCCCCCHHHHHHHHHHHHH-cCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCC--
Q 008466 257 CTRLEIGVQSTYEDVARD---TNRGHTVAAVADCFCLAKD-AGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFR-- 328 (564)
Q Consensus 257 ~~rvsiGvQS~~d~vL~~---i~Rght~~~~~~ai~~lr~-~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~-- 328 (564)
-..+.|.+-+.++++.+. +||.++.+++.+|++.--+ .|=.+.+ -||-|. +++.++..+-.+.+- .+.
T Consensus 227 ~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gv-NDs~e~A~~L~~llk---~~~~~ 302 (371)
T PRK14461 227 PINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGK-NDHPEQAAALARLLR---GEAPP 302 (371)
T ss_pred CceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCC-CCCHHHHHHHHHHHc---CCccc
Confidence 378999999999999885 4789999999999887643 4555554 566666 888887666555442 231
Q ss_pred ---CCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHH
Q 008466 329 ---ADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 329 ---pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~ 366 (564)
+-+|.+-|+.+.+|++ |++++.+...+..
T Consensus 303 ~~l~~~VNLIp~Np~~~~~---------~~~ps~~~i~~F~ 334 (371)
T PRK14461 303 GPLLVHVNLIPWNPVPGTP---------LGRSERERVTTFQ 334 (371)
T ss_pred cCCceEEEEecCCCCCCCC---------CCCCCHHHHHHHH
Confidence 3578888888888885 4556666554433
|
|
| >COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0032 Score=58.87 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=59.0
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||.+.+..... .. ..-..+++.+ +... |+|+|+|+..+..+-++|-+..|+++|...
T Consensus 76 ~~~~iG~~~~~~~~~-----~~---~~~~~~ig~~-----l~~~----~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~ 138 (187)
T COG1670 76 DGELIGVIGLSDIDR-----AA---NGDLAEIGYW-----LDPE----YWGKGYATEALRALLDYAFEELGLHRIEATVD 138 (187)
T ss_pred CCeEEEEEEEEEecc-----cc---ccceEEEEEE-----EChH----HhcCchHHHHHHHHHHHhhhhcCceEEEEEec
Confidence 357899999984431 01 1112334333 3444 999999999999999999887799998543
Q ss_pred -cCCCcHHHHhhCCCeeeCc
Q 008466 539 -SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g~ 557 (564)
.|..+.+.|+|+||+.+|.
T Consensus 139 ~~N~~S~rv~ek~Gf~~eg~ 158 (187)
T COG1670 139 PENEASIRVYEKLGFRLEGE 158 (187)
T ss_pred CCCHHHHHHHHHcCChhhhh
Confidence 4778899999999999984
|
|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.052 Score=53.78 Aligned_cols=125 Identities=18% Similarity=0.290 Sum_probs=93.9
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccC
Q 008466 186 LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQ 265 (564)
Q Consensus 186 ~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQ 265 (564)
|.||.|+.- .+.+..+++.+++. .+...++|+-- .+.+.+..+... ++.+.+-+=
T Consensus 44 ~SGGEPllq-~~fl~~l~~~~k~~----------------------gi~~~leTnG~-~~~~~~~~l~~~-~D~~l~DiK 98 (213)
T PRK10076 44 LSGGEVLMQ-AEFATRFLQRLRLW----------------------GVSCAIETAGD-APASKLLPLAKL-CDEVLFDLK 98 (213)
T ss_pred EeCchHHcC-HHHHHHHHHHHHHc----------------------CCCEEEECCCC-CCHHHHHHHHHh-cCEEEEeec
Confidence 789999865 56666777766542 13477888764 667788877764 899999999
Q ss_pred CCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec
Q 008466 266 STYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVI 340 (564)
Q Consensus 266 S~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~ 340 (564)
+++++..+.+. |.+.+.+.+.++.+.+.|..+. .=+|+|+ .++.+++.+..+++. .++++.+.+.|+.+.
T Consensus 99 ~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~-nd~~e~i~~ia~~l~---~l~~~~~~llpyh~~ 170 (213)
T PRK10076 99 IMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGF-TLSRENMQQALDVLI---PLGIKQIHLLPFHQY 170 (213)
T ss_pred cCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHH---HcCCceEEEecCCcc
Confidence 99999988775 4678999999999999998754 5788887 567777777777765 356666766666654
|
|
| >KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=59.65 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=91.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCC-CHHHHHHHHHcCCCeEEEccCCC
Q 008466 190 TFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYC-LGPHLRQMLSYGCTRLEIGVQST 267 (564)
Q Consensus 190 Tpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i-~~e~L~~L~~~G~~rvsiGvQS~ 267 (564)
.-+-...+.+.+-++.|+..- -++-+|+ -||.- +-+.++.+...|.+-..-+|||.
T Consensus 168 DlpDgGa~HiAkTVq~iK~k~----------------------p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETV 225 (360)
T KOG2672|consen 168 DLPDGGANHIAKTVQKIKEKA----------------------PEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETV 225 (360)
T ss_pred cCcCcchHHHHHHHHHHHhhC----------------------cccchhhcCccccCchHHHHHHHhcCccceecchhhH
Confidence 334455667777777776533 3577886 88855 66889999999999999999997
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 268 YEDVARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 268 ~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
.+=+---=.|.-+..+.+.+++.+++..-.++ ..+|.|| |||.|.+..+++.+. +.++|-+++-.++
T Consensus 226 e~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlgl-getdeei~~tl~dLr---~~~vdv~t~gqym 294 (360)
T KOG2672|consen 226 EELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGL-GETDEEIKQTLKDLR---AADVDVVTFGQYM 294 (360)
T ss_pred HhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhcc-CCCHHHHHHHHHHHH---HcCCcEEeccccc
Confidence 44332233356688999999999999755544 5899999 999999999998886 4667888776554
|
|
| >COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.055 Score=57.81 Aligned_cols=112 Identities=12% Similarity=0.156 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCC-HHHHHHHHHHHhcC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVG-VERDLESFREFFES 324 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget-~e~~~~t~~~~~~~ 324 (564)
.+..+.+.++|++-|++.|+|.++++.+++=|.+..++.++.+++..+.++.+.++++. .||-+ -+++.+|++.+-
T Consensus 125 t~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iVl-~PGvNdge~L~kT~~dL~-- 201 (414)
T COG1625 125 TNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIVL-CPGVNDGEELEKTLEDLE-- 201 (414)
T ss_pred cchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhhheeeEEEE-cCCcCcHHHHHHHHHHHH--
Confidence 44556699999999999999999999999999999999999999999999998875443 34444 555666776664
Q ss_pred CCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHH
Q 008466 325 PLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDI 365 (564)
Q Consensus 325 ~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~ 365 (564)
++++..+.+....+.--|.. ++...+++.++++.++
T Consensus 202 -~~g~~~~~~~~~~pvGlt~~----n~~~i~~~t~~~l~~~ 237 (414)
T COG1625 202 -EWGAHEVILMRVVPVGLTRY----NRPGIRPPTPHELEEF 237 (414)
T ss_pred -HhCcCceeEEEeecceeeec----CCCCCCCCCHHHHHHH
Confidence 46677766664223333432 2334455666655443
|
|
| >TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.025 Score=56.93 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=56.4
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..| |.||.|+..+ .+..|++.+++. ...+++|||-...++ .+.. ++++
T Consensus 73 ~~~V~lTGGEPll~~--~l~~li~~l~~~----------------------g~~v~leTNGtl~~~----~l~~--~d~v 122 (238)
T TIGR03365 73 PLHVSLSGGNPALQK--PLGELIDLGKAK----------------------GYRFALETQGSVWQD----WFRD--LDDL 122 (238)
T ss_pred CCeEEEeCCchhhhH--hHHHHHHHHHHC----------------------CCCEEEECCCCCcHH----HHhh--CCEE
Confidence 4445 7899998763 566777776542 135889998864432 2333 4578
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
.+.+-..+. +.....+...++++.+++ +.++.+.+.++
T Consensus 123 ~vs~K~~~s------g~~~~~~~~~~~ik~l~~-~~~~~vK~Vv~ 160 (238)
T TIGR03365 123 TLSPKPPSS------GMETDWQALDDCIERLDD-GPQTSLKVVVF 160 (238)
T ss_pred EEeCCCCCC------CCCCcHHHHHHHHHHhhh-cCceEEEEEEC
Confidence 787765444 222346777788888887 66777777776
|
This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.081 Score=53.41 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=89.2
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC--CHHHHHHHHHHHHHcCCcEEEEEecCC-CCC
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH--TVAAVADCFCLAKDAGFKVVAHMMPDL-PNV 309 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh--t~~~~~~ai~~lr~~G~~v~~~lI~GL-Pge 309 (564)
..+.+-+++. .+.++.++++|+.+|.+.+-+.+.......+|+. ..+.+.++++.+++.|+.+.+.++.-. |..
T Consensus 67 ~~~~~l~~~~---~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~ 143 (265)
T cd03174 67 VKLQALVRNR---EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKT 143 (265)
T ss_pred cEEEEEccCc---hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCC
Confidence 3455555553 7899999999999999988555433344556654 678999999999999999988886544 347
Q ss_pred CHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 310 GVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 310 t~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+++.+.+.++.+. +++++.|.+-.+ .| ..++++..+++..+...+|.
T Consensus 144 ~~~~l~~~~~~~~---~~g~~~i~l~Dt-------------~G---~~~P~~v~~li~~l~~~~~~ 190 (265)
T cd03174 144 DPEYVLEVAKALE---EAGADEISLKDT-------------VG---LATPEEVAELVKALREALPD 190 (265)
T ss_pred CHHHHHHHHHHHH---HcCCCEEEechh-------------cC---CcCHHHHHHHHHHHHHhCCC
Confidence 8888888888776 567888775433 12 26778888888888888763
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >COG3981 Predicted acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0064 Score=57.40 Aligned_cols=86 Identities=23% Similarity=0.326 Sum_probs=60.0
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
.+|+++.. ++.+||++.+|..-+.....+ .+ | .| .|.++ .|++|||++++.-+-..|++
T Consensus 69 ~~y~~v~~--d~~ivG~i~lRh~Ln~~ll~~-gG--------HIGY----~VrPs----eR~KGYA~emLkl~L~~ar~- 128 (174)
T COG3981 69 STYWAVDE--DGQIVGFINLRHQLNDFLLEE-GG--------HIGY----SVRPS----ERRKGYAKEMLKLALEKARE- 128 (174)
T ss_pred eeEEEEec--CCcEEEEEEeeeecchHHHhc-CC--------cccc----eeChh----hhccCHHHHHHHHHHHHHHH-
Confidence 44666654 478899999997643333222 22 4 33 24444 89999999999999999999
Q ss_pred CCCcEEEEec---CCCcHHHHhhCCCeeeC
Q 008466 530 HRSRKMAVIS---GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 530 ~g~~~i~~~s---~~~a~~fY~klGy~~~g 556 (564)
+|++++.|+. |...+.-=++.|=..+.
T Consensus 129 lgi~~Vlvtcd~dN~ASrkvI~~NGGile~ 158 (174)
T COG3981 129 LGIKKVLVTCDKDNIASRKVIEANGGILEN 158 (174)
T ss_pred cCCCeEEEEeCCCCchhhHHHHhcCCEEeE
Confidence 6999997763 44457777777655544
|
|
| >COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.5 Score=49.93 Aligned_cols=141 Identities=13% Similarity=0.161 Sum_probs=90.8
Q ss_pred CCcEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHH-Hc
Q 008466 179 VDKVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQML-SY 255 (564)
Q Consensus 179 ~~kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~-~~ 255 (564)
..++.-| ||| |.| +++-+....+++.+.... +.+ + ....+|+.|.- +.+ .|..|. +.
T Consensus 150 ~~~i~NVV~MGMGEP-l~N~dnV~~a~~i~~~~~----G~~-----------l-s~R~iTvSTsG--i~~-~I~~l~~~~ 209 (349)
T COG0820 150 GRRISNVVFMGMGEP-LLNLDNVVKALEIINDDE----GLG-----------L-SKRRITVSTSG--IVP-RIRKLADEQ 209 (349)
T ss_pred cceeeeEEEecCCch-hhhHHHHHHHHHhhcCcc----ccc-----------c-cceEEEEecCC--Cch-hHHHHHhhc
Confidence 3456665 777 666 445555555544443211 111 1 12567888754 334 445555 44
Q ss_pred CCCeEEEccCCCCHHHHH---hcCCCCCHHHHHHHHHHHHH-cCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCCC
Q 008466 256 GCTRLEIGVQSTYEDVAR---DTNRGHTVAAVADCFCLAKD-AGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFRA 329 (564)
Q Consensus 256 G~~rvsiGvQS~~d~vL~---~i~Rght~~~~~~ai~~lr~-~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~p 329 (564)
.--.+.|.+.+.+++..+ -+||..+.++..++++.-.+ .|..|.. -|+-|. ++..++..+.++.+ .--+
T Consensus 210 ~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~EY~Ll~~V-ND~~e~A~~L~~ll----~~~~ 284 (349)
T COG0820 210 LGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFEYVLLDGV-NDSLEHAKELAKLL----KGIP 284 (349)
T ss_pred CCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCceEEEEeeecccc-cCCHHHHHHHHHHh----cCCC
Confidence 557899999999999987 46788899999999988665 5666664 567777 55566655554443 2234
Q ss_pred CeEEEeeeeecCCCh
Q 008466 330 DGLKIYPTLVIRGTG 344 (564)
Q Consensus 330 d~i~iy~l~v~~GT~ 344 (564)
-+|.+-|+.+.+|+.
T Consensus 285 ~~VNLIP~Np~~~~~ 299 (349)
T COG0820 285 CKVNLIPYNPVPGSD 299 (349)
T ss_pred ceEEEeecCCCCCCC
Confidence 589999999999987
|
|
| >PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.012 Score=48.75 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=43.9
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCC
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGV 541 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~ 541 (564)
+..+|+|..+.. ...+--.|.+ |.++ +||||+|++||+++-++|+++ |.+-+.+++
T Consensus 8 g~~~a~l~Y~~~------------~~~~~i~hT~-----V~~~----~rGqGia~~L~~~~l~~a~~~-~~kv~p~C~-- 63 (78)
T PF14542_consen 8 GEEIAELTYRED------------GGVIVITHTE-----VPPE----LRGQGIAKKLVEAALDYAREN-GLKVVPTCS-- 63 (78)
T ss_dssp TTEEEEEEEEES------------SSEEEEEEEE-----E-CS----SSTTTHHHHHHHHHHHHHHHT-T-EEEETSH--
T ss_pred CEEEEEEEEEeC------------CCEEEEEEEE-----ECcc----ccCCcHHHHHHHHHHHHHHHC-CCEEEEECH--
Confidence 667888888753 2345556776 6776 999999999999999999995 765543332
Q ss_pred CcHHHHhh
Q 008466 542 GTRHYYRK 549 (564)
Q Consensus 542 ~a~~fY~k 549 (564)
-|..|.+|
T Consensus 64 y~~~~~~~ 71 (78)
T PF14542_consen 64 YVAKYFRR 71 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 23444444
|
|
| >PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0054 Score=54.29 Aligned_cols=45 Identities=20% Similarity=0.171 Sum_probs=26.9
Q ss_pred EEEEcCCCCC-CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHH
Q 008466 184 FILMGGTFMS-LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPH 248 (564)
Q Consensus 184 ~I~~GGTpt~-l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~ 248 (564)
..|.||.|+. ++.+.+.++++.+.+..+ ...++++|+-....+..
T Consensus 51 v~~~GGEPll~~~~~~l~~~i~~~~~~~~--------------------~~~i~i~TNg~~~~~~~ 96 (119)
T PF13394_consen 51 VVFTGGEPLLYLNPEDLIELIEYLKERGP--------------------EIKIRIETNGTLPTEEK 96 (119)
T ss_dssp EEEESSSGGGSTTHHHHHHHHCTSTT-------------------------EEEEEE-STTHHHHH
T ss_pred EEEECCCCccccCHHHHHHHHHHHHhhCC--------------------CceEEEEeCCeeccccc
Confidence 4488999985 566677777766654332 26789999876443433
|
|
| >COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0035 Score=51.29 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=34.4
Q ss_pred cccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCC
Q 008466 500 PVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGY 552 (564)
Q Consensus 500 ~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy 552 (564)
.|++. |||+|+|++|++.++++|+. .|+. .+..+..+|+++||
T Consensus 88 ~v~~~----~rg~Gig~~Ll~~~~~~~~~-~g~~-----~~~~~~~~~~~~~~ 130 (156)
T COG0454 88 YVLPE----YRGKGIGSALLEAALEWARK-RGIS-----LNRLALEVYEKNGF 130 (156)
T ss_pred Eecch----hhccchHHHHHHHHHHHHHH-cCce-----ehHHHHHHHHhcCC
Confidence 36776 99999999999999999999 4876 44556667777666
|
|
| >COG3393 Predicted acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0086 Score=60.28 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=42.3
Q ss_pred hhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--cCCCcHHHHhhCCCeeeCceEe
Q 008466 509 LQHQGYGTLLMEEAERIALGEHRSRKMAVI--SGVGTRHYYRKLGYELEGPYMV 560 (564)
Q Consensus 509 ~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~--s~~~a~~fY~klGy~~~g~~m~ 560 (564)
|||+||++.|+..+-....++ |..-.... .|.-|.+.|+|+||+..|.|+.
T Consensus 213 yR~kGyAt~lva~L~~~lL~e-Gk~~~L~~~~~N~~A~~iY~riGF~~~g~~~~ 265 (268)
T COG3393 213 YRGKGYATALVATLAAKLLAE-GKIPCLFVNSDNPVARRIYQRIGFREIGEFRE 265 (268)
T ss_pred HccccHHHHHHHHHHHHHHhC-CCeeEEEEecCCHHHHHHHHHhCCeecceEEE
Confidence 999999999999987777775 76654333 5778899999999999998764
|
|
| >KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0036 Score=57.84 Aligned_cols=53 Identities=21% Similarity=0.436 Sum_probs=44.2
Q ss_pred cccCCCchhhhhcCHHHHHHHH-HHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 500 PVHGREADKLQHQGYGTLLMEE-AERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 500 ~v~~~~~~~~q~~GiG~~Lm~~-aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.|+.. ||.||+|..|+.. +.....+. -.+++++++.....+||+++||...|+
T Consensus 108 ~Ihpa----~rk~g~a~~Ll~~ylq~l~~q~-i~~r~~Li~h~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 108 AIHPA----FRKQGRAPILLWRYLQHLGSQP-IVRRAALICHDPLVPFYERFGFKAVGP 161 (190)
T ss_pred EecHH----HHhcCcchhHHHHHHHHhhcCc-cccceeeeecCCccchhHhcCceeecc
Confidence 46766 9999999999987 55555553 556889999999999999999999997
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.4 Score=46.55 Aligned_cols=114 Identities=17% Similarity=0.222 Sum_probs=85.3
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
..+++-..|...+.+.++...+.|++.|.+..- . ...+.+.+.++.+|+.|+.+...+|... .-+++
T Consensus 77 ~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~-~-----------~e~d~~~~~i~~ak~~G~~v~~~l~~s~-~~~~e 143 (333)
T TIGR03217 77 AKVAVLLLPGIGTVHDLKAAYDAGARTVRVATH-C-----------TEADVSEQHIGMARELGMDTVGFLMMSH-MTPPE 143 (333)
T ss_pred CEEEEEeccCccCHHHHHHHHHCCCCEEEEEec-c-----------chHHHHHHHHHHHHHcCCeEEEEEEccc-CCCHH
Confidence 457777788888899999999999998888762 1 1234678999999999999888777664 56888
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceE
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTR 378 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ir 378 (564)
.+.+.++.+. +.+++.|.+- .| -| .+.+++..+++..+.+.+++.+.
T Consensus 144 ~l~~~a~~~~---~~Ga~~i~i~------DT-------~G---~~~P~~v~~~v~~l~~~l~~~i~ 190 (333)
T TIGR03217 144 KLAEQAKLME---SYGADCVYIV------DS-------AG---AMLPDDVRDRVRALKAVLKPETQ 190 (333)
T ss_pred HHHHHHHHHH---hcCCCEEEEc------cC-------CC---CCCHHHHHHHHHHHHHhCCCCce
Confidence 8888888876 5778876442 22 12 35688888888888888865433
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >COG5014 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.69 Score=43.99 Aligned_cols=122 Identities=8% Similarity=0.032 Sum_probs=78.8
Q ss_pred hcchHHHHHHHHHHHHH-cCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEE
Q 008466 158 RYNPYVQARSRIDQLKR-LGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGM 235 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~-~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~ei 235 (564)
.+..-.++..|+.+..+ .| .+.+ +.|+.|+.-+ +.+.++++.+ . +-.+
T Consensus 72 ~f~~P~eVaeRL~ei~K~~g-----~d~vRiSG~EP~l~~-EHvlevIeLl----~--------------------~~tF 121 (228)
T COG5014 72 DFLSPEEVAERLLEISKKRG-----CDLVRISGAEPILGR-EHVLEVIELL----V--------------------NNTF 121 (228)
T ss_pred cccCHHHHHHHHHHHHHhcC-----CcEEEeeCCCccccH-HHHHHHHHhc----c--------------------CceE
Confidence 34455677777766544 34 4455 7899997554 5554555543 1 1357
Q ss_pred EEEeeCCCC--CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCC
Q 008466 236 TIETRPDYC--LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNV 309 (564)
Q Consensus 236 tiEtrPd~i--~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPge 309 (564)
.+||+--.+ ++..++.|.+.--..|-+.+--.+++...+|.-. .-..--.+|++.+.+.|+.+..-.++++--|
T Consensus 122 vlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~rf~pA~~~~f~~E 199 (228)
T COG5014 122 VLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGHRFWPAVVYDFFRE 199 (228)
T ss_pred EEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCceeeehhhhccchh
Confidence 888887666 8888999888544455555666777777766421 1134456888999999998777778877443
|
|
| >COG2388 Predicted acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.057 Score=46.88 Aligned_cols=41 Identities=22% Similarity=0.137 Sum_probs=31.5
Q ss_pred hhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhC
Q 008466 509 LQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKL 550 (564)
Q Consensus 509 ~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~kl 550 (564)
+||||+|++|++.|-+.||++ |.+-+-+++...|.-+.++.
T Consensus 51 lrGqGia~~L~~~al~~ar~~-g~kiiP~Csf~~a~~~~~~~ 91 (99)
T COG2388 51 LRGQGIAQKLVEKALEEAREA-GLKIIPLCSFAVATYFERHP 91 (99)
T ss_pred HcCCcHHHHHHHHHHHHHHHc-CCeEcccchHHHHHHHHhCh
Confidence 999999999999999999996 88766666644444444443
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=94.88 E-value=2.7 Score=44.60 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=84.1
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
..+++-..|...+.+.++...+.|++.|-+..- .++ .+.+.++++.+|+.|+.+...+|.. +.-+++
T Consensus 78 ~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~-~~e-----------~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e 144 (337)
T PRK08195 78 AKIAALLLPGIGTVDDLKMAYDAGVRVVRVATH-CTE-----------ADVSEQHIGLARELGMDTVGFLMMS-HMAPPE 144 (337)
T ss_pred CEEEEEeccCcccHHHHHHHHHcCCCEEEEEEe-cch-----------HHHHHHHHHHHHHCCCeEEEEEEec-cCCCHH
Confidence 456666678878889999999999998887751 111 3467899999999999988877765 456888
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceE
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTR 378 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ir 378 (564)
.+.+.++.+. +++++.|.+- .| -| .+.+++..+++..+.+.++|.+.
T Consensus 145 ~l~~~a~~~~---~~Ga~~i~i~------DT-------~G---~~~P~~v~~~v~~l~~~l~~~i~ 191 (337)
T PRK08195 145 KLAEQAKLME---SYGAQCVYVV------DS-------AG---ALLPEDVRDRVRALRAALKPDTQ 191 (337)
T ss_pred HHHHHHHHHH---hCCCCEEEeC------CC-------CC---CCCHHHHHHHHHHHHHhcCCCCe
Confidence 8888888876 5778875442 23 12 35688888888888888855443
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.8 Score=44.28 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=85.9
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
..+.+-+||..++.+.++...+.|+..|.+.+ ..+.++.+.++++.+|+.|+.+.+.++... +-+++
T Consensus 72 ~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~------------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~-~~~~~ 138 (266)
T cd07944 72 TKIAVMVDYGNDDIDLLEPASGSVVDMIRVAF------------HKHEFDEALPLIKAIKEKGYEVFFNLMAIS-GYSDE 138 (266)
T ss_pred CEEEEEECCCCCCHHHHHHHhcCCcCEEEEec------------ccccHHHHHHHHHHHHHCCCeEEEEEEeec-CCCHH
Confidence 46778888887888999999999998887765 224789999999999999999888777655 46788
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
.+.+.++.+. +.+++.|.+- .| -| ..++++..+++..+.+.+++
T Consensus 139 ~~~~~~~~~~---~~g~~~i~l~------DT-------~G---~~~P~~v~~lv~~l~~~~~~ 182 (266)
T cd07944 139 ELLELLELVN---EIKPDVFYIV------DS-------FG---SMYPEDIKRIISLLRSNLDK 182 (266)
T ss_pred HHHHHHHHHH---hCCCCEEEEe------cC-------CC---CCCHHHHHHHHHHHHHhcCC
Confidence 8888888876 4678876543 23 12 35788888888888887764
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.077 Score=51.73 Aligned_cols=50 Identities=26% Similarity=0.397 Sum_probs=34.3
Q ss_pred ccCCCchhhhhcCHHHHHHHHHHHHH-------------------------HhcCCCcEEEEecCC--CcHHHHhhCCCe
Q 008466 501 VHGREADKLQHQGYGTLLMEEAERIA-------------------------LGEHRSRKMAVISGV--GTRHYYRKLGYE 553 (564)
Q Consensus 501 v~~~~~~~~q~~GiG~~Lm~~aE~~A-------------------------~~~~g~~~i~~~s~~--~a~~fY~klGy~ 553 (564)
|+.+ +|++|||++|++.+++++ +.. +++.|-+.-+. ...+|..|.||.
T Consensus 98 vhP~----~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~vDylGtSFG~t~~Ll~FW~k~gf~ 172 (196)
T PF13718_consen 98 VHPD----LQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPP-GVDYLGTSFGATPELLKFWQKNGFV 172 (196)
T ss_dssp E-CC----C-SSSHHHHHHHHHHHT------------------------------S-SEEEEEEE--HHHHHHHHCTT-E
T ss_pred EChh----hhcCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccc-CCCEEEeccCCCHHHHHHHHHCCcE
Confidence 7887 999999999999999999 353 67776554333 458999999998
Q ss_pred ee
Q 008466 554 LE 555 (564)
Q Consensus 554 ~~ 555 (564)
..
T Consensus 173 pv 174 (196)
T PF13718_consen 173 PV 174 (196)
T ss_dssp EE
T ss_pred EE
Confidence 84
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=93.67 E-value=5.3 Score=41.04 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=81.3
Q ss_pred EEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEec-CCCCCCHHH
Q 008466 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMP-DLPNVGVER 313 (564)
Q Consensus 235 itiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~-GLPget~e~ 313 (564)
+.+...|+.+.++.++...+.|+..|.+..-. ++ ++.+.++++.+|+.|+.+...++. .-+.-+++.
T Consensus 83 ~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~-~~-----------~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~ 150 (275)
T cd07937 83 VGYRHYPDDVVELFVEKAAKNGIDIFRIFDAL-ND-----------VRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEY 150 (275)
T ss_pred cCccCCCcHHHHHHHHHHHHcCCCEEEEeecC-Ch-----------HHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHH
Confidence 34455788889999999999999998887633 23 678999999999999988766543 336678888
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 314 DLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 314 ~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
+.+.++.+. +.+++.|.+- .| -| ..++++..+++..+.+.++
T Consensus 151 ~~~~~~~~~---~~Ga~~i~l~------DT-------~G---~~~P~~v~~lv~~l~~~~~ 192 (275)
T cd07937 151 YVKLAKELE---DMGADSICIK------DM-------AG---LLTPYAAYELVKALKKEVG 192 (275)
T ss_pred HHHHHHHHH---HcCCCEEEEc------CC-------CC---CCCHHHHHHHHHHHHHhCC
Confidence 888888886 5678877653 23 12 2567888888888887765
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.14 Score=46.39 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=20.3
Q ss_pred EEEE-EEcCCCCC-CCHHHHHHHHHHHHHHh
Q 008466 182 VEFI-LMGGTFMS-LPADYRDYFIRNLHDAL 210 (564)
Q Consensus 182 ve~I-~~GGTpt~-l~~~~l~~ll~~l~~~~ 210 (564)
+..| +.||.|+. ...+.+.++++.+++.+
T Consensus 53 ~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~ 83 (139)
T PF13353_consen 53 IKGIVLTGGEPLLHENYDELLEILKYIKEKF 83 (139)
T ss_dssp CCEEEEECSTGGGHHSHHHHHHHHHHHHHTT
T ss_pred ceEEEEcCCCeeeeccHhHHHHHHHHHHHhC
Confidence 4555 78999976 25577777888777654
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=92.65 E-value=13 Score=39.90 Aligned_cols=119 Identities=13% Similarity=0.205 Sum_probs=81.4
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC--CHHHHHHHHHHHHHcCCcEEEEEecCCCCCC
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH--TVAAVADCFCLAKDAGFKVVAHMMPDLPNVG 310 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh--t~~~~~~ai~~lr~~G~~v~~~lI~GLPget 310 (564)
..+..-+|+ ..+.++.+.++|+.+|.+-+=+-+-.....+++.. ..+.+.++++.+++.|+.+.+.++-. .-.+
T Consensus 64 ~~v~~~~r~---~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda-~r~~ 139 (363)
T TIGR02090 64 AEICSLARA---LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDA-TRTD 139 (363)
T ss_pred cEEEEEccc---CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec-CCCC
Confidence 345555554 47889999999999888877443333344666542 45778899999999999988877654 3456
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 311 VERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 311 ~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+.+.++.+. +.+++.|.+--+. | ..++++..+++..+.+.++
T Consensus 140 ~~~l~~~~~~~~---~~g~~~i~l~DT~---G-------------~~~P~~v~~li~~l~~~~~ 184 (363)
T TIGR02090 140 IDFLIKVFKRAE---EAGADRINIADTV---G-------------VLTPQKMEELIKKLKENVK 184 (363)
T ss_pred HHHHHHHHHHHH---hCCCCEEEEeCCC---C-------------ccCHHHHHHHHHHHhcccC
Confidence 777888887776 5678876654321 2 2456777777777776654
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=92.56 E-value=11 Score=43.11 Aligned_cols=104 Identities=18% Similarity=0.175 Sum_probs=75.7
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEe-cCCCCCCHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMM-PDLPNVGVERDLESF 318 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI-~GLPget~e~~~~t~ 318 (564)
.||.+-...++...++|++.+.+-. +.|+- +.+..+++.+++.|+.+...+- .+-|--|++.+.+.+
T Consensus 93 ypd~vv~~~v~~A~~~Gvd~irif~-~lnd~-----------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a 160 (592)
T PRK09282 93 YPDDVVEKFVEKAAENGIDIFRIFD-ALNDV-----------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELA 160 (592)
T ss_pred ccchhhHHHHHHHHHCCCCEEEEEE-ecChH-----------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHH
Confidence 4888899999999999998887765 44442 5778899999999998765442 233888899999999
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
+.+. +.++|.|.+- .| .|. ..+++..+++..+++.++
T Consensus 161 ~~l~---~~Gad~I~i~------Dt-------~G~---~~P~~~~~lv~~lk~~~~ 197 (592)
T PRK09282 161 KELE---EMGCDSICIK------DM-------AGL---LTPYAAYELVKALKEEVD 197 (592)
T ss_pred HHHH---HcCCCEEEEC------Cc-------CCC---cCHHHHHHHHHHHHHhCC
Confidence 8887 4677876543 23 232 456777777777777654
|
|
| >COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.6 Score=44.81 Aligned_cols=61 Identities=23% Similarity=0.245 Sum_probs=47.6
Q ss_pred eeCCCCCHHHHHHHHHc-C-CCeEEEccCCCCHHH---HHhcCCCCCHHHHHHHHHHHHHcCCcEE
Q 008466 239 TRPDYCLGPHLRQMLSY-G-CTRLEIGVQSTYEDV---ARDTNRGHTVAAVADCFCLAKDAGFKVV 299 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~-G-~~rvsiGvQS~~d~v---L~~i~Rght~~~~~~ai~~lr~~G~~v~ 299 (564)
.+-++||...++.+.+. | -.+|+|=.|=-..-- .-.|+|.-|.+++.+|++.+++.||...
T Consensus 267 ghlecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~ 332 (335)
T COG1313 267 GHLECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNI 332 (335)
T ss_pred CchhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHcCCcee
Confidence 35567799999999886 4 467777777554433 3378999999999999999999999754
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=92.22 E-value=4 Score=40.54 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=83.5
Q ss_pred EEEEEEeeCCCCCHHH-HHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCC
Q 008466 233 IGMTIETRPDYCLGPH-LRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNV 309 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~-L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPge 309 (564)
..+..-+++..-+-+. ++.+++.|++++.+-+-..+......+++. ...+.+.++++.+|+.|+.+.+.++... .-
T Consensus 56 ~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~-~~ 134 (237)
T PF00682_consen 56 ARLQALCRANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS-RT 134 (237)
T ss_dssp SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-GS
T ss_pred cccceeeeehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-cc
Confidence 3566666765333344 555677999999998744433444455542 2357778889999999999987776664 45
Q ss_pred CHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 310 GVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 310 t~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+++.+.+.++.+. +++++.|.+-- | +-..++++..+++..+.+.+|+
T Consensus 135 ~~~~~~~~~~~~~---~~g~~~i~l~D------t----------~G~~~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 135 DPEELLELAEALA---EAGADIIYLAD------T----------VGIMTPEDVAELVRALREALPD 181 (237)
T ss_dssp SHHHHHHHHHHHH---HHT-SEEEEEE------T----------TS-S-HHHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHH---HcCCeEEEeeC------c----------cCCcCHHHHHHHHHHHHHhccC
Confidence 7788888888886 45788775532 2 1125688899999999999985
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=91.83 E-value=4.7 Score=40.57 Aligned_cols=123 Identities=20% Similarity=0.154 Sum_probs=82.6
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcC-CCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcCCC
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSG-HTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYGCT 258 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~-~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G~~ 258 (564)
|..+ |++||.+..|.+.+++.++..+++--. +.. ++-+|. -....-++.++..++.|++
T Consensus 25 ID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G------------------Gtl~E~~~~q~~~~~Yl~~~k~lGf~ 86 (237)
T TIGR03849 25 ITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG------------------GTLFEIAHSKGKFDEYLNECDELGFE 86 (237)
T ss_pred eeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC------------------ccHHHHHHHhhhHHHHHHHHHHcCCC
Confidence 7788 899999999999999888877653210 011 111111 1112346788899999999
Q ss_pred eEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCC----CCCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 259 RLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLP----NVGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLP----get~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
.|+|.-=|++ .+.++-.+.++.+++.||++..-+=.-.| -.+.+++.+.++..++ .+.+.|-+
T Consensus 87 ~IEiS~G~~~----------i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~Le---AGA~~Vii 153 (237)
T TIGR03849 87 AVEISDGSME----------ISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLE---AGADYVII 153 (237)
T ss_pred EEEEcCCccC----------CCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHH---CCCcEEEE
Confidence 9999876653 56788889999999999987643221222 1456677777777774 56777654
Q ss_pred e
Q 008466 335 Y 335 (564)
Q Consensus 335 y 335 (564)
-
T Consensus 154 E 154 (237)
T TIGR03849 154 E 154 (237)
T ss_pred e
Confidence 3
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.82 E-value=16 Score=37.08 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=81.0
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
..+.+-.+|.....+.++...+.|++.|.+.. +.++ ...+.++++.+++.|+.+...++-.. .-+++
T Consensus 75 ~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~-~~s~-----------~~~~~~~i~~ak~~G~~v~~~~~~~~-~~~~~ 141 (263)
T cd07943 75 AKLGVLLLPGIGTVDDLKMAADLGVDVVRVAT-HCTE-----------ADVSEQHIGAARKLGMDVVGFLMMSH-MASPE 141 (263)
T ss_pred CEEEEEecCCccCHHHHHHHHHcCCCEEEEEe-chhh-----------HHHHHHHHHHHHHCCCeEEEEEEecc-CCCHH
Confidence 34555566777778999999999999888855 4433 24678899999999999887775543 35778
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
.+.+.++.+. +.++|.|.+ +.| +-...+++..+++..+.+.++.
T Consensus 142 ~~~~~~~~~~---~~G~d~i~l------~DT----------~G~~~P~~v~~lv~~l~~~~~~ 185 (263)
T cd07943 142 ELAEQAKLME---SYGADCVYV------TDS----------AGAMLPDDVRERVRALREALDP 185 (263)
T ss_pred HHHHHHHHHH---HcCCCEEEE------cCC----------CCCcCHHHHHHHHHHHHHhCCC
Confidence 8888888876 567887653 333 1135688888888888888765
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.35 E-value=24 Score=38.06 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=79.4
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCH
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGV 311 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~ 311 (564)
.+..-+|. ..+.++...++|+++|.+.+-+-+-.....+|+. ...+.+.++++.+++.|+.+.+..+.+- -.++
T Consensus 69 ~i~~~~r~---~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~-r~~~ 144 (378)
T PRK11858 69 SILALNRA---VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDAS-RTDL 144 (378)
T ss_pred EEEEEccc---CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCC-CCCH
Confidence 34444443 4778999999999999999955554555566653 2345666699999999999888765443 4567
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 312 ERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 312 e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
+.+.+.++.+. +.+++.|.+- .|- | ..++++..+++..+.+.+
T Consensus 145 ~~l~~~~~~~~---~~Ga~~I~l~------DT~-------G---~~~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 145 DFLIEFAKAAE---EAGADRVRFC------DTV-------G---ILDPFTMYELVKELVEAV 187 (378)
T ss_pred HHHHHHHHHHH---hCCCCEEEEe------ccC-------C---CCCHHHHHHHHHHHHHhc
Confidence 77777777776 4678876543 231 1 245677777777776665
|
|
| >TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=91.22 E-value=1.3 Score=41.37 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=32.4
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..| |.||. +-.+.+.++++.+++. . ..+.++|+ ...++..+.+.+. ++.+
T Consensus 62 ~~gVt~SGGE---l~~~~l~~ll~~lk~~-G---------------------l~i~l~Tg--~~~~~~~~~il~~-iD~l 113 (147)
T TIGR02826 62 ISCVLFLGGE---WNREALLSLLKIFKEK-G---------------------LKTCLYTG--LEPKDIPLELVQH-LDYL 113 (147)
T ss_pred CCEEEEechh---cCHHHHHHHHHHHHHC-C---------------------CCEEEECC--CCCHHHHHHHHHh-CCEE
Confidence 3455 78888 5556777777777642 1 34677875 2333344444332 6777
Q ss_pred EEcc
Q 008466 261 EIGV 264 (564)
Q Consensus 261 siGv 264 (564)
.+|.
T Consensus 114 ~~g~ 117 (147)
T TIGR02826 114 KTGR 117 (147)
T ss_pred EECh
Confidence 7776
|
Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=90.86 E-value=17 Score=41.56 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=76.0
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEE-ecCCCCCCHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHM-MPDLPNVGVERDLESF 318 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~l-I~GLPget~e~~~~t~ 318 (564)
.||.+.++.++...+.|++.+.+-. +.|+ .+.+..+++.++++|+.+...+ +.+-|--|.+.+.+.+
T Consensus 88 ypddvv~~~v~~a~~~Gvd~irif~-~lnd-----------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~ 155 (582)
T TIGR01108 88 YADDVVERFVKKAVENGMDVFRIFD-ALND-----------PRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLA 155 (582)
T ss_pred CchhhHHHHHHHHHHCCCCEEEEEE-ecCc-----------HHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHH
Confidence 5888889999999999998887764 4444 2568889999999999877543 2336777889888999
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
+.+. +.+.|.|.+- .| .| ..++.+..+++..+++.++
T Consensus 156 ~~~~---~~Gad~I~i~------Dt-------~G---~~~P~~v~~lv~~lk~~~~ 192 (582)
T TIGR01108 156 EELL---EMGVDSICIK------DM-------AG---ILTPKAAYELVSALKKRFG 192 (582)
T ss_pred HHHH---HcCCCEEEEC------CC-------CC---CcCHHHHHHHHHHHHHhCC
Confidence 8887 4677766542 33 12 2457777777777777765
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >COG5628 Predicted acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.3 Score=39.62 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=54.2
Q ss_pred EEeeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHH
Q 008466 443 DYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEA 522 (564)
Q Consensus 443 ~y~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~a 522 (564)
+|..-.|.+-++-..+ |.+|||+-+- +.+|.+--.+ --+-|. -|..+ ||++|+||+-.++.
T Consensus 30 ~~w~~~~~~~~~~~~~---~~~igf~l~L---~~~~~~~~iD--~~~~ef-------FIi~k----~~~~GvGR~aaK~I 90 (143)
T COG5628 30 TYWRDPVREAWLFRIG---GLPVGFALVL---DLAHSPTPID--RAVAEF-------FIVRK----HRRRGVGRAAAKAI 90 (143)
T ss_pred hhhcCcccceeEEEEC---Cceeeeeeee---cccCCCCccc--ccchhe-------Eeeeh----hhccchhHHHHHHH
Confidence 4544455555555555 7789998553 1222222111 001111 13344 99999999988877
Q ss_pred HHHHHhcCCCcEE-EEecCCCcHHHHhhCCCee
Q 008466 523 ERIALGEHRSRKM-AVISGVGTRHYYRKLGYEL 554 (564)
Q Consensus 523 E~~A~~~~g~~~i-~~~s~~~a~~fY~klGy~~ 554 (564)
=..++ |.-.+ ++..|..|+.|+++.=|..
T Consensus 91 f~~~~---g~w~Va~i~EN~PA~~fwK~~~~t~ 120 (143)
T COG5628 91 FGSAW---GVWQVATVRENTPARAFWKRVAETY 120 (143)
T ss_pred HHHhh---ceEEEEEeccCChhHHHHHhhhccc
Confidence 55443 44444 6778999999999987754
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=90.48 E-value=22 Score=36.08 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=80.4
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHH-HHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCC
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYED-VARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVG 310 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~-vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget 310 (564)
.+..-.|+ +.+.++...+.|+++|.+.+ |.++. ..+.+|+. ...+.+.++++.+++.|+.+.+.++..- .-+
T Consensus 63 ~~~~~~r~---~~~~v~~a~~~g~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~-~~~ 137 (259)
T cd07939 63 RLIVWCRA---VKEDIEAALRCGVTAVHISI-PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDAS-RAD 137 (259)
T ss_pred EEEEeccC---CHHHHHHHHhCCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCC-CCC
Confidence 34444454 37788999999999999988 55554 44566653 2345667899999999998887666543 356
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 311 VERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 311 ~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+.+.++.+. +.+++.|.+ ..| -| ...+++..+++..+.+.+|
T Consensus 138 ~~~~~~~~~~~~---~~G~~~i~l------~DT-------~G---~~~P~~v~~lv~~l~~~~~ 182 (259)
T cd07939 138 PDFLIEFAEVAQ---EAGADRLRF------ADT-------VG---ILDPFTTYELIRRLRAATD 182 (259)
T ss_pred HHHHHHHHHHHH---HCCCCEEEe------CCC-------CC---CCCHHHHHHHHHHHHHhcC
Confidence 787888887776 467887654 233 12 2567788888887777765
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=15 Score=42.01 Aligned_cols=103 Identities=13% Similarity=0.131 Sum_probs=72.7
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEec-CCCCCCHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMP-DLPNVGVERDLESF 318 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~-GLPget~e~~~~t~ 318 (564)
.||.+-+..++...+.|++.+.|.. ++|+ ++.+..+++.+|+.|..+...+-+ +-|-.|.+.+.+.+
T Consensus 94 ypddvv~~~v~~a~~~Gid~~rifd-~lnd-----------~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a 161 (593)
T PRK14040 94 YADDVVERFVERAVKNGMDVFRVFD-AMND-----------PRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLA 161 (593)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEee-eCCc-----------HHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHH
Confidence 4787778899999999999888874 4444 367889999999999975432221 35777888888888
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
+.+. +.++|.|.+- .| .|. +.+++..+++..+++.+
T Consensus 162 ~~l~---~~Gad~i~i~------Dt-------~G~---l~P~~~~~lv~~lk~~~ 197 (593)
T PRK14040 162 KQLE---DMGVDSLCIK------DM-------AGL---LKPYAAYELVSRIKKRV 197 (593)
T ss_pred HHHH---HcCCCEEEEC------CC-------CCC---cCHHHHHHHHHHHHHhc
Confidence 8876 4677766542 23 122 45677777777776664
|
|
| >PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.64 Score=47.56 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=41.7
Q ss_pred hhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCceEe
Q 008466 509 LQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMV 560 (564)
Q Consensus 509 ~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~ 560 (564)
|||||+++.+-.+.-..+.++ |+.-..-..|.....+=+||||+...+|..
T Consensus 200 yR~kGLA~~~aa~~I~~Cl~~-~l~P~WDc~N~~S~~lA~kLGf~~~~~Y~~ 250 (265)
T PF12746_consen 200 YRGKGLATAVAAAFILECLEN-GLYPSWDCHNLASIALAEKLGFHFDFEYTA 250 (265)
T ss_dssp CTTSSHHHHHHHHHHHHHHHT-T-EEE-EESSHHHHHHHHHCT--EEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHC-CCCcCeeCCCHHHHHHHHHcCCcccceeee
Confidence 999999999999999999994 988876667877899999999999888754
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=89.98 E-value=24 Score=35.90 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=82.4
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcC----CCeEEEccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYG----CTRLEIGVQSTYEDVA-RDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G----~~rvsiGvQS~~d~vL-~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
..+..-+|+. .+.++...++| +++|.+-+ |.++.-+ +.+|+. ..++.+.++++.+++.|+.+.+..+.+
T Consensus 62 ~~~~~l~r~~---~~~v~~a~~~~~~~~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~ 137 (268)
T cd07940 62 AEICGLARAV---KKDIDAAAEALKPAKVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDA 137 (268)
T ss_pred CEEEEEccCC---HhhHHHHHHhCCCCCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecC
Confidence 4566666664 66778888888 88888877 5555544 456654 235778889999999999988766654
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 306 LPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 306 LPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
- .-+++.+.+.++.+. +++++.|.+- .| -| ..++++..+++..+...+|
T Consensus 138 ~-~~~~~~~~~~~~~~~---~~G~~~i~l~------DT-------~G---~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 138 T-RTDLDFLIEVVEAAI---EAGATTINIP------DT-------VG---YLTPEEFGELIKKLKENVP 186 (268)
T ss_pred C-CCCHHHHHHHHHHHH---HcCCCEEEEC------CC-------CC---CCCHHHHHHHHHHHHHhCC
Confidence 3 356777788888876 4678876542 23 11 2567888888888888776
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=89.89 E-value=6.8 Score=41.75 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=78.6
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHcCCcEEEEE--ecCCCCC---CHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVAR-DTNRG--HTVAAVADCFCLAKDAGFKVVAHM--MPDLPNV---GVERDLE 316 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~-~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~l--I~GLPge---t~e~~~~ 316 (564)
+.+.++...++|+.+|.+.+ |.+|.-++ .+|+. ...+.+.++++.+++.|+.+...+ .+|.|.+ +++.+.+
T Consensus 123 n~~die~A~~~g~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~ 201 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAY 201 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHH
Confidence 78899999999999999999 77776555 34443 233445579999999999987555 6788876 4566677
Q ss_pred HHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 317 SFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 317 t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
.++.+. +.+.+.|.+- .| -| ..++.+..+++..+.+.+|
T Consensus 202 ~~~~~~---~~Gad~I~l~------DT-------~G---~a~P~~v~~lv~~l~~~~~ 240 (347)
T PLN02746 202 VAKELY---DMGCYEISLG------DT-------IG---VGTPGTVVPMLEAVMAVVP 240 (347)
T ss_pred HHHHHH---HcCCCEEEec------CC-------cC---CcCHHHHHHHHHHHHHhCC
Confidence 777776 5678876653 33 12 2457778888877777765
|
|
| >COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.79 E-value=3.2 Score=41.02 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=78.3
Q ss_pred cEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHcCCC
Q 008466 181 KVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSYGCT 258 (564)
Q Consensus 181 kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~G~~ 258 (564)
-|..| |++||++.++.++.++.+...+++--..+ +. +.-+| +.-+.--++.+...++.||+
T Consensus 43 yVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v~---------------pG--Gtlfe~a~~~~kvdeyl~e~~~lGfe 105 (258)
T COG1809 43 YVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVF---------------PG--GTLFEIAYSQDKVDEYLNEAKELGFE 105 (258)
T ss_pred heeeeeecccccccccHHHHHHHHHHHHHcCceec---------------CC--ceEEEeehhcccHHHHHHHHHHcCcc
Confidence 38888 89999999999999999998876432111 11 23334 34444567899999999999
Q ss_pred eEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC----CCHHHHHHHHHHHh
Q 008466 259 RLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN----VGVERDLESFREFF 322 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPg----et~e~~~~t~~~~~ 322 (564)
.|+|.==|. ..+.++-.+.++++.+.||.+-.-+=--.|. +++++....+...+
T Consensus 106 ~iEIS~G~i----------~m~~eek~~lIe~a~d~Gf~vlsEvGkk~~e~~~~l~~~d~~k~i~~dv 163 (258)
T COG1809 106 AIEISNGTI----------PMSTEEKCRLIERAVDEGFMVLSEVGKKDPESDSALSPDDRVKLINDDV 163 (258)
T ss_pred EEEecCCee----------ecchHHHHHHHHHHHhcccEEehhhcccCcchhhhcChHHHHHHHHHHH
Confidence 999965443 3467888899999999999876533222221 23445555555544
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=89.59 E-value=26 Score=35.75 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=78.0
Q ss_pred EEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCH
Q 008466 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR-DTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGV 311 (564)
Q Consensus 235 itiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~-~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~ 311 (564)
+..-.|| +.+.++...+.|++.|.+-+ |.++..++ .+++. ...+.+.++++.+++.|+.+.+.++-.. +-++
T Consensus 66 v~~~~r~---~~~di~~a~~~g~~~i~i~~-~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~-r~~~ 140 (262)
T cd07948 66 ILTHIRC---HMDDARIAVETGVDGVDLVF-GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSF-RSDL 140 (262)
T ss_pred EEEEecC---CHHHHHHHHHcCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC-CCCH
Confidence 4333455 47789999999999988877 55565544 34432 2345577778999999999888775444 3346
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 312 ERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 312 e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+.+.+.++.+. +.+++.+.+ ..| -| ..++++..+++..+...++.
T Consensus 141 ~~l~~~~~~~~---~~g~~~i~l------~Dt-------~G---~~~P~~v~~~~~~~~~~~~~ 185 (262)
T cd07948 141 VDLLRVYRAVD---KLGVNRVGI------ADT-------VG---IATPRQVYELVRTLRGVVSC 185 (262)
T ss_pred HHHHHHHHHHH---HcCCCEEEE------CCc-------CC---CCCHHHHHHHHHHHHHhcCC
Confidence 77777777776 467786543 233 12 35677888888877777653
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=89.53 E-value=9.1 Score=39.36 Aligned_cols=111 Identities=19% Similarity=0.180 Sum_probs=80.1
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEe--cCCCCC---CHHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMM--PDLPNV---GVERDLES 317 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI--~GLPge---t~e~~~~t 317 (564)
+.+.++...+.|+..|.+.+-+.+....+.+|+. ...+.+.++++.+++.|+.+...++ +|.|.+ +++.+.+.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~ 154 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEV 154 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHH
Confidence 5778999999999999998866555555677765 4557888899999999999876665 555654 45666677
Q ss_pred HHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 318 FREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 318 ~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+. +.+++.|.+- .|- | ..++.+..+++..+++.+|
T Consensus 155 ~~~~~---~~Ga~~i~l~------DT~-------G---~~~P~~v~~lv~~l~~~~~ 192 (274)
T cd07938 155 AERLL---DLGCDEISLG------DTI-------G---VATPAQVRRLLEAVLERFP 192 (274)
T ss_pred HHHHH---HcCCCEEEEC------CCC-------C---ccCHHHHHHHHHHHHHHCC
Confidence 77765 4677776542 231 1 2567788888888887775
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=89.40 E-value=33 Score=36.68 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=79.6
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHH-HHhcCCCC--CHHHHHHHHHHHHHcCCcEEEEEecCCCCCC
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDV-ARDTNRGH--TVAAVADCFCLAKDAGFKVVAHMMPDLPNVG 310 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~v-L~~i~Rgh--t~~~~~~ai~~lr~~G~~v~~~lI~GLPget 310 (564)
.++.-.|+. .+.++...++|+..|.+-+ +.++.- ...+|+.. .++.+.++++.+++.|+.+.+.++-+ +--+
T Consensus 66 ~i~~~~r~~---~~di~~a~~~g~~~i~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~-~r~~ 140 (365)
T TIGR02660 66 RLMAWCRAR---DADIEAAARCGVDAVHISI-PVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDA-SRAD 140 (365)
T ss_pred EEEEEcCCC---HHHHHHHHcCCcCEEEEEE-ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCC-CCCC
Confidence 455555654 7889999999999999988 555544 44566542 33556689999999999988776654 3456
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 311 VERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 311 ~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+.+.++.+. +.+++.|.+ +.|- | ..++++..+++..+.+.++
T Consensus 141 ~~~l~~~~~~~~---~~Ga~~i~l------~DT~-------G---~~~P~~v~~lv~~l~~~~~ 185 (365)
T TIGR02660 141 PDFLVELAEVAA---EAGADRFRF------ADTV-------G---ILDPFSTYELVRALRQAVD 185 (365)
T ss_pred HHHHHHHHHHHH---HcCcCEEEE------cccC-------C---CCCHHHHHHHHHHHHHhcC
Confidence 777777777776 467776543 3331 2 2467777777777776653
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=89.36 E-value=28 Score=35.69 Aligned_cols=110 Identities=21% Similarity=0.238 Sum_probs=75.8
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEe---cCCCCCCHHHHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMM---PDLPNVGVERDLESFR 319 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI---~GLPget~e~~~~t~~ 319 (564)
++..++.+.+.|++.|.+.+=+-+-...+.+|+. ..++.+.++++.+++.|+.+.+..+ -|. -.+++.+.+.++
T Consensus 80 ~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~-~~~~~~~~~~~~ 158 (273)
T cd07941 80 EDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGY-KANPEYALATLK 158 (273)
T ss_pred chHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccC-CCCHHHHHHHHH
Confidence 3457889999999998887644444455567665 5678888999999999999876433 222 345776777777
Q ss_pred HHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 320 EFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 320 ~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
.+. +.+++.|.+ ..|- | ..++++..+++..+++.+|
T Consensus 159 ~~~---~~g~~~i~l------~DT~-------G---~~~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 159 AAA---EAGADWLVL------CDTN-------G---GTLPHEIAEIVKEVRERLP 194 (273)
T ss_pred HHH---hCCCCEEEE------ecCC-------C---CCCHHHHHHHHHHHHHhCC
Confidence 776 467776543 2231 1 2567788888888888776
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.1 Score=41.65 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=39.8
Q ss_pred hhhcCHHHHHHHHHHHHHHhcCCCcEEEEec---CCCcHHHHhhCCCeeeC
Q 008466 509 LQHQGYGTLLMEEAERIALGEHRSRKMAVIS---GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 509 ~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s---~~~a~~fY~klGy~~~g 556 (564)
.||+|||+..+...-.||....++.+..+.. +....+||+|++|...-
T Consensus 119 ~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~ 169 (185)
T KOG4135|consen 119 GRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVF 169 (185)
T ss_pred ccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeee
Confidence 7999999999999999998866788876655 44558999999997643
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=23 Score=39.65 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=76.5
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEE--EecCCCCCCHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAH--MMPDLPNVGVERDLE 316 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~--lI~GLPget~e~~~~ 316 (564)
.-||.+-+..++...+.|++.+.|.. +.||- +....+++.++++|..+... ++. -|-.|.+.+.+
T Consensus 93 ~y~ddvv~~fv~~a~~~Gidi~RIfd-~lndv-----------~nl~~ai~~vk~ag~~~~~~i~yt~-sp~~t~e~~~~ 159 (499)
T PRK12330 93 HYEDEVVDRFVEKSAENGMDVFRVFD-ALNDP-----------RNLEHAMKAVKKVGKHAQGTICYTV-SPIHTVEGFVE 159 (499)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEEe-cCChH-----------HHHHHHHHHHHHhCCeEEEEEEEec-CCCCCHHHHHH
Confidence 35888889999999999998777754 23332 67778899999999876433 333 37789998889
Q ss_pred HHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 317 SFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 317 t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
.++.+. +.+++.|.|- .| .| .+++++..+++..+++.+|+.
T Consensus 160 ~a~~l~---~~Gad~I~Ik------Dt-------aG---ll~P~~~~~LV~~Lk~~~~~~ 200 (499)
T PRK12330 160 QAKRLL---DMGADSICIK------DM-------AA---LLKPQPAYDIVKGIKEACGED 200 (499)
T ss_pred HHHHHH---HcCCCEEEeC------CC-------cc---CCCHHHHHHHHHHHHHhCCCC
Confidence 888887 4678876542 23 12 356788888888888887644
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.18 E-value=25 Score=39.10 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=75.2
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLES 317 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t 317 (564)
.||.+-+..++...+.|++.+.+-. +.|+ .+.+..+++.+++.|..+.. +...+ |-.|.+.+.+.
T Consensus 92 ~~dDvv~~fv~~A~~~Gvd~irif~-~lnd-----------~~n~~~~i~~ak~~G~~v~~~i~~t~~-p~~t~e~~~~~ 158 (467)
T PRK14041 92 YADDVVELFVKKVAEYGLDIIRIFD-ALND-----------IRNLEKSIEVAKKHGAHVQGAISYTVS-PVHTLEYYLEF 158 (467)
T ss_pred ccchhhHHHHHHHHHCCcCEEEEEE-eCCH-----------HHHHHHHHHHHHHCCCEEEEEEEeccC-CCCCHHHHHHH
Confidence 5777777789999999999888876 5555 35678889999999998663 44455 77888888888
Q ss_pred HHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 318 FREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 318 ~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+. +.++|.|.+- .| .| ..++.+..+++..+++.++
T Consensus 159 a~~l~---~~Gad~I~i~------Dt-------~G---~l~P~~v~~Lv~~lk~~~~ 196 (467)
T PRK14041 159 ARELV---DMGVDSICIK------DM-------AG---LLTPKRAYELVKALKKKFG 196 (467)
T ss_pred HHHHH---HcCCCEEEEC------Cc-------cC---CcCHHHHHHHHHHHHHhcC
Confidence 88886 4677876542 23 12 2456777777777777654
|
|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=89.09 E-value=15 Score=37.54 Aligned_cols=146 Identities=10% Similarity=0.138 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCc------hhhHHHhhhcccCCccc
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTS------ANVEEAVTYSEHGATKC 232 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~------~~l~e~~~~~~~~~~~~ 232 (564)
..+..++.+..++.+.| ...| ++++++..-..+.+.++++.+.+..+..++ .-+++|++.-. +
T Consensus 22 ~d~~~i~~~A~~~~~~G-----AdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~-G---- 91 (261)
T PRK07535 22 KDAAFIQKLALKQAEAG-----ADYLDVNAGTAVEEEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAK-G---- 91 (261)
T ss_pred CCHHHHHHHHHHHHHCC-----CCEEEECCCCCchhHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCC-C----
Confidence 44556666666667777 5667 677765444456777788888765432121 22455554311 1
Q ss_pred EEEEEEeeCCC-CCHHHHHHHHHcCCCeEEEcc--CCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCC---cEEEEEecCC
Q 008466 233 IGMTIETRPDY-CLGPHLRQMLSYGCTRLEIGV--QSTYEDVARDTNRGHTVAAVADCFCLAKDAGF---KVVAHMMPDL 306 (564)
Q Consensus 233 ~eitiEtrPd~-i~~e~L~~L~~~G~~rvsiGv--QS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~---~v~~~lI~GL 306 (564)
..+-=..+... -.++.+..++++|+.-|-+-. +......-+ ..+...+.++.+.++|+ ++..|-.+|.
T Consensus 92 ~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~------~~~~l~~~v~~a~~~GI~~~~IilDPgi~~ 165 (261)
T PRK07535 92 PPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAED------RLAVAKELVEKADEYGIPPEDIYIDPLVLP 165 (261)
T ss_pred CCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHH------HHHHHHHHHHHHHHcCCCHhHEEEeCCCCc
Confidence 11111112211 145778888999987775543 222211111 14566777888999999 5888999997
Q ss_pred CCCCHHHHHHHHHHH
Q 008466 307 PNVGVERDLESFREF 321 (564)
Q Consensus 307 Pget~e~~~~t~~~~ 321 (564)
.|.+.+...++++.+
T Consensus 166 ~~~~~~~~~~~l~~i 180 (261)
T PRK07535 166 LSAAQDAGPEVLETI 180 (261)
T ss_pred ccCChHHHHHHHHHH
Confidence 777766664444444
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=8.8 Score=39.75 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=78.6
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEe--cCCCCC---CHHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMM--PDLPNV---GVERDLES 317 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI--~GLPge---t~e~~~~t 317 (564)
+.+.++...++|+++|.+-+-+.+....+.+++. ...+.+.++++.+++.|+.+...+. +|.|.+ +++.+.+.
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~ 160 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADV 160 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHH
Confidence 5778899999999999998744433344455554 2345688899999999999876555 577776 67777777
Q ss_pred HHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 318 FREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 318 ~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+. +.++|.|.+- .|- | ..++.+..+++..+++.+|
T Consensus 161 ~~~~~---~~G~d~i~l~------DT~-------G---~~~P~~v~~lv~~l~~~~~ 198 (287)
T PRK05692 161 AERLF---ALGCYEISLG------DTI-------G---VGTPGQVRAVLEAVLAEFP 198 (287)
T ss_pred HHHHH---HcCCcEEEec------ccc-------C---ccCHHHHHHHHHHHHHhCC
Confidence 77776 4678876542 331 1 2467788888888887765
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=88.94 E-value=2.2 Score=43.44 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=76.4
Q ss_pred EEEEEEeeCCCC-CHHHHHHHHHcCCCeEEEccCCC---------CHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEE
Q 008466 233 IGMTIETRPDYC-LGPHLRQMLSYGCTRLEIGVQST---------YEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVA 300 (564)
Q Consensus 233 ~eitiEtrPd~i-~~e~L~~L~~~G~~rvsiGvQS~---------~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~ 300 (564)
+.+-.-..||.= +.+.+..|.+.|++.|+||+=.. .....+.+..|.|++++.+.++.+++. .+++.
T Consensus 13 i~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv- 91 (256)
T TIGR00262 13 IPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG- 91 (256)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-
Confidence 334444467632 46778899999999999999432 233456678899999999999999975 56665
Q ss_pred EEecCCC--CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCC
Q 008466 301 HMMPDLP--NVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGR 353 (564)
Q Consensus 301 ~lI~GLP--get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~ 353 (564)
+||+--| .-..+++.+.+. +.+++.+-++.+.+..-..+.+.+++..
T Consensus 92 ~m~Y~Npi~~~G~e~f~~~~~------~aGvdgviipDlp~ee~~~~~~~~~~~g 140 (256)
T TIGR00262 92 LLTYYNLIFRKGVEEFYAKCK------EVGVDGVLVADLPLEESGDLVEAAKKHG 140 (256)
T ss_pred EEEeccHHhhhhHHHHHHHHH------HcCCCEEEECCCChHHHHHHHHHHHHCC
Confidence 8888755 223455555444 4578999888765544344444444443
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=88.84 E-value=1.3 Score=41.51 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=21.2
Q ss_pred EEEE-EEcCCCCCCC-HHHHHHHHHHHHHHh
Q 008466 182 VEFI-LMGGTFMSLP-ADYRDYFIRNLHDAL 210 (564)
Q Consensus 182 ve~I-~~GGTpt~l~-~~~l~~ll~~l~~~~ 210 (564)
+..| |.||.|+..+ .+.+.++++.+++.+
T Consensus 64 ~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~ 94 (154)
T TIGR02491 64 IDGLTLSGGDPLYPRNVEELIELVKKIKAEF 94 (154)
T ss_pred cCeEEEeChhhCCCCCHHHHHHHHHHHHHhC
Confidence 4445 7899998753 477888888887654
|
This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. |
| >KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.74 E-value=0.98 Score=45.76 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=77.5
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc---EEEEEecCCCCCC
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK---VVAHMMPDLPNVG 310 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~---v~~~lI~GLPget 310 (564)
.+-|+++-- +....+-.+.++|.+.+.+.+.|....-...+-|..+...+...++++.+.|.. +++-.|=|+-+..
T Consensus 91 s~~ITtng~-vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n~~e 169 (323)
T KOG2876|consen 91 SIGITTNGL-VLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLNEDE 169 (323)
T ss_pred hhceeccch-hhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccCCCc
Confidence 455555433 667889999999999999999999999999999999999999999999988874 5677888886543
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCCh
Q 008466 311 VERDLESFREFFESPLFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 311 ~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~ 344 (564)
.- +++. ..+.+|-.+.+-.+++.-|..
T Consensus 170 v~------Dfv~-~tr~~p~DVrfIe~mpf~gn~ 196 (323)
T KOG2876|consen 170 VF------DFVL-LTRMRPLDVRFIEFMPFDGNK 196 (323)
T ss_pred cc------ceee-ecCCCCcceEEEEecccCCCc
Confidence 32 2222 124566677777777777764
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=37 Score=37.52 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=74.7
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLE 316 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~ 316 (564)
..||.+..+.++...+.|++.|.+-. +.|+- ..+.++++.+++.|+.+.. ....+ |--+.+.+.+
T Consensus 92 ~~pddvv~~~v~~A~~~Gvd~irif~-~lnd~-----------~n~~~~v~~ak~~G~~v~~~i~~t~~-p~~~~~~~~~ 158 (448)
T PRK12331 92 NYADDVVESFVQKSVENGIDIIRIFD-ALNDV-----------RNLETAVKATKKAGGHAQVAISYTTS-PVHTIDYFVK 158 (448)
T ss_pred cCchhhHHHHHHHHHHCCCCEEEEEE-ecCcH-----------HHHHHHHHHHHHcCCeEEEEEEeecC-CCCCHHHHHH
Confidence 36888889999999999999888876 44443 2467789999999988553 44445 7778888888
Q ss_pred HHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 317 SFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 317 t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
.++.+. +.++|.|.+- .| -| ..++.+..+++..+++.++
T Consensus 159 ~a~~l~---~~Gad~I~i~------Dt-------~G---~l~P~~v~~lv~alk~~~~ 197 (448)
T PRK12331 159 LAKEMQ---EMGADSICIK------DM-------AG---ILTPYVAYELVKRIKEAVT 197 (448)
T ss_pred HHHHHH---HcCCCEEEEc------CC-------CC---CCCHHHHHHHHHHHHHhcC
Confidence 888886 5678876553 22 12 2556777777777777654
|
|
| >PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length | Back alignment and domain information |
|---|
Probab=88.38 E-value=1.8 Score=39.26 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=50.8
Q ss_pred CCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHH
Q 008466 447 NEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIA 526 (564)
Q Consensus 447 ~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A 526 (564)
.++..+|.+-=+ |.|+|.+.+.... ..+ +|+ -+.|.+- -|++|+|..|++++.+.+
T Consensus 35 ~~~~~l~aArFN---dRlLgAv~v~~~~----------~~~---~L~----~l~VRev----TRrRGVG~yLlee~~rq~ 90 (128)
T PF12568_consen 35 DEGHRLFAARFN---DRLLGAVKVTISG----------QQA---ELS----DLCVREV----TRRRGVGLYLLEEVLRQL 90 (128)
T ss_dssp -SSEEEEEEEET---TEEEEEEEEEEET----------TEE---EEE----EEEE-TT-----SSSSHHHHHHHHHHHHS
T ss_pred ccCCeEEEEEec---hheeeeEEEEEcC----------cce---EEe----eEEEeec----cccccHHHHHHHHHHHHC
Confidence 345777888554 7999999999765 121 221 1235655 699999999999998887
Q ss_pred HhcCCCcEEEEec-CCC------cHHHHhhCCCeeeC
Q 008466 527 LGEHRSRKMAVIS-GVG------TRHYYRKLGYELEG 556 (564)
Q Consensus 527 ~~~~g~~~i~~~s-~~~------a~~fY~klGy~~~g 556 (564)
. .++...+.. +.. ...|-..+||...+
T Consensus 91 p---~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 91 P---DIKHWWLADEGVEPQDRAVMAAFMQACGFSAQS 124 (128)
T ss_dssp ----S--EEEE--TT-S--THHHHHHHHHHHT-EE-S
T ss_pred C---CCcEEEEecCCCcccchHHHHHHHHHcCccccC
Confidence 4 466665553 222 25799999997654
|
It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A. |
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=13 Score=37.30 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=54.8
Q ss_pred EEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 234 GMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 234 eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
.+-+.+ +|+ ..++.+.++|++.|.+=+|+..+ +..+.++.+|++|++...=+=++-|- +
T Consensus 63 DvHLMv~~P~----~~i~~~~~aGad~it~H~Ea~~~-------------~~~~~i~~Ik~~G~kaGlalnP~T~~---~ 122 (229)
T PRK09722 63 DVHLMVTDPQ----DYIDQLADAGADFITLHPETING-------------QAFRLIDEIRRAGMKVGLVLNPETPV---E 122 (229)
T ss_pred EEEEEecCHH----HHHHHHHHcCCCEEEECccCCcc-------------hHHHHHHHHHHcCCCEEEEeCCCCCH---H
Confidence 444553 675 78999999999999999997532 24467889999999988777655443 3
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCCh
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~ 344 (564)
. +..++. .+|.|-+. ++.||..
T Consensus 123 ~----l~~~l~----~vD~VLvM--sV~PGf~ 144 (229)
T PRK09722 123 S----IKYYIH----LLDKITVM--TVDPGFA 144 (229)
T ss_pred H----HHHHHH----hcCEEEEE--EEcCCCc
Confidence 2 223321 15766554 5677764
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=87.73 E-value=8.6 Score=38.02 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=73.4
Q ss_pred EEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 234 GMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 234 eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
.+-+.+ +|+ ..++.+.++|++.|++=+|+.. +..++++.+|+.|.+...=+=++-|-+..+
T Consensus 62 DvHLMv~~P~----~~i~~~~~~gad~It~H~Ea~~--------------~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~ 123 (210)
T PRK08005 62 SFHLMVSSPQ----RWLPWLAAIRPGWIFIHAESVQ--------------NPSEILADIRAIGAKAGLALNPATPLLPYR 123 (210)
T ss_pred EEEeccCCHH----HHHHHHHHhCCCEEEEcccCcc--------------CHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 344443 665 6899999999999999999651 345688899999999887776664433222
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHH
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVT 392 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~ 392 (564)
.++. .+|.|-+ +++.||..=.. | ..+..+.+.++.++.+.. -++ +.
T Consensus 124 -------~~l~----~vD~Vlv--MsV~PGf~GQ~------f----~~~~~~KI~~l~~~~~~~----~I~-------VD 169 (210)
T PRK08005 124 -------YLAL----QLDALMI--MTSEPDGRGQQ------F----IAAMCEKVSQSREHFPAA----ECW-------AD 169 (210)
T ss_pred -------HHHH----hcCEEEE--EEecCCCccce------e----cHHHHHHHHHHHHhcccC----CEE-------EE
Confidence 2221 2576655 46788875221 2 234455555555555431 133 33
Q ss_pred hCCCcchHHHHHH
Q 008466 393 SGVEKGNLRELAL 405 (564)
Q Consensus 393 ~G~~~~~~~~~a~ 405 (564)
.|+...++.+++.
T Consensus 170 GGI~~~~i~~l~~ 182 (210)
T PRK08005 170 GGITLRAARLLAA 182 (210)
T ss_pred CCCCHHHHHHHHH
Confidence 4566666665553
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=87.06 E-value=4.1 Score=44.85 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=61.9
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCC-CHHHHHHHHHHHhc
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNV-GVERDLESFREFFE 323 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPge-t~e~~~~t~~~~~~ 323 (564)
+.+.|+...++|.+.|.+|.++++-+.. ....+.+++.++++.+++.|.++.+ .+.-+|.+ ..+.+.+.++.+.
T Consensus 12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~---~~~f~~edl~eav~~ah~~g~kvyv-t~n~i~~e~el~~~~~~l~~l~- 86 (443)
T PRK15452 12 TLKNMRYAFAYGADAVYAGQPRYSLRVR---NNEFNHENLALGINEAHALGKKFYV-VVNIAPHNAKLKTFIRDLEPVI- 86 (443)
T ss_pred CHHHHHHHHHCCCCEEEECCCccchhhh---ccCCCHHHHHHHHHHHHHcCCEEEE-EecCcCCHHHHHHHHHHHHHHH-
Confidence 6789999999999999999999887652 3567889999999999999988654 23344554 3344555555554
Q ss_pred CCCCCCCeEEEe
Q 008466 324 SPLFRADGLKIY 335 (564)
Q Consensus 324 ~~~l~pd~i~iy 335 (564)
.+++|.|-+.
T Consensus 87 --~~gvDgvIV~ 96 (443)
T PRK15452 87 --AMKPDALIMS 96 (443)
T ss_pred --hCCCCEEEEc
Confidence 4667776554
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=87.05 E-value=8.1 Score=38.74 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=53.1
Q ss_pred EEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCC--cEEEEEecCCCCCC
Q 008466 234 GMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGF--KVVAHMMPDLPNVG 310 (564)
Q Consensus 234 eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~--~v~~~lI~GLPget 310 (564)
.+-+.+ +|+ +.++.+.++|++.|++=+|+. .+..++++.+|+.|. +...-+=++ ..
T Consensus 72 DvHLMv~~P~----~~i~~~~~aGad~It~H~Ea~--------------~~~~~~l~~Ik~~g~~~kaGlalnP~---Tp 130 (228)
T PRK08091 72 DVHLMVRDQF----EVAKACVAAGADIVTLQVEQT--------------HDLALTIEWLAKQKTTVLIGLCLCPE---TP 130 (228)
T ss_pred EEEeccCCHH----HHHHHHHHhCCCEEEEcccCc--------------ccHHHHHHHHHHCCCCceEEEEECCC---CC
Confidence 444443 664 789999999999999999974 135678889999999 655555444 33
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCCh
Q 008466 311 VERDLESFREFFESPLFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 311 ~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~ 344 (564)
.+.+ ..++. .+|.|-+. ++.||..
T Consensus 131 ~~~i----~~~l~----~vD~VLiM--tV~PGfg 154 (228)
T PRK08091 131 ISLL----EPYLD----QIDLIQIL--TLDPRTG 154 (228)
T ss_pred HHHH----HHHHh----hcCEEEEE--EECCCCC
Confidence 4433 23321 15776664 6677753
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.56 E-value=0.89 Score=52.70 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=41.0
Q ss_pred ccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC--CCcHHHHhhCCCeeeC
Q 008466 501 VHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG--VGTRHYYRKLGYELEG 556 (564)
Q Consensus 501 v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~--~~a~~fY~klGy~~~g 556 (564)
||.+ +|++|||++|++.+.++|++ |++-+.+.-+ ....+|..|.||.+..
T Consensus 539 vhPe----~q~~GiGsrlL~~l~~~a~~--~~DwlgvsFG~t~~L~rFW~rnGF~pVh 590 (758)
T COG1444 539 VHPE----LQRMGIGSRLLALLIEEARK--GLDWLGVSFGYTEELLRFWLRNGFVPVH 590 (758)
T ss_pred eCHH----HHhcCHHHHHHHHHHHHHhc--CCCEEeeccCCCHHHHHHHHHcCeEEEE
Confidence 6766 99999999999999999984 7887766533 3458999999998843
|
|
| >COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.22 E-value=0.97 Score=47.56 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=40.7
Q ss_pred hhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCce
Q 008466 507 DKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 507 ~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~ 558 (564)
..|||+|.-++||.+.-+-.+++ |+.-..++.. ..+||+|+||+..+.|
T Consensus 80 P~~R~~G~~~~Ll~~sLre~~~k-G~p~s~L~P~--s~~iYrKfGye~asn~ 128 (389)
T COG4552 80 PTYRRRGALRALLAHSLREIARK-GYPVSALHPF--SGGIYRKFGYEYASNY 128 (389)
T ss_pred hhhccCcHHHHHHHHHHHHHHHc-CCeeEEeccC--chhhHhhccccccceE
Confidence 44999999999999999999985 9888777543 3579999999987753
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=85.79 E-value=19 Score=35.88 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~ 325 (564)
+..++.+.++|++.|++=+|+. .+..++++.+|++|++...-+=++-|-+..+ .++.
T Consensus 75 ~~~i~~~~~~gad~I~~H~Ea~--------------~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~-------~~l~-- 131 (223)
T PRK08745 75 DRIVPDFADAGATTISFHPEAS--------------RHVHRTIQLIKSHGCQAGLVLNPATPVDILD-------WVLP-- 131 (223)
T ss_pred HHHHHHHHHhCCCEEEEcccCc--------------ccHHHHHHHHHHCCCceeEEeCCCCCHHHHH-------HHHh--
Confidence 3689999999999999999973 1356788899999999887776554433322 2221
Q ss_pred CCCCCeEEEeeeeecCCCh
Q 008466 326 LFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 326 ~l~pd~i~iy~l~v~~GT~ 344 (564)
.+|.|-+ +++.||..
T Consensus 132 --~vD~Vlv--MtV~PGf~ 146 (223)
T PRK08745 132 --ELDLVLV--MSVNPGFG 146 (223)
T ss_pred --hcCEEEE--EEECCCCC
Confidence 2576655 46778864
|
|
| >PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional | Back alignment and domain information |
|---|
Probab=84.77 E-value=2.8 Score=39.28 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=17.5
Q ss_pred EEE-EEcCCCCCC-CHHHHHHHHHHHHHHh
Q 008466 183 EFI-LMGGTFMSL-PADYRDYFIRNLHDAL 210 (564)
Q Consensus 183 e~I-~~GGTpt~l-~~~~l~~ll~~l~~~~ 210 (564)
..| |.||.|+.- ..+.+.++++.+++.+
T Consensus 67 ~gvt~sGGEPl~~~~~~~l~~l~~~~k~~~ 96 (154)
T PRK11121 67 QGLSLSGGDPLHPQNVPDILKLVQRVKAEC 96 (154)
T ss_pred CcEEEECCCccchhhHHHHHHHHHHHHHHC
Confidence 445 789999642 2356666667666554
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.79 E-value=28 Score=36.10 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCC---cEEEEEecCCCCCCHHHHHHHHHHHh
Q 008466 283 AVADCFCLAKDAGF---KVVAHMMPDLPNVGVERDLESFREFF 322 (564)
Q Consensus 283 ~~~~ai~~lr~~G~---~v~~~lI~GLPget~e~~~~t~~~~~ 322 (564)
.+.+.++.+.++|+ ++..|--+|+ +.+.+..++.++.+-
T Consensus 164 ~l~~~i~~a~~~GI~~~~IilDPGiGF-~k~~~~n~~ll~~l~ 205 (282)
T PRK11613 164 YFIEQIARCEAAGIAKEKLLLDPGFGF-GKNLSHNYQLLARLA 205 (282)
T ss_pred HHHHHHHHHHHcCCChhhEEEeCCCCc-CCCHHHHHHHHHHHH
Confidence 44577788999999 5788887888 677776666666553
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.64 E-value=80 Score=35.31 Aligned_cols=119 Identities=14% Similarity=0.137 Sum_probs=79.2
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCC
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVG 310 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget 310 (564)
..+..-+|+- .+.++...++|+.+|.+-+=+-+-.....+++. ...+.+.++++.+++.|+.+.++++-+ +-.+
T Consensus 66 ~~i~a~~r~~---~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~-~r~~ 141 (488)
T PRK09389 66 AEICSFARAV---KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDA-SRAD 141 (488)
T ss_pred cEEEeecccC---HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeC-CCCC
Confidence 3555555542 667999999999999998844433334455543 344677788889999999988887754 4556
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 311 VERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 311 ~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++-+.+.++.+. +.+++.|.+ +.|- | ..++++..+++..+....+
T Consensus 142 ~~~l~~~~~~~~---~~Ga~~i~l------~DTv-------G---~~~P~~~~~lv~~l~~~~~ 186 (488)
T PRK09389 142 LDFLKELYKAGI---EAGADRICF------CDTV-------G---ILTPEKTYELFKRLSELVK 186 (488)
T ss_pred HHHHHHHHHHHH---hCCCCEEEE------ecCC-------C---CcCHHHHHHHHHHHHhhcC
Confidence 776777777776 467887654 3331 1 2456677777766666543
|
|
| >TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase | Back alignment and domain information |
|---|
Probab=83.61 E-value=2 Score=43.75 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCc-----------eEeeecC
Q 008466 513 GYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGP-----------YMVKYLE 564 (564)
Q Consensus 513 GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~-----------~m~K~l~ 564 (564)
|-...|++.+++.|++ +|+.+|.+.........|++.||..+|. +|+|.|+
T Consensus 21 ~~~~~~~~~~~~~a~~-~~~~ki~~~~~~~~~~~~~~~g~~~e~~i~~~f~g~~~~~~~~~~~ 82 (266)
T TIGR03827 21 NDVEALIPDLDALAKK-EGYTKIIAKVPGSDKPLFEERGYLEEAKIPGYFNGHDAYFMSKYLD 82 (266)
T ss_pred ccHHHHHHHHHHHHHH-cCCcEEEEEccHHHHHHHHHCCCeEEEecccccCCCceEEEEEcCc
Confidence 4467899999999999 5999998888778899999999999862 7887663
|
Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=83.56 E-value=26 Score=34.90 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=56.1
Q ss_pred EEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 234 GMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 234 eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
.+-+.+ +|+ ..++.+.++|++.|++=+|+. .+..+.++.+|+.|++.+.-+=++-|-+..+
T Consensus 62 dvHLMv~~p~----~~i~~~~~~gad~i~~H~Ea~--------------~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 62 DVHLMVKPVD----RIIPDFAKAGASMITFHVEAS--------------EHVDRTLQLIKEHGCQAGVVLNPATPLHHLE 123 (220)
T ss_pred EEEeccCCHH----HHHHHHHHhCCCEEEEcccCc--------------ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 344443 664 789999999999999999974 2356788899999999887776655433322
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChh
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGL 345 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L 345 (564)
.++. .+|.|-+. ++.||+.-
T Consensus 124 -------~~l~----~~D~vlvM--tV~PGfgG 143 (220)
T PRK08883 124 -------YIMD----KVDLILLM--SVNPGFGG 143 (220)
T ss_pred -------HHHH----hCCeEEEE--EecCCCCC
Confidence 2221 25777664 67888753
|
|
| >COG1964 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.80 E-value=44 Score=36.63 Aligned_cols=110 Identities=10% Similarity=0.035 Sum_probs=73.1
Q ss_pred EEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC--CHHHHHHHHHcCCCe
Q 008466 183 EFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC--LGPHLRQMLSYGCTR 259 (564)
Q Consensus 183 e~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i--~~e~L~~L~~~G~~r 259 (564)
..| |.||.||.. +.+-++++...+.-- .-+++.||--.+ +++..+.|+++|.+.
T Consensus 112 ~aIq~tGGEPTvr--~DL~eiv~~a~e~g~---------------------~hVqinTnGirlA~~~~~~~~l~~ag~~t 168 (475)
T COG1964 112 NAVQFTGGEPTLR--DDLIEIIKIAREEGY---------------------DHVQLNTNGIRLAFDPEYVKKLREAGVNT 168 (475)
T ss_pred ceeEecCCCccch--hhHHHHHHHHhhcCc---------------------cEEEEccCceeeccCHHHHHHHHhcCCcE
Confidence 445 789999874 345556665554221 234555543222 578999999999999
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc-EE--EEEecCCCCCCHHHHHHHHHHHhc
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK-VV--AHMMPDLPNVGVERDLESFREFFE 323 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~-v~--~~lI~GLPget~e~~~~t~~~~~~ 323 (564)
|-+-....+++.+..+ .-++-.+++.++++|+. ++ --++=|+- ....-..+++..+
T Consensus 169 vYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~rgvN---d~~lG~iirfa~~ 227 (475)
T COG1964 169 VYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIRGVN---DHELGAIIRFALN 227 (475)
T ss_pred EEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhcccC---hHHHHHHHHHHHh
Confidence 9999999999886665 45666799999999987 43 25555552 2223344555543
|
|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=82.20 E-value=23 Score=36.12 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCC---C---CCHHH---HHHHHHHHHHHhcCCCc------hhhHHHhhh
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFILMGGTFM---S---LPADY---RDYFIRNLHDALSGHTS------ANVEEAVTY 224 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt---~---l~~~~---l~~ll~~l~~~~~~~~~------~~l~e~~~~ 224 (564)
-.+.+++.+..++.+.| ...|=.||..| . -+.+. +.++++.+.+.++...+ .-+++|++.
T Consensus 21 ~~~~~~~~~a~~~~~~G-----AdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~~ 95 (257)
T cd00739 21 LSLDKAVAHAEKMIAEG-----ADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAALEA 95 (257)
T ss_pred CCHHHHHHHHHHHHHCC-----CCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHHh
Confidence 44677777777777877 55663444222 1 12333 33456666554331111 124555543
Q ss_pred cccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC-----CHHHHHHHHHHHHHcCC---
Q 008466 225 SEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH-----TVAAVADCFCLAKDAGF--- 296 (564)
Q Consensus 225 ~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh-----t~~~~~~ai~~lr~~G~--- 296 (564)
. ..+=-.+..-+ .+++.+..++++|+.-|-+-.+..+..... ...-. -.+.+.+.++.++++|+
T Consensus 96 G-----~~iINdisg~~--~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~ 167 (257)
T cd00739 96 G-----ADIINDVSGGS--DDPAMLEVAAEYGAPLVLMHMRGTPKTMQE-NPYYEDVVDEVLSFLEARLEAAESAGVARN 167 (257)
T ss_pred C-----CCEEEeCCCCC--CChHHHHHHHHcCCCEEEECCCCCCccccc-CCCcccHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 1 01111122112 125677777778776666544322211100 00000 11335566777889999
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHHHh
Q 008466 297 KVVAHMMPDLPNVGVERDLESFREFF 322 (564)
Q Consensus 297 ~v~~~lI~GLPget~e~~~~t~~~~~ 322 (564)
++..|-.+|+ +.+.+...+.++.+.
T Consensus 168 ~Ii~DPg~gf-~ks~~~~~~~l~~i~ 192 (257)
T cd00739 168 RIILDPGIGF-GKTPEHNLELLRRLD 192 (257)
T ss_pred HEEEecCCCc-ccCHHHHHHHHHHHH
Confidence 5788988886 555665566665553
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.13 E-value=5.1 Score=39.62 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=15.1
Q ss_pred EEE-EEcCCCCCCCHHHHHHHHHHHHH
Q 008466 183 EFI-LMGGTFMSLPADYRDYFIRNLHD 208 (564)
Q Consensus 183 e~I-~~GGTpt~l~~~~l~~ll~~l~~ 208 (564)
..| +.||.| +-...+..|++.+++
T Consensus 73 ~~V~lTGGEP--~~~~~l~~Ll~~l~~ 97 (212)
T COG0602 73 RGVSLTGGEP--LLQPNLLELLELLKR 97 (212)
T ss_pred ceEEEeCCcC--CCcccHHHHHHHHHh
Confidence 355 789999 333345566776664
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=82.10 E-value=9.6 Score=39.35 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEe-cCCC-CCCHHHHHHHHHHH
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMM-PDLP-NVGVERDLESFREF 321 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI-~GLP-get~e~~~~t~~~~ 321 (564)
...++..+++|+++|.+.+=+.+....+.+|+. ...+++.++++.+++.|+.+.+.++ +|-| --+++.+.+.++.+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~ 156 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFL 156 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 457999999999999999944444445566664 3456778899999999999887665 3333 34677777777777
Q ss_pred hcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 322 FESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 322 ~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
. +.+++.|.+- .|- | ..++++..+++..++..+|
T Consensus 157 ~---~~G~~~i~l~------DT~-------G---~~~P~~v~~l~~~l~~~~~ 190 (280)
T cd07945 157 S---DLPIKRIMLP------DTL-------G---ILSPFETYTYISDMVKRYP 190 (280)
T ss_pred H---HcCCCEEEec------CCC-------C---CCCHHHHHHHHHHHHhhCC
Confidence 6 4678876543 231 1 2456777777777777665
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain | Back alignment and domain information |
|---|
Probab=81.90 E-value=11 Score=33.28 Aligned_cols=68 Identities=21% Similarity=0.139 Sum_probs=47.2
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
+...+|+.+.+ +.+||+.-.-... . ++|.-..+...+ |++.+.|..|+.++-++|.
T Consensus 69 ~~~~l~~~~~~---g~~va~~~~~~~~-----------~------~~~~~~~g~~~~----~~~~~~~~~l~~~~i~~a~ 124 (142)
T PF13480_consen 69 GRLRLFVLYDG---GEPVAFALGFRHG-----------G------TLYYWYGGYDPE----YRKYSPGRLLLWEAIRWAI 124 (142)
T ss_pred CCEEEEEEEEC---CEEEEEEEEEEEC-----------C------EEEEEEEEECHh----hHhCCHHHHHHHHHHHHHH
Confidence 44566777776 7788887554332 1 233333334443 8999999999999999999
Q ss_pred hcCCCcEEEEecC
Q 008466 528 GEHRSRKMAVISG 540 (564)
Q Consensus 528 ~~~g~~~i~~~s~ 540 (564)
+ +|++.+.+..+
T Consensus 125 ~-~g~~~~d~g~g 136 (142)
T PF13480_consen 125 E-RGLRYFDFGGG 136 (142)
T ss_pred H-CCCCEEEECCC
Confidence 9 49999877543
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=81.76 E-value=4.2 Score=39.90 Aligned_cols=81 Identities=16% Similarity=0.313 Sum_probs=54.3
Q ss_pred EEEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCH
Q 008466 233 IGMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGV 311 (564)
Q Consensus 233 ~eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~ 311 (564)
..+-+.+ +|+ ..++.+.++|+++|++=+|+.+ +..+.++.+|++|+++..-+-++-|-+.
T Consensus 60 ~DvHLMv~~P~----~~i~~~~~~g~~~i~~H~E~~~--------------~~~~~i~~ik~~g~k~GialnP~T~~~~- 120 (201)
T PF00834_consen 60 LDVHLMVENPE----RYIEEFAEAGADYITFHAEATE--------------DPKETIKYIKEAGIKAGIALNPETPVEE- 120 (201)
T ss_dssp EEEEEESSSGG----GHHHHHHHHT-SEEEEEGGGTT--------------THHHHHHHHHHTTSEEEEEE-TTS-GGG-
T ss_pred EEEEeeeccHH----HHHHHHHhcCCCEEEEcccchh--------------CHHHHHHHHHHhCCCEEEEEECCCCchH-
Confidence 4455554 775 6999999999999999998653 3456788899999998887766655433
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEeeeeecCCCh
Q 008466 312 ERDLESFREFFESPLFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 312 e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~ 344 (564)
++.++. .+|.|-+. ++.||..
T Consensus 121 ------~~~~l~----~vD~VlvM--sV~PG~~ 141 (201)
T PF00834_consen 121 ------LEPYLD----QVDMVLVM--SVEPGFG 141 (201)
T ss_dssp ------GTTTGC----CSSEEEEE--SS-TTTS
T ss_pred ------HHHHhh----hcCEEEEE--EecCCCC
Confidence 334432 36877665 5677764
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 564 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-07 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 2e-06 | |
| 3t90_A | 149 | Glucose-6-phosphate acetyltransferase 1; GNAT fold | 3e-06 | |
| 4ag7_A | 165 | Glucosamine-6-phosphate N-acetyltransferase; HET: | 1e-05 | |
| 3t9y_A | 150 | Acetyltransferase, GNAT family; PSI-biology, struc | 7e-05 | |
| 2aj6_A | 159 | Hypothetical protein MW0638; structural genomics, | 8e-05 | |
| 1kux_A | 207 | Aralkylamine, serotonin N-acetyltransferase; enzym | 2e-04 | |
| 2vez_A | 190 | Putative glucosamine 6-phosphate acetyltransferase | 3e-04 | |
| 1ufh_A | 180 | YYCN protein; alpha and beta, fold, acetyltransfer | 3e-04 | |
| 1cjw_A | 166 | Protein (serotonin N-acetyltransferase); HET: COT; | 4e-04 | |
| 1on0_A | 158 | YYCN protein; structural genomics, alpha-beta prot | 5e-04 | |
| 2o28_A | 184 | Glucosamine 6-phosphate N-acetyltransferase; struc | 7e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 3e-09
Identities = 65/467 (13%), Positives = 118/467 (25%), Gaps = 146/467 (31%)
Query: 136 DFEYSTQSYTGYE---PTSMRAIRARYN-PYVQARSRIDQLKRLGHSVDKVEFILMGGTF 191
DFE Y Y+ A ++ VQ D K + S ++++ I+M
Sbjct: 8 DFETGEHQYQ-YKDILSVFEDAFVDNFDCKDVQ-----DMPKSI-LSKEEIDHIIMSKD- 59
Query: 192 MSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDY-------- 243
L L V++ V R +Y
Sbjct: 60 -------AVSGTLRLFWTLLSKQEEMVQKFVEEVL-------------RINYKFLMSPIK 99
Query: 244 --CLGPHLRQMLSYGCTRLEIGVQSTYEDVA----RDTNRGHTVAAVADCFCLAKDAGFK 297
P + Y R Y D + +R + + A
Sbjct: 100 TEQRQPSMM-TRMYIEQR-----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN- 152
Query: 298 VVAHMMPDLPNVG---------VERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYEL 348
V+ + G V + + +F
Sbjct: 153 VLIDGVL-----GSGKTWVALDVCLS-YKVQCKMDFKIF--------------------- 185
Query: 349 W-KTGRYRNYPPEQLVDIVARILA-MVPPWTRVYRVQRDIPMPLVTSGVEKGNLREL--- 403
W + PE +++++ ++L + P WT +I + + + + LR L
Sbjct: 186 WLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS---IQAELRRLLKS 240
Query: 404 -----ALARMDD---------LGLKCRD-VRTREAGIQDIHHQIKPEEVELVRRD--YVA 446
L + + L C+ + TR + D + L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 447 NEGWETFLSYEDTR-QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGRE 505
+E L Y D R QD L N P + I +
Sbjct: 301 DEVKSLLLKYLDCRPQD-----LPREVLTTN---PRRLS--IIAESIR------------ 338
Query: 506 ADKLQH-QGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLG 551
D L + + ++ I + V+ R + +L
Sbjct: 339 -DGLATWDNWKHVNCDKLTTI-----IESSLNVLEPAEYRKMFDRLS 379
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 4e-07
Identities = 83/533 (15%), Positives = 164/533 (30%), Gaps = 142/533 (26%)
Query: 64 RKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASG--------IAVVAVMSKPHR 115
KY ++R +++ R+ALL +LR G +A+ +S +
Sbjct: 127 AKYNVSRLQPYLKL--------RQALL-ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 116 CP---HI--ATTGNICVYCPGGPDSDFEYSTQSYTGYEPT------SMRAIRARYNPYVQ 164
C I N P++ E + +P I+ R +
Sbjct: 178 CKMDFKIFWLNLKNCNS-----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 165 ARSRIDQLKRLGHS---VDKVE-------F-----ILMGGTFMSLPADYRDYFIRNLHDA 209
R+ + K + + V+ F IL+ T R + + D
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-TT--------RF---KQVTDF 280
Query: 210 LSGHTSANV---EEAVTYSEHGA----TKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEI 262
LS T+ ++ ++T + K + + P R++L+ +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--------REVLT--TNPRRL 330
Query: 263 GV--QSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLES--- 317
+ +S + +A N +K H+ D +E L
Sbjct: 331 SIIAESIRDGLATWDN-------------------WK---HVNCDKLTTIIESSLNVLEP 368
Query: 318 --FREFFES-PLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVD-IVARILAMV 373
+R+ F+ +F I PT++ L +W + +V+ + L
Sbjct: 369 AEYRKMFDRLSVFPPS-AHI-PTIL-----LSLIWFDVIKSD--VMVVVNKLHKYSLVEK 419
Query: 374 PPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQD------ 427
P + I + L + L + + K D D
Sbjct: 420 QPKESTISIP-SIYLELKVKLENEYALHRSIVDHYNI--PKTFDSDDLIPPYLDQYFYSH 476
Query: 428 I-HH--QIKP-EEVELVRRDYVANEGW-ETFLSYEDT----RQDILVGLLRLRKCGRNVT 478
I HH I+ E + L R ++ + + E + ++ T IL L +L+ +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 479 --CPELMGK-CSIVRELHVYGTAVPVHGREADKLQH--QGYGTLLMEEAERIA 526
P+ +I+ L + + + D L+ + EEA +
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENL-ICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Length = 457 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA 294
++IE P L + + G RL +GVQ ++V R NR + A++
Sbjct: 142 ISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI 201
Query: 295 GFK 297
GF
Sbjct: 202 GFT 204
|
| >3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac biosynthesis, alpha/beta protein; HET: EPE; 1.50A {Arabidopsis thaliana} Length = 149 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 19/161 (11%), Positives = 43/161 (26%), Gaps = 28/161 (17%)
Query: 417 DVRTREAGIQDIH-------------HQIKPEEVELVRRDYVANEGWETFLSYEDTRQDI 463
+ R+ I D + EE + + + E+
Sbjct: 4 TFKIRKLEISDKRKGFIELLGQLTVTGSVTDEEFDRRFEEIRSYGDDHVICVIEEETSGK 63
Query: 464 LVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAE 523
+ + + + + C H+ V + + + G ++E
Sbjct: 64 IAATGSV------MIEKKFLRNCGKAG--HIEDVVV------DSRFRGKQLGKKVVEFLM 109
Query: 524 RIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564
K+ + V + +Y K G + M KY +
Sbjct: 110 DHC-KSMGCYKVILDCSVENKVFYEKCGMSNKSIQMSKYFD 149
|
| >4ag7_A Glucosamine-6-phosphate N-acetyltransferase; HET: COA; 1.55A {Caenorhabditis elegans} PDB: 4ag9_A* Length = 165 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-05
Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 28/159 (17%)
Query: 417 DVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSY-------------EDTRQDI 463
+ + R D +L + E +E ED+
Sbjct: 21 NFKVRPLAKDDFSKGYVDLLSQLTSVGNLDQEAFEKRFEAMRTSVPNYHIVVIEDSNSQK 80
Query: 464 LVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAE 523
+V V + + V V +++ Q G +L++
Sbjct: 81 VVA------SASLVVEMKFIHGAGSRG--RVEDVVV------DTEMRRQKLGAVLLKTLV 126
Query: 524 RIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKY 562
+ K+++ +Y + G++ + +M +
Sbjct: 127 SLGK-SLGVYKISLECVPELLPFYSQFGFQDDCNFMTQR 164
|
| >3t9y_A Acetyltransferase, GNAT family; PSI-biology, structural genomics, midwest center for structu genomics, MCSG; HET: PGE; 2.00A {Staphylococcus aureus} Length = 150 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 7e-05
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 510 QHQGYGTLLMEEAERIALGEHRSRKMAVISG-----VGTRHYYRKLGYELEGPYMVKYL 563
+ +GYG L+ ++E + + + + SG + Y GY K L
Sbjct: 93 RKKGYGKRLLADSEEFSK-RLNCKAITLNSGNRNERLSAHKLYSDNGYVSNTSGFTKQL 150
|
| >2aj6_A Hypothetical protein MW0638; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.63A {Staphylococcus aureus subsp} SCOP: d.108.1.1 Length = 159 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 8e-05
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 510 QHQGYGTLLMEEAERIALGEHRSRKMAVISGVGT-----RHYYRKLGYELEGPYMVKYLE 564
+ G T L E+ A + R + + + + LGY++ M K ++
Sbjct: 103 RKLGIATQLKIALEKWAKTMNAKR---ISNTIHKNNLPMISLNKDLGYQVSHVKMYKDID 159
|
| >1kux_A Aralkylamine, serotonin N-acetyltransferase; enzyme-inhibitor complex, bisubstrate analog, alternate conformations; HET: CA3; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB: 1kuv_A* 1kuy_A* 1l0c_A* 1ib1_E* Length = 207 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 510 QHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKY 562
+ QG G++L+ + R+ ++ +Y++ G+ GP +
Sbjct: 131 RQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPAGPCAIVV 183
|
| >2vez_A Putative glucosamine 6-phosphate acetyltransferase; acyltransferase; HET: ACO G6P; 1.45A {Aspergillus fumigatus} PDB: 2vxk_A* Length = 190 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 26/158 (16%), Positives = 47/158 (29%), Gaps = 27/158 (17%)
Query: 417 DVRTREAGIQDIHHQIK------------PEEVELVRRDYVANEGWETFLSYEDTRQDIL 464
D R D EE R +++ E +L + +
Sbjct: 47 DYTIRPLCRSDYKRGYLDVLRVLTTVGDINEEQWNSRYEWIRARSDEYYLLVVCDGEGRI 106
Query: 465 VGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAER 524
VG G V + + +V H+ AV Q + G +++ +
Sbjct: 107 VG------TGSLVVERKFIHSLGMVG--HIEDIAV------EKGQQGKKLGLRIIQALDY 152
Query: 525 IALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKY 562
+A + K + +Y K G++ G M Y
Sbjct: 153 VAE-KVGCYKTILDCSEANEGFYIKCGFKRAGLEMAHY 189
|
| >1ufh_A YYCN protein; alpha and beta, fold, acetyltransferase, structural genomics, PSI, protein structure initiative; 2.20A {Bacillus subtilis subsp} SCOP: d.108.1.1 Length = 180 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 490 RELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSR-KMAVISG-VGTRHYY 547
+E +Y + + + +GY + ++ A + + V + R Y
Sbjct: 111 QEAFIYDFGL------YEPYRGKGYAKQALAALDQAARSMGIRKLSLHVFAHNQTARKLY 164
Query: 548 RKLGYELEGPYMVKYL 563
+ G++ M K L
Sbjct: 165 EQTGFQETDVVMSKKL 180
|
| >1cjw_A Protein (serotonin N-acetyltransferase); HET: COT; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB: 1b6b_A Length = 166 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGK-CSIVRELHVYGTAV-PVHGREADK 508
E L + + LV + E + H++ AV
Sbjct: 50 ELSLGWFV--EGRLVAFIIGSLWDEERLTQESLALHRPRGHSAHLHALAVHRSF------ 101
Query: 509 LQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGP 557
+ QG G++L+ + R+ ++ +Y++ G+ GP
Sbjct: 102 -RQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPAGP 149
|
| >1on0_A YYCN protein; structural genomics, alpha-beta protein with anti-parallel B strands, PSI, protein structure initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1 Length = 158 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 490 RELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSR-KMAVISG-VGTRHYY 547
+E +Y + + + +GY + ++ A + + V + R Y
Sbjct: 87 QEAFIYDFGL------YEPYRGKGYAKQALAALDQAARSMGIRKLSLHVFAHNQTARKLY 140
Query: 548 RKLGYELEGPYMVKYL 563
+ G++ M K L
Sbjct: 141 EQTGFQETDVVMSKKL 156
|
| >2o28_A Glucosamine 6-phosphate N-acetyltransferase; structural genomics, structural genomics consortium, SGC; HET: 16G COA; 1.80A {Homo sapiens} PDB: 2huz_A* 3cxq_A* 3cxs_A 3cxp_A Length = 184 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 7e-04
Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 28/159 (17%)
Query: 417 DVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSY------------EDTRQDIL 464
+ R D++ +L V+ E + + ED +
Sbjct: 38 GLVLRPLCTADLNRGFFKVLGQLTETGVVSPEQFMKSFEHMKKSGDYYVTVVEDVTLGQI 97
Query: 465 VGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAER 524
V L + + C+ + + D+ + + G LL+
Sbjct: 98 VATATLI------IEHKFIHSCAKRGRVEDVVVS--------DECRGKQLGKLLLSTLTL 143
Query: 525 IALGEHRSRKMAVISGVGTRHYYRKLGYELEGP-YMVKY 562
++ + K+ + +Y+K GY + YM +
Sbjct: 144 LSK-KLNCYKITLECLPQNVGFYKKFGYTVSEENYMCRR 181
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 564 | |||
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 100.0 | |
| 2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural ge | 99.9 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 99.87 | |
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 99.85 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 99.84 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 99.48 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 99.45 | |
| 2yx0_A | 342 | Radical SAM enzyme; predicted tRNA modification en | 99.4 | |
| 2q0y_A | 153 | GCN5-related N-acetyltransferase; YP_295895.1, ace | 99.27 | |
| 1z4e_A | 153 | Transcriptional regulator; nysgxrc target T2017, G | 99.22 | |
| 4evy_A | 166 | Aminoglycoside N(6')-acetyltransferase type 1; cen | 99.18 | |
| 2jdc_A | 146 | Glyphosate N-acetyltransferase; GNAT; HET: CAO; 1. | 99.14 | |
| 2dxq_A | 150 | AGR_C_4057P, acetyltransferase; structural genomic | 99.12 | |
| 3i3g_A | 161 | N-acetyltransferase; malaria, structural genomics, | 99.11 | |
| 4h89_A | 173 | GCN5-related N-acetyltransferase; N-acyltransferas | 99.1 | |
| 3mgd_A | 157 | Predicted acetyltransferase; structural genomics, | 99.09 | |
| 4ag7_A | 165 | Glucosamine-6-phosphate N-acetyltransferase; HET: | 99.08 | |
| 2pdo_A | 144 | Acetyltransferase YPEA; alpha-beta-alpha sandwich, | 99.07 | |
| 3jvn_A | 166 | Acetyltransferase; alpha-beta protein, structural | 99.07 | |
| 3t9y_A | 150 | Acetyltransferase, GNAT family; PSI-biology, struc | 99.07 | |
| 1tiq_A | 180 | Protease synthase and sporulation negative regulat | 99.06 | |
| 3efa_A | 147 | Putative acetyltransferase; structural genom 2, pr | 99.05 | |
| 1wwz_A | 159 | Hypothetical protein PH1933; structural genomics, | 99.05 | |
| 3t90_A | 149 | Glucose-6-phosphate acetyltransferase 1; GNAT fold | 99.04 | |
| 1on0_A | 158 | YYCN protein; structural genomics, alpha-beta prot | 99.01 | |
| 1s3z_A | 165 | Aminoglycoside 6'-N-acetyltransferase; GNAT, amino | 99.0 | |
| 3gy9_A | 150 | GCN5-related N-acetyltransferase; YP_001815201.1, | 99.0 | |
| 1xeb_A | 150 | Hypothetical protein PA0115; midwest center for st | 99.0 | |
| 3fyn_A | 176 | Integron gene cassette protein HFX_CASS3; integron | 98.99 | |
| 1i12_A | 160 | Glucosamine-phosphate N-acetyltransferase; GNAT, a | 98.98 | |
| 3lod_A | 162 | Putative acyl-COA N-acyltransferase; structural ge | 98.97 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 98.97 | |
| 2ae6_A | 166 | Acetyltransferase, GNAT family; GCN5-related N-ace | 98.97 | |
| 2x7b_A | 168 | N-acetyltransferase SSO0209; HET: COA; 1.95A {Sulf | 98.96 | |
| 2aj6_A | 159 | Hypothetical protein MW0638; structural genomics, | 98.94 | |
| 2ge3_A | 170 | Probable acetyltransferase; structural GEN PSI, pr | 98.94 | |
| 1cjw_A | 166 | Protein (serotonin N-acetyltransferase); HET: COT; | 98.94 | |
| 1y9w_A | 140 | Acetyltransferase; structural genomics, Pro struct | 98.93 | |
| 1u6m_A | 199 | Acetyltransferase, GNAT family; structural genomic | 98.92 | |
| 3dsb_A | 157 | Putative acetyltransferase; APC60368.2, ST genomic | 98.92 | |
| 1q2y_A | 140 | Protein YJCF, similar to hypothetical proteins; GC | 98.92 | |
| 2r7h_A | 177 | Putative D-alanine N-acetyltransferase of GNAT FA; | 98.92 | |
| 2i79_A | 172 | Acetyltransferase, GNAT family; acetyl coenzyme *A | 98.91 | |
| 3pp9_A | 187 | Putative streptothricin acetyltransferase; toxin p | 98.91 | |
| 1kux_A | 207 | Aralkylamine, serotonin N-acetyltransferase; enzym | 98.9 | |
| 1vkc_A | 158 | Putative acetyl transferase; structural genomics, | 98.9 | |
| 2bei_A | 170 | Diamine acetyltransferase 2; SSAT2, BC011751, AAH1 | 98.9 | |
| 1ufh_A | 180 | YYCN protein; alpha and beta, fold, acetyltransfer | 98.9 | |
| 3fix_A | 183 | N-acetyltransferase; termoplasma acidophilum, stru | 98.89 | |
| 2z2u_A | 311 | UPF0026 protein MJ0257; metal binding protein; 2.4 | 98.89 | |
| 2g3a_A | 152 | Acetyltransferase; structural genomics, PSI, prote | 98.89 | |
| 1ghe_A | 177 | Acetyltransferase; acyl coenzyme A complex; HET: A | 98.89 | |
| 4e0a_A | 164 | BH1408 protein; structural genomics, PSI-biology, | 98.89 | |
| 1qst_A | 160 | TGCN5 histone acetyl transferase; GCN5-related N-a | 98.88 | |
| 2fiw_A | 172 | GCN5-related N-acetyltransferase:aminotransferase | 98.88 | |
| 2fl4_A | 149 | Spermine/spermidine acetyltransferase; structural | 98.88 | |
| 3e0k_A | 150 | Amino-acid acetyltransferase; N-acetylglutamate sy | 98.88 | |
| 3f8k_A | 160 | Protein acetyltransferase; GCN5-related N-acetyltr | 98.88 | |
| 3dr6_A | 174 | YNCA; acetyltransferase, csgid target, essential g | 98.86 | |
| 3kkw_A | 182 | Putative uncharacterized protein; acetyltransferas | 98.85 | |
| 2j8m_A | 172 | Acetyltransferase PA4866 from P. aeruginosa; GCN5 | 98.85 | |
| 2k5t_A | 128 | Uncharacterized protein YHHK; N-acetyl transferase | 98.85 | |
| 2i6c_A | 160 | Putative acetyltransferase; GNAT family, structura | 98.84 | |
| 1n71_A | 180 | AAC(6')-II; aminoglycoside 6'-N-acetyltransferase, | 98.84 | |
| 3s6f_A | 145 | Hypothetical acetyltransferase; acyl-COA N-acyltra | 98.84 | |
| 1z4r_A | 168 | General control of amino acid synthesis protein 5- | 98.84 | |
| 3g8w_A | 169 | Lactococcal prophage PS3 protein 05; APC61042, ace | 98.83 | |
| 2vez_A | 190 | Putative glucosamine 6-phosphate acetyltransferase | 98.82 | |
| 1yr0_A | 175 | AGR_C_1654P, phosphinothricin acetyltransferase; s | 98.82 | |
| 3tth_A | 170 | Spermidine N1-acetyltransferase; central intermedi | 98.82 | |
| 2vi7_A | 177 | Acetyltransferase PA1377; GNAT, GCN5 family, N-ace | 98.82 | |
| 3d8p_A | 163 | Acetyltransferase of GNAT family; NP_373092.1, str | 98.82 | |
| 2jlm_A | 182 | Putative phosphinothricin N-acetyltransferase; met | 98.82 | |
| 2oh1_A | 179 | Acetyltransferase, GNAT family; YP_013287.1, struc | 98.82 | |
| 1vhs_A | 175 | Similar to phosphinothricin acetyltransferase; str | 98.81 | |
| 1y7r_A | 133 | Hypothetical protein SA2161; structural genomics, | 98.81 | |
| 3i9s_A | 183 | Integron cassette protein; oyster POND, woods HOLE | 98.81 | |
| 2ob0_A | 170 | Human MAK3 homolog; acetyltransferase, structural | 98.8 | |
| 1qsm_A | 152 | HPA2 histone acetyltransferase; protein-acetyl coe | 98.8 | |
| 3eg7_A | 176 | Spermidine N1-acetyltransferase; structural genomi | 98.79 | |
| 2q7b_A | 181 | Acetyltransferase, GNAT family; NP_689019.1, struc | 98.79 | |
| 1mk4_A | 157 | Hypothetical protein YQJY; alpha-beta-alpha sandwi | 98.79 | |
| 2fe7_A | 166 | Probable N-acetyltransferase; structural genomics, | 98.78 | |
| 2eui_A | 153 | Probable acetyltransferase; dimer, structural geno | 98.78 | |
| 3eo4_A | 164 | Uncharacterized protein MJ1062; APC60792.2,MJ_1062 | 98.77 | |
| 2ozh_A | 142 | Hypothetical protein XCC2953; structural genomics, | 98.77 | |
| 2fia_A | 162 | Acetyltransferase; structural genomics, PSI, prote | 98.76 | |
| 2bue_A | 202 | AAC(6')-IB; GNAT, transferase, aminoglycoside, flu | 98.75 | |
| 1bo4_A | 168 | Protein (serratia marcescens aminoglycoside-3-N- a | 98.75 | |
| 3exn_A | 160 | Probable acetyltransferase; GCN5-related N-acetylt | 98.75 | |
| 2o28_A | 184 | Glucosamine 6-phosphate N-acetyltransferase; struc | 98.75 | |
| 3juw_A | 175 | Probable GNAT-family acetyltransferase; structural | 98.75 | |
| 1ygh_A | 164 | ADA4, protein (transcriptional activator GCN5); tr | 98.74 | |
| 2fck_A | 181 | Ribosomal-protein-serine acetyltransferase, putat; | 98.74 | |
| 2g0b_A | 198 | FEEM; N-acyl transferase, environmental DNA, prote | 98.73 | |
| 1nsl_A | 184 | Probable acetyltransferase; structural genomics, h | 98.73 | |
| 3igr_A | 184 | Ribosomal-protein-S5-alanine N-acetyltransferase; | 98.73 | |
| 2atr_A | 138 | Acetyltransferase, GNAT family; MCSG, structural g | 98.73 | |
| 1yx0_A | 159 | Hypothetical protein YSNE; NESG, GFT structral gen | 98.73 | |
| 3owc_A | 188 | Probable acetyltransferase; structural genomics, P | 98.73 | |
| 2b5g_A | 171 | Diamine acetyltransferase 1; structural genomics, | 98.72 | |
| 1s7k_A | 182 | Acetyl transferase; GNAT; 1.80A {Salmonella typhim | 98.72 | |
| 3r9f_A | 188 | MCCE protein; microcin C7, acetyltransferase, SELF | 98.72 | |
| 3ld2_A | 197 | SMU.2055, putative acetyltransferase; HET: COA; 2. | 98.72 | |
| 4fd4_A | 217 | Arylalkylamine N-acetyltransferase like 5B; GNAT; | 98.71 | |
| 1yvk_A | 163 | Hypothetical protein BSU33890; ALPHS-beta protein, | 98.7 | |
| 3h4q_A | 188 | Putative acetyltransferase; NP_371943.1, structura | 98.7 | |
| 2cnt_A | 160 | Modification of 30S ribosomal subunit protein S18; | 98.69 | |
| 2r1i_A | 172 | GCN5-related N-acetyltransferase; YP_831484.1, put | 98.69 | |
| 3qb8_A | 197 | A654L protein; GNAT N-acetyltransferase, acetyltra | 98.68 | |
| 2q04_A | 211 | Acetoin utilization protein; ZP_00540088.1, struct | 98.67 | |
| 3fbu_A | 168 | Acetyltransferase, GNAT family; structur genomics, | 98.67 | |
| 3ec4_A | 228 | Putative acetyltransferase from the GNAT family; Y | 98.67 | |
| 2gan_A | 190 | 182AA long hypothetical protein; alpha-beta protei | 98.66 | |
| 1yre_A | 197 | Hypothetical protein PA3270; APC5563, midwest cent | 98.65 | |
| 2cy2_A | 174 | TTHA1209, probable acetyltransferase; structural g | 98.65 | |
| 2d4p_A | 141 | Hypothetical protein TTHA1254; structural genomics | 98.65 | |
| 3frm_A | 254 | Uncharacterized conserved protein; APC61048, staph | 98.65 | |
| 1m4i_A | 181 | Aminoglycoside 2'-N-acetyltransferase; COA binding | 98.64 | |
| 3bln_A | 143 | Acetyltransferase GNAT family; NP_981174.1, struct | 98.63 | |
| 3f5b_A | 182 | Aminoglycoside N(6')acetyltransferase; APC60744, l | 98.63 | |
| 2ree_A | 224 | CURA; GNAT, S-acetyltransferase, decarboxylase, po | 98.61 | |
| 3d3s_A | 189 | L-2,4-diaminobutyric acid acetyltransferase; alpha | 98.6 | |
| 1y9k_A | 157 | IAA acetyltransferase; structural genomics, midwes | 98.59 | |
| 2z10_A | 194 | Ribosomal-protein-alanine acetyltransferase; alpha | 98.59 | |
| 3fnc_A | 163 | Protein LIN0611, putative acetyltransferase; GNAT, | 98.59 | |
| 2wpx_A | 339 | ORF14; transferase, acetyl transferase, antibiotic | 98.57 | |
| 3iwg_A | 276 | Acetyltransferase, GNAT family; structural genomic | 98.57 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 98.57 | |
| 1r57_A | 102 | Conserved hypothetical protein; GCN5, N-acetyltran | 98.56 | |
| 3ey5_A | 181 | Acetyltransferase-like, GNAT family; structural ge | 98.56 | |
| 2fsr_A | 195 | Acetyltransferase; alpha-beta-sandwich, structural | 98.56 | |
| 2vzy_A | 218 | RV0802C; transferase, GCN5-related N-acetyltransfe | 98.55 | |
| 2qml_A | 198 | BH2621 protein; structural genomics, joint center | 98.55 | |
| 3pzj_A | 209 | Probable acetyltransferases; MCSG, PSI-2, structur | 98.54 | |
| 4fd5_A | 222 | Arylalkylamine N-acetyltransferase 2; GNAT; 1.64A | 98.54 | |
| 3rfa_A | 404 | Ribosomal RNA large subunit methyltransferase N; r | 98.53 | |
| 2qec_A | 204 | Histone acetyltransferase HPA2 and related acetylt | 98.53 | |
| 1yk3_A | 210 | Hypothetical protein RV1347C/MT1389; acyltransfera | 98.52 | |
| 4fd7_A | 238 | Putative arylalkylamine N-acetyltransferase 7; GNA | 98.51 | |
| 3ddd_A | 288 | Putative acetyltransferase; NP_142035.1, structura | 98.49 | |
| 2pc1_A | 201 | Acetyltransferase, GNAT family; NP_688560.1, struc | 98.46 | |
| 3d2m_A | 456 | Putative acetylglutamate synthase; protein-COA-Glu | 98.43 | |
| 3g3s_A | 249 | GCN5-related N-acetyltransferase; ZP_00874857.1, a | 98.4 | |
| 3tt2_A | 330 | GCN5-related N-acetyltransferase; structural genom | 98.4 | |
| 3tcv_A | 246 | GCN5-related N-acetyltransferase; GRAM negative co | 98.37 | |
| 3te4_A | 215 | GH12636P, dopamine N acetyltransferase, isoform A; | 98.37 | |
| 3c26_A | 266 | Putative acetyltransferase TA0821; NP_394282.1, A | 98.34 | |
| 2ozg_A | 396 | GCN5-related N-acetyltransferase; YP_325469.1, ace | 98.31 | |
| 2pr1_A | 163 | Uncharacterized N-acetyltransferase YLBP; YIBP pro | 98.29 | |
| 2wpx_A | 339 | ORF14; transferase, acetyl transferase, antibiotic | 98.29 | |
| 2i00_A | 406 | Acetyltransferase, GNAT family; structural genomic | 98.29 | |
| 3can_A | 182 | Pyruvate-formate lyase-activating enzyme; structur | 98.27 | |
| 1p0h_A | 318 | Hypothetical protein RV0819; GNAT fold, acetyltran | 98.27 | |
| 3r1k_A | 428 | Enhanced intracellular surviVal protein; GNAT, ace | 98.26 | |
| 3n7z_A | 388 | Acetyltransferase, GNAT family; PSI2, MCSG, struct | 98.24 | |
| 2zw5_A | 301 | Bleomycin acetyltransferase; dimer, two domains; H | 98.23 | |
| 2kcw_A | 147 | Uncharacterized acetyltransferase YJAB; GNAT fold, | 98.19 | |
| 2hv2_A | 400 | Hypothetical protein; PSI, protein structure initi | 98.19 | |
| 2ft0_A | 235 | TDP-fucosamine acetyltransferase; GNAT fold acetyl | 98.18 | |
| 3sxn_A | 422 | Enhanced intracellular surviVal protein; GNAT fold | 98.11 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 97.97 | |
| 3tt2_A | 330 | GCN5-related N-acetyltransferase; structural genom | 97.97 | |
| 4fhd_A | 368 | Spore photoproduct lyase; partial TIM-barrel, DNA | 97.89 | |
| 1sqh_A | 312 | Hypothetical protein CG14615-PA; structural genomi | 97.82 | |
| 1ro5_A | 201 | Autoinducer synthesis protein LASI; alpha-beta-alp | 97.81 | |
| 1p0h_A | 318 | Hypothetical protein RV0819; GNAT fold, acetyltran | 97.79 | |
| 1xmt_A | 103 | Putative acetyltransferase; structural genomics, p | 97.72 | |
| 3p2h_A | 201 | AHL synthase; acyl-ACP binding, SAM binding, signa | 97.42 | |
| 1kzf_A | 230 | Acyl-homoserinelactone synthase ESAI; alpha-beta, | 97.24 | |
| 3shp_A | 176 | Putative acetyltransferase STHE_0691; PSI-biology, | 97.04 | |
| 1bob_A | 320 | HAT1, histone acetyltransferase; histone modificat | 96.8 | |
| 3dns_A | 135 | Ribosomal-protein-alanine acetyltransferase; N-ter | 96.26 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 92.1 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 90.59 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 88.54 | |
| 2p0w_A | 324 | Histone acetyltransferase type B catalytic subuni; | 87.3 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 87.11 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 85.35 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 85.26 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 84.97 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 84.08 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 82.27 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 81.86 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 81.77 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 81.53 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 81.15 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 80.82 |
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=331.23 Aligned_cols=266 Identities=18% Similarity=0.206 Sum_probs=212.1
Q ss_pred CCCCHHHHHHhCChhhHHHhhhHHhcCCCCccCCceeEEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCc
Q 008466 70 RAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEP 149 (564)
Q Consensus 70 ~~p~~~~i~~~~~~~~~~~l~~~l~~kp~rt~sgv~vvavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep 149 (564)
+||....+-..+.....+ ..|...|-.+. ++|+|||||+.+|.|| +|. +..+..
T Consensus 25 syp~~~~~~~~~~~~~~~---~~l~~~p~~~~------------~lYihIpfC~~~C~yC------~~~----~~~~~~- 78 (457)
T 1olt_A 25 SYPTALEFSEDFGEQAFL---QAVARYPERPL------------SLYVHIPFCHKLCYFC------GCN----KIVTRQ- 78 (457)
T ss_dssp SSSCGGGCBTTCCHHHHH---HHHTTCTTSCE------------EEEEEECEESSCCTTC------CSS----CEECSC-
T ss_pred CCCCHhHcCCCCCHHHHH---HHHHhCCCCce------------EEEEEcCCCCCCCCCC------CCc----eeccCC-
Confidence 577766666556554332 23333342222 2599999999999999 664 221111
Q ss_pred chHHHHhhhcchHHHHHHHHHHHH-HcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhccc
Q 008466 150 TSMRAIRARYNPYVQARSRIDQLK-RLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEH 227 (564)
Q Consensus 150 ~~~ra~~~~~~~y~~~l~r~~~l~-~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~ 227 (564)
......|.+.+.++++.. ..+.. ..+..| |+||||+.++.+++.++++.+.+.++
T Consensus 79 ------~~~~~~~~~~l~~Ei~~~~~~~~~-~~i~~i~fgGGtpt~l~~~~l~~ll~~i~~~~~---------------- 135 (457)
T 1olt_A 79 ------QHKADQYLDALEQEIVHRAPLFAG-RHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQ---------------- 135 (457)
T ss_dssp ------THHHHHHHHHHHHHHHHHGGGGTT-CCEEEEEEEESCGGGSCHHHHHHHHHHHHHHSC----------------
T ss_pred ------cchHHHHHHHHHHHHHHHHHhcCC-CceEEEEEeCCCcccCCHHHHHHHHHHHHHhCC----------------
Confidence 012356777777666533 32222 347777 68999999999999999999988764
Q ss_pred CCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCC
Q 008466 228 GATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDL 306 (564)
Q Consensus 228 ~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GL 306 (564)
.....+|++|+||++++++.++.|+++|++||+|||||+++++|+.|||+|+.+++.++++.++++||. +++|+|+||
T Consensus 136 -~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~G~~~v~~dlI~Gl 214 (457)
T 1olt_A 136 -FNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGL 214 (457)
T ss_dssp -EEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEESC
T ss_pred -CCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 124579999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCC
Q 008466 307 PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDI 386 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdi 386 (564)
||||.+++.++++.+. +++|++|++|++.+.|||++++.. .+....+++++.++++..+.+.
T Consensus 215 Pget~e~~~~tl~~~~---~l~~~~i~~y~l~~~p~t~~~~~~-~~~~~lp~~~~~~~~~~~~~~~-------------- 276 (457)
T 1olt_A 215 PKQTPESFAFTLKRVA---ELNPDRLSVFNYAHLPTIFAAQRK-IKDADLPSPQQKLDILQETIAF-------------- 276 (457)
T ss_dssp TTCCHHHHHHHHHHHH---HHCCSEEEEEECCCCTTTSGGGGG-SCGGGSCCHHHHHHHHHHHHHH--------------
T ss_pred CCCCHHHHHHHHHHHH---hcCcCEEEeecCcCCcCchhHhhc-cccCCCcCHHHHHHHHHHHHHH--------------
Confidence 9999999999999998 578999999999999999877633 2445678899999999888776
Q ss_pred ChhHHHhCCCcchHHHHHHh
Q 008466 387 PMPLVTSGVEKGNLRELALA 406 (564)
Q Consensus 387 p~~l~~~G~~~~~~~~~a~~ 406 (564)
+..+|+.+|++++||++
T Consensus 277 ---L~~~Gy~~yeis~fa~~ 293 (457)
T 1olt_A 277 ---LTQSGYQFIGMDHFARP 293 (457)
T ss_dssp ---HHHTTCEEEETTEEECT
T ss_pred ---HHHCCCeEEEechhcCC
Confidence 46789999999999865
|
| >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=213.83 Aligned_cols=206 Identities=15% Similarity=0.177 Sum_probs=138.9
Q ss_pred Cccc-cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCC
Q 008466 116 CPHI-ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSL 194 (564)
Q Consensus 116 cphI-PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l 194 (564)
|++| +.|+.+|+|| .+. . ..|. .+..+..+++.+...+.+.|. -+.++.|++++..
T Consensus 7 ~v~is~GC~~~C~fC------~~~---~-~~g~---------~r~r~~e~i~~ei~~l~~~G~----~ei~l~g~~~~~y 63 (304)
T 2qgq_A 7 YVKISDGCDRGCTFC------SIP---S-FKGS---------LRSRSIEDITREVEDLLKEGK----KEIILVAQDTTSY 63 (304)
T ss_dssp EEESBCCC-----------------------CC---------CCBCCHHHHHHHHHHHHHTTC----CEEEEECTTGGGT
T ss_pred EEEECCCCCCcCccC------Ccc---c-cCCC---------ceeeCHHHHHHHHHHHHHCCC----cEEEEEeEccccc
Confidence 5566 5677899999 432 1 1221 123445566666666766663 1333667766655
Q ss_pred CH-----HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEE-EeeCCCCCHHHHHHHHHcC--CCeEEEccCC
Q 008466 195 PA-----DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTI-ETRPDYCLGPHLRQMLSYG--CTRLEIGVQS 266 (564)
Q Consensus 195 ~~-----~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eiti-EtrPd~i~~e~L~~L~~~G--~~rvsiGvQS 266 (564)
.. ..+.++++.+.+.. ....+.+ +++|+.++++.++.|+++| +++|+||+||
T Consensus 64 G~~~~~~~~l~~Ll~~l~~~~--------------------gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs 123 (304)
T 2qgq_A 64 GIDLYRKQALPDLLRRLNSLN--------------------GEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQH 123 (304)
T ss_dssp THHHHSSCCHHHHHHHHHTSS--------------------SSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBC
T ss_pred CCCCCcHHHHHHHHHHHHhcC--------------------CCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEeccc
Confidence 32 45666777665421 1123444 4799999999999999999 9999999999
Q ss_pred CCHHHHHhcCCCCCHHHHHHHHHHHHH--cCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCCh
Q 008466 267 TYEDVARDTNRGHTVAAVADCFCLAKD--AGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 267 ~~d~vL~~i~Rght~~~~~~ai~~lr~--~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~ 344 (564)
+++++|+.|+|++|.+++.++++.+++ .|+.+.+|+|+|+||||.+++.++++.+. +++++++.++++.+.|||+
T Consensus 124 ~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i~~~~IvG~PgEt~ed~~~t~~~l~---~l~~~~v~~~~~~p~pgT~ 200 (304)
T 2qgq_A 124 GSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVE---EIQFDKLGAFVYSDEEGTV 200 (304)
T ss_dssp SCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEEEEECCTTCCHHHHHHHHHHHH---HHCCSEEEEEECCC-----
T ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHH---HcCCCEEEEEEeeCCCCCh
Confidence 999999999999999999999999999 68989999999999999999999999987 4779999999999999999
Q ss_pred hHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 345 LYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 345 L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
++++- ..+++++..+.+..+.+.
T Consensus 201 ~~~~~-----~~v~~~~~~~r~~~l~~~ 223 (304)
T 2qgq_A 201 AFNLK-----EKVDPEMAKRRQEELLLL 223 (304)
T ss_dssp -----------CCCHHHHHHHHHHHHHH
T ss_pred hHhCc-----CCCCHHHHHHHHHHHHHH
Confidence 98752 136677766666554443
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-21 Score=201.95 Aligned_cols=206 Identities=14% Similarity=0.141 Sum_probs=163.2
Q ss_pred CccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCC--CC
Q 008466 116 CPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGT--FM 192 (564)
Q Consensus 116 cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGT--pt 192 (564)
+++.++|+.+|.|| +|..... .+.+. ....+..+++.....+...| ++.| |+||+ |+
T Consensus 70 ~i~t~~C~~~C~yC------~~~~~~~--~~~~~-------~~~~s~eei~~~~~~~~~~g-----~~~i~~~gg~~~p~ 129 (369)
T 1r30_A 70 SIKTGACPEDCKYC------PQSSRYK--TGLEA-------ERLMEVEQVLESARKAKAAG-----STRFCMGAAWKNPH 129 (369)
T ss_dssp EEECSCBSSCCSSC------SCBTTSC--TTCCC-------CCCCCHHHHHHHHHHHHHTT-----CSEEEEEECCSSCC
T ss_pred EEECCCCcccCccC------CCCCcCC--CCCcc-------cccCCHHHHHHHHHHHHHcC-----CcEEEEEeCCCCCC
Confidence 55678999999999 5541110 11100 11123344444444455555 4445 55655 77
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++.+++.++++.+++. . .+++ ++++.++++.++.|+++|++++++|+|| +++++
T Consensus 130 ~~~~~~l~~ll~~ik~~-g---------------------~~i~--~t~G~l~~e~l~~L~~aGvd~v~i~les-~~e~~ 184 (369)
T 1r30_A 130 ERDMPYLEQMVQGVKAM-G---------------------LEAC--MTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFY 184 (369)
T ss_dssp TTTHHHHHHHHHHHHHT-T---------------------SEEE--EECSSCCHHHHHHHHHHCCCEEECCCBS-CHHHH
T ss_pred cCCHHHHHHHHHHHHHc-C---------------------CeEE--EecCCCCHHHHHHHHHCCCCEEeecCcC-CHHHH
Confidence 78888888888888752 1 2454 5788899999999999999999999999 99999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCC--CCeEEEeeeeecCCChhHHHHH
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFR--ADGLKIYPTLVIRGTGLYELWK 350 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~--pd~i~iy~l~v~~GT~L~~~~~ 350 (564)
+.++|+|+.++++++++.++++|+++.+++|+|+ |||.+++.++++.+. +++ |+++.++++.+.|||+|++
T Consensus 185 ~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~I~Gl-~et~ed~~~~l~~l~---~l~~~~~~i~~~~l~p~~gT~l~~--- 257 (369)
T 1r30_A 185 GNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL-GETVKDRAGLLLQLA---NLPTPPESVPINMLVKVKGTPLAD--- 257 (369)
T ss_dssp HHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECS-SCCHHHHHHHHHHHH---SSSSCCSEEEEEECCCCTTSTTSS---
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeC-CCCHHHHHHHHHHHH---hhcCCCCEEEeeeeeecCCCcCCC---
Confidence 9999999999999999999999999999999999 999999999999987 455 8999999999999999864
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 351 TGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 351 ~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
..+++.++..++++.+...+|..
T Consensus 258 ---~~~~~~~~~~~~~~~~r~~l~~~ 280 (369)
T 1r30_A 258 ---NDDVDAFDFIRTIAVARIMMPTS 280 (369)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHCTTS
T ss_pred ---CCCCCHHHHHHHHHHHHHhCCCC
Confidence 36789999999999999999874
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=197.43 Aligned_cols=177 Identities=16% Similarity=0.213 Sum_probs=147.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcCC-CCCC-CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEE
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGGT-FMSL-PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTI 237 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GGT-pt~l-~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eiti 237 (564)
+..+++....++...| +..| |.||. |... +.+++.++++.+++.++ +.+
T Consensus 92 s~eei~~~~~~~~~~G-----~~~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~-----------------------i~i 143 (350)
T 3t7v_A 92 TMEEIKETCKTLKGAG-----FHMVDLTMGEDPYYYEDPNRFVELVQIVKEELG-----------------------LPI 143 (350)
T ss_dssp CHHHHHHHHHHHTTSC-----CSEEEEEECCCHHHHHSTHHHHHHHHHHHHHHC-----------------------SCE
T ss_pred CHHHHHHHHHHHHHCC-----CCEEEEeeCCCCccccCHHHHHHHHHHHHhhcC-----------------------ceE
Confidence 4455555555555555 4444 55554 6543 45677778888776543 334
Q ss_pred EeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHH
Q 008466 238 ETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLES 317 (564)
Q Consensus 238 EtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t 317 (564)
+++|+.++++.++.|+++|++++.+|+||+++++++.++++++.+++.++++.++++|+++.+++|+|+ |||.+++.++
T Consensus 144 ~~s~g~~~~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~e~~~~~ 222 (350)
T 3t7v_A 144 MISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGV-GNDIESTILS 222 (350)
T ss_dssp EEECSSCCHHHHHHHHHTTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESS-SCCHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeec-CCCHHHHHHH
Confidence 568888999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 318 FREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 318 ~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+..+. +++++.+.++++.|.|||||++ ..+++.++..++++.+...+|.
T Consensus 223 l~~l~---~l~~~~v~~~~f~p~~gT~l~~------~~~~~~~e~l~~ia~~Rl~lp~ 271 (350)
T 3t7v_A 223 LRGMS---TNDPDMVRVMTFLPQEGTPLEG------FRDKSNLSELKIISVLRLMFPK 271 (350)
T ss_dssp HHHHH---HTCCSEEEEEECCCCTTSTTTT------CCCCCCCCHHHHHHHHHHHSTT
T ss_pred HHHHH---hCCCCEEEecceeeCCCCcCcc------CCCCChHHHHHHHHHHHHhCCC
Confidence 99987 5789999999999999999975 2467888899999999988986
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-20 Score=192.17 Aligned_cols=177 Identities=14% Similarity=0.130 Sum_probs=149.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
+..+++....++...| +..| |.||++..++.+++.++++.+++. ++.+.+
T Consensus 85 s~eei~~~i~~~~~~g-----~~~i~~~gGe~p~~~~~~~~~li~~i~~~------------------------~~~i~~ 135 (348)
T 3iix_A 85 TPEEIVERARLAVQFG-----AKTIVLQSGEDPYXMPDVISDIVKEIKKM------------------------GVAVTL 135 (348)
T ss_dssp CHHHHHHHHHHHHHTT-----CSEEEEEESCCGGGTTHHHHHHHHHHHTT------------------------SCEEEE
T ss_pred CHHHHHHHHHHHHHCC-----CCEEEEEeCCCCCccHHHHHHHHHHHHhc------------------------CceEEE
Confidence 3445555555566666 3344 678886667777778888777642 244557
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFR 319 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~ 319 (564)
++..++++.++.|+++|++++.+|+||.++++++.++++++.+++.++++.++++|+.+.+.+|+|+||+|.+++.+++.
T Consensus 136 s~g~l~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~ 215 (348)
T 3iix_A 136 SLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLL 215 (348)
T ss_dssp ECCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 320 EFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 320 ~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
.+. +++++.+.++++.|.|||++++ ..+.+.++..++++.+...+|.
T Consensus 216 ~l~---~l~~~~i~i~~~~p~~gt~l~~------~~~~~~~e~~~~~a~~R~~lp~ 262 (348)
T 3iix_A 216 FLK---EHDFDMVGIGPFIPHPDTPLAN------EKKGDFTLTLKMVALTRILLPD 262 (348)
T ss_dssp HHH---HHTCSEECCEECCCCTTSTTTT------SCCCCHHHHHHHHHHHHHHSTT
T ss_pred HHH---hcCCCEEeeeeeecCCCCCccc------CCCCCHHHHHHHHHHHHHHCCC
Confidence 887 4679999999999999999875 4568899999999988888875
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-13 Score=132.16 Aligned_cols=157 Identities=9% Similarity=0.120 Sum_probs=114.5
Q ss_pred EEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC--CHHHHHHHHHcCCCe
Q 008466 183 EFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC--LGPHLRQMLSYGCTR 259 (564)
Q Consensus 183 e~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i--~~e~L~~L~~~G~~r 259 (564)
..| |.||+|+. .++.+.++++.+++. ...+++.|+. ++ +++.++.|+++ +++
T Consensus 71 ~~i~~~GGEP~l-~~~~l~~l~~~~~~~----------------------~~~i~i~Tng-~~~~~~~~~~~l~~~-~~~ 125 (245)
T 3c8f_A 71 GGVTASGGEAIL-QAEFVRDWFRACKKE----------------------GIHTCLDTNG-FVRRYDPVIDELLEV-TDL 125 (245)
T ss_dssp CEEEEEESCGGG-GHHHHHHHHHHHHTT----------------------TCCEEEEECC-CCCCCCHHHHHHHHT-CSE
T ss_pred CeEEEECCCcCC-CHHHHHHHHHHHHHc----------------------CCcEEEEeCC-CcCcCHHHHHHHHHh-CCE
Confidence 444 78899986 456667777766542 1358899987 45 78889999988 899
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEE--EecCCCCCCHHHHHHHHHHHhcCCCCCC-CeEEEee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAH--MMPDLPNVGVERDLESFREFFESPLFRA-DGLKIYP 336 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~--lI~GLPget~e~~~~t~~~~~~~~~l~p-d~i~iy~ 336 (564)
|.+++||.++++++.+++. +.+++.++++.++++|+++.+. ++.|+ +++.+++.+.++.+.+ +++ +.+.+.|
T Consensus 126 v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~g~~v~i~~~~~~g~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 200 (245)
T 3c8f_A 126 VMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANKNVKVWIRYVVVPGW-SDDDDSAHRLGEFTRD---MGNVEKIELLP 200 (245)
T ss_dssp EEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHHTCCEEEEEEECTTT-TCCHHHHHHHHHHHHH---HCCEEEEEEEE
T ss_pred EEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhcCCEEEEEEeecCCC-CCCHHHHHHHHHHHHh---cCCCceeEEEe
Confidence 9999999999999999654 4699999999999999987654 44454 3667778787777763 454 7788888
Q ss_pred eeecCCChhHH---HHHcCCCCCCCHHHHHHHHHHH
Q 008466 337 TLVIRGTGLYE---LWKTGRYRNYPPEQLVDIVARI 369 (564)
Q Consensus 337 l~v~~GT~L~~---~~~~G~~~~~~~ee~~~~~~~~ 369 (564)
+.+.+++.... .+..+.+++++.+++.++...+
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
T 3c8f_A 201 YHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGIL 236 (245)
T ss_dssp CCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHH
T ss_pred ccccChhHHHhhCcccccccCCCCCHHHHHHHHHHH
Confidence 88766654222 2334556778888776665443
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=136.27 Aligned_cols=156 Identities=11% Similarity=0.213 Sum_probs=118.7
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..| |.||.|+..+. +.++++.+.+.. ....+++.|+...+ .+.++.|+++|+++|
T Consensus 67 ~~~i~~tGGEPll~~~--l~~li~~~~~~~--------------------~~~~i~i~TNG~ll-~~~~~~L~~~g~~~v 123 (340)
T 1tv8_A 67 VKKIRITGGEPLMRRD--LDVLIAKLNQID--------------------GIEDIGLTTNGLLL-KKHGQKLYDAGLRRI 123 (340)
T ss_dssp CCEEEEESSCGGGSTT--HHHHHHHHTTCT--------------------TCCEEEEEECSTTH-HHHHHHHHHHTCCEE
T ss_pred CCEEEEeCCCccchhh--HHHHHHHHHhCC--------------------CCCeEEEEeCccch-HHHHHHHHHCCCCEE
Confidence 3445 78999987752 445665554311 12278999999866 458999999999999
Q ss_pred EEccCCCCHHHHHhcCCCC-CHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 261 EIGVQSTYEDVARDTNRGH-TVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rgh-t~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
.|+++|.++++++.+++++ +.+++.++++.++++|+.+.+.+++ +||++.+++.+.++.+.+ ++++ +.+..+.|
T Consensus 124 ~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~~v~i~~vv-~~g~n~~ei~~~~~~~~~---~g~~-~~~i~~~p 198 (340)
T 1tv8_A 124 NVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVI-QKGINDDQIIPMLEYFKD---KHIE-IRFIEFMD 198 (340)
T ss_dssp EEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEEEEE-CTTTTGGGHHHHHHHHHH---TTCC-EEEEECCC
T ss_pred EEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCCCEEEEEEE-eCCCCHHHHHHHHHHHHh---cCCe-EEEEEeeE
Confidence 9999999999999999888 9999999999999999987777766 788888888888877763 5565 77778888
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHHHHH
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVARIL 370 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~ 370 (564)
.++++. |... ..++.++..+.+....
T Consensus 199 ~~~~~~---~~~~--~~~~~~e~~~~l~~~~ 224 (340)
T 1tv8_A 199 VGNDNG---WDFS--KVVTKDEMLTMIEQHF 224 (340)
T ss_dssp BCSSSS---BCCS--SCCCHHHHHHHHHHHS
T ss_pred cCCCcc---chhh--cCCCHHHHHHHHHhhC
Confidence 888753 2222 2467788777766443
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=134.71 Aligned_cols=160 Identities=11% Similarity=0.105 Sum_probs=117.9
Q ss_pred EEEE-E-EcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcC--C
Q 008466 182 VEFI-L-MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYG--C 257 (564)
Q Consensus 182 ve~I-~-~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G--~ 257 (564)
+..| | +||.|+..+ .+.++++.+.+. .+.+++.|+... ++.++.|+++| +
T Consensus 142 ~~~v~~sggGEPll~~--~l~~ll~~~~~~----------------------g~~i~l~TNG~~--~e~l~~L~~~g~~~ 195 (342)
T 2yx0_A 142 PTHAAISLSGEPMLYP--YMGDLVEEFHKR----------------------GFTTFIVTNGTI--PERLEEMIKEDKLP 195 (342)
T ss_dssp CCEEEECSSSCGGGST--THHHHHHHHHHT----------------------TCEEEEEECSCC--HHHHHHHHHTTCCC
T ss_pred CCEEEEcCCCcccchh--hHHHHHHHHHHC----------------------CCcEEEEcCCCc--HHHHHHHHhcCCCC
Confidence 4555 6 499998876 577777777642 146899999874 88899999988 9
Q ss_pred CeEEEccCCCCHHHHHhcCC---CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 258 TRLEIGVQSTYEDVARDTNR---GHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~R---ght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
+++.+++++.++++++.+++ +.+.+++.++++.++++|+.+.+.+++ +||++.+++.+.++.+. .++++++.+
T Consensus 196 ~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~l~~~g~~v~i~~~l-~~g~n~~~~~~l~~~l~---~~~~~~i~l 271 (342)
T 2yx0_A 196 TQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRDLPTRTVVRLTL-VKGENMHSPEKYAKLIL---KARPMFVEA 271 (342)
T ss_dssp SEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHHHTTCSSEEEEEEEE-CTTTTCCCHHHHHHHHH---HHCCSEEEE
T ss_pred CEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHHHHhCCCCEEEEEEE-ECCccHHHHHHHHHHHH---HcCCCEEEE
Confidence 99999999999999999987 467999999999999999998876666 67776555555555554 467899998
Q ss_pred eeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 335 YPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 335 y~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
.++.+.++++ .. -+.+.+++.++..++...+...+|.
T Consensus 272 ~~~~~~~~~~-~~---l~~~~~~~~e~~~~~~~~l~~~l~~ 308 (342)
T 2yx0_A 272 KAYMFVGYSR-NR---LTINNMPSHQDIREFAEALVKHLPG 308 (342)
T ss_dssp EECC-------CC---CCGGGSCCHHHHHHHHHHHHTTCTT
T ss_pred EeeeecCCCc-cc---ccccCCCCHHHHHHHHHHHHHhccC
Confidence 7877766543 11 1224568888888888877777643
|
| >2q0y_A GCN5-related N-acetyltransferase; YP_295895.1, acetyltransferase (GNAT) family, structural genomics, joint center for ST genomics; HET: MSE; 1.80A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=111.11 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=72.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCcccc-CCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPEL-MGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el-~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
..+|+++++ +.+|||+.+......+..... .+.. -++ ..+.|+++ |||+|||++||++++++|++
T Consensus 53 ~~~~va~~~---~~ivG~~~~~~~~~~~~~~~~~~~~~---~~i----~~l~V~p~----~rg~GiG~~Ll~~~~~~a~~ 118 (153)
T 2q0y_A 53 YFGWVMEEG---GAPLAGIGLMVIEWPPHPSHPLQDKR---GYI----LNLYVDPS----HRERGIGQALMNRAEAEFAE 118 (153)
T ss_dssp SEEEEEEET---TEEEEEEEEEEEECCCBTTBTTCSEE---EEE----EEEEECGG----GCSSSHHHHHHHHHHHHHHH
T ss_pred eeEEEEEeC---CeEEEEEEEEeeccCCCCCCCCCCCc---EEE----EEEEECHH----HcCCCHHHHHHHHHHHHHHH
Confidence 346777665 789999998753211111111 1111 112 22337877 99999999999999999999
Q ss_pred cCCCcEEEEecCCCcHHHHhhCCCeeeCceEeeecC
Q 008466 529 EHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564 (564)
Q Consensus 529 ~~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~l~ 564 (564)
.|+..+.+.++..|++||+|+||+..+ .|.|.|.
T Consensus 119 -~g~~~i~L~~~~~A~~fY~k~GF~~~~-~~~~~l~ 152 (153)
T 2q0y_A 119 -RGIAFAVLHATEMGQPLYARMGWSPTT-EMSKPIA 152 (153)
T ss_dssp -TTCCCEEECCCTTTHHHHHHTTCCCCC-CCCCCSC
T ss_pred -CCCCEEEEEeCHHHHHHHHHcCCccch-hhhhhcc
Confidence 599999999988999999999999998 5888763
|
| >1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold, structural genomics, PSI, P structure initiative; 2.00A {Bacillus halodurans} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.8e-11 Score=107.99 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=70.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|++.++ +.+||++.+........ .....-+++ .+.|+++ |||+|||++||++++++|++
T Consensus 55 ~~~~va~~~---~~ivG~~~~~~~~~~~~------~~~~~~~i~----~l~V~p~----~rg~GiG~~Ll~~~~~~a~~- 116 (153)
T 1z4e_A 55 NELIVACNG---EEIVGMLQVTFTPYLTY------QGSWRATIE----GVRTHSA----ARGQGIGSQLVCWAIERAKE- 116 (153)
T ss_dssp EEEEEEEET---TEEEEEEEEEEEECSHH------HHCEEEEEE----EEEECTT----STTSSHHHHHHHHHHHHHHH-
T ss_pred eeEEEEecC---CcEEEEEEEEecCCccc------CCccceEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-
Confidence 456777654 78999999875421100 000111222 2337777 99999999999999999998
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCceEeeec
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
.|+.+|.+. +|..|.+||+|+||+..+..|.|.|
T Consensus 117 ~g~~~i~l~v~~~N~~a~~~Y~k~GF~~~~~~~~~~l 153 (153)
T 1z4e_A 117 RGCHLIQLTTDKQRPDALRFYEQLGFKASHEGLKMHF 153 (153)
T ss_dssp TTEEEEEEEEETTCTTHHHHHHHHTCEEEEEEEEEEC
T ss_pred cCCCEEEEEEccCChHHHHHHHHcCCceeceeeEEcC
Confidence 599988665 4678999999999999998888875
|
| >4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A 4e8o_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-10 Score=105.11 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=73.1
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
++..+|+++++ +.+||++.+..........+.. . +.|-..+.|+.+ |||+|||++||++++++|+
T Consensus 61 ~~~~~~v~~~~---~~~vG~~~~~~~~~~~~~~~~~------~--~~~i~~~~V~p~----~rg~Gig~~Ll~~~~~~a~ 125 (166)
T 4evy_A 61 KYALQLLAYSD---HQAIAMLEASIRFEYVNGTETS------P--VGFLEGIYVLPA----HRRSGVATMLIRQAEVWAK 125 (166)
T ss_dssp TTEEEEEEEET---TEEEEEEEEEEECSCCTTCSSS------S--EEEEEEEEECGG----GTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEC---CeEEEEEEEEeecccccCCCCC------C--eEEEEEEEEChh----hhcCCHHHHHHHHHHHHHH
Confidence 34567888876 8899999986532111111111 1 122223347776 9999999999999999999
Q ss_pred hcCCCcEEEEec---CCCcHHHHhhCCCeeeCc--eEeeecC
Q 008466 528 GEHRSRKMAVIS---GVGTRHYYRKLGYELEGP--YMVKYLE 564 (564)
Q Consensus 528 ~~~g~~~i~~~s---~~~a~~fY~klGy~~~g~--~m~K~l~ 564 (564)
+ .|+..|.+.. |..|..||+|+||+..+. +|.|.|+
T Consensus 126 ~-~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~l~ 166 (166)
T 4evy_A 126 Q-FSCTEFASDAALDNVISHAMHRSLGFQETEKVVYFSKKID 166 (166)
T ss_dssp H-TTCCEEEEEEETTCHHHHHHHHHTTCEEEEEEEEEEEECC
T ss_pred H-cCCCEEEEecCCCCHHHHHHHHHcCCEecceEEEEeccCC
Confidence 8 5999997764 445999999999999996 7888774
|
| >2jdc_A Glyphosate N-acetyltransferase; GNAT; HET: CAO; 1.6A {Bacillus licheniformis} SCOP: d.108.1.1 PDB: 2bsw_A* 2jdd_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-10 Score=101.99 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=68.6
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
...+|+++++ +.+||++.+....+... . ..-.-+++ .+.|+++ |||+|+|++||+.++++|++
T Consensus 38 ~~~~~v~~~~---~~~vG~~~~~~~~~~~~----~--~~~~~~i~----~~~V~p~----~rg~Gig~~Ll~~~~~~~~~ 100 (146)
T 2jdc_A 38 GAFHLGGYYG---GKLISIASFHQAEHSEL----Q--GQKQYQLR----GMATLEG----YREQKAGSSLIKHAEEILRK 100 (146)
T ss_dssp TCEEEEEEET---TEEEEEEEEEECCCTTS----C--CSSEEEEE----EEEECTT----STTSSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecC---CEEEEEEEEeccccccc----C--CCceEEEE----EEEECHH----HcccCHHHHHHHHHHHHHHH
Confidence 3567788765 88999999986531100 0 00011222 2347877 99999999999999999999
Q ss_pred cCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.|+..+.+.++..+.+||+|+||+..+.
T Consensus 101 -~g~~~i~l~~~~~a~~~y~~~GF~~~~~ 128 (146)
T 2jdc_A 101 -RGADLLWCNARTSASGYYKKLGFSEQGE 128 (146)
T ss_dssp -TTCCEEEEEEEGGGHHHHHHTTCEEEEE
T ss_pred -cCCcEEEEEccccHHHHHHHcCCEEecc
Confidence 5999999998889999999999998763
|
| >2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein struc initiative, midwest center for structural genomics, MCSG; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=103.43 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=67.2
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+++++ +.+||++.+....+..+ ...-.-+++ .+.|+++ |||||||++||+.++++|++
T Consensus 51 ~~~~v~~~~---~~~vG~~~~~~~~~~~~------~~~~~~~i~----~l~V~p~----~rg~GiG~~Ll~~~~~~a~~- 112 (150)
T 2dxq_A 51 LTIFVATEN---GKPVATATLLIVPNLTR------AARPYAFIE----NVVTLEA----RRGRGYGRTVVRHAIETAFG- 112 (150)
T ss_dssp EEEEEEEET---TEEEEEEEEEEECCSHH------HHCCEEEEE----EEECCGG----GTTSSHHHHHHHHHHHHHHH-
T ss_pred ceEEEEecC---CEEEEEEEEEEeccccc------CCCceEEEE----EEEECHH----HhCCCHHHHHHHHHHHHHHH-
Confidence 456666654 78999999975431100 000112222 2236776 99999999999999999999
Q ss_pred CCCcEEEEec---CCCcHHHHhhCCCeeeCceEeeec
Q 008466 530 HRSRKMAVIS---GVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 530 ~g~~~i~~~s---~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
.|+.+|.+.+ |..|++||+|+||+.....+.|.+
T Consensus 113 ~g~~~i~l~v~~~N~~A~~fY~k~GF~~~~~~~~~~~ 149 (150)
T 2dxq_A 113 ANCYKVMLLTGRHDPAVHAFYESCGFVQNKTGFQIRQ 149 (150)
T ss_dssp TTCSEEEEEECCCCHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred CCCCEEEEEeCCCChHHHHHHHHcCCcccceEEEEec
Confidence 5999997754 556899999999996556665554
|
| >3i3g_A N-acetyltransferase; malaria, structural genomics, structural genomics consortium, SGC,; 1.86A {Trypanosoma brucei} PDB: 3fb3_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=102.92 Aligned_cols=96 Identities=20% Similarity=0.189 Sum_probs=71.6
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.++ ++.+||++.+........ . ..-.-++ ..+.|+.+ |||+|||++||+.++++|++
T Consensus 66 ~~~~v~~~---~~~~vG~~~~~~~~~~~~-~-----~~~~~~i----~~~~V~p~----~rg~Gig~~Ll~~~~~~a~~- 127 (161)
T 3i3g_A 66 TKVFCHQP---TGRIVGSASLMIQPKFTR-G-----GRAVGHI----EDVVVDPS----YRGAGLGKALIMDLCEISRS- 127 (161)
T ss_dssp EEEEEETT---TTEEEEEEEEEEECCSSG-G-----GCCEEEE----EEEEECGG----GTTTTHHHHHHHHHHHHHHH-
T ss_pred eEEEEEEc---CCCeEEEEEEEeccCCCC-C-----CccEEEE----EEEEEcHH----HcccCHHHHHHHHHHHHHHH-
Confidence 34455544 488999999986531100 0 0001122 12347777 99999999999999999999
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCceEeeec
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
.|+..|.+..+..+.+||+|+||+..|..|.+.|
T Consensus 128 ~g~~~i~l~~~~~n~~~y~k~GF~~~~~~~~~~l 161 (161)
T 3i3g_A 128 KGCYKVILDSSEKSLPFYEKLGFRAHERQMRLDL 161 (161)
T ss_dssp TTCSEEEEEECTTTHHHHHHTTCEEEEEEEEEEC
T ss_pred cCCcEEEEEecccchhHHHhcCCeecCceeeccC
Confidence 5999999988888899999999999999988765
|
| >4h89_A GCN5-related N-acetyltransferase; N-acyltransferase superfamily, structural genomics, PSI-BIOL midwest center for structural genomics, MCSG; 1.37A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.1e-10 Score=105.20 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=62.6
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
...|+..+. ++.+||++.+.... +. ...-+.+..+| |+++ |||||||++||++++++|++
T Consensus 60 ~~~~~v~~~--dg~ivG~~~~~~~~-----~~---~~~~~~~~~~~-----V~p~----~rg~GiG~~Ll~~~~~~a~~- 119 (173)
T 4h89_A 60 SRTTVAVDA--DGTVLGSANMYPNR-----PG---PGAHVASASFM-----VAAA----ARGRGVGRALCQDMIDWAGR- 119 (173)
T ss_dssp CEEEEEECT--TCCEEEEEEEEESS-----SG---GGTTEEEEEEE-----ECGG----GTTSSHHHHHHHHHHHHHHH-
T ss_pred ceEEEEEEe--CCeEEEEEEEEecC-----CC---CCceEEEEeeE-----EEEe----eccchHHHHHHHHHHHHHHH-
Confidence 344554442 47899999987432 11 11122233344 7776 99999999999999999999
Q ss_pred CCCcEEEEe----cCCCcHHHHhhCCCeeeC
Q 008466 530 HRSRKMAVI----SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 530 ~g~~~i~~~----s~~~a~~fY~klGy~~~g 556 (564)
.|+.++.+. .|..|.+||+|+||+.+|
T Consensus 120 ~g~~~~~l~~~~~~N~~A~~~y~k~GF~~~G 150 (173)
T 4h89_A 120 EGFRAIQFNAVVETNTVAVKLWQSLGFRVIG 150 (173)
T ss_dssp TTCSEEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEeeecccCHHHHHHHHHCCCEEEE
Confidence 599987542 467899999999999987
|
| >3mgd_A Predicted acetyltransferase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; HET: ACO; 1.90A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-10 Score=100.89 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=71.8
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
++..+|+++++ +.+||++.+......+......+ . ..|-..+.|+++ |||+|||++||+.++++|+
T Consensus 49 ~~~~~~v~~~~---~~ivG~~~~~~~~~~~~~~~~~~-----~--~~~i~~l~V~p~----~rg~Gig~~Ll~~~~~~~~ 114 (157)
T 3mgd_A 49 NLLVEWIAEEN---NQIIATAAIAFIDFPPTYTNKTG-----R--KGYITNMYTEPT----SRGNGIATGMLDRLVNEAK 114 (157)
T ss_dssp TSEEEEEEEET---TEEEEEEEEEEEECCCBTTBTTC-----E--EEEEEEEEECGG----GTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEC---CEEEEEEEEEeecCCCCccCcCC-----c--EEEEEEEEEcHH----HcCCCHHHHHHHHHHHHHH
Confidence 44566777765 88999999875431211111111 1 122222447776 9999999999999999999
Q ss_pred hcCCCcEEEEecCCCcHHHHhhCCCeeeCceE
Q 008466 528 GEHRSRKMAVISGVGTRHYYRKLGYELEGPYM 559 (564)
Q Consensus 528 ~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~m 559 (564)
+ .|+..+.+.++..+.+||+|+||+..+.+-
T Consensus 115 ~-~g~~~i~l~~n~~a~~~y~k~GF~~~~~~~ 145 (157)
T 3mgd_A 115 E-RNIHKICLVASKLGRPVYKKYGFQDTDEWL 145 (157)
T ss_dssp H-TTCCCEEECCCTTHHHHHHHHTCCCCTTCC
T ss_pred H-CCCCEEEEEeCcccHHHHHHcCCeecceEE
Confidence 9 599999999999999999999999988653
|
| >4ag7_A Glucosamine-6-phosphate N-acetyltransferase; HET: COA; 1.55A {Caenorhabditis elegans} PDB: 4ag9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-10 Score=102.16 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=71.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+++... .+++.+||++.+....+.. . ... ...++ ..+.|+++ |||+|||++||+.++++|++.
T Consensus 68 ~~~~v~~~-~~~~~ivG~~~~~~~~~~~--~----~~~--~~~~i--~~~~V~p~----~rg~Gig~~Ll~~~~~~a~~~ 132 (165)
T 4ag7_A 68 YHIVVIED-SNSQKVVASASLVVEMKFI--H----GAG--SRGRV--EDVVVDTE----MRRQKLGAVLLKTLVSLGKSL 132 (165)
T ss_dssp CEEEEEEE-TTTTEEEEEEEEEEEECSH--H----HHC--EEEEE--EEEEECGG----GTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEe-CCCCeEEEEEEEEeccccc--C----CCC--cEEEE--EEEEECHH----hcCCCHHHHHHHHHHHHHHHc
Confidence 44555554 2348999999997532100 0 000 11111 13447776 999999999999999999995
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCceEeee
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGPYMVKY 562 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~ 562 (564)
|+.++.+.....+.+||+|+||+.++.+|.+.
T Consensus 133 -g~~~i~l~~~~~n~~~Y~k~GF~~~~~~~~~r 164 (165)
T 4ag7_A 133 -GVYKISLECVPELLPFYSQFGFQDDCNFMTQR 164 (165)
T ss_dssp -TCSEEEECSCGGGHHHHHTTTCEECCCCEEEC
T ss_pred -CCeEEEEEeCHHHHHHHHHCCCCcccchhhcc
Confidence 99999998888889999999999999999875
|
| >2pdo_A Acetyltransferase YPEA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: MSE; 2.00A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.1e-10 Score=101.53 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=67.9
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+++.+ +.+||++.+.... ..+ +++ .+.|+++ |||+|||++||++++++|++ .
T Consensus 47 ~~~va~~~---~~ivG~~~~~~~~----------~~~---~i~----~l~V~p~----~rg~GiG~~Ll~~~~~~~~~-~ 101 (144)
T 2pdo_A 47 LFLVAEVN---GEVVGTVMGGYDG----------HRG---SAY----YLGVHPE----FRGRGIANALLNRLEKKLIA-R 101 (144)
T ss_dssp TEEEEEET---TEEEEEEEEEECS----------SCE---EEE----EEEECGG----GTTSCHHHHHHHHHHHHHHH-T
T ss_pred cEEEEEcC---CcEEEEEEeecCC----------Cce---EEE----EEEECcc----ccCCcHHHHHHHHHHHHHHH-c
Confidence 35666654 8899999886432 111 222 2337776 99999999999999999999 5
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCc-eEeeec
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGP-YMVKYL 563 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~-~m~K~l 563 (564)
|+.+|.+. +|..|.+||+|+||+..+. .|.|.|
T Consensus 102 g~~~i~l~v~~~n~~a~~~Y~k~GF~~~~~~~~~~~l 138 (144)
T 2pdo_A 102 GCPKIQINVPEDNDMVLGMYERLGYEHADVLSLGKRL 138 (144)
T ss_dssp TCCEEEEEEESSCHHHHHHHHHTTCEECSEEEEEEES
T ss_pred CCCEEEEEEeCCCHHHHHHHHHcCCcccceEeeeecc
Confidence 99998653 4678899999999999986 688887
|
| >3jvn_A Acetyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.61A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-10 Score=103.24 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=56.5
Q ss_pred eCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHH
Q 008466 446 ANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERI 525 (564)
Q Consensus 446 a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~ 525 (564)
..++..+|+++++ +.+||++.+......... .. .. . ..|-..+.|+.+ |||+|||++||+.++++
T Consensus 52 ~~~~~~~~v~~~~---~~~vG~~~~~~~~~~~~~---~~-~~--~--~~~i~~l~V~p~----~rg~Gig~~ll~~~~~~ 116 (166)
T 3jvn_A 52 DDPECMVYVAEMD---DVIIGFITGHFCELISTV---SK-LV--M--MATIDELYIEKE----YRREGVAEQLMMRIEQE 116 (166)
T ss_dssp HCTTEEEEEEESS---SSEEEEEEEEEEEECCSS---SC-CE--E--EEEEEEEEECTT----TCSSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEEEC---CEEEEEEEEEeecccccc---cc-Cc--c--EEEEEEEEECHH----HhccCHHHHHHHHHHHH
Confidence 4455667777765 789999998754311100 00 00 1 122223447877 99999999999999999
Q ss_pred HHhcCCCcEEEEec---CCCcHHHHhhCCCeeeCceEeeec
Q 008466 526 ALGEHRSRKMAVIS---GVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 526 A~~~~g~~~i~~~s---~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
|++ .|+.+|.+.. |..|.+||+|+||+..+.||.+..
T Consensus 117 a~~-~g~~~i~l~v~~~n~~a~~~y~k~GF~~~~~~~~~~~ 156 (166)
T 3jvn_A 117 LKD-YGVKEIFVEVWDFNKGALEFYNKQGLNEHIHYLRKPL 156 (166)
T ss_dssp HHT-TTCSEEEECCC--CCBC--------------------
T ss_pred HHH-cCCCEEEEEEecCCHHHHHHHHHcCCeEHHHHHhChh
Confidence 999 5999998764 778999999999999999887653
|
| >3t9y_A Acetyltransferase, GNAT family; PSI-biology, structural genomics, midwest center for structu genomics, MCSG; HET: PGE; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-10 Score=100.89 Aligned_cols=97 Identities=19% Similarity=0.295 Sum_probs=63.3
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
++..+|+.+.+ +.+||++.+...... .. .. -+.|-..+.|+++ |||+|||++||+.++++|+
T Consensus 49 ~~~~~~v~~~~---~~~vG~~~~~~~~~~------~~-~~----~~~~i~~~~v~p~----~rg~Gig~~ll~~~~~~~~ 110 (150)
T 3t9y_A 49 DDYFLLLLIKE---NKIIGLSGMCKMMFY------EK-NA----EYMRILAFVIHSE----FRKKGYGKRLLADSEEFSK 110 (150)
T ss_dssp TTEEEEEEEET---TEEEEEEEEEEEECS------SS-SC----EEEEEEEEEECGG----GCSSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEC---CEEEEEEEEEEeccc------cc-cC----CEEEEEEEEECHH----HhccCHHHHHHHHHHHHHH
Confidence 44566777765 889999998864311 00 01 1122222347776 9999999999999999999
Q ss_pred hcCCCcEEEEecC-----CCcHHHHhhCCCeeeCceEeeec
Q 008466 528 GEHRSRKMAVISG-----VGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 528 ~~~g~~~i~~~s~-----~~a~~fY~klGy~~~g~~m~K~l 563 (564)
+ .|+..+.+... ..+..||+|+||+.+|..+.|.|
T Consensus 111 ~-~g~~~i~l~~~~~~~N~~a~~~y~k~GF~~~~~~~~~~L 150 (150)
T 3t9y_A 111 R-LNCKAITLNSGNRNERLSAHKLYSDNGYVSNTSGFTKQL 150 (150)
T ss_dssp H-TTCSCEEECCCCCC------------CCCCCCCCCCCCC
T ss_pred H-cCCEEEEEEcCCCccchhHHHHHHHcCCEEecceEEEeC
Confidence 8 59999977654 56899999999999999888865
|
| >1tiq_A Protease synthase and sporulation negative regulatory protein PAI 1; alpha-beta protein, structural genomics, PSI; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-10 Score=104.41 Aligned_cols=91 Identities=20% Similarity=0.399 Sum_probs=65.7
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
...+|+++++ +.+|||+.+...... ... .... .-+++ +| |.++ |||+|||++||+.++++|+
T Consensus 58 ~~~~~va~~~---~~ivG~~~~~~~~~~-~~~-~~~~---~~~i~~l~-----V~p~----~rg~GiG~~Ll~~~~~~a~ 120 (180)
T 1tiq_A 58 SSQFFFIYFD---HEIAGYVKVNIDDAQ-SEE-MGAE---SLEIERIY-----IKNS----FQKHGLGKHLLNKAIEIAL 120 (180)
T ss_dssp TEEEEEEEET---TEEEEEEEEEEGGGS-SSC-CCTT---EEEEEEEE-----ECGG----GCSSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEC---CEEEEEEEEEeCCCc-ccc-cCCC---cEEEEEEE-----ECHH----HhCCCHHHHHHHHHHHHHH
Confidence 3456777755 789999999754310 000 0001 12332 44 6766 9999999999999999999
Q ss_pred hcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+ .|+.+|.+. .|..|.+||+|+||+.+|.
T Consensus 121 ~-~g~~~i~L~v~~~N~~A~~fY~k~GF~~~g~ 152 (180)
T 1tiq_A 121 E-RNKKNIWLGVWEKNENAIAFYKKMGFVQTGA 152 (180)
T ss_dssp H-TTCSEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred H-CCCCEEEEEehhcCHHHHHHHHHcCCEEcCc
Confidence 8 599998664 3778999999999999874
|
| >3efa_A Putative acetyltransferase; structural genom 2, protein structure initiative, midwest center for structu genomics, MCSG; 2.42A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.5e-10 Score=98.19 Aligned_cols=84 Identities=18% Similarity=0.293 Sum_probs=65.5
Q ss_pred EEE-EEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 451 ETF-LSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 451 e~f-ls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
.+| +.+++ ++.+||++++.... .+. -+++ .+.|+++ |||+|+|++||++++++|++
T Consensus 46 ~~~~~~~~~--~~~ivG~~~~~~~~---------~~~---~~i~----~~~V~p~----~rg~Gig~~Ll~~~~~~~~~- 102 (147)
T 3efa_A 46 CEYAVLYLQ--PDLPITTLRLEPQA---------DHV---MRFG----RVCTRKA----YRGHGWGRQLLTAAEEWATQ- 102 (147)
T ss_dssp CCEEEEEEE--TTEEEEEEEEEECS---------TTE---EEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHH-
T ss_pred cEEEEEEcC--CCeEEEEEEEEeCC---------CCe---EEEE----EEEEcHH----HcCCCHHHHHHHHHHHHHHH-
Confidence 345 66632 38899999998542 111 1222 2337776 99999999999999999999
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.|+..+.+.++..+.+||+|+||+..|.
T Consensus 103 ~g~~~i~l~~~~~a~~~y~~~Gf~~~~~ 130 (147)
T 3efa_A 103 RGFTHGEIHGELTAQRFYELCGYRVTAG 130 (147)
T ss_dssp TTCCEEEEEEEGGGHHHHHHTTCEEEEC
T ss_pred cCCCEEEEeccHHHHHHHHHcCCcccCC
Confidence 5999999999999999999999999873
|
| >1wwz_A Hypothetical protein PH1933; structural genomics, pyrococcus horikoshii OT3, riken struct genomics/proteomics initiative, RSGI; HET: ACO; 1.75A {Pyrococcus horikoshii} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-10 Score=102.91 Aligned_cols=94 Identities=21% Similarity=0.291 Sum_probs=66.0
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+++++ +.+|||+.+...... ... ....-+++ .+.|+++ |||||||++||+.++++|++ .|
T Consensus 57 ~~va~~~---~~ivG~~~~~~~~~~----~~~--~~~~~~i~----~l~V~p~----~rg~GiG~~Ll~~~~~~~~~-~g 118 (159)
T 1wwz_A 57 FFVAKVG---DKIVGFIVCDKDWFS----KYE--GRIVGAIH----EFVVDKK----FQGKGIGRKLLITCLDFLGK-YN 118 (159)
T ss_dssp EEEEEET---TEEEEEEEEEEEEEE----TTT--TEEEEEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHT-TC
T ss_pred EEEEEEC---CEEEEEEEEeccccc----ccc--CCceEEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHh-cC
Confidence 5677665 789999988532100 000 11112332 1337776 99999999999999999998 59
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc-----eEeeecC
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP-----YMVKYLE 564 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~-----~m~K~l~ 564 (564)
.+|.+. +|..|++||+|+||+..|. .|.|.|+
T Consensus 119 -~~i~l~v~~~N~~A~~fY~k~GF~~~~~~~~~~~m~~~l~ 158 (159)
T 1wwz_A 119 -DTIELWVGEKNYGAMNLYEKFGFKKVGKSGIWVRMIKRQN 158 (159)
T ss_dssp -SEEEEEEETTCHHHHHHHHHTTCEEEEEETTEEEEEEEC-
T ss_pred -CEEEEEEeCCCHHHHHHHHHCCCEEccccccHHHHHHhhc
Confidence 888653 5678999999999999884 5777763
|
| >3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac biosynthesis, alpha/beta protein; HET: EPE; 1.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-10 Score=99.97 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=70.6
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.++..++..++.+||++.+....+.. . ...-.-+++ .+.|+++ |||+|||++||+.++++|++ .|
T Consensus 52 ~~~~~~~~~~~~~vG~~~~~~~~~~~--~----~~~~~~~i~----~~~V~p~----~rg~Gig~~ll~~~~~~~~~-~g 116 (149)
T 3t90_A 52 VICVIEEETSGKIAATGSVMIEKKFL--R----NCGKAGHIE----DVVVDSR----FRGKQLGKKVVEFLMDHCKS-MG 116 (149)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEECSH--H----HHCEEEEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHH-TT
T ss_pred EEEEEEcCCCCcEEEEEEEEeccccC--C----CCCCceEEE----EEEECHH----HhCCcHHHHHHHHHHHHHHH-CC
Confidence 34333432358899999997532000 0 001111222 3447777 99999999999999999999 59
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCceEeeecC
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~l~ 564 (564)
+..+.+.......+||+|+||+..|..|.+.|+
T Consensus 117 ~~~i~l~~~~~n~~~y~k~GF~~~~~~~~~~~d 149 (149)
T 3t90_A 117 CYKVILDCSVENKVFYEKCGMSNKSIQMSKYFD 149 (149)
T ss_dssp CSEEECCCCGGGHHHHHTTTCCCCCCCCCCCCC
T ss_pred CeEEEEeccccHHHHHHHCCCeeccceeeeecC
Confidence 999998877777899999999999998888764
|
| >1on0_A YYCN protein; structural genomics, alpha-beta protein with anti-parallel B strands, PSI, protein structure initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=100.03 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=64.4
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEec--
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS-- 539 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s-- 539 (564)
+.+||++.+..... + .. +..+++ .+.|+++ |||||||++||+.++++|++ .|+++|.+..
T Consensus 70 ~~~iG~~~~~~~~~--~----~~-----~~~~i~--~~~v~~~----~rg~G~g~~ll~~~~~~a~~-~g~~~i~l~v~~ 131 (158)
T 1on0_A 70 KDIVGWLWIHAEPE--H----PQ-----QEAFIY--DFGLYEP----YRGKGYAKQALAALDQAARS-MGIRKLSLHVFA 131 (158)
T ss_dssp SCEEEEEEEEECTT--C----TT-----CEEEEE--EEEECGG----GCSSSHHHHHHHHHHHHHHH-HTCCEEEECCCT
T ss_pred CCceEEEEEEecCC--C----CC-----CeEEEE--EEEEChh----hcCCCHHHHHHHHHHHHHHH-CCCCEEEEEEec
Confidence 67899998875320 0 01 111221 2236666 99999999999999999988 5999998764
Q ss_pred -CCCcHHHHhhCCCeeeCceEeeec
Q 008466 540 -GVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 540 -~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
|..|++||+|+||+.+|..|.|.|
T Consensus 132 ~N~~a~~~Y~k~GF~~~g~~~~k~l 156 (158)
T 1on0_A 132 HNQTARKLYEQTGFQETDVVMSKKL 156 (158)
T ss_dssp TCHHHHHHHHHTTCCCCCCCCCCCC
T ss_pred CCHHHHHHHHHCCCEEEeEEEEEec
Confidence 567999999999999999999886
|
| >1s3z_A Aminoglycoside 6'-N-acetyltransferase; GNAT, aminoglycoside ribostamycin; HET: COA RIO; 2.00A {Salmonella enteritidis} SCOP: d.108.1.1 PDB: 1s5k_A* 1s60_A* 2vbq_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-09 Score=97.40 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=69.7
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
+..+|+++++ +.+||++.+....+...... ..-.-++ ..+.|+.+ |||+|||++||++++++|++
T Consensus 62 ~~~~~v~~~~---~~ivG~~~~~~~~~~~~~~~----~~~~~~i----~~~~V~p~----~rg~Gig~~ll~~~~~~~~~ 126 (165)
T 1s3z_A 62 HLASFIAMAD---GVAIGFADASIRHDYVNGCD----SSPVVFL----EGIFVLPS----FRQRGVAKQLIAAVQRWGTN 126 (165)
T ss_dssp SEEEEEEEET---TEEEEEEEEEEECSCCTTCS----SSSEEEE----EEEEECGG----GCSSSHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEC---CEEEEEEEEEeccccccccc----CCCcEEE----EEEEEChh----hcCCcHHHHHHHHHHHHHHH
Confidence 3456777665 88999999986321111000 0111222 12347776 99999999999999999999
Q ss_pred cCCCcEEEEec---CCCcHHHHhhCCCeeeCc--eEeeec
Q 008466 529 EHRSRKMAVIS---GVGTRHYYRKLGYELEGP--YMVKYL 563 (564)
Q Consensus 529 ~~g~~~i~~~s---~~~a~~fY~klGy~~~g~--~m~K~l 563 (564)
.|+..|.+.. |..|.+||+|+||+..+. +|.|.|
T Consensus 127 -~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~k~l 165 (165)
T 1s3z_A 127 -KGCREMASDTSPENTISQKVHQALGFEETERVIFYRKRC 165 (165)
T ss_dssp -TTCSEEEEEECTTCHHHHHHHHHTTCEEEEEEEEEEEEC
T ss_pred -CCCCEEEEecCcCCHHHHHHHHHcCCeEeeeEEEEeccC
Confidence 5999987653 456899999999999884 677764
|
| >3gy9_A GCN5-related N-acetyltransferase; YP_001815201.1, putative acetyltransferase; HET: MSE COA SO4; 1.52A {Exiguobacterium sibiricum 255-15} PDB: 3gya_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.6e-10 Score=98.52 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=66.6
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.+..+|+++++ +.+||++.+...... ..+. -+++ .+.|+++ |||||||++||+.++++|+
T Consensus 47 ~~~~~~v~~~~---~~ivG~~~~~~~~~~------~~~~---~~i~----~l~V~p~----~rg~Gig~~Ll~~~~~~a~ 106 (150)
T 3gy9_A 47 DGEAMFVALST---TNQVLACGGYMKQSG------QART---GRIR----HVYVLPE----ARSHGIGTALLEKIMSEAF 106 (150)
T ss_dssp TTCEEEEEECT---TCCEEEEEEEEECTT------STTE---EEEE----EEEECGG----GTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEEeC---CeEEEEEEEEeccCC------CCCe---EEEE----EEEECHh----hcCCCHHHHHHHHHHHHHH
Confidence 34567777765 789999999864200 1111 1222 2337776 9999999999999999998
Q ss_pred hcCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+ |+..|.+.+ ..|.+||+|+||+..+.
T Consensus 107 ~--~~~~i~l~~-~~a~~~y~k~GF~~~~~ 133 (150)
T 3gy9_A 107 L--TYDRLVLYS-EQADPFYQGLGFQLVSG 133 (150)
T ss_dssp T--TCSEEEECC-SSCHHHHHHTTCEECCC
T ss_pred h--CCCEEEEec-hHHHHHHHHCCCEEeee
Confidence 7 899999988 89999999999999874
|
| >1xeb_A Hypothetical protein PA0115; midwest center for structural genomics, MCSG, structural GEN protein structure initiative, PSI, APC22065; 2.35A {Pseudomonas aeruginosa} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=97.73 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=67.0
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
...+|+++++ +.+||++.+....+ ..-.-+++ .+.|+++ |||+|+|++||++++++|++
T Consensus 48 ~~~~~~~~~~---~~~vG~~~~~~~~~----------~~~~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~ 106 (150)
T 1xeb_A 48 DTHHLMAWRD---GQLLAYLRLLDPVR----------HEGQVVIG----RVVSSSA----ARGQGLGHQLMERALQAAER 106 (150)
T ss_dssp TCEEEEEEET---TEEEEEEEEECSTT----------TTTCEEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEC---CEEEEEEEEEccCC----------CCCeEEEE----EEEECHH----HccCCHHHHHHHHHHHHHHH
Confidence 3456777665 88999999984431 00011222 2337776 99999999999999999998
Q ss_pred cC-CCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 529 EH-RSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~-g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
. |+..+.+.++..|.+||+|+||+..+.
T Consensus 107 -~~g~~~i~l~~n~~a~~~y~~~Gf~~~~~ 135 (150)
T 1xeb_A 107 -LWLDTPVYLSAQAHLQAYYGRYGFVAVTE 135 (150)
T ss_dssp -HHTTCCEEEEEESTTHHHHHTTTEEECSC
T ss_pred -hcCCCEEEEechhHHHHHHHHcCCEECCc
Confidence 5 999999988999999999999999874
|
| >3fyn_A Integron gene cassette protein HFX_CASS3; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.45A {Uncultured bacterium} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.5e-10 Score=102.04 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=64.9
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+++ +.+||++.+..... .+..+ -+.|-..+.|+.+ |||+|||++||+.++++|++
T Consensus 71 ~~~~v~~~~---~~ivG~~~~~~~~~----~~~~~-------~~~~i~~~~V~p~----~rg~Gig~~ll~~~~~~a~~- 131 (176)
T 3fyn_A 71 GRIWLIAEG---TESVGYIVLTLGFS----MEYGG-------LRGFVDDFFVRPN----ARGKGLGAAALQTVKQGCCD- 131 (176)
T ss_dssp EEEEEEEET---TEEEEEEEEEEEEE----TTTTE-------EEEEEEEEEECGG----GTTSSHHHHHHHHHHHHHHH-
T ss_pred cEEEEEEEC---CEEEEEEEEEeccc----cccCC-------ceEEEEEEEEChh----hcCCCHHHHHHHHHHHHHHH-
Confidence 455777665 88999999985320 00111 1122222347777 99999999999999999999
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCce-Eeeec
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGPY-MVKYL 563 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~~-m~K~l 563 (564)
.|+..+.+. .|..|.+||+|+||+..+.+ |.|.|
T Consensus 132 ~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~k~l 169 (176)
T 3fyn_A 132 LGVRALLVETGPEDHPARGVYSRAGFEESGRMLLGQAL 169 (176)
T ss_dssp TTCCCEECCCC--------HHHHTTCCCCCCCCCCCCS
T ss_pred CCCCEEEEEecCCCHHHHHHHHHCCCeeccceEEEEEe
Confidence 599998765 35689999999999999987 77776
|
| >1i12_A Glucosamine-phosphate N-acetyltransferase; GNAT, alpha/beta; HET: ACO; 1.30A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1i1d_A* 1i21_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=99.75 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=64.9
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~ 540 (564)
++.+||++.+....+. .. ... ...|+. .+.|+++ |||||||++||+.++++|++ .|+.+|.+...
T Consensus 73 ~~~ivG~~~~~~~~~~-----~~-~~~--~~~~i~--~~~V~~~----~rg~Gig~~ll~~~~~~a~~-~g~~~i~l~~~ 137 (160)
T 1i12_A 73 TETVAATGNIIIERKI-----IH-ELG--LCGHIE--DIAVNSK----YQGQGLGKLLIDQLVTIGFD-YGCYKIILDCD 137 (160)
T ss_dssp TTEEEEEEEEEEEECS-----HH-HHC--EEEEEE--EEEECGG----GTTSSHHHHHHHHHHHHHHH-TTCSEEEEEEC
T ss_pred CCeEEEEEEEEecccc-----cc-cCC--CceEEE--EEEECHH----HcCCCHHHHHHHHHHHHHHH-cCCcEEEEEcC
Confidence 4789999988643210 00 001 112222 2347776 99999999999999999999 59999998887
Q ss_pred CCcHHHHhhCCCeeeCceEeee
Q 008466 541 VGTRHYYRKLGYELEGPYMVKY 562 (564)
Q Consensus 541 ~~a~~fY~klGy~~~g~~m~K~ 562 (564)
....+||+|+||+.+|..|.|.
T Consensus 138 ~~n~~fY~k~GF~~~g~~~~~~ 159 (160)
T 1i12_A 138 EKNVKFYEKCGFSNAGVEMQIR 159 (160)
T ss_dssp GGGHHHHHHTTCEEEEEEEEEE
T ss_pred hhhHHHHHHCCCEEcCeeeeec
Confidence 7778999999999999888764
|
| >3lod_A Putative acyl-COA N-acyltransferase; structural genomics, PSI2, MCSG, structure initiative; 2.50A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=4e-09 Score=94.68 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=70.5
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.+..+|+.+.+ ++.+||++.+.... .+. -++ ..+.|+++ |||+|||++||+.++++|+
T Consensus 47 ~~~~~~v~~~~--~~~~vG~~~~~~~~---------~~~---~~i----~~~~v~p~----~rg~Gig~~ll~~~~~~~~ 104 (162)
T 3lod_A 47 QTVIALAIRSP--QGEAVGCGAIVLSE---------EGF---GEM----KRVYIDPQ----HRGQQLGEKLLAALEAKAR 104 (162)
T ss_dssp GGEEEEEEECS--SCCEEEEEEEEECT---------TSE---EEE----EEEEECTT----SCSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECC--CCCEEEEEEEEEcC---------CCe---EEE----EEEEECHH----HcCCCHHHHHHHHHHHHHH
Confidence 34566777761 37899999998642 111 122 12347877 9999999999999999999
Q ss_pred hcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc-----------eEeeec
Q 008466 528 GEHRSRKMAVI---SGVGTRHYYRKLGYELEGP-----------YMVKYL 563 (564)
Q Consensus 528 ~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~-----------~m~K~l 563 (564)
+ +|+.+|.+. .|..+..||+|+||+..+. +|.|.|
T Consensus 105 ~-~g~~~i~l~~~~~n~~a~~~y~~~GF~~~~~~~~~~~~~~~~~m~k~l 153 (162)
T 3lod_A 105 Q-RDCHTLRLETGIHQHAAIALYTRNGYQTRCAFAPYQPDPLSVFMEKPL 153 (162)
T ss_dssp T-TTCCEEEEEEETTCHHHHHHHHHTTCEEECCCTTCCCCSSEEEEEEEC
T ss_pred H-CCCcEEEEEecCCCHHHHHHHHHcCCEEcccccccCCCCccEEEEEec
Confidence 9 599998765 3556999999999999884 688877
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=98.97 E-value=9e-09 Score=110.08 Aligned_cols=146 Identities=15% Similarity=0.218 Sum_probs=105.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEee-----CCCCCHHHHHHHHHcCCC
Q 008466 184 FILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETR-----PDYCLGPHLRQMLSYGCT 258 (564)
Q Consensus 184 ~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtr-----Pd~i~~e~L~~L~~~G~~ 258 (564)
.+|.||.|+..+.+.+.++++.+.+. . ....+++.|+ |..++++.++.|+++ .
T Consensus 166 V~ltGGEPll~~d~~L~~il~~l~~~-~-------------------~v~~i~i~Tng~~~~p~~it~e~l~~L~~~--~ 223 (416)
T 2a5h_A 166 VLLSGGDALLVSDETLEYIIAKLREI-P-------------------HVEIVRIGSRTPVVLPQRITPELVNMLKKY--H 223 (416)
T ss_dssp EEEEESCTTSSCHHHHHHHHHHHHTS-T-------------------TCCEEEEECSHHHHCGGGCCHHHHHHHGGG--C
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHhc-C-------------------CccEEEEEecccccccccCCHHHHHHHHhc--C
Confidence 44789999999988888888887652 1 1124677764 467899999999998 8
Q ss_pred eEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 259 RLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
+|.|++++.+++ .+. +++.++++.++++|+.+.+ -++.|+. ++.+++.+.++.+.+ ++++...++.
T Consensus 224 ~v~Isl~~~~~~---ei~-----~~v~~ai~~L~~aGi~v~i~~vll~GvN-d~~e~l~~l~~~l~~---lgv~~~~i~~ 291 (416)
T 2a5h_A 224 PVWLNTHFNHPN---EIT-----EESTRACQLLADAGVPLGNQSVLLRGVN-DCVHVMKELVNKLVK---IRVRPYYIYQ 291 (416)
T ss_dssp SEEEEECCCSGG---GCC-----HHHHHHHHHHHHTTCCEEEEEECCTTTT-CSHHHHHHHHHHHHH---TTEEEEEEEC
T ss_pred cEEEEEecCCHH---HHh-----HHHHHHHHHHHHcCCEEEEEEEEECCCC-CCHHHHHHHHHHHHH---cCCceEEEee
Confidence 899999998773 332 8999999999999998654 4556774 777777777777763 5566555665
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
+.+.+||+.++ .+..+..+++..+...
T Consensus 292 ~~~~~g~~~~~---------~~~~~~~eil~~l~~~ 318 (416)
T 2a5h_A 292 CDLSLGLEHFR---------TPVSKGIEIIEGLRGH 318 (416)
T ss_dssp CCCBTTCGGGC---------CCHHHHHHHHHTTBTT
T ss_pred cCCCCCccccc---------CCcccHHHHHHHHHHH
Confidence 55678887532 3456666665544443
|
| >2ae6_A Acetyltransferase, GNAT family; GCN5-related N-acetyltransferase (GNAT), alpha-beta, structu genomics, PSI, protein structure initiative; HET: GOL; 2.19A {Enterococcus faecalis} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-09 Score=98.20 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=62.1
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.|+..++ ++.+|||+.+....+. +. ..-+-++.+| |+++ |||||||++||+.++++|++ .|
T Consensus 54 ~~~~~~~--~~~ivG~~~~~~~~~~---~~----~~~~~~~~l~-----V~p~----~rg~GiG~~ll~~~~~~a~~-~g 114 (166)
T 2ae6_A 54 TIFVAIS--GQQLAGFIEVHPPTSL---AA----HQKQWLLSIG-----VSPD----FQDQGIGGSLLSYIKDMAEI-SG 114 (166)
T ss_dssp EEEEEEE--TTEEEEEEEEECSSSC---GG----GTTEEEEEEE-----ECGG----GTTSSHHHHHHHHHHHHHHH-HT
T ss_pred eEEEEee--CCEEEEEEEEEecccc---CC----CceEEEEEEE-----ECHH----HhCCCHHHHHHHHHHHHHHH-CC
Confidence 3555522 3789999999743100 00 0111233333 7776 99999999999999999999 59
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+++|.+. .|..|++||+|+||+.+|.
T Consensus 115 ~~~i~l~v~~~N~~A~~~Yek~GF~~~~~ 143 (166)
T 2ae6_A 115 IHKLSLRVMATNQEAIRFYEKHGFVQEAH 143 (166)
T ss_dssp CCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEeecCCHHHHHHHHHcCCEEeeE
Confidence 9998664 3568999999999998773
|
| >2x7b_A N-acetyltransferase SSO0209; HET: COA; 1.95A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=99.01 Aligned_cols=93 Identities=20% Similarity=0.259 Sum_probs=63.4
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|++..+ +.+||++.+....+......... ..+..|+. .+.|+++ |||||||++||++++++|++..|
T Consensus 54 ~~va~~~---~~ivG~~~~~~~~~~~~~~~~~~---~~~~~~i~--~l~V~p~----~rg~GiG~~Ll~~~~~~a~~~~g 121 (168)
T 2x7b_A 54 FFVAIVD---NSVVGYIMPRIEWGFSNIKQLPS---LVRKGHVV--SIAVLEE----YRRKGIATTLLEASMKSMKNDYN 121 (168)
T ss_dssp CEEEEET---TEEEEEEEEEEEEEECSSCSSCC---EEEEEEEE--EEEECGG----GTTSSHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEC---CeEEEEEEEEEeccccccccccC---CCcEEEEE--EEEECHH----HhccCHHHHHHHHHHHHHHHhcC
Confidence 3555554 78999999875421111111100 11222322 2346776 99999999999999999998339
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeC
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g 556 (564)
+++|.+. +|..|++||+|+||+..+
T Consensus 122 ~~~i~l~v~~~N~~A~~~Yek~GF~~~~ 149 (168)
T 2x7b_A 122 AEEIYLEVRVSNYPAIALYEKLNFKKVK 149 (168)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred eeEEEEEEEeCCHHHHHHHHHCCCEEEE
Confidence 9998665 466899999999999877
|
| >2aj6_A Hypothetical protein MW0638; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.63A {Staphylococcus aureus subsp} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=98.38 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=46.7
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+.+ +.+||++.+.... .... -+++ .+.|+.+ |||+|||++||+.++++|++
T Consensus 65 ~~~~v~~~~---~~~vG~~~~~~~~--------~~~~---~~i~----~~~V~p~----~rg~Gig~~ll~~~~~~~~~- 121 (159)
T 2aj6_A 65 DKIYIYENE---GQLIAFIWGHFSN--------EKSM---VNIE----LLYVEPQ----FRKLGIATQLKIALEKWAKT- 121 (159)
T ss_dssp EEEEEEEET---TEEEEEEEEEEET--------TTTE---EEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHH-
T ss_pred cEEEEEEEC---CeEEEEEEEEeec--------CCCE---EEEE----EEEECHH----HccCCHHHHHHHHHHHHHHH-
Confidence 445666654 8899999987542 0111 1221 2336776 99999999999999999998
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCceEeeecC
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGPYMVKYLE 564 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~~m~K~l~ 564 (564)
+|+..|.+. .|..+.+||+|+||+.++..|.|.|+
T Consensus 122 ~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~l~ 159 (159)
T 2aj6_A 122 MNAKRISNTIHKNNLPMISLNKDLGYQVSHVKMYKDID 159 (159)
T ss_dssp TTCSCCCCC-----------------------------
T ss_pred cCCcEEEEEeccCCHHHHHHHHHCCCEEeeeEEEecCC
Confidence 599988543 46679999999999999999998874
|
| >2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-09 Score=96.67 Aligned_cols=86 Identities=19% Similarity=0.313 Sum_probs=63.2
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|++..+ +.+||++.+...... . ..-.-++.+| |+++ |||||||++||+.++++|++ +
T Consensus 59 ~~~v~~~~---~~~vG~~~~~~~~~~----~----~~~~~~~~~~-----v~p~----~rg~Gig~~ll~~~~~~a~~-~ 117 (170)
T 2ge3_A 59 PQFVAIAD---GDVIGWCDIRRQDRA----T----RAHCGTLGMG-----ILPA----YRNKGLGARLMRRTLDAAHE-F 117 (170)
T ss_dssp CEEEEEET---TEEEEEEEEEECCST----T----TTTEEEEEEE-----ECGG----GTTSSHHHHHHHHHHHHHHH-H
T ss_pred eEEEEEEC---CEEEEEEEEeccccc----C----CCceEEEEEE-----ECHH----HhCCCHHHHHHHHHHHHHHH-C
Confidence 45666644 789999999754210 0 0111233333 6776 99999999999999999999 5
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
|+++|.+. .|..|++||+|+||+.+|.
T Consensus 118 g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 147 (170)
T 2ge3_A 118 GLHRIELSVHADNARAIALYEKIGFAHEGR 147 (170)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEEEEcCCHHHHHHHHHCCCEEEeE
Confidence 99998654 3568999999999998773
|
| >1cjw_A Protein (serotonin N-acetyltransferase); HET: COT; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB: 1b6b_A | Back alignment and structure |
|---|
Probab=98.94 E-value=4.6e-09 Score=93.90 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=67.0
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCcccc---CCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPEL---MGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el---~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.+|+.+++ +.+||++.+.........+.- ..... +.. |-..+.|+++ |||+|||++||+.++++|+
T Consensus 51 ~~~v~~~~---~~ivG~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~i~~~~v~p~----~rg~Gig~~ll~~~~~~~~ 119 (166)
T 1cjw_A 51 LSLGWFVE---GRLVAFIIGSLWDEERLTQESLALHRPRG--HSA--HLHALAVHRS----FRQQGKGSVLLWRYLHHVG 119 (166)
T ss_dssp GEEEEEET---TEEEEEEEEEEECSSSCCGGGGGCCCTTC--CEE--EEEEEEECTT----STTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEEC---CeEEEEEEeeeeccccccccccccccCCC--Cce--EEEEEEECHh----hccCChHHHHHHHHHHHHH
Confidence 45666554 789999998865311100000 00001 111 2123447777 9999999999999999999
Q ss_pred hcCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+..|+..+.+.+|..|..||+|+||+..+.
T Consensus 120 ~~~g~~~i~l~~n~~a~~~y~k~GF~~~~~ 149 (166)
T 1cjw_A 120 AQPAVRRAVLMCEDALVPFYQRFGFHPAGP 149 (166)
T ss_dssp TSTTCCEEEEEECGGGHHHHHTTTEEEEEE
T ss_pred HhcCcceEEEecCchHHHHHHHcCCeECCc
Confidence 823999999999999999999999998773
|
| >1y9w_A Acetyltransferase; structural genomics, Pro structure initiative, PSI, midwest center for structural GE MCSG; 1.90A {Bacillus cereus} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-09 Score=93.68 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=59.9
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEec-
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS- 539 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s- 539 (564)
++.+||++.+.... +. -++ ..+.|+++ |||+|+|++||+.++++|++ .|+..+.+.+
T Consensus 48 ~~~~vG~~~~~~~~----------~~---~~i----~~~~v~~~----~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~ 105 (140)
T 1y9w_A 48 EGKIFGGVTGTMYF----------YH---LHI----DFLWVDES----VRHDGYGSQLLHEIEGIAKE-KGCRLILLDSF 105 (140)
T ss_dssp TCCEEEEEEEEEET----------TE---EEE----EEEEECGG----GTTTTHHHHHHHHHHHHHHH-TTCCEEEEEEE
T ss_pred CCeEEEEEEEEEec----------CE---EEE----EEEEEcHH----HcCCCHHHHHHHHHHHHHHH-cCCCEEEEEcC
Confidence 37899999998553 11 112 22336776 99999999999999999999 5999998876
Q ss_pred CCCcHHHHhhCCCeeeCc
Q 008466 540 GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 540 ~~~a~~fY~klGy~~~g~ 557 (564)
+..+.+||+|+||+..+.
T Consensus 106 n~~a~~~y~~~Gf~~~~~ 123 (140)
T 1y9w_A 106 SFQAPEFYKKHGYREYGV 123 (140)
T ss_dssp GGGCHHHHHHTTCEEEEE
T ss_pred CHhHHHHHHHCCCEEEEE
Confidence 778999999999999773
|
| >1u6m_A Acetyltransferase, GNAT family; structural genomics, PSI, protein structure initiative; 2.40A {Enterococcus faecalis} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-09 Score=100.60 Aligned_cols=55 Identities=18% Similarity=0.377 Sum_probs=47.2
Q ss_pred cccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 498 AVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 498 ~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.+.|+++ |||+|||++||++++++|++ .|+.+|.+. +|..|++||+|+||+..|.
T Consensus 117 ~l~V~p~----~rg~GiG~~Ll~~~~~~a~~-~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 174 (199)
T 1u6m_A 117 TISVDER----FRGMGIGSKLLDALPEVAKA-SGKQALGLNVDFDNPGARKLYASKGFKDVTT 174 (199)
T ss_dssp EEEECGG----GTTSSHHHHHHHTHHHHHHT-TTCSEEEEEEETTCHHHHHHHHTTTCEEEEE
T ss_pred EEEECHH----HcCCCHHHHHHHHHHHHHHH-cCCCEEEEEEecCCHHHHHHHHHCCCEEccE
Confidence 4457877 99999999999999999999 599988654 3567999999999998874
|
| >3dsb_A Putative acetyltransferase; APC60368.2, ST genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.48A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.2e-09 Score=93.25 Aligned_cols=92 Identities=12% Similarity=0.030 Sum_probs=65.6
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+..++ +.+||++.+.... .. ..+ .-..|-..+.|+++ |||+|||++||++++++|++.
T Consensus 56 ~~~v~~~~---~~~vG~~~~~~~~-~~----~~~------~~~~~i~~~~V~p~----~rg~Gig~~ll~~~~~~~~~~- 116 (157)
T 3dsb_A 56 KYHVYTVF---DKVVAQIMYTYEW-SD----WRN------GNFLWIQSVYVDKE----YRRKGIFNYLFNYIKNICDKD- 116 (157)
T ss_dssp EEEEEEET---TEEEEEEEEEEEE-ET----TTT------EEEEEEEEEEECGG----GCSSSHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEeC---CcEEEEEEEEEec-cc----cCC------CceEEEEEEEECHH----HhcCCHHHHHHHHHHHHHHhc-
Confidence 44555554 8899999996432 00 000 11122223447776 999999999999999999995
Q ss_pred C-CcEEEEe---cCCCcHHHHhhCCCeeeCceEee
Q 008466 531 R-SRKMAVI---SGVGTRHYYRKLGYELEGPYMVK 561 (564)
Q Consensus 531 g-~~~i~~~---s~~~a~~fY~klGy~~~g~~m~K 561 (564)
| +.++.+. ++..+.+||+|+||+..+..|.+
T Consensus 117 ~~~~~i~~~~~~~n~~a~~~y~k~Gf~~~~~~~~~ 151 (157)
T 3dsb_A 117 ENIVGMRLYVEKENINAKATYESLNMYECDYNMYE 151 (157)
T ss_dssp TTEEEEEEEEETTCTTHHHHHHTTTCEECSEEEEE
T ss_pred CCceEEEEecCCCCHHHHHHHHHCCCEEecceeee
Confidence 8 8877543 56689999999999999976554
|
| >1q2y_A Protein YJCF, similar to hypothetical proteins; GCN5-related N-acetyltransferase superfamily fold, NYSGXRC, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.8e-09 Score=93.75 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=66.7
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+++ +.+||++.+.... +. -++ ..+.|+++ |||+|+|++||+.++++|++
T Consensus 42 ~~~~~~~~~---~~~vG~~~~~~~~----------~~---~~i----~~~~v~~~----~rg~Gig~~ll~~~~~~~~~- 96 (140)
T 1q2y_A 42 SEHIVVYDG---EKPVGAGRWRMKD----------GY---GKL----ERICVLKS----HRSAGVGGIIMKALEKAAAD- 96 (140)
T ss_dssp SEEEEEEET---TEEEEEEEEEEET----------TE---EEE----EEEECCGG----GTTTTHHHHHHHHHHHHHHH-
T ss_pred cEEEEEEEC---CeEEEEEEEEEcC----------Cc---EEE----EEEEEcHH----HhccCHHHHHHHHHHHHHHH-
Confidence 456777765 8899999998532 11 111 12347776 99999999999999999999
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.|+..+.+.++..+.+||+|+||+..+.
T Consensus 97 ~g~~~i~l~~n~~~~~~y~~~Gf~~~~~ 124 (140)
T 1q2y_A 97 GGASGFILNAQTQAVPFYKKHGYRVLSE 124 (140)
T ss_dssp TTCCSEEEEEEGGGHHHHHHTTCEESCS
T ss_pred CCCcEEEEEecHHHHHHHHHCCCEEecc
Confidence 5999999988999999999999999875
|
| >2r7h_A Putative D-alanine N-acetyltransferase of GNAT FA; putative acetyltransferase of the GNAT family; 1.85A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.2e-09 Score=95.98 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=63.9
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+++..++ +.+||++.+...... . -.-+++ .+.|+++ |||+|||++|++.++++|++
T Consensus 68 ~~~~v~~~~---~~~vG~~~~~~~~~~-------~---~~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~- 125 (177)
T 2r7h_A 68 YHFVFATED---DDMAGYACYGPTPAT-------E---GTYDLY----WIAVAPH----RQHSGLGRALLAEVVHDVRL- 125 (177)
T ss_dssp CEEEEEEET---TEEEEEEEEEECTTS-------S---SEEEEE----EEEECTT----TTTTTHHHHHHHHHHHHHHH-
T ss_pred eEEEEEEEC---CeEEEEEEEEeccCC-------C---CeEEEE----EEEECHH----HhCCCHHHHHHHHHHHHHHh-
Confidence 345666555 889999999854310 0 112232 2347777 99999999999999999999
Q ss_pred CCCcEEEEec-----CCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVIS-----GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s-----~~~a~~fY~klGy~~~g~ 557 (564)
+|+..+.+.. |..+.+||+|+||+..+.
T Consensus 126 ~g~~~i~l~~~~~~~N~~a~~~y~k~Gf~~~~~ 158 (177)
T 2r7h_A 126 TGGRLLFAETSGIRKYAPTRRFYERAGFSAEAV 158 (177)
T ss_dssp TTCCEEEEEEECSGGGHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEEeccccccHHHHHHHHHcCCEeccc
Confidence 5999987643 567899999999998773
|
| >2i79_A Acetyltransferase, GNAT family; acetyl coenzyme *A, structur genomics, PSI-2, protein structure initiative; HET: ACO; 2.10A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.8e-09 Score=96.27 Aligned_cols=86 Identities=24% Similarity=0.467 Sum_probs=62.4
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+..++ +.+||++.+...... ...-.-++-+ .|+++ |||||||++||+.++++|+++
T Consensus 60 ~~~v~~~~---~~~vG~~~~~~~~~~--------~~~~~~~~~~-----~v~~~----~~g~Gig~~ll~~~~~~a~~~- 118 (172)
T 2i79_A 60 ITLLAFLN---GKIAGIVNITADQRK--------RVRHIGDLFI-----VIGKR----YWNNGLGSLLLEEAIEWAQAS- 118 (172)
T ss_dssp EEEEEEET---TEEEEEEEEECCCST--------TTTTEEEEEE-----EECGG----GTTSSHHHHHHHHHHHHHHHT-
T ss_pred EEEEEEEC---CEEEEEEEEEecCCC--------ccceEEEEEE-----EECHH----HcCCCHHHHHHHHHHHHHHhc-
Confidence 45666654 789999999743200 0011122322 36766 999999999999999999995
Q ss_pred C-CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 531 R-SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g-~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
| +++|.+. .|..|.+||+|+||+.+|.
T Consensus 119 ~~~~~i~l~v~~~N~~A~~~yek~GF~~~g~ 149 (172)
T 2i79_A 119 GILRRLQLTVQTRNQAAVHLYQKHGFVIEGS 149 (172)
T ss_dssp SSCCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEEEEECCCHHHHHHHHHCCCEEEeE
Confidence 7 9998654 4668999999999998874
|
| >3pp9_A Putative streptothricin acetyltransferase; toxin production resistance, infectious diseases, structural genomics; HET: MSE ACO; 1.60A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.1e-09 Score=97.00 Aligned_cols=87 Identities=16% Similarity=0.326 Sum_probs=66.5
Q ss_pred eCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHH
Q 008466 446 ANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERI 525 (564)
Q Consensus 446 a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~ 525 (564)
..++..+|+++++ +.+||++.+....+ +. -+++ .+.|+++ |||+|||++||+.++++
T Consensus 72 ~~~~~~~~v~~~~---~~~vG~~~~~~~~~---------~~---~~i~----~~~v~~~----~rg~Gig~~ll~~~~~~ 128 (187)
T 3pp9_A 72 NKPNQIIYIALLH---NQIIGFIVLKKNWN---------NY---AYIE----DITVDKK----YRTLGVGKRLIAQAKQW 128 (187)
T ss_dssp SCSSEEEEEEEET---TEEEEEEEEEECTT---------SC---EEEE----EEEECGG----GTTSSHHHHHHHHHHHH
T ss_pred hCCCcEEEEEEEC---CeEEEEEEEEcCCC---------Ce---EEEE----EEEECHH----HhcCCHHHHHHHHHHHH
Confidence 4456667888775 88999999985421 11 1222 2347776 99999999999999999
Q ss_pred HHhcCCCcEEEEec---CCCcHHHHhhCCCeeeC
Q 008466 526 ALGEHRSRKMAVIS---GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 526 A~~~~g~~~i~~~s---~~~a~~fY~klGy~~~g 556 (564)
|++ +|+.++.+.. |..+.+||+|+||+..|
T Consensus 129 ~~~-~g~~~i~~~~~~~N~~a~~~y~k~Gf~~~~ 161 (187)
T 3pp9_A 129 AKE-GNMPGIMLETQNNNVAACKFYEKCGFVIGG 161 (187)
T ss_dssp HHH-TTCCEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred HHH-CCCCEEEEEEecCCHHHHHHHHHCCCEEec
Confidence 998 5999986653 45789999999999977
|
| >1kux_A Aralkylamine, serotonin N-acetyltransferase; enzyme-inhibitor complex, bisubstrate analog, alternate conformations; HET: CA3; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB: 1kuv_A* 1kuy_A* 1l0c_A* 1ib1_E* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.8e-09 Score=98.93 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=67.8
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccc-cC--CccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHH
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPE-LM--GKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIA 526 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~e-l~--~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A 526 (564)
..+|+++++ +.+||++.+..........+ +. .... .. .|-..+.|+.+ |||+|||++||++++++|
T Consensus 79 ~~~~v~~~~---~~ivG~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~i~~l~V~p~----~rg~Gig~~Ll~~~~~~~ 147 (207)
T 1kux_A 79 ELSLGWFVE---GRLVAFIIGSLWDEERLTQESLALHRPRG--HS--AHLHALAVHRS----FRQQGKGSVLLWRYLHHV 147 (207)
T ss_dssp GGEEEEEET---TEEEEEEEEEEECSSSCCGGGGGCCCTTC--CE--EEEEEEEECGG----GCSSSHHHHHHHHHHHHH
T ss_pred CeEEEEEEC---CEEEEEEEEEeecccccccccccccCCCC--CE--EEEEEEEECHH----HcCCCHHHHHHHHHHHHH
Confidence 346777665 88999999875431110000 00 0000 11 22222447776 999999999999999999
Q ss_pred HhcCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 527 LGEHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 527 ~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
++..|+..+.+.+|..|..||+|+||+..+.
T Consensus 148 ~~~~g~~~i~l~~n~~a~~~y~k~GF~~~~~ 178 (207)
T 1kux_A 148 GAQPAVRRAVLMCEDALVPFYQRFGFHPAGP 178 (207)
T ss_dssp TTSTTCCEEEEEECGGGHHHHHTTTCEEEEE
T ss_pred HhcCCceEEEEeecHHHHHHHHHCCCEECCc
Confidence 9832899999999999999999999998773
|
| >1vkc_A Putative acetyl transferase; structural genomics, pyrococcus furiosus southeast collaboratory for structural genomics, secsg; 1.89A {Pyrococcus furiosus} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.6e-09 Score=94.87 Aligned_cols=94 Identities=17% Similarity=0.268 Sum_probs=68.4
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+.+.+ ++.+||++.+...... . ...-.-+++ .+.|+.+ |||+|||++||++++++|++ +
T Consensus 62 ~~~v~~~~--~~~~vG~~~~~~~~~~-----~--~~~~~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~-~ 123 (158)
T 1vkc_A 62 KFFVALNE--RSELLGHVWICITLDT-----V--DYVKIAYIY----DIEVVKW----ARGLGIGSALLRKAEEWAKE-R 123 (158)
T ss_dssp EEEEEEET--TCCEEEEEEEEEEECT-----T--TCSEEEEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHH-T
T ss_pred EEEEEEcC--CCcEEEEEEEEEeccc-----c--CCCCEEEEE----EEEECHH----HhCCCHHHHHHHHHHHHHHH-c
Confidence 34555542 2688999999864310 0 011112231 2337776 99999999999999999999 5
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCceEeeec
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
|+..|.+. .| .+..||+|+||+..+..|.|.|
T Consensus 124 g~~~i~l~~~~~n-~a~~~y~k~GF~~~~~~~~~~l 158 (158)
T 1vkc_A 124 GAKKIVLRVEIDN-PAVKWYEERGYKARALIMEKPI 158 (158)
T ss_dssp TCSCEEECCCTTC-THHHHHHHTTCCCCCCCCCCCC
T ss_pred CCcEEEEEEeCCC-cHHHHHHHCCCEeeEEEEeccC
Confidence 99999875 46 8999999999999999888764
|
| >2bei_A Diamine acetyltransferase 2; SSAT2, BC011751, AAH11751, thialysine N-acetyltransferase, structural genomics, protein structure initiative, PSI; HET: ACO; 1.84A {Homo sapiens} SCOP: d.108.1.1 PDB: 2q4v_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-09 Score=98.53 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=57.5
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+|||+.+..... .+ .+ +..|+. .+.|+++ |||+|||++||+.++++|++ .|+.+|.+.
T Consensus 68 ~~~ivG~~~~~~~~~-~~----~~-----~~~~i~--~l~V~p~----~rg~GiG~~Ll~~~~~~a~~-~g~~~i~L~v~ 130 (170)
T 2bei_A 68 GPCVVGYGIYYFIYS-TW----KG-----RTIYLE--DIYVMPE----YRGQGIGSKIIKKVAEVALD-KGCSQFRLAVL 130 (170)
T ss_dssp CCEEEEEEEEEEEEE-TT----TE-----EEEEEE--EEEECGG----GCSSSHHHHHHHHHHHHHHH-TTCCEEEEEEE
T ss_pred CCcEEEEEEEEeecc-cc----CC-----CcEEEE--EEEEChH----hcCCCHHHHHHHHHHHHHHH-CCCCEEEEEEe
Confidence 478999998864320 00 11 222221 2337776 99999999999999999999 599998554
Q ss_pred -cCCCcHHHHhhCCCeeeC
Q 008466 539 -SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g 556 (564)
.|..|++||+|+||+..+
T Consensus 131 ~~N~~A~~fY~k~GF~~~~ 149 (170)
T 2bei_A 131 DWNQRAMDLYKALGAQDLT 149 (170)
T ss_dssp TTCHHHHHHHHHTTCEEHH
T ss_pred ccCHHHHHHHHHCCCEecc
Confidence 466899999999998754
|
| >1ufh_A YYCN protein; alpha and beta, fold, acetyltransferase, structural genomics, PSI, protein structure initiative; 2.20A {Bacillus subtilis subsp} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.6e-09 Score=96.48 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=69.0
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+.+ ++.+||++.+...... . .-.-+++ .+.|+++ |||+|||++|++.++++|++
T Consensus 84 ~~~~v~~~~--~~~~vG~~~~~~~~~~------~---~~~~~i~----~~~V~p~----~rg~Gig~~ll~~~~~~~~~- 143 (180)
T 1ufh_A 84 HHLWSLKLN--EKDIVGWLWIHAEPEH------P---QQEAFIY----DFGLYEP----YRGKGYAKQALAALDQAARS- 143 (180)
T ss_dssp EEEEEEESS--SSCEEEEEEEEECTTC------T---TCEEEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHH-
T ss_pred eeEEEEEcC--CCCEEEEEEEEecCCC------C---CCcEEEE----EEEECHh----hcCCChHHHHHHHHHHHHHH-
Confidence 445555543 2788999999864310 0 0111221 2236776 99999999999999999988
Q ss_pred CCCcEEEEec---CCCcHHHHhhCCCeeeCceEeeec
Q 008466 530 HRSRKMAVIS---GVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 530 ~g~~~i~~~s---~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
.|+.+|.+.. |..+.+||+|+||+.+|..|.|.|
T Consensus 144 ~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~l 180 (180)
T 1ufh_A 144 MGIRKLSLHVFAHNQTARKLYEQTGFQETDVVMSKKL 180 (180)
T ss_dssp TTCCEEEECCCTTCHHHHHHHHHTTCCCCCCCCCCCC
T ss_pred CCCCEEEEEeccCcHHHHHHHHHCCCEEeeeEeeecC
Confidence 5999998764 557899999999999999888865
|
| >3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.30A {Thermoplasma acidophilum} PDB: 3f0a_A* 3k9u_A* 3ne7_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-09 Score=98.49 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=67.4
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+.+++ +.+||++.+.... +. -+++ .+.|+++ |||+|||++||+.++++|++ .|
T Consensus 89 ~~v~~~~---~~ivG~~~~~~~~----------~~---~~i~----~l~V~p~----~rg~Gig~~Ll~~~~~~a~~-~g 143 (183)
T 3fix_A 89 FLGAFAD---STLIGFIELKIIA----------NK---AELL----RLYLKPE----YTHKKIGKTLLLEAEKIMKK-KG 143 (183)
T ss_dssp EEEEEET---TEEEEEEEEEEET----------TE---EEEE----EEEECGG----GCCHHHHHHHHHHHHHHHHH-HT
T ss_pred EEEEEeC---CEEEEEEEEEeCC----------Cc---eEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-cC
Confidence 6777765 8899999998541 11 1221 2337776 99999999999999999999 49
Q ss_pred CcEEEEec---CCCcHHHHhhCCCeeeCc-----eEeeec
Q 008466 532 SRKMAVIS---GVGTRHYYRKLGYELEGP-----YMVKYL 563 (564)
Q Consensus 532 ~~~i~~~s---~~~a~~fY~klGy~~~g~-----~m~K~l 563 (564)
+.+|.+.. |..|..||+|+||+..+. .|.|.|
T Consensus 144 ~~~i~l~v~~~n~~a~~~y~k~GF~~~~~~~~~~~m~k~l 183 (183)
T 3fix_A 144 ILECRLYVHRQNSVGFSFYYKNGFKVEDTDGSDFIMEKKY 183 (183)
T ss_dssp CCEEEEEEETTCHHHHHHHHHTTCEEEEECSSEEEEEEEC
T ss_pred CceEEEEEecCCHHHHHHHHHcCCEEecccccchhhcccC
Confidence 99987654 667899999999999884 676654
|
| >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.9e-09 Score=106.12 Aligned_cols=148 Identities=9% Similarity=0.106 Sum_probs=95.5
Q ss_pred EEE-EE-cCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 183 EFI-LM-GGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 183 e~I-~~-GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
..| |. ||.|+..+ .+.++++.+++. .+.+++.|+... ++.++. .|.++|
T Consensus 129 ~~i~~s~gGEPll~~--~l~~li~~~~~~----------------------g~~~~l~TNG~~--~~~l~~---L~~~~v 179 (311)
T 2z2u_A 129 KHVAISLSGEPTLYP--YLDELIKIFHKN----------------------GFTTFVVSNGIL--TDVIEK---IEPTQL 179 (311)
T ss_dssp CEEEECSSSCGGGST--THHHHHHHHHHT----------------------TCEEEEEECSCC--HHHHHH---CCCSEE
T ss_pred CEEEEeCCcCccchh--hHHHHHHHHHHC----------------------CCcEEEECCCCC--HHHHHh---CCCCEE
Confidence 444 65 89998854 477777777642 136888888753 555554 489999
Q ss_pred EEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 261 EIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
.+++++.++++++.+.++ ++.+++.++++.++++| .+. +.++.|+.. +.+ +.++.+. .++++.|.+.+
T Consensus 180 ~isld~~~~~~~~~i~~~~~~~~~~v~~~i~~l~~~g-~v~i~~~~~~g~n~-~~~---~~~~~~~---~~~~~~i~l~~ 251 (311)
T 2z2u_A 180 YISLDAYDLDSYRRICGGKKEYWESILNTLDILKEKK-RTCIRTTLIRGYND-DIL---KFVELYE---RADVHFIELKS 251 (311)
T ss_dssp EEECCCSSTTTC----CCCHHHHHHHHHHHHHHTTSS-SEEEEEEECTTTTC-CGG---GTHHHHH---HHTCSEEEEEE
T ss_pred EEEeecCCHHHHHHHhCCccchHHHHHHHHHHHHhcC-CEEEEEEEECCcch-hHH---HHHHHHH---HcCCCEEEEEe
Confidence 999999999999999987 78999999999999998 654 455555533 333 3344333 35689999999
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
+.+.++++. . + +...+++.++..+.+..+.+
T Consensus 252 ~~p~g~~~~-~-~--~~~~~~~~~e~~~~~~~l~~ 282 (311)
T 2z2u_A 252 YMHVGYSQK-R-L--KKEDMLQHDEILKLAKMLDE 282 (311)
T ss_dssp CC----------------CCCCHHHHHHHHHHHHT
T ss_pred eEEcccccc-c-c--ccccCCCHHHHHHHHHHHHH
Confidence 999988872 2 1 12256788888877765554
|
| >2g3a_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 1.90A {Agrobacterium tumefaciens str} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=5.2e-09 Score=93.73 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=59.1
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEec-
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS- 539 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s- 539 (564)
++.+||++.+.... +. -+++ .+.|+++ |||+|||++||++++++|++ .|+..+.+.+
T Consensus 60 ~~~~vG~~~~~~~~----------~~---~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~-~g~~~i~l~~~ 117 (152)
T 2g3a_A 60 DNSVTGGLVGHTAR----------GW---LYVQ----LLFVPEA----MRGQGIAPKLLAMAEEEARK-RGCMGAYIDTM 117 (152)
T ss_dssp TCCEEEEEEEEEET----------TE---EEEE----EEECCGG----GCSSSHHHHHHHHHHHHHHH-TTCCEEEEEES
T ss_pred CCeEEEEEEEEEeC----------CE---EEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-CCCCEEEEEec
Confidence 47899999987532 11 1222 2337776 99999999999999999999 5999998876
Q ss_pred CCCcHHHHhhCCCeeeCc
Q 008466 540 GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 540 ~~~a~~fY~klGy~~~g~ 557 (564)
|..+.+||+|+||+..+.
T Consensus 118 n~~a~~~y~k~GF~~~~~ 135 (152)
T 2g3a_A 118 NPDALRTYERYGFTKIGS 135 (152)
T ss_dssp CHHHHHHHHHHTCEEEEE
T ss_pred CccHHHHHHHCCCEEeee
Confidence 567899999999998763
|
| >1ghe_A Acetyltransferase; acyl coenzyme A complex; HET: ACO; 1.55A {Pseudomonas syringae PV} SCOP: d.108.1.1 PDB: 1j4j_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-08 Score=92.19 Aligned_cols=89 Identities=22% Similarity=0.344 Sum_probs=64.8
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
+..+|+.+++ +.+||++.+....... ..-.-+++ .+.|+++ |||+|+|++|++.++++|++
T Consensus 61 ~~~~~v~~~~---~~~vG~~~~~~~~~~~--------~~~~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~ 121 (177)
T 1ghe_A 61 SLLLWVVAED---DNVLASAQLSLCQKPN--------GLNRAEVQ----KLMVLPS----ARGRGLGRQLMDEVEQVAVK 121 (177)
T ss_dssp SEEEEEEEET---TEEEEEEEEEECCSTT--------CTTEEEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecC---CEEEEEEEEEeccCCC--------CcceEEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH
Confidence 3556777665 8899999998653110 00112233 1337776 99999999999999999999
Q ss_pred cCCCcEEEEec--CCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAVIS--GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~~s--~~~a~~fY~klGy~~~g~ 557 (564)
.|+..|.+.. +..+..||+|+||+..+.
T Consensus 122 -~g~~~i~l~~~~~n~a~~~y~k~Gf~~~~~ 151 (177)
T 1ghe_A 122 -HKRGLLHLDTEAGSVAEAFYSALAYTRVGE 151 (177)
T ss_dssp -TTCCEEEEEEETTSHHHHHHHHTTCEEEEE
T ss_pred -cCCCEEEEEeccCCHHHHHHHHcCCEEccc
Confidence 5999986653 335999999999998763
|
| >4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.5e-09 Score=93.41 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=68.7
Q ss_pred CCeEEEEEEeecCCC-eEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQD-ILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIA 526 (564)
Q Consensus 448 gg~e~fls~~d~~~~-~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A 526 (564)
+...+|+.+.+ + .+||++.+....... .+... . .-..|-..+.|+.+ |||+|||++||+.++++|
T Consensus 52 ~~~~~~v~~~~---~g~~vG~~~~~~~~~~~-~~~~~--~----~~~~~i~~~~V~p~----~rg~Gig~~ll~~~~~~~ 117 (164)
T 4e0a_A 52 EKSTVLVFVDE---REKIGAYSVIHLVQTPL-LPTMQ--Q----RKTVYISDLCVDET----RRGGGIGRLIFEAIISYG 117 (164)
T ss_dssp SSEEEEEEEEE---TTEEEEEEEEEEEEECC-CSSBC--C----EEEEEEEEEEECGG----GCSSSHHHHHHHHHHHHH
T ss_pred CceEEEEEECC---CCcEEEEEEEEecCCCC-Ccccc--C----CcEEEEEEEEECHH----HhcCChHHHHHHHHHHHH
Confidence 44667777776 5 899999998654111 00011 0 11122223447776 999999999999999999
Q ss_pred HhcCCCcEEEEe---cCCCcHHHHhhCCCeeeCce
Q 008466 527 LGEHRSRKMAVI---SGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 527 ~~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~~ 558 (564)
++ .|+..|.+. .|..+.+||+|+||+..+..
T Consensus 118 ~~-~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 151 (164)
T 4e0a_A 118 KA-HQVDAIELDVYDFNDRAKAFYHSLGMRCQKQT 151 (164)
T ss_dssp HH-TTCSEEEEEEETTCHHHHHHHHHTTCEEEEEE
T ss_pred HH-cCCCEEEEEEEcCCHHHHHHHHHcCCEEecee
Confidence 99 599998765 56678999999999998853
|
| >1qst_A TGCN5 histone acetyl transferase; GCN5-related N-acetyltransferase, COA binding protein; HET: EPE; 1.70A {Tetrahymena thermophila} SCOP: d.108.1.1 PDB: 1m1d_A* 1pu9_A* 1pua_A* 5gcn_A* 1qsr_A* 1q2d_A* 1q2c_A* 1qsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-08 Score=93.09 Aligned_cols=76 Identities=20% Similarity=0.272 Sum_probs=58.3
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~ 540 (564)
++.+||++.+.... ... ..+++ .+.|+++ |||+|+|++||+.++++|++ .|+..|.+.+.
T Consensus 55 ~~~~vG~~~~~~~~----------~~~-~~~i~----~~~v~~~----~rg~Gig~~ll~~~~~~~~~-~g~~~l~~~~~ 114 (160)
T 1qst_A 55 KQKVIGGICFRQYK----------PQR-FAEVA----FLAVTAN----EQVRGYGTRLMNKFKDHMQK-QNIEYLLTYAD 114 (160)
T ss_dssp TTEEEEEEEEEEEG----------GGT-EEEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred CCEEEEEEEEEEec----------CCC-eEEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-CCCcEEEEeCc
Confidence 37899999987432 111 11222 1347776 99999999999999999999 59999987664
Q ss_pred CCcHHHHhhCCCeeeC
Q 008466 541 VGTRHYYRKLGYELEG 556 (564)
Q Consensus 541 ~~a~~fY~klGy~~~g 556 (564)
..+.+||+|+||+..|
T Consensus 115 n~a~~~y~k~Gf~~~~ 130 (160)
T 1qst_A 115 NFAIGYFKKQGFTKEH 130 (160)
T ss_dssp SSSHHHHHHTTCBSSC
T ss_pred chhHHHHHHCCCEEee
Confidence 4899999999999876
|
| >2fiw_A GCN5-related N-acetyltransferase:aminotransferase II; alpha-beta-alpha sandwich, GCN4-related acetyltransferase, S genomics, PSI; HET: ACO; 2.35A {Rhodopseudomonas palustris} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-08 Score=92.91 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=64.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+++.+ +.+||++.+. + .. +++ .+.|+++ |||+|||++||+.++++|++
T Consensus 62 ~~~~v~~~~---~~~vG~~~~~-~------------~~---~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~- 113 (172)
T 2fiw_A 62 QLTLIATLQ---GVPVGFASLK-G------------PD---HID----MLYVHPD----YVGRDVGTTLIDALEKLAGA- 113 (172)
T ss_dssp SEEEEEEET---TEEEEEEEEE-T------------TT---EEE----EEEECGG----GCSSSHHHHHHHHHHHHHHT-
T ss_pred CeEEEEEEC---CEEEEEEEEe-c------------Cc---EEE----EEEECcc----ccCcCHHHHHHHHHHHHHHh-
Confidence 346777665 8899999997 1 11 122 1236776 99999999999999999999
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.|+..|.+..|..+.+||+|+||+..+.
T Consensus 114 ~g~~~i~~~~n~~a~~~y~k~GF~~~~~ 141 (172)
T 2fiw_A 114 RGALILTVDASDNAAEFFAKRGYVAKQR 141 (172)
T ss_dssp TTCSEEEEEECTTTHHHHHTTTCEEEEE
T ss_pred cCCcEEEEEeCHHHHHHHHHcCCEEecc
Confidence 5999999888999999999999998763
|
| >2fl4_A Spermine/spermidine acetyltransferase; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=7.2e-09 Score=93.56 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=60.9
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+.+.+ +.+|||+.+.... . +. ....++| |+++ |||||||++||+.++++|++..
T Consensus 47 ~~~~~~~~---~~~iG~~~~~~~~--------~-~~--~~i~~~~-----v~~~----~~g~Gig~~ll~~~~~~~~~~~ 103 (149)
T 2fl4_A 47 ESAGIYDG---NQLIGYAMYGRWQ--------D-GR--VWLDRFL-----IDQR----FQGQGYGKAACRLLMLKLIEKY 103 (149)
T ss_dssp EEEEEEET---TEEEEEEEEEECT--------T-SC--EEEEEEE-----ECGG----GTTSSHHHHHHHHHHHHHHHHS
T ss_pred ceEEEEEC---CeEEEEEEEeecC--------C-Cc--EEEEEEE-----ECHH----HcCCCHHHHHHHHHHHHHHHhC
Confidence 34555544 7899999876321 1 11 1111233 6766 9999999999999999999754
Q ss_pred CCcEEEEec---CCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVIS---GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~s---~~~a~~fY~klGy~~~g~ 557 (564)
|+++|.+.. |..|.+||+|+||+.+|.
T Consensus 104 ~~~~i~l~v~~~N~~a~~~Y~k~GF~~~g~ 133 (149)
T 2fl4_A 104 QTNKLYLSVYDTNSSAIRLYQQLGFVFNGE 133 (149)
T ss_dssp SCSEEEEEECTTCHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEEEECCCHHHHHHHHHCCCEEecc
Confidence 789987653 667999999999998874
|
| >3e0k_A Amino-acid acetyltransferase; N-acetylglutamate synthase, structu genomics, PSI-2, protein structure initiative; HET: MSE; 2.52A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-09 Score=93.62 Aligned_cols=82 Identities=17% Similarity=0.289 Sum_probs=62.9
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+++...+ +.+||++.+....+ .-.-+++ .+.|+++ |||+|||++||+.++++|++ .|
T Consensus 45 ~~v~~~~---~~ivG~~~~~~~~~-----------~~~~~i~----~~~V~p~----~rg~Gig~~Ll~~~~~~a~~-~g 101 (150)
T 3e0k_A 45 FTIIEKD---GLIIGCAALYPYSE-----------ERKAEMA----CVAIHPD----YRDGNRGLLLLNYMKHRSKS-EN 101 (150)
T ss_dssp EEEEEET---TEEEEEEEEEEEGG-----------GTEEEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHT-TT
T ss_pred eEEEEEC---CEEEEEEEEEEcCC-----------CCeEEEE----EEEECHH----HhccCHHHHHHHHHHHHHHH-CC
Confidence 3455554 88999999875420 1112233 1237776 99999999999999999998 59
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+..+.+. +..|.+||+|+||+..|.
T Consensus 102 ~~~i~l~-n~~a~~~y~k~GF~~~~~ 126 (150)
T 3e0k_A 102 INQIFVL-TTHSLHWFREQGFYEVGV 126 (150)
T ss_dssp CCEEECC-CSSCHHHHHHHTCCCCCG
T ss_pred CcEEEEe-cHHHHHHHHHcCCeecCc
Confidence 9999876 888999999999999874
|
| >3f8k_A Protein acetyltransferase; GCN5-related N-acetyltransferase; HET: COA; 1.84A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.2e-09 Score=92.96 Aligned_cols=80 Identities=26% Similarity=0.270 Sum_probs=62.8
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
....|+++++ +.+||++.+.- . .++.++ |+++ |||+|||++||+.++++|++
T Consensus 53 ~~~~~v~~~~---~~~vG~~~~~~-------------~---~~~~~~-----v~p~----~rg~Gig~~ll~~~~~~~~~ 104 (160)
T 3f8k_A 53 DHVTFLAEVD---GKVVGEASLHK-------------D---GEFSLV-----VHRN----YRTLGIGTLLVKTLIEEAKK 104 (160)
T ss_dssp CEEEEEEEET---TEEEEEEEEET-------------T---SBEEEE-----ECGG----GTTSSHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEC---CeEEEEEEeec-------------c---eEEEEE-----ECHH----HcCCCHHHHHHHHHHHHHHH
Confidence 3445777765 89999999970 1 122333 7766 99999999999999999998
Q ss_pred cCCCcEEEEec---CCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAVIS---GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~~s---~~~a~~fY~klGy~~~g~ 557 (564)
.|+.++.+.. |..|.+||+|+||+..+.
T Consensus 105 -~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 135 (160)
T 3f8k_A 105 -SGLSTVKFYTLPENTPMIKIGRKLGFKMRFY 135 (160)
T ss_dssp -TTCSEEEEEECTTCHHHHHHHHHHTCEEEEC
T ss_pred -cCceEEEEEEcccCHHHHHHHHHcCCEEEee
Confidence 5999987653 557899999999999863
|
| >3dr6_A YNCA; acetyltransferase, csgid target, essential gene, IDP00086, structural genomics, center for STRU genomics of infectious diseases; HET: MSE; 1.75A {Salmonella typhimurium} SCOP: d.108.1.1 PDB: 3dr8_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=91.70 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=63.7
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+++ +.+||++.+....+. + +.....+..+ .|+++ |||+|||++||+.++++|++
T Consensus 54 ~~~~~~~~~---~~~vG~~~~~~~~~~---~----~~~~~~~~~~-----~v~p~----~rg~Gig~~ll~~~~~~~~~- 113 (174)
T 3dr6_A 54 YPVLVSEEN---GVVTGYASFGDWRSF---D----GFRYTVEHSV-----YVHPA----HQGKGLGRKLLSRLIDEARR- 113 (174)
T ss_dssp CCEEEEEET---TEEEEEEEEEESSSS---G----GGTTEEEEEE-----EECGG----GTTSSHHHHHHHHHHHHHHH-
T ss_pred ceEEEEecC---CeEEEEEEEeecCCC---C----CcceEEEEEE-----EECHH----HccCCHHHHHHHHHHHHHHH-
Confidence 445666655 889999999754311 0 0011112223 37776 99999999999999999988
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.|+.+|.+. .|..+.+||+|+||+..+.
T Consensus 114 ~g~~~i~~~~~~~n~~a~~~y~k~Gf~~~~~ 144 (174)
T 3dr6_A 114 CGKHVMVAGIESQNAASIRLHHSLGFTVTAQ 144 (174)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEEeecCCHHHHHHHHhCCCEEEEE
Confidence 599998654 3567899999999999774
|
| >3kkw_A Putative uncharacterized protein; acetyltransferase, GNAT family, structural genomics, PSI, protein structure initiative; 1.41A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.9e-09 Score=95.63 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=62.4
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+++++ +.+||++.+....+ ... -+++ .+.|.++ |||+|||++|++.++++|++.
T Consensus 72 ~~~~v~~~~---g~ivG~~~~~~~~~--------~~~---~~i~----~l~V~p~----~rg~Gig~~Ll~~~~~~a~~~ 129 (182)
T 3kkw_A 72 RGSTVAVHD---GQVLGFANFYQWQH--------GDF---CALG----NMMVAPA----ARGLGVARYLIGVMENLAREQ 129 (182)
T ss_dssp EEEEEEEET---TEEEEEEEEEEEET--------TTE---EEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEeC---CeEEEEEEEEeecC--------Cce---EEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHhc
Confidence 346777665 89999999974320 011 1222 2347776 999999999999999999994
Q ss_pred CCCcEEEE---ecCCCcHHHHhhCCCeeeC
Q 008466 530 HRSRKMAV---ISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 530 ~g~~~i~~---~s~~~a~~fY~klGy~~~g 556 (564)
.+.++|.+ .+|..|..||+|+||+..|
T Consensus 130 ~~~~~i~l~v~~~N~~a~~~y~k~GF~~~~ 159 (182)
T 3kkw_A 130 YKARLMKISCFNANAAGLLLYTQLGYQPRA 159 (182)
T ss_dssp HCCSEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred CCccEEEEEEecCCHHHHHHHHHCCCeEec
Confidence 26777755 3567889999999999877
|
| >2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family, phosphinothricin, methionine sulfone, methionine sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A 2j8n_A 2j8r_A* 1yvo_A | Back alignment and structure |
|---|
Probab=98.85 E-value=9.8e-09 Score=94.16 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=59.0
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||++.+...... +... -.-++.+| |+++ |||||||++||+.++++|++ .|+.+|.+.
T Consensus 62 ~~~~vG~~~~~~~~~~---~~~~----~~~~~~~~-----V~p~----~rg~Gig~~ll~~~~~~a~~-~g~~~i~l~v~ 124 (172)
T 2j8m_A 62 AGEVLGYASYGDWRPF---EGFR----GTVEHSVY-----VRDD----QRGKGLGVQLLQALIERARA-QGLHVMVAAIE 124 (172)
T ss_dssp TCCEEEEEEEEESSSS---GGGT----TEEEEEEE-----ECTT----CTTSSHHHHHHHHHHHHHHH-TTCCEEEEEEE
T ss_pred CCeEEEEEEEecccCC---cccC----ceEEEEEE-----EChh----hcCCCHHHHHHHHHHHHHHH-CCccEEEEEEc
Confidence 3788999998743210 0000 01122233 7777 99999999999999999988 599998654
Q ss_pred -cCCCcHHHHhhCCCeeeCc
Q 008466 539 -SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g~ 557 (564)
.|..|.+||+|+||+.+|.
T Consensus 125 ~~N~~a~~~y~k~GF~~~g~ 144 (172)
T 2j8m_A 125 SGNAASIGLHRRLGFEISGQ 144 (172)
T ss_dssp TTCHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHHHHHHHCCCEEEee
Confidence 4668999999999998874
|
| >2k5t_A Uncharacterized protein YHHK; N-acetyl transferase, COA, bound ligand, coenzyme A, structural genomics, PSI-2, protein structure initiative; HET: COA; NMR {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.3e-09 Score=90.93 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=61.4
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
+..+|+++++ +.+|||+++.... .. -+++ .+.|+++ |||+|||++||++++++|+.
T Consensus 36 ~~~~~va~~~---~~ivG~~~~~~~~----------~~---~~i~----~l~V~p~----~rg~GiG~~Ll~~~~~~~~~ 91 (128)
T 2k5t_A 36 NHRIYAARFN---ERLLAAVRVTLSG----------TE---GALD----SLRVREV----TRRRGVGQYLLEEVLRNNPG 91 (128)
T ss_dssp SEEEEEEEET---TEEEEEEEEEEET----------TE---EEEE----EEEECTT----CSSSSHHHHHHHHHHHHSCS
T ss_pred CccEEEEEEC---CeEEEEEEEEEcC----------Cc---EEEE----EEEECHH----HcCCCHHHHHHHHHHHHhhh
Confidence 4567777765 7899999997542 11 1222 2338887 99999999999999999864
Q ss_pred cCCCcEEEEecC-----CCcHHHHhhCCCeeeCceEee
Q 008466 529 EHRSRKMAVISG-----VGTRHYYRKLGYELEGPYMVK 561 (564)
Q Consensus 529 ~~g~~~i~~~s~-----~~a~~fY~klGy~~~g~~m~K 561 (564)
...+.+... ..|+.||+|+||+..+..+.|
T Consensus 92 ---~~~~~l~~~~~~~~~~a~~fY~~~GF~~~~~~~~~ 126 (128)
T 2k5t_A 92 ---VSCWWMADAGVEDRGVMTAFMQALGFTTQQGGWEK 126 (128)
T ss_dssp ---CCEEEECCTTCSTHHHHHHHHHHHTCEECSSSEEE
T ss_pred ---CCEEEEeccCccccHHHHHHHHHcCCCccccchhc
Confidence 444545221 157899999999998875443
|
| >2i6c_A Putative acetyltransferase; GNAT family, structural genomic, structur genomics, PSI-2, protein structure initiative; HET: MSE EPE; 1.30A {Pseudomonas aeruginosa} SCOP: d.108.1.1 PDB: 3pgp_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-08 Score=90.59 Aligned_cols=84 Identities=18% Similarity=0.280 Sum_probs=62.5
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+.+++ +.+||++.+....+ .. .-+++ .+.|+++ |||+|+|++||+.++++|++.+
T Consensus 51 ~~~v~~~~---~~~vG~~~~~~~~~--------~~---~~~i~----~~~v~p~----~rg~Gig~~l~~~~~~~~~~~~ 108 (160)
T 2i6c_A 51 GSTVAVHD---GQVLGFANFYQWQH--------GD---FCALG----NMMVAPA----ARGLGVARYLIGVMENLAREQY 108 (160)
T ss_dssp EEEEEEET---TEEEEEEEEEEEET--------TT---EEEEE----EEEECGG----GTTTTHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeC---CeEEEEEEEEEEcC--------CC---ceEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHhhC
Confidence 35666654 88999999985430 00 11222 2347776 9999999999999999999823
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeC
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g 556 (564)
|+..+.+. .|..+.+||+|+||+..+
T Consensus 109 g~~~i~l~~~~~n~~a~~~y~k~Gf~~~~ 137 (160)
T 2i6c_A 109 KARLMKISCFNANAAGLLLYTQLGYQPRA 137 (160)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred CccEEEEEEecCCHHHHHHHHHcCCEEcc
Confidence 99998764 466789999999999877
|
| >1n71_A AAC(6')-II; aminoglycoside 6'-N-acetyltransferase, antibiotic resistance, coenzyme A; HET: COA; 1.80A {Enterococcus faecium} SCOP: d.108.1.1 PDB: 2a4n_A* 1b87_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-08 Score=93.30 Aligned_cols=76 Identities=25% Similarity=0.299 Sum_probs=57.3
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~ 540 (564)
++.+||++.+.... ..+ .-+++ .+.|+++ |||+|||++||++++++|++ .|+.++.+.+.
T Consensus 53 ~~~~vG~~~~~~~~--------~~~---~~~i~----~l~V~p~----~rg~GiG~~ll~~~~~~~~~-~g~~~i~l~~~ 112 (180)
T 1n71_A 53 QDELVGFIGAIPQY--------GIT---GWELH----PLVVESS----RRKNQIGTRLVNYLEKEVAS-RGGITIYLGTD 112 (180)
T ss_dssp TTEEEEEEEEEEEE--------TTT---EEEEE----EEEECTT----SCSSSHHHHHHHHHHHHHHH-TTCCEEEEEEE
T ss_pred CCeEEEEEEEeccC--------CCc---eEEEE----EEEEccc----cccCCHHHHHHHHHHHHHHH-CCCcEEEEEec
Confidence 37899999997431 001 11222 2337777 99999999999999999998 59999977642
Q ss_pred --------------------------C--CcHHHHhhCCCeeeC
Q 008466 541 --------------------------V--GTRHYYRKLGYELEG 556 (564)
Q Consensus 541 --------------------------~--~a~~fY~klGy~~~g 556 (564)
. .|.+||+|+||+.++
T Consensus 113 ~~n~~s~~~~~~~~~~~~~~~~~v~n~~~~a~~~y~k~GF~~~~ 156 (180)
T 1n71_A 113 DLDHGTTLSQTDLYEHTFDKVASIQNLREHPYEFYEKLGYKIVG 156 (180)
T ss_dssp CSSSCBTTSSSCTTSSHHHHHHTCCBSSCCTHHHHHHTTCEEEE
T ss_pred CCcccccccccccccccchhhhhhcccchHHHHHHHHcCcEEEe
Confidence 1 579999999999876
|
| >3s6f_A Hypothetical acetyltransferase; acyl-COA N-acyltransferases, structural genomics, joint CENT structural genomics, JCSG; HET: MSE COA; 1.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.1e-09 Score=93.89 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=64.5
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+++.++ +++.+|||+++.... . . +.+-..+.|+++ |||+|||++||++++++|+
T Consensus 48 ~~~~~~~~--~~~~~vG~~~~~~~~-----------~-~----~~~i~~l~V~p~----~rg~GiG~~Ll~~~~~~~~-- 103 (145)
T 3s6f_A 48 AVFVLART--PDGQVIGFVNALSDG-----------I-L----AASIPLLEVQAG----WRSLGLGSELMRRVLTELG-- 103 (145)
T ss_dssp SEEEEEEC--TTCCEEEEEEEEECS-----------S-S----EEECCCEEECTT----SCSSSHHHHHHHHHHHHHC--
T ss_pred ceEEEEEC--CCCCEEEEEEEEecC-----------C-c----EEEEEEEEECHH----HhcCcHHHHHHHHHHHHhc--
Confidence 34566655 247899999987332 0 0 122223447887 9999999999999999996
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCceEee
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGPYMVK 561 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K 561 (564)
+...+.+.++..|.+||+|+||+..+.++.+
T Consensus 104 -~~~~~~l~~~~~a~~fY~k~GF~~~~~~~~~ 134 (145)
T 3s6f_A 104 -DLYMVDLSCDDDVVPFYERLGLKRANAMFLR 134 (145)
T ss_dssp -SCSEEECCCCGGGHHHHHHTTCCCCCCCCCC
T ss_pred -CCCeEEEEECHHHHHHHHHCCCEECCcEEEE
Confidence 3566888888899999999999998875544
|
| >1z4r_A General control of amino acid synthesis protein 5-like 2; GCN5, acetyltransferase, SGC, structural genomics, structural genomics consortium; HET: ACO; 1.74A {Homo sapiens} SCOP: d.108.1.1 PDB: 1cm0_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=92.80 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=64.5
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
+..+|+.+++ +.+||++.+.... .. ...|+. .+.|+++ |||+|+|++||+.++++|++
T Consensus 53 ~~~~~~~~~~---~~~vG~~~~~~~~----------~~---~~~~i~--~~~v~~~----~rg~Gig~~ll~~~~~~~~~ 110 (168)
T 1z4r_A 53 KHKTLALIKD---GRVIGGICFRMFP----------TQ---GFTEIV--FCAVTSN----EQVKGYGTHLMNHLKEYHIK 110 (168)
T ss_dssp TCEEEEEEET---TEEEEEEEEEEET----------TT---TEEEEE--EEEECGG----GCSSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEC---CEEEEEEEEEEec----------CC---CceEEE--EEEECHH----HhCCCHHHHHHHHHHHHHHH
Confidence 3456777665 8899999987542 01 011111 1246776 99999999999999999998
Q ss_pred cCCCcEEEEecCCCcHHHHhhCCCeeeC
Q 008466 529 EHRSRKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 529 ~~g~~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
.|+..+.+.++..|.+||+|+||+.+|
T Consensus 111 -~g~~~~~~~~~~~a~~~y~k~GF~~~~ 137 (168)
T 1z4r_A 111 -HNILYFLTYADEYAIGYFKKQGFSKDI 137 (168)
T ss_dssp -TTCCEEEEEECGGGHHHHHHTTEESCC
T ss_pred -cCCcEEEEeCChHHHHHHHHCCCcEee
Confidence 599998777788899999999999875
|
| >3g8w_A Lactococcal prophage PS3 protein 05; APC61042, acetyltransferase, staphylococcus epidermidis ATCC structural genomics; HET: NHE FLC; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-08 Score=92.83 Aligned_cols=85 Identities=16% Similarity=0.278 Sum_probs=61.0
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
..+|+++++ +.+||++.+....... . .-.-+++ +| |++ ||+|||++||+.++++|++
T Consensus 55 ~~~~~~~~~---~~~vG~~~~~~~~~~~----~----~~~~~i~~~~-----v~~------rg~Gig~~ll~~~~~~a~~ 112 (169)
T 3g8w_A 55 WNIFGAFED---DELVATCTLKQMNYVG----K----CHKAILENNF-----VKN------NDEIVNRELINHIIQYAKE 112 (169)
T ss_dssp EEEEEEESS---SCEEEEEEEEECCSTT----T----TTEEEEEEEE-----EGG------GCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEC---CEEEEEEEEEeccccc----c----CceEEEEEEE-----Ecc------CCCcHHHHHHHHHHHHHHH
Confidence 356777765 8899999998653110 0 0011222 22 332 9999999999999999999
Q ss_pred cCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+|+++|.+. .|..|.+||+|+||+.+|.
T Consensus 113 -~g~~~i~l~v~~~N~~a~~~y~k~GF~~~g~ 143 (169)
T 3g8w_A 113 -QNIETLMIAIASNNISAKVFFSSIGFENLAF 143 (169)
T ss_dssp -TTCCEEEEEEETTCHHHHHHHHTTTCEEEEE
T ss_pred -CCCCEEEEEEecCCHHHHHHHHHcCCEEeee
Confidence 599998643 4668999999999998873
|
| >2vez_A Putative glucosamine 6-phosphate acetyltransferase; acyltransferase; HET: ACO G6P; 1.45A {Aspergillus fumigatus} PDB: 2vxk_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.3e-09 Score=97.72 Aligned_cols=96 Identities=16% Similarity=0.219 Sum_probs=68.4
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.++ .++.+||++.+...... .. ...-.-+++ .+.|+.+ |||+|||++||++++++|++
T Consensus 94 ~~~~v~~~--~~g~ivG~~~~~~~~~~-----~~-~~~~~~~i~----~~~V~p~----~rg~Gig~~Ll~~~~~~a~~- 156 (190)
T 2vez_A 94 YYLLVVCD--GEGRIVGTGSLVVERKF-----IH-SLGMVGHIE----DIAVEKG----QQGKKLGLRIIQALDYVAEK- 156 (190)
T ss_dssp EEEEEEEC--TTSCEEEEEEEEEEECS-----HH-HHCEEEEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHH-
T ss_pred cEEEEEEc--CCCcEEEEEEEEecccc-----cc-CCCceEEEE----EEEEchh----hcCCCHHHHHHHHHHHHHHH-
Confidence 44555553 24789999999753210 00 011111221 2347776 99999999999999999999
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCceEeee
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGPYMVKY 562 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~ 562 (564)
+|+.+|.+.......+||+|+||+..|..|.+.
T Consensus 157 ~g~~~i~l~~~~~n~~~y~k~GF~~~~~~~~~~ 189 (190)
T 2vez_A 157 VGCYKTILDCSEANEGFYIKCGFKRAGLEMAHY 189 (190)
T ss_dssp HTCSEEECCCCGGGHHHHHHTTCCCCCCCCCCC
T ss_pred cCCeEEEEEeccchHHHHHHCCCeehHHhHhhc
Confidence 499999888777778999999999999766543
|
| >1yr0_A AGR_C_1654P, phosphinothricin acetyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.00A {Agrobacterium tumefaciens str} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-08 Score=92.67 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=61.7
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
++++.. ++.+||++.+...... +... ..-++.+| |+++ |||+|||++||+.++++|++ .|
T Consensus 57 ~~v~~~---~~~ivG~~~~~~~~~~---~~~~----~~~~~~~~-----V~p~----~rg~Gig~~ll~~~~~~a~~-~g 116 (175)
T 1yr0_A 57 VIVAIL---DGKVAGYASYGDWRAF---DGYR----HTREHSVY-----VHKD----ARGHGIGKRLMQALIDHAGG-ND 116 (175)
T ss_dssp EEEEEE---TTEEEEEEEEEESSSS---GGGT----TEEEEEEE-----ECTT----STTSSHHHHHHHHHHHHHHT-TT
T ss_pred EEEEEe---CCcEEEEEEEecccCc---cccC----ceEEEEEE-----ECcc----ccCCCHHHHHHHHHHHHHHh-CC
Confidence 455543 3789999998743210 0000 11222333 7777 99999999999999999988 59
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+.+|.+. .|..|++||+|+||+.+|.
T Consensus 117 ~~~i~l~v~~~N~~a~~~y~k~GF~~~g~ 145 (175)
T 1yr0_A 117 VHVLIAAIEAENTASIRLHESLGFRVVGR 145 (175)
T ss_dssp CCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred ccEEEEEecCCCHHHHHHHHHCCCEEEEE
Confidence 9998653 4678999999999998874
|
| >3tth_A Spermidine N1-acetyltransferase; central intermediary metabolism; 3.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.8e-09 Score=93.34 Aligned_cols=88 Identities=22% Similarity=0.272 Sum_probs=64.2
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
+...|+... .++.+||++.+...... .-.-++..+ |+++ |||+|||++||+.++++|++
T Consensus 56 ~~~~~~~~~--~~~~~vG~~~~~~~~~~----------~~~~~i~~~-----v~~~----~rg~Gig~~ll~~~~~~a~~ 114 (170)
T 3tth_A 56 SERRFIIKD--LKDNKVGLVELTEIDFI----------HRRCEFAII-----ISPG----EEGKGYATEATDLTVEYAFS 114 (170)
T ss_dssp SCEEEEEEC--TTCCEEEEEEEEEEETT----------TTEEEEEEE-----ECTT----SCSSCSHHHHHHHHHHHHHH
T ss_pred CccEEEEEc--CCCCEEEEEEEEecccc----------cceEEEEEE-----ECcc----ccCCCHHHHHHHHHHHHHHh
Confidence 344566552 34889999998744211 111233333 6776 99999999999999999977
Q ss_pred cCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+.|+.+|.+. .|..|.+||+|+||+.+|.
T Consensus 115 ~~~~~~i~~~~~~~N~~a~~~y~k~GF~~~g~ 146 (170)
T 3tth_A 115 ILNLHKIYLLVDEDNPAALHIYRKSGFAEEGK 146 (170)
T ss_dssp TSCCCEEEEEEETTCHHHHHHHHTTTCEEEEE
T ss_pred hCCceEEEEEecCCCHHHHHHHHHCCCeEEEE
Confidence 4599998654 4567899999999999884
|
| >2vi7_A Acetyltransferase PA1377; GNAT, GCN5 family, N-acetyltransferase, hypothetical protein; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.82 E-value=7e-09 Score=95.92 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=63.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+.+ +.+||++.+..... +... -.-++ .+.|+++ |||||||++||+.++++|+++
T Consensus 58 ~~~~v~~~~---~~~vG~~~~~~~~~----~~~~----~~~~~-----~~~v~p~----~rg~Gig~~ll~~~~~~a~~~ 117 (177)
T 2vi7_A 58 LLILVALHQ---GDVIGSASLEQHPR----IRRS----HSGSI-----GMGVAVA----WQGKGVGSRLLGELLDIADNW 117 (177)
T ss_dssp EEEEEEEET---TEEEEEEEEEECSS----GGGT----TEEEC-----TTCCEES----STTTTHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEC---CEEEEEEEEecCCc----cccc----eEEEE-----EEEECHH----HcCCCHHHHHHHHHHHHHHhc
Confidence 455666654 78999999975320 0000 01122 2336766 999999999999999999985
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.|+++|.+. .|..|.+||+|+||+.+|.
T Consensus 118 ~~~~~i~l~v~~~N~~a~~~Yek~GF~~~g~ 148 (177)
T 2vi7_A 118 MNLRRVELTVYTDNAPALALYRKFGFETEGE 148 (177)
T ss_dssp SCCSEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEEEEECCCHHHHHHHHHCCCEEEee
Confidence 359998654 3668999999999998873
|
| >3d8p_A Acetyltransferase of GNAT family; NP_373092.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-08 Score=89.31 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=62.8
Q ss_pred CeEEEEEEeecCCCe-EEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 449 GWETFLSYEDTRQDI-LVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 449 g~e~fls~~d~~~~~-lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
...+|+.+.+ +. +||++.+.... +. +.+-..+.|+++ |||+|||++|++.++++|+
T Consensus 52 ~~~~~v~~~~---~~~~vG~~~~~~~~---------~~-------~~~i~~~~v~p~----~rg~Gig~~ll~~~~~~a~ 108 (163)
T 3d8p_A 52 GGQFWLAINN---HQNIVGTIGLIRLD---------NN-------MSALKKMFVDKG----YRNLKIGKKLLDKVIMTCK 108 (163)
T ss_dssp TCEEEEEECT---TCCEEEEEEEEECS---------TT-------EEEEEEEEECGG----GTTTTHHHHHHHHHHHHHH
T ss_pred CceEEEEEeC---CCeEEEEEEEEecC---------CC-------EEEEEEEEEChh----hccCCHHHHHHHHHHHHHH
Confidence 3456777654 56 89999987542 11 111122336776 9999999999999999999
Q ss_pred hcCCCcEEEEe---cCCCcHHHHhhCCCeeeC
Q 008466 528 GEHRSRKMAVI---SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 528 ~~~g~~~i~~~---s~~~a~~fY~klGy~~~g 556 (564)
+ .|+.+|.+. .|..|.+||+|+||+..+
T Consensus 109 ~-~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~ 139 (163)
T 3d8p_A 109 E-QNIDGIYLGTIDKFISAQYFYSNNGFREIK 139 (163)
T ss_dssp H-TTCCEEEEEECTTCHHHHHHHHHTTCEEEC
T ss_pred H-CCCeEEEEEecCCCHHHHHHHHHCCCEEee
Confidence 9 599999764 355789999999999986
|
| >2jlm_A Putative phosphinothricin N-acetyltransferase; methionine sulfoximine; 2.35A {Acinetobacter baylyi} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=94.22 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=59.2
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+|||+.+...... +.. .-.-|+.+| |+++ |||||||++||+.++++|++ .|+++|.+.
T Consensus 70 ~g~iiG~~~~~~~~~~---~~~----~~~~e~~~~-----v~p~----~rg~Gig~~ll~~~~~~a~~-~g~~~i~l~v~ 132 (182)
T 2jlm_A 70 VGQLLGFASWGSFRAF---PAY----KYTVEHSVY-----IHKD----YRGLGLSKHLMNELIKRAVE-SEVHVMVGCID 132 (182)
T ss_dssp TSCEEEEEEEEESSSS---GGG----TTEEEEEEE-----ECTT----STTSSHHHHHHHHHHHHHHH-TTCCEEEEEEE
T ss_pred CCcEEEEEEecccCCc---ccc----cceeEEEEE-----EChh----hcCCCHHHHHHHHHHHHHHH-CCceEEEEEEe
Confidence 3788999998743210 000 011233344 7877 99999999999999999988 599998653
Q ss_pred -cCCCcHHHHhhCCCeeeCc
Q 008466 539 -SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g~ 557 (564)
.|..|++||+|+||+.+|.
T Consensus 133 ~~N~~a~~~yek~GF~~~g~ 152 (182)
T 2jlm_A 133 ATNVASIQLHQKLGFIHSGT 152 (182)
T ss_dssp TTCHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHHHHHHHCCCcEEEE
Confidence 4668999999999999874
|
| >2oh1_A Acetyltransferase, GNAT family; YP_013287.1, structural genom joint center for structural genomics, JCSG, protein structu initiative; HET: MSE UNL; 1.46A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=92.42 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=66.2
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccC--CccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELM--GKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~--~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
.|+... .++.+||++.+....+. ....+- .... -+.|-..+.|+++ |||+|||++||+.++++|++
T Consensus 67 ~~v~~~--~~~~ivG~~~~~~~~~~-~~~~~~~~~~~~----~~~~i~~l~V~p~----~rg~Gig~~ll~~~~~~a~~- 134 (179)
T 2oh1_A 67 VALFET--EAGALAGAMIIRKTPSD-WDTDLWEDLAID----KAYYLHRIMVSRA----FSGISLSKQMIYFAEKLGIE- 134 (179)
T ss_dssp EEEEEC--TTCCEEEEEEEESSCCH-HHHHHHGGGTTS----CEEEEEEEEECGG----GTTSCHHHHHHHHHHHHHHH-
T ss_pred EEEEEe--cCCeEEEEEEEecCCCc-chhcccccCCCC----ceEEEEEEEECHH----HcCCCHHHHHHHHHHHHHHH-
Confidence 456551 24789999999754210 000000 0000 1122223347776 99999999999999999998
Q ss_pred CCCcEEEEec---CCCcHHHHhhCCCeeeCc-----eEeeec
Q 008466 530 HRSRKMAVIS---GVGTRHYYRKLGYELEGP-----YMVKYL 563 (564)
Q Consensus 530 ~g~~~i~~~s---~~~a~~fY~klGy~~~g~-----~m~K~l 563 (564)
.|+..|.+.. |..|.+||+|+||+..|. .+.|.|
T Consensus 135 ~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~ek~l 176 (179)
T 2oh1_A 135 MSVPFIRLDCIESNETLNQMYVRYGFQFSGKKNGFYLYQKEL 176 (179)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHTTCEEEEEETTEEEEEEEC
T ss_pred cCCCEEEEEecCCcHHHHHHHHHCCCEEecccCChhhhhhhh
Confidence 5999987654 556899999999999883 555554
|
| >1vhs_A Similar to phosphinothricin acetyltransferase; structural genomics, unknown function; 1.80A {Bacillus subtilis} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-08 Score=93.80 Aligned_cols=88 Identities=17% Similarity=0.285 Sum_probs=62.5
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+... +++.+||++.+..... .+... -.-|+-+| |+++ |||||||++||+.++++|++ .
T Consensus 53 ~~~v~~~--~~~~ivG~~~~~~~~~---~~~~~----~~~e~~l~-----V~p~----~rg~GiG~~ll~~~~~~a~~-~ 113 (175)
T 1vhs_A 53 PLYVAED--ENGNVAAWISFETFYG---RPAYN----KTAEVSIY-----IDEA----CRGKGVGSYLLQEALRIAPN-L 113 (175)
T ss_dssp CEEEEEC--TTSCEEEEEEEEESSS---SGGGT----TEEEEEEE-----ECGG----GCSSSHHHHHHHHHHHHGGG-G
T ss_pred eEEEEEc--CCCcEEEEEEEeccCC---CCccC----CEEEEEEE-----EChh----hcCCCHHHHHHHHHHHHHHh-C
Confidence 3555543 2367899999874321 01111 01123333 6766 99999999999999999998 5
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
|+.+|.+. .|..|++||+|+||+.+|.
T Consensus 114 g~~~i~l~v~~~N~~A~~~yek~GF~~~g~ 143 (175)
T 1vhs_A 114 GIRSLMAFIFGHNKPSLKLFEKHGFAEWGL 143 (175)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred CceEEEEEEecCCHHHHHHHHHCCCEEEeE
Confidence 99998654 4678999999999998873
|
| >1y7r_A Hypothetical protein SA2161; structural genomics, protein structure initiative, PSI, midwest center for structural genomics; 1.70A {Staphylococcus aureus} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.5e-08 Score=87.28 Aligned_cols=83 Identities=27% Similarity=0.412 Sum_probs=62.3
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
-+|+.+++ +.+||++.+.... .. .-+++ .+.|+++ |||+|+|++||+.++++|++.
T Consensus 40 ~~~~~~~~---~~~vG~~~~~~~~---------~~---~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~~- 95 (133)
T 1y7r_A 40 FTVTLYDK---DRLIGMGRVIGDG---------GT---VFQIV----DIAVLKS----YQGQAYGSLIMEHIMKYIKNV- 95 (133)
T ss_dssp EEEEEEET---TEEEEEEEEEECS---------SS---EEEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHHH-
T ss_pred eEEEEEEC---CEEEEEEEEEccC---------CC---eEEEE----EEEEcHH----HhcCchHHHHHHHHHHHHHHc-
Confidence 34566665 7899999987432 01 11222 2337776 999999999999999999984
Q ss_pred CCcE--EEEecCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRK--MAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~--i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
|++. +.+.++..+.+||+|+||+..+.
T Consensus 96 g~~~~~~~~~~n~~a~~~y~k~Gf~~~~~ 124 (133)
T 1y7r_A 96 SVESVYVSLIADYPADKLYVKFGFMPTEP 124 (133)
T ss_dssp CCTTCEEEEEEETTHHHHHHTTTCEECTT
T ss_pred CCCEEEEEEeCCchHHHHHHHcCCeECCC
Confidence 8764 45667889999999999999875
|
| >3i9s_A Integron cassette protein; oyster POND, woods HOLE, acetyltransferase, structural genomics, PSI-2, protein structure initiative; 2.20A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-08 Score=93.32 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=66.1
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
+..+|+.+++ +.+||++.+....+.. . ..-.-++ ..+.|+.+ |||+|||++||++++++|++
T Consensus 73 ~~~~~v~~~~---g~ivG~~~~~~~~~~~---~----~~~~~~i----~~~~V~p~----~rg~Gig~~ll~~~~~~a~~ 134 (183)
T 3i9s_A 73 GVKVIAAVEH---DKVLGFATYTIMFPAP---K----LSGQMYM----KDLFVSSS----ARGKGIGLQLMKHLATIAIT 134 (183)
T ss_dssp CCEEEEEEET---TEEEEEEEEEEESCCG---G----GCEEEEE----EEEEECGG----GTTSCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEC---CEEEEEEEEEEecCCC---C----CCCeEEE----EeEEECHh----hcCCCHHHHHHHHHHHHHHH
Confidence 3456777665 8899999997543110 0 0111222 22347776 99999999999999999999
Q ss_pred cCCCcEEEEe---cCCCcHHHHhhCCCeeeCce
Q 008466 529 EHRSRKMAVI---SGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 529 ~~g~~~i~~~---s~~~a~~fY~klGy~~~g~~ 558 (564)
.|+..|.+. .|..|..||+|+||+..+..
T Consensus 135 -~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 166 (183)
T 3i9s_A 135 -HNCQRLDWTAESTNPTAGKFYKSIGASLIREK 166 (183)
T ss_dssp -TTEEEEEEEEETTCHHHHHHHHHTTCEECTTE
T ss_pred -cCCCEEEEEEecCChHHHHHHHHcCCceeccc
Confidence 499998665 35568999999999998853
|
| >2ob0_A Human MAK3 homolog; acetyltransferase, structural genomics consortium, SGC; HET: ACO; 1.80A {Homo sapiens} PDB: 2psw_A* 3tfy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-08 Score=92.03 Aligned_cols=86 Identities=20% Similarity=0.291 Sum_probs=63.3
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+++.+ +.+||++.+...... .. . ..+-..+.|+++ |||+|||++||+.++++|++..
T Consensus 46 ~~~~~~~~---~~~vG~~~~~~~~~~---------~~--~--~~~i~~~~v~p~----~rg~Gig~~ll~~~~~~~~~~~ 105 (170)
T 2ob0_A 46 LAKLAYFN---DIAVGAVCCRVDHSQ---------NQ--K--RLYIMTLGCLAP----YRRLGIGTKMLNHVLNICEKDG 105 (170)
T ss_dssp GEEEEEET---TEEEEEEEEEEEEET---------TE--E--EEEEEEEEECGG----GTTSSHHHHHHHHHHHHHHHHC
T ss_pred cEEEEEEC---CeEEEEEEEEEEecC---------CC--c--EEEEEEEEECHH----HcCcCHHHHHHHHHHHHHHhcC
Confidence 45677665 889999999754210 00 1 122223447776 9999999999999999999833
Q ss_pred CCcEEEEec---CCCcHHHHhhCCCeeeC
Q 008466 531 RSRKMAVIS---GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~~s---~~~a~~fY~klGy~~~g 556 (564)
|+..|.+.. |..+.+||+|+||+..+
T Consensus 106 g~~~i~l~~~~~N~~a~~~y~k~GF~~~~ 134 (170)
T 2ob0_A 106 TFDNIYLHVQISNESAIDFYRKFGFEIIE 134 (170)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred CccEEEEEEecCCHHHHHHHHHcCCEEeE
Confidence 999987653 44789999999999876
|
| >1qsm_A HPA2 histone acetyltransferase; protein-acetyl coenzyme A complex; HET: ACO; 2.40A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1qso_A | Back alignment and structure |
|---|
Probab=98.80 E-value=8e-09 Score=91.12 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=65.0
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+++. ..++.+||++.+....... ...+ .-+++ .+.|+++ |||+|||++||+.++++|++
T Consensus 52 ~~~~v~~~-~~~~~~vG~~~~~~~~~~~----~~~~---~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~- 114 (152)
T 1qsm_A 52 MWAAVAVE-SSSEKIIGMINFFNHMTTW----DFKD---KIYIN----DLYVDEN----SRVKGAGGKLIQFVYDEADK- 114 (152)
T ss_dssp EEEEEEEE-SSSCCEEEEEEEEEECCTT----CSSC---EEEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHH-
T ss_pred eeEEEEEe-CCCCeEEEEEEEEecCCcc----cccc---ceEEE----EEEechh----cccCCHHHHHHHHHHHHHHH-
Confidence 34566651 1237899999997542110 0110 11221 2347776 99999999999999999998
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCceEe
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGPYMV 560 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~~m~ 560 (564)
.|+..|.+. .|..|.+||+|+||+..+..+.
T Consensus 115 ~g~~~i~l~~~~~n~~a~~~y~k~Gf~~~~~~~~ 148 (152)
T 1qsm_A 115 LGTPSVYWCTDESNHRAQLLYVKVGYKAPKILYK 148 (152)
T ss_dssp TTCCCEEEEEETTCHHHHHHHHHHEEECSEEEEE
T ss_pred cCCCeEEEEeeCCCHHHHHHHHHcCCCccceEEE
Confidence 599998654 4557899999999998775544
|
| >3eg7_A Spermidine N1-acetyltransferase; structural genomics, IDP016 transferase, center for structural genomics of infectious D csgid; HET: MSE; 2.38A {Vibrio cholerae} SCOP: d.108.1.0 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=92.74 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=65.0
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
++..+|+... .++.+||++.+...... .-.-++.+ .|+++ |||+|||++||+.++++|+
T Consensus 56 ~~~~~~~~~~--~~~~~vG~~~~~~~~~~----------~~~~~~~~-----~v~~~----~rg~Gig~~ll~~~~~~a~ 114 (176)
T 3eg7_A 56 NAERRFVVED--AQKNLIGLVELIEINYI----------HRSAEFQI-----IIAPE----HQGKGFARTLINRALDYSF 114 (176)
T ss_dssp TTCEEEEEEC--TTCCEEEEEEEEEEETT----------TTEEEEEE-----EECGG----GTTSSCHHHHHHHHHHHHH
T ss_pred CCccEEEEEe--cCCCEEEEEEEEecCcc----------cCceEEEE-----EECHH----HhCCCHHHHHHHHHHHHHH
Confidence 3445677662 34889999998743211 11123333 36766 9999999999999999998
Q ss_pred hcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
++.|+.+|.+. .|..|..||+|+||+.+|.
T Consensus 115 ~~~g~~~i~~~~~~~N~~a~~~y~k~GF~~~~~ 147 (176)
T 3eg7_A 115 TILNLHKIYLHVAVENPKAVHLYEECGFVEEGH 147 (176)
T ss_dssp HTSCCSEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred HhCCccEEEEEehhcCHHHHHHHHHCCCEEeee
Confidence 84599998654 4567899999999999885
|
| >2q7b_A Acetyltransferase, GNAT family; NP_689019.1, structural GEN joint center for structural genomics, JCSG; HET: MSE FLC; 2.00A {Streptococcus agalactiae 2603V} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.9e-08 Score=91.13 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=63.6
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhh--cCHHHHHHHHHHHHHH
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQH--QGYGTLLMEEAERIAL 527 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~--~GiG~~Lm~~aE~~A~ 527 (564)
..+|+++++ +.+||++.+.... ... -+++ .+.|+.+ ||| +|||++||+.++++|+
T Consensus 71 ~~~~v~~~~---g~ivG~~~~~~~~---------~~~---~~i~----~~~V~p~----~rg~~~Gig~~ll~~~~~~a~ 127 (181)
T 2q7b_A 71 GQFWIALEN---EKVVGSIALLRID---------DKT---AVLK----KFFTYPK----YRGNPVRLGRKLFERFMLFAR 127 (181)
T ss_dssp CEEEEEEET---TEEEEEEEEEECS---------SSE---EEEE----EEEECGG----GSSTTTCHHHHHHHHHHHHHH
T ss_pred cEEEEEEEC---CEEEEEEEEEEcC---------CCE---EEEE----EEEEChh----hcCccccHHHHHHHHHHHHHH
Confidence 456777654 8899999998542 111 1221 2336776 999 9999999999999999
Q ss_pred hcCCCcEEEEec---CCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVIS---GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~s---~~~a~~fY~klGy~~~g~ 557 (564)
+ .|+.+|.+.. |..|..||+|+||+..+.
T Consensus 128 ~-~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 159 (181)
T 2q7b_A 128 A-SKFTRIVLDTPEKEKRSHFFYENQGFKQITR 159 (181)
T ss_dssp H-TTCCEEEEEEETTCHHHHHHHHTTTCEEECT
T ss_pred H-CCCcEEEEEecCCCHHHHHHHHHCCCEEeee
Confidence 9 5999987653 456899999999999773
|
| >1mk4_A Hypothetical protein YQJY; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=9.9e-09 Score=91.56 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=62.7
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+.+++ +.+||++.+...... .+ .-+++ .+.|+++ |||+|+|++||+.++++|++ .
T Consensus 43 ~~~v~~~~---~~~vG~~~~~~~~~~-------~~---~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~-~ 100 (157)
T 1mk4_A 43 TSFITSEH---NSMTGFLIGFQSQSD-------PE---TAYIH----FSGVHPD----FRKMQIGKQLYDVFIETVKQ-R 100 (157)
T ss_dssp GCEEEESS---SSEEEEEEEEECSSS-------TT---EEEEE----EEEECTT----SCHHHHHHHHHHHHHHHHHT-T
T ss_pred cEEEEEEC---CeEEEEEEEecCCCC-------CC---eEEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-C
Confidence 45666654 789999998754311 11 11221 2347777 99999999999999999998 5
Q ss_pred CCcEEEEec---CCCcHHHHhhCCCeeeC
Q 008466 531 RSRKMAVIS---GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~~s---~~~a~~fY~klGy~~~g 556 (564)
|+..+.+.. |..+.+||+|+||+..+
T Consensus 101 g~~~i~~~~~~~N~~a~~~y~k~Gf~~~~ 129 (157)
T 1mk4_A 101 GCTRVKCVTSPVNKVSIAYHTKLGFDIEK 129 (157)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHTTCEECC
T ss_pred CCcEEEEEEcCCCHHHHHHHHHcCCEEcC
Confidence 999987653 44789999999999987
|
| >2fe7_A Probable N-acetyltransferase; structural genomics, pseudomonas aerugi PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa ucbpp-pa14} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-08 Score=89.99 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=64.3
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
+...+|+.+.+ +.+||++.+...... .. ..-.-++ ..+.|+++ |||+|||++||+.++++|+
T Consensus 57 ~~~~~~v~~~~---~~~vG~~~~~~~~~~-----~~--~~~~~~i----~~~~v~p~----~rg~Gig~~ll~~~~~~~~ 118 (166)
T 2fe7_A 57 SPTRALMCLSE---GRPIGYAVFFYSYST-----WL--GRNGIYL----EDLYVTPE----YRGVGAGRRLLRELAREAV 118 (166)
T ss_dssp CSEEEEEEEET---TEEEEEEEEEEEEET-----TT--TEEEEEE----EEEEECGG----GCC--HHHHHHHHHHHHHH
T ss_pred CCceEEEEEeC---CeEEEEEEEEeccCC-----cc--cCCcEEE----EEEEECcc----ccCccHHHHHHHHHHHHHH
Confidence 34556777665 889999999753200 00 1011122 12347776 9999999999999999999
Q ss_pred hcCCCcEEEEe---cCCCcHHHHhhCCCeeeCceE
Q 008466 528 GEHRSRKMAVI---SGVGTRHYYRKLGYELEGPYM 559 (564)
Q Consensus 528 ~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~~m 559 (564)
+ .|+..+.+. .|..+.+||+|+||+..+.+.
T Consensus 119 ~-~g~~~i~l~~~~~n~~a~~~y~k~Gf~~~~~~~ 152 (166)
T 2fe7_A 119 A-NDCGRLEWSVLDWNQPAIDFYRSIGALPQDEWV 152 (166)
T ss_dssp H-TTCSEEEEEEETTCHHHHHHHHHTTCEECTTEE
T ss_pred H-CCCCEEEEEEccCCHHHHHHHHHcCCeEcccEE
Confidence 8 599998654 355789999999999988643
|
| >2eui_A Probable acetyltransferase; dimer, structural genomics, PSI, protein structure initiative; 2.80A {Pseudomonas aeruginosa PAO1} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-08 Score=89.71 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=67.0
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+. .+++.+||++.+...... .. ..-.-+++ .+.|+++ |||+|+|++||+.++++|++
T Consensus 47 ~~~~v~~~-~~~~~~vG~~~~~~~~~~-----~~--~~~~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~- 109 (153)
T 2eui_A 47 SVIYLALA-DEEDRLLGFCQLYPSFSS-----LS--LKRVWILN----DIYVAEE----ARRQLVADHLLQHAKQMARE- 109 (153)
T ss_dssp SEEEEEEC-SSSCCEEEEEEEEEEEET-----TT--TEEEEEEE----EEEECTT----SCHHHHHHHHHHHHHHHHHH-
T ss_pred CeEEEEEe-cCCCcEEEEEEEEecCCC-----Cc--cCceEEEE----EEEEcHH----HhcCChHHHHHHHHHHHHHH-
Confidence 34566665 123789999999754210 00 01112221 2347777 99999999999999999999
Q ss_pred CCCcEEEEec---CCCcHHHHhhCCCeeeCc--eEeeec
Q 008466 530 HRSRKMAVIS---GVGTRHYYRKLGYELEGP--YMVKYL 563 (564)
Q Consensus 530 ~g~~~i~~~s---~~~a~~fY~klGy~~~g~--~m~K~l 563 (564)
.|+..+.+.. |..+.+||+|+||+..+. .+.+.|
T Consensus 110 ~g~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~l 148 (153)
T 2eui_A 110 THAVRMRVSTSVDNEVAQKVYESIGFREDQEFKNYTLPI 148 (153)
T ss_dssp TTEEEEEEEEETTCHHHHHHHHTTTCBCCCSBCCEEEEC
T ss_pred cCCCEEEEEEecCCHHHHHHHHHcCCEEecccEEEEeCc
Confidence 5999886643 457899999999999885 455544
|
| >3eo4_A Uncharacterized protein MJ1062; APC60792.2,MJ_1062,methanocaldococcus jannaschii DSM 2661, S genomics, PSI-2; HET: MES PG6; 2.19A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-08 Score=90.16 Aligned_cols=76 Identities=11% Similarity=0.118 Sum_probs=59.5
Q ss_pred CCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccC-CCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe
Q 008466 460 RQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHG-READKLQHQGYGTLLMEEAERIALGEHRSRKMAVI 538 (564)
Q Consensus 460 ~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~-~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~ 538 (564)
.++.+||++.+...... . -++..+ |.. + |||+|||++||+.++++|++ .|+.+|.+.
T Consensus 73 ~~~~~iG~~~~~~~~~~----------~--~~i~~~-----v~~~~----~rg~Gig~~ll~~~~~~a~~-~g~~~i~l~ 130 (164)
T 3eo4_A 73 NTIRKVGSVNVSQLNTD----------N--PEIGIL-----IGEFF----LWGKHIGRHSVSLVLKWLKN-IGYKKAHAR 130 (164)
T ss_dssp TEEEEEEEEEEECTTSS----------S--CEEEEE-----ECSTT----STTSSHHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCcEEEEEEEEecCCC----------c--EEEEEE-----EcCHH----HcCccHHHHHHHHHHHHHHh-CCCcEEEEE
Confidence 34789999999854311 1 334444 666 5 99999999999999999977 699998665
Q ss_pred ---cCCCcHHHHhhCCCeeeCc
Q 008466 539 ---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 ---s~~~a~~fY~klGy~~~g~ 557 (564)
.|..|.+||+|+||+.+|.
T Consensus 131 v~~~N~~a~~~y~k~GF~~~g~ 152 (164)
T 3eo4_A 131 ILENNIRSIKLFESLGFKKTKK 152 (164)
T ss_dssp EETTCHHHHHHHHHTTCEEEEE
T ss_pred eCCCCHHHHHHHHHCCCEEEee
Confidence 3567899999999999884
|
| >2ozh_A Hypothetical protein XCC2953; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-08 Score=89.20 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=63.7
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+.+.+ +.+||++.+.... .. .-+++ .+.|+++ |||+|||++||+.++++|++ .
T Consensus 46 ~~~~~~~~---~~~vG~~~~~~~~----------~~--~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~-~ 101 (142)
T 2ozh_A 46 LCFGGFVD---GRQVAFARVISDY----------AT--FAYLG----DVFVLPE----HRGRGYSKALMDAVMAHPDL-Q 101 (142)
T ss_dssp EEEEEEET---TEEEEEEEEEECS----------SS--EEEEE----EEEECGG----GTTSSHHHHHHHHHHHCGGG-S
T ss_pred cEEEEEEC---CEEEEEEEEEecC----------CC--cEEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHh-C
Confidence 45677665 8899999997532 00 11222 2337776 99999999999999999998 5
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
|+..+.+.+. .+.+||+|+||+..+.
T Consensus 102 g~~~i~l~~~-~a~~~y~k~GF~~~~~ 127 (142)
T 2ozh_A 102 GLRRFSLATS-DAHGLYARYGFTPPLF 127 (142)
T ss_dssp SCSEEECCCS-SCHHHHHTTTCCSCSS
T ss_pred CCCEEEEecc-hHHHHHHHCCCEEcCC
Confidence 9999988776 8999999999998873
|
| >2fia_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 2.60A {Enterococcus faecalis} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.7e-08 Score=88.61 Aligned_cols=83 Identities=17% Similarity=0.287 Sum_probs=62.7
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+.+++ +.+||++.+....+. . +.+-..+.|+++ |||+|+|++||+.++++|++ .
T Consensus 51 ~~~v~~~~---~~~vG~~~~~~~~~~----------~-----~~~i~~~~v~p~----~rg~Gig~~ll~~~~~~~~~-~ 107 (162)
T 2fia_A 51 RLYLLVHE---EMIFSMATFCMEQEQ----------D-----FVWLKRFATSPN----YIAKGYGSLLFHELEKRAVW-E 107 (162)
T ss_dssp CEEEEEET---TEEEEEEEEEECTTC----------S-----EEEEEEEEECGG----GTTTTHHHHHHHHHHHHHHT-T
T ss_pred cEEEEEEC---CEEEEEEEEeeCCCC----------C-----ceEEEEEEEccc----ccCCCHHHHHHHHHHHHHHH-C
Confidence 45666655 889999999865411 0 111222336776 99999999999999999998 5
Q ss_pred CCcEEEEec---CCCcHHHHhhCCCeeeC
Q 008466 531 RSRKMAVIS---GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~~s---~~~a~~fY~klGy~~~g 556 (564)
|+.++.+.. |..+.+||+|+||+..+
T Consensus 108 g~~~i~~~~~~~N~~a~~~y~k~Gf~~~~ 136 (162)
T 2fia_A 108 GRRKMYAQTNHTNHRMIRFFESKGFTKIH 136 (162)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHCCCEEEe
Confidence 999986653 46789999999999866
|
| >2bue_A AAC(6')-IB; GNAT, transferase, aminoglycoside, fluoroquinolone, acetyltransferase, antibiotic resistance; HET: COA RIO; 1.7A {Escherichia coli} PDB: 1v0c_A* 2vqy_A* 2prb_A* 2qir_A* 2pr8_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.6e-08 Score=90.94 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=66.5
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCC---CccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNV---TCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAER 524 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~---~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~ 524 (564)
++..+|+.+.+ +.+||++.+....+.. +...... -..+++ .+.|+++ |||+|||++||+.+++
T Consensus 76 ~~~~~~v~~~~---~~~vG~~~~~~~~~~~~~~~~~~~~~---~~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~ 141 (202)
T 2bue_A 76 ESVTPYIAMLN---GEPIGYAQSYVALGSGDGWWEEETDP---GVRGID----QLLANAS----QLGKGLGTKLVRALVE 141 (202)
T ss_dssp TTEEEEEEEET---TEEEEEEEEEEGGGCCTTSSTTCCCT---TEEEEE----EEESCGG----GTTSSHHHHHHHHHHH
T ss_pred CCceeEEEEEC---CEEEEEEEEEEecccccccccccCCC---CceEEE----EEEEChh----hccCChHHHHHHHHHH
Confidence 34456776654 8899999998643110 1111111 112333 1236665 9999999999999999
Q ss_pred HHHhcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 525 IALGEHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 525 ~A~~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+|+++.|+.+|.+. .|..+.+||+|+||+.++.
T Consensus 142 ~a~~~~g~~~i~~~v~~~N~~a~~~y~k~GF~~~~~ 177 (202)
T 2bue_A 142 LLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGT 177 (202)
T ss_dssp HHHTSTTCCEEEECCCTTCHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCCCcEEEeCcccCCHHHHHHHHHcCCEEeee
Confidence 99984499999775 3557899999999999874
|
| >1bo4_A Protein (serratia marcescens aminoglycoside-3-N- acetyltransferase); eubacterial aminoglyco resistance, GCN5-related N-acetyltransferase; HET: SPD COA; 2.30A {Serratia marcescens} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-08 Score=91.50 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
++..+|+.+.+ +.+||++.+...... .. ..- +.|-..+.|+++ |||+|||++|++.++++|+
T Consensus 74 ~~~~~~v~~~~---~~~vG~~~~~~~~~~------~~-~~~----~~~i~~~~v~p~----~rg~Gig~~ll~~~~~~a~ 135 (168)
T 1bo4_A 74 KTFIALAAFDQ---EAVVGALAAYVLPKF------EQ-PRS----EIYIYDLAVSGE----HRRQGIATALINLLKHEAN 135 (168)
T ss_dssp SSEEEEEEEET---TEEEEEEEEEEEECS------SS-SCE----EEEEEEEEECTT----STTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEC---CeEEEEEEEEeccCc------cC-CCc----eEEEEEEEECHH----HhcCCHHHHHHHHHHHHHH
Confidence 34456676665 889999998754210 00 001 122222347777 9999999999999999999
Q ss_pred hcCCCcEEEEec---CCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVIS---GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~s---~~~a~~fY~klGy~~~g~ 557 (564)
+ .|++.|.+.. |..+.+||+|+||+.+|.
T Consensus 136 ~-~g~~~i~l~~~~~N~~a~~~y~k~GF~~~g~ 167 (168)
T 1bo4_A 136 A-LGAYVIYVQADYGDDPAVALYTKLGIREEVM 167 (168)
T ss_dssp H-HTCCEEEEECCCSCCSSEEEEEEC-------
T ss_pred h-CCCCEEEEEecCCChHHHHHHHHcCCeeccc
Confidence 9 4999997653 568999999999998874
|
| >3exn_A Probable acetyltransferase; GCN5-related N-acetyltransferase, MCSG, P structural genomics, protein structure initiative; HET: ACO; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=89.64 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=65.2
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.+..+|+.+.+ +.+||++.+....... + .-+++ .+.|+++ |||+|||++|++.++++|+
T Consensus 60 ~~~~~~~~~~~---~~~vG~~~~~~~~~~~-------~---~~~i~----~l~v~p~----~rg~Gig~~ll~~~~~~~~ 118 (160)
T 3exn_A 60 PRRRAFLLFLG---QEPVGYLDAKLGYPEA-------E---DATLS----LLLIRED----HQGRGLGRQALERFAAGLD 118 (160)
T ss_dssp TTEEEEEEEET---TEEEEEEEEEETCSST-------T---CEEEE----EEEECGG----GTTSSHHHHHHHHHHHTCT
T ss_pred CCceEEEEEEC---CeEEEEEEeecccCCC-------C---ceEEE----EEEECHH----HcCCCHHHHHHHHHHHHHh
Confidence 44567777775 8899999998653111 1 12222 1237776 9999999999999999998
Q ss_pred hcCCCcEEEE--e-cCCCcHHHHhhCCCeeeCc------eEeeec
Q 008466 528 GEHRSRKMAV--I-SGVGTRHYYRKLGYELEGP------YMVKYL 563 (564)
Q Consensus 528 ~~~g~~~i~~--~-s~~~a~~fY~klGy~~~g~------~m~K~l 563 (564)
+ +.++.+ . .|..+.+||+|+||+..+. ++.|.|
T Consensus 119 ~---~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~~L 160 (160)
T 3exn_A 119 G---VRRLYAVVYGHNPKAKAFFQAQGFRYVKDGGPTLTWYVRPL 160 (160)
T ss_dssp T---CCEEEEEEESSCHHHHHHHHHTTCEEEEECSTTEEEEEEEC
T ss_pred h---CCeEEEEEeeCCHHHHHHHHHCCCEEcccCCCeEEEEeccC
Confidence 7 455543 3 3557899999999999874 555554
|
| >2o28_A Glucosamine 6-phosphate N-acetyltransferase; structural genomics, structural genomics consortium, SGC; HET: 16G COA; 1.80A {Homo sapiens} PDB: 2huz_A* 3cxq_A* 3cxs_A 3cxp_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.2e-08 Score=91.63 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=64.8
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+++... .+++.+||++.+....+. .. ...-.-+++ .+.|+++ |||+|||++||++++++|++
T Consensus 84 ~~~~v~~~-~~~g~ivG~~~~~~~~~~--~~----~~~~~~~i~----~~~V~p~----~rg~Gig~~Ll~~~~~~a~~- 147 (184)
T 2o28_A 84 YYVTVVED-VTLGQIVATATLIIEHKF--IH----SCAKRGRVE----DVVVSDE----CRGKQLGKLLLSTLTLLSKK- 147 (184)
T ss_dssp EEEEEEEE-TTTTEEEEEEEEEEEECS--HH----HHCEEEEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHH-
T ss_pred eEEEEEEe-CCCCcEEEEEEEEecccc--CC----CCCCcEEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-
Confidence 34444444 224889999999754210 00 000111222 2347776 99999999999999999999
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+|+.+|.+.......+||+|+||+..+.
T Consensus 148 ~g~~~i~l~~~~~n~~~y~k~GF~~~~~ 175 (184)
T 2o28_A 148 LNCYKITLECLPQNVGFYKKFGYTVSEE 175 (184)
T ss_dssp TTEEEEEEEECGGGHHHHHTTTCEECSS
T ss_pred CCCCEEEEEecHHHHHHHHHCCCeeecc
Confidence 5999998877666699999999999986
|
| >3juw_A Probable GNAT-family acetyltransferase; structural genomics, APC60242, acetyltransferas protein structure initiative; HET: MSE; 2.11A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-08 Score=89.92 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=60.7
Q ss_pred CCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe-
Q 008466 460 RQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI- 538 (564)
Q Consensus 460 ~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~- 538 (564)
+++.+||++.+..... ...++... .-++.+| |+++ |||+|||++||+.++++|+++.|+.+|.+.
T Consensus 74 ~~g~~vG~~~~~~~~~-~~~~~~~~----~~~~~~~-----v~p~----~rg~Gig~~ll~~~~~~a~~~~g~~~i~l~v 139 (175)
T 3juw_A 74 VSGEMRGEAGFQFRRR-GFGPGFDN----HPEAAWA-----VASA----HQGRGLAAEAMQALLAHHDRSSGRQRVVALI 139 (175)
T ss_dssp TTCCEEEEEEEECCCC-SSCTTTTT----SCEEEEE-----ECGG----GTTSSHHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred CCCcEEEEeeeEEeec-cccCCCCC----CceEEEE-----ECHH----HhCCCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 4578999999986431 11122111 1223333 6766 999999999999999999984488888654
Q ss_pred --cCCCcHHHHhhCCCeeeCc
Q 008466 539 --SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 --s~~~a~~fY~klGy~~~g~ 557 (564)
.|..|++||+|+||+.+|.
T Consensus 140 ~~~N~~a~~~y~k~GF~~~~~ 160 (175)
T 3juw_A 140 ARSNLPSLRLAERLGFRGYSD 160 (175)
T ss_dssp ETTCHHHHHHHHHTTCEEEEE
T ss_pred CCCChhHHHHHHHcCCeEecc
Confidence 3558899999999999885
|
| >1ygh_A ADA4, protein (transcriptional activator GCN5); transcriptional regulation, histone acetylation; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=5.8e-08 Score=89.12 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=58.8
Q ss_pred EEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCC
Q 008466 453 FLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRS 532 (564)
Q Consensus 453 fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~ 532 (564)
++..++ +.+||++.+.... . .....+-+ +.|+++ |||+|||++||++++++|++..|+
T Consensus 51 ~v~~~~---~~ivG~~~~~~~~-~-------~~~~~i~~-------l~V~p~----~rg~Gig~~ll~~~~~~a~~~~g~ 108 (164)
T 1ygh_A 51 AVIRKP---LTVVGGITYRPFD-K-------REFAEIVF-------CAISST----EQVRGYGAHLMNHLKDYVRNTSNI 108 (164)
T ss_dssp EEEETT---TEEEEEEEEEEEG-G-------GTEEEEEE-------EEECTT----CCCTTHHHHHHHHHHHHHHHHSCC
T ss_pred EEECCC---CEEEEEEEEEEcC-C-------CCceEEEE-------EEECHH----HcCCCHHHHHHHHHHHHHHhcCCc
Confidence 555443 7899999987431 0 00111111 247777 999999999999999999982388
Q ss_pred cEEEEecCCCcHHHHhhCCCeeeC
Q 008466 533 RKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 533 ~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
..+.+.+...|.+||+|+||+..+
T Consensus 109 ~~l~v~~~n~a~~~y~k~GF~~~~ 132 (164)
T 1ygh_A 109 KYFLTYADNYAIGYFKKQGFTKEI 132 (164)
T ss_dssp CEEEEEECGGGHHHHHHTTCBSSC
T ss_pred eEEEEecCChHHHHHHHcCCEecc
Confidence 866665433899999999999866
|
| >2fck_A Ribosomal-protein-serine acetyltransferase, putat; ribosomal-protein structural genomics, PSI, protein structure initiative; HET: MSE; 1.70A {Vibrio cholerae o1 biovar eltor} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-08 Score=90.86 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=63.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
...|+.+.. +++.+||++.+..... ..-.-++.+ .|+++ |||+|||++||+.++++|+++
T Consensus 70 ~~~~~i~~~-~~~~~vG~~~~~~~~~----------~~~~~~i~~-----~v~~~----~rg~Gig~~ll~~~~~~a~~~ 129 (181)
T 2fck_A 70 AYGFGVFER-QTQTLVGMVAINEFYH----------TFNMASLGY-----WIGDR----YQRQGYGKEALTALILFCFER 129 (181)
T ss_dssp CEEEEEEET-TTCCEEEEEEEEEEEG----------GGTEEEEEE-----EECHH----HHTTTHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEC-CCCcEEEEEEEEEecc----------cCCeEEEEE-----EEChh----hcCCChHHHHHHHHHHHHHHh
Confidence 345555542 3478999999974321 111122222 36655 999999999999999999984
Q ss_pred CCCcEEEEec---CCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVIS---GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s---~~~a~~fY~klGy~~~g~ 557 (564)
.|+.+|.+.. |..|.+||+|+||+.+|.
T Consensus 130 ~g~~~i~~~~~~~N~~a~~~y~k~GF~~~~~ 160 (181)
T 2fck_A 130 LELTRLEIVCDPENVPSQALALRCGANREQL 160 (181)
T ss_dssp SCCSEEEEEECTTCHHHHHHHHHTTCEEEEE
T ss_pred cCceEEEEEEccCCHHHHHHHHHcCCEEEEE
Confidence 4999987653 567899999999999884
|
| >2g0b_A FEEM; N-acyl transferase, environmental DNA, protein-product compl antibiotic synthase, transferase; HET: NLT; 3.00A {Uncultured bacterium} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-08 Score=97.76 Aligned_cols=102 Identities=17% Similarity=0.223 Sum_probs=73.3
Q ss_pred EeeCCCeEEEEEEeecCCCeEEEEEEEEecCCCC------CccccC---CccceeeeeeeecccccccCCCchhh-----
Q 008466 444 YVANEGWETFLSYEDTRQDILVGLLRLRKCGRNV------TCPELM---GKCSIVRELHVYGTAVPVHGREADKL----- 509 (564)
Q Consensus 444 y~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~------~~~el~---~~~~~~relhvyg~~~~v~~~~~~~~----- 509 (564)
|.+...+.+|+++.+ +.+||++++..+.... +..|+. ....-+-|+- -+.|.++ |
T Consensus 43 ~~~~~~~~~~~a~~~---g~ivG~~~l~~~~~~~lp~~~~~~~e~~~~~~~~~~~~EI~----RLaV~~~----~~~~~~ 111 (198)
T 2g0b_A 43 FLEGPSATTFGLFNG---EVLYGTISIINDGAQGLPMDSIYAVELAAWRGEGKKLAEVV----QFAMDHT----LYEAVA 111 (198)
T ss_dssp HHTSTTEEEEEEEET---TEEEEEEEEEECBTTBCTTHHHHHHHHHHHHHTTCCEEEEE----EEEECTT----SSCCCC
T ss_pred hhcCCCcEEEEEEEC---CEEEEEEEEEeCCCcCCchhhhchhhhhhhhhcCCcEEEEE----EEEEchH----Hhhccc
Confidence 344556788888866 8999999999875311 011110 0011122322 2237776 8
Q ss_pred ---hhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 510 ---QHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 510 ---q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
||+|+|+.||+.++.+|++ +|+..+.+..|..+..||+|+||+..|+
T Consensus 112 ~~~rg~gig~~L~~~a~~~a~~-~g~~~i~levn~ra~~FY~k~GF~~~g~ 161 (198)
T 2g0b_A 112 GAKPSPFEAASLFTMVLTYALE-THIDYLCISINPKHDTFYSLLGFTQIGA 161 (198)
T ss_dssp ----CGGGCHHHHHHHHHHHHH-TTCSEEEEEECGGGHHHHHHTTCEEEEE
T ss_pred ccccCChHHHHHHHHHHHHHHH-cCCCEEEEEeCHHHHHHHHHCCCEEeeC
Confidence 9999999999999999999 5999999988999999999999998874
|
| >1nsl_A Probable acetyltransferase; structural genomics, hexamer, alpha-beta, PSI, protein struc initiative, midwest center for structural genomics; 2.70A {Bacillus subtilis} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.1e-08 Score=90.58 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=62.7
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
...|+.+.+ +.+||++.+...... .-.-++.. .|+++ |||+|||++|++.++++|.++
T Consensus 68 ~~~~~~~~~---~~~vG~~~~~~~~~~----------~~~~~i~~-----~v~p~----~rg~Gig~~ll~~~~~~a~~~ 125 (184)
T 1nsl_A 68 GIEAGLLYD---GSLCGMISLHNLDQV----------NRKAEIGY-----WIAKE----FEGKGIITAACRKLITYAFEE 125 (184)
T ss_dssp CEEEEEEET---TEEEEEEEEEEEETT----------TTEEEEEE-----EECGG----GTTSSHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEC---CEEEEEEEEEecccc----------cCeEEEEE-----EEChh----hcCCCHHHHHHHHHHHHHHHh
Confidence 455666664 789999999743211 01122222 36665 999999999999999999543
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.|+.+|.+. .|..+..||+|+||+.+|.
T Consensus 126 ~g~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 156 (184)
T 1nsl_A 126 LELNRVAICAAVGNEKSRAVPERIGFLEEGK 156 (184)
T ss_dssp SCCSEEEEEEETTCHHHHHHHHHHTCEEEEE
T ss_pred cCcEEEEEEEecCCHHHHHHHHHcCCEEEEE
Confidence 699998665 3667899999999999874
|
| >3igr_A Ribosomal-protein-S5-alanine N-acetyltransferase; fisch MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.00A {Vibrio fischeri} SCOP: d.108.1.0 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-08 Score=90.15 Aligned_cols=87 Identities=10% Similarity=0.127 Sum_probs=61.7
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.|+... .+++.+||++.+...... ..-.-++..+ |+++ |||+|||++||+.++++|.++.|
T Consensus 69 ~~~i~~-~~~~~~vG~~~~~~~~~~---------~~~~~~i~~~-----v~~~----~rg~Gig~~ll~~~~~~a~~~~g 129 (184)
T 3igr_A 69 YFVVVD-KNEHKIIGTVSYSNITRF---------PFHAGHVGYS-----LDSE----YQGKGIMRRAVNVTIDWMFKAQN 129 (184)
T ss_dssp EEEEEE-TTTTEEEEEEEEEEEECT---------TTCEEEEEEE-----ECGG----GTTSSHHHHHHHHHHHHHHHTSC
T ss_pred EEEEEE-CCCCeEEEEEEeeecccc---------cCceEEEEEE-----EChh----hccCcHHHHHHHHHHHHHHhhCC
Confidence 344433 245789999999743211 1112233333 6665 99999999999999999944369
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+.+|.+. .|..|.+||+|+||+.+|.
T Consensus 130 ~~~i~~~v~~~N~~a~~~y~k~GF~~~g~ 158 (184)
T 3igr_A 130 LHRIMAAYIPRNEKSAKVLAALGFVKEGE 158 (184)
T ss_dssp CSEEEEEECTTCHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEEecCCCHHHHHHHHHcCCEeeee
Confidence 9998765 3567899999999999884
|
| >2atr_A Acetyltransferase, GNAT family; MCSG, structural genomics, PSI, protein structure INIT midwest center for structural genomics; 2.01A {Streptococcus pneumoniae} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=89.25 Aligned_cols=84 Identities=26% Similarity=0.325 Sum_probs=61.5
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+++ +.+||++.+.... .+ .-+++ .+.|+++ |||+|||++|++.++++|++
T Consensus 42 ~~~~~~~~~---~~~vG~~~~~~~~---------~~---~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~- 97 (138)
T 2atr_A 42 LVIYLALDG---DAVVGLIRLVGDG---------FS---SVFVQ----DLIVLPS----YQRQGIGSSLMKEALGNFKE- 97 (138)
T ss_dssp SEEEEEEET---TEEEEEEEEEECS---------SS---EEEEE----EEEECTT----SCSSSHHHHHHHHHHGGGTT-
T ss_pred eEEEEEEEC---CeeEEEEEEEeCC---------CC---eEEEE----EEEEchh----hcCCCHHHHHHHHHHHHHHh-
Confidence 445677665 8899999987432 00 11221 2337777 99999999999999999998
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.|+..+...+|..+.+||+|+||+..+.
T Consensus 98 ~~~~~l~~~~n~~a~~~y~k~Gf~~~~~ 125 (138)
T 2atr_A 98 AYQVQLATEETEKNVGFYRSMGFEILST 125 (138)
T ss_dssp CSEEECCCCCCHHHHHHHHHTTCCCGGG
T ss_pred cCeEEEEeCCChHHHHHHHHcCCcccce
Confidence 4874443334778899999999999873
|
| >1yx0_A Hypothetical protein YSNE; NESG, GFT structral genomics, SR220, structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis subsp} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.7e-08 Score=89.33 Aligned_cols=87 Identities=14% Similarity=0.222 Sum_probs=65.8
Q ss_pred CCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHH
Q 008466 447 NEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIA 526 (564)
Q Consensus 447 ~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A 526 (564)
.++..+|+.+++ +.+||++.+.... ++ .-++ ..+.|+++ |||+|||+.||+.++++|
T Consensus 43 ~~~~~~~v~~~~---~~~vG~~~~~~~~---------~~---~~~i----~~~~V~p~----~rg~Gig~~ll~~~~~~~ 99 (159)
T 1yx0_A 43 GPEITFWSAWEG---DELAGCGALKELD---------TR---HGEI----KSMRTSAS----HLRKGVAKQVLQHIIEEA 99 (159)
T ss_dssp SSSCEEEEEECS---SSEEEEEEEEEEE---------TT---EEEC----CCCCCSTT----TCCSCHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEC---CEEEEEEEEEEcC---------CC---cEEE----EEEEECHh----hcCCCHHHHHHHHHHHHH
Confidence 344667777765 7899999998542 00 1122 22347776 999999999999999999
Q ss_pred HhcCCCcEEEEec-----CCCcHHHHhhCCCeeeCc
Q 008466 527 LGEHRSRKMAVIS-----GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 527 ~~~~g~~~i~~~s-----~~~a~~fY~klGy~~~g~ 557 (564)
++. |+..|.+.. |..+..||+|+||+..+.
T Consensus 100 ~~~-g~~~i~l~~~~~~~N~~a~~~y~k~Gf~~~~~ 134 (159)
T 1yx0_A 100 EKR-GYERLSLETGSMASFEPARKLYESFGFQYCEP 134 (159)
T ss_dssp HHH-TCSCEECCCSSCTTHHHHHHHHHTTSEEECCC
T ss_pred HhC-CCcEEEEEecccccCchHHHHHHHcCCEEccc
Confidence 995 999998765 345899999999999874
|
| >3owc_A Probable acetyltransferase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: COA; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-08 Score=90.27 Aligned_cols=88 Identities=20% Similarity=0.274 Sum_probs=66.2
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
++..+|+.+.+ +.+||++.+.... . .+ .-+++ .+.|+++ |||+|||++|++.++++|+
T Consensus 66 ~~~~~~v~~~~---~~~vG~~~~~~~~-~-------~~---~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~a~ 123 (188)
T 3owc_A 66 PLRLLWSACRD---DQVIGHCQLLFDR-R-------NG---VVRLA----RIVLAPS----ARGQGLGLPMLEALLAEAF 123 (188)
T ss_dssp CSEEEEEEEET---TEEEEEEEEEEET-T-------TT---EEEEE----EEEECGG----GTTSSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEC---CcEEEEEEEEecC-C-------CC---EEEEE----EEEEcHH----HhCCChhHHHHHHHHHHHH
Confidence 44566777765 8899999998552 0 11 12333 1236766 9999999999999999999
Q ss_pred hcCCCcEEEEec---CCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVIS---GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~s---~~~a~~fY~klGy~~~g~ 557 (564)
++.|+.+|.+.. |..+.+||+|+||+.++.
T Consensus 124 ~~~g~~~i~~~~~~~N~~a~~~y~k~GF~~~~~ 156 (188)
T 3owc_A 124 ADADIERVELNVYDWNAAARHLYRRAGFREEGL 156 (188)
T ss_dssp HSTTCCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred HhhCceEEEEEEecCCHHHHHHHHHcCCEEeee
Confidence 844999986653 567899999999999874
|
| >2b5g_A Diamine acetyltransferase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: ALY; 1.70A {Homo sapiens} SCOP: d.108.1.1 PDB: 2b4d_A* 2jev_A* 2g3t_A 2f5i_A 2b3u_A 2b3v_A* 2b4b_A* 2b58_A* 2fxf_A* 3bj7_A* 3bj8_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-08 Score=90.47 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=57.7
Q ss_pred EEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEec---C
Q 008466 464 LVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS---G 540 (564)
Q Consensus 464 lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s---~ 540 (564)
+||++.+...... .. . -+.|-..+.|+++ |||+|||++||+.++++|++. |+++|.+.. |
T Consensus 71 ivG~~~~~~~~~~-----~~--~-----~~~~i~~~~v~p~----~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N 133 (171)
T 2b5g_A 71 IVGFAMYYFTYDP-----WI--G-----KLLYLEDFFVMSD----YRGFGIGSEILKNLSQVAMRC-RCSSMHFLVAEWN 133 (171)
T ss_dssp EEEEEEEEEEEET-----TT--E-----EEEEEEEEEECGG----GCSSSHHHHHHHHHHHHHHHH-TCSEEEEEEETTC
T ss_pred eEEEEEEEeecCC-----cC--C-----ceEEEEEEEECHh----hhCCCHHHHHHHHHHHHHHHC-CCCEEEEEEcccC
Confidence 7999999754200 00 0 1122223347776 999999999999999999984 999987653 6
Q ss_pred CCcHHHHhhCCCeeeCc
Q 008466 541 VGTRHYYRKLGYELEGP 557 (564)
Q Consensus 541 ~~a~~fY~klGy~~~g~ 557 (564)
..+..||+|+||+..+.
T Consensus 134 ~~a~~~y~k~Gf~~~~~ 150 (171)
T 2b5g_A 134 EPSINFYKRRGASDLSS 150 (171)
T ss_dssp HHHHHHHHTTTCEEHHH
T ss_pred HHHHHHHHHcCCEeccc
Confidence 68899999999999885
|
| >1s7k_A Acetyl transferase; GNAT; 1.80A {Salmonella typhimurium} SCOP: d.108.1.1 PDB: 1s7l_A* 1s7n_A* 1s7f_A 1z9u_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.6e-08 Score=89.79 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=63.2
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
...|+.+.+ +.+||++.+..... ..-.-++.+ .|+++ |||+|||++|++.++++|++.
T Consensus 70 ~~~~~~~~~---~~~vG~~~~~~~~~----------~~~~~~i~~-----~v~~~----~rg~Gig~~ll~~~~~~a~~~ 127 (182)
T 1s7k_A 70 AKMYLIFCQ---NEMAGVLSFNAIEP----------INKAAYIGY-----WLDES----FQGQGIMSQSLQALMTHYARR 127 (182)
T ss_dssp CEEEEEEET---TEEEEEEEEEEEET----------TTTEEEEEE-----EECGG----GCSSSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEC---CEEEEEEEEEEccC----------CCceEEEEE-----EECHh----hcCCCHHHHHHHHHHHHHHhh
Confidence 455666654 88999999985421 111122322 36665 999999999999999999874
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.|+.+|.+. .|..+.+||+|+||+..+.
T Consensus 128 ~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 158 (182)
T 1s7k_A 128 GDIRRFVIKCRVDNQASNAVARRNHFTLEGC 158 (182)
T ss_dssp CSCCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred CCccEEEEEecCCCHHHHHHHHHCCCEEEee
Confidence 599998665 3557899999999999874
|
| >3r9f_A MCCE protein; microcin C7, acetyltransferase, SELF immunity, resistance, A coenzyme A, transferase; HET: COA GSU; 1.20A {Escherichia coli} PDB: 3r95_A* 3r96_A* 3r9e_A* 3r9g_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.8e-08 Score=90.96 Aligned_cols=86 Identities=9% Similarity=0.088 Sum_probs=63.0
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
...|+.+++ +.+||++.+...... .-.-++..+ |+++ |||+|||+.||+.+.++|.++
T Consensus 78 ~~~~~i~~~---~~~iG~~~~~~~~~~----------~~~~~i~~~-----v~~~----~~g~Gig~~ll~~~~~~a~~~ 135 (188)
T 3r9f_A 78 ALILFIKYK---TKIAGVVSFNIIDHA----------NKTAYIGYW-----LGAN----FQGKGIVTNAINKLIQEYGDS 135 (188)
T ss_dssp CEEEEEEET---TEEEEEEEEEEEETT----------TTEEEEEEE-----ECGG----GTTSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEEEEC---CEEEEEEEEEEecCC----------CCEEEEEEE-----EChh----hcCCCHHHHHHHHHHHHHHHh
Confidence 344565544 889999999743211 111233322 6665 999999999999999999875
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.|+++|.+. .|..|.+||+|+||+.+|.
T Consensus 136 ~~~~~i~~~v~~~N~~a~~~y~k~GF~~~g~ 166 (188)
T 3r9f_A 136 GVIKRFVIKCIVDNKKSNATALRCGFTLEGV 166 (188)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred cCeEEEEEEecCCCHHHHHHHHHCCCeEEeE
Confidence 599998654 4667899999999999884
|
| >3ld2_A SMU.2055, putative acetyltransferase; HET: COA; 2.50A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.4e-08 Score=90.92 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=64.4
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.+..+|+.+++ +.+||++.+....+. . ...-..+. .+.|+.+ |||+|||++||+.++++|+
T Consensus 79 ~~~~~~v~~~~---~~~vG~~~~~~~~~~------~-~~~~~~~~-----~~~V~p~----~rg~Gig~~ll~~~~~~a~ 139 (197)
T 3ld2_A 79 SNTHFLVAKIK---DKIVGVLDYSSLYPF------P-SGQHIVTF-----GIAVAEK----ERRKGIGRALVQIFLNEVK 139 (197)
T ss_dssp TTCEEEEEEES---SCEEEEEEEEESCSS------G-GGTTEEEE-----EEEECGG----GTTSSHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeC---CCEEEEEEEEeccCC------C-CCCeEEEE-----EEEEcHH----HcCCCHHHHHHHHHHHHHH
Confidence 34566777765 789999999864210 0 01111112 2347776 9999999999999999999
Q ss_pred hcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+ . +..|.+. .|..+.+||+|+||+..+.
T Consensus 140 ~-~-~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 170 (197)
T 3ld2_A 140 S-D-YQKVLIHVLSSNQEAVLFYKKLGFDLEAR 170 (197)
T ss_dssp T-T-CSEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred H-H-HHeEEEEeeCCCHHHHHHHHHCCCEEeee
Confidence 8 5 8888654 5667899999999999873
|
| >4fd4_A Arylalkylamine N-acetyltransferase like 5B; GNAT; 1.95A {Aedes aegypti} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-08 Score=93.40 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=50.0
Q ss_pred eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe-cCCCcHHHHhhCCCeeeCc
Q 008466 494 VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 494 vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-s~~~a~~fY~klGy~~~g~ 557 (564)
.|-..+.|+++ |||+|||++||++++++|++. |+..+.+. ++..+.+||+|+||+..+.
T Consensus 127 ~~l~~l~V~p~----~rg~Gig~~Ll~~~~~~a~~~-g~~~i~~~~~n~~a~~~Y~k~GF~~~~~ 186 (217)
T 4fd4_A 127 YHVHILAVDPT----YRGHSLGQRLLQFQMDLSKKL-GFKAISGDFTSVFSVKLAEKLGMECISQ 186 (217)
T ss_dssp EEEEEEEECTT----SCSSCHHHHHHHHHHHHHHHH-TCSEEEEEECSHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEEECHH----HccCCHHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHCCCeEEEe
Confidence 33345568887 999999999999999999994 99998764 4778899999999999874
|
| >1yvk_A Hypothetical protein BSU33890; ALPHS-beta protein, structural genomics, PSI, protein structure initiative; HET: COA; 3.01A {Bacillus subtilis subsp} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=7.1e-08 Score=88.44 Aligned_cols=82 Identities=23% Similarity=0.382 Sum_probs=62.5
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+.+++ +.+||++.+.... ... -+++ .+.|.++ |||+|+|++|++.++++|++ .
T Consensus 40 ~~~v~~~~---~~~vG~~~~~~~~---------~~~---~~i~----~~~V~p~----~rg~Gig~~Ll~~~~~~~~~-~ 95 (163)
T 1yvk_A 40 ECYTAWAG---DELAGVYVLLKTR---------PQT---VEIV----NIAVKES----LQKKGFGKQLVLDAIEKAKK-L 95 (163)
T ss_dssp EEEEEEET---TEEEEEEEEEECS---------TTE---EEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHH-T
T ss_pred eEEEEEEC---CEEEEEEEEEecC---------CCe---EEEE----EEEECHH----HhCCCHHHHHHHHHHHHHHH-C
Confidence 46777765 7899999998532 111 1221 2337776 99999999999999999999 5
Q ss_pred CCcEEEEecCC---CcHHHHhhCCCeeeC
Q 008466 531 RSRKMAVISGV---GTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~~s~~---~a~~fY~klGy~~~g 556 (564)
|+..|.+.+.. .|..||+|+||+..+
T Consensus 96 g~~~i~l~~~~~n~~a~~~y~k~GF~~~~ 124 (163)
T 1yvk_A 96 GADTIEIGTGNSSIHQLSLYQKCGFRIQA 124 (163)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCEEec
Confidence 99999776543 389999999999876
|
| >3h4q_A Putative acetyltransferase; NP_371943.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE P33; 2.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.4e-08 Score=88.73 Aligned_cols=91 Identities=10% Similarity=0.117 Sum_probs=63.4
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCcccc---CCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPEL---MGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el---~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.+|+...+ +.+||++.+....+.. -..+ .... -+.|-..+.|+.+ | ||||++||++++++|+
T Consensus 69 ~~~v~~~~---~~ivG~~~~~~~~~~~-~~~~~w~~~~~-----~~~~i~~l~V~p~----~--~Gig~~Ll~~~~~~a~ 133 (188)
T 3h4q_A 69 YLYVLEEN---DKIYGFIVVDQDQAEW-YDDIDWPVNRE-----GAFVIHRLTGSKE----Y--KGAATELFNYVIDVVK 133 (188)
T ss_dssp CEEEEEET---TEEEEEEEEESCCCGG-GGGSCCSSCCT-----TCEEEEEEECCSS----C--TTHHHHHHHHHHHHHH
T ss_pred cEEEEEEC---CEEEEEEEEEccCccc-ccccccccCCC-----CeEEEEEEEECCc----c--CcHHHHHHHHHHHHHH
Confidence 34666655 8899999998654211 1110 0001 1122223347877 7 9999999999999999
Q ss_pred hcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+ .|+..|.+. +|..|.+||+|+||+..|.
T Consensus 134 ~-~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 165 (188)
T 3h4q_A 134 A-RGAEVILTDTFALNKPAQGLFAKFGFHKVGE 165 (188)
T ss_dssp H-TTCCEEEEEGGGSCGGGTHHHHHTTCEEC--
T ss_pred H-cCCCEEEEEEecCCHHHHHHHHHCCCeEece
Confidence 9 599999887 6778999999999999884
|
| >2cnt_A Modification of 30S ribosomal subunit protein S18; N-alpha acetylation, GCN5-N-acetyltransferase, ribosomal Pro acetyltransferase, GNAT; HET: COA; 2.4A {Salmonella typhimurium} PDB: 2cnm_A* 2cns_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-08 Score=89.91 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=63.6
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
...|+.+++ +.+||++.+.... +.. ++ ..+.|.++ |||+|||++|++.++++|++
T Consensus 40 ~~~~v~~~~---~~~vG~~~~~~~~----------~~~---~i----~~~~v~p~----~rg~Gig~~ll~~~~~~~~~- 94 (160)
T 2cnt_A 40 YLNLKLTAD---DRMAAFAITQVVL----------DEA---TL----FNIAVDPD----FQRRGLGRMLLEHLIDELET- 94 (160)
T ss_dssp BCCEEEEET---TEEEEEEEEEEET----------TEE---EE----EEEEECGG----GCSSSHHHHHHHHHHHHHHH-
T ss_pred ccEEEEEEC---CeEEEEEEEEecC----------Cce---EE----EEEEECHH----HcCCCHHHHHHHHHHHHHHH-
Confidence 345676665 8899999998543 111 11 22336776 99999999999999999999
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.|+.+|.+. .|..+..||+|+||+..+.
T Consensus 95 ~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 125 (160)
T 2cnt_A 95 RGVVTLWLEVRASNAAAIALYESLGFNEATI 125 (160)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHHTCEEEEE
T ss_pred cCCcEEEEEEecCCHHHHHHHHHCCCEEEEE
Confidence 599998765 4568899999999999873
|
| >2r1i_A GCN5-related N-acetyltransferase; YP_831484.1, putative acetyltransferase, arthrobacter SP. FB acetyltransferase (GNAT) family; HET: MSE; 1.65A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-08 Score=89.95 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=59.4
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEec--
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS-- 539 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s-- 539 (564)
+.+||++.+........ .. . +.|...+.|+++ |||+|||++|++.++++|++ .|+..|.+..
T Consensus 77 ~~~vG~~~~~~~~~~~~----~~-----~--~~~i~~~~v~p~----~rg~Gig~~ll~~~~~~a~~-~g~~~i~~~~~~ 140 (172)
T 2r1i_A 77 EPPTGLAVLSFRPNVWY----PG-----P--VAILDELYVRPG----RRGHRLGSALLAASCGLVRS-RGGALLEINVDG 140 (172)
T ss_dssp TTTCEEEEEEEECCTTC----SS-----C--EEEEEEEECCSS----HHHHHHHHHHHHHHHHHHHH-TTCCEEEEEEET
T ss_pred CeeEEEEEEEeccCCCC----CC-----c--eEEEEEEEECcc----cccCCHHHHHHHHHHHHHHH-CCCCEEEEEEcC
Confidence 77899999986531100 00 0 112222447877 99999999999999999999 5999986653
Q ss_pred -CCCcHHHHhhCCCeeeCc
Q 008466 540 -GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 540 -~~~a~~fY~klGy~~~g~ 557 (564)
|..+.+||+|+||+..+.
T Consensus 141 ~n~~a~~~y~k~Gf~~~~~ 159 (172)
T 2r1i_A 141 EDTDARRFYEARGFTNTEP 159 (172)
T ss_dssp TCHHHHHHHHTTTCBSSCT
T ss_pred CCHHHHHHHHHCCCEeccc
Confidence 557899999999999875
|
| >3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA, spermine, spermidine, transferase; HET: COA; 1.50A {Paramecium bursaria chlorella virus 1} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.1e-08 Score=91.92 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=48.2
Q ss_pred ccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEec-CCCcHHHHhhCCCeeeCc
Q 008466 499 VPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS-GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 499 ~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s-~~~a~~fY~klGy~~~g~ 557 (564)
+.|+++ |||+|||++||++++++|++ +|+..+.+.+ |..|.+||+|+||+..+.
T Consensus 113 l~V~p~----~rg~Gig~~Ll~~~~~~a~~-~g~~~i~l~~~n~~a~~~y~k~GF~~~~~ 167 (197)
T 3qb8_A 113 FAIGSE----VTGKGLATKLLKKTIEESSS-HGFKYIYGDCTNIISQNMFEKHGFETVGS 167 (197)
T ss_dssp EEEEES----SCSSSHHHHHHHHHHHHHHH-TTCCEEEEEECSHHHHHHHHHTTCEEEEE
T ss_pred EEECHH----HcCCCHHHHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHCCCeEEEE
Confidence 447777 99999999999999999999 5999998876 778899999999999874
|
| >2q04_A Acetoin utilization protein; ZP_00540088.1, structural genom joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.33A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-08 Score=96.08 Aligned_cols=96 Identities=15% Similarity=0.036 Sum_probs=66.4
Q ss_pred CCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHH
Q 008466 447 NEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERI 525 (564)
Q Consensus 447 ~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~ 525 (564)
..+..+|++++| +.+||++.+..+.+.....+- ...-+-|+. +| |+++ |||+|||++||++++++
T Consensus 58 ~~~~~~~vA~~d---g~iVG~~~l~~~~~~~~~~~~--~~~~~~el~~i~-----V~p~----~RG~GIG~~Ll~~~~~~ 123 (211)
T 2q04_A 58 LEEGRIIIARQG---NDIIGYVTFLYPDPYETWSEG--NNPYILELGAIE-----VAAR----FRGQQIGKKLLEVSMLD 123 (211)
T ss_dssp SSSCEEEEEEET---TEEEEEEEEECCCTTSGGGCS--SCTTEEEEEEEE-----ECGG----GTTSCHHHHHHHHHHTS
T ss_pred CCCcEEEEEEEC---CEEEEEEEEEeCCcccccccc--cccceEEEeEEE-----ECHH----HcCCCHHHHHHHHHHHH
Confidence 444577888876 889999999765321111110 011234453 56 8877 99999999999999999
Q ss_pred HHhcCCCcEEEE----------------ecCCCcHHHHhhCCCeeeCc
Q 008466 526 ALGEHRSRKMAV----------------ISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 526 A~~~~g~~~i~~----------------~s~~~a~~fY~klGy~~~g~ 557 (564)
|+.. ++..+.. ..|..|..||+|+||+.+|.
T Consensus 124 a~~~-~~i~l~~~~~~~~~~~~~~L~V~~~N~~A~~lY~k~GF~~~g~ 170 (211)
T 2q04_A 124 PAME-HYLILTTEYYWHWDLKGSGLSVWDYRKIMEKMMNHGGLVFFPT 170 (211)
T ss_dssp GGGG-GSEEEEEECGGGCCHHHHCCCHHHHHHHHHHHHHHTTCEEECC
T ss_pred HHHc-CCceeeeehhhhcCccccccchhhhhHHHHHHHHHCCCEEecc
Confidence 9874 6533321 13567899999999999984
|
| >3fbu_A Acetyltransferase, GNAT family; structur genomics, PSI2, MCSG, protein structure initiative, midwest for structural genomics; HET: COA; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.2e-08 Score=87.04 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=62.2
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.|+... .+++.+||++.+.... .. . .-++..+ |+++ |||+|||+.||+.++++|+++.|
T Consensus 58 ~~~i~~-~~~~~~iG~~~~~~~~-~~-------~---~~~i~~~-----v~~~----~rg~Gig~~ll~~~~~~a~~~~~ 116 (168)
T 3fbu_A 58 NFPVIL-IGENILVGHIVFHKYF-GE-------H---TYEIGWV-----FNPK----YFNKGYASEAAQATLKYGFKEMK 116 (168)
T ss_dssp EEEEEE-TTTTEEEEEEEEEEEE-TT-------T---EEEEEEE-----ECGG----GTTSSHHHHHHHHHHHHHHHTSC
T ss_pred eEEEEE-CCCCCEEEEEEEEeec-CC-------C---cEEEEEE-----ECHH----HhcCCHHHHHHHHHHHHHHhhCC
Confidence 344443 2458899999997542 10 1 1233332 5665 99999999999999999988459
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+.+|.+. .|..|.+||+|+||+.+|.
T Consensus 117 ~~~i~l~v~~~N~~a~~~y~k~GF~~~g~ 145 (168)
T 3fbu_A 117 LHRIIATCQPENTPSYRVMEKIGMRREGY 145 (168)
T ss_dssp CSEEEEEECTTCHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEEeccCChHHHHHHHHCCCeEEEE
Confidence 9998665 3567899999999999884
|
| >3ec4_A Putative acetyltransferase from the GNAT family; YP_497011.1, joint center for structural genomics; 1.80A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.1e-08 Score=94.24 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=63.4
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+.+++ +.+||++.++... ..+. -+++ .+.|+.+ |||||||++||++++++|+++
T Consensus 133 ~~~v~~~~---g~lVG~~~~~~~~--------~~~~---~~i~----~l~V~p~----~Rg~GiG~~Ll~~~~~~a~~~- 189 (228)
T 3ec4_A 133 QFYGVRID---GRLAAMAGERMRP--------APNL---AEVS----GVCTWPE----YRGRGLAARLIRKVIAGMAAR- 189 (228)
T ss_dssp CEEEEEET---TEEEEEEEECCCS--------STTE---EEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHHT-
T ss_pred cEEEEEEC---CEEEEEEEEEEec--------CCCc---EEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHHc-
Confidence 45676665 8899999987541 0111 1222 2337776 999999999999999999995
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCceEe
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGPYMV 560 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~~m~ 560 (564)
| .++.+. +|..|.+||+|+||+..+.+..
T Consensus 190 g-~~i~l~v~~~N~~a~~~Y~k~GF~~~~~~~~ 221 (228)
T 3ec4_A 190 G-EVPYLHSYASNASAIRLYESLGFRARRAMTA 221 (228)
T ss_dssp T-CEEEEEEETTCHHHHHHHHHTTCEEEEEEEE
T ss_pred C-CeEEEEEeCCCHHHHHHHHHCCCEEEEEEEE
Confidence 8 777654 3567999999999999986443
|
| >2gan_A 182AA long hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.10A {Pyrococcus horikoshii} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=4.3e-08 Score=91.48 Aligned_cols=96 Identities=23% Similarity=0.217 Sum_probs=67.6
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEe-cCCCC---Ccc-ccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRK-CGRNV---TCP-ELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEA 522 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~-~~~~~---~~~-el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~a 522 (564)
....+|+.+++ +.+||++.+.. ..+.. +.. .+. ..-.-+++ .+.|+.+ |||+|||++||+.+
T Consensus 65 ~~~~~~v~~~~---~~~vG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~----~~~v~p~----~rg~Gig~~ll~~~ 131 (190)
T 2gan_A 65 EFDELYTYQKD---NRIIGTIALVYKRIKEKGIWWVPEELM--NEKVGLIE----FFVVDPE----FQGKGIGSTLLEFA 131 (190)
T ss_dssp TCSEEEEEEES---SCEEEEEEEECSCGGGTCCTTCCGGGC--STTEEEEE----EEEECTT----STTSSHHHHHHHHH
T ss_pred CCcEEEEEEEC---CEEEEEEEEEecccccccccccccccC--CCceEEEE----EEEECHH----HcCCCHHHHHHHHH
Confidence 33556777765 78999999986 32110 000 010 11112332 2347777 99999999999999
Q ss_pred HHHHHhcCCCcEEEEe-cCCCcHHH-HhhCCCeeeCc
Q 008466 523 ERIALGEHRSRKMAVI-SGVGTRHY-YRKLGYELEGP 557 (564)
Q Consensus 523 E~~A~~~~g~~~i~~~-s~~~a~~f-Y~klGy~~~g~ 557 (564)
+++|++ .|+.+|.+. .|..+.+| |+|+||+..+.
T Consensus 132 ~~~~~~-~g~~~i~l~~~n~~a~~~~y~k~GF~~~~~ 167 (190)
T 2gan_A 132 VKRLRS-LGKDPYVVTFPNLEAYSYYYMKKGFREIMR 167 (190)
T ss_dssp HHHHHH-TTCEEEEEECGGGSHHHHHHHTTTEEEEEC
T ss_pred HHHHHH-CCCCEEEEecCCccccccEEecCCCEEeec
Confidence 999999 499999885 67789999 99999999874
|
| >1yre_A Hypothetical protein PA3270; APC5563, midwest center for structural genomics, MSC protein structure initiative, PSI, MCSG; HET: COA; 2.15A {Pseudomonas aeruginosa} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=7.5e-08 Score=89.78 Aligned_cols=88 Identities=16% Similarity=0.066 Sum_probs=63.1
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
+...|+.+++ +.+||++.+...... .-.-++.. +.|+++ |||+|||++||+.++++|++
T Consensus 69 ~~~~~~i~~~---~~~iG~~~~~~~~~~----------~~~~~i~~----l~v~~~----~rg~Gig~~ll~~~~~~a~~ 127 (197)
T 1yre_A 69 RALPLAVRLG---VQLVGTTRFAEFLPA----------LPACEIGW----TWLDQA----QHGSGLNRMIKYLMLKHAFD 127 (197)
T ss_dssp SEEEEEEEET---TEEEEEEEEEEEETT----------TTEEEEEE----EEECGG----GTTTTHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEC---CeEEEEEEEEeecCC----------cCeeEEEE----EEECHh----HhcCCHHHHHHHHHHHHHHh
Confidence 3445665543 889999998743211 01122322 126665 99999999999999999998
Q ss_pred cCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
..|+.+|.+. .|..|..||+|+||+.+|.
T Consensus 128 ~~g~~~i~~~v~~~N~~a~~~y~k~GF~~~g~ 159 (197)
T 1yre_A 128 NLRMVRVQLSTAASNLRAQGAIDKLGAQREGV 159 (197)
T ss_dssp TSCCSEEEEEEETTCHHHHHHHHHHTCEEEEE
T ss_pred hcCccEEEEEEcCCCHHHHHHHHHcCCeeeee
Confidence 4599998654 3567899999999999874
|
| >2cy2_A TTHA1209, probable acetyltransferase; structural genomics, unknown function, NPPSFA; HET: ACO; 2.00A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 1wk4_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5e-08 Score=87.58 Aligned_cols=89 Identities=25% Similarity=0.326 Sum_probs=63.9
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+..++ ++.+||++.+....+.. ... -.-+++ .+.|+++ |||+|+|++||+.++++|++ .
T Consensus 59 ~~~v~~~~--~~~~vG~~~~~~~~~~~----~~~---~~~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~-~ 120 (174)
T 2cy2_A 59 RLFVAESE--SGEVVGFAAFGPDRASG----FPG---YTAELW----AIYVLPT----WQRKGLGRALFHEGARLLQA-E 120 (174)
T ss_dssp EEEEEECT--TSCEEEEEEEEECCSCS----CTT---CCEEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHH-T
T ss_pred eEEEEEec--CCEEEEEEEEecCCCCC----CCC---CceEEE----EEEECHH----HhCcCHHHHHHHHHHHHHHh-C
Confidence 45666532 37899999998654110 000 112332 2337776 99999999999999999999 5
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
|+.++.+. .|..+.+||+|+||+..+.
T Consensus 121 g~~~i~l~~~~~n~~a~~~y~k~Gf~~~~~ 150 (174)
T 2cy2_A 121 GYGRMLVWVLKENPKGRGFYEHLGGVLLGE 150 (174)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEEEECCChhHHHHHHHcCCeeece
Confidence 99998665 3567899999999999773
|
| >2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-08 Score=90.76 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=65.5
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
...+|++.++ +.+|||+.+-.. + .- .++..++.. ++ ||++|||+.||++++++|++
T Consensus 34 ~~~~fVAe~~---g~ivG~v~l~~~----i-~g-dg~~~~L~d--l~-------------~R~~GIG~~Ll~~a~~~a~~ 89 (141)
T 2d4p_A 34 TGHSFLAEEG---EEPMGFALAQAV----W-QG-EATTVLVTR--IE-------------GRSVEALRGLLRAVVKSAYD 89 (141)
T ss_dssp HSCCEEEEET---TEEEEEEEEEEE----E-CS-SSEEEEEEE--EE-------------ESSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEC---CEEEEEEeeeeE----E-Ec-CCeEEEEeH--Hh-------------hccccHHHHHHHHHHHHHHH
Confidence 3567999977 899999988632 1 11 222222222 21 79999999999999999999
Q ss_pred cCCCcEEEEe---cCCCcHHHHhhCCCeeeC-ceEee
Q 008466 529 EHRSRKMAVI---SGVGTRHYYRKLGYELEG-PYMVK 561 (564)
Q Consensus 529 ~~g~~~i~~~---s~~~a~~fY~klGy~~~g-~~m~K 561 (564)
+ |+.++.+. +|..|..||+++||.... .|-+.
T Consensus 90 ~-G~~rv~L~~~~~N~~a~~fye~~Gf~~~~~~~~~~ 125 (141)
T 2d4p_A 90 A-GVYEVALHLDPERKELEEALKAEGFALGPLVLAVR 125 (141)
T ss_dssp T-TCSEEEECCCTTCHHHHHHHHHTTCCCCSSCCCCC
T ss_pred C-CCCEEEEEecccCHHHHHHHHHCCCEecCcEEEEE
Confidence 5 99999885 466799999999999877 44433
|
| >3frm_A Uncharacterized conserved protein; APC61048, staphylococcus epidermidis ATCC structural genomics, PSI-2, protein structure initiative; HET: MES; 2.32A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=94.41 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=64.2
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
++..+|+++.+ +.+||++.+.... +.+ +++ .+.|+++ |||||||++||+.++++|+
T Consensus 162 ~~~~~~va~~~---g~~vG~~~~~~~~----------~~~---~i~----~l~V~p~----~Rg~GiG~~Ll~~~~~~a~ 217 (254)
T 3frm_A 162 DDIERLVAYVN---HQPVGIVDIIMTD----------KTI---EID----GFGVLEE----FQHQGIGSEIQAYVGRMAN 217 (254)
T ss_dssp SSCEEEEEEET---TEEEEEEEEEECS----------SCE---EEE----EEEECGG----GTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEEEC---CEEEEEEEEEEcC----------CEE---EEE----EEEECHH----HcCCCHHHHHHHHHHHHhc
Confidence 44567888876 8899999998542 121 222 2336776 9999999999999999997
Q ss_pred hcCCCcEEEEecCCCcHHHHhhCCCeeeCce
Q 008466 528 GEHRSRKMAVISGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 528 ~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~ 558 (564)
.. ++.- ...++..|.+||+|+||+..|.+
T Consensus 218 ~~-~i~l-v~~~n~~a~~~Y~k~GF~~~g~~ 246 (254)
T 3frm_A 218 ER-PVIL-VADGKDTAKDMYLRQGYVYQGFK 246 (254)
T ss_dssp TC-CEEE-EECSSCTTHHHHHHTTCEEEEEE
T ss_pred cC-cEEE-EECCchHHHHHHHHCCCEEeeeE
Confidence 63 5544 44568899999999999999853
|
| >1m4i_A Aminoglycoside 2'-N-acetyltransferase; COA binding motif; HET: COA KAN PAP; 1.50A {Mycobacterium tuberculosis} SCOP: d.108.1.1 PDB: 1m4d_A* 1m4g_A* 1m44_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=9.5e-08 Score=87.97 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=62.4
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+ +++ +.+||++.+.... . ...+ .... +.|-..+.|+++ |||+|||++||++++++|++
T Consensus 48 ~~~~v-~~~---~~~vG~~~~~~~~-~----~~~~--~~~~--~~~i~~l~V~p~----~rg~Gig~~Ll~~~~~~a~~- 109 (181)
T 1m4i_A 48 MHALI-WHH---GAIIAHAAVIQRR-L----IYRG--NALR--CGYVEGVAVRAD----WRGQRLVSALLDAVEQVMRG- 109 (181)
T ss_dssp EEEEE-EET---TEEEEEEEEEEEE-E----EETT--EEEE--EEEEEEEEECGG----GTTSSHHHHHHHHHHHHHHH-
T ss_pred cEEEE-EEC---CEEEEEEEEEEec-c----ccCC--CCcc--eeEEEEEEECHH----HcCCCHHHHHHHHHHHHHHh-
Confidence 45566 544 8899999997432 0 0000 0001 122223347776 99999999999999999987
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
++.-....+|..|.+||+|+||+..|.
T Consensus 110 -~~~l~~~~~n~~a~~~y~k~GF~~~~~ 136 (181)
T 1m4i_A 110 -AYQLGALSSSARARRLYASRGWLPWHG 136 (181)
T ss_dssp -HCSEEEEECCTTTHHHHHHTTCEECCS
T ss_pred -CcEEEEecCCHHHHHHHHhcCCEEcCC
Confidence 465556778999999999999999874
|
| >3bln_A Acetyltransferase GNAT family; NP_981174.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE MRD GOL; 1.31A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.6e-08 Score=86.05 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=59.7
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+.+++ +.+||++.+.... .+. ..++ .+.|+++ |||+|||++||+.++++|+++
T Consensus 41 ~~~v~~~~---~~~vG~~~~~~~~---------~~~---~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~~- 96 (143)
T 3bln_A 41 RCVIVKED---NSISGFLTYDTNF---------FDC---TFLS----LIIVSPT----KRRRGYASSLLSYMLSHSPTQ- 96 (143)
T ss_dssp CEEEEEET---TEEEEEEEEEEEE---------TTE---EEEE----EEEECTT----CCSSCHHHHHHHHHHHHCSSS-
T ss_pred eEEEEEeC---CeEEEEEEEEecC---------CCc---eEEE----EEEECHH----HcCCChHHHHHHHHHHHHhhC-
Confidence 34666655 7899999998541 011 1111 2337776 999999999999999999984
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
|+.-....+|..+.+||+|+||+..+.
T Consensus 97 ~i~~~~~~~n~~a~~~y~k~Gf~~~~~ 123 (143)
T 3bln_A 97 KIFSSTNESNESMQKVFNANGFIRSGI 123 (143)
T ss_dssp EEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEcccCHHHHHHHHHCCCeEeeE
Confidence 743333345778999999999998773
|
| >3f5b_A Aminoglycoside N(6')acetyltransferase; APC60744, legionella pneumophila subsp. pneumophila, structural genomics, PSI-2; HET: MSE; 2.00A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-08 Score=89.59 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=64.4
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.+...|+.+++ +.+||++.+...... .+.. .-..+++. +.|+++ |||+|||++||+.++++|
T Consensus 62 ~~~~~~v~~~~---~~~vG~~~~~~~~~~---~~~~---~~~~~i~~----~~v~p~----~rg~Gig~~ll~~~~~~~- 123 (182)
T 3f5b_A 62 PWATHWIAYDN---EIPFAYLITSEIEKS---EEYP---DGAVTLDL----FICRLD----YIGKGLSVQMIHEFILSQ- 123 (182)
T ss_dssp CSSEEEEEEET---TEEEEEEEEEEECSC---SSCT---TCEEEEEE----EECSGG----GCCHHHHHHHHHHHHHHH-
T ss_pred CCeEEEEEEeC---CCcEEEEEEeccccc---cccC---CCceEEEE----EEEChh----hcCCchHHHHHHHHHHHh-
Confidence 34566777765 889999998754311 0111 11223331 124554 999999999999999999
Q ss_pred hcCCCcEEEEec---CCCcHHHHhhCCCeeeCce
Q 008466 528 GEHRSRKMAVIS---GVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 528 ~~~g~~~i~~~s---~~~a~~fY~klGy~~~g~~ 558 (564)
.. |+.+|.+.. |..|.+||+|+||+.+|.+
T Consensus 124 ~~-~~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 156 (182)
T 3f5b_A 124 FS-DTKIVLINPEISNERAVHVYKKAGFEIIGEF 156 (182)
T ss_dssp CT-TCSEEEECCBTTCHHHHHHHHHHTCEEEEEE
T ss_pred hC-CCCEEEEecCcCCHHHHHHHHHCCCEEEeEE
Confidence 43 899997753 5578999999999998853
|
| >2ree_A CURA; GNAT, S-acetyltransferase, decarboxylase, polyketid synthase, loading, phosphopantetheine, transferase, lyase; HET: SO4; 1.95A {Lyngbya majuscula} PDB: 2ref_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.8e-08 Score=92.25 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=62.8
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCcc----ceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKC----SIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~----~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.|+++++ +.+|||+.+.........+++..+. .....-++|...+.|+++ |||+|||++||++++++|+
T Consensus 56 ~~va~~~---g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~V~p~----~rg~GiG~~Ll~~~~~~a~ 128 (224)
T 2ree_A 56 QFILELE---DKIVGAIYSQRIDNPQLLDNKTCTQVPLLHTESGVVVQLLAVNILPE----LQNQGLGDRLLEFMLQYCA 128 (224)
T ss_dssp CEEEEES---SCEEEEEEEEEESCGGGGTTCCTTTGGGGCCTTCSEEEEEEEEECGG----GCSSSHHHHHHHHHHHHHT
T ss_pred eEEEEEC---CEEEEEEEEeccCchhhchhhcccchhhccCCCCCeEEEEEEEECHH----HcCCCHHHHHHHHHHHHHH
Confidence 3555554 7889999886432111111100000 000011234444558887 9999999999999999999
Q ss_pred hcC-CCcEEE--Ee---------------------c---CCCcHHHHhhCCCeeeC
Q 008466 528 GEH-RSRKMA--VI---------------------S---GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 528 ~~~-g~~~i~--~~---------------------s---~~~a~~fY~klGy~~~g 556 (564)
+ . |++.|. +. + |..|..||+|+||+..|
T Consensus 129 ~-~~g~~~i~~~l~~~~~~~~~~~~~~~y~~~~~~~g~~N~~a~~fY~k~GF~~~g 183 (224)
T 2ree_A 129 Q-ISGVEKVVAVTLCRNYPDYSPMPMAEYIHQKNESGLLVDPLLRFHQIHGAKIEK 183 (224)
T ss_dssp T-STTCCEEEEEECCSSGGGTTTSCHHHHTTCBCTTSCBSSHHHHHHHHTTCEEEE
T ss_pred H-hcCccEEEEeccCCccccCCCCCHHHHHHHHhcCCcccCcceeeeecCCeEEEE
Confidence 8 5 999986 32 1 45689999999999877
|
| >3d3s_A L-2,4-diaminobutyric acid acetyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: MSE; 1.87A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-08 Score=92.50 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=61.7
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.|+.+. +++.+||++.+...... . +..++. .+.|+.+ |||+|||++||+.++++|++ .|
T Consensus 69 ~~v~~~--~~g~ivG~~~~~~~~~~-------~-----~~~~i~--~l~V~p~----~rg~Gig~~Ll~~~~~~a~~-~g 127 (189)
T 3d3s_A 69 CVVAES--PGGRIDGFVSAYLLPTR-------P-----DVLFVW--QVAVHSR----ARGHRLGRAMLGHILERQEC-RH 127 (189)
T ss_dssp CEEEEC--TTSCEEEEEEEEECSSC-------T-----TEEEEE--EEEECGG----GTTSCHHHHHHHHHHHSGGG-TT
T ss_pred EEEEEC--CCCEEEEEEEEEEcCCC-------C-----CceEEE--EEEECHH----HcCCCHHHHHHHHHHHHHHH-CC
Confidence 456655 13789999999865311 0 111221 2347776 99999999999999999999 59
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+..|.+. .|..|.+||+|+||+..+.
T Consensus 128 ~~~i~l~v~~~N~~a~~~y~k~Gf~~~~~ 156 (189)
T 3d3s_A 128 VRHLETTVGPDNQASRRTFAGLAGERGAH 156 (189)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHTTTCE
T ss_pred CCEEEEEEecCcHHHHHHHHHcCCccccc
Confidence 9998655 3447899999999987664
|
| >1y9k_A IAA acetyltransferase; structural genomics, midwest center for structural genomics bacillus cereus ATCC 14579, PSI; 2.39A {Bacillus cereus atcc 14579} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-07 Score=83.44 Aligned_cols=82 Identities=24% Similarity=0.350 Sum_probs=61.0
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+.+++ +.+||++.+.... .+. -+++ .+.|+++ |||+|+|++|++.++++|++ .
T Consensus 38 ~~~v~~~~---~~~vG~~~~~~~~---------~~~---~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~-~ 93 (157)
T 1y9k_A 38 LTYVAKQG---GSVIGVYVLLETR---------PKT---MEIM----NIAVAEH----LQGKGIGKKLLRHAVETAKG-Y 93 (157)
T ss_dssp EEEEEECS---SSEEEEEEEEECS---------TTE---EEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHH-T
T ss_pred cEEEEEEC---CEEEEEEEEEcCC---------CCE---EEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-C
Confidence 45666654 7899999997432 111 1221 2336766 99999999999999999998 5
Q ss_pred CCcEEEEec---CCCcHHHHhhCCCeeeC
Q 008466 531 RSRKMAVIS---GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~~s---~~~a~~fY~klGy~~~g 556 (564)
|+..+.+.+ +..+..||+|+||+..+
T Consensus 94 g~~~i~~~~~~~n~~a~~~y~k~Gf~~~~ 122 (157)
T 1y9k_A 94 GMSKLEVGTGNSSVSQLALYQKCGFRIFS 122 (157)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHHCCCEEec
Confidence 999987664 33489999999999876
|
| >2z10_A Ribosomal-protein-alanine acetyltransferase; alpha/beta protein, acyltransferase, structural genomics, NPPSFA; HET: IYR; 1.77A {Thermus thermophilus} PDB: 2z0z_A* 2z11_A* 2zxv_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=87.92 Aligned_cols=88 Identities=13% Similarity=0.019 Sum_probs=61.6
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
++...|+...+ +.+||++.+...... .-.-++..+ +.++ |||+|||++||+.++++|+
T Consensus 61 ~~~~~~~i~~~---g~~vG~~~~~~~~~~----------~~~~~i~~~-----~~p~----~rg~Gig~~ll~~~~~~a~ 118 (194)
T 2z10_A 61 PGRVNWAILFG---KEVAGRISVIAPEPE----------HAKLELGTM-----LFKP----FWGSPANKEAKYLLLRHAF 118 (194)
T ss_dssp TTCEEEEEEET---TEEEEEEEEEEEEGG----------GTEEEEEEE-----ECGG----GTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEecC---CCEEEEEEecccCcc----------cCEEEEeeE-----ECHh----HhCCcHHHHHHHHHHHHHH
Confidence 33445555443 789999998743211 011222211 2244 9999999999999999999
Q ss_pred hcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
++.|+.+|.+. .|..|.+||+|+||+.+|.
T Consensus 119 ~~~g~~~i~~~v~~~N~~a~~~y~k~GF~~~g~ 151 (194)
T 2z10_A 119 EVLRAERVQFKVDLRNERSQRALEALGAVREGV 151 (194)
T ss_dssp HTSCCSEEEEEEETTCHHHHHHHHHHTCEEEEE
T ss_pred hhCCceEEEEEecCCCHHHHHHHHHcCCcEEEe
Confidence 84599998654 4667899999999999874
|
| >3fnc_A Protein LIN0611, putative acetyltransferase; GNAT, RIMI, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.75A {Listeria innocua} SCOP: d.108.1.0 | Back alignment and structure |
|---|
Probab=98.59 E-value=5.9e-08 Score=86.66 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=59.8
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+++ +.+||++.+.... .+. -+++ .+.|+++ |||+|||++||+.++++|+
T Consensus 60 ~~~~v~~~~---~~~vG~~~~~~~~---------~~~---~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~-- 114 (163)
T 3fnc_A 60 TPFAVLEQA---DKVIGFANFIELE---------KGK---SELA----AFYLLPE----VTQRGLGTELLEVGMTLFH-- 114 (163)
T ss_dssp SCEEEEEET---TEEEEEEEEEEEE---------TTE---EEEE----EEEECGG----GCSSSHHHHHHHHHHHHTT--
T ss_pred CEEEEEEEC---CEEEEEEEEEeCC---------CCc---EEEE----EEEECHH----HhCCCHHHHHHHHHHHHhc--
Confidence 345676665 8899999998541 011 2222 2337776 9999999999999999997
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
|+.++.+. +|..|.+||+|+||+..+.
T Consensus 115 -~~~~i~l~v~~~n~~a~~~y~k~Gf~~~~~ 144 (163)
T 3fnc_A 115 -VPLPMFVNVEKGNETAIHFYKAKGFVQVEE 144 (163)
T ss_dssp -CCSSEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred -cCCEEEEEEeCCCHHHHHHHHHcCCEEEEE
Confidence 46665443 3567899999999999885
|
| >2wpx_A ORF14; transferase, acetyl transferase, antibiotic biosynthesis; HET: ACO; 2.31A {Streptomyces clavuligerus} PDB: 2wpw_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-07 Score=94.76 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=65.6
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh--c
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG--E 529 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~--~ 529 (564)
+|+.+. ..++.+|||+.+...... . . +.+...+.|+.. |||+|||+.||.++.+++++ .
T Consensus 237 ~~~~~~-~~~g~~vG~~~~~~~~~~-------~-----~--~~~i~~~~V~p~----~rg~G~g~~L~~~~~~~~~~~~~ 297 (339)
T 2wpx_A 237 HTGAVH-DATGALAGYTSVSKTTGN-------P-----A--YALQGMTVVHRE----HRGHALGTLLKLANLEYVLRHEP 297 (339)
T ss_dssp EEEEEE-TTTTEEEEEEEEEECSSC-------T-----T--EEEEEEEEECGG----GTTSCHHHHHHHHHHHHHHHHCT
T ss_pred EEEEEe-CCCCcEEEEEEEEccCCC-------C-----c--eEEEeeEEECHH----hcCccHHHHHHHHHHHHHHHhCC
Confidence 344443 234789999999864310 0 1 112222446776 99999999999999999998 6
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc--eEeeec
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP--YMVKYL 563 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~--~m~K~l 563 (564)
|+.++.+. +|..|..||+|+||+.+|. ++.|.|
T Consensus 298 -g~~~~~l~v~~~N~~a~~ly~~~Gf~~~~~~~~y~~~l 335 (339)
T 2wpx_A 298 -EVRLVETANAEDNHPMIAVNAALGFEPYDRWVFWTAEA 335 (339)
T ss_dssp -TCCEEEEEEETTCHHHHHHHHHTTCEEEEEEEEEEEEC
T ss_pred -CceEEEEecccccHHHHHHHHHcCCEEeccEEEEEEec
Confidence 99887543 4667899999999999884 566655
|
| >3iwg_A Acetyltransferase, GNAT family; structural genomics, APC, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.30A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-07 Score=94.60 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=63.7
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+.+++ +.+||++.++.-... .... -++. +.|+++ |||+|||++||+.++++|++ +
T Consensus 181 ~~~va~~~---g~iVG~~~~~~~~~~------~~~~---~~~~-----l~V~p~----~RGkGiG~~Ll~~l~~~a~~-~ 238 (276)
T 3iwg_A 181 ELFGYWHK---GKLLAAGECRLFDQY------QTEY---ADLG-----MIVAQS----NRGQGIAKKVLTFLTKHAAT-Q 238 (276)
T ss_dssp CEEEEEET---TEEEEEEEEEECSSS------CTTE---EEEE-----EEECGG----GTTSSHHHHHHHHHHHHHHH-T
T ss_pred eEEEEEEC---CEEEEEEEEEecccc------CCcc---eEEE-----EEECHH----HcCCCHHHHHHHHHHHHHHH-c
Confidence 35777665 889999998852100 0001 1121 447877 99999999999999999999 5
Q ss_pred CCcEEE--EecCCCcHHHHhhCCCeeeCceE
Q 008466 531 RSRKMA--VISGVGTRHYYRKLGYELEGPYM 559 (564)
Q Consensus 531 g~~~i~--~~s~~~a~~fY~klGy~~~g~~m 559 (564)
|+..+. ...|..|.+||+|+||+..+...
T Consensus 239 g~~~i~~v~~~N~~A~~~YeklGF~~~~~l~ 269 (276)
T 3iwg_A 239 GLTSICSTESNNVAAQKAIAHAGFTSAHRIV 269 (276)
T ss_dssp TCEEEEEEETTCHHHHHHHHHTTEEEEEEEE
T ss_pred CCCEEEEEccCCHHHHHHHHHCCCEEeeEEE
Confidence 999886 22466799999999999988543
|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-07 Score=94.84 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=63.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
...|++.++ +.+||++.+....... -.-|+.+| |+++ |||+|||++||+.++++|++
T Consensus 207 ~~~~va~~~---~~~vG~~~~~~~~~~~----------~~~e~~~~-----v~~~----~rg~Gig~~ll~~~~~~a~~- 263 (333)
T 4ava_A 207 HFVWVVTDG---SDPVADARFVRDETDP----------TVAEIAFT-----VADA----YQGRGIGSFLIGALSVAARV- 263 (333)
T ss_dssp EEEEEEEET---TEEEEEEEEEECSSCT----------TEEEEEEE-----ECGG----GTTSSHHHHHHHHHHHHHHH-
T ss_pred cEEEEEEeC---CCeEEEEEEEecCCCC----------CeEEEEEE-----ECHH----hcCCCHHHHHHHHHHHHHHH-
Confidence 345666665 6779999998653111 11233333 7776 99999999999999999999
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeC
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g 556 (564)
.|+++|.+. .|..|++||+|+||+.++
T Consensus 264 ~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~ 293 (333)
T 4ava_A 264 DGVERFAARMLSDNVPMRTIMDRYGAVWQR 293 (333)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHTTTCCCEE
T ss_pred CCCcEEEEEECCCCHHHHHHHHHcCCceec
Confidence 599998643 466889999999999765
|
| >1r57_A Conserved hypothetical protein; GCN5, N-acetyltransferase, structural genomics, PSI, protein structure initiative; NMR {Staphylococcus aureus} SCOP: d.108.1.1 PDB: 2h5m_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=8.5e-08 Score=81.29 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=55.6
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~ 540 (564)
++.+||++.+.... ++ ...-.++| |.++ |||+|+|++||+.++++|++. |+..+.+.
T Consensus 19 ~~~ivG~~~~~~~~---------~~--~~~i~~~~-----V~p~----~rg~GiG~~Ll~~~~~~a~~~-g~~~i~l~-- 75 (102)
T 1r57_A 19 ENNALAEITYRFVD---------NN--EINIDHTG-----VSDE----LGGQGVGKKLLKAVVEHAREN-NLKIIASC-- 75 (102)
T ss_dssp STTEEEEEEEEESS---------SS--EEEEEEEE-----ECCS----SSTTCTHHHHHHHHHHHHHHH-TCEEEESS--
T ss_pred CCeEEEEEEEEeCC---------CC--EEEEEEEE-----ECHH----HCCCCHHHHHHHHHHHHHHHc-CCCEEEcC--
Confidence 37889999997542 01 11112233 7877 999999999999999999995 99887554
Q ss_pred CCcHHHHhhCC-CeeeCc
Q 008466 541 VGTRHYYRKLG-YELEGP 557 (564)
Q Consensus 541 ~~a~~fY~klG-y~~~g~ 557 (564)
+.+.+||+|+| |...+.
T Consensus 76 ~~~~nfy~k~~~~~~~~~ 93 (102)
T 1r57_A 76 SFAKHMLEKEDSYQDVYL 93 (102)
T ss_dssp HHHHHHHHHCGGGTTTBC
T ss_pred HHHHHHHHhChHHHHHhh
Confidence 67899999999 976553
|
| >3ey5_A Acetyltransferase-like, GNAT family; structural genomics, APC60148, GNAT famil protein structure initiative; 2.15A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.6e-08 Score=90.64 Aligned_cols=85 Identities=13% Similarity=0.242 Sum_probs=59.3
Q ss_pred CCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHH
Q 008466 447 NEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIA 526 (564)
Q Consensus 447 ~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A 526 (564)
.+...+|+.+.+ +.+|||+.+.... +.+ ++ ..+.|+++ |||+|||++||+.++++|
T Consensus 47 ~~~~~~~v~~~~---~~ivG~~~~~~~~----------~~~---~i----~~l~V~p~----~rg~GiG~~Ll~~~~~~a 102 (181)
T 3ey5_A 47 IGNFHNNIIFDD---DLPIGFITYWDFD----------EFY---YV----EHFATNPA----LRNGGYGKRTLEHLCEFL 102 (181)
T ss_dssp CTTEEEEEEEET---TEEEEEEEEEECS----------SCE---EE----EEEEECGG----GTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEEEEC---CEEEEEEEEEEcC----------CeE---EE----EEEEEchh----hcCCCHHHHHHHHHHHhh
Confidence 344567777776 8899999997442 111 11 12347776 999999999999999999
Q ss_pred HhcCCCcEEEEe---cCCCcHHHHhhCCCeeeC
Q 008466 527 LGEHRSRKMAVI---SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 527 ~~~~g~~~i~~~---s~~~a~~fY~klGy~~~g 556 (564)
+.. +...+... .+..|.+||+|+||+..|
T Consensus 103 ~~~-~~l~v~~~~~~~n~~a~~fY~k~GF~~~~ 134 (181)
T 3ey5_A 103 KRP-IVLEVERPVEEMAKRRINFYQRHGFTLWE 134 (181)
T ss_dssp CSC-EEEEECCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred hhC-eEEEEeCCCccchHHHHHHHHHCCCEECC
Confidence 842 33222221 234579999999999987
|
| >2fsr_A Acetyltransferase; alpha-beta-sandwich, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: PEG; 1.52A {Agrobacterium tumefaciens str} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-07 Score=87.92 Aligned_cols=78 Identities=10% Similarity=0.062 Sum_probs=58.7
Q ss_pred CCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe-
Q 008466 460 RQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI- 538 (564)
Q Consensus 460 ~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~- 538 (564)
+++.+||++.+.... ... . -++.. .|.++ |||+|||++||+.++++|++..|+++|.+.
T Consensus 94 ~~g~~iG~~~~~~~~-~~~-------~---~~i~~-----~v~p~----~rg~Gig~~ll~~~~~~a~~~~g~~~i~l~v 153 (195)
T 2fsr_A 94 ETGECIGQIGINHGP-LFP-------E---KELGW-----LLYEG----HEGRGYAAEAAVALRDWAFETLNLPTLVSYV 153 (195)
T ss_dssp TTTEEEEEEEEECST-TCS-------S---CEEEE-----EECTT----CTTSSHHHHHHHHHHHHHHHHSCCSCEEEEE
T ss_pred CCCCEEEEEeeEecC-CCC-------e---EEEEE-----EEChh----HcCCChHHHHHHHHHHHHHhhCCccEEEEEE
Confidence 357899999997431 111 1 12222 25666 999999999999999999984599998665
Q ss_pred --cCCCcHHHHhhCCCeeeCc
Q 008466 539 --SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 --s~~~a~~fY~klGy~~~g~ 557 (564)
.|..|..||+|+||+.+|.
T Consensus 154 ~~~N~~a~~~y~k~GF~~~g~ 174 (195)
T 2fsr_A 154 SPQNRKSAAVAERIGGTLDPL 174 (195)
T ss_dssp CTTCHHHHHHHHHTTCEECTT
T ss_pred CCCCHHHHHHHHHCCCEEEee
Confidence 3567899999999999885
|
| >2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase, succinyltransferase; HET: FLC; 2.00A {Mycobacterium tuberculosis} PDB: 2vzz_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-07 Score=89.28 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=58.8
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||++.+...... ..-.-++..+ |+.+ |||||||+.||+.++++|+++.|+++|.+.
T Consensus 87 ~~~~iG~~~~~~~~~~---------~~~~~eig~~-----v~~~----~rgkGig~~ll~~l~~~a~~~~g~~~i~~~v~ 148 (218)
T 2vzy_A 87 DGRAVGVQALSSKDFP---------ITRQVDSGSW-----LGLR----YQGHGYGTEMRAAVLYFAFAELEAQVATSRSF 148 (218)
T ss_dssp TTEEEEEEEEEEESHH---------HHCEEEEEEE-----ECGG----GTTSSHHHHHHHHHHHHHHHTSCCSEEEEEEE
T ss_pred CCEEEEEEEEeccccC---------CCCeEEEEEE-----ECHH----HcCCCHHHHHHHHHHHHHHhhCCceEEEEEec
Confidence 3789999999744200 0111233322 6665 999999999999999999984599998654
Q ss_pred -cCCCcHHHHhhCCCeeeCc
Q 008466 539 -SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g~ 557 (564)
.|..|++||+|+||+.+|.
T Consensus 149 ~~N~~a~~~y~k~GF~~~g~ 168 (218)
T 2vzy_A 149 VDNPASIAVSRRNGYRDNGL 168 (218)
T ss_dssp TTCHHHHHHHHHTTCEEEEE
T ss_pred cCCHHHHHHHHHCCCEEeee
Confidence 4667899999999999874
|
| >2qml_A BH2621 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.55A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.6e-07 Score=86.33 Aligned_cols=94 Identities=9% Similarity=0.047 Sum_probs=62.1
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccC-CCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHG-READKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~-~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..|+..++ +.+||++.+.........+......+ + .|-.+.|.. + |||+|||++||+.++++|.++
T Consensus 71 ~~~v~~~~---~~~vG~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~v~~p~----~rg~Gig~~ll~~~~~~a~~~ 137 (198)
T 2qml_A 71 TLMVGAIN---GVPMSYWESYWVKEDIIANYYPFEEH---D---QGIHLLIGPQE----YLGQGLIYPLLLAIMQQKFQE 137 (198)
T ss_dssp EEEEEEET---TEEEEEEEEEEGGGSGGGGGSCCCTT---C---EEEEEEECSGG----GSSSSTHHHHHHHHHHHHHTS
T ss_pred eEEEEEEC---CEEEEEEEEEecccccccccccCCCc---c---EEEEEEEeCHH----HcCCCHHHHHHHHHHHHHHhC
Confidence 44555544 78999999975431100000000010 1 111122553 4 999999999999999999874
Q ss_pred CCCcEEEEec---CCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVIS---GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s---~~~a~~fY~klGy~~~g~ 557 (564)
.|+.+|.+.. |..|.+||+|+||+.+|.
T Consensus 138 ~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 168 (198)
T 2qml_A 138 PDTNTIVAEPDRRNKKMIHVFKKCGFQPVKE 168 (198)
T ss_dssp TTCCEEEECCBTTCHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHCCCEEEEE
Confidence 5999997764 556899999999999874
|
| >3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-07 Score=90.04 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=63.6
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
++...|+.+. .+++.+||++.+..... ..-.-|+.. +-|+.+ |||+|||++||+.+.++|+
T Consensus 89 ~~~~~~~i~~-~~~~~~iG~~~l~~~~~----------~~~~~ei~~----~~v~~~----~~g~Gig~~ll~~l~~~a~ 149 (209)
T 3pzj_A 89 SDTALYVVCA-KDSDQALGFLGYRQMVQ----------AHGAIEIGH----VNFSPA----LRRTRLATEAVFLLLKTAF 149 (209)
T ss_dssp TTCEEEEEEE-TTCCCCCEEEEEEEEEG----------GGTEEEEEE----EEECTT----TTTSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEE-CCCCcEEEEEEeeeecC----------cCCeEEEEE----EEECHH----HhcCCHHHHHHHHHHHHHH
Confidence 3344555554 23478899999963220 111123321 116666 9999999999999999999
Q ss_pred hcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+ .|+++|.+. .|..|++||+|+||+.+|.
T Consensus 150 ~-~g~~~i~l~v~~~N~~a~~~y~k~GF~~~g~ 181 (209)
T 3pzj_A 150 E-LGYRRCEWRCDSRNAASAAAARRFGFQFEGT 181 (209)
T ss_dssp H-TTCSEEEEEEETTCHHHHHHHHHHTCEEEEE
T ss_pred H-cCCcEEEEeecCCCHHHHHHHHHCCCEEeee
Confidence 8 699998654 4667899999999999884
|
| >4fd5_A Arylalkylamine N-acetyltransferase 2; GNAT; 1.64A {Aedes aegypti} PDB: 4fd6_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-07 Score=88.89 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=47.0
Q ss_pred cccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe-cCCCcHHHHhhCCCeeeCc
Q 008466 498 AVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 498 ~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-s~~~a~~fY~klGy~~~g~ 557 (564)
.+.|+.+ |||+|||++||++++++|++ .|+..+.+. ++..+..||+|+||+..+.
T Consensus 135 ~~~v~~~----~rg~Gig~~l~~~~~~~~~~-~g~~~~~~~~~~~~~~~~y~~~Gf~~~~~ 190 (222)
T 4fd5_A 135 ILSVDSR----FRGKGLAKKLIEKSEELALD-RGFQVMKTDATGAFSQRVVSSLGFITKCE 190 (222)
T ss_dssp EEEECGG----GTTSSHHHHHHHHHHHHHHH-TTCCEEEEEECSHHHHHHHHHTTCEEEEE
T ss_pred EEEECHH----HcCCCHHHHHHHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHCCCEEEEE
Confidence 4457776 99999999999999999999 599988655 4667899999999998774
|
| >3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-06 Score=90.43 Aligned_cols=157 Identities=11% Similarity=0.089 Sum_probs=106.2
Q ss_pred cEEEE-EE-cCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCC
Q 008466 181 KVEFI-LM-GGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCT 258 (564)
Q Consensus 181 kve~I-~~-GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~ 258 (564)
++..| |+ ||.|+. ..+.+.++++.+.+...-.+ ....++++|+-- + +.++.|.+.+..
T Consensus 169 ~i~~Ivf~GgGEPLl-n~d~v~~~i~~lk~~~Gl~~----------------s~r~itlsTnG~-~--p~i~~L~~~~d~ 228 (404)
T 3rfa_A 169 PITNVVMMGMGEPLL-NLNNVVPAMEIMLDDFGFGL----------------SKRRVTLSTSGV-V--PALDKLGDMIDV 228 (404)
T ss_dssp SCSEEEECSSSCGGG-CHHHHHHHHHHHHSTTTTCC----------------CGGGEEEEESCC-H--HHHHHHHHHCCC
T ss_pred CccEEEEeCCCCccc-CHHHHHHHHHHHHhhcCcCc----------------CCCceEEECCCc-H--HHHHHHHHhhcc
Confidence 36655 76 688865 55666777777764211001 112478888653 2 457788887777
Q ss_pred eEEEccCCCCHHHHHhcC---CCCCHHHHHHHHH-HHHHcCC---cEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCC
Q 008466 259 RLEIGVQSTYEDVARDTN---RGHTVAAVADCFC-LAKDAGF---KVV--AHMMPDLPNVGVERDLESFREFFESPLFRA 329 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~---Rght~~~~~~ai~-~lr~~G~---~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~p 329 (564)
.+.+.+.+.+++..+.+. ++.+.+++.++++ .+++.|. .+. .-+|.|+ +++.+++.+.++.+. .++
T Consensus 229 ~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~~g~~~~~V~ie~vLI~Gv-NDs~e~~~~La~ll~---~l~- 303 (404)
T 3rfa_A 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHV-NDGTEHAHQLAELLK---DTP- 303 (404)
T ss_dssp EEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHHCTTTTTCEEEEEEEBTTT-TCSHHHHHHHHHHTT---TSC-
T ss_pred eEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCCcccEEEEEEEecCC-CCCHHHHHHHHHHHH---cCC-
Confidence 899999999999988765 6889999999994 5567777 655 4567777 788888777776664 333
Q ss_pred CeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 330 DGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 330 d~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
..|.+.|+.+.+++. |++++.+++.+....+..
T Consensus 304 ~~VnLIpynP~~~~~---------~~~ps~e~i~~f~~iL~~ 336 (404)
T 3rfa_A 304 CKINLIPWNPFPGAP---------YGRSSNSRIDRFSKVLMS 336 (404)
T ss_dssp EEEEEEECCCCTTCC---------CCBCCHHHHHHHHHHHHH
T ss_pred CcEEEEeccCCCCCC---------CCCCCHHHHHHHHHHHHH
Confidence 467777888776653 566777766555444333
|
| >2qec_A Histone acetyltransferase HPA2 and related acetyltransferases; NP_600742.1, acetyltransferase (GNAT) family; 1.90A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.1e-07 Score=84.76 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=44.8
Q ss_pred eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEec-CCCcHHHHhhCCCeeeC
Q 008466 494 VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS-GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 494 vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s-~~~a~~fY~klGy~~~g 556 (564)
.|-..+.|+.+ |||+|||++||+.++++|++ . .+.+.+ |..+.+||+|+||+..+
T Consensus 126 ~~l~~l~V~p~----~rg~Gig~~Ll~~~~~~a~~-~---~~~v~~~n~~a~~~y~k~GF~~~~ 181 (204)
T 2qec_A 126 WYLYTVATSSS----ARGTGVGSALLNHGIARAGD-E---AIYLEATSTRAAQLYNRLGFVPLG 181 (204)
T ss_dssp EEEEEEEECGG----GTTSSHHHHHHHHHHHHHTT-S---CEEEEESSHHHHHHHHHTTCEEEE
T ss_pred EEEEEEEEChh----hcCCCHHHHHHHHHHHHhhh-C---CeEEEecCccchHHHHhcCCeEeE
Confidence 44444557776 99999999999999999998 3 555554 56899999999999876
|
| >1yk3_A Hypothetical protein RV1347C/MT1389; acyltransferase, GCN5-related fold, structural genomics, PSI, protein structure initiative; HET: BOG; 2.20A {Mycobacterium tuberculosis} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-07 Score=89.14 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=62.8
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh-
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG- 528 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~- 528 (564)
...|+...+ +.+||++.+....... .............+|++ |.. .+|||||||++||+.++++|.+
T Consensus 91 ~~~~v~~~~---g~~iG~~~l~~~~~~~-~~~~~~~~~~~~g~~~~-----i~~---p~~rGkGiG~~ll~~~~~~a~~~ 158 (210)
T 1yk3_A 91 SLPLIGSWH---GTDGGYLELYWAAKDL-ISHYYDADPYDLGLHAA-----IAD---LSKVNRGFGPLLLPRIVASVFAN 158 (210)
T ss_dssp EEEEEEEET---TEEEEEEEEEEGGGBG-GGGSSCCCTTCEEEEEE-----ESC---HHHHTTTHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEC---CEEEEEEEEEcccccc-cccccCCCCCceEEEEE-----EEC---hhhcCCChHHHHHHHHHHHHHhc
Confidence 345665554 7899999987432110 00000000001123333 441 3499999999999999999986
Q ss_pred cCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+.|+.+|.+. .|..|++||+|+||+.+|.
T Consensus 159 ~~g~~~I~l~v~~~N~~A~~lyek~GF~~~g~ 190 (210)
T 1yk3_A 159 EPRCRRIMFDPDHRNTATRRLCEWAGCKFLGE 190 (210)
T ss_dssp CTTCCEEEECCBTTCHHHHHHHHHHTCEEEEE
T ss_pred CCCCCEEEEecCccCHHHHHHHHHcCCEEeEE
Confidence 4699999765 4667899999999999884
|
| >4fd7_A Putative arylalkylamine N-acetyltransferase 7; GNAT, COA binding; 1.80A {Aedes aegypti} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.3e-07 Score=90.81 Aligned_cols=55 Identities=11% Similarity=0.202 Sum_probs=47.2
Q ss_pred ccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEE-ecCCCcHHHHhhCCCeeeC
Q 008466 497 TAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAV-ISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 497 ~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~-~s~~~a~~fY~klGy~~~g 556 (564)
..+.|+.+ |||+|||++||++++++|++. |+..+.+ .+|..+.+||+|+||+..+
T Consensus 151 ~~~~V~p~----~rg~Gig~~L~~~~~~~~~~~-g~~~~~~~~~n~~a~~~y~k~GF~~~~ 206 (238)
T 4fd7_A 151 MGLSVDPK----YRGRGIATEILRARIPLCRAV-GLKLSATCFTGPNSQTAATRVGFQEDF 206 (238)
T ss_dssp EEEEECGG----GTTSSHHHHHHHTHHHHHHHH-TCCEEEEEECSHHHHHHHHHHTCEEEE
T ss_pred EEEEECHH----HcCCCHHHHHHHHHHHHHHHc-CCcEEEEEcCCHHHHHHHHHCCCEEEE
Confidence 34557776 999999999999999999995 9998755 4677899999999999875
|
| >3ddd_A Putative acetyltransferase; NP_142035.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: COA; 2.25A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.4e-07 Score=91.98 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=64.5
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+.+++ +.+||++.+.... +. -++. .+.|+.+ |||||||++||++++++++ .
T Consensus 64 ~~~v~~~~---g~~vG~~~~~~~~----------~~---~~i~----~~~V~p~----~rg~Gig~~Ll~~~~~~~~-~- 117 (288)
T 3ddd_A 64 GCLLAFLK---DEPVGMGCIFFYN----------KQ---AWIG----LMGVKKA----YQRRGIGTEVFRRLLEIGR-R- 117 (288)
T ss_dssp CEEEEEET---TEEEEEEEEEECS----------SE---EEEE----EEEECGG----GCSSSHHHHHHHHHHHHHH-H-
T ss_pred EEEEEEEC---CEEEEEEEEEEEC----------CE---EEEE----EEEECHH----HcCCCHHHHHHHHHHHHHH-c-
Confidence 35777765 8899999887431 11 1222 2337776 9999999999999999999 5
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
|...+.+..+..+.+||+|+||+..+.
T Consensus 118 ~~~~~~l~~n~~a~~~y~k~Gf~~~~~ 144 (288)
T 3ddd_A 118 KVDTIRLDASSQGYGLYKKFKFVDEYR 144 (288)
T ss_dssp HCSEEEEEECTTTHHHHHHTTCEEEEE
T ss_pred CCcEEEEEeCHHHHHHHHHCCCEEece
Confidence 899999999999999999999999875
|
| >2pc1_A Acetyltransferase, GNAT family; NP_688560.1, structural genom joint center for structural genomics, JCSG; HET: MSE; 1.28A {Streptococcus agalactiae 2603V} | Back alignment and structure |
|---|
Probab=98.46 E-value=5e-07 Score=84.68 Aligned_cols=94 Identities=14% Similarity=0.247 Sum_probs=60.7
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCcccee-eeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIV-RELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~-relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.|+.+++ +.+||++.+....+. ....+..+.-.. ..-..|-..+.|+.+ |||+|||++||+.+++ + .
T Consensus 73 ~~v~~~~---~~ivG~~~~~~~~~~-~~~~~~~g~w~~~~~~~~~i~~l~V~p~----~rg~Gig~~Ll~~~~~---~-~ 140 (201)
T 2pc1_A 73 AWVGIED---GMLATYAAVIDGHEE-VYDAIYEGKWLHDNHRYLTFHRIAISNQ----FRGRGLAQTFLQGLIE---G-H 140 (201)
T ss_dssp EEEEEET---TEEEEEEEEEEECCG-GGGGCBSSCCSSCCSCEEEEEEEEECST----TCSSHHHHHHHHHHHH---H-S
T ss_pred eEEEEEC---CeEEEEEEEecCCch-hhccccccccccCCCcEEEEEEEEECHH----HhCCCHHHHHHHHHHH---h-C
Confidence 4666554 889999999865311 111110000000 000122223347877 9999999999999999 5 5
Q ss_pred CCcEEEEec---CCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVIS---GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~s---~~~a~~fY~klGy~~~g~ 557 (564)
|+..|.+.. |..|.+||+|+||+..|.
T Consensus 141 g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 170 (201)
T 2pc1_A 141 KGPDFRCDTHEKNVTMQHILNKLGYQYCGK 170 (201)
T ss_dssp CCSEEEEEECTTCHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEEEecCCHHHHHHHHHCCCEEEEE
Confidence 899987664 345999999999999874
|
| >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=8.1e-07 Score=95.85 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=63.9
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+.+.+ +.+|||+.+....+ . -.-+++ .+.|+++ |||+|||++||++++++|++ .|
T Consensus 348 ~~va~~~---g~iVG~~~~~~~~~----------~-~~~~I~----~l~V~p~----~rg~GiG~~Ll~~~~~~a~~-~g 404 (456)
T 3d2m_A 348 FSILEHD---GNLYGCAALKTFAE----------A-DCGEIA----CLAVSPQ----AQDGGYGERLLAHIIDKARG-IG 404 (456)
T ss_dssp EEEEEET---TEEEEEEEEEECSS----------T-TEEEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHH-TT
T ss_pred EEEEEEC---CEEEEEEEEEecCC----------C-CEEEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-cC
Confidence 5666655 88999999986521 0 012332 1237776 99999999999999999999 59
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+.++.+. +..|.+||+|+||+..+.
T Consensus 405 ~~~i~l~-N~~a~~fY~k~GF~~~~~ 429 (456)
T 3d2m_A 405 ISRLFAL-STNTGEWFAERGFQTASE 429 (456)
T ss_dssp CCEEEEE-ESSCHHHHHTTTCEEECG
T ss_pred CCEEEEE-cHHHHHHHHHCCCEEeCc
Confidence 9999887 778999999999998774
|
| >3g3s_A GCN5-related N-acetyltransferase; ZP_00874857.1, acetyltransferase (GNAT) family, structural joint center for structural genomics, JCSG; HET: MSE; 1.80A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.2e-07 Score=90.48 Aligned_cols=83 Identities=14% Similarity=0.069 Sum_probs=62.3
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.|+..++ +.+||++++.... ... .++.+ .|+++ |||||+|++||++++++|+++ |
T Consensus 162 ~~v~~~~---g~iVG~~~~~~~~---------~~~---~ei~i-----~v~p~----~rGkGlg~~Ll~~li~~a~~~-g 216 (249)
T 3g3s_A 162 GCVILHK---GQVVSGASSYASY---------SAG---IEIEV-----DTRED----YRGLGLAKACAAQLILACLDR-G 216 (249)
T ss_dssp EEEEEET---TEEEEEEEEEEEE---------TTE---EEEEE-----EECGG----GTTSSHHHHHHHHHHHHHHHT-T
T ss_pred EEEEEEC---CEEEEEEEEEEec---------CCe---EEEEE-----EEChH----hcCCCHHHHHHHHHHHHHHHC-C
Confidence 3666654 7899999886432 011 22222 26665 999999999999999999994 8
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCceE
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGPYM 559 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~~m 559 (564)
+..+...+|..|.+||+|+||+.+|.+-
T Consensus 217 ~~~~~~~~N~~a~~lYeKlGF~~~g~~~ 244 (249)
T 3g3s_A 217 LYPSWDAHTLTSLKLAEKLGYELDKAYQ 244 (249)
T ss_dssp CEEECEESSHHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEeCCCHHHHHHHHHCCCEEeeeEe
Confidence 8755445788899999999999998653
|
| >3tt2_A GCN5-related N-acetyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta sandwich; HET: MES; 2.73A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.3e-07 Score=89.68 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=67.6
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+++.+ +.+|||+.+.... . .+. .+++ .+.|..+ |||+|+|+.|+.++.+++++.
T Consensus 222 ~~~va~~~---g~~vG~~~~~~~~-------~-~~~-----~~i~--~~~v~p~----~rg~G~g~~Ll~~~~~~~~~~- 278 (330)
T 3tt2_A 222 LWLLAVET---DSGHIVGTCLGQE-------T-AGK-----GWIG--SVGVRRP----WRGRGIALALLQEVFGVYYRR- 278 (330)
T ss_dssp GEEEEEET---TTTEEEEEEEEEE-------E-TTE-----EEEE--EEEECGG----GTTSSHHHHHHHHHHHHHHHH-
T ss_pred EEEEEEEC---CEEEEEEEEecCC-------C-CCc-----EEEE--EeeECHH----HhhcCHHHHHHHHHHHHHHHc-
Confidence 45777765 7889999998621 0 011 1222 2346766 999999999999999999995
Q ss_pred CCcEEEEe---cC-CCcHHHHhhCCCeeeC--ceEeeec
Q 008466 531 RSRKMAVI---SG-VGTRHYYRKLGYELEG--PYMVKYL 563 (564)
Q Consensus 531 g~~~i~~~---s~-~~a~~fY~klGy~~~g--~~m~K~l 563 (564)
|+..+.+. +| ..+.+||+|+||+..+ .+|.|.|
T Consensus 279 g~~~i~l~v~~~n~~~a~~~y~~~GF~~~~~~~~~~~~l 317 (330)
T 3tt2_A 279 GVREVELSVDAESRTGAPRLYRRAGMHVKHRYVLHRKEI 317 (330)
T ss_dssp TCCEEEEEEEEETTTCSCHHHHHTTCEEEEEEEEEEEEE
T ss_pred CCCeEEEEEecCCChhHHHHHHHcCCEEeEEEEEEEEEc
Confidence 99998663 56 7899999999999988 4677765
|
| >3tcv_A GCN5-related N-acetyltransferase; GRAM negative coccobacillus, brucellosis, acyl CO-A, arylami transferase; 1.75A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.9e-07 Score=89.03 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=62.1
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+.+. .+++.+||++.+........ .-|+.. +.|+.+ |||+|||+.++..+.++|.+..
T Consensus 99 ~~~~i~~-~~~g~~IG~~~l~~~~~~~~----------~~eig~----~~v~p~----~rgkGig~~ll~~ll~~a~~~~ 159 (246)
T 3tcv_A 99 LFFAVID-KASGKVAGRQALMRIDPANG----------VIEIGS----IYWGPL----ISRRPAATEAQFLFMQYVFDVL 159 (246)
T ss_dssp EEEEEEE-TTTCSEEEEEEEEEEETTTT----------EEEEEE----EEECTT----TTTSHHHHHHHHHHHHHHHHTS
T ss_pred eEEEEEE-CCCCCEEEEEEEeecccccC----------EEEEEE----EEECHH----HcCCCHHHHHHHHHHHHHHHhc
Confidence 3344443 34578999999863321111 112221 125666 9999999999999999998856
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
|+.+|.+. .|..++.||+|+||+.+|.
T Consensus 160 g~~~i~l~v~~~N~~s~~lyek~GF~~~G~ 189 (246)
T 3tcv_A 160 GYRRYEWECHNENGPSRRAAERFGFRFEGI 189 (246)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHTCEEEEE
T ss_pred CcEEEEEEccCCCHHHHHHHHHCCCEEEEE
Confidence 99998654 4667999999999999884
|
| >3te4_A GH12636P, dopamine N acetyltransferase, isoform A; dopamine/acetyl COA, N-acetyltransferase domain; HET: ACO; 1.46A {Drosophila melanogaster} PDB: 3v8i_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7.7e-07 Score=85.03 Aligned_cols=57 Identities=19% Similarity=0.105 Sum_probs=47.5
Q ss_pred ecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEE-ecCCCcHHHHhhCCCeeeC
Q 008466 495 YGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAV-ISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 495 yg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~-~s~~~a~~fY~klGy~~~g 556 (564)
|-..+.|+.+ |||+|||++||++++++|++. |+..+.+ .++..+..||+|+||+..+
T Consensus 127 ~i~~~~v~p~----~rg~Gig~~L~~~~~~~~~~~-g~~~~~~~~~~~~~~~~y~~~Gf~~~~ 184 (215)
T 3te4_A 127 DGKILSVDTN----YRGLGIAGRLTERAYEYMREN-GINVYHVLCSSHYSARVMEKLGFHEVF 184 (215)
T ss_dssp EEEEEEECGG----GTTSSHHHHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHTTCEEEE
T ss_pred EEEEEEECHH----HhCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHHHHHCCCEEEE
Confidence 3334457776 999999999999999999995 9999844 4666789999999999876
|
| >3c26_A Putative acetyltransferase TA0821; NP_394282.1, A putative acetyltransferase, acetyltransferase family, structural genomics; 2.00A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=98.34 E-value=5e-07 Score=90.52 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=62.6
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+++++ +.+||++.+.... .+. -+++ .+.|+++ |||+|+|++||+.++++|++ +
T Consensus 61 ~~~va~~~---g~iVG~~~~~~~~---------~~~---~~I~----~l~V~p~----~rg~GiG~~Ll~~~~~~a~~-~ 116 (266)
T 3c26_A 61 SVYVLRVS---GRPVATIHMEKLP---------DGS---VMLG----GLRVHPE----YRGSRLGMSIMQETIQFLRG-K 116 (266)
T ss_dssp CEEEEEET---TEEEEEEEEEECT---------TSC---EEEE----EEEECGG----GTTSSHHHHHHHHHHHHHBT-T
T ss_pred cEEEEEEC---CEEEEEEEEEEcC---------CCe---EEEE----EEEEChh----hcCCCHHHHHHHHHHHHHHH-c
Confidence 45666655 8899999998542 111 1221 2336776 99999999999999999998 5
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
|++++ +. .|..+.+||+|+||+..+.
T Consensus 117 g~~~i-l~v~~~N~~a~~~Yek~GF~~~~~ 145 (266)
T 3c26_A 117 TERLR-SAVYSWNEPSLRLVHRLGFHQVEE 145 (266)
T ss_dssp BSEEE-EEEETTCHHHHHHHHHHTCEEEEE
T ss_pred CCCEE-EEEcCCCHHHHHHHHHCCCEEeeE
Confidence 99998 54 4668899999999999884
|
| >2ozg_A GCN5-related N-acetyltransferase; YP_325469.1, acetyltransfe (GNAT) family, structural genomics, joint center for struct genomics, JCSG; HET: COA; 2.00A {Anabaena variabilis} SCOP: d.106.1.4 d.108.1.10 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-06 Score=89.87 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=65.2
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+.+++ +.+||++.+..... .+.+ . ..-+.|-..+.|+++ |||||||++||+++++++++ .|
T Consensus 50 ~~va~~~---g~~vG~~~~~~~~~-----~~~g--~--~~~~~~i~~v~V~p~----~Rg~Gig~~Ll~~~~~~~~~-~g 112 (396)
T 2ozg_A 50 FRVIYRE---QKVAGGLAILPMGQ-----WWGG--Q--RVPMAGIAAVGIAPE----YRGDGAAIALIQHTLQEISE-QD 112 (396)
T ss_dssp EEEEEET---TEEEEEEEEEEEEE-----EETT--E--EEEEEEEEEEEECGG----GTTSSHHHHHHHHHHHHHHH-TT
T ss_pred EEEEEEC---CEEEEEEEEEeccc-----eECC--e--ecceeEEEEEEEChh----hccCCHHHHHHHHHHHHHHH-CC
Confidence 6777765 78999999874320 0100 0 112334444557776 99999999999999999999 59
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+..+.+ +..+.+||+|+||+..+.
T Consensus 113 ~~~i~l--n~~a~~~Y~~~GF~~~~~ 136 (396)
T 2ozg_A 113 IPISVL--YPATQRLYRKAGYEQAGS 136 (396)
T ss_dssp CCEEEE--CCSCHHHHHHTTCEEEEE
T ss_pred CeEEEE--ccccHHHHHhcCCeEccc
Confidence 999888 678999999999999875
|
| >2pr1_A Uncharacterized N-acetyltransferase YLBP; YIBP protein, coenzyme A, structural GE PSI-2, protein structure initiative; HET: SUC COA; 3.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-06 Score=79.81 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=40.2
Q ss_pred ccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 499 VPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 499 ~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+.|+++ |||+|||++||+.+++ . |. .+.+.+...|.+||+|+||+..+.
T Consensus 88 l~V~p~----~rg~GiG~~Ll~~~~~----~-g~-~l~~~~~n~a~~fY~k~GF~~~~~ 136 (163)
T 2pr1_A 88 LEVLPG----YQNRGYGRALVEFAKS----F-KM-PIRTNPRMKSAEFWNKMNFKTVKY 136 (163)
T ss_dssp EEECTT----STTSSHHHHHHHHHHT----T-CS-CEEECCCGGGHHHHHHTTCEECCC
T ss_pred EEECHH----HcCCCHHHHHHHHHHH----c-Cc-EEEEecCchHHHHHHHcCCEEeee
Confidence 347877 9999999999999987 2 54 566766558999999999999874
|
| >2wpx_A ORF14; transferase, acetyl transferase, antibiotic biosynthesis; HET: ACO; 2.31A {Streptomyces clavuligerus} PDB: 2wpw_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=89.31 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=64.0
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
...|+++++ +.+||++.+.... . .. .-++. .+.|+.. |||+|||++||+.++++|++
T Consensus 59 ~~~~va~~~---g~~vG~~~~~~~~-~-------~~---~~~i~----~~~v~p~----~r~~Gig~~Ll~~~~~~~~~- 115 (339)
T 2wpx_A 59 LDDWVVRSG---GRVVGALRLALPD-G-------AP---TARVD----QLLVHPG----RRRRGIGRALWAHARELARK- 115 (339)
T ss_dssp EEEEEEEET---TEEEEEEEEEEET-T-------CS---EEEEE----EEEECTT----SCSSSHHHHHHHHHHHHHHH-
T ss_pred eeEEEEEEC---CEEEEEEEEEecC-C-------CC---eEEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-
Confidence 455777755 8899999998541 0 00 12222 1337777 99999999999999999999
Q ss_pred CCCcEEEEec---CC-------CcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVIS---GV-------GTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s---~~-------~a~~fY~klGy~~~g~ 557 (564)
.|+.+|.+.. |. .+..||+|+||+..+.
T Consensus 116 ~g~~~i~~~~~~~n~~g~~~~~~~~~~~~~~Gf~~~~~ 153 (339)
T 2wpx_A 116 HDRTTLTATVVESLPSGPAQDPGPAAFAAAMGAHRSDI 153 (339)
T ss_dssp TTCSEEEEEEEECCSSSCCCCCHHHHHHHHTTCEECSS
T ss_pred CCCcEEEEEeecCCCCcccccchHHHHHHHCCCeeeee
Confidence 5999986543 44 6899999999999885
|
| >2i00_A Acetyltransferase, GNAT family; structural genomics, PSI-2, structure initiative, midwest center for structural genomic transferase; 2.30A {Enterococcus faecalis} SCOP: d.106.1.4 d.108.1.10 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.8e-06 Score=89.58 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=64.0
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+.+++ +.+||++.+.... ..+.+ . ..-+.|...+.|+.+ |||||||++||+++++.+++ .
T Consensus 61 ~~~va~~~---g~lVG~~~~~~~~-----~~~~g--~--~~~~~~i~~v~V~P~----~Rg~Gig~~Ll~~~l~~~~~-~ 123 (406)
T 2i00_A 61 KVFGWFHE---NQLISQIAIYPCE-----VNIHG--A--LYKMGGVTGVGTYPE----YANHGLMKDLIQTALEEMRQ-D 123 (406)
T ss_dssp EEEEEEET---TEEEEEEEEEEEE-----EEETT--E--EEEEEEEEEEEECGG----GTTSCHHHHHHHHHHHHHHH-T
T ss_pred cEEEEEEC---CEEEEEEEEEEEE-----EEECC--E--EEEeccEEEEEEChh----hCCCCHHHHHHHHHHHHHHh-C
Confidence 35677765 8899999875221 00110 0 112344455668887 99999999999999999999 4
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCce
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~~ 558 (564)
|+..+.+... +.+||+|+||+..+..
T Consensus 124 g~~~~~L~~~--~~~fY~r~GF~~~~~~ 149 (406)
T 2i00_A 124 KQWISYLFPY--NIPYYRRKGWEIMSDK 149 (406)
T ss_dssp TCCEEEECCS--CHHHHHHTTCEEEEEE
T ss_pred CCeEEEEEcc--ChhhhhccCceEccce
Confidence 9888777643 6999999999988753
|
| >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-05 Score=75.00 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=104.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEcc
Q 008466 185 ILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGV 264 (564)
Q Consensus 185 I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGv 264 (564)
.|.||.|+.. ++.+.++++.+++. ...+++.|+-- ++++.++.|.++ ++.|.+.+
T Consensus 8 ~~tGGEPll~-~~~~~~l~~~~~~~----------------------g~~~~l~TNG~-l~~~~~~~l~~~-~d~v~isl 62 (182)
T 3can_A 8 TFCGGEPLLH-PEFLIDILKRCGQQ----------------------GIHRAVDTTLL-ARKETVDEVMRN-CELLLIDL 62 (182)
T ss_dssp EECSSTGGGS-HHHHHHHHHHHHHT----------------------TCCEEEECTTC-CCHHHHHHHHHT-CSEEEEEC
T ss_pred EEEcccccCC-HHHHHHHHHHHHHC----------------------CCcEEEECCCC-CCHHHHHHHHhh-CCEEEEEC
Confidence 4789999765 45556677766542 13588999886 788999999988 89999999
Q ss_pred CCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCC-CC-CeEEEeeeeec
Q 008466 265 QSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFREFFESPLF-RA-DGLKIYPTLVI 340 (564)
Q Consensus 265 QS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l-~p-d~i~iy~l~v~ 340 (564)
.+.++++.+.+. |.+.+.+.++++.+++.|+++.+ -++.|+ +++.+++.+.++.+. .+ ++ ..+.+.++.+.
T Consensus 63 d~~~~~~~~~~~-g~~~~~i~~~i~~l~~~g~~v~i~~~v~~~~-n~n~~~~~~~~~~~~---~~~g~~~~~~l~~~~p~ 137 (182)
T 3can_A 63 KSMDSTVHQTFC-DVPNELILKNIRRVAEADFPYYIRIPLIEGV-NADEKNIKLSAEFLA---SLPRHPEIINLLPYHDI 137 (182)
T ss_dssp CCSCHHHHHHHH-SSCSHHHHHHHHHHHHTTCCEEEEEEECBTT-TCSHHHHHHHHHHHH---HSSSCCSEEEEEECCC-
T ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHhCCCeEEEEEEEECCC-CCCHHHHHHHHHHHH---hCcCccceEEEecCccc
Confidence 999999988774 45569999999999999998664 456665 467777777777765 35 67 88888888887
Q ss_pred CCChhHH---HHHcCCCCCCCHHH--HHHHHHHH
Q 008466 341 RGTGLYE---LWKTGRYRNYPPEQ--LVDIVARI 369 (564)
Q Consensus 341 ~GT~L~~---~~~~G~~~~~~~ee--~~~~~~~~ 369 (564)
..+.... .|.-..+++++.++ +.+....+
T Consensus 138 g~~~~~~l~~~y~~~~~~~~~~e~~~l~~~~~~~ 171 (182)
T 3can_A 138 GKGKHAKLGSIYNPKGYKMQTPSEEVQQQCIQIL 171 (182)
T ss_dssp -----------------CCBCCCHHHHHHHHHHH
T ss_pred CHHHHHHhCCcCcccCCCCCCHHHHHHHHHHHHH
Confidence 6554321 22223345555555 44444333
|
| >1p0h_A Hypothetical protein RV0819; GNAT fold, acetyltransferase, coenzyme A complex, MSHD, TRAN; HET: COA ACO; 1.60A {Mycobacterium tuberculosis} SCOP: d.108.1.1 PDB: 1ozp_A* 2c27_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=88.44 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=61.3
Q ss_pred EEEEEeec---CCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 452 TFLSYEDT---RQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 452 ~fls~~d~---~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
+|+++.+. .++.+|||+.+....+. . ...+++ .+.|+++ |||+|+|+.|+..+.+++++
T Consensus 205 ~~va~~~~~~~~~g~~vG~~~~~~~~~~-------~-----~~~~i~--~~~V~p~----~rg~Glg~~ll~~~~~~~~~ 266 (318)
T 1p0h_A 205 LILAFGDSPRERPGRLLGFHWTKVHPDH-------P-----GLGEVY--VLGVDPA----AQRRGLGQMLTSIGIVSLAR 266 (318)
T ss_dssp EEEEEEC------CCEEEEEEEECCTTS-------T-----TEEEEE--EEEECGG----GCSSSHHHHHHHHHHHHHHH
T ss_pred eEEEEeccccCCCCcEEEEEEeeccCCC-------C-----ceEEEE--EEEECHH----hccCCHHHHHHHHHHHHHHH
Confidence 46666210 23789999999865311 0 112222 2457776 99999999999999999999
Q ss_pred cCCC----------cEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRS----------RKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~----------~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
. |+ ..+.+. +|..|..||+|+||+..+.
T Consensus 267 ~-g~~~~~~~~~~~~~i~l~v~~~N~~a~~~y~~~GF~~~~~ 307 (318)
T 1p0h_A 267 R-LGGRKTLDPAVEPAVLLYVESDNVAAVRTYQSLGFTTYSV 307 (318)
T ss_dssp H-C---------CCCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred c-ccccccccccccceEEEEecCCCHHHHHHHHhcCCEEEeE
Confidence 4 99 887554 3567899999999999885
|
| >3r1k_A Enhanced intracellular surviVal protein; GNAT, acetyltransferase, transferase; HET: COA; 1.95A {Mycobacterium tuberculosis} PDB: 3sxo_A 3ryo_A 3uy5_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-06 Score=92.18 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=62.4
Q ss_pred EEEEEEee-cCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 451 ETFLSYED-TRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 451 e~fls~~d-~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
.+|+++++ .+++.+||++.+.... ..+. ++.... +.+-..+.|+.+ |||||||++||+++++.|++.
T Consensus 70 ~~~va~~~~~~~g~lVG~~~~~~~~-----~~~~-gg~~~~--~~~I~~v~V~P~----~Rg~Gig~~Ll~~~l~~a~~~ 137 (428)
T 3r1k_A 70 GAVVVRDGAGPGSEVVGMALYMDLR-----LTVP-GEVVLP--TAGLSFVAVAPT----HRRRGLLRAMCAELHRRIADS 137 (428)
T ss_dssp CEEEEECC----CCEEEEEEEEEEE-----EEET-TTEEEE--EEEEEEEEECTT----SCSSSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEecCCCCCcEEEEEEEEeee-----eccC-CCcccc--eeEEEEEEECHH----HcCCCHHHHHHHHHHHHHHHC
Confidence 45676653 1237899999886321 0000 011111 223334557877 999999999999999999994
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
|+..+.+.. .+..||+|+||+..+.
T Consensus 138 -g~~~~~L~~--~a~~fY~r~GF~~~~~ 162 (428)
T 3r1k_A 138 -GYPVAALHA--SEGGIYGRFGYGPATT 162 (428)
T ss_dssp -TCSEEEEEC--SSTTSSGGGTCEECCE
T ss_pred -CCCEEEEec--CCHHHHHhCCCEEeee
Confidence 998877754 4689999999999885
|
| >3n7z_A Acetyltransferase, GNAT family; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.75A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.3e-06 Score=88.76 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=64.0
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+.+++ +.+||++.+.... ....+ . ..-..|...+.|+.+ |||||||++||+++++.++++
T Consensus 46 ~~~v~~~~---g~lvG~~~~~~~~-----~~~~~--~--~~~~~~i~~v~V~p~----~Rg~Gig~~Ll~~~~~~~~~~- 108 (388)
T 3n7z_A 46 EVYGIMEG---ENLAAKLHLIPFH-----IYIGK--E--KFKMGGVAGVATYPE----YRRSGYVKELLQHSLQTMKKD- 108 (388)
T ss_dssp EEEEEEET---TEEEEEEEEEEEE-----EEETT--E--EEEEEEEEEEEECGG----GGGGCHHHHHHHHHHHHHHHH-
T ss_pred cEEEEEEC---CEEEEEEEEEeEE-----EEECC--E--EEEeeEEEEEEECHH----HCCCChHHHHHHHHHHHHHHC-
Confidence 34777765 8899999864221 00111 0 001133345567877 999999999999999999995
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCce
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~~ 558 (564)
|+..+.+. ..+.+||+|+||+..+..
T Consensus 109 g~~~~~l~--~~a~~~Y~~~Gf~~~~~~ 134 (388)
T 3n7z_A 109 GYTVSMLH--PFAVSFYRKYGWELCANL 134 (388)
T ss_dssp TCCEEEEC--CSCHHHHHTTTCEEEEEE
T ss_pred CCcEEEEc--cCChhhhhhcCcEEeccE
Confidence 99887776 478999999999998753
|
| >2zw5_A Bleomycin acetyltransferase; dimer, two domains; HET: COA; 2.40A {Streptomyces verticillus} PDB: 2zw4_A* 2zw6_A 2zw7_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.1e-06 Score=85.73 Aligned_cols=75 Identities=13% Similarity=0.083 Sum_probs=58.2
Q ss_pred CCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe-
Q 008466 460 RQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI- 538 (564)
Q Consensus 460 ~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~- 538 (564)
+++.+ |++.+.... . ..++..+ |+++ |||||||++||+.++++|.++.|+++|.+.
T Consensus 77 ~~g~~-G~~~~~~~~----------~---~~~ig~~-----v~~~----~~g~G~g~~l~~~l~~~a~~~~g~~~i~~~v 133 (301)
T 2zw5_A 77 DGTVP-GMAGLLGGT----------D---VPGLTWL-----LRRD----SWGHGYATEAAAAVVGHALEDGGLDRVEAWI 133 (301)
T ss_dssp TTBCC-EEEEEESSC----------S---SCEEEEE-----ECTT----STTTTHHHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred CCCCe-EEEEEecCC----------C---eEEEEEE-----ECHh----HcCCCHHHHHHHHHHHHHHhcCCccEEEEEe
Confidence 34788 999997443 1 2334333 5666 999999999999999999654699998654
Q ss_pred --cCCCcHHHHhhCCCeeeCc
Q 008466 539 --SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 --s~~~a~~fY~klGy~~~g~ 557 (564)
.|..+++||+|+||+.+|.
T Consensus 134 ~~~N~~s~~ly~k~GF~~~g~ 154 (301)
T 2zw5_A 134 EAGNRRSLAVAARVGLTERAR 154 (301)
T ss_dssp ESSCHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHHHcCCcCcce
Confidence 3678899999999999885
|
| >2kcw_A Uncharacterized acetyltransferase YJAB; GNAT fold, acyltransferase; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.19 E-value=8.4e-07 Score=78.20 Aligned_cols=75 Identities=21% Similarity=0.399 Sum_probs=54.3
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+.+.+ ++.+||++.+.. .+++ .+.|+++ |||+|||++|++.++++|+.
T Consensus 52 ~~v~~~~--~~~~vG~~~~~~-----------------~~i~----~~~v~p~----~rg~Gig~~ll~~~~~~~~~--- 101 (147)
T 2kcw_A 52 LWVAVNE--RDQPVGFMLLSG-----------------QHMD----ALFIDPD----VRGCGVGRVLVEHALSMAPE--- 101 (147)
T ss_dssp CEEEEET--TSCEEEEEEEET-----------------TEEE----EEEECHH----HHTTTHHHHHHHHHHHHCTT---
T ss_pred EEEEEcC--CCCEEEEEEEec-----------------ceec----cEEECHH----HhCCCHHHHHHHHHHHhccc---
Confidence 4555543 378899999871 1122 1236665 99999999999999999853
Q ss_pred CcEEEEe-cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI-SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~-s~~~a~~fY~klGy~~~g~ 557 (564)
..+.+. .|..+.+||+|+||+..+.
T Consensus 102 -~~~~v~~~N~~a~~~y~k~Gf~~~~~ 127 (147)
T 2kcw_A 102 -LTTNVNEQNEQAVGFYKKVGFKVTGR 127 (147)
T ss_dssp -CEEEEETTCHHHHHHHHHHTEEEEEE
T ss_pred -eEEEEecCChHHHHHHHHCCCEEece
Confidence 244454 4678999999999998773
|
| >2hv2_A Hypothetical protein; PSI, protein structure initiative, midwest center for struct genomics, MCSG, structural genomics, unknown function; HET: EPE PG4; 2.40A {Enterococcus faecalis} SCOP: d.106.1.4 d.108.1.10 | Back alignment and structure |
|---|
Probab=98.19 E-value=7.2e-06 Score=86.20 Aligned_cols=89 Identities=15% Similarity=0.058 Sum_probs=63.9
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+.+++ +.+||++.+.... ..+.+ . ..-+.+...+.|+.+ |||||||++||+++++.+++.
T Consensus 48 ~~~va~~~---g~~vg~~~~~~~~-----~~~~g--~--~~~~~~i~~v~V~p~----~Rg~Gig~~Ll~~~~~~~~~~- 110 (400)
T 2hv2_A 48 QSYGFLID---EQLTSQVMATPFQ-----VNFHG--V--RYPMAGIGYVASYPE----YRGEGGISAIMKEMLADLAKQ- 110 (400)
T ss_dssp EEEEEEET---TEEEEEEEEEEEE-----EEETT--E--EEEEEEEEEEEECTT----CCSSCHHHHHHHHHHHHHHHT-
T ss_pred cEEEEEEC---CEEEEEEEEeeeE-----EEECC--E--EEEeccEeEEEEChh----hcCCCHHHHHHHHHHHHHHHc-
Confidence 45777765 8899999875221 00111 0 111244455668887 999999999999999999994
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCce
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~~ 558 (564)
|+..+.+.. .+.+||+|+||+..+..
T Consensus 111 g~~~~~L~~--~~~~~Y~~~GF~~~~~~ 136 (400)
T 2hv2_A 111 KVALSYLAP--FSYPFYRQYGYEQTFEQ 136 (400)
T ss_dssp TCCEEEECC--SCHHHHHTTTCEECCEE
T ss_pred CceEEEEec--CCHhHHHhcCCEEeceE
Confidence 988777754 35999999999998853
|
| >2ft0_A TDP-fucosamine acetyltransferase; GNAT fold acetyltransferase, structural genomics, montreal-K bacterial structural genomics initiative, BSGI; HET: ACO; 1.66A {Escherichia coli} PDB: 2fs5_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.1e-06 Score=81.46 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=58.6
Q ss_pred eEEEEEE-eecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 450 WETFLSY-EDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 450 ~e~fls~-~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
...|+++ .+ +.+||++.++... . . ...+| |.. |+|||++||..++++|++
T Consensus 148 ~~~~va~~~~---g~ivG~~~l~~~~---------~-~----~~~i~-----v~~-------g~GiG~~Ll~~~~~~a~~ 198 (235)
T 2ft0_A 148 HQCLILRAAS---GDIRGYVSLRELN---------A-T----DARIG-----LLA-------GRGAGAELMQTALNWAYA 198 (235)
T ss_dssp EEEEEEECTT---SCEEEEEEEEECS---------S-S----EEEEE-----EEE-------CTTCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCC---CcEEEEEEEEecC---------C-C----ceEEE-----EEc-------CCCHHHHHHHHHHHHHHH
Confidence 4456666 43 7899999998542 0 0 12232 332 999999999999999999
Q ss_pred cCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.|+.++.+. .|..|.+||+|+||+..+.
T Consensus 199 -~g~~~i~l~v~~~N~~A~~lY~k~GF~~~~~ 229 (235)
T 2ft0_A 199 -RGKTTLRVATQMGNTAALKRYIQSGANVEST 229 (235)
T ss_dssp -TTCSEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred -cCCCEEEEEEecCCHHHHHHHHHCCCEEeEE
Confidence 599998665 3567899999999999874
|
| >3sxn_A Enhanced intracellular surviVal protein; GNAT fold, acetyltransferase, acetyl COA binding, transferas; HET: COA; 2.03A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.11 E-value=6.8e-06 Score=87.70 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=63.4
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+++++ +++.+||++.+.... ..+.+ ...+ -+.+-..|.|+.+ |||||||++||+++++.++++
T Consensus 66 ~~~va~~~-~~g~lvG~~~~~~~~-----~~~~g-~~~~--~~~~I~~v~V~P~----~Rg~Gig~~Ll~~~l~~~~~~- 131 (422)
T 3sxn_A 66 ATVVVPDE-TDDAFVGQSLYLDMQ-----LTVPG-GEVL--PVAGISFVAVAPT----HRRRGVLRAMYTELHDRIARA- 131 (422)
T ss_dssp CEEEEECT-TSSSEEEEEEEEEEE-----EECTT-SCEE--EEEEEEEEEECTT----TTTSSHHHHHHHHHHHHHHHH-
T ss_pred cEEEEEEC-CCCcEEEEEEEEEeE-----eecCC-Cccc--ccceEEEEEECHH----HcCCCHHHHHHHHHHHHHHhC-
Confidence 35666654 237889999876321 00100 1011 1233344557887 999999999999999999995
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCce
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~~ 558 (564)
|+..+.+.+ .+..||+|+||+..+..
T Consensus 132 g~~~~~L~~--~~~~fY~r~GF~~~~~~ 157 (422)
T 3sxn_A 132 GYPLAVLTA--SEGGIYGRFGYGVATIE 157 (422)
T ss_dssp TCSEEEECC--SSTTSSGGGTCEECCEE
T ss_pred CCcEEEEec--CCHHHHHhCCCEEecee
Confidence 988777753 46789999999998853
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-05 Score=89.80 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=62.6
Q ss_pred CCCeEEEEEEeecCCCeEEEEEEEEecCCC-------------CCccccC----------CccceeeeeeeecccccccC
Q 008466 447 NEGWETFLSYEDTRQDILVGLLRLRKCGRN-------------VTCPELM----------GKCSIVRELHVYGTAVPVHG 503 (564)
Q Consensus 447 ~gg~e~fls~~d~~~~~lvG~lrlr~~~~~-------------~~~~el~----------~~~~~~relhvyg~~~~v~~ 503 (564)
..+..+|+..++ +.+||++.+....+- -++-.+. ...+-..+.+++ .+.|+.
T Consensus 391 ~p~~~l~va~~~---g~IVG~i~v~~eG~l~~~~~~~~~~g~rRp~G~lip~~l~~~~~~~e~~~~~~~~I~--~IAV~P 465 (671)
T 2zpa_A 391 APGQHFLQAAGE---NEIAGALWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGNNPLAATLRGRRVS--RIAVHP 465 (671)
T ss_dssp CTTEEEEEEECS---SSEEEEEEEEEEECCCHHHHHHHHHTSCCCSSCHHHHHHHHHSSCTTGGGSEEEEEE--EEEECT
T ss_pred CCCceEEEEEEC---CeEEEEEEEEEcCCcCHHHHHHHHhcccCCCCcchhHHHHHhhcchhhcccCceEEE--EEEECH
Confidence 455677777655 788999999765320 0000000 000111222322 234787
Q ss_pred CCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeee
Q 008466 504 READKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELE 555 (564)
Q Consensus 504 ~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~ 555 (564)
+ |||+|||++||+++|+.|+. .++..+.+..+..+..||+|+||+..
T Consensus 466 ~----~rg~GiG~~LL~~~e~~a~~-~~~l~v~~~~n~~ai~FYek~GF~~v 512 (671)
T 2zpa_A 466 A----RQREGTGRQLIAGALQYTQD-LDYLSVSFGYTGELWRFWQRCGFVLV 512 (671)
T ss_dssp T----SCSSSHHHHHHHHHHHTCCS-CSEEEEEEECCHHHHHHHHHTTCEEE
T ss_pred H----HcCCCHHHHHHHHHHHHHhc-CCEEEEEecCCHHHHHHHHHCCCEEE
Confidence 7 99999999999999998844 24433334467789999999999986
|
| >3tt2_A GCN5-related N-acetyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta sandwich; HET: MES; 2.73A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.2e-05 Score=80.62 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=54.2
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC------CCcE
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH------RSRK 534 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~------g~~~ 534 (564)
++.+||++.+.... .. ..++.+ .|+.. |||+|||++||++++++|++.. +...
T Consensus 68 ~g~~vG~~~~~~~~----------~~--~~~~~~-----~V~p~----~rg~Gig~~Ll~~~~~~~~~~~~~~~~~~~~~ 126 (330)
T 3tt2_A 68 DGEAAAYADVLNRR----------YV--QLSVYG-----YVHPR----FRGMGLGTWLVQWGEEWIQDRMHLAPAEAQVT 126 (330)
T ss_dssp TSSEEEEEEEEEET----------TT--EEEEEE-----EECTT----STTSSHHHHHHHHHHHHHHHHGGGSCTTBCEE
T ss_pred CCcEEEEEEEEecC----------Ce--EEEEEE-----EECcc----ccCccHHHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 37899999995332 11 122223 37877 9999999999999999999831 3344
Q ss_pred E--EEe-cCCCcHHHHhhCCCeeeCc
Q 008466 535 M--AVI-SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 535 i--~~~-s~~~a~~fY~klGy~~~g~ 557 (564)
| .+. .+..+..||+++||...+.
T Consensus 127 l~~~~~~~~~~a~~~y~~~Gf~~~~~ 152 (330)
T 3tt2_A 127 VQHYIRASSTSALRLMEQHGYRPVRD 152 (330)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred EEeccccCChHHHHHHHhCCCceEEE
Confidence 4 233 3556899999999998764
|
| >4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=4.3e-05 Score=79.86 Aligned_cols=120 Identities=17% Similarity=0.113 Sum_probs=81.7
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEE
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEI 262 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsi 262 (564)
..|.+|.+--.+|.+..-.+++.+.+.+..+ +...++|-|.-+.++ .|..|...|-.+|.+
T Consensus 161 ~~i~~g~~TDpyp~E~~~~ltr~~le~l~~~-----------------~~~~v~i~TKs~lid--~L~~l~~~~~v~V~~ 221 (368)
T 4fhd_A 161 TRFEAACTSDIVGIDHLTHSLKKAIEFIGAT-----------------DYGRLRFVTKYEHVD--HLLDARHNGKTRFRF 221 (368)
T ss_dssp EEEESCSSBCHHHHHTTTCHHHHHHHHHHHC-----------------SSEEEEEEESCCCCG--GGTTCCCTTCEEEEE
T ss_pred eEEEEEcCCCcchhhHHHhHHHHHHHHHHhC-----------------CCceEEEEeCCcCHH--HHHhcCcCCceEEEE
Confidence 3444444333346665556676666666521 235688888665453 344444556667766
Q ss_pred ccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH-HHHHHHHHHhc
Q 008466 263 GVQSTYEDVARDTNRG-HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE-RDLESFREFFE 323 (564)
Q Consensus 263 GvQS~~d~vL~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e-~~~~t~~~~~~ 323 (564)
.+-| +++.+.+-.+ -+.++-++|++.+.++|+++.+.+.+=+|+++++ +..+.++.+++
T Consensus 222 Sitt--~~l~r~~EP~aps~~~RL~Ai~~l~~aGipv~v~iaPIiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 222 SINS--RYVINHFEPGTSSFDGRLAAARKVAGAGYKLGFVVAPIYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp EECC--HHHHHHHCTTSCCHHHHHHHHHHHHHTTCEEEEEEEEECCCTTHHHHHHHHHHHHHH
T ss_pred EEcC--HHHHHHcCCCCCCHHHHHHHHHHHHHCCCeEEEEEeCcCCCCCCHHHHHHHHHHHHH
Confidence 6643 7888888865 4789999999999999999999999999998875 45556666654
|
| >1sqh_A Hypothetical protein CG14615-PA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Drosophila melanogaster} SCOP: d.108.1.5 | Back alignment and structure |
|---|
Probab=97.82 E-value=4.1e-05 Score=78.42 Aligned_cols=51 Identities=18% Similarity=0.330 Sum_probs=43.2
Q ss_pred ccCCCchhhhhcCHHHHHHHHHHHHHH-hcCCCcEEEE---ecCCCcHHHHhhCCCeeeCc
Q 008466 501 VHGREADKLQHQGYGTLLMEEAERIAL-GEHRSRKMAV---ISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 501 v~~~~~~~~q~~GiG~~Lm~~aE~~A~-~~~g~~~i~~---~s~~~a~~fY~klGy~~~g~ 557 (564)
|.++ |||+|||++||..+.++++ + .|+. +.+ .+|..|++||+|+||+.+|.
T Consensus 239 V~p~----~rgkGiG~~ll~~l~~~~~~~-~g~~-i~l~V~~~N~~A~~lyeklGF~~~g~ 293 (312)
T 1sqh_A 239 VLPK----AERRGLGGLLAAAMSREIARG-EEIT-LTAWIVATNWRSEALLKRIGYQKDLV 293 (312)
T ss_dssp ECGG----GCSSSHHHHHHHHHHHHHHHH-SCSC-EEEEEETTCHHHHHHHHHHTCEEEEE
T ss_pred ECHH----HcCCCHHHHHHHHHHHHHHHh-CCCe-EEEEEeCCCHHHHHHHHHCCCEEeee
Confidence 6666 9999999999999999998 6 5887 532 35778999999999998874
|
| >1ro5_A Autoinducer synthesis protein LASI; alpha-beta-alpha sandwich, phosphopantetheine fold, signalin; 2.30A {Pseudomonas aeruginosa} SCOP: d.108.1.3 | Back alignment and structure |
|---|
Probab=97.81 E-value=2.9e-05 Score=74.46 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=65.7
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCC-----ccccCCccceeeeee-eecccccccCCCchhhhh----cCHHHHHH
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVT-----CPELMGKCSIVRELH-VYGTAVPVHGREADKLQH----QGYGTLLM 519 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~-----~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~----~GiG~~Lm 519 (564)
.-+++.+.+ +.+||.+||.... .++ -+++-++..+-+.-+ +-.+=+.|+++ +|+ .|+|..||
T Consensus 54 ~~~lv~~~~---g~~vGt~Rll~~~-~~~~l~~~f~~~~~~~~~p~~~~~~ei~R~aV~~~----~r~~~~~~~v~~~L~ 125 (201)
T 1ro5_A 54 PYYMLIQED---GQVFGCWRILDTT-GPYMLKNTFPELLHGKEAPCSPHIWELSRFAINSG----QKGSLGFSDCTLEAM 125 (201)
T ss_dssp CEEEEEEET---TEEEEEEEEEETT-SCCHHHHTCGGGGTTCCCCCCTTEEEEEEEEECCS----TTCCSCSHHHHHHHH
T ss_pred CEEEEEEeC---CeEEEEEecCCCC-CCchhhhhhhhhcCCCCCCCCCCEEEeeeeEECch----hhccccchHHHHHHH
Confidence 345556654 7899999998543 221 111110010100000 11122346665 787 78999999
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCee--eCc
Q 008466 520 EEAERIALGEHRSRKMAVISGVGTRHYYRKLGYEL--EGP 557 (564)
Q Consensus 520 ~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~--~g~ 557 (564)
..++++|++ +|++.+.+.++..+.+||+|+||.. .|+
T Consensus 126 ~~~~~~a~~-~g~~~~~~~a~~~~~~fy~r~G~~~~~~G~ 164 (201)
T 1ro5_A 126 RALARYSLQ-NDIQTLVTVTTVGVEKMMIRAGLDVSRFGP 164 (201)
T ss_dssp HHHHHHHHT-TTCCEEEEEEEHHHHHHHHHTTCEEEESSC
T ss_pred HHHHHHHHH-CCCCEEEEEECHHHHHHHHHcCCCeEECCC
Confidence 999999999 5999999999999999999999974 663
|
| >1p0h_A Hypothetical protein RV0819; GNAT fold, acetyltransferase, coenzyme A complex, MSHD, TRAN; HET: COA ACO; 1.60A {Mycobacterium tuberculosis} SCOP: d.108.1.1 PDB: 1ozp_A* 2c27_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.3e-05 Score=77.67 Aligned_cols=84 Identities=20% Similarity=0.162 Sum_probs=56.1
Q ss_pred eEEEEEEeecCC-CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 450 WETFLSYEDTRQ-DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 450 ~e~fls~~d~~~-~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
...|+++++ ++ +.+|||+.+....+. .. -.+.+ .|+.+ |||+|+|++||+++++++..
T Consensus 50 ~~~~v~~~~-~~~g~~vG~~~~~~~~~~---------~~--~~~~l-----~v~p~----~rg~Gig~~Ll~~~~~~~~~ 108 (318)
T 1p0h_A 50 TEHLLVAGS-RPGGPIIGYLNLSPPRGA---------GG--AMAEL-----VVHPQ----SRRRGIGTAMARAALAKTAG 108 (318)
T ss_dssp SEEEEEECS-STTCCEEEEEEEECC------------CC--CEEEE-----EECGG----GCSSSHHHHHHHHHHHHTTT
T ss_pred CcEEEEEeC-CCCCcEEEEEEEECCCCC---------Cc--EEEEE-----EECcc----ccCCCHHHHHHHHHHHhhcC
Confidence 345676553 22 678999999854310 00 01122 37776 99999999999999988743
Q ss_pred cCCCcEEEEe-cCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAVI-SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~~-s~~~a~~fY~klGy~~~g~ 557 (564)
.+ .+.+. .+..+..||+++||+..+.
T Consensus 109 --~~-~~~~~~~~~~a~~~y~~~Gf~~~~~ 135 (318)
T 1p0h_A 109 --RN-QFWAHGTLDPARATASALGLVGVRE 135 (318)
T ss_dssp --CC-EEEEGGGCHHHHHHHHHTTCEEEEE
T ss_pred --EE-EEEEcCCCHHHHHHHHHCCCeeEeE
Confidence 22 33333 4567899999999998874
|
| >1xmt_A Putative acetyltransferase; structural genomics, protein structure initiative, CESG, AT1G77540, center for eukaryotic structural genomics; 1.15A {Arabidopsis thaliana} SCOP: d.108.1.1 PDB: 2q44_A 2evn_A 2il4_A* 2q4y_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=3.2e-05 Score=66.26 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=38.5
Q ss_pred ccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHH-HHhhCC-Ce
Q 008466 501 VHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRH-YYRKLG-YE 553 (564)
Q Consensus 501 v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~-fY~klG-y~ 553 (564)
|+++ |||+|||++||+.++++|++ .|++.+.+. ..+.+ ||+|+. |.
T Consensus 44 V~~~----~rg~GiG~~Ll~~~~~~a~~-~g~~~i~l~--~~~~~~f~~k~~~~~ 91 (103)
T 1xmt_A 44 VPSF----KRGLGLASHLCVAAFEHASS-HSISIIPSC--SYVSDTFLPRNPSWK 91 (103)
T ss_dssp CCGG----GTTSCHHHHHHHHHHHHHHH-TTCEEEECS--HHHHHTHHHHCGGGG
T ss_pred ECHH----HcCCCHHHHHHHHHHHHHHH-cCCeEEEEe--hhhhHHHHHhChhHH
Confidence 7776 99999999999999999999 499877544 35677 999995 65
|
| >3p2h_A AHL synthase; acyl-ACP binding, SAM binding, signaling protein-I MTA complex, signaling protein-inhibitor complex; HET: MTA NOO; 2.00A {Burkholderia glumae} PDB: 3p2f_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00027 Score=67.89 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=59.5
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCC-----CccccCCccceeeeee-eecccccccCCCchhh-hh----cCHHHHHH
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNV-----TCPELMGKCSIVRELH-VYGTAVPVHGREADKL-QH----QGYGTLLM 519 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~-----~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~-q~----~GiG~~Lm 519 (564)
.+++-..+ +++.+||..||.... .+ +-+++-.+ .+.+.-+ +-.+=+.|++. + |+ .+.|..||
T Consensus 52 ~h~lv~~~-~~g~~vgt~Rll~~~-~~~~l~~~f~~l~~~-~~p~~~~~~EisR~aV~~~----~rR~~~g~~~~~~~L~ 124 (201)
T 3p2h_A 52 TVYVLGRD-ANGEICGCARLLPTT-RPYLLQEVFPHLLAD-EAPRSAHVWELSRFAATPE----EGADAGSLAWSVRPML 124 (201)
T ss_dssp CEEEEEEC-TTSCEEEEEEEEETT-SCCHHHHTCGGGCSS-CCCCCTTEEEEEEEEEC--------------CTTHHHHH
T ss_pred CEEEEEEc-CCCeEEEEEEecccc-CCccccccChhhcCC-ccCCCCCEEEEEEEEEcch----hcccccccChHHHHHH
Confidence 44554443 347899999998543 22 11222111 1111001 11222346665 6 54 34699999
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCee
Q 008466 520 EEAERIALGEHRSRKMAVISGVGTRHYYRKLGYEL 554 (564)
Q Consensus 520 ~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~ 554 (564)
..++++|++ +|++.+...++..+.+||+|+||..
T Consensus 125 ~~~~~~a~~-~g~~~~~~~aq~~~~~~y~rlG~~~ 158 (201)
T 3p2h_A 125 AAAVECAAR-RGARQLIGVTFCSMERMFRRIGVHA 158 (201)
T ss_dssp HHHHHHHHH-TTCSEEEEEEEHHHHHHHHHHTCEE
T ss_pred HHHHHHHHH-CCCCEEEEEECHHHHHHHHHcCCCe
Confidence 999999999 5999999999999999999999985
|
| >1kzf_A Acyl-homoserinelactone synthase ESAI; alpha-beta, autoinducer synthase, quorum sensing, bacterial pathogenesis, ligase; 1.80A {Pantoea stewartii subsp} SCOP: d.108.1.3 PDB: 1k4j_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00027 Score=69.27 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=63.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCc-----cccCCccceeeeeeeecccccccCCCchhhhhcC-------HHHH
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTC-----PELMGKCSIVRELHVYGTAVPVHGREADKLQHQG-------YGTL 517 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~-----~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~G-------iG~~ 517 (564)
..+++.+. ++.+||..||.... .++. +++-++..+.+.- +--+=+.|++ + |++| +|..
T Consensus 72 ~~hll~~~---~g~~Vgt~RLlp~~-~~~~l~~~f~~~~~~~~~p~~~-~Ei~R~aV~~----~-r~~g~~~~~~~v~~~ 141 (230)
T 1kzf_A 72 TRYILGIC---EGQLVCSVRFTSLD-RPNMITHTFQHCFSDVTLPAYG-TESSRFFVDK----A-RARALLGEHYPISQV 141 (230)
T ss_dssp CEEEEEEE---TTEEEEEEEEEETT-SCCCCCCCTHHHHTTSCCCSSC-EEEEEEEECH----H-HHHHHHCTTCCHHHH
T ss_pred CeEEEEEc---CCeEEEEEeecCCC-cchhhcCcChhhcCCccCCCCC-eEEEEEEEcc----c-cccccccchhHHHHH
Confidence 45677764 37899999998543 2211 0000000000100 1111223543 2 6665 9999
Q ss_pred HHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCee--eCc
Q 008466 518 LMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYEL--EGP 557 (564)
Q Consensus 518 Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~--~g~ 557 (564)
||..++++|++ +|++.+...++..+.+||+|+||.. .|+
T Consensus 142 L~~al~~~a~~-~G~~~l~~~aq~~~~~fy~r~G~~~~~~G~ 182 (230)
T 1kzf_A 142 LFLAMVNWAQN-NAYGNIYTIVSRAMLKILTRSGWQIKVIKE 182 (230)
T ss_dssp HHHHHHHHHHH-TTCSEEEEEEEHHHHHHHHHHCCCCEEEEE
T ss_pred HHHHHHHHHHH-CCCCEEEEEeCHHHHHHHHHcCCCeEECCC
Confidence 99999999999 5999999999999999999999964 553
|
| >3shp_A Putative acetyltransferase STHE_0691; PSI-biology, midwest center for structural genomics, MCSG; HET: SRT; 2.21A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0017 Score=59.66 Aligned_cols=84 Identities=14% Similarity=0.049 Sum_probs=54.1
Q ss_pred EEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCC
Q 008466 453 FLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRS 532 (564)
Q Consensus 453 fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~ 532 (564)
+.+.++.+++.+||++.+.... +. -|+.. +...-++ ..+||| +.++..+.++|.+..|+
T Consensus 61 ~~~i~~~~~~~~iG~~~l~~~~----------~~---~eig~-~~~~~i~---~~~~~G----~ea~~~ll~~af~~~~~ 119 (176)
T 3shp_A 61 LLAIVRRSDEAVVGSCRIEFGK----------QT---ASLRF-HMAPWLD---DADVLR----AEALELVVPWLRDEHEL 119 (176)
T ss_dssp EEEEEETTTCCEEEEEEEEECS----------SE---EEEEE-EECTTCS---CHHHHH----HHHHHHHHHHHHHHSCC
T ss_pred EEEEEECCCCcEEEEEEEecCC----------CE---EEEEE-eecceec---ChhHhh----HHHHHHHHHHHHhhCCe
Confidence 3334444568899999993211 11 12222 1100131 123777 78888888888765799
Q ss_pred cEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 533 RKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 533 ~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
++|.+. .|..|.++|+|+||+.+|.
T Consensus 120 ~~i~~~v~~~N~~s~~l~ek~GF~~~G~ 147 (176)
T 3shp_A 120 LVITVEIAADEQRTLAAAEAAGLKAAVR 147 (176)
T ss_dssp SEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEEcCCCHHHHHHHHHCCCEEEEE
Confidence 998543 5778999999999999984
|
| >1bob_A HAT1, histone acetyltransferase; histone modification, acetyl coenzyme A binding-protein; HET: ACO; 2.30A {Saccharomyces cerevisiae} SCOP: d.108.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0037 Score=64.10 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=51.2
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCc---cceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHH-
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGK---CSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAE- 523 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~---~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE- 523 (564)
..|++|+.++. .++.+|||+.+-.-...+...+++.. ....|-=| +.|... |||+|+|++|++.++
T Consensus 172 ~~w~~~~v~e~-~~~~ivG~~t~y~~~~~~~~~~f~~~~~~~~R~rIsq-----~lVlPp----yQgkGiG~~Ll~~i~~ 241 (320)
T 1bob_A 172 PSWQIYWLLNK-KTKELIGFVTTYKYWHYLGAKSFDEDIDKKFRAKISQ-----FLIFPP----YQNKGHGSCLYEAIIQ 241 (320)
T ss_dssp TTEEEEEEEET-TTCCEEEEEEEEEECCC---------CCCCEEEEEEE-----EEECGG----GCSSSHHHHHHHHHHH
T ss_pred CCceEEEEEEc-cCCcEEEEEEEEeeeccCCcccccccccCCceEEEEE-----EEEcHH----HhCCCHHHHHHHHHHH
Confidence 56899999985 35788999998632211111112100 11112222 337776 999999999999999
Q ss_pred HHHHhcCCCcEEEEec
Q 008466 524 RIALGEHRSRKMAVIS 539 (564)
Q Consensus 524 ~~A~~~~g~~~i~~~s 539 (564)
.++++ .|+.+|.|..
T Consensus 242 ~~~~~-~~i~~ItVeD 256 (320)
T 1bob_A 242 SWLED-KSITEITVED 256 (320)
T ss_dssp HHHHC-TTEEEEEESS
T ss_pred HHHhc-CCCceEEEEC
Confidence 67776 5999998853
|
| >3dns_A Ribosomal-protein-alanine acetyltransferase; N-terminal domain of ribosomal-protein-alanine acetyltransfe MCSG, PSI; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.013 Score=52.48 Aligned_cols=79 Identities=13% Similarity=0.256 Sum_probs=57.4
Q ss_pred EeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcC---HHHHHHHHHHHHHHhcCCC
Q 008466 456 YEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQG---YGTLLMEEAERIALGEHRS 532 (564)
Q Consensus 456 ~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~G---iG~~Lm~~aE~~A~~~~g~ 532 (564)
.++ +++.+||.+.+.--+.. .+.+ ++ |. .++ + - |+| +|+.-|.-+-++|-.+.++
T Consensus 24 I~~-~~~~~IG~i~i~~Id~~-------nr~a---~i---~I--~Ig-k----~-gkG~~~ygtEAl~l~l~y~F~elnl 81 (135)
T 3dns_A 24 ITD-KYGITIGRIFIVDLNKD-------NRFC---MF---RM--KIY-K----Q-GKSINTYIKEILSVFMEFLFKSNDI 81 (135)
T ss_dssp EEE-TTCCEEEEEEEEEEETT-------TTEE---EE---EE--EEC-C----C-SSCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred EEC-CCCCEEEEEEEEEeccc-------cCEE---EE---EE--EEe-e----C-CCChHHHHHHHHHHHHHHHHHhcCc
Confidence 344 46889999998632200 1222 11 22 245 3 2 899 9999999999999887899
Q ss_pred cEEEEe--cCCCcHHHHhhCCCeeeCc
Q 008466 533 RKMAVI--SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 533 ~~i~~~--s~~~a~~fY~klGy~~~g~ 557 (564)
++|.+. +. .|.+.|+|+||+.+|.
T Consensus 82 hKi~l~v~~~-~ai~~yeKlGF~~EG~ 107 (135)
T 3dns_A 82 NKVNIIVDEE-VSTQPFVELGFAFEGI 107 (135)
T ss_dssp SEEEEEEETT-SCSHHHHHTTCEEEEE
T ss_pred eEEEEEEecH-HHHHHHHHcCCeEeee
Confidence 998654 56 8999999999999994
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=1.4 Score=44.31 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=82.9
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC--CHHHHHHHHHHHHHcCCcEEEEEe--cCCCCC---CHHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH--TVAAVADCFCLAKDAGFKVVAHMM--PDLPNV---GVERDLES 317 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh--t~~~~~~ai~~lr~~G~~v~~~lI--~GLPge---t~e~~~~t 317 (564)
+.+.++...++|++.|.+-.-+-+....+.+++.. ..+.+.++++.+++.|+.+..+++ +|.|.+ +++.+.+.
T Consensus 82 ~~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~ 161 (298)
T 2cw6_A 82 NLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEV 161 (298)
T ss_dssp SHHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHH
T ss_pred CHHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHH
Confidence 57889999999999999977444344556777743 457888899999999999988887 555643 57777788
Q ss_pred HHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 318 FREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 318 ~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+. +++++.|.+-- | -| ..++++..+++..+.+.+|
T Consensus 162 ~~~~~---~~Ga~~i~l~D------T-------~G---~~~P~~~~~lv~~l~~~~~ 199 (298)
T 2cw6_A 162 TKKFY---SMGCYEISLGD------T-------IG---VGTPGIMKDMLSAVMQEVP 199 (298)
T ss_dssp HHHHH---HTTCSEEEEEE------T-------TS---CCCHHHHHHHHHHHHHHSC
T ss_pred HHHHH---HcCCCEEEecC------C-------CC---CcCHHHHHHHHHHHHHhCC
Confidence 87776 46788877652 2 12 2578888888888888775
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=90.59 E-value=2.8 Score=41.04 Aligned_cols=122 Identities=19% Similarity=0.176 Sum_probs=86.1
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcC-CCchh-hHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCC
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSG-HTSAN-VEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCT 258 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~-~~~~~-l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~ 258 (564)
|..+ |++||+...|.+.+++.++..+++--. +..-. .|-++.. ..-++.++..++.|++
T Consensus 39 ID~lKfg~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGTl~E~~~~q------------------g~~~~yl~~~k~lGf~ 100 (251)
T 1qwg_A 39 IDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSK------------------GKFDEFLNECEKLGFE 100 (251)
T ss_dssp CSEEEECTTGGGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHT------------------TCHHHHHHHHHHHTCC
T ss_pred cceEEecCceeeecCHHHHHHHHHHHHHcCCeEECCcHHHHHHHHc------------------CcHHHHHHHHHHcCCC
Confidence 7788 899999999999999988877653210 01111 2222211 1457899999999999
Q ss_pred eEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCC----CCCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 259 RLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLP----NVGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLP----get~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
.|+|.-=|.+ .+.++-.+.++.+++.||++...+=.-.| -.+++.+.+.++..++ .+.+.|-+
T Consensus 101 ~iEiS~G~i~----------l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~Le---AGA~~Vii 167 (251)
T 1qwg_A 101 AVEISDGSSD----------ISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLD---AGADYVII 167 (251)
T ss_dssp EEEECCSSSC----------CCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHH---HTCSEEEE
T ss_pred EEEECCCccc----------CCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHH---CCCcEEEE
Confidence 9999876653 56788899999999999998765511112 2467888888888875 45677654
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=88.54 E-value=9.5 Score=38.95 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=82.2
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
+.+.+-+.|.....+.++...++|++.+.|-. +.++ .+...++++.+++.|+.+...++-. |..+++
T Consensus 83 ~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I~~-~~s~-----------~~~~~~~i~~ak~~G~~v~~~~~~a-~~~~~e 149 (345)
T 1nvm_A 83 AQIATLLLPGIGSVHDLKNAYQAGARVVRVAT-HCTE-----------ADVSKQHIEYARNLGMDTVGFLMMS-HMIPAE 149 (345)
T ss_dssp SEEEEEECBTTBCHHHHHHHHHHTCCEEEEEE-ETTC-----------GGGGHHHHHHHHHHTCEEEEEEEST-TSSCHH
T ss_pred CEEEEEecCCcccHHHHHHHHhCCcCEEEEEE-eccH-----------HHHHHHHHHHHHHCCCEEEEEEEeC-CCCCHH
Confidence 45555556776788999999999999888864 3332 2567788889999999988887654 677888
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
.+.+.++.+. .++++.|.+- +| .|. .++++..+++..+++.+|+.
T Consensus 150 ~~~~ia~~~~---~~Ga~~i~l~------DT-------~G~---~~P~~v~~lv~~l~~~~~~~ 194 (345)
T 1nvm_A 150 KLAEQGKLME---SYGATCIYMA------DS-------GGA---MSMNDIRDRMRAFKAVLKPE 194 (345)
T ss_dssp HHHHHHHHHH---HHTCSEEEEE------CT-------TCC---CCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHH---HCCCCEEEEC------CC-------cCc---cCHHHHHHHHHHHHHhcCCC
Confidence 8888888876 4667766553 34 122 35788899999999988643
|
| >2p0w_A Histone acetyltransferase type B catalytic subuni; HAT1, structural genomics, structural genomics consortium, S transferase; HET: ACO; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.30 E-value=0.76 Score=46.90 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=47.0
Q ss_pred CCeEEEEEEeecC-CC----eEEEEEEE-Eec-CCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHH
Q 008466 448 EGWETFLSYEDTR-QD----ILVGLLRL-RKC-GRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLME 520 (564)
Q Consensus 448 gg~e~fls~~d~~-~~----~lvG~lrl-r~~-~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~ 520 (564)
+.|++|+-|+-.. ++ .++||..+ ++- .+...|.-++. +.|... |||+|+|++|++
T Consensus 180 ~~W~~y~l~ek~~~~~~~~y~~vGy~T~Y~f~~yp~~~R~RISQ--------------~LILPP----yQ~kG~G~~Ll~ 241 (324)
T 2p0w_A 180 ERWHYFLVFEKYNKDGATLFATVGYMTVYNYYVYPDKTRPRVSQ--------------MLILTP----FQGQGHGAQLLE 241 (324)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEEEEEEEEEEETTTEEEEEEEE--------------EEECGG----GTTSSHHHHHHH
T ss_pred CcEEEEEEEEEccCCCCCceEEEEEEEEEEeeecCCcccceeEE--------------EEEcCc----ccccCcHHHHHH
Confidence 5699999988522 11 58998866 221 11112222221 336766 999999999999
Q ss_pred HHHHHHHhcCCCcEEEEe
Q 008466 521 EAERIALGEHRSRKMAVI 538 (564)
Q Consensus 521 ~aE~~A~~~~g~~~i~~~ 538 (564)
..-+.++..-.+.-|+|-
T Consensus 242 ~iy~~~~~~~~v~eiTVE 259 (324)
T 2p0w_A 242 TVHRYYTEFPTVLDITAE 259 (324)
T ss_dssp HHHHHHHTCTTBCCBEES
T ss_pred HHHHHHhcCCCeEEEEEE
Confidence 999999874355566664
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=87.11 E-value=7.5 Score=38.47 Aligned_cols=148 Identities=11% Similarity=0.151 Sum_probs=86.1
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCc------hhhHHHhhhcccCCccc
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTS------ANVEEAVTYSEHGATKC 232 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~------~~l~e~~~~~~~~~~~~ 232 (564)
..+..++.+..++.+.| ...| ++|+.+..-..+.+.++++.+.+..+-.++ .-+++|++.-. +
T Consensus 31 ~~~~~a~~~a~~~v~~G-----AdiIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~~~~v~~aal~a~~-G---- 100 (271)
T 2yci_X 31 KDPRPIQEWARRQAEKG-----AHYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDSTNPDAIEAGLKVHR-G---- 100 (271)
T ss_dssp TCCHHHHHHHHHHHHTT-----CSEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECSCHHHHHHHHHHCC-S----
T ss_pred CCHHHHHHHHHHHHHCC-----CCEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHHhCC-C----
Confidence 34466666666777777 5667 666664444567788888888876432111 11344444310 1
Q ss_pred EEEEEEeeCCCCC--HHHHHHHHHcCCCeEEEcc--CCCCHHHHHhcCCCCC----HHHHHHHHHHHHHcCCc---EEEE
Q 008466 233 IGMTIETRPDYCL--GPHLRQMLSYGCTRLEIGV--QSTYEDVARDTNRGHT----VAAVADCFCLAKDAGFK---VVAH 301 (564)
Q Consensus 233 ~eitiEtrPd~i~--~e~L~~L~~~G~~rvsiGv--QS~~d~vL~~i~Rght----~~~~~~ai~~lr~~G~~---v~~~ 301 (564)
..+--..+... + ++.+...+++|+.-|-+-. |-. ..| .+...+.++.+.++|++ +..|
T Consensus 101 a~iINdvs~~~-d~~~~~~~~~a~~~~~vv~m~~d~~G~----------p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilD 169 (271)
T 2yci_X 101 HAMINSTSADQ-WKMDIFFPMAKKYEAAIIGLTMNEKGV----------PKDANDRSQLAMELVANADAHGIPMTELYID 169 (271)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHHTCEEEEESCBTTBC----------CCSHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCEEEECCCCc-cccHHHHHHHHHcCCCEEEEecCCCCC----------CCCHHHHHHHHHHHHHHHHHCCCCcccEEEe
Confidence 11111122221 2 4566777777776665544 211 123 34456677888899997 8899
Q ss_pred EecCCCCCCHHHHHHHHHHHhcCCCCC
Q 008466 302 MMPDLPNVGVERDLESFREFFESPLFR 328 (564)
Q Consensus 302 lI~GLPget~e~~~~t~~~~~~~~~l~ 328 (564)
-.+|+.|.+.+...++++.+.....+.
T Consensus 170 Pg~gfigk~~~~~~~~l~~l~~~~~~~ 196 (271)
T 2yci_X 170 PLILPVNVAQEHAVEVLETIRQIKLMA 196 (271)
T ss_dssp CCCCCTTTSTHHHHHHHHHHHHHTTSS
T ss_pred cCCCccccCHHHHHHHHHHHHHHHHhC
Confidence 999988888877666666654333343
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=85.35 E-value=6.3 Score=39.23 Aligned_cols=110 Identities=14% Similarity=0.211 Sum_probs=78.0
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHH-hcCCCC--CHHHHHHHHHHHHHcCCcEEEEEe--cCCCC---CCHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVAR-DTNRGH--TVAAVADCFCLAKDAGFKVVAHMM--PDLPN---VGVERDLE 316 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~-~i~Rgh--t~~~~~~ai~~lr~~G~~v~~~lI--~GLPg---et~e~~~~ 316 (564)
+.+.++...++|++.|.+-+ +.++.-.+ .+++.. +.+.+.++++.+++.|+++...++ +|.|. .+++...+
T Consensus 81 n~~~i~~a~~~G~~~V~i~~-~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~ 159 (295)
T 1ydn_A 81 NMKGYEAAAAAHADEIAVFI-SASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVAS 159 (295)
T ss_dssp SHHHHHHHHHTTCSEEEEEE-ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHH
T ss_pred CHHHHHHHHHCCCCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHH
Confidence 47899999999999998865 44554444 445432 446666779999999999886665 55553 36777777
Q ss_pred HHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 317 SFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 317 t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
.++.+. +.++|.|.+-- | -|. .++++..+++..+.+.+|
T Consensus 160 ~~~~~~---~~G~d~i~l~D------t-------~G~---~~P~~~~~lv~~l~~~~~ 198 (295)
T 1ydn_A 160 VTEQLF---SLGCHEVSLGD------T-------IGR---GTPDTVAAMLDAVLAIAP 198 (295)
T ss_dssp HHHHHH---HHTCSEEEEEE------T-------TSC---CCHHHHHHHHHHHHTTSC
T ss_pred HHHHHH---hcCCCEEEecC------C-------CCC---cCHHHHHHHHHHHHHhCC
Confidence 777776 46789887762 1 121 568888899988888775
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=85.26 E-value=32 Score=34.87 Aligned_cols=118 Identities=11% Similarity=0.089 Sum_probs=81.8
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEec---CCC
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMP---DLP 307 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~---GLP 307 (564)
..+..-++-. ..++...++|++.|.+-+-+.+-...+.+|+. ...+.+.++++.+++.|+++.++++. + +
T Consensus 90 ~~i~~l~~~~----~~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~-~ 164 (337)
T 3ble_A 90 IEILGFVDGN----KTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNG-F 164 (337)
T ss_dssp EEEEEESSTT----HHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHH-H
T ss_pred CeEEEEccch----hhHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-C
Confidence 4555544432 27899999999999997755544566677763 23467778889999999999888775 2 1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
--+++.+.+.++.+. +.+++.|.+- .| -| ..++++..+++..+.+.+|
T Consensus 165 ~~~~~~~~~~~~~~~---~~Ga~~i~l~------DT-------~G---~~~P~~v~~lv~~l~~~~p 212 (337)
T 3ble_A 165 RNSPDYVKSLVEHLS---KEHIERIFLP------DT-------LG---VLSPEETFQGVDSLIQKYP 212 (337)
T ss_dssp HHCHHHHHHHHHHHH---TSCCSEEEEE------CT-------TC---CCCHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHH---HcCCCEEEEe------cC-------CC---CcCHHHHHHHHHHHHHhcC
Confidence 234666677777776 5778877653 23 12 2568888888888888885
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=84.97 E-value=13 Score=37.03 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=82.9
Q ss_pred cchHHHHHHHHHHHHHcCCCCCcEEEE-EEc-CC-CCCC---CHHHHHH---HHHHHHHHhcCCCc------hhhHHHhh
Q 008466 159 YNPYVQARSRIDQLKRLGHSVDKVEFI-LMG-GT-FMSL---PADYRDY---FIRNLHDALSGHTS------ANVEEAVT 223 (564)
Q Consensus 159 ~~~y~~~l~r~~~l~~~g~~~~kve~I-~~G-GT-pt~l---~~~~l~~---ll~~l~~~~~~~~~------~~l~e~~~ 223 (564)
+.....++.+..++.+.| ...| ++| +| |.+- +.+.+++ +++.+.+.++-.++ .-.++|++
T Consensus 34 ~~~~~~a~~~a~~~v~~G-----AdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piSIDT~~~~va~aAl~ 108 (282)
T 1aj0_A 34 HNSLIDAVKHANLMINAG-----ATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTSKPEVIRESAK 108 (282)
T ss_dssp CTHHHHHHHHHHHHHHHT-----CSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCC-----CCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEEEeCCCHHHHHHHHH
Confidence 445667777777788888 5667 555 44 3321 1444444 44444443321111 12344444
Q ss_pred hcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC---C-----HHHHHHHHHHHHHcC
Q 008466 224 YSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH---T-----VAAVADCFCLAKDAG 295 (564)
Q Consensus 224 ~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh---t-----~~~~~~ai~~lr~~G 295 (564)
.. ..+--..+-. .+++.+...+++|+--|-+-.+.... .+...- + .+...+.++.+.++|
T Consensus 109 aG-------a~iINdvsg~-~d~~~~~~~a~~~~~vVlmh~~G~p~----tm~~~~~y~d~~~ev~~~l~~~i~~a~~~G 176 (282)
T 1aj0_A 109 VG-------AHIINDIRSL-SEPGALEAAAETGLPVCLMHMQGNPK----TMQEAPKYDDVFAEVNRYFIEQIARCEQAG 176 (282)
T ss_dssp TT-------CCEEEETTTT-CSTTHHHHHHHHTCCEEEECCSSCTT----CCSCCCCCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred cC-------CCEEEECCCC-CCHHHHHHHHHhCCeEEEEccCCCCc----cccccCccchHHHHHHHHHHHHHHHHHHcC
Confidence 31 1111112222 34567778888887777665542221 111110 1 466677888899999
Q ss_pred Cc---EEEEEecCCCCCCHHHHHHHHHHHhc
Q 008466 296 FK---VVAHMMPDLPNVGVERDLESFREFFE 323 (564)
Q Consensus 296 ~~---v~~~lI~GLPget~e~~~~t~~~~~~ 323 (564)
++ +..|--+|+ +.+.+..++.++.+-+
T Consensus 177 i~~~~IilDPg~gf-~k~~~~n~~ll~~l~~ 206 (282)
T 1aj0_A 177 IAKEKLLLDPGFGF-GKNLSHNYSLLARLAE 206 (282)
T ss_dssp CCGGGEEEECCTTS-SCCHHHHHHHHHTGGG
T ss_pred CChhhEEEeCCCCc-ccCHHHHHHHHHHHHH
Confidence 96 889988888 8888888888877754
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=84.08 E-value=11 Score=36.82 Aligned_cols=106 Identities=13% Similarity=0.149 Sum_probs=70.1
Q ss_pred EEcCCC---CCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcCCCeEE
Q 008466 186 LMGGTF---MSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYGCTRLE 261 (564)
Q Consensus 186 ~~GGTp---t~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G~~rvs 261 (564)
+|.|.| .++.+. +++.|++..+. ....+-+-+ +| ...++.+.++|++.|.
T Consensus 61 VmDg~FVpnit~G~~----~v~~lr~~~p~------------------~~ldvHLmv~~p----~~~i~~~~~aGAd~it 114 (246)
T 3inp_A 61 VMDNHYVPNLTFGPM----VLKALRDYGIT------------------AGMDVHLMVKPV----DALIESFAKAGATSIV 114 (246)
T ss_dssp EEBSSSSSCBCCCHH----HHHHHHHHTCC------------------SCEEEEEECSSC----HHHHHHHHHHTCSEEE
T ss_pred ecCCCcCcchhcCHH----HHHHHHHhCCC------------------CeEEEEEeeCCH----HHHHHHHHHcCCCEEE
Confidence 788887 455664 46666666521 112333332 55 4689999999999999
Q ss_pred EccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC
Q 008466 262 IGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIR 341 (564)
Q Consensus 262 iGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~ 341 (564)
+..++.+ +..++++.+|++|.++.+.+-++-|-+..+ .+++ .+|.|-+ ..+.|
T Consensus 115 vH~Ea~~--------------~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~-------~~l~----~vD~Vlv--MsV~P 167 (246)
T 3inp_A 115 FHPEASE--------------HIDRSLQLIKSFGIQAGLALNPATGIDCLK-------YVES----NIDRVLI--MSVNP 167 (246)
T ss_dssp ECGGGCS--------------CHHHHHHHHHTTTSEEEEEECTTCCSGGGT-------TTGG----GCSEEEE--ECSCT
T ss_pred Eccccch--------------hHHHHHHHHHHcCCeEEEEecCCCCHHHHH-------HHHh----cCCEEEE--eeecC
Confidence 9998862 245677888999999999888777765443 3331 2676544 46778
Q ss_pred CCh
Q 008466 342 GTG 344 (564)
Q Consensus 342 GT~ 344 (564)
|+.
T Consensus 168 Gfg 170 (246)
T 3inp_A 168 GFG 170 (246)
T ss_dssp TC-
T ss_pred CCC
Confidence 863
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=82.27 E-value=3.7 Score=40.64 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=69.6
Q ss_pred eeCCCC-CHHHHHHHHHcCCCeEEEc------------cCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 239 TRPDYC-LGPHLRQMLSYGCTRLEIG------------VQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 239 trPd~i-~~e~L~~L~~~G~~rvsiG------------vQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
..|+.- +.+.+..|.++|++.|+|| +|..+ .+.+..|.|.+++.+.++.+|+.+.++-.++|.=
T Consensus 27 GdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~---~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y 103 (267)
T 3vnd_A 27 GDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGAN---LRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLY 103 (267)
T ss_dssp TSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHH---HHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHH---HHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 466522 5788899999999999999 44443 3455689999999999999998644433445411
Q ss_pred -CC--CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCC
Q 008466 306 -LP--NVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRY 354 (564)
Q Consensus 306 -LP--get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~ 354 (564)
-| .-..+.+.+.+.+ .+.|.+-+.-+.+.+-.++.+..++..+
T Consensus 104 ~npv~~~g~e~f~~~~~~------aGvdgvii~Dlp~ee~~~~~~~~~~~gl 149 (267)
T 3vnd_A 104 ANLVFANGIDEFYTKAQA------AGVDSVLIADVPVEESAPFSKAAKAHGI 149 (267)
T ss_dssp HHHHHHHCHHHHHHHHHH------HTCCEEEETTSCGGGCHHHHHHHHHTTC
T ss_pred CcHHHHhhHHHHHHHHHH------cCCCEEEeCCCCHhhHHHHHHHHHHcCC
Confidence 11 0123555555544 4689988876666665556665555433
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=81.86 E-value=43 Score=33.22 Aligned_cols=119 Identities=11% Similarity=0.001 Sum_probs=76.2
Q ss_pred EEEEEEeeCCCCCHHHHHHH----HHcCCCeEEEccCCCCHH-HHHhcCCCC--CHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 233 IGMTIETRPDYCLGPHLRQM----LSYGCTRLEIGVQSTYED-VARDTNRGH--TVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L----~~~G~~rvsiGvQS~~d~-vL~~i~Rgh--t~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
..++.-++.. .+.++.. +.+|+.+|.+-+ |.+|- ..+.+|+.. ..+.+.++++.+++.|..+.+.+..+
T Consensus 69 ~~i~~l~~~~---~~di~~a~~~~~~ag~~~v~i~~-~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~ 144 (293)
T 3ewb_X 69 CSVTGLARCV---EGDIDRAEEALKDAVSPQIHIFL-ATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDA 144 (293)
T ss_dssp SEEEEEEESS---HHHHHHHHHHHTTCSSEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETG
T ss_pred CEEEEEecCC---HHHHHHHHHHHhhcCCCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccC
Confidence 3455555532 3334443 447999998876 55554 344555432 33556778888999999988777654
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 306 LPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 306 LPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+--+++.+.+.++.+. +.+++.|.+- .|- | ..++++..+++..+.+.+|.
T Consensus 145 -~~~~~~~~~~~~~~~~---~~G~~~i~l~------DT~-------G---~~~P~~v~~lv~~l~~~~~~ 194 (293)
T 3ewb_X 145 -TRSDRAFLIEAVQTAI---DAGATVINIP------DTV-------G---YTNPTEFGQLFQDLRREIKQ 194 (293)
T ss_dssp -GGSCHHHHHHHHHHHH---HTTCCEEEEE------CSS-------S---CCCHHHHHHHHHHHHHHCTT
T ss_pred -CCCCHHHHHHHHHHHH---HcCCCEEEec------CCC-------C---CCCHHHHHHHHHHHHHhcCC
Confidence 2356777778888776 4678876553 331 1 25678888888888888873
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=81.77 E-value=25 Score=35.58 Aligned_cols=120 Identities=13% Similarity=0.039 Sum_probs=76.9
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHc----CCCeEEEccCCCCHHHHHhcCC--CCCHHHHHHHHHHHHHcCCcEEEEEecCC
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSY----GCTRLEIGVQSTYEDVARDTNR--GHTVAAVADCFCLAKDAGFKVVAHMMPDL 306 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~----G~~rvsiGvQS~~d~vL~~i~R--ght~~~~~~ai~~lr~~G~~v~~~lI~GL 306 (564)
..++.-+|+. .+.++.-.++ |+.+|.+-+=+.+-...+.+|+ ....+.+.++++.+++.|..+.++...+-
T Consensus 70 ~~i~~l~r~~---~~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~ 146 (325)
T 3eeg_A 70 PTICALTRAK---EADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAG 146 (325)
T ss_dssp SEEEEECCSC---HHHHHHHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGG
T ss_pred CEEEEeecCC---HHHHHHHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 3455555543 4455544455 9999888664433333445554 34668888999999999999877766554
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 307 PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
--+++.+.+.++.+. +.+++.|.+ +.|- | ..++++..+++..+++.+|.
T Consensus 147 -~~~~~~~~~~~~~~~---~~G~~~i~l------~DT~-------G---~~~P~~v~~lv~~l~~~~~~ 195 (325)
T 3eeg_A 147 -RADQAFLARMVEAVI---EAGADVVNI------PDTT-------G---YMLPWQYGERIKYLMDNVSN 195 (325)
T ss_dssp -GSCHHHHHHHHHHHH---HHTCSEEEC------CBSS-------S---CCCHHHHHHHHHHHHHHCSC
T ss_pred -cchHHHHHHHHHHHH---hcCCCEEEe------cCcc-------C---CcCHHHHHHHHHHHHHhCCC
Confidence 346777778887776 356776543 3331 2 25678888888888888873
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=81.53 E-value=33 Score=34.36 Aligned_cols=147 Identities=15% Similarity=0.180 Sum_probs=81.9
Q ss_pred cchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCC------CCCHHHHHHHH---HHHHHHhcCCCc------hhhHHHhh
Q 008466 159 YNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFM------SLPADYRDYFI---RNLHDALSGHTS------ANVEEAVT 223 (564)
Q Consensus 159 ~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt------~l~~~~l~~ll---~~l~~~~~~~~~------~~l~e~~~ 223 (564)
+.....++.+..++.+.| ...|=.||..| .-+.+.+++++ +.+.+.++-.++ .-+++|++
T Consensus 59 ~~~~~~a~~~a~~~v~~G-----AdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpiSIDT~~~~V~~aAl~ 133 (297)
T 1tx2_A 59 YNEVDAAVRHAKEMRDEG-----AHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIE 133 (297)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-----CCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHH
Confidence 445566777777777777 55663343222 22355666555 555554331111 12444444
Q ss_pred hcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCH--HHHHhcCCCCCHHHHHHHHHHHHHcCCc---E
Q 008466 224 YSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYE--DVARDTNRGHTVAAVADCFCLAKDAGFK---V 298 (564)
Q Consensus 224 ~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d--~vL~~i~Rght~~~~~~ai~~lr~~G~~---v 298 (564)
.. ..+--..+....+++.+...+++|+--|-+-.|-... ++...+ .+...+.++.+.++|++ +
T Consensus 134 aG-------a~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev-----~~~l~~~i~~a~~~GI~~~~I 201 (297)
T 1tx2_A 134 AG-------AHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADM-----IADLYDSIKIAKDAGVRDENI 201 (297)
T ss_dssp HT-------CCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHH-----HHHHHHHHHHHHHTTCCGGGE
T ss_pred cC-------CCEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHH-----HHHHHHHHHHHHHcCCChhcE
Confidence 31 1111122222224567777777777666665442211 111110 24566788889999997 8
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHhc
Q 008466 299 VAHMMPDLPNVGVERDLESFREFFE 323 (564)
Q Consensus 299 ~~~lI~GLPget~e~~~~t~~~~~~ 323 (564)
..|--+|+ +.+.+...+.++.+.+
T Consensus 202 ilDPg~Gf-gk~~~~n~~ll~~l~~ 225 (297)
T 1tx2_A 202 ILDPGIGF-AKTPEQNLEAMRNLEQ 225 (297)
T ss_dssp EEECCTTS-SCCHHHHHHHHHTGGG
T ss_pred EEeCCCCc-CCCHHHHHHHHHHHHH
Confidence 88987777 8899887777777654
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=81.15 E-value=22 Score=38.75 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=74.0
Q ss_pred CCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEE--ecCCCCCCHHHHHHHH
Q 008466 241 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHM--MPDLPNVGVERDLESF 318 (564)
Q Consensus 241 Pd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~l--I~GLPget~e~~~~t~ 318 (564)
||.+.+..++...++|++.|.|-. +.++- +.+.++++.+++.|..+...+ ..|- .-+++..++.+
T Consensus 115 pddv~~~~ve~a~~aGvd~vrIf~-s~sd~-----------~ni~~~i~~ak~~G~~v~~~i~~~~~~-~~~~e~~~~~a 181 (539)
T 1rqb_A 115 NDEVVDRFVDKSAENGMDVFRVFD-AMNDP-----------RNMAHAMAAVKKAGKHAQGTICYTISP-VHTVEGYVKLA 181 (539)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECC-TTCCT-----------HHHHHHHHHHHHTTCEEEEEEECCCST-TCCHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCEEEEEE-ehhHH-----------HHHHHHHHHHHHCCCeEEEEEEeeeCC-CCCHHHHHHHH
Confidence 455667889999999999888854 33332 567899999999999886444 5564 45788888999
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
+.+.+ .+++.|.+-- | .| ...+.+..+++..+.+.+|
T Consensus 182 ~~l~~---~Gad~I~L~D------T-------~G---~~~P~~v~~lv~~l~~~~p 218 (539)
T 1rqb_A 182 GQLLD---MGADSIALKD------M-------AA---LLKPQPAYDIIKAIKDTYG 218 (539)
T ss_dssp HHHHH---TTCSEEEEEE------T-------TC---CCCHHHHHHHHHHHHHHHC
T ss_pred HHHHH---cCCCEEEeCC------C-------CC---CcCHHHHHHHHHHHHHhcC
Confidence 88874 5778665532 2 12 2457888888888888776
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=80.82 E-value=9.9 Score=38.25 Aligned_cols=110 Identities=20% Similarity=0.233 Sum_probs=78.6
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHH-HHHhcCCCC--CHHHHHHHHHHHHHcCCcEEEEEec--CCCC---CCHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYED-VARDTNRGH--TVAAVADCFCLAKDAGFKVVAHMMP--DLPN---VGVERDLE 316 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~-vL~~i~Rgh--t~~~~~~ai~~lr~~G~~v~~~lI~--GLPg---et~e~~~~ 316 (564)
+.+.++...++|++.|.+-+ |.++- ..+.+|+.. ..+.+.++++.+++.|+.+...++. |.|. -+++.+.+
T Consensus 83 ~~~~i~~a~~~g~~~v~i~~-~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~ 161 (307)
T 1ydo_A 83 NQRGLENALEGGINEACVFM-SASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIR 161 (307)
T ss_dssp SHHHHHHHHHHTCSEEEEEE-ESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHH
T ss_pred CHHhHHHHHhCCcCEEEEEe-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHH
Confidence 47789999999999999987 55554 344565532 3456788899999999998877655 4454 35777777
Q ss_pred HHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 317 SFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 317 t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
.++.+. +.+++.|.+- .| -| ..++++..+++..+.+.+|
T Consensus 162 ~~~~~~---~~Ga~~i~l~------DT-------~G---~~~P~~v~~lv~~l~~~~~ 200 (307)
T 1ydo_A 162 LSEALF---EFGISELSLG------DT-------IG---AANPAQVETVLEALLARFP 200 (307)
T ss_dssp HHHHHH---HHTCSCEEEE------CS-------SC---CCCHHHHHHHHHHHHTTSC
T ss_pred HHHHHH---hcCCCEEEEc------CC-------CC---CcCHHHHHHHHHHHHHhCC
Confidence 777776 4678877664 33 12 2568888888888888775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 564 | |||
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 100.0 | |
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 99.76 | |
| d2jdca1 | 145 | Probable acetyltransferase YitI {Bacillus lichenif | 99.4 | |
| d2fiwa1 | 156 | Probable N-acetyltransferase RPA1999 {Rhodopseudom | 99.28 | |
| d1q2ya_ | 140 | Probable acetyltransferase YjcF {Bacillus subtilis | 99.28 | |
| d1vkca_ | 149 | Putative acetyltransferase PF0028 {Pyrococcus furi | 99.28 | |
| d1y9wa1 | 140 | Probable acetyltransferase BC2806 {Bacillus cereus | 99.26 | |
| d1xeba_ | 149 | Hypothetical protein PA0115 {Pseudomonas aeruginos | 99.26 | |
| d1i12a_ | 157 | Glucosamine-phosphate N-acetyltransferase GNA1 {Ba | 99.24 | |
| d1ghea_ | 170 | Tabtoxin resistance protein {Pseudomonas syringae | 99.2 | |
| d1yx0a1 | 151 | Hypothetical protein YsnE {Bacillus subtilis [TaxI | 99.18 | |
| d1n71a_ | 180 | Aminoglycoside 6'-N-acetyltransferase {Enterococcu | 99.18 | |
| d2g3aa1 | 137 | Probable acetyltransferase Atu2258 {Agrobacterium | 99.15 | |
| d1y7ra1 | 133 | Hypothetical protein SA2161 {Staphylococcus aureus | 99.13 | |
| d1ufha_ | 155 | Putative acetyltransferase YycN {Bacillus subtilis | 99.12 | |
| d1s3za_ | 147 | Aminoglycoside N-acetyltransferase AAC(6')-IY {Sal | 99.09 | |
| d1tiqa_ | 173 | Protease synthase and sporulation negative regulat | 99.08 | |
| d1yvka1 | 152 | Hypothetical protein YvbK (BSu33890) {Bacillus sub | 99.06 | |
| d1qsra_ | 162 | Catalytic domain of GCN5 histone acetyltransferase | 99.06 | |
| d1y9ka1 | 152 | IAA acetyltransferase {Bacillus cereus [TaxId: 139 | 99.05 | |
| d2atra1 | 137 | Probable acetyltransferase SP0256 {Streptococcus p | 99.03 | |
| d2fe7a1 | 156 | Probable N-acetyltransferase PA0478 {Pseudomonas a | 99.02 | |
| d2fiaa1 | 157 | Probable acetyltransferase EF1919 {Enterococcus fa | 99.01 | |
| d1z4ra1 | 162 | Catalytic domain of GCN5 histone acetyltransferase | 99.01 | |
| d1z4ea1 | 150 | Transcriptional regulator BH1968 {Bacillus halodur | 99.0 | |
| d2gana1 | 182 | Hypothetical protein PH0736 {Pyrococcus horikoshii | 99.0 | |
| d1yr0a1 | 163 | Phosphinothricin acetyltransferase {Agrobacterium | 98.97 | |
| d1cjwa_ | 166 | Serotonin N-acetyltranferase {Sheep (Ovis aries) [ | 98.96 | |
| d1u6ma_ | 189 | Putative acetyltransferase EF0945 {Enterococcus fa | 98.91 | |
| d2ae6a1 | 161 | Putative acetyltransferase EF0244 {Enterococcus fa | 98.9 | |
| d1mk4a_ | 157 | Hypothetical protein YqiY {Bacillus subtilis [TaxI | 98.9 | |
| d2fl4a1 | 146 | Probable spermine/spermidine acetyltransferase EF1 | 98.87 | |
| d1wwza1 | 157 | Hypothetical protein PH1933 {Pyrococcus horikoshii | 98.86 | |
| d1vhsa_ | 165 | Putative phosphinothricin acetyltransferase YwnH { | 98.84 | |
| d1qsma_ | 150 | Histone acetyltransferase HPA2 {Baker's yeast (Sac | 98.84 | |
| d1yvoa1 | 169 | Hypothetical protein PA4866 {Pseudomonas aeruginos | 98.84 | |
| d2ge3a1 | 164 | Probable acetyltransferase Atu2290 {Agrobacterium | 98.84 | |
| d2euia1 | 153 | Probable acetyltransferase PA4026 {Pseudomonas aer | 98.83 | |
| d1ygha_ | 164 | Catalytic domain of GCN5 histone acetyltransferase | 98.82 | |
| d2i6ca1 | 160 | Putative acetyltransferase PA4794 {Pseudomonas aer | 98.78 | |
| d1bo4a_ | 137 | Aminoglycoside 3-N-acetyltransferase {Serratia mar | 98.7 | |
| d2b5ga1 | 167 | Diamine acetyltransferase 1 {Human (Homo sapiens) | 98.69 | |
| d2cy2a1 | 174 | Probable acetyltransferase TTHA1209 {Thermus therm | 98.69 | |
| d1m4ia_ | 181 | Aminoglycoside 2'-N-acetyltransferase {Mycobacteri | 98.65 | |
| d2aj6a1 | 118 | Hypothetical protein MW0638 {Staphylococcus aureus | 98.47 | |
| d2beia1 | 167 | Diamine acetyltransferase 2 {Human (Homo sapiens) | 98.43 | |
| d1tv8a_ | 327 | Molybdenum cofactor biosynthesis protein A MoaA {S | 98.29 | |
| d1p0ha_ | 308 | Mycothiol synthase MshD {Mycobacterium tuberculosi | 98.27 | |
| d1s7ka1 | 174 | L7/L12-Ribosomal-protein-serine acetyltransferase | 98.17 | |
| d2hv2a2 | 285 | Hypothetical protein EF1021 {Enterococcus faecalis | 98.16 | |
| d1nsla_ | 180 | Probable acetyltransferase YdaF {Bacillus subtilis | 98.13 | |
| d2fcka1 | 178 | Putative ribosomal-protein-serine acetyltransferas | 98.11 | |
| d1r57a_ | 102 | Hypothetical protein SA2309 {Staphylococcus aureus | 98.07 | |
| d2i00a2 | 291 | Putative acetyltransferase EF2353 {Enterococcus fa | 98.06 | |
| d1yk3a1 | 198 | Hypothetical protein Rv1347c/MT1389 {Mycobacterium | 97.98 | |
| d2ozga2 | 283 | Putative acetyltransferase Ava4977 {Anabaena varia | 97.97 | |
| d1sqha_ | 297 | Hypothetical protein cg14615-pa {Fruit fly (Drosop | 97.78 | |
| d1yrea1 | 183 | Hypothetical protein PA3270 {Pseudomonas aeruginos | 97.76 | |
| d2fsra1 | 164 | Probable acetyltranferase Atu2435 {Agrobacterium t | 97.39 | |
| d1ro5a_ | 197 | Autoinducer synthesis protein LasI {Pseudomonas ae | 96.4 | |
| d1p0ha_ | 308 | Mycothiol synthase MshD {Mycobacterium tuberculosi | 96.2 | |
| d1xmta_ | 95 | Hypothetical protein AT1g77540 {Thale cress (Arabi | 94.74 | |
| d1kzfa_ | 210 | Acyl-homoserinelactone synthase EsaI {Pantoea stew | 88.53 | |
| d1boba_ | 315 | Histone acetyltransferase HAT1 {Baker's yeast (Sac | 87.63 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 82.74 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 81.25 |
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-42 Score=372.04 Aligned_cols=268 Identities=19% Similarity=0.222 Sum_probs=227.7
Q ss_pred CCCCHHHHHHhCChhhHHHhhhHHhcCCCCccCCceeEEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCc
Q 008466 70 RAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEP 149 (564)
Q Consensus 70 ~~p~~~~i~~~~~~~~~~~l~~~l~~kp~rt~sgv~vvavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep 149 (564)
+||...++-..+.... ++..|.+.|-++.| +|+|||||+++|.|| +|. ++....
T Consensus 22 syp~~~~f~~~~~~~~---~~~~l~~~~~~pls------------LYiHiPFC~~~C~yC------~~~----~~~~~~- 75 (441)
T d1olta_ 22 SYPTALEFSEDFGEQA---FLQAVARYPERPLS------------LYVHIPFCHKLCYFC------GCN----KIVTRQ- 75 (441)
T ss_dssp SSSCGGGCBTTCCHHH---HHHHHTTCTTSCEE------------EEEEECEESSCCTTC------CSS----CEECSC-
T ss_pred CCCCcccccCCCCHHH---HHHHHhhCCCCceE------------EEEEeCCCCCCCCCC------cCe----eecCCC-
Confidence 6899888877666553 23455555544443 699999999999999 775 222222
Q ss_pred chHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccC
Q 008466 150 TSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHG 228 (564)
Q Consensus 150 ~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~ 228 (564)
....++|++.+.+|+++........+|.+| |||||||.|+++.+.++++.|.+.++
T Consensus 76 ------~~~~~~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTPt~L~~~~l~~ll~~l~~~~~----------------- 132 (441)
T d1olta_ 76 ------QHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQ----------------- 132 (441)
T ss_dssp ------THHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCHHHHHHHHHHHHHHSC-----------------
T ss_pred ------cchHHHHHHHHHHHHHHhhHhcCCCccceeEecCCCcCCCCHHHHHHHHHHHhhhcc-----------------
Confidence 245688999999999877655556679999 69999999999999999999998876
Q ss_pred CcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCC
Q 008466 229 ATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLP 307 (564)
Q Consensus 229 ~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLP 307 (564)
...+.++|+|++|++++++.|..|+++|||||||||||+|+++|+.|||.|+.+++.++++.++++||. +++|||+|||
T Consensus 133 ~~~~~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R~~~~~~~~~~~~~~r~~g~~~vn~DLI~GlP 212 (441)
T d1olta_ 133 FNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLP 212 (441)
T ss_dssp EEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEESCT
T ss_pred ccchhcccccccccccchHHHHHHHHhCCceEEecchhcchhhhhhhhcCCCHHHHHHHHHHHHhcccceeecccccccC
Confidence 135689999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCC
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIP 387 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip 387 (564)
|||.+++.++++.++ +++||+|++|++.+.|+|..+. ...++...+++++..+++..+.+.
T Consensus 213 gqT~~~~~~tl~~~~---~l~pd~is~y~~~~~p~~~~~q-~~~~~~~lp~~~~~~~~~~~~~~~--------------- 273 (441)
T d1olta_ 213 KQTPESFAFTLKRVA---ELNPDRLSVFNYAHLPTIFAAQ-RKIKDADLPSPQQKLDILQETIAF--------------- 273 (441)
T ss_dssp TCCHHHHHHHHHHHH---HHCCSEEEEEECCCCTTTSGGG-GGSCGGGSCCHHHHHHHHHHHHHH---------------
T ss_pred CcchHHHHHHHHHHH---hhCCCccccccceeccchhHhh-hhccccchhhhHHHHHHHHHHHHH---------------
Confidence 999999999999998 5789999999999999886654 455666678999999998877765
Q ss_pred hhHHHhCCCcchHHHHHHhh
Q 008466 388 MPLVTSGVEKGNLRELALAR 407 (564)
Q Consensus 388 ~~l~~~G~~~~~~~~~a~~~ 407 (564)
|..+|+.++++++||++.
T Consensus 274 --L~~~GY~~~~~~~far~~ 291 (441)
T d1olta_ 274 --LTQSGYQFIGMDHFARPD 291 (441)
T ss_dssp --HHHTTCEEEETTEEECTT
T ss_pred --HHHcCchhhhHHHhhhcc
Confidence 588999999999998653
|
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.5e-17 Score=166.55 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=140.6
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCC--CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEE
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFILMGGTFM--SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTI 237 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt--~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eiti 237 (564)
....+++.+...+.+.|. .+.++.||... ..+.+++.++++.+.+. .+.+
T Consensus 73 ~~~e~i~~~~~~~~~~G~----~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~------------------------~~~~ 124 (312)
T d1r30a_ 73 MEVEQVLESARKAKAAGS----TRFCMGAAWKNPHERDMPYLEQMVQGVKAM------------------------GLEA 124 (312)
T ss_dssp CCHHHHHHHHHHHHHTTC----SEEEEEECCSSCCTTTHHHHHHHHHHHHHT------------------------TSEE
T ss_pred cchHHHHHHHHHHHHcCC----EEEEEccCCCCCchhhHHHHHHHHHhcccc------------------------ccee
Confidence 345566666666777773 23345555444 23445554444443321 1345
Q ss_pred EeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHH
Q 008466 238 ETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLES 317 (564)
Q Consensus 238 EtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t 317 (564)
.+++..++++.++.|+++|++++.+|++|. ++.+..+.++++.++..++++.++++|+++.+++|+|+ |||.++..+.
T Consensus 125 ~~~~~~l~~e~l~~lk~aG~~~i~~~iEs~-~~~~~~~~~~~~~~~~~~~~~~a~~~Gi~~~~~~i~G~-~et~~d~~~~ 202 (312)
T d1r30a_ 125 CMTLGTLSESQAQRLANAGLDYYNHNLDTS-PEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL-GETVKDRAGL 202 (312)
T ss_dssp EEECSSCCHHHHHHHHHHCCCEEECCCBSC-HHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECS-SCCHHHHHHH
T ss_pred eeccccchHHHHHHhhcccceeEecccchh-hhhhccCCCCCCHHHHHHHHHHHHHhccceecceEecC-cCcHHHHHHH
Confidence 556778899999999999999999999994 66888899999999999999999999999999999999 6899999999
Q ss_pred HHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 318 FREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 318 ~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
+..+.+. ..+++.+.++++.|.|||+|+. ..+++.++.+.+++.+.-.+|..
T Consensus 203 l~~l~~l-~~~~~~i~~~~~~p~~gT~l~~------~~~~~~~e~l~~iA~~Rl~lp~~ 254 (312)
T d1r30a_ 203 LLQLANL-PTPPESVPINMLVKVKGTPLAD------NDDVDAFDFIRTIAVARIMMPTS 254 (312)
T ss_dssp HHHHHSS-SSCCSEEEEEECCCCTTSTTSS------CCCCCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhc-CCCCCeeeeccccCCCCccccc------ccCCCHHHHHHHHHHHHHhCCCc
Confidence 9887643 4567899999999999999864 35789999999999999999864
|
| >d2jdca1 d.108.1.1 (A:2-146) Probable acetyltransferase YitI {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable acetyltransferase YitI species: Bacillus licheniformis [TaxId: 1402]
Probab=99.40 E-value=5.4e-13 Score=120.19 Aligned_cols=98 Identities=21% Similarity=0.312 Sum_probs=75.5
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCC-ccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMG-KCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIA 526 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~-~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A 526 (564)
.++-||++|++ +.+||+.++....... ... ... +++ -+.|+++ |||+|||++||++++++|
T Consensus 36 ~~~~h~~a~~~---~~iVg~~~~~~~~~~~----~~~~~~~---~l~----~l~V~~~----~rg~GiG~~Ll~~~~~~a 97 (145)
T d2jdca1 36 RGAFHLGGYYG---GKLISIASFHQAEHSE----LQGQKQY---QLR----GMATLEG----YREQKAGSSLIKHAEEIL 97 (145)
T ss_dssp TTCEEEEEEET---TEEEEEEEEEECCCTT----SCCSSEE---EEE----EEEECTT----STTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeC---CEEEEEEEEEeccccc----cCCCCeE---EEE----EEEEeHH----HhhhhHHHHHHHHHHHHH
Confidence 34678999987 8999999988653111 111 111 122 1347877 999999999999999999
Q ss_pred HhcCCCcEEEEecCCCcHHHHhhCCCeeeCc-----------eEeeecC
Q 008466 527 LGEHRSRKMAVISGVGTRHYYRKLGYELEGP-----------YMVKYLE 564 (564)
Q Consensus 527 ~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~-----------~m~K~l~ 564 (564)
++ +|++.|.+.++..|.+||+|+||+..|. .|.|.|.
T Consensus 98 ~~-~g~~~i~l~a~~~A~~fY~k~GF~~~g~~f~~~~ig~h~~M~k~ls 145 (145)
T d2jdca1 98 RK-RGADLLWCNARTSASGYYKKLGFSEQGEVFDTPPVGPHILMYKRIT 145 (145)
T ss_dssp HH-TTCCEEEEEEEGGGHHHHHHTTCEEEEEEEECTTSCEEEEEEEECC
T ss_pred HH-cCCCEEEEeccchHHHHHHHCCCEEeCcEeccCCCcccEEEEEECC
Confidence 99 5999999999999999999999999773 6777763
|
| >d2fiwa1 d.108.1.1 (A:2-157) Probable N-acetyltransferase RPA1999 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable N-acetyltransferase RPA1999 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=99.28 E-value=7.4e-12 Score=113.30 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=65.0
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
...|++..| +.+|||+.+... . ++| +| |++. |||||||++||++++++|++
T Consensus 58 ~~~~va~~~---~~ivG~~~~~~~-------------~---~i~~l~-----V~p~----~~g~GiG~~Ll~~~~~~a~~ 109 (156)
T d2fiwa1 58 QLTLIATLQ---GVPVGFASLKGP-------------D---HIDMLY-----VHPD----YVGRDVGTTLIDALEKLAGA 109 (156)
T ss_dssp SEEEEEEET---TEEEEEEEEETT-------------T---EEEEEE-----ECGG----GCSSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEC---CEEEEEEeeccc-------------h---hHHHHh-----ccHH----HcCCCHHHHHHHHHHHHHHh
Confidence 356888876 899999988621 1 233 44 7776 99999999999999999999
Q ss_pred cCCCcEEEEecCCCcHHHHhhCCCeeeC
Q 008466 529 EHRSRKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 529 ~~g~~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
+|+..|.+.++..|++||+|+||+..+
T Consensus 110 -~g~~~l~~~~~~~A~~fY~k~GF~~~~ 136 (156)
T d2fiwa1 110 -RGALILTVDASDNAAEFFAKRGYVAKQ 136 (156)
T ss_dssp -TTCSEEEEEECTTTHHHHHTTTCEEEE
T ss_pred -cCCCEEEEEeccchhHHHHhCCCEEEE
Confidence 599999999999999999999998765
|
| >d1q2ya_ d.108.1.1 (A:) Probable acetyltransferase YjcF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable acetyltransferase YjcF species: Bacillus subtilis [TaxId: 1423]
Probab=99.28 E-value=6e-12 Score=112.55 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=69.4
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..||+++.+ +.+||+++++... +.+ +-.-+.|.++ |||+|+|++||++++++|++
T Consensus 42 ~~h~v~~~~---~~~vg~~~~~~~~----------~~~-------~i~~l~V~~~----~rg~GiG~~Ll~~~~~~a~~- 96 (140)
T d1q2ya_ 42 SEHIVVYDG---EKPVGAGRWRMKD----------GYG-------KLERICVLKS----HRSAGVGGIIMKALEKAAAD- 96 (140)
T ss_dssp SEEEEEEET---TEEEEEEEEEEET----------TEE-------EEEEEECCGG----GTTTTHHHHHHHHHHHHHHH-
T ss_pred cEEEEEecc---ccEEEEEeeeccc----------cee-------eEeeeEEchh----hcCCcHHHHHHHHHHHHHHH-
Confidence 568999987 8899999998654 111 1122347776 99999999999999999999
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.|+++|.+.++..|.+||+|+||+..|.
T Consensus 97 ~g~~~i~l~a~~~a~~fY~k~GF~~~~~ 124 (140)
T d1q2ya_ 97 GGASGFILNAQTQAVPFYKKHGYRVLSE 124 (140)
T ss_dssp TTCCSEEEEEEGGGHHHHHHTTCEESCS
T ss_pred cCCCceEEeCCHHHHHHHHHCcCEEcCC
Confidence 5999999999999999999999999873
|
| >d1vkca_ d.108.1.1 (A:) Putative acetyltransferase PF0028 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Putative acetyltransferase PF0028 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.28 E-value=3.6e-12 Score=114.20 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=73.0
Q ss_pred eCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHH
Q 008466 446 ANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERI 525 (564)
Q Consensus 446 a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~ 525 (564)
.++..-+|++..+ ++.+|||+.+....+..+ -.-++|-..+.|+++ |||+|+|++||+++++|
T Consensus 48 ~~~~~~~~v~~~~--~g~ivG~~~~~~~~~~~~-----------~~~~~~i~~l~V~~~----~Rg~GiG~~Ll~~~~~~ 110 (149)
T d1vkca_ 48 SQGEHKFFVALNE--RSELLGHVWICITLDTVD-----------YVKIAYIYDIEVVKW----ARGLGIGSALLRKAEEW 110 (149)
T ss_dssp HSSEEEEEEEEET--TCCEEEEEEEEEEECTTT-----------CSEEEEEEEEEECGG----GTTSSHHHHHHHHHHHH
T ss_pred hCCCceEEEEEec--CCeEEEEEEEEeccCCCC-----------CCcEEEEEEEEECHH----HcCCChHHHHHHHHHHH
Confidence 3444556776653 468899998864421100 011223233447877 99999999999999999
Q ss_pred HHhcCCCcEEEEe--cCCCcHHHHhhCCCeeeCceEeeec
Q 008466 526 ALGEHRSRKMAVI--SGVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 526 A~~~~g~~~i~~~--s~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
|++ +|+++|.+. ++..|.+||+|+||+..+..|.|.|
T Consensus 111 a~~-~g~~~i~L~v~~~n~A~~~Y~k~GF~~~~~~m~k~i 149 (149)
T d1vkca_ 111 AKE-RGAKKIVLRVEIDNPAVKWYEERGYKARALIMEKPI 149 (149)
T ss_dssp HHH-TTCSCEEECCCTTCTHHHHHHHTTCCCCCCCCCCCC
T ss_pred HHH-CCCCEEEEEECCCCHHHHHHHHCCCEEEEEEEEEEC
Confidence 999 699999876 3447999999999999999999875
|
| >d1y9wa1 d.108.1.1 (A:1-140) Probable acetyltransferase BC2806 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable acetyltransferase BC2806 species: Bacillus cereus [TaxId: 1396]
Probab=99.26 E-value=1.2e-11 Score=109.89 Aligned_cols=81 Identities=25% Similarity=0.312 Sum_probs=65.5
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEec-
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS- 539 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s- 539 (564)
++.+||++..+... +. .+...+.|+++ |||+|+|++||++++++|++ .|+.+|.+.+
T Consensus 48 ~~~ivG~~~~~~~~----------~~-------~~i~~l~V~~~----~rg~GiG~~Ll~~~~~~a~~-~g~~~i~l~~~ 105 (140)
T d1y9wa1 48 EGKIFGGVTGTMYF----------YH-------LHIDFLWVDES----VRHDGYGSQLLHEIEGIAKE-KGCRLILLDSF 105 (140)
T ss_dssp TCCEEEEEEEEEET----------TE-------EEEEEEEECGG----GTTTTHHHHHHHHHHHHHHH-TTCCEEEEEEE
T ss_pred CCcEEEEEEEEEec----------Ce-------eEEEEEEECcc----ccCCCcHHHHHHHHHHHHHh-ccceEEEEeec
Confidence 47899999988553 11 12222347776 99999999999999999999 5999998775
Q ss_pred CCCcHHHHhhCCCeeeCc-----------eEeeec
Q 008466 540 GVGTRHYYRKLGYELEGP-----------YMVKYL 563 (564)
Q Consensus 540 ~~~a~~fY~klGy~~~g~-----------~m~K~l 563 (564)
+..|..||+|+||+..|+ +|.|.|
T Consensus 106 n~~A~~fY~k~GF~~~g~~~~~~~~~~~~~m~K~L 140 (140)
T d1y9wa1 106 SFQAPEFYKKHGYREYGVVEDHPKGHSQHFFEKRL 140 (140)
T ss_dssp GGGCHHHHHHTTCEEEEEESSCSTTCCEEEEEEEC
T ss_pred hhhHHHHHHhCCCEEEEEECCCCCCCcEEEEEeEC
Confidence 668999999999999874 899987
|
| >d1xeba_ d.108.1.1 (A:) Hypothetical protein PA0115 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein PA0115 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.26 E-value=6.6e-12 Score=113.57 Aligned_cols=88 Identities=20% Similarity=0.196 Sum_probs=68.3
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
.+.|++++.| +.+||++|+..+.... +.. +..-+.|.++ |||+|||++||++++++|++
T Consensus 47 ~s~hl~~~~~---~~~vg~~rl~~~~~~~-------~~~-------~i~rvaV~~~----~Rg~GiG~~L~~~~l~~~~~ 105 (149)
T d1xeba_ 47 DTHHLMAWRD---GQLLAYLRLLDPVRHE-------GQV-------VIGRVVSSSA----ARGQGLGHQLMERALQAAER 105 (149)
T ss_dssp TCEEEEEEET---TEEEEEEEEECSTTTT-------TCE-------EEEEEEECGG----GTTSSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeC---CeEEEEEEEeeccccC-------CcE-------EEEEEEEehh----hhccChhHHHHHHHHHHHHH
Confidence 4788999987 8999999998543110 111 1122347776 99999999999999999998
Q ss_pred cCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+.+...|.++++..|.+||+|+||+..|.
T Consensus 106 ~~~~~~i~l~A~~~a~~FY~k~GF~~~g~ 134 (149)
T d1xeba_ 106 LWLDTPVYLSAQAHLQAYYGRYGFVAVTE 134 (149)
T ss_dssp HHTTCCEEEEEESTTHHHHHTTTEEECSC
T ss_pred hCCCCEEEEeChHHHHHHHHHCCCEECCC
Confidence 52345699999999999999999999883
|
| >d1i12a_ d.108.1.1 (A:) Glucosamine-phosphate N-acetyltransferase GNA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Glucosamine-phosphate N-acetyltransferase GNA1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=8.7e-12 Score=111.52 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=69.7
Q ss_pred EeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEE
Q 008466 456 YEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKM 535 (564)
Q Consensus 456 ~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i 535 (564)
+++..++.+||++.+.......+. .. . +.|...+.|+++ |||+|+|++||++++++|++ +|++.+
T Consensus 65 ~~~~~~~~ivG~~~~~~~~~~~~~------~~--~--~~~i~~l~v~p~----~rg~Gig~~L~~~~~~~a~~-~g~~~i 129 (157)
T d1i12a_ 65 IVDKRTETVAATGNIIIERKIIHE------LG--L--CGHIEDIAVNSK----YQGQGLGKLLIDQLVTIGFD-YGCYKI 129 (157)
T ss_dssp EEETTTTEEEEEEEEEEEECSHHH------HC--E--EEEEEEEEECGG----GTTSSHHHHHHHHHHHHHHH-TTCSEE
T ss_pred EEEEECCEEEEEEEEecccccccc------Cc--c--eeEEEEEEecHh----hcCCCchHHHHHHHHHHHHH-CCCCEE
Confidence 444456899999988755311111 11 1 123233447777 99999999999999999999 599999
Q ss_pred EEecCCCcHHHHhhCCCeeeCceEee
Q 008466 536 AVISGVGTRHYYRKLGYELEGPYMVK 561 (564)
Q Consensus 536 ~~~s~~~a~~fY~klGy~~~g~~m~K 561 (564)
.+.++..+.+||+|+||+..|..|..
T Consensus 130 ~l~~~~~~~~~Y~k~GF~~~g~~m~~ 155 (157)
T d1i12a_ 130 ILDCDEKNVKFYEKCGFSNAGVEMQI 155 (157)
T ss_dssp EEEECGGGHHHHHHTTCEEEEEEEEE
T ss_pred EEEECHHHHHHHHhCCCEEeeEEEEE
Confidence 99999999999999999999998854
|
| >d1ghea_ d.108.1.1 (A:) Tabtoxin resistance protein {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Tabtoxin resistance protein species: Pseudomonas syringae [TaxId: 317]
Probab=99.20 E-value=2.5e-11 Score=111.44 Aligned_cols=87 Identities=23% Similarity=0.400 Sum_probs=67.0
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCC--CCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRN--VTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERI 525 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~--~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~ 525 (564)
++..+++.+++ +.+||++.+...... .++. ++. .+.|++. |||+|+|++||++++++
T Consensus 57 ~~~~~~v~~~~---~~ivG~~~~~~~~~~~~~~~~----------~i~----~l~V~p~----~rg~GiG~~Ll~~~~~~ 115 (170)
T d1ghea_ 57 GSLLLWVVAED---DNVLASAQLSLCQKPNGLNRA----------EVQ----KLMVLPS----ARGRGLGRQLMDEVEQV 115 (170)
T ss_dssp TSEEEEEEEET---TEEEEEEEEEECCSTTCTTEE----------EEE----EEEECGG----GTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEEEC---CEEEEEEEEeeccccCCCcEE----------EEE----EEEEcch----hhcCCcHHHHHHHHHHH
Confidence 45667888776 899999998865411 1221 222 1237776 99999999999999999
Q ss_pred HHhcCCCcEEEE--ecCCCcHHHHhhCCCeeeC
Q 008466 526 ALGEHRSRKMAV--ISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 526 A~~~~g~~~i~~--~s~~~a~~fY~klGy~~~g 556 (564)
|++ +|+.++.+ .+|..|..||+|+||+..|
T Consensus 116 a~~-~g~~~l~L~~~~n~~a~~fY~k~GF~~~g 147 (170)
T d1ghea_ 116 AVK-HKRGLLHLDTEAGSVAEAFYSALAYTRVG 147 (170)
T ss_dssp HHH-TTCCEEEEEEETTSHHHHHHHHTTCEEEE
T ss_pred HHH-cCCceEeeecccchHHHHHHHHCCCEEEE
Confidence 999 59999866 4577899999999999877
|
| >d1yx0a1 d.108.1.1 (A:1-151) Hypothetical protein YsnE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein YsnE species: Bacillus subtilis [TaxId: 1423]
Probab=99.18 E-value=1.3e-11 Score=111.72 Aligned_cols=91 Identities=18% Similarity=0.304 Sum_probs=70.4
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIA 526 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A 526 (564)
....+|+++.+ +.+||++.+.... ++. -+++ +| |+++ |||+|+|++||+.++++|
T Consensus 44 ~~~~~~va~~~---~~~vG~~~~~~~~---------~~~---~~i~~~~-----V~p~----~Rg~Glg~~Ll~~~~~~A 99 (151)
T d1yx0a1 44 PEITFWSAWEG---DELAGCGALKELD---------TRH---GEIKSMR-----TSAS----HLRKGVAKQVLQHIIEEA 99 (151)
T ss_dssp SSCEEEEEECS---SSEEEEEEEEEEE---------TTE---EECCCCC-----CSTT----TCCSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEC---CEEEEEEEEEecc---------Cce---EEEEeee-----eCHH----HHhCChhHHHHHHHHHHH
Confidence 34567788876 8899999987543 111 1233 44 7777 999999999999999999
Q ss_pred HhcCCCcEEEEecC-----CCcHHHHhhCCCeeeCc-----------eEeeec
Q 008466 527 LGEHRSRKMAVISG-----VGTRHYYRKLGYELEGP-----------YMVKYL 563 (564)
Q Consensus 527 ~~~~g~~~i~~~s~-----~~a~~fY~klGy~~~g~-----------~m~K~l 563 (564)
++. |++.+.+.++ ..|++||+|+||+..++ ||.|.|
T Consensus 100 ~~~-g~~~i~L~t~~~~~n~~A~~lY~k~GF~~~~~~~~y~~d~~~~~m~K~L 151 (151)
T d1yx0a1 100 EKR-GYERLSLETGSMASFEPARKLYESFGFQYCEPFADYGEDPNSVFMTKKL 151 (151)
T ss_dssp HHH-TCSCEECCCSSCTTHHHHHHHHHTTSEEECCCCTTSCCCTTCCCEEECC
T ss_pred HHC-CCcEEEEEeccccchHHHHHHHHHcCCEECCccCCCCCCCccEEEEEEC
Confidence 995 9999988542 35899999999998664 788876
|
| >d1n71a_ d.108.1.1 (A:) Aminoglycoside 6'-N-acetyltransferase {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Aminoglycoside 6'-N-acetyltransferase species: Enterococcus faecium [TaxId: 1352]
Probab=99.18 E-value=6.4e-11 Score=109.78 Aligned_cols=91 Identities=22% Similarity=0.265 Sum_probs=70.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+++++ +.+||++.+..... + -.-+++ .+.|++. |||||+|++||+++|++|++
T Consensus 45 ~~~~va~~~---~~iig~~~~~~~~~--------~---~~~~I~----~i~V~p~----~rg~GiG~~Ll~~~~~~a~~- 101 (180)
T d1n71a_ 45 RIAVAAVDQ---DELVGFIGAIPQYG--------I---TGWELH----PLVVESS----RRKNQIGTRLVNYLEKEVAS- 101 (180)
T ss_dssp SEEEEEEET---TEEEEEEEEEEEET--------T---TEEEEE----EEEECTT----SCSSSHHHHHHHHHHHHHHH-
T ss_pred CEEEEEEEC---CeEEEEEEEEEecC--------C---CEEEEE----EEEEchH----HhccHHHHHHHHHHHHHHHH-
Confidence 345666666 88999988765420 1 112333 2348887 99999999999999999999
Q ss_pred CCCcEEEEec----------------------------CCCcHHHHhhCCCeeeCc------------eEeeec
Q 008466 530 HRSRKMAVIS----------------------------GVGTRHYYRKLGYELEGP------------YMVKYL 563 (564)
Q Consensus 530 ~g~~~i~~~s----------------------------~~~a~~fY~klGy~~~g~------------~m~K~l 563 (564)
.|+.+|.|.+ +..|..||+|+||+..|. +|.|.|
T Consensus 102 ~G~~~i~L~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~fY~k~Gf~~~g~~~~~~g~~~~~~~m~k~l 175 (180)
T d1n71a_ 102 RGGITIYLGTDDLDHGTTLSQTDLYEHTFDKVASIQNLREHPYEFYEKLGYKIVGVLPNANGWDKPDIWMAKTI 175 (180)
T ss_dssp TTCCEEEEEEECSSSCBTTSSSCTTSSHHHHHHTCCBSSCCTHHHHHHTTCEEEEEETTTTSTTCCEEEEEEEC
T ss_pred CCCCEEEEEecCcccccchhhhhcccccccccchhccccHHHHHHHHHCCCEEEeeecCCCCCCCCcEEEEEec
Confidence 5999998854 557899999999999772 899987
|
| >d2g3aa1 d.108.1.1 (A:1-137) Probable acetyltransferase Atu2258 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable acetyltransferase Atu2258 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.15 E-value=6.5e-11 Score=105.06 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=64.6
Q ss_pred CCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEec
Q 008466 460 RQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS 539 (564)
Q Consensus 460 ~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s 539 (564)
+++.+||++..+... +.. .+| .+.|++. |||+|+|++||++++++|++ .|+.+|.+.+
T Consensus 44 ~~g~ivG~~~~~~~~----------~~~---~i~----~l~V~p~----~rg~GiG~~Ll~~~~~~a~~-~g~~~i~l~~ 101 (137)
T d2g3aa1 44 DDNSVTGGLVGHTAR----------GWL---YVQ----LLFVPEA----MRGQGIAPKLLAMAEEEARK-RGCMGAYIDT 101 (137)
T ss_dssp TTCCEEEEEEEEEET----------TEE---EEE----EEECCGG----GCSSSHHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred CCCCEEEEEEEEEeC----------CeE---EEE----EEEEChh----hcCCChHHHHHHHHHHHHHH-cCCceEEEec
Confidence 457889999877543 221 122 2337776 99999999999999999999 5999998866
Q ss_pred -CCCcHHHHhhCCCeeeCc-----------eEeeec
Q 008466 540 -GVGTRHYYRKLGYELEGP-----------YMVKYL 563 (564)
Q Consensus 540 -~~~a~~fY~klGy~~~g~-----------~m~K~l 563 (564)
+..|++||+|+||+..|. +|.|.|
T Consensus 102 ~n~~a~~fY~k~GF~~~g~~~~~~~~~~~~~m~K~l 137 (137)
T d2g3aa1 102 MNPDALRTYERYGFTKIGSLGPLSSGQSITWLEKRF 137 (137)
T ss_dssp SCHHHHHHHHHHTCEEEEEECCCTTSCCEEEEEEEC
T ss_pred ccHhhHHHHHhCCCEEEEEECCCCCCCcEEEEEEEC
Confidence 457999999999999873 888876
|
| >d1y7ra1 d.108.1.1 (A:1-133) Hypothetical protein SA2161 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein SA2161 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.13 E-value=6.5e-11 Score=104.40 Aligned_cols=86 Identities=26% Similarity=0.369 Sum_probs=65.7
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
-+++.+.+ +.+|||+++.... +. .-+++ .+.|+++ |||||+|++||++++++|+++
T Consensus 40 ~~~~~~~~---~~~vG~~~~~~~~---------~~---~~~i~----~l~V~p~----~rg~GiG~~Ll~~~~~~~~~~- 95 (133)
T d1y7ra1 40 FTVTLYDK---DRLIGMGRVIGDG---------GT---VFQIV----DIAVLKS----YQGQAYGSLIMEHIMKYIKNV- 95 (133)
T ss_dssp EEEEEEET---TEEEEEEEEEECS---------SS---EEEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHHH-
T ss_pred EEEEEEEC---CEEEEEEEEEecc---------CC---EEEEE----EEEEeec----ccchHHHHHHHHHHHHHHHHc-
Confidence 34556665 8899999997543 11 11222 2347776 999999999999999999995
Q ss_pred CCcEE--EEecCCCcHHHHhhCCCeeeCceEe
Q 008466 531 RSRKM--AVISGVGTRHYYRKLGYELEGPYMV 560 (564)
Q Consensus 531 g~~~i--~~~s~~~a~~fY~klGy~~~g~~m~ 560 (564)
|+.++ .+.++..|+.||+|+||+..++++.
T Consensus 96 g~~~~~l~~~a~~~a~~fY~k~GF~~~~~~~~ 127 (133)
T d1y7ra1 96 SVESVYVSLIADYPADKLYVKFGFMPTEPDSG 127 (133)
T ss_dssp CCTTCEEEEEEETTHHHHHHTTTCEECTTTEE
T ss_pred CCCEEEEEEcCChHHHHHHHHCCCEEeCCCCC
Confidence 98875 4668889999999999999887544
|
| >d1ufha_ d.108.1.1 (A:) Putative acetyltransferase YycN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Putative acetyltransferase YycN species: Bacillus subtilis [TaxId: 1423]
Probab=99.12 E-value=8.7e-11 Score=103.66 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=66.6
Q ss_pred CCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe-
Q 008466 460 RQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI- 538 (564)
Q Consensus 460 ~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~- 538 (564)
+++.++|++.+...... ..+ ...+| .+.|++. |||+|||+.||+.++++|++ +|+.+|.+.
T Consensus 67 ~~~~~ig~~~~~~~~~~------~~~---~~~i~----~~~v~~~----~rg~Gig~~ll~~~~~~~~~-~g~~~i~l~v 128 (155)
T d1ufha_ 67 NEKDIVGWLWIHAEPEH------PQQ---EAFIY----DFGLYEP----YRGKGYAKQALAALDQAARS-MGIRKLSLHV 128 (155)
T ss_dssp SSSCEEEEEEEEECTTC------TTC---EEEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHH-TTCCEEEECC
T ss_pred cCCeEEEEEEEEeeccC------CCC---ceEEE----EEEEEHH----HcCCcccchHHHHHHHHhhh-cCCceeEEEE
Confidence 45788999988755311 111 11222 2346766 99999999999999999999 699999876
Q ss_pred --cCCCcHHHHhhCCCeeeCceEeeec
Q 008466 539 --SGVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 539 --s~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
.|..|.+||+|+||+.+|..|.|.|
T Consensus 129 ~~~N~~a~~~y~k~GF~~~g~~m~k~l 155 (155)
T d1ufha_ 129 FAHNQTARKLYEQTGFQETDVVMSKKL 155 (155)
T ss_dssp CTTCHHHHHHHHHTTCCCCCCCCCCCC
T ss_pred cCCCHHHHHHHHHCCCEEEeEEEEEEC
Confidence 3567899999999999999999986
|
| >d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Aminoglycoside N-acetyltransferase AAC(6')-IY species: Salmonella enteritidis [TaxId: 149539]
Probab=99.09 E-value=3.9e-10 Score=99.45 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
+....|++.++ +.+|||+.+....+.....+ ..-+-.+| .+.|++. |||+|||++||+.++++|+
T Consensus 43 ~~~~~~va~~~---~~~vG~~~~~~~~~~~~~~~----~~~~~~i~----~l~V~~~----~rg~Gig~~Ll~~~~~~a~ 107 (147)
T d1s3za_ 43 DHLASFIAMAD---GVAIGFADASIRHDYVNGCD----SSPVVFLE----GIFVLPS----FRQRGVAKQLIAAVQRWGT 107 (147)
T ss_dssp SSEEEEEEEET---TEEEEEEEEEEECSCCTTCS----SSSEEEEE----EEEECGG----GCSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEC---CEEEEEEEEEeecCcccccC----CCCeEEEE----EEEECHH----HcCCcHHHHHHHHHHHHhh
Confidence 44567888776 88999999886642111111 11111122 2347877 9999999999999999999
Q ss_pred hcCCCcEEEEec---CCCcHHHHhhCCCeeeCc--eEee
Q 008466 528 GEHRSRKMAVIS---GVGTRHYYRKLGYELEGP--YMVK 561 (564)
Q Consensus 528 ~~~g~~~i~~~s---~~~a~~fY~klGy~~~g~--~m~K 561 (564)
+ +|+++|.+.. |..|.+||+|+||+.++. |..|
T Consensus 108 ~-~g~~~i~l~~~~~N~~a~~fY~k~GF~~~~~~~~~~k 145 (147)
T d1s3za_ 108 N-KGCREMASDTSPENTISQKVHQALGFEETERVIFYRK 145 (147)
T ss_dssp H-TTCSEEEEEECTTCHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred h-ccccceEEEEcCCCHHHHHHHHHCCCEEECeEEEEEe
Confidence 9 5999997764 456899999999988773 4444
|
| >d1tiqa_ d.108.1.1 (A:) Protease synthase and sporulation negative regulatory protein PaiA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Protease synthase and sporulation negative regulatory protein PaiA species: Bacillus subtilis [TaxId: 1423]
Probab=99.08 E-value=2.4e-10 Score=104.56 Aligned_cols=93 Identities=18% Similarity=0.339 Sum_probs=68.7
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
+...+|++++| +.+|||+.+......... ...+. -+++ .+.|.++ |||+|+|++||++++++|+
T Consensus 56 ~~~~~~v~~~~---~~ivG~~~~~~~~~~~~~--~~~~~---~~i~----~i~v~~~----~rgkGig~~ll~~~~~~~~ 119 (173)
T d1tiqa_ 56 MSSQFFFIYFD---HEIAGYVKVNIDDAQSEE--MGAES---LEIE----RIYIKNS----FQKHGLGKHLLNKAIEIAL 119 (173)
T ss_dssp TTEEEEEEEET---TEEEEEEEEEEGGGSSSC--CCTTE---EEEE----EEEECGG----GCSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEC---CEecceEEEEecCccccc--cCCCe---EEEE----EEEECHH----HcCCCCCcchhHhhhhhhh
Confidence 44567888887 899999999875411111 11111 1232 2237777 9999999999999999999
Q ss_pred hcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+ .|+++|.+. .|..|..||+|+||+..|.
T Consensus 120 ~-~g~~~i~l~v~~~N~~a~~fY~k~GF~~~g~ 151 (173)
T d1tiqa_ 120 E-RNKKNIWLGVWEKNENAIAFYKKMGFVQTGA 151 (173)
T ss_dssp H-TTCSEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred h-hhcchhhccccccCHHHHHHHHHCCCEEeeE
Confidence 9 599999775 4567899999999999874
|
| >d1yvka1 d.108.1.1 (A:5-156) Hypothetical protein YvbK (BSu33890) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein YvbK (BSu33890) species: Bacillus subtilis [TaxId: 1423]
Probab=99.06 E-value=2.6e-10 Score=103.07 Aligned_cols=82 Identities=23% Similarity=0.357 Sum_probs=65.5
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+++++ +.+||++.+.... .+ +.|-..+.|+++ |||+|+|++||+.++++|++ .
T Consensus 36 ~~~v~~~~---g~ivG~~~~~~~~---------~~-------~~~l~~i~V~p~----~rg~Gig~~Ll~~~~~~a~~-~ 91 (152)
T d1yvka1 36 ECYTAWAG---DELAGVYVLLKTR---------PQ-------TVEIVNIAVKES----LQKKGFGKQLVLDAIEKAKK-L 91 (152)
T ss_dssp EEEEEEET---TEEEEEEEEEECS---------TT-------EEEEEEEEECGG----GTTSSHHHHHHHHHHHHHHH-T
T ss_pred eEEEEEEC---CEEEEEEEEEecC---------CC-------EEEEEEeeeCHh----HcCCCcccHHHHHHHHHhhh-h
Confidence 57888887 8999999998553 11 122223447877 99999999999999999999 5
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeC
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g 556 (564)
|++++.+. +|..|.+||+|+||+.+|
T Consensus 92 g~~~~~l~~~~~n~~a~~fYek~GF~~~~ 120 (152)
T d1yvka1 92 GADTIEIGTGNSSIHQLSLYQKCGFRIQA 120 (152)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred cccccceeeccCCHHHHHHHHHCCCEEEE
Confidence 99999765 455789999999999887
|
| >d1qsra_ d.108.1.1 (A:) Catalytic domain of GCN5 histone acetyltransferase {Tetrahymena thermophila [TaxId: 5911]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Catalytic domain of GCN5 histone acetyltransferase species: Tetrahymena thermophila [TaxId: 5911]
Probab=99.06 E-value=2.8e-10 Score=104.03 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=61.0
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~ 540 (564)
++.+||++.++... +... -|++ .+.|+++ |||+|||++||+.++++|++ .|+..|.+.++
T Consensus 55 ~g~iVG~~~~~~~~----------~~~~-~ei~----~laV~p~----~rg~GiG~~Ll~~l~~~a~~-~g~~~i~l~~~ 114 (162)
T d1qsra_ 55 KQKVIGGICFRQYK----------PQRF-AEVA----FLAVTAN----EQVRGYGTRLMNKFKDHMQK-QNIEYLLTYAD 114 (162)
T ss_dssp TTEEEEEEEEEEET----------TTTE-EEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred CCEEEEEEEEEEEC----------CCCE-EEEE----EEEEcHH----HccCchHHHHHHHHHHHHHh-CCCeEEEEecC
Confidence 38899999887542 1111 1222 2348877 99999999999999999999 59999999999
Q ss_pred CCcHHHHhhCCCeeeC
Q 008466 541 VGTRHYYRKLGYELEG 556 (564)
Q Consensus 541 ~~a~~fY~klGy~~~g 556 (564)
..|.+||+|+||...+
T Consensus 115 ~~a~~fY~k~GF~~~~ 130 (162)
T d1qsra_ 115 NFAIGYFKKQGFTKEH 130 (162)
T ss_dssp TTTHHHHHHTTCBSSC
T ss_pred CccHHHHHhCCCeeec
Confidence 9999999999998765
|
| >d1y9ka1 d.108.1.1 (A:1-152) IAA acetyltransferase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: IAA acetyltransferase species: Bacillus cereus [TaxId: 1396]
Probab=99.05 E-value=2.6e-10 Score=102.98 Aligned_cols=82 Identities=26% Similarity=0.353 Sum_probs=63.4
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+.+++ +.+||++.+.... ++. -+++ .+.|+++ |||+|+|++||+.++++|++ .
T Consensus 36 ~~~v~~~~---g~ivG~~~~~~~~---------~~~---~~i~----~l~V~p~----~rg~GiG~~Ll~~~~~~a~~-~ 91 (152)
T d1y9ka1 36 LTYVAKQG---GSVIGVYVLLETR---------PKT---MEIM----NIAVAEH----LQGKGIGKKLLRHAVETAKG-Y 91 (152)
T ss_dssp EEEEEECS---SSEEEEEEEEECS---------TTE---EEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHH-T
T ss_pred eEEEEEEC---CEEEEEEEEEEcC---------CCE---EEEE----EEEEcHH----HCCCCcchHHHHHHHHHHHH-c
Confidence 46887775 8899999987543 111 1222 2337776 99999999999999999999 5
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeC
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g 556 (564)
|+..|.+. ++..|.+||+|+||+..|
T Consensus 92 g~~~i~l~t~~~n~~a~~fY~k~GF~~~~ 120 (152)
T d1y9ka1 92 GMSKLEVGTGNSSVSQLALYQKCGFRIFS 120 (152)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEeccCCHHHHHHHHHCCCEEEe
Confidence 99999775 455789999999999876
|
| >d2atra1 d.108.1.1 (A:1-137) Probable acetyltransferase SP0256 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable acetyltransferase SP0256 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.03 E-value=8.1e-11 Score=103.85 Aligned_cols=85 Identities=28% Similarity=0.391 Sum_probs=65.4
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
+-+++.+++ +.+|||+++.... ... .|-..+.|+++ |||+|||++||+++++.|++.
T Consensus 42 ~~~~~~~~~---~~ivG~~~~~~~~---------~~~-------~~i~~l~V~~~----~rg~GiG~~Ll~~~~~~~~~~ 98 (137)
T d2atra1 42 LVIYLALDG---DAVVGLIRLVGDG---------FSS-------VFVQDLIVLPS----YQRQGIGSSLMKEALGNFKEA 98 (137)
T ss_dssp SEEEEEEET---TEEEEEEEEEECS---------SSE-------EEEEEEEECTT----SCSSSHHHHHHHHHHGGGTTC
T ss_pred cEEEEEEEC---CEEEEEEEEEccC---------Cce-------EEEEEEEEEHH----HcCchHHHHHHHHHHHHHHHC
Confidence 345555665 8999999886432 011 11122347877 999999999999999999995
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCce
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~~ 558 (564)
|+..+.+.++..|.+||+|+||+..+++
T Consensus 99 -~~~~i~l~~~~~a~~fY~k~GF~~~~~~ 126 (137)
T d2atra1 99 -YQVQLATEETEKNVGFYRSMGFEILSTY 126 (137)
T ss_dssp -SEEECCCCCCHHHHHHHHHTTCCCGGGG
T ss_pred -CCeEEEEeecHHHHHHHHhCCCEECccC
Confidence 9999988899999999999999987763
|
| >d2fe7a1 d.108.1.1 (A:3-158) Probable N-acetyltransferase PA0478 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable N-acetyltransferase PA0478 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.02 E-value=4.1e-10 Score=101.22 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=67.7
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.....|++..+ +.+|||+.+....+. . .........++| |.++ |||+|+|++||++++++|+
T Consensus 47 ~~~~~~va~~~---~~ivG~~~~~~~~~~-~-----~~~~~~~i~~~~-----V~p~----~Rg~GiG~~L~~~~~~~a~ 108 (156)
T d2fe7a1 47 SPTRALMCLSE---GRPIGYAVFFYSYST-W-----LGRNGIYLEDLY-----VTPE----YRGVGAGRRLLRELAREAV 108 (156)
T ss_dssp CSEEEEEEEET---TEEEEEEEEEEEEET-T-----TTEEEEEEEEEE-----ECGG----GCC--HHHHHHHHHHHHHH
T ss_pred CCceEEEEeeC---CEEEEEEeEeecccc-c-----ccCCeEEeeeee-----echh----hhccChHHHHHHHHHHHHH
Confidence 34566888776 889999877643200 0 011112222355 8877 9999999999999999999
Q ss_pred hcCCCcEEEEe---cCCCcHHHHhhCCCeeeCceEeee
Q 008466 528 GEHRSRKMAVI---SGVGTRHYYRKLGYELEGPYMVKY 562 (564)
Q Consensus 528 ~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~~m~K~ 562 (564)
+ +|+.++.+. .|..|+.||+|+||+..+.++.-.
T Consensus 109 ~-~g~~~i~l~v~~~N~~a~~~Y~k~GF~~~~~~~~~~ 145 (156)
T d2fe7a1 109 A-NDCGRLEWSVLDWNQPAIDFYRSIGALPQDEWVRYR 145 (156)
T ss_dssp H-TTCSEEEEEEETTCHHHHHHHHHTTCEECTTEEEEE
T ss_pred H-ccCCcceEEEcCCCHHHHHHHHHCCCEEcCcEEEEE
Confidence 9 599999754 466899999999999988765433
|
| >d2fiaa1 d.108.1.1 (A:1-157) Probable acetyltransferase EF1919 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable acetyltransferase EF1919 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.01 E-value=5e-10 Score=100.23 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=63.4
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.|+...+ +.++|++.+....+ .. +.|...+.|+.+ |||+|+|++||++++++|++ +|
T Consensus 52 ~~v~~~~---~~~~g~~~~~~~~~----------~~-----~~~i~~~~v~~~----~rg~Gig~~ll~~~~~~a~~-~g 108 (157)
T d2fiaa1 52 LYLLVHE---EMIFSMATFCMEQE----------QD-----FVWLKRFATSPN----YIAKGYGSLLFHELEKRAVW-EG 108 (157)
T ss_dssp EEEEEET---TEEEEEEEEEECTT----------CS-----EEEEEEEEECGG----GTTTTHHHHHHHHHHHHHHT-TT
T ss_pred eEEEEEC---CEEEEEEEEeecCc----------cc-----eeeecccEECHH----HcCCCCcchhhHHHHHHHHH-CC
Confidence 4565554 78899999976531 11 122222347776 99999999999999999999 59
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+.+|.+. +|..|++||+|+||+..|.
T Consensus 109 ~~~i~l~v~~~N~~a~~~y~k~GF~~v~e 137 (157)
T d2fiaa1 109 RRKMYAQTNHTNHRMIRFFESKGFTKIHE 137 (157)
T ss_dssp CCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCEEeee
Confidence 9999766 4667999999999999873
|
| >d1z4ra1 d.108.1.1 (A:497-658) Catalytic domain of GCN5 histone acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Catalytic domain of GCN5 histone acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=6.4e-10 Score=101.58 Aligned_cols=84 Identities=20% Similarity=0.270 Sum_probs=66.2
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+++..++ +.+||++.++.-. +.. .-|++ .+.|+.+ |||+|+|++||+.++++|++
T Consensus 52 ~~~~v~~~~---~~iIG~i~~~~~~----------~~~-~aeI~----~laV~~~----~qgkGiG~~Lm~~l~~~~~~- 108 (162)
T d1z4ra1 52 HKTLALIKD---GRVIGGICFRMFP----------TQG-FTEIV----FCAVTSN----EQVKGYGTHLMNHLKEYHIK- 108 (162)
T ss_dssp CEEEEEEET---TEEEEEEEEEEET----------TTT-EEEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHH-
T ss_pred ceEEEEEEC---CEEEEEEEEEEEC----------CCC-EEEEE----EEEEChh----hhhhhHHHHHHHHHHHHHHH-
Confidence 455777766 8899999998532 111 12333 1237776 99999999999999999999
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeC
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
.|+..+.+.++..|.+||+|+||..+.
T Consensus 109 ~g~~~i~~~~~~~A~~fY~k~GF~~~~ 135 (162)
T d1z4ra1 109 HNILYFLTYADEYAIGYFKKQGFSKDI 135 (162)
T ss_dssp TTCCEEEEEECGGGHHHHHHTTEESCC
T ss_pred CCCcEEEEecCcchHHHHHhCCCeEec
Confidence 599999999988999999999997754
|
| >d1z4ea1 d.108.1.1 (A:4-153) Transcriptional regulator BH1968 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Transcriptional regulator BH1968 species: Bacillus halodurans [TaxId: 86665]
Probab=99.00 E-value=5.6e-10 Score=98.91 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=68.6
Q ss_pred CCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHH
Q 008466 447 NEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIA 526 (564)
Q Consensus 447 ~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A 526 (564)
++...++++..| +.+||++.+......++ +. ....++ ..+.|+++ |||+|||++||++++++|
T Consensus 49 ~~~~~~~~~~~~---g~iiG~~~~~~~~~~~~-~~-------~~~~~i--~~~~v~~~----~rg~Gig~~l~~~~~~~a 111 (150)
T d1z4ea1 49 DKNNELIVACNG---EEIVGMLQVTFTPYLTY-QG-------SWRATI--EGVRTHSA----ARGQGIGSQLVCWAIERA 111 (150)
T ss_dssp CTTEEEEEEEET---TEEEEEEEEEEEECSHH-HH-------CEEEEE--EEEEECTT----STTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEC---CceEEEEEEEeecccCc-CC-------CCEEEE--EEEEcCHH----HcCCChhHHHHHHHHHHH
Confidence 344555666655 89999998865431110 00 011111 12347777 999999999999999999
Q ss_pred HhcCCCcEEEEe---cCCCcHHHHhhCCCeeeCceEee
Q 008466 527 LGEHRSRKMAVI---SGVGTRHYYRKLGYELEGPYMVK 561 (564)
Q Consensus 527 ~~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~~m~K 561 (564)
++ .|++.|.+. .|..|..||+|+||+..+.-|..
T Consensus 112 ~~-~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~ 148 (150)
T d1z4ea1 112 KE-RGCHLIQLTTDKQRPDALRFYEQLGFKASHEGLKM 148 (150)
T ss_dssp HH-TTEEEEEEEEETTCTTHHHHHHHHTCEEEEEEEEE
T ss_pred HH-cCCCEEEEEEcCCCHHHHHHHHHCCCEEcceeEEE
Confidence 99 599999765 36779999999999988876653
|
| >d2gana1 d.108.1.1 (A:1-182) Hypothetical protein PH0736 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein PH0736 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.00 E-value=4.5e-10 Score=103.81 Aligned_cols=102 Identities=18% Similarity=0.055 Sum_probs=67.9
Q ss_pred CCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHH
Q 008466 447 NEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIA 526 (564)
Q Consensus 447 ~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A 526 (564)
....++|++.+| +.+||++.+...... .....-.......+-+.|...+.|+++ |||+|||++||+.++++|
T Consensus 64 ~~~~~~~va~~d---~~ivG~~~l~~~~~~-~~~~~~~~~~~~~~~~~~I~~l~V~p~----~rg~GiG~~Ll~~~~~~a 135 (182)
T d2gana1 64 QEFDELYTYQKD---NRIIGTIALVYKRIK-EKGIWWVPEELMNEKVGLIEFFVVDPE----FQGKGIGSTLLEFAVKRL 135 (182)
T ss_dssp TTCSEEEEEEES---SCEEEEEEEECSCGG-GTCCTTCCGGGCSTTEEEEEEEEECTT----STTSSHHHHHHHHHHHHH
T ss_pred CCcceEEEEEEC---CEEEEEEEEeccCcc-cccccccccccCCCCEEEEEEEEECHh----hcCCCHHHHHHHHHHHHH
Confidence 345678888887 889999999754311 000000000001112233334457877 999999999999999999
Q ss_pred HhcCCCcEEEE--ecCCCcHHHHhhCCCeeeCc
Q 008466 527 LGEHRSRKMAV--ISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 527 ~~~~g~~~i~~--~s~~~a~~fY~klGy~~~g~ 557 (564)
++ .|++.+.. .++..|.+||+|+||+..+.
T Consensus 136 k~-~G~~~~l~~~~~n~~a~~fY~k~GF~~~~~ 167 (182)
T d2gana1 136 RS-LGKDPYVVTFPNLEAYSYYYMKKGFREIMR 167 (182)
T ss_dssp HH-TTCEEEEEECGGGSHHHHHHHTTTEEEEEC
T ss_pred HH-cCCeEEEEEccCCHHHHHHHHHCCCEEeeE
Confidence 99 59874322 25678999999999999874
|
| >d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Phosphinothricin acetyltransferase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.97 E-value=5e-10 Score=100.74 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=63.0
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.++++..| +.+|||+.+....+. . ...-.-+.-+| |+++ |||+|+|++||+.++++|++ +
T Consensus 53 ~~~va~~~---~~ivG~~~~~~~~~~------~-~~~~~~~~~~~-----v~p~----~rg~Glg~~ll~~~~~~a~~-~ 112 (163)
T d1yr0a1 53 PVIVAILD---GKVAGYASYGDWRAF------D-GYRHTREHSVY-----VHKD----ARGHGIGKRLMQALIDHAGG-N 112 (163)
T ss_dssp CEEEEEET---TEEEEEEEEEESSSS------G-GGTTEEEEEEE-----ECTT----STTSSHHHHHHHHHHHHHHT-T
T ss_pred cEEEEEEC---CeEEEeecceeeccc------c-cccceEEEEee-----eeec----ccCCCCceeeeecccccccc-c
Confidence 45666655 789999998754311 0 00001112233 7776 99999999999999999998 5
Q ss_pred CCcEEEE---ecCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAV---ISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~---~s~~~a~~fY~klGy~~~g~ 557 (564)
|+++|.+ ..|..|.+||+|+||+.+|.
T Consensus 113 g~~~l~~~v~~~N~~a~~~y~k~GF~~~G~ 142 (163)
T d1yr0a1 113 DVHVLIAAIEAENTASIRLHESLGFRVVGR 142 (163)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred ccceEEEEEecCCHHHHHHHHHCCCEEEEE
Confidence 9999854 34778899999999999873
|
| >d1cjwa_ d.108.1.1 (A:) Serotonin N-acetyltranferase {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Serotonin N-acetyltranferase species: Sheep (Ovis aries) [TaxId: 9940]
Probab=98.96 E-value=1.3e-09 Score=97.95 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=67.8
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.|+.+.+ +.++|++..........-.+.. .......-++|...+.|++. |||+|+|+.||+.+.+++++..+
T Consensus 52 ~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~V~p~----~rg~GiG~~Ll~~~~~~~~~~~~ 123 (166)
T d1cjwa_ 52 SLGWFVE---GRLVAFIIGSLWDEERLTQESL-ALHRPRGHSAHLHALAVHRS----FRQQGKGSVLLWRYLHHVGAQPA 123 (166)
T ss_dssp EEEEEET---TEEEEEEEEEEECSSSCCGGGG-GCCCTTCCEEEEEEEEECTT----STTSSHHHHHHHHHHHHHHTSTT
T ss_pred EEEEEEC---Cceeeeecccccccccchhhhh-hcccCCCCEEEEEEEEECHH----HccCCHHHHHHHHHHHHHHHhCC
Confidence 3555555 7889998766543121111110 00011112455556668887 99999999999999988877547
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+..+.+.++..|.+||+|+||+..|+
T Consensus 124 ~~~i~l~~~~~ai~fY~k~GF~~~G~ 149 (166)
T d1cjwa_ 124 VRRAVLMCEDALVPFYQRFGFHPAGP 149 (166)
T ss_dssp CCEEEEEECGGGHHHHHTTTEEEEEE
T ss_pred CceEEEecCHHHHHHHHHCCCEEEcc
Confidence 78898889999999999999999984
|
| >d1u6ma_ d.108.1.1 (A:) Putative acetyltransferase EF0945 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Putative acetyltransferase EF0945 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.91 E-value=1.1e-09 Score=99.97 Aligned_cols=66 Identities=21% Similarity=0.353 Sum_probs=54.6
Q ss_pred eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc---------eEee
Q 008466 494 VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI---SGVGTRHYYRKLGYELEGP---------YMVK 561 (564)
Q Consensus 494 vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~---------~m~K 561 (564)
.|...+.|+++ |||+|+|++||++++++|++. |+..+.+. .|..|.+||+|+||+..+. +|.|
T Consensus 112 ~~i~~l~V~p~----~rg~GiG~~Ll~~~~~~a~~~-g~~~~~l~v~~~N~~a~~~Yek~GF~~~~~~~~~~~~~~~m~k 186 (189)
T d1u6ma_ 112 WYLDTISVDER----FRGMGIGSKLLDALPEVAKAS-GKQALGLNVDFDNPGARKLYASKGFKDVTTMTISGHLYNHMQK 186 (189)
T ss_dssp EEEEEEEECGG----GTTSSHHHHHHHTHHHHHHTT-TCSEEEEEEETTCHHHHHHHHTTTCEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEECHH----HcCCCcCcchhHHHHHHHHhc-CCceeEEEEcCCCHHHHHHHHHCCCEEEEEEEECCcEEeeEEE
Confidence 44455668877 999999999999999999994 99998655 3556899999999999874 7999
Q ss_pred ecC
Q 008466 562 YLE 564 (564)
Q Consensus 562 ~l~ 564 (564)
.|+
T Consensus 187 ~~~ 189 (189)
T d1u6ma_ 187 EVE 189 (189)
T ss_dssp EC-
T ss_pred eCC
Confidence 874
|
| >d2ae6a1 d.108.1.1 (A:1-161) Putative acetyltransferase EF0244 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Putative acetyltransferase EF0244 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.90 E-value=1.2e-09 Score=97.92 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=65.5
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+++.+ +.+|||+.++...+. + ..-+++-..+.|+++ |||||+|++||+.++++|++
T Consensus 50 ~~~~va~~~---~~~vG~~~~~~~~~~----~--------~~~~~~~~~~~v~~~----~rg~Gig~~ll~~l~~~~~~- 109 (161)
T d2ae6a1 50 ETIFVAISG---QQLAGFIEVHPPTSL----A--------AHQKQWLLSIGVSPD----FQDQGIGGSLLSYIKDMAEI- 109 (161)
T ss_dssp SEEEEEEET---TEEEEEEEEECSSSC----G--------GGTTEEEEEEEECGG----GTTSSHHHHHHHHHHHHHHH-
T ss_pred CcEEEEEEC---CEEEEEEeecccccc----c--------ccceEEEEEEEEeec----cccccccccchhheeecccc-
Confidence 457888775 899999999843210 0 001122223346776 99999999999999999998
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+|++++.+. +|..+++||+|+||+.+|.
T Consensus 110 ~g~~~i~~~~~~~N~~a~~~y~~~GF~~~g~ 140 (161)
T d2ae6a1 110 SGIHKLSLRVMATNQEAIRFYEKHGFVQEAH 140 (161)
T ss_dssp HTCCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred ccchhheehhccccHHHHHHHHHCCCEEEEE
Confidence 599998654 5678999999999999884
|
| >d1mk4a_ d.108.1.1 (A:) Hypothetical protein YqiY {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein YqiY species: Bacillus subtilis [TaxId: 1423]
Probab=98.90 E-value=2.6e-09 Score=95.80 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=62.7
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..|+++++ +.+|||+.........+ .-.+| +| |++. |||+|+|++||+.+++++++
T Consensus 43 ~~~v~~~~---~~ivG~~~~~~~~~~~~----------~~~i~~i~-----V~p~----~rg~Gig~~Ll~~~~~~~~~- 99 (157)
T d1mk4a_ 43 TSFITSEH---NSMTGFLIGFQSQSDPE----------TAYIHFSG-----VHPD----FRKMQIGKQLYDVFIETVKQ- 99 (157)
T ss_dssp GCEEEESS---SSEEEEEEEEECSSSTT----------EEEEEEEE-----ECTT----SCHHHHHHHHHHHHHHHHHT-
T ss_pred eEEEEEEC---CEEEEEeeeeeeccCCc----------cceeeEEE-----EEHH----HcCCcccchHHHHHHHhhcc-
Confidence 35777766 88999988765431111 12222 44 7777 99999999999999999998
Q ss_pred CCCcEEEEec---CCCcHHHHhhCCCeeeC
Q 008466 530 HRSRKMAVIS---GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 530 ~g~~~i~~~s---~~~a~~fY~klGy~~~g 556 (564)
+|+.+|.+.. |..+..||+|+||+.++
T Consensus 100 ~g~~~v~~~~~~~N~~a~~~y~k~GF~~~~ 129 (157)
T d1mk4a_ 100 RGCTRVKCVTSPVNKVSIAYHTKLGFDIEK 129 (157)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHTTCEECC
T ss_pred ccceEEEEEeccchHHHHHHHHHCCCEEee
Confidence 5999997764 44589999999998765
|
| >d2fl4a1 d.108.1.1 (A:1-146) Probable spermine/spermidine acetyltransferase EF1086 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable spermine/spermidine acetyltransferase EF1086 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.87 E-value=3.9e-09 Score=93.35 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=62.5
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
...|+.+.+ +.+||++.+....+ +.+ +++ .+.|+++ |||+|||++||+.+.+++.++
T Consensus 45 ~~~~~i~~~---~~~vG~~~~~~~~~---------~~~---~i~----~~~v~~~----~rgkGiG~~ll~~~~~~~~~~ 101 (146)
T d2fl4a1 45 WESAGIYDG---NQLIGYAMYGRWQD---------GRV---WLD----RFLIDQR----FQGQGYGKAACRLLMLKLIEK 101 (146)
T ss_dssp EEEEEEEET---TEEEEEEEEEECTT---------SCE---EEE----EEEECGG----GTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEC---CEEEEEEEEEEcCC---------CeE---EEe----eEEEcHH----HcCCChhhhhhhhhccccccc
Confidence 445666665 88999999986531 111 122 2236766 999999999999987766554
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+|++++.+. +|..|.+||+|+||+.+|.
T Consensus 102 ~~~~~i~l~v~~~N~~a~~~Y~k~GF~~~g~ 132 (146)
T d2fl4a1 102 YQTNKLYLSVYDTNSSAIRLYQQLGFVFNGE 132 (146)
T ss_dssp SSCSEEEEEECTTCHHHHHHHHHTTCEEEEE
T ss_pred cCceEEEeecccccHHHHHHHHHCCCEEeeE
Confidence 699998765 4567999999999999884
|
| >d1wwza1 d.108.1.1 (A:1-157) Hypothetical protein PH1933 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein PH1933 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.86 E-value=2.8e-09 Score=94.27 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=61.5
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+...| +.+||++.+...... ... ..-.-+++ .+.|++. |||+|+|++||..++++|++ .|
T Consensus 57 ~~v~~~~---~~~vg~~~~~~~~~~----~~~--~~~~~~i~----~l~V~p~----~rg~GiG~~Ll~~~~~~a~~-~~ 118 (157)
T d1wwza1 57 FFVAKVG---DKIVGFIVCDKDWFS----KYE--GRIVGAIH----EFVVDKK----FQGKGIGRKLLITCLDFLGK-YN 118 (157)
T ss_dssp EEEEEET---TEEEEEEEEEEEEEE----TTT--TEEEEEEE----EEEECGG----GTTSSHHHHHHHHHHHHHHT-TC
T ss_pred EEEEEEC---CEEEEEEEeeccccc----ccc--CCcEEEEE----EEEEEeh----hccchhHHHHHHHHHHHHHH-hC
Confidence 5777776 889999998754200 000 00111233 2337777 99999999999999999998 48
Q ss_pred CcEEE-Ee-cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMA-VI-SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~-~~-s~~~a~~fY~klGy~~~g~ 557 (564)
...+. +. +|..|.+||+|+||+..|.
T Consensus 119 ~~~~~~v~~~N~~a~~~Y~k~GF~~~g~ 146 (157)
T d1wwza1 119 DTIELWVGEKNYGAMNLYEKFGFKKVGK 146 (157)
T ss_dssp SEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred CceEEEEcCCCHHHHHHHHHCCCEEEeE
Confidence 76543 22 4668999999999999884
|
| >d1vhsa_ d.108.1.1 (A:) Putative phosphinothricin acetyltransferase YwnH {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Putative phosphinothricin acetyltransferase YwnH species: Bacillus subtilis [TaxId: 1423]
Probab=98.84 E-value=4.9e-09 Score=94.46 Aligned_cols=86 Identities=17% Similarity=0.320 Sum_probs=61.1
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.|+..++ ++.+||++.+...... +.-. -.-+..+| |++. |||+|||+.||++++++|++ .|
T Consensus 53 ~~v~~~~--~~~ivG~~~~~~~~~~---~~~~----~~~~~~~~-----v~~~----~rg~Gig~~l~~~~~~~~~~-~g 113 (165)
T d1vhsa_ 53 LYVAEDE--NGNVAAWISFETFYGR---PAYN----KTAEVSIY-----IDEA----CRGKGVGSYLLQEALRIAPN-LG 113 (165)
T ss_dssp EEEEECT--TSCEEEEEEEEESSSS---GGGT----TEEEEEEE-----ECGG----GCSSSHHHHHHHHHHHHGGG-GT
T ss_pred eEEEEec--CCceEeeeeeeecccc---cccc----ceEEEeee-----cCch----hhcccccchhhhhhhhhhcc-cc
Confidence 4555543 4788999988633200 0000 11222233 7776 99999999999999999998 49
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeC
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g 556 (564)
+++|.+. .|..+..||+|+||+.+|
T Consensus 114 ~~~i~~~v~~~N~~a~~~y~k~GF~~~g 141 (165)
T d1vhsa_ 114 IRSLMAFIFGHNKPSLKLFEKHGFAEWG 141 (165)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred ceeEEEEEecCCHHHHHHHHHCCCEEEE
Confidence 9998543 466789999999999987
|
| >d1qsma_ d.108.1.1 (A:) Histone acetyltransferase HPA2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Histone acetyltransferase HPA2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=2.7e-09 Score=94.38 Aligned_cols=84 Identities=14% Similarity=0.126 Sum_probs=60.3
Q ss_pred CCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe
Q 008466 460 RQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI 538 (564)
Q Consensus 460 ~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~ 538 (564)
.++.+||+..+...... .. ..-.-.++ +| |... +||+|||++||++++++|++ +|+.+|.+.
T Consensus 59 ~~~~ivg~~~~~~~~~~-----~~--~~~~~~l~~l~-----v~~~----~rg~GiG~~L~~~~~~~a~~-~g~~~i~l~ 121 (150)
T d1qsma_ 59 SSEKIIGMINFFNHMTT-----WD--FKDKIYINDLY-----VDEN----SRVKGAGGKLIQFVYDEADK-LGTPSVYWC 121 (150)
T ss_dssp SSCCEEEEEEEEEECCT-----TC--SSCEEEEEEEE-----ECGG----GCSSSHHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred hcCcEEEEEEEeecccc-----cc--ccchheehhhh-----hhhc----ccCccHHHHHHHHHHhhhcc-cccccceeE
Confidence 44788999988754311 10 11111222 44 6766 99999999999999999999 599998665
Q ss_pred ---cCCCcHHHHhhCCCeeeCceEe
Q 008466 539 ---SGVGTRHYYRKLGYELEGPYMV 560 (564)
Q Consensus 539 ---s~~~a~~fY~klGy~~~g~~m~ 560 (564)
.|..|+.||+|+||+.+...+.
T Consensus 122 v~~~N~~A~~~Y~k~GFk~~~~~~~ 146 (150)
T d1qsma_ 122 TDESNHRAQLLYVKVGYKAPKILYK 146 (150)
T ss_dssp EETTCHHHHHHHHHHEEECSEEEEE
T ss_pred EccCCHHHHHHHHHcCCCCcCeEEE
Confidence 4668999999999987654443
|
| >d1yvoa1 d.108.1.1 (A:4-172) Hypothetical protein PA4866 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein PA4866 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.84 E-value=6.3e-09 Score=94.10 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=61.6
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+..++ ++.+||++.+....+ ++... -+-+..+| |+++ |||+|+|++|++.++++|++ .|
T Consensus 52 ~~v~~~~--~~~~vG~~~~~~~~~---~~~~~----~~~~~~i~-----v~p~----~rg~G~g~~l~~~~~~~a~~-~g 112 (169)
T d1yvoa1 52 ILVASDA--AGEVLGYASYGDWRP---FEGFR----GTVEHSVY-----VRDD----QRGKGLGVQLLQALIERARA-QG 112 (169)
T ss_dssp EEEEECT--TCCEEEEEEEEESSS---SGGGT----TEEEEEEE-----ECGG----GTTSSHHHHHHHHHHHHHHH-TT
T ss_pred eEEEEec--CCCEEEeeccccccc---ccccc----ceEEEEee-----cChh----hhcCCeeeeeeeeecccccc-cc
Confidence 4555443 367899998874321 11111 11233344 7776 99999999999999999999 59
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeC
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g 556 (564)
+++|.+. .|..+.+||+|+||+.+|
T Consensus 113 ~~~l~~~v~~~N~~s~~~y~k~GF~~~g 140 (169)
T d1yvoa1 113 LHVMVAAIESGNAASIGLHRRLGFEISG 140 (169)
T ss_dssp CCEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred ceEEEEEeccCcHHHHHHHhcCCcEEEE
Confidence 9998543 466789999999999987
|
| >d2ge3a1 d.108.1.1 (A:6-169) Probable acetyltransferase Atu2290 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable acetyltransferase Atu2290 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.84 E-value=2.1e-09 Score=96.23 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=64.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+.+ +.+||++.+...... . ..-.-++.+ .|+++ |||+|||+.||+.++++|++
T Consensus 53 ~~~~v~~~~---~~~vG~~~~~~~~~~----~----~~~~~~~~~-----~v~~~----~rg~Gig~~l~~~~~~~a~~- 111 (164)
T d2ge3a1 53 HPQFVAIAD---GDVIGWCDIRRQDRA----T----RAHCGTLGM-----GILPA----YRNKGLGARLMRRTLDAAHE- 111 (164)
T ss_dssp CCEEEEEET---TEEEEEEEEEECCST----T----TTTEEEEEE-----EECGG----GTTSSHHHHHHHHHHHHHHH-
T ss_pred ceEEEEEEC---CEEEEEEEeeccccC----C----cCcEEEEEE-----EeChh----hccccccccchhhhhheecc-
Confidence 456777765 789999988744311 0 000112223 36776 99999999999999999999
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+|+++|.+. .|..+.+||+|+||+.+|.
T Consensus 112 ~~~~~i~~~v~~~N~~s~~~y~k~GF~~~g~ 142 (164)
T d2ge3a1 112 FGLHRIELSVHADNARAIALYEKIGFAHEGR 142 (164)
T ss_dssp HTCCEEEEEEETTCHHHHHHHHHHTCEEEEE
T ss_pred ccccccccccCcchHHHHHHHHHCCCEEEEE
Confidence 599998654 4667899999999999873
|
| >d2euia1 d.108.1.1 (A:1-153) Probable acetyltransferase PA4026 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable acetyltransferase PA4026 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.83 E-value=1.9e-09 Score=95.72 Aligned_cols=82 Identities=20% Similarity=0.245 Sum_probs=60.0
Q ss_pred CCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe-
Q 008466 460 RQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI- 538 (564)
Q Consensus 460 ~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~- 538 (564)
+++.+||++.+....+. .. ..-.-.+| .+-|+.. +||+|+|++||+.++++|++ .|+++|.+.
T Consensus 56 ~~~~ivG~~~~~~~~~~-----~~--~~~~~~i~----~~~V~~~----~r~~Gig~~Ll~~~~~~ak~-~g~~~i~l~~ 119 (153)
T d2euia1 56 EEDRLLGFCQLYPSFSS-----LS--LKRVWILN----DIYVAEE----ARRQLVADHLLQHAKQMARE-THAVRMRVST 119 (153)
T ss_dssp SSCCEEEEEEEEEEEET-----TT--TEEEEEEE----EEEECTT----SCHHHHHHHHHHHHHHHHHH-TTEEEEEEEE
T ss_pred cCCeEEEEEeeeccccc-----cc--ccceEEec----ceeeeec----ccCcchhhHHHHHHhhhHHH-hhhccceEEe
Confidence 45788999988644211 00 11111232 2337777 99999999999999999999 599999765
Q ss_pred --cCCCcHHHHhhCCCeeeCc
Q 008466 539 --SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 --s~~~a~~fY~klGy~~~g~ 557 (564)
.|..|++||+|+||+.++.
T Consensus 120 ~~~N~~a~~~Y~k~GF~~~~~ 140 (153)
T d2euia1 120 SVDNEVAQKVYESIGFREDQE 140 (153)
T ss_dssp ETTCHHHHHHHHTTTCBCCCS
T ss_pred cCCCHHHHHHHHHCCCEEcce
Confidence 3567999999999998885
|
| >d1ygha_ d.108.1.1 (A:) Catalytic domain of GCN5 histone acetyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Catalytic domain of GCN5 histone acetyltransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=6.3e-09 Score=94.99 Aligned_cols=76 Identities=21% Similarity=0.242 Sum_probs=57.3
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEE-EEec
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKM-AVIS 539 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i-~~~s 539 (564)
++.+||++.++... +. -.-|++ .+.|+++ |||+|+|++||+++++.|++. |...+ ...+
T Consensus 56 ~~~iVG~~~~~~~~----------~~-~~aeI~----~laV~p~----~rg~GiG~~L~~~l~~~~k~~-~~~~~~~~~~ 115 (164)
T d1ygha_ 56 PLTVVGGITYRPFD----------KR-EFAEIV----FCAISST----EQVRGYGAHLMNHLKDYVRNT-SNIKYFLTYA 115 (164)
T ss_dssp TTEEEEEEEEEEEG----------GG-TEEEEE----EEEECTT----CCCTTHHHHHHHHHHHHHHHH-SCCCEEEEEE
T ss_pred CCeEEEEEEEEecC----------CC-CEEEEE----EEEECch----hccCHHHHHHHHHHHHHHHhh-CceEEEEEec
Confidence 48899999987643 11 112343 1338887 999999999999999999985 65555 4456
Q ss_pred CCCcHHHHhhCCCeeeC
Q 008466 540 GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 540 ~~~a~~fY~klGy~~~g 556 (564)
+..|.+||+|+||..++
T Consensus 116 n~~A~~fY~k~GF~~~~ 132 (164)
T d1ygha_ 116 DNYAIGYFKKQGFTKEI 132 (164)
T ss_dssp CGGGHHHHHHTTCBSSC
T ss_pred CHHHHHHHHhcCCEEec
Confidence 88999999999997765
|
| >d2i6ca1 d.108.1.1 (A:1001-1160) Putative acetyltransferase PA4794 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Putative acetyltransferase PA4794 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.78 E-value=1.2e-08 Score=91.26 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=59.9
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+...| +.+|||+.+.... .. ...|+. .+.|+.+ |||||||++||+.++++|++..
T Consensus 51 ~~~v~~~~---g~~vG~~~~~~~~----------~~---~~~~i~--~~~V~p~----~rgkGig~~ll~~~~~~a~~~~ 108 (160)
T d2i6ca1 51 GSTVAVHD---GQVLGFANFYQWQ----------HG---DFCALG--NMMVAPA----ARGLGVARYLIGVMENLAREQY 108 (160)
T ss_dssp EEEEEEET---TEEEEEEEEEEEE----------TT---TEEEEE--EEEECGG----GTTTTHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEC---CEEEEEeeeeccc----------cC---CEEEEE--EeEeCHh----HcCCcchhhhhHHHHHHHHHhc
Confidence 34666554 8899999886432 01 112222 2336666 9999999999999999998853
Q ss_pred CCcEEEE---ecCCCcHHHHhhCCCeeeC
Q 008466 531 RSRKMAV---ISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~---~s~~~a~~fY~klGy~~~g 556 (564)
+.+.+.+ .+|..|.+||+|+||+.++
T Consensus 109 ~~~~i~~~~~~~N~~a~~~y~k~GF~~~~ 137 (160)
T d2i6ca1 109 KARLMKISCFNANAAGLLLYTQLGYQPRA 137 (160)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred cccceeeecccccchhhhHHHhCCCEEEE
Confidence 5666743 3577899999999998865
|
| >d1bo4a_ d.108.1.1 (A:) Aminoglycoside 3-N-acetyltransferase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Aminoglycoside 3-N-acetyltransferase species: Serratia marcescens [TaxId: 615]
Probab=98.70 E-value=1.2e-08 Score=88.52 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=59.9
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.+...|++..+ +.+||++.+.... . ... .. .+.++ ..+.|+++ |||+|||++||++++++|+
T Consensus 50 ~~~~~~v~~~~---~~ivG~~~~~~~~-~-----~~~-~~--~~~~i--~~l~V~p~----~Rg~Gig~~Ll~~~~~~a~ 111 (137)
T d1bo4a_ 50 KTFIALAAFDQ---EAVVGALAAYVLP-K-----FEQ-PR--SEIYI--YDLAVSGE----HRRQGIATALINLLKHEAN 111 (137)
T ss_dssp SSEEEEEEEET---TEEEEEEEEEEEE-C-----SSS-SC--EEEEE--EEEEECTT----STTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEC---Ceeeeeccccccc-C-----ccC-CC--CEEEE--EEEEEcHH----HhhhchhhHHHHHHHHHHH
Confidence 33445666665 8899999776432 0 010 11 12222 23448887 9999999999999999999
Q ss_pred hcCCCcEEEEe---cCCCcHHHHhhCC
Q 008466 528 GEHRSRKMAVI---SGVGTRHYYRKLG 551 (564)
Q Consensus 528 ~~~g~~~i~~~---s~~~a~~fY~klG 551 (564)
+. |+..|.+. .|..|++||+|+|
T Consensus 112 ~~-g~~~i~l~v~~~N~~a~~~y~~~G 137 (137)
T d1bo4a_ 112 AL-GAYVIYVQADYGDDPAVALYTKLG 137 (137)
T ss_dssp HH-TCCEEEEECCCSCCSSEEEEEEC-
T ss_pred Hc-CCCEEEEEEeCCCHHHHHHHHhcC
Confidence 95 99999775 3678999999998
|
| >d2b5ga1 d.108.1.1 (A:3-169) Diamine acetyltransferase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Diamine acetyltransferase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=9.5e-09 Score=92.11 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=57.4
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+|||+.+...... ...- +.|...+-|.++ |||+|+|++||++++++|++ +|+.+|.+.
T Consensus 66 ~~~ivG~~~~~~~~~~--------~~~~----~~~i~~l~v~~~----~rg~Gig~~L~~~l~~~a~~-~g~~~i~l~v~ 128 (167)
T d2b5ga1 66 GHSIVGFAMYYFTYDP--------WIGK----LLYLEDFFVMSD----YRGFGIGSEILKNLSQVAMR-CRCSSMHFLVA 128 (167)
T ss_dssp CCCEEEEEEEEEEEET--------TTEE----EEEEEEEEECGG----GCSSSHHHHHHHHHHHHHHH-HTCSEEEEEEE
T ss_pred CCeEEEEEEEEeeccc--------cccc----ceecceeeeeec----cccCCCchhhhhhhhhhhcc-cCcceeeeecc
Confidence 4678999877654211 0111 122222336766 99999999999999999999 499999764
Q ss_pred -cCCCcHHHHhhCCCeeeC
Q 008466 539 -SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g 556 (564)
.|..|++||+|+||+..+
T Consensus 129 ~~N~~A~~fY~k~GF~~~~ 147 (167)
T d2b5ga1 129 EWNEPSINFYKRRGASDLS 147 (167)
T ss_dssp TTCHHHHHHHHTTTCEEHH
T ss_pred cCcHHHHHHHHHCCCEECc
Confidence 356799999999998865
|
| >d2cy2a1 d.108.1.1 (A:1-174) Probable acetyltransferase TTHA1209 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable acetyltransferase TTHA1209 species: Thermus thermophilus [TaxId: 274]
Probab=98.69 E-value=2.2e-08 Score=90.57 Aligned_cols=81 Identities=26% Similarity=0.329 Sum_probs=59.3
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+|||+.+...... ..+.. . -+++ .+.|++. |||+|+|++||+.++++|++ .|++++.+.
T Consensus 67 ~~~ivG~~~~~~~~~~-~~~~~---~---~~i~----~l~v~~~----~rg~Gig~~ll~~~~~~a~~-~g~~~~~l~v~ 130 (174)
T d2cy2a1 67 SGEVVGFAAFGPDRAS-GFPGY---T---AELW----AIYVLPT----WQRKGLGRALFHEGARLLQA-EGYGRMLVWVL 130 (174)
T ss_dssp TSCEEEEEEEEECCSC-SCTTC---C---EEEE----EEEECGG----GCSSSHHHHHHHHHHHHHHH-TTCCEEEEEEE
T ss_pred CCEEEeeeeccccccc-cccCC---c---eEEE----EEEEcHH----HhhCCCchHHHHHHHHHHHH-cCCCeEEEEEe
Confidence 4788999988755311 11111 1 1222 1236776 99999999999999999999 599998663
Q ss_pred -cCCCcHHHHhhCCCeeeCc
Q 008466 539 -SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g~ 557 (564)
.|..+.+||+|+||+..|.
T Consensus 131 ~~N~~a~~~y~k~GF~~~g~ 150 (174)
T d2cy2a1 131 KENPKGRGFYEHLGGVLLGE 150 (174)
T ss_dssp TTCHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHHHHHHHCCCEEEeE
Confidence 4667899999999999874
|
| >d1m4ia_ d.108.1.1 (A:) Aminoglycoside 2'-N-acetyltransferase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Aminoglycoside 2'-N-acetyltransferase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.65 E-value=4.1e-08 Score=90.62 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=63.4
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
+..+++.+++ +.+||...+.... .-. ++...+- .|-..|.|+++ |||+|||++||+++++++++
T Consensus 46 ~~~~~l~~~~---~~~v~~~~~~~~~-----~~~--~~~~~~~--~~I~~v~V~p~----~Rg~Gig~~Ll~~~~~~~r~ 109 (181)
T d1m4ia_ 46 GGMHALIWHH---GAIIAHAAVIQRR-----LIY--RGNALRC--GYVEGVAVRAD----WRGQRLVSALLDAVEQVMRG 109 (181)
T ss_dssp SSEEEEEEET---TEEEEEEEEEEEE-----EEE--TTEEEEE--EEEEEEEECGG----GTTSSHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeC---CceeEEEEEEEEE-----Eec--CCcccce--EEEEEEEEcHH----HCCCHHHHHHHHHHHHHHHh
Confidence 3567888876 8889988764211 001 1111111 12234457776 99999999999999999998
Q ss_pred cCCCcEEEEecCCCcHHHHhhCCCeeeC
Q 008466 529 EHRSRKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 529 ~~g~~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
. + ....+.++..+.+||+|+||+...
T Consensus 110 ~-~-~~~~l~~~~~~~~fY~~~G~~~~~ 135 (181)
T d1m4ia_ 110 A-Y-QLGALSSSARARRLYASRGWLPWH 135 (181)
T ss_dssp H-C-SEEEEECCTTTHHHHHHTTCEECC
T ss_pred c-C-CEEEEecchhhHHHHHHcCCEEcC
Confidence 5 4 566688899999999999998754
|
| >d2aj6a1 d.108.1.1 (A:1-118) Hypothetical protein MW0638 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein MW0638 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.47 E-value=1.5e-07 Score=79.96 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=49.5
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
....+|++..+ +.+|||+.+...... .. -+++ .+-|+++ |||+|+|++||+++++||+
T Consensus 51 ~~~~~~va~~~---~~ivG~~~~~~~~~~--------~~---~~i~----~l~V~~~----~RgkGiG~~Ll~~~~~~a~ 108 (118)
T d2aj6a1 51 TNDKIYIYENE---GQLIAFIWGHFSNEK--------SM---VNIE----LLYVEPQ----FRKLGIATQLKIALEKWAK 108 (118)
T ss_dssp SSEEEEEEEET---TEEEEEEEEEEETTT--------TE---EEEE----EEEECGG----GTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEC---CEEEEEeeeccccCC--------Ce---EEEE----EEEEchh----hccCHHHHHHHHHHHHHHH
Confidence 34567888776 899999988765311 01 1222 2337877 9999999999999999999
Q ss_pred hcCCCcEEEE
Q 008466 528 GEHRSRKMAV 537 (564)
Q Consensus 528 ~~~g~~~i~~ 537 (564)
+ +|+++|.+
T Consensus 109 ~-~g~~~i~~ 117 (118)
T d2aj6a1 109 T-MNAKRISN 117 (118)
T ss_dssp H-TTCSCCCC
T ss_pred H-hCCCEEEe
Confidence 9 59998754
|
| >d2beia1 d.108.1.1 (A:3-169) Diamine acetyltransferase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Diamine acetyltransferase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=5.8e-08 Score=86.27 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=44.9
Q ss_pred ccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe---cCCCcHHHHhhCCCeeeC
Q 008466 501 VHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI---SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 501 v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~---s~~~a~~fY~klGy~~~g 556 (564)
|... |||+|||++||+.++++|++ .|+.+|.+. .|..|+.||+|+||+..+
T Consensus 94 v~~~----~rg~GiG~~L~~~~~~~a~~-~g~~~i~l~v~~~N~~A~~~Y~k~GF~~~~ 147 (167)
T d2beia1 94 VMPE----YRGQGIGSKIIKKVAEVALD-KGCSQFRLAVLDWNQRAMDLYKALGAQDLT 147 (167)
T ss_dssp ECGG----GCSSSHHHHHHHHHHHHHHH-TTCCEEEEEEETTCHHHHHHHHHTTCEEHH
T ss_pred cCHh----hcCCCcchhhHHHHHHHHhh-hcccccceeeccCCHHHHHHHHHCCCEEcc
Confidence 6665 99999999999999999999 599998654 466899999999999876
|
| >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: MoCo biosynthesis proteins domain: Molybdenum cofactor biosynthesis protein A MoaA species: Staphylococcus aureus [TaxId: 1280]
Probab=98.29 E-value=1e-05 Score=79.75 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=67.5
Q ss_pred EEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhc-CCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHH
Q 008466 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDT-NRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVER 313 (564)
Q Consensus 235 itiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i-~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~ 313 (564)
..+-|+-..++++.++.|+++|+.+|.+.+++.++++.+.+ +++.+.+.+.++++.++++|+.+.+...+ .++.+...
T Consensus 96 ~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~~g~~~~~~~~v-~~~~n~~~ 174 (327)
T d1tv8a_ 96 DIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVI-QKGINDDQ 174 (327)
T ss_dssp EEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEEEEE-CTTTTGGG
T ss_pred ccccccccccchhHHHHHHHcCCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHHcCCCcceeEEE-ecCccccc
Confidence 33446666789999999999999999999999999888754 45678999999999999999987765443 34555555
Q ss_pred HHHHHHHHh
Q 008466 314 DLESFREFF 322 (564)
Q Consensus 314 ~~~t~~~~~ 322 (564)
..+.++.+.
T Consensus 175 ~~~~~~~~~ 183 (327)
T d1tv8a_ 175 IIPMLEYFK 183 (327)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 555555554
|
| >d1p0ha_ d.108.1.1 (A:) Mycothiol synthase MshD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Mycothiol synthase MshD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.27 E-value=4.5e-07 Score=88.69 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=55.1
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcE------
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRK------ 534 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~------ 534 (564)
++.++||+.+....+.... .|-..+.|+.. |||+|||+.||..+.+++++. |+..
T Consensus 212 ~g~vvG~~~~~~~~~~~~~--------------~~i~~~~V~p~----~RGrGlG~~Ll~~~~~~~~~~-g~~~~~~~~~ 272 (308)
T d1p0ha_ 212 PGRLLGFHWTKVHPDHPGL--------------GEVYVLGVDPA----AQRRGLGQMLTSIGIVSLARR-LGGRKTLDPA 272 (308)
T ss_dssp -CCEEEEEEEECCTTSTTE--------------EEEEEEEECGG----GCSSSHHHHHHHHHHHHHHHH-C---------
T ss_pred CCeEEEEEEEEEcCCCCcE--------------EEEeccEECHH----HcCCCHHHHHHHHHHHHHHHh-CCcceeeecC
Confidence 4889999998865421111 12223457777 999999999999999999984 5543
Q ss_pred ----EE--Ee-cCCCcHHHHhhCCCeeeCc
Q 008466 535 ----MA--VI-SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 535 ----i~--~~-s~~~a~~fY~klGy~~~g~ 557 (564)
+. +. +|..|++||+++||+..+.
T Consensus 273 g~~~i~L~V~~~N~~A~~lY~~~GF~~~~~ 302 (308)
T d1p0ha_ 273 VEPAVLLYVESDNVAAVRTYQSLGFTTYSV 302 (308)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred CccEEEEeccCCCHHHHHHHHHCCCEEece
Confidence 32 22 3567899999999999986
|
| >d1s7ka1 d.108.1.1 (A:3-176) L7/L12-Ribosomal-protein-serine acetyltransferase RimL {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: L7/L12-Ribosomal-protein-serine acetyltransferase RimL species: Salmonella typhimurium [TaxId: 90371]
Probab=98.17 E-value=3.5e-06 Score=75.96 Aligned_cols=86 Identities=13% Similarity=0.168 Sum_probs=63.0
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+.+ +.+||++.+..-..... .-|+-.+ |+++ |||+|||+..+..+.++|.+.
T Consensus 65 ~~~~~i~~~---~~~iG~~~~~~~~~~~~----------~~eig~~-----i~~~----~~gkG~~~ea~~~l~~~~f~~ 122 (174)
T d1s7ka1 65 AKMYLIFCQ---NEMAGVLSFNAIEPINK----------AAYIGYW-----LDES----FQGQGIMSQSLQALMTHYARR 122 (174)
T ss_dssp CEEEEEEET---TEEEEEEEEEEEETTTT----------EEEEEEE-----ECGG----GCSSSHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEc---CCceEEEeeccccCCCC----------eEEEEEE-----Eeeh----hccchhHHHHHHHHHhhhhhh
Confidence 345666655 78999999864321111 1233222 5655 999999999999999999776
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.|+++|... .|..++++|+|+||+.+|.
T Consensus 123 ~~~~~l~a~~~~~N~~S~~~~~k~Gf~~eG~ 153 (174)
T d1s7ka1 123 GDIRRFVIKCRVDNQASNAVARRNHFTLEGC 153 (174)
T ss_dssp CSCCEEEEEEETTCHHHHHHHHHTTCEEEEE
T ss_pred cCcccceeecccCcHHHHHHHHHCCCEEEEE
Confidence 799998543 5778899999999999984
|
| >d2hv2a2 d.108.1.10 (A:2-286) Hypothetical protein EF1021 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: EF1021-like domain: Hypothetical protein EF1021 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.16 E-value=4.4e-06 Score=81.62 Aligned_cols=89 Identities=12% Similarity=0.007 Sum_probs=62.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+++ +.|||++.+-... -.+ ++..+.- .+-..|.|+++ |||+|+|++||+++.+.+++
T Consensus 43 ~~~~~~~~~---~~lvg~~~~~~~~-----~~~--~g~~~~~--~~i~~v~v~p~----~rg~G~~~~l~~~~~~~~~~- 105 (285)
T d2hv2a2 43 TQSYGFLID---EQLTSQVMATPFQ-----VNF--HGVRYPM--AGIGYVASYPE----YRGEGGISAIMKEMLADLAK- 105 (285)
T ss_dssp SEEEEEEET---TEEEEEEEEEEEE-----EEE--TTEEEEE--EEEEEEEECTT----CCSSCHHHHHHHHHHHHHHH-
T ss_pred CcEEEEEEC---CEEEEEEEEEEeE-----EEE--CCeeeeE--EEEEEEEECHH----HcCCChHHHHHHHHHHHHHH-
Confidence 355777776 8999999764211 011 1111111 12224557776 99999999999999999999
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.|+..+.+.. .+.+||+|+||+..+.
T Consensus 106 ~g~~~~~l~~--~~~~~Y~~~Gf~~~~~ 131 (285)
T d2hv2a2 106 QKVALSYLAP--FSYPFYRQYGYEQTFE 131 (285)
T ss_dssp TTCCEEEECC--SCHHHHHTTTCEECCE
T ss_pred hCCceeeeec--cchhhHhcCCcEEeee
Confidence 4988877754 3579999999998875
|
| >d1nsla_ d.108.1.1 (A:) Probable acetyltransferase YdaF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable acetyltransferase YdaF species: Bacillus subtilis [TaxId: 1423]
Probab=98.13 E-value=3.2e-06 Score=76.51 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=56.9
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe---
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI--- 538 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~--- 538 (564)
+.+||++.+.-..... +. -|+.. .|+++ |||+|||+.+|..+.++|.+++|+++|.+.
T Consensus 77 ~~~iG~~~~~~~~~~~-------~~---~eig~-----~i~~~----~~g~G~~~e~~~~~~~~af~~~~~~~i~~~v~~ 137 (180)
T d1nsla_ 77 GSLCGMISLHNLDQVN-------RK---AEIGY-----WIAKE----FEGKGIITAACRKLITYAFEELELNRVAICAAV 137 (180)
T ss_dssp TEEEEEEEEEEEETTT-------TE---EEEEE-----EECGG----GTTSSHHHHHHHHHHHHHHHTSCCSEEEEEEET
T ss_pred CcEEEEEEeeecccCC-------Ce---EEEEE-----eeccc----ccccccchhhhhhhhhccccccCcceeeccccc
Confidence 7899999887322110 01 12222 25655 999999999999999999665799998543
Q ss_pred cCCCcHHHHhhCCCeeeCc
Q 008466 539 SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 s~~~a~~fY~klGy~~~g~ 557 (564)
.|..++++|+|+||+.+|.
T Consensus 138 ~N~~s~~~~~k~GF~~eg~ 156 (180)
T d1nsla_ 138 GNEKSRAVPERIGFLEEGK 156 (180)
T ss_dssp TCHHHHHHHHHHTCEEEEE
T ss_pred ccHHHHHHHHHCCCEEEEE
Confidence 4667899999999999884
|
| >d2fcka1 d.108.1.1 (A:1-178) Putative ribosomal-protein-serine acetyltransferase VC1889 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Putative ribosomal-protein-serine acetyltransferase VC1889 species: Vibrio cholerae [TaxId: 666]
Probab=98.11 E-value=3.5e-06 Score=76.33 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=58.6
Q ss_pred cCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe
Q 008466 459 TRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI 538 (564)
Q Consensus 459 ~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~ 538 (564)
.+++.+||++.+......... -|+- ..|++. |||+|+|+.++..+.++|.+..++++|...
T Consensus 75 ~~~~~~iG~~~l~~~~~~~~~----------~eig-----~~i~~~----~~g~G~~~e~l~~l~~~af~~~~~~~i~~~ 135 (178)
T d2fcka1 75 RQTQTLVGMVAINEFYHTFNM----------ASLG-----YWIGDR----YQRQGYGKEALTALILFCFERLELTRLEIV 135 (178)
T ss_dssp TTTCCEEEEEEEEEEEGGGTE----------EEEE-----EEECHH----HHTTTHHHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ccCCceEEEEeecccccCCCe----------EEEE-----Eeeecc----cccchhhhhhhheeeeeeccccCcceeeEe
Confidence 356789999998632211111 1221 125554 999999999999999999776799998543
Q ss_pred ---cCCCcHHHHhhCCCeeeCc
Q 008466 539 ---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 ---s~~~a~~fY~klGy~~~g~ 557 (564)
.|..+.++|+|+||+.+|.
T Consensus 136 ~~~~N~~s~~l~ek~GF~~eg~ 157 (178)
T d2fcka1 136 CDPENVPSQALALRCGANREQL 157 (178)
T ss_dssp ECTTCHHHHHHHHHTTCEEEEE
T ss_pred cCCCcHHHHHHHHHCCCEEEEE
Confidence 4778899999999999983
|
| >d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein SA2309 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.07 E-value=3e-06 Score=70.69 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=54.2
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+...+ +.+||++.+...+ ...+.--|++ |.++ +||||+|++||+.+.++|+++
T Consensus 11 ~~f~v~~~~---g~~vg~~~~~~~~-----------~~~~~i~~~~-----V~p~----~RG~Gig~~Lv~~~l~~Ar~~ 67 (102)
T d1r57a_ 11 NKFYIGDDE---NNALAEITYRFVD-----------NNEINIDHTG-----VSDE----LGGQGVGKKLLKAVVEHAREN 67 (102)
T ss_dssp TEEEEESSS---TTEEEEEEEEESS-----------SSEEEEEEEE-----ECCS----SSTTCTHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeC---CceEEEEEEEEcC-----------CCEEEEEEEE-----EChH----HCCccHHHHHHHHHHHHHHHC
Confidence 456766665 8889999998553 1122223565 7777 999999999999999999996
Q ss_pred CCCcEEEEecCCCcHHHHhh
Q 008466 530 HRSRKMAVISGVGTRHYYRK 549 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~k 549 (564)
|++-+.+++ -|..|++|
T Consensus 68 -g~kvvp~c~--y~~~~~~k 84 (102)
T d1r57a_ 68 -NLKIIASCS--FAKHMLEK 84 (102)
T ss_dssp -TCEEEESSH--HHHHHHHH
T ss_pred -CCEEEEecH--hHHHHHHh
Confidence 887554443 56777776
|
| >d2i00a2 d.108.1.10 (A:10-300) Putative acetyltransferase EF2353 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: EF1021-like domain: Putative acetyltransferase EF2353 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.06 E-value=5.6e-06 Score=80.95 Aligned_cols=88 Identities=15% Similarity=0.207 Sum_probs=61.1
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+.+++ |.|||++.+-.-. -.+. +..++- .+...|.|+++ |||+|+|++||+++.+.++++
T Consensus 52 ~~~~~~~~---~~lvg~~~~~~~~-----~~~~--g~~~~~--~~i~~v~v~p~----~r~~G~~~~L~~~~~~~~~~~- 114 (291)
T d2i00a2 52 KVFGWFHE---NQLISQIAIYPCE-----VNIH--GALYKM--GGVTGVGTYPE----YANHGLMKDLIQTALEEMRQD- 114 (291)
T ss_dssp EEEEEEET---TEEEEEEEEEEEE-----EEET--TEEEEE--EEEEEEEECGG----GTTSCHHHHHHHHHHHHHHHT-
T ss_pred cEEEEEEC---CEEEEEEEEEEeE-----EEEC--CeeeeE--EEEEEEEEchh----hcCCChHHHHHHHHHHHHHhc-
Confidence 45677776 8999999874210 0111 111111 22223456766 999999999999999999995
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
|+....+.+ .+..||+|+||+..+.
T Consensus 115 ~~~~~~l~~--~~~~~Y~~~Gf~~~~~ 139 (291)
T d2i00a2 115 KQWISYLFP--YNIPYYRRKGWEIMSD 139 (291)
T ss_dssp TCCEEEECC--SCHHHHHHTTCEEEEE
T ss_pred CCcEEEeec--cchhhHhcCCCEEecc
Confidence 888766654 3589999999998774
|
| >d1yk3a1 d.108.1.1 (A:10-207) Hypothetical protein Rv1347c/MT1389 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein Rv1347c/MT1389 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.98 E-value=9.4e-06 Score=74.85 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=63.4
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH-h
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL-G 528 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~-~ 528 (564)
...++...+ +..+|++.+........-.... ...-...+|.| .+.. ++||+|||+.+|..+.+++. +
T Consensus 82 ~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~----~~~GkG~gt~~l~~li~~~f~~ 149 (198)
T d1yk3a1 82 SLPLIGSWH---GTDGGYLELYWAAKDLISHYYD-ADPYDLGLHAA----IADL----SKVNRGFGPLLLPRIVASVFAN 149 (198)
T ss_dssp EEEEEEEET---TEEEEEEEEEEGGGBGGGGSSC-CCTTCEEEEEE----ESCH----HHHTTTHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEC---CEEEEEEEEEeccccccccccc-cCCCceEEEEE----EECh----hhcCCcHHHHHHHHHHHHHHhh
Confidence 444555555 7889999886543111100011 11112345544 1233 39999999999999999874 3
Q ss_pred cCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
..|+.+|.+. .|..+.++|+|+||+.+|.
T Consensus 150 ~~~~~ri~~~v~~~N~~s~rl~erlGF~~~ge 181 (198)
T d1yk3a1 150 EPRCRRIMFDPDHRNTATRRLCEWAGCKFLGE 181 (198)
T ss_dssp CTTCCEEEECCBTTCHHHHHHHHHHTCEEEEE
T ss_pred cCCccEEEEEeCCCCHHHHHHHHHcCCEEEeE
Confidence 3589998654 5778999999999999985
|
| >d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: EF1021-like domain: Putative acetyltransferase Ava4977 species: Anabaena variabilis [TaxId: 1172]
Probab=97.97 E-value=1.5e-05 Score=77.62 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=59.3
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+++.+++ |.+||.+.+-.-. -.+ ++..+.-- +...|.|+++ |||+|+|++||+++.+.++++ |
T Consensus 42 ~~v~~~~---~~ivg~~~~~~~~-----~~~--~g~~~~~~--~i~~v~v~p~----~rg~G~~~~L~~~~~~~~~~~-g 104 (283)
T d2ozga2 42 FRVIYRE---QKVAGGLAILPMG-----QWW--GGQRVPMA--GIAAVGIAPE----YRGDGAAIALIQHTLQEISEQ-D 104 (283)
T ss_dssp EEEEEET---TEEEEEEEEEEEE-----EEE--TTEEEEEE--EEEEEEECGG----GTTSSHHHHHHHHHHHHHHHT-T
T ss_pred EEEEEEC---CEEEEEEEEEEee-----eeE--CCeeeeEe--eEEEEEECcc----cccCChHHHHHHHHHHHHHhc-C
Confidence 3566665 8999999876321 001 01111111 2234556776 999999999999999999984 8
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+.-..+.+ .+..||+|+||+..+.
T Consensus 105 ~~~~~l~~--~~~~~Y~~~Gf~~~~~ 128 (283)
T d2ozga2 105 IPISVLYP--ATQRLYRKAGYEQAGS 128 (283)
T ss_dssp CCEEEECC--SCHHHHHHTTCEEEEE
T ss_pred ceEEEccC--CccchHHcCCCeEece
Confidence 87655533 4678999999998774
|
| >d1sqha_ d.108.1.5 (A:) Hypothetical protein cg14615-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: Hypothetical protein cg14615-pa domain: Hypothetical protein cg14615-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.78 E-value=1.7e-05 Score=78.38 Aligned_cols=52 Identities=15% Similarity=0.311 Sum_probs=44.2
Q ss_pred ccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEE--Ee-cCCCcHHHHhhCCCeeeCc
Q 008466 501 VHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMA--VI-SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 501 v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~--~~-s~~~a~~fY~klGy~~~g~ 557 (564)
|.++ |||+|+|++||.++++++++. |+..+. +. .|..+++||+|+||+..+.
T Consensus 233 V~p~----~r~~G~g~~l~~~~~~~~~~~-g~~~v~~~v~~~N~~s~~ly~klGF~~~~~ 287 (297)
T d1sqha_ 233 VLPK----AERRGLGGLLAAAMSREIARG-EEITLTAWIVATNWRSEALLKRIGYQKDLV 287 (297)
T ss_dssp ECGG----GCSSSHHHHHHHHHHHHHHHH-SCSCEEEEEETTCHHHHHHHHHHTCEEEEE
T ss_pred EChH----hcCCCHHHHHHHHHHHHHHHC-CCCEEEEEEcCCcHHHHHHHHHCCCEEeeE
Confidence 6766 999999999999999999995 988764 33 4667899999999999874
|
| >d1yrea1 d.108.1.1 (A:11-193) Hypothetical protein PA3270 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein PA3270 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.76 E-value=2.6e-05 Score=70.79 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||++.+.-..+.. +..++ |- +-|+++ |||+|+|+..+..+.++|.+..|+++|.+.
T Consensus 66 ~g~~iG~i~l~~~~~~~------------~~~ei-G~-~~l~~~----~~g~G~~~ea~~~l~~~af~~lg~~~i~~~v~ 127 (183)
T d1yrea1 66 GVQLVGTTRFAEFLPAL------------PACEI-GW-TWLDQA----QHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTA 127 (183)
T ss_dssp TTEEEEEEEEEEEETTT------------TEEEE-EE-EEECGG----GTTTTHHHHHHHHHHHHHHHTSCCSEEEEEEE
T ss_pred CCEEEEEEEeeeccccC------------CeEEE-EE-EEecHH----HcCCccchhHHHHHhhhhhhccCcceEEeecc
Confidence 48999999985221111 12222 10 114555 999999999999999999765799999543
Q ss_pred -cCCCcHHHHhhCCCeeeCc
Q 008466 539 -SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g~ 557 (564)
.|..++.+|+|+||+.+|.
T Consensus 128 ~~N~aS~~~~~k~Gf~~eg~ 147 (183)
T d1yrea1 128 ASNLRAQGAIDKLGAQREGV 147 (183)
T ss_dssp TTCHHHHHHHHHHTCEEEEE
T ss_pred cCCHHHHhhHhccCeEEEEE
Confidence 4667899999999999884
|
| >d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Probable acetyltranferase Atu2435 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.39 E-value=0.00025 Score=61.75 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=58.6
Q ss_pred ecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEE
Q 008466 458 DTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAV 537 (564)
Q Consensus 458 d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~ 537 (564)
+.+++.++|.+.+.... .. +.. ..|. .+... ++++|+|+..+..+..++.+..|+++|.+
T Consensus 67 ~~~~~~~ig~~~~~~~~-~~------------~~~-~~g~--~~~~~----~~~~g~~~~~~~~~~~~~~~~l~~~~v~~ 126 (164)
T d2fsra1 67 LGETGECIGQIGINHGP-LF------------PEK-ELGW--LLYEG----HEGRGYAAEAAVALRDWAFETLNLPTLVS 126 (164)
T ss_dssp ETTTTEEEEEEEEECST-TC------------SSC-EEEE--EECTT----CTTSSHHHHHHHHHHHHHHHHSCCSCEEE
T ss_pred EcCCCeEEEEEEeeccC-cc------------ccc-eEee--Eeeee----eccccccccceeEEEeeccccccceeEEE
Confidence 34567889999987442 10 111 1121 24554 89999999999999999987789999854
Q ss_pred e---cCCCcHHHHhhCCCeeeCc
Q 008466 538 I---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 538 ~---s~~~a~~fY~klGy~~~g~ 557 (564)
. .|..+..+|+|+||+.+|.
T Consensus 127 ~v~~~N~~S~rl~ek~GF~~eg~ 149 (164)
T d2fsra1 127 YVSPQNRKSAAVAERIGGTLDPL 149 (164)
T ss_dssp EECTTCHHHHHHHHHTTCEECTT
T ss_pred EECcCCHHHHHHHHHCCCEEeee
Confidence 3 4667899999999999885
|
| >d1ro5a_ d.108.1.3 (A:) Autoinducer synthesis protein LasI {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: Autoinducer synthetase domain: Autoinducer synthesis protein LasI species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.40 E-value=0.0063 Score=55.51 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=62.5
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCC----CccccCCccceeeeee-eecccccccCCCchhh----hhcCHHHHHHH
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNV----TCPELMGKCSIVRELH-VYGTAVPVHGREADKL----QHQGYGTLLME 520 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~----~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~----q~~GiG~~Lm~ 520 (564)
+-+++... ++.+||.+||....... ..+++..+....+.-+ +-.+=+.|+++ + ++.+++..||.
T Consensus 54 ~~~lv~~~---~g~~vG~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~sR~aV~~~----~r~~~r~~~~~~~L~~ 126 (197)
T d1ro5a_ 54 PYYMLIQE---DGQVFGCWRILDTTGPYMLKNTFPELLHGKEAPCSPHIWELSRFAINSG----QKGSLGFSDCTLEAMR 126 (197)
T ss_dssp CEEEEEEE---TTEEEEEEEEEETTSCCHHHHTCGGGGTTCCCCCCTTEEEEEEEEECCS----TTCCSCSHHHHHHHHH
T ss_pred cEEEEecc---ccceEEEEEeecCCCCCcccccchhhhcCccccCCCceEEEEEEEEccc----cccccchhHHHHHHHH
Confidence 33444433 37789999998654211 1122211111111111 23344457765 6 44458899999
Q ss_pred HHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCee
Q 008466 521 EAERIALGEHRSRKMAVISGVGTRHYYRKLGYEL 554 (564)
Q Consensus 521 ~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~ 554 (564)
.+.++|.+ +|++.+...+.....+||+++||..
T Consensus 127 ~~~~~a~~-~G~~~~~~~~~~~~~r~~~r~G~~~ 159 (197)
T d1ro5a_ 127 ALARYSLQ-NDIQTLVTVTTVGVEKMMIRAGLDV 159 (197)
T ss_dssp HHHHHHHT-TTCCEEEEEEEHHHHHHHHHTTCEE
T ss_pred HHHHHHHH-CCCCEEEEEecHHHHHHHHHCCCcE
Confidence 99999999 5999998888889999999999954
|
| >d1p0ha_ d.108.1.1 (A:) Mycothiol synthase MshD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Mycothiol synthase MshD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.20 E-value=0.0051 Score=58.77 Aligned_cols=76 Identities=18% Similarity=0.103 Sum_probs=51.6
Q ss_pred CCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEec
Q 008466 460 RQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS 539 (564)
Q Consensus 460 ~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s 539 (564)
+++.+|||+.+.... .... -+.. +.|+.. |||+|||+.|+++++..+++. +...+ ...
T Consensus 55 ~~g~~vG~~~~~~~~---------~~~~--~~~~-----~~V~P~----~R~~GiG~~Ll~~~~~~~~~~-~~~~v-~~~ 112 (308)
T d1p0ha_ 55 PGGPIIGYLNLSPPR---------GAGG--AMAE-----LVVHPQ----SRRRGIGTAMARAALAKTAGR-NQFWA-HGT 112 (308)
T ss_dssp TTCCEEEEEEEECC------------CC--CEEE-----EEECGG----GCSSSHHHHHHHHHHHHTTTC-CEEEE-GGG
T ss_pred cCCEEEEEEEEEecC---------CCce--eEEE-----EEECHH----HhcCCHHHHHHHHHHHHHhhh-cccee-ccc
Confidence 448899999886432 0011 1111 236766 999999999999999998873 44332 234
Q ss_pred CCCcHHHHhhCCCeeeCc
Q 008466 540 GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 540 ~~~a~~fY~klGy~~~g~ 557 (564)
+..+..+|.++||.....
T Consensus 113 ~~~~~~~~~~~~~~~~~~ 130 (308)
T d1p0ha_ 113 LDPARATASALGLVGVRE 130 (308)
T ss_dssp CHHHHHHHHHTTCEEEEE
T ss_pred chhhHHHHHhcccccccc
Confidence 556789999999987654
|
| >d1xmta_ d.108.1.1 (A:) Hypothetical protein AT1g77540 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Hypothetical protein AT1g77540 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.74 E-value=0.022 Score=45.87 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=28.7
Q ss_pred eeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcE
Q 008466 489 VRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRK 534 (564)
Q Consensus 489 ~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~ 534 (564)
+--.|.+ |... +||||+|++|++++-++|+++ |.+-
T Consensus 33 i~i~HT~-----V~~~----~rGqGia~~Lv~~al~~ar~~-g~kV 68 (95)
T d1xmta_ 33 MDLVHTY-----VPSF----KRGLGLASHLCVAAFEHASSH-SISI 68 (95)
T ss_dssp EEEEEEE-----CCGG----GTTSCHHHHHHHHHHHHHHHT-TCEE
T ss_pred EEEEEEE-----eCcc----cCCChHHHHHHHHHHHHHHHC-CCEE
Confidence 3345665 5655 999999999999999999996 7643
|
| >d1kzfa_ d.108.1.3 (A:) Acyl-homoserinelactone synthase EsaI {Pantoea stewartii subsp. stewartii [TaxId: 66271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: Autoinducer synthetase domain: Acyl-homoserinelactone synthase EsaI species: Pantoea stewartii subsp. stewartii [TaxId: 66271]
Probab=88.53 E-value=0.41 Score=43.36 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCee
Q 008466 513 GYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYEL 554 (564)
Q Consensus 513 GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~ 554 (564)
.+...|+..+-++|.+ +|+..+.........++|+++||..
T Consensus 117 ~v~~~L~~~~~~~a~~-~Gi~~~~~v~~~~~~r~~~r~G~~~ 157 (210)
T d1kzfa_ 117 PISQVLFLAMVNWAQN-NAYGNIYTIVSRAMLKILTRSGWQI 157 (210)
T ss_dssp CHHHHHHHHHHHHHHH-TTCSEEEEEEEHHHHHHHHHHCCCC
T ss_pred hHHHHHHHHHHHHHHH-CCCCEEEEEeCHHHHHHHHHCCCCe
Confidence 4788999999999999 6999998777778899999999843
|
| >d1boba_ d.108.1.1 (A:) Histone acetyltransferase HAT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Acyl-CoA N-acyltransferases (Nat) superfamily: Acyl-CoA N-acyltransferases (Nat) family: N-acetyl transferase, NAT domain: Histone acetyltransferase HAT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.63 E-value=0.53 Score=45.44 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=45.0
Q ss_pred CCeEEEEEEeecCCCeEEEEEEE-EecC---CCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRL-RKCG---RNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAE 523 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrl-r~~~---~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE 523 (564)
+.|++|+-|+.. ...++||..+ ++-. ...+.++... -.|-. - +-+.|... |||+|+|++|++.+=
T Consensus 167 ~~W~~~~~~ek~-~~~~~Gy~T~Y~~~~Y~~~~~f~~~~~~---~~R~R--I-SQ~LILPP----yQ~kG~G~~L~~~iy 235 (315)
T d1boba_ 167 PSWQIYWLLNKK-TKELIGFVTTYKYWHYLGAKSFDEDIDK---KFRAK--I-SQFLIFPP----YQNKGHGSCLYEAII 235 (315)
T ss_dssp TTEEEEEEEETT-TCCEEEEEEEEEECCC---------CCC---CEEEE--E-EEEEECGG----GCSSSHHHHHHHHHH
T ss_pred CCEEEEEEEecC-CCcccceeeeeeeeeccccccccccccc---cccce--e-EEEEEeCc----cccCCchHHHHHHHH
Confidence 459999999874 4557999865 3221 0111111111 11211 0 11336665 999999999999987
Q ss_pred HHHHhcCCCcEEEEe
Q 008466 524 RIALGEHRSRKMAVI 538 (564)
Q Consensus 524 ~~A~~~~g~~~i~~~ 538 (564)
+.+.+.-++.-|+|-
T Consensus 236 ~~~~~d~~v~eiTVE 250 (315)
T d1boba_ 236 QSWLEDKSITEITVE 250 (315)
T ss_dssp HHHHHCTTEEEEEES
T ss_pred HHHhcCCCeeecccc
Confidence 666653255555553
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=82.74 E-value=2.4 Score=38.28 Aligned_cols=149 Identities=20% Similarity=0.240 Sum_probs=86.7
Q ss_pred EEcCCC---CCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcCCCeEE
Q 008466 186 LMGGTF---MSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYGCTRLE 261 (564)
Q Consensus 186 ~~GGTp---t~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G~~rvs 261 (564)
+|.|+| .+++++. ++.+.+... -...+-+.+ +|+ ..++.+.++|++.|.
T Consensus 35 imDg~Fvpn~s~g~~~----i~~i~~~t~-------------------~~~dvHLMv~~P~----~~i~~~~~~ga~~i~ 87 (217)
T d2flia1 35 IMDGQFVPNISFGADV----VASMRKHSK-------------------LVFDCHLMVVDPE----RYVEAFAQAGADIMT 87 (217)
T ss_dssp EEBSSSSSCBCBCHHH----HHHHHTTCC-------------------SEEEEEEESSSGG----GGHHHHHHHTCSEEE
T ss_pred cccCcCCCccccCHHH----HHHHHhcCC-------------------CceEeEEEecCHH----HHHHHHHHcCCcEEE
Confidence 799988 4667654 444443221 123555554 665 589999999999999
Q ss_pred EccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC
Q 008466 262 IGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIR 341 (564)
Q Consensus 262 iGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~ 341 (564)
+=+++.++ ..+.++.+++.|+++..-+-++-| .+. +...++ ..|.|.+. .+.|
T Consensus 88 ~H~E~~~~--------------~~~~i~~i~~~g~~~Gial~p~T~---~~~----~~~~l~----~id~vliM--~V~p 140 (217)
T d2flia1 88 IHTESTRH--------------IHGALQKIKAAGMKAGVVINPGTP---ATA----LEPLLD----LVDQVLIM--TVNP 140 (217)
T ss_dssp EEGGGCSC--------------HHHHHHHHHHTTSEEEEEECTTSC---GGG----GGGGTT----TCSEEEEE--SSCT
T ss_pred eccccccC--------------HHHHHHHHHhcCCeEEEEecCCcc---hhH----HHhHHh----hcCEEEEE--EEcC
Confidence 99988743 445678899999998876655444 332 223321 35776654 5678
Q ss_pred CChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHH
Q 008466 342 GTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELAL 405 (564)
Q Consensus 342 GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~ 405 (564)
|.. |.--....-+.+..+...+..-.+.+.++ +..|+...++..+..
T Consensus 141 G~~-------Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~----------vDGGIn~~~i~~l~~ 187 (217)
T d2flia1 141 GFG-------GQAFIPECLEKVATVAKWRDEKGLSFDIE----------VDGGVDNKTIRACYE 187 (217)
T ss_dssp TCS-------SCCCCGGGHHHHHHHHHHHHHTTCCCEEE----------EESSCCTTTHHHHHH
T ss_pred ccc-------ccccchhhHHHHHHHHHHHHhcCCCeEEE----------EeCCCCHHHHHHHHH
Confidence 852 22212223333344443333222223332 456777777776654
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=81.25 E-value=5.9 Score=36.52 Aligned_cols=123 Identities=18% Similarity=0.176 Sum_probs=83.6
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcC-CCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCe
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSG-HTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTR 259 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~-~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~r 259 (564)
|..+ |++||....|.+.+++.++..+++--. +....+-|+.. ..+ .-++.++..+++|++.
T Consensus 39 ID~~K~g~Gt~~l~p~~~l~eKI~l~~~~~V~v~~GGtlfE~a~----------------~qg-~~~~y~~~~~~lGf~~ 101 (251)
T d1qwga_ 39 IDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAY----------------SKG-KFDEFLNECEKLGFEA 101 (251)
T ss_dssp CSEEEECTTGGGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHH----------------HTT-CHHHHHHHHHHHTCCE
T ss_pred eeEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHH----------------HcC-CHHHHHHHHHHcCCCE
Confidence 7778 899999999999999888877653211 11111211110 112 3578999999999999
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC----CCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN----VGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPg----et~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
|+|.==|.+ .+.++-.+.++.+++.||+|..-+=.-.|. -+.+++.+.++..++ .+.+.|-+
T Consensus 102 iEiSdg~~~----------i~~~~~~~~I~~~~~~G~~V~~EvG~K~~~~~~~~~~~~~i~~~~~~Le---aGA~~Vii 167 (251)
T d1qwga_ 102 VEISDGSSD----------ISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLD---AGADYVII 167 (251)
T ss_dssp EEECCSSSC----------CCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHH---HTCSEEEE
T ss_pred EEEcCCccC----------CCHHHHHHHHHHHHhCCCEEeecccCCCCCCccccCHHHHHHHHHHHHH---CCCceeEe
Confidence 999755442 466788899999999999987654222111 357778888888875 45666544
|